Query 002299
Match_columns 940
No_of_seqs 839 out of 5352
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 20:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-121 4E-126 1139.3 79.8 863 18-910 9-904 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 7.9E-59 1.7E-63 545.4 31.8 452 195-678 161-651 (889)
3 PLN03194 putative disease resi 100.0 1.2E-40 2.5E-45 306.8 15.6 154 18-185 23-179 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-37 2.8E-42 333.5 16.3 268 197-468 1-284 (287)
5 PLN00113 leucine-rich repeat r 100.0 1.5E-30 3.2E-35 326.4 19.8 364 537-911 72-464 (968)
6 PLN00113 leucine-rich repeat r 100.0 4.6E-29 9.9E-34 313.0 20.2 353 549-912 108-488 (968)
7 KOG4194 Membrane glycoprotein 99.9 3.5E-28 7.6E-33 255.5 7.8 350 536-908 80-448 (873)
8 KOG0444 Cytoskeletal regulator 99.9 6E-29 1.3E-33 262.5 -5.0 322 559-911 7-374 (1255)
9 KOG4194 Membrane glycoprotein 99.9 9.1E-27 2E-31 244.9 1.3 362 560-937 79-470 (873)
10 KOG0444 Cytoskeletal regulator 99.9 1.6E-26 3.4E-31 244.3 -3.0 324 552-893 25-380 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 1.1E-26 2.4E-31 234.0 -5.4 352 552-913 84-542 (565)
12 PLN03210 Resistant to P. syrin 99.9 1.7E-20 3.6E-25 235.2 23.9 307 553-891 582-909 (1153)
13 KOG0618 Serine/threonine phosp 99.9 3.9E-23 8.5E-28 229.8 0.1 351 552-911 38-488 (1081)
14 KOG0472 Leucine-rich repeat pr 99.8 2.8E-23 6.1E-28 209.6 -11.2 326 553-913 39-472 (565)
15 PRK15387 E3 ubiquitin-protein 99.8 4.2E-18 9.1E-23 197.2 17.4 263 561-895 203-465 (788)
16 PF01582 TIR: TIR domain; Int 99.8 1.9E-19 4.2E-24 168.7 5.1 129 24-152 1-140 (141)
17 PRK15387 E3 ubiquitin-protein 99.7 1.4E-17 3.1E-22 192.8 17.1 258 585-914 203-460 (788)
18 smart00255 TIR Toll - interleu 99.7 6.3E-18 1.4E-22 159.4 11.1 134 21-155 1-138 (140)
19 KOG0618 Serine/threonine phosp 99.7 6.7E-19 1.5E-23 196.4 -1.6 312 561-911 23-419 (1081)
20 PRK15370 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 186.7 12.0 251 583-888 178-428 (754)
21 PRK15370 E3 ubiquitin-protein 99.7 3.2E-16 6.8E-21 183.2 13.3 245 560-854 179-428 (754)
22 KOG4237 Extracellular matrix p 99.6 8.2E-18 1.8E-22 170.4 -5.0 303 571-934 55-374 (498)
23 KOG4237 Extracellular matrix p 99.5 5.5E-16 1.2E-20 157.3 -3.7 351 539-909 72-498 (498)
24 KOG0617 Ras suppressor protein 99.5 9.4E-16 2E-20 137.5 -2.5 174 715-911 34-211 (264)
25 cd00116 LRR_RI Leucine-rich re 99.5 1.2E-15 2.6E-20 166.6 -2.7 262 616-910 17-318 (319)
26 KOG0617 Ras suppressor protein 99.5 1.1E-15 2.3E-20 137.1 -3.7 188 686-891 27-215 (264)
27 PRK04841 transcriptional regul 99.5 4.2E-12 9.1E-17 159.1 26.0 297 187-504 9-335 (903)
28 PF13676 TIR_2: TIR domain; PD 99.5 2.4E-14 5.3E-19 126.2 3.8 87 24-116 1-87 (102)
29 cd00116 LRR_RI Leucine-rich re 99.4 1.8E-14 4E-19 157.2 -1.6 261 583-887 23-319 (319)
30 PRK00411 cdc6 cell division co 99.2 2.4E-09 5.1E-14 120.2 24.4 247 189-447 27-308 (394)
31 PF01637 Arch_ATPase: Archaeal 99.2 8.1E-11 1.8E-15 122.1 10.7 196 194-394 1-233 (234)
32 TIGR00635 ruvB Holliday juncti 99.1 1.9E-09 4E-14 116.3 18.8 269 192-483 4-289 (305)
33 PRK00080 ruvB Holliday junctio 99.1 1.4E-09 3E-14 117.9 16.2 258 188-483 21-310 (328)
34 COG2909 MalT ATP-dependent tra 99.1 7.7E-09 1.7E-13 117.0 21.2 294 187-504 14-341 (894)
35 TIGR02928 orc1/cdc6 family rep 99.1 2.6E-08 5.6E-13 110.6 25.6 246 189-445 12-298 (365)
36 PF05729 NACHT: NACHT domain 99.1 1.5E-09 3.3E-14 105.7 12.6 142 216-364 1-163 (166)
37 TIGR03015 pepcterm_ATPase puta 99.0 1.9E-08 4.1E-13 106.6 21.3 178 215-399 43-242 (269)
38 COG3899 Predicted ATPase [Gene 99.0 9.5E-09 2.1E-13 123.5 20.8 306 193-501 1-386 (849)
39 KOG4658 Apoptotic ATPase [Sign 99.0 1.8E-09 3.8E-14 129.1 14.2 275 559-856 523-809 (889)
40 PRK06893 DNA replication initi 98.9 3.6E-08 7.8E-13 100.6 16.5 152 215-397 39-205 (229)
41 KOG3207 Beta-tubulin folding c 98.9 6.9E-10 1.5E-14 115.3 1.9 210 642-889 118-340 (505)
42 KOG1259 Nischarin, modulator o 98.9 5.9E-10 1.3E-14 109.6 1.3 130 716-858 286-416 (490)
43 COG3903 Predicted ATPase [Gene 98.8 3.5E-09 7.5E-14 110.8 6.5 278 214-502 13-315 (414)
44 KOG3207 Beta-tubulin folding c 98.8 5.4E-10 1.2E-14 116.0 -0.2 147 619-771 118-281 (505)
45 KOG0532 Leucine-rich repeat (L 98.8 1.3E-10 2.9E-15 124.1 -5.6 190 694-910 77-271 (722)
46 KOG1259 Nischarin, modulator o 98.8 2.2E-09 4.7E-14 105.7 2.0 104 793-911 307-411 (490)
47 KOG0532 Leucine-rich repeat (L 98.7 1E-09 2.2E-14 117.5 -1.8 156 613-771 112-270 (722)
48 PTZ00112 origin recognition co 98.7 8.2E-07 1.8E-11 101.6 20.6 243 189-445 752-1030(1164)
49 COG4886 Leucine-rich repeat (L 98.7 2.2E-08 4.9E-13 112.5 8.5 151 716-890 142-292 (394)
50 KOG1909 Ran GTPase-activating 98.7 3.9E-10 8.4E-15 114.0 -5.8 237 619-887 27-310 (382)
51 COG2256 MGS1 ATPase related to 98.7 2.5E-07 5.5E-12 96.2 13.9 217 191-437 23-267 (436)
52 COG4886 Leucine-rich repeat (L 98.7 1.7E-08 3.8E-13 113.3 6.1 172 715-911 117-289 (394)
53 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.7E-13 97.3 3.4 84 813-907 60-148 (175)
54 TIGR03420 DnaA_homol_Hda DnaA 98.7 4E-07 8.8E-12 93.5 14.8 173 192-397 15-203 (226)
55 KOG1909 Ran GTPase-activating 98.7 5E-09 1.1E-13 106.2 0.4 58 716-773 187-253 (382)
56 PRK13342 recombination factor 98.7 1.9E-06 4.2E-11 96.4 21.0 177 189-396 9-197 (413)
57 PF14580 LRR_9: Leucine-rich r 98.6 1.1E-08 2.4E-13 97.7 2.4 141 723-883 6-148 (175)
58 PTZ00202 tuzin; Provisional 98.6 1.4E-05 3E-10 85.1 22.6 167 186-364 256-434 (550)
59 PLN03150 hypothetical protein; 98.6 7.9E-08 1.7E-12 113.0 6.6 62 793-854 442-503 (623)
60 KOG2120 SCF ubiquitin ligase, 98.5 9.6E-10 2.1E-14 108.3 -8.0 160 583-774 185-351 (419)
61 PRK07003 DNA polymerase III su 98.5 6E-06 1.3E-10 94.4 20.1 192 189-394 13-220 (830)
62 PF05496 RuvB_N: Holliday junc 98.5 3.1E-06 6.8E-11 82.5 15.2 180 188-399 20-225 (233)
63 PRK12402 replication factor C 98.5 2.2E-06 4.8E-11 94.1 15.9 200 189-394 12-225 (337)
64 PRK08727 hypothetical protein; 98.5 3.5E-06 7.6E-11 86.2 16.2 168 192-392 19-201 (233)
65 PRK07471 DNA polymerase III su 98.5 1.3E-05 2.9E-10 87.0 21.3 199 188-395 15-238 (365)
66 PF13401 AAA_22: AAA domain; P 98.5 8E-07 1.7E-11 82.4 10.3 113 215-333 4-125 (131)
67 PF00308 Bac_DnaA: Bacterial d 98.5 4E-06 8.7E-11 84.6 15.9 178 195-394 12-207 (219)
68 PRK14961 DNA polymerase III su 98.5 5.3E-06 1.1E-10 91.0 17.8 191 189-392 13-217 (363)
69 PF13191 AAA_16: AAA ATPase do 98.5 4E-07 8.6E-12 90.4 8.3 50 193-242 1-51 (185)
70 PF13855 LRR_8: Leucine rich r 98.5 1.2E-07 2.6E-12 74.1 3.5 40 818-857 2-41 (61)
71 PRK15386 type III secretion pr 98.5 6.2E-07 1.4E-11 96.0 9.8 135 691-852 51-188 (426)
72 PRK08903 DnaA regulatory inact 98.5 2.4E-06 5.2E-11 87.6 13.8 173 191-399 17-203 (227)
73 PF13173 AAA_14: AAA domain 98.5 1.3E-06 2.8E-11 80.3 10.6 119 216-356 3-127 (128)
74 PRK14963 DNA polymerase III su 98.4 2.2E-05 4.9E-10 88.9 22.2 193 189-392 11-214 (504)
75 PRK05642 DNA replication initi 98.4 6.9E-06 1.5E-10 84.0 16.5 150 216-396 46-209 (234)
76 PRK08084 DNA replication initi 98.4 6.3E-06 1.4E-10 84.4 16.3 163 200-395 32-209 (235)
77 PRK14960 DNA polymerase III su 98.4 5.3E-06 1.1E-10 93.9 16.0 193 189-393 12-217 (702)
78 PLN03025 replication factor C 98.4 2.2E-06 4.8E-11 92.5 12.8 183 188-391 9-196 (319)
79 PRK14949 DNA polymerase III su 98.4 4.5E-06 9.8E-11 97.4 15.8 198 189-394 13-219 (944)
80 TIGR01242 26Sp45 26S proteasom 98.4 1.9E-06 4E-11 95.0 11.6 175 190-389 120-328 (364)
81 KOG4341 F-box protein containi 98.4 7.2E-09 1.6E-13 107.3 -6.9 112 793-909 320-436 (483)
82 PRK04195 replication factor C 98.4 1.2E-05 2.6E-10 91.9 18.4 181 188-394 10-201 (482)
83 PRK00440 rfc replication facto 98.4 1.6E-05 3.4E-10 86.7 18.6 183 189-393 14-201 (319)
84 PF13855 LRR_8: Leucine rich r 98.4 2.7E-07 5.9E-12 72.1 3.5 61 793-853 1-61 (61)
85 PRK05564 DNA polymerase III su 98.4 7.5E-06 1.6E-10 88.2 15.6 176 192-394 4-189 (313)
86 KOG3678 SARM protein (with ste 98.4 2.5E-06 5.4E-11 89.1 11.2 143 18-187 609-760 (832)
87 cd00009 AAA The AAA+ (ATPases 98.4 4.1E-06 9E-11 79.5 12.0 123 195-335 1-131 (151)
88 PRK12323 DNA polymerase III su 98.4 6.5E-06 1.4E-10 92.9 15.0 197 189-393 13-223 (700)
89 PRK14957 DNA polymerase III su 98.3 8.5E-06 1.8E-10 92.3 15.7 177 189-390 13-215 (546)
90 PRK14962 DNA polymerase III su 98.3 3.4E-05 7.4E-10 86.6 19.8 185 188-397 10-221 (472)
91 PRK09087 hypothetical protein; 98.3 1.6E-05 3.5E-10 80.5 15.6 139 215-395 44-195 (226)
92 PF14516 AAA_35: AAA-like doma 98.3 0.00028 6.1E-09 76.3 25.6 207 187-402 6-246 (331)
93 PRK14956 DNA polymerase III su 98.3 3E-05 6.6E-10 85.4 18.1 192 189-391 15-218 (484)
94 PRK13341 recombination factor 98.3 7.3E-05 1.6E-09 88.2 22.4 172 189-391 25-213 (725)
95 TIGR02397 dnaX_nterm DNA polym 98.3 2.9E-05 6.2E-10 85.9 18.3 183 189-396 11-219 (355)
96 KOG0531 Protein phosphatase 1, 98.3 1.2E-07 2.5E-12 106.7 -1.2 198 619-855 69-269 (414)
97 PRK14964 DNA polymerase III su 98.3 7.1E-05 1.5E-09 83.6 20.6 179 189-392 10-214 (491)
98 PRK08691 DNA polymerase III su 98.3 1E-05 2.2E-10 92.5 14.1 193 189-393 13-218 (709)
99 COG1474 CDC6 Cdc6-related prot 98.3 3.9E-05 8.5E-10 83.1 18.0 191 190-387 15-229 (366)
100 PLN03150 hypothetical protein; 98.3 1.5E-06 3.2E-11 102.3 7.5 105 716-852 420-526 (623)
101 PRK09112 DNA polymerase III su 98.3 2.1E-05 4.5E-10 85.0 15.6 196 187-395 18-240 (351)
102 PRK07940 DNA polymerase III su 98.2 3.4E-05 7.4E-10 84.5 17.3 187 192-395 5-213 (394)
103 PRK14087 dnaA chromosomal repl 98.2 2.6E-05 5.7E-10 87.5 16.5 165 216-398 142-322 (450)
104 PRK15386 type III secretion pr 98.2 3.3E-06 7.1E-11 90.6 8.8 135 641-803 48-187 (426)
105 PRK07994 DNA polymerase III su 98.2 1.9E-05 4E-10 91.0 15.4 194 189-394 13-219 (647)
106 PRK06645 DNA polymerase III su 98.2 4.1E-05 8.9E-10 86.3 17.7 189 189-392 18-226 (507)
107 TIGR00678 holB DNA polymerase 98.2 5.3E-05 1.1E-09 75.1 16.3 89 295-391 95-187 (188)
108 KOG2028 ATPase related to the 98.2 1.2E-05 2.7E-10 82.0 10.7 173 191-389 137-330 (554)
109 PRK05896 DNA polymerase III su 98.2 3.8E-05 8.1E-10 87.1 15.5 190 189-390 13-215 (605)
110 PRK14951 DNA polymerase III su 98.1 5.6E-05 1.2E-09 86.9 17.0 194 189-393 13-223 (618)
111 PRK14958 DNA polymerase III su 98.1 0.0001 2.2E-09 83.9 18.8 180 189-393 13-218 (509)
112 PRK03992 proteasome-activating 98.1 4E-05 8.7E-10 84.7 15.2 172 191-388 130-336 (389)
113 PRK14969 DNA polymerase III su 98.1 5.6E-05 1.2E-09 86.5 15.9 190 190-391 14-216 (527)
114 PRK14955 DNA polymerase III su 98.1 0.00012 2.6E-09 81.5 17.9 199 189-393 13-226 (397)
115 KOG2120 SCF ubiquitin ligase, 98.1 5.5E-08 1.2E-12 96.2 -7.8 182 715-913 186-377 (419)
116 TIGR02881 spore_V_K stage V sp 98.1 4.4E-05 9.5E-10 79.9 13.2 153 193-365 7-192 (261)
117 KOG4341 F-box protein containi 98.1 1.2E-07 2.6E-12 98.4 -5.8 275 618-907 160-460 (483)
118 PRK14088 dnaA chromosomal repl 98.1 0.00013 2.8E-09 81.9 17.4 157 216-393 131-303 (440)
119 PHA02544 44 clamp loader, smal 98.1 4.3E-05 9.2E-10 82.9 13.2 150 188-362 17-171 (316)
120 KOG0531 Protein phosphatase 1, 98.1 9.6E-07 2.1E-11 99.3 0.4 102 556-679 92-196 (414)
121 PRK09111 DNA polymerase III su 98.0 0.00021 4.5E-09 82.6 19.2 195 189-394 21-232 (598)
122 TIGR02903 spore_lon_C ATP-depe 98.0 0.0001 2.2E-09 86.2 16.5 50 188-239 150-199 (615)
123 PRK14970 DNA polymerase III su 98.0 0.00015 3.2E-09 80.4 17.0 181 189-392 14-206 (367)
124 PRK00149 dnaA chromosomal repl 98.0 0.00013 2.9E-09 82.8 16.7 178 194-393 125-320 (450)
125 KOG1859 Leucine-rich repeat pr 98.0 7.1E-07 1.5E-11 98.7 -1.7 105 793-913 187-293 (1096)
126 PRK14954 DNA polymerase III su 98.0 0.00038 8.2E-09 80.6 19.9 196 189-390 13-223 (620)
127 TIGR00362 DnaA chromosomal rep 98.0 0.0002 4.3E-09 80.3 17.3 157 216-394 137-309 (405)
128 PRK14959 DNA polymerase III su 98.0 0.00018 3.9E-09 82.2 16.8 195 190-398 14-224 (624)
129 PRK14952 DNA polymerase III su 98.0 0.00065 1.4E-08 78.1 21.3 190 189-390 10-214 (584)
130 PRK06620 hypothetical protein; 98.0 9.2E-05 2E-09 74.3 12.7 134 216-393 45-187 (214)
131 PRK07764 DNA polymerase III su 98.0 0.00045 9.8E-09 82.6 20.6 189 189-392 12-218 (824)
132 PRK07133 DNA polymerase III su 98.0 0.00018 4E-09 83.4 16.7 190 189-392 15-216 (725)
133 KOG0989 Replication factor C, 98.0 5.7E-05 1.2E-09 76.1 10.7 184 188-389 32-224 (346)
134 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00012 2.6E-09 88.6 15.5 195 171-388 169-389 (852)
135 PRK14953 DNA polymerase III su 97.9 0.00031 6.7E-09 79.5 17.5 194 190-395 14-220 (486)
136 PRK12422 chromosomal replicati 97.9 0.00022 4.7E-09 79.8 16.2 151 216-388 142-306 (445)
137 PRK14950 DNA polymerase III su 97.9 0.00018 3.9E-09 84.1 15.9 196 189-395 13-221 (585)
138 PTZ00361 26 proteosome regulat 97.9 9.1E-05 2E-09 81.9 12.6 155 190-366 181-369 (438)
139 PRK08451 DNA polymerase III su 97.9 0.00033 7.1E-09 79.2 17.2 195 189-394 11-217 (535)
140 TIGR02639 ClpA ATP-dependent C 97.9 0.00015 3.3E-09 87.2 15.4 155 189-364 179-358 (731)
141 PRK14086 dnaA chromosomal repl 97.9 0.0004 8.7E-09 79.0 17.5 156 216-393 315-486 (617)
142 KOG1859 Leucine-rich repeat pr 97.9 1.3E-07 2.9E-12 104.3 -10.1 129 716-857 166-295 (1096)
143 COG3267 ExeA Type II secretory 97.9 0.00097 2.1E-08 66.0 17.4 178 213-397 49-247 (269)
144 TIGR03689 pup_AAA proteasome A 97.9 0.00025 5.4E-09 79.7 15.2 160 191-364 181-378 (512)
145 PRK06305 DNA polymerase III su 97.8 0.00034 7.4E-09 78.6 15.8 194 189-391 14-218 (451)
146 PTZ00454 26S protease regulato 97.8 0.00033 7.2E-09 77.1 15.3 175 189-389 142-351 (398)
147 COG2255 RuvB Holliday junction 97.8 0.00051 1.1E-08 68.7 14.8 259 188-483 22-311 (332)
148 PRK14971 DNA polymerase III su 97.8 0.0021 4.5E-08 75.1 22.5 190 190-392 15-219 (614)
149 PRK14948 DNA polymerase III su 97.8 0.0019 4.2E-08 75.3 21.9 196 189-395 13-222 (620)
150 KOG2982 Uncharacterized conser 97.8 4.4E-06 9.6E-11 83.0 0.1 106 793-907 173-287 (418)
151 PRK09376 rho transcription ter 97.8 4.6E-05 9.9E-10 81.1 7.5 93 216-310 170-270 (416)
152 PRK07399 DNA polymerase III su 97.8 0.0021 4.6E-08 68.6 19.8 192 192-395 4-221 (314)
153 PRK10865 protein disaggregatio 97.8 0.00044 9.5E-09 84.2 16.3 51 189-241 175-225 (857)
154 PRK06647 DNA polymerase III su 97.8 0.0014 2.9E-08 75.6 19.5 193 189-393 13-218 (563)
155 CHL00095 clpC Clp protease ATP 97.8 0.00033 7.1E-09 85.5 15.1 151 191-362 178-352 (821)
156 PRK05707 DNA polymerase III su 97.8 0.00088 1.9E-08 71.8 16.6 93 297-395 107-203 (328)
157 PRK05563 DNA polymerase III su 97.7 0.00083 1.8E-08 77.7 17.5 191 189-392 13-217 (559)
158 cd01128 rho_factor Transcripti 97.7 3.9E-05 8.5E-10 78.4 5.7 94 215-310 16-117 (249)
159 KOG2227 Pre-initiation complex 97.7 0.00098 2.1E-08 71.3 15.9 172 189-364 147-338 (529)
160 TIGR02880 cbbX_cfxQ probable R 97.7 0.0006 1.3E-08 71.9 14.3 128 217-364 60-208 (284)
161 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00062 1.3E-08 83.3 15.9 154 190-363 171-348 (852)
162 TIGR00767 rho transcription te 97.7 0.00014 3E-09 78.0 8.5 93 216-310 169-269 (415)
163 KOG2543 Origin recognition com 97.6 0.0021 4.6E-08 67.0 16.5 167 191-364 5-193 (438)
164 PF08937 DUF1863: MTH538 TIR-l 97.6 0.00012 2.5E-09 67.3 6.8 89 22-115 1-107 (130)
165 PF12799 LRR_4: Leucine Rich r 97.6 4.8E-05 1E-09 54.2 3.2 38 818-856 2-39 (44)
166 PF05621 TniB: Bacterial TniB 97.6 0.0016 3.4E-08 67.1 15.4 198 192-393 34-259 (302)
167 CHL00176 ftsH cell division pr 97.6 0.0008 1.7E-08 78.4 14.8 172 191-387 182-386 (638)
168 COG0593 DnaA ATPase involved i 97.6 0.0014 3E-08 70.9 15.2 133 215-366 113-259 (408)
169 PRK08116 hypothetical protein; 97.6 0.00046 1E-08 71.9 11.3 102 216-334 115-221 (268)
170 CHL00181 cbbX CbbX; Provisiona 97.6 0.0029 6.3E-08 66.7 17.4 129 217-365 61-210 (287)
171 TIGR01241 FtsH_fam ATP-depende 97.6 0.00076 1.7E-08 77.6 14.1 174 190-388 53-259 (495)
172 PF00004 AAA: ATPase family as 97.6 0.00053 1.1E-08 63.5 10.4 23 218-240 1-23 (132)
173 PRK14965 DNA polymerase III su 97.6 0.0013 2.7E-08 76.6 15.3 187 189-390 13-215 (576)
174 COG1373 Predicted ATPase (AAA+ 97.5 0.0011 2.4E-08 73.3 14.1 162 199-394 24-191 (398)
175 PRK11034 clpA ATP-dependent Cl 97.5 0.00079 1.7E-08 80.0 13.6 154 191-364 185-362 (758)
176 PRK08181 transposase; Validate 97.5 0.00059 1.3E-08 70.6 10.7 35 216-250 107-141 (269)
177 PRK12377 putative replication 97.5 0.00029 6.3E-09 71.9 8.2 36 215-250 101-136 (248)
178 PRK07952 DNA replication prote 97.5 0.0038 8.3E-08 63.7 16.3 50 201-250 85-134 (244)
179 PF05673 DUF815: Protein of un 97.5 0.0092 2E-07 59.6 18.3 53 188-242 23-79 (249)
180 TIGR00602 rad24 checkpoint pro 97.5 0.00071 1.5E-08 78.2 11.9 53 188-240 80-135 (637)
181 smart00382 AAA ATPases associa 97.4 0.00041 8.8E-09 65.1 8.0 35 216-250 3-37 (148)
182 COG1222 RPT1 ATP-dependent 26S 97.4 0.0023 5.1E-08 66.3 13.4 171 192-389 151-357 (406)
183 PRK06921 hypothetical protein; 97.4 0.00029 6.3E-09 73.3 7.0 37 215-251 117-154 (266)
184 PF01695 IstB_IS21: IstB-like 97.4 0.00017 3.8E-09 70.0 5.0 35 216-250 48-82 (178)
185 KOG4579 Leucine-rich repeat (L 97.4 1.6E-05 3.4E-10 70.0 -2.1 40 817-857 77-116 (177)
186 PRK08769 DNA polymerase III su 97.4 0.0049 1.1E-07 65.5 15.9 93 295-395 112-208 (319)
187 PF08357 SEFIR: SEFIR domain; 97.4 0.00019 4.2E-09 68.0 4.8 64 23-86 2-70 (150)
188 KOG2982 Uncharacterized conser 97.3 4.8E-05 1E-09 75.8 0.1 181 715-911 72-261 (418)
189 TIGR01243 CDC48 AAA family ATP 97.3 0.0027 5.8E-08 76.9 15.0 174 191-389 177-381 (733)
190 PRK10536 hypothetical protein; 97.3 0.0013 2.9E-08 66.3 9.9 53 192-248 55-109 (262)
191 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0025 5.3E-08 72.0 13.2 153 192-366 228-407 (489)
192 COG5238 RNA1 Ran GTPase-activa 97.3 2.3E-05 5E-10 77.0 -2.5 69 618-687 26-110 (388)
193 PRK09183 transposase/IS protei 97.3 0.0011 2.4E-08 68.8 9.3 35 216-250 103-137 (259)
194 KOG1644 U2-associated snRNP A' 97.3 0.00028 6.1E-09 66.8 4.3 62 793-854 64-126 (233)
195 PRK06835 DNA replication prote 97.3 0.00087 1.9E-08 71.6 8.5 36 216-251 184-219 (329)
196 PF12799 LRR_4: Leucine Rich r 97.2 0.00035 7.6E-09 49.8 3.6 36 715-750 2-37 (44)
197 KOG3665 ZYG-1-like serine/thre 97.2 7.4E-05 1.6E-09 87.7 0.2 160 735-907 120-283 (699)
198 KOG2228 Origin recognition com 97.2 0.0056 1.2E-07 62.9 13.4 173 191-364 23-219 (408)
199 KOG0991 Replication factor C, 97.2 0.0033 7.1E-08 60.8 11.1 50 189-240 24-73 (333)
200 KOG4579 Leucine-rich repeat (L 97.2 2.4E-05 5.1E-10 68.9 -3.1 83 816-911 52-135 (177)
201 PRK11331 5-methylcytosine-spec 97.2 0.0009 2E-08 73.1 8.0 56 192-251 175-232 (459)
202 TIGR01243 CDC48 AAA family ATP 97.2 0.0043 9.2E-08 75.2 14.5 172 192-388 453-656 (733)
203 PRK06526 transposase; Provisio 97.2 0.00048 1E-08 70.9 5.1 33 216-248 99-131 (254)
204 COG1484 DnaC DNA replication p 97.2 0.0024 5.3E-08 65.8 10.2 37 214-250 104-140 (254)
205 COG0466 Lon ATP-dependent Lon 97.1 0.0016 3.5E-08 73.6 9.1 159 192-364 323-508 (782)
206 COG5238 RNA1 Ran GTPase-activa 97.1 0.00018 4E-09 70.9 1.5 212 691-911 29-284 (388)
207 PRK08058 DNA polymerase III su 97.1 0.016 3.4E-07 62.8 16.6 159 193-363 6-181 (329)
208 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0065 1.4E-07 63.5 12.9 36 201-240 11-46 (262)
209 PRK08939 primosomal protein Dn 97.1 0.0036 7.7E-08 66.5 11.0 55 196-250 135-191 (306)
210 KOG0744 AAA+-type ATPase [Post 97.1 0.0036 7.8E-08 63.7 10.2 80 215-308 177-262 (423)
211 PF10443 RNA12: RNA12 protein; 97.1 0.034 7.3E-07 60.2 18.1 194 197-401 1-284 (431)
212 KOG0741 AAA+-type ATPase [Post 97.1 0.017 3.8E-07 62.8 15.8 130 213-363 536-685 (744)
213 PF04665 Pox_A32: Poxvirus A32 97.0 0.00094 2E-08 67.1 5.7 34 217-250 15-48 (241)
214 PRK07993 DNA polymerase III su 97.0 0.024 5.3E-07 61.0 16.8 176 201-393 11-202 (334)
215 PRK11889 flhF flagellar biosyn 97.0 0.02 4.3E-07 61.5 15.6 37 214-250 240-276 (436)
216 KOG3665 ZYG-1-like serine/thre 97.0 0.00015 3.2E-09 85.2 -0.2 130 715-854 123-263 (699)
217 COG2812 DnaX DNA polymerase II 97.0 0.011 2.4E-07 66.2 14.3 189 190-389 14-214 (515)
218 PRK06090 DNA polymerase III su 97.0 0.059 1.3E-06 57.3 19.1 90 296-395 108-201 (319)
219 PRK06871 DNA polymerase III su 97.0 0.043 9.4E-07 58.5 18.1 172 201-392 11-200 (325)
220 KOG0730 AAA+-type ATPase [Post 97.0 0.0079 1.7E-07 67.5 12.6 149 196-366 438-617 (693)
221 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0029 6.2E-08 59.4 8.0 118 216-335 3-139 (159)
222 KOG1644 U2-associated snRNP A' 96.9 0.0011 2.5E-08 62.8 4.9 104 737-850 42-149 (233)
223 TIGR02639 ClpA ATP-dependent C 96.9 0.0068 1.5E-07 73.2 12.7 49 192-240 454-509 (731)
224 PRK10787 DNA-binding ATP-depen 96.9 0.036 7.8E-07 66.8 18.6 159 192-364 322-506 (784)
225 PRK09361 radB DNA repair and r 96.9 0.0023 5.1E-08 65.4 7.5 50 202-251 10-59 (225)
226 cd01131 PilT Pilus retraction 96.9 0.0036 7.7E-08 62.3 8.4 111 216-337 2-112 (198)
227 PLN00020 ribulose bisphosphate 96.9 0.017 3.7E-07 61.1 13.5 30 213-242 146-175 (413)
228 PF02562 PhoH: PhoH-like prote 96.9 0.005 1.1E-07 60.5 9.0 124 197-334 5-156 (205)
229 KOG0733 Nuclear AAA ATPase (VC 96.9 0.016 3.4E-07 64.3 13.4 153 191-365 189-375 (802)
230 PRK14974 cell division protein 96.9 0.02 4.4E-07 61.3 14.2 29 214-242 139-167 (336)
231 PF07693 KAP_NTPase: KAP famil 96.8 0.039 8.5E-07 60.1 16.5 45 198-242 2-47 (325)
232 cd01133 F1-ATPase_beta F1 ATP 96.8 0.006 1.3E-07 62.7 9.2 93 216-310 70-177 (274)
233 PF13177 DNA_pol3_delta2: DNA 96.8 0.02 4.4E-07 54.7 12.3 138 196-352 1-162 (162)
234 COG0542 clpA ATP-binding subun 96.8 0.0098 2.1E-07 69.4 11.8 118 192-319 491-618 (786)
235 KOG2739 Leucine-rich acidic nu 96.8 0.00058 1.3E-08 67.7 1.6 83 815-906 63-150 (260)
236 PRK04296 thymidine kinase; Pro 96.8 0.0043 9.4E-08 61.2 7.7 111 216-335 3-117 (190)
237 TIGR00064 ftsY signal recognit 96.7 0.012 2.6E-07 61.5 11.3 38 213-250 70-107 (272)
238 COG1223 Predicted ATPase (AAA+ 96.7 0.019 4.1E-07 56.7 11.5 172 192-388 121-318 (368)
239 TIGR00763 lon ATP-dependent pr 96.7 0.016 3.5E-07 70.4 13.9 51 193-243 321-375 (775)
240 cd01394 radB RadB. The archaea 96.7 0.0082 1.8E-07 61.1 9.7 51 201-251 5-55 (218)
241 PRK10865 protein disaggregatio 96.7 0.014 3E-07 71.4 13.1 59 192-250 568-633 (857)
242 TIGR02237 recomb_radB DNA repa 96.7 0.0038 8.2E-08 63.1 7.1 45 207-251 4-48 (209)
243 PRK06964 DNA polymerase III su 96.7 0.15 3.2E-06 55.0 19.3 90 296-395 132-225 (342)
244 COG0470 HolB ATPase involved i 96.7 0.015 3.3E-07 63.3 12.4 147 193-356 2-173 (325)
245 PRK08118 topology modulation p 96.7 0.0014 3E-08 63.1 3.5 32 217-248 3-37 (167)
246 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.4E-08 59.2 3.6 23 217-239 1-23 (121)
247 cd01120 RecA-like_NTPases RecA 96.7 0.013 2.8E-07 56.4 10.4 35 217-251 1-35 (165)
248 TIGR03345 VI_ClpV1 type VI sec 96.7 0.011 2.4E-07 71.9 11.9 50 192-241 566-622 (852)
249 smart00763 AAA_PrkA PrkA AAA d 96.7 0.002 4.2E-08 68.6 4.8 49 193-241 52-104 (361)
250 cd01393 recA_like RecA is a b 96.6 0.013 2.7E-07 60.1 10.7 50 202-251 6-61 (226)
251 PRK06067 flagellar accessory p 96.6 0.013 2.7E-07 60.4 10.6 51 201-251 11-61 (234)
252 KOG1514 Origin recognition com 96.6 0.064 1.4E-06 60.9 16.4 166 190-364 394-589 (767)
253 COG0542 clpA ATP-binding subun 96.6 0.0095 2.1E-07 69.6 10.4 154 190-363 168-345 (786)
254 PRK12608 transcription termina 96.6 0.0076 1.6E-07 64.5 8.7 103 204-309 123-233 (380)
255 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.015 3.3E-07 59.8 10.7 51 201-251 7-57 (237)
256 PF00448 SRP54: SRP54-type pro 96.6 0.0039 8.5E-08 61.5 6.0 36 215-250 1-36 (196)
257 PRK05541 adenylylsulfate kinas 96.6 0.005 1.1E-07 60.2 6.8 37 214-250 6-42 (176)
258 TIGR03346 chaperone_ClpB ATP-d 96.6 0.013 2.7E-07 72.1 11.6 59 192-250 565-630 (852)
259 PRK07261 topology modulation p 96.5 0.008 1.7E-07 58.2 7.7 23 217-239 2-24 (171)
260 PRK06696 uridine kinase; Valid 96.5 0.0049 1.1E-07 62.8 6.5 47 196-242 2-49 (223)
261 PHA00729 NTP-binding motif con 96.5 0.011 2.5E-07 58.7 8.6 27 214-240 16-42 (226)
262 PRK00771 signal recognition pa 96.5 0.063 1.4E-06 59.8 15.4 29 214-242 94-122 (437)
263 COG2607 Predicted ATPase (AAA+ 96.5 0.059 1.3E-06 53.0 13.0 57 188-246 56-116 (287)
264 KOG0735 AAA+-type ATPase [Post 96.5 0.055 1.2E-06 61.3 14.5 157 215-394 431-615 (952)
265 PRK07667 uridine kinase; Provi 96.5 0.006 1.3E-07 60.4 6.6 42 201-242 3-44 (193)
266 cd00983 recA RecA is a bacter 96.5 0.01 2.2E-07 62.9 8.5 50 202-251 41-91 (325)
267 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.012 2.6E-07 60.7 9.0 49 203-251 7-61 (235)
268 COG1618 Predicted nucleotide k 96.4 0.0033 7.2E-08 57.5 4.1 31 216-246 6-37 (179)
269 PF14532 Sigma54_activ_2: Sigm 96.4 0.0031 6.7E-08 58.7 4.2 44 195-238 1-44 (138)
270 TIGR02012 tigrfam_recA protein 96.4 0.011 2.4E-07 62.6 8.6 50 202-251 41-91 (321)
271 COG1066 Sms Predicted ATP-depe 96.4 0.02 4.4E-07 60.8 10.2 96 201-307 79-179 (456)
272 PRK10733 hflB ATP-dependent me 96.4 0.025 5.5E-07 66.9 12.4 128 217-366 187-337 (644)
273 PRK04132 replication factor C 96.4 0.041 8.9E-07 65.8 14.0 153 220-393 569-729 (846)
274 TIGR02902 spore_lonB ATP-depen 96.4 0.025 5.3E-07 65.4 11.9 47 191-239 64-110 (531)
275 CHL00095 clpC Clp protease ATP 96.4 0.023 5E-07 69.5 12.3 49 192-240 509-564 (821)
276 PRK08699 DNA polymerase III su 96.4 0.057 1.2E-06 58.0 13.6 66 298-363 115-184 (325)
277 PRK09354 recA recombinase A; P 96.3 0.012 2.7E-07 62.7 8.4 99 201-306 45-148 (349)
278 cd01121 Sms Sms (bacterial rad 96.3 0.023 4.9E-07 62.1 10.5 51 201-251 68-118 (372)
279 PF00158 Sigma54_activat: Sigm 96.3 0.023 5E-07 54.5 9.2 44 194-237 1-44 (168)
280 KOG1947 Leucine rich repeat pr 96.3 0.00048 1E-08 80.0 -3.1 61 620-680 186-254 (482)
281 TIGR01425 SRP54_euk signal rec 96.2 0.23 5E-06 54.9 17.7 36 214-249 99-134 (429)
282 KOG0731 AAA+-type ATPase conta 96.2 0.18 3.9E-06 58.9 17.3 177 191-391 310-520 (774)
283 KOG2035 Replication factor C, 96.2 0.25 5.4E-06 49.7 15.7 208 192-415 13-259 (351)
284 TIGR00708 cobA cob(I)alamin ad 96.2 0.03 6.4E-07 53.3 9.1 119 215-334 5-140 (173)
285 cd02027 APSK Adenosine 5'-phos 96.2 0.041 8.8E-07 51.9 10.1 25 217-241 1-25 (149)
286 PRK11034 clpA ATP-dependent Cl 96.2 0.03 6.5E-07 66.9 11.2 49 192-240 458-513 (758)
287 KOG0733 Nuclear AAA ATPase (VC 96.1 0.081 1.8E-06 58.9 13.3 129 215-365 545-693 (802)
288 COG4088 Predicted nucleotide k 96.1 0.031 6.6E-07 53.4 8.7 29 216-244 2-30 (261)
289 TIGR01817 nifA Nif-specific re 96.1 0.087 1.9E-06 61.5 14.7 51 189-239 193-243 (534)
290 PRK05986 cob(I)alamin adenolsy 96.1 0.027 5.9E-07 54.4 8.6 118 215-334 22-158 (191)
291 KOG2123 Uncharacterized conser 96.1 0.00028 6E-09 69.9 -4.9 100 793-905 19-123 (388)
292 KOG0734 AAA+-type ATPase conta 96.1 0.061 1.3E-06 58.8 11.8 48 192-239 304-361 (752)
293 cd00544 CobU Adenosylcobinamid 96.1 0.02 4.4E-07 54.9 7.6 30 218-250 2-31 (169)
294 PRK15455 PrkA family serine pr 96.0 0.0075 1.6E-07 67.6 5.1 49 193-241 77-129 (644)
295 TIGR01420 pilT_fam pilus retra 96.0 0.018 4E-07 62.6 8.1 110 215-335 122-231 (343)
296 PRK12724 flagellar biosynthesi 96.0 0.15 3.2E-06 55.8 14.6 25 215-239 223-247 (432)
297 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.028 6.2E-07 58.5 9.0 38 214-251 35-72 (259)
298 PF01583 APS_kinase: Adenylyls 96.0 0.01 2.2E-07 55.5 5.1 35 216-250 3-37 (156)
299 TIGR00959 ffh signal recogniti 96.0 0.16 3.4E-06 56.5 15.1 27 214-240 98-124 (428)
300 PRK05800 cobU adenosylcobinami 96.0 0.012 2.6E-07 56.6 5.6 23 217-239 3-25 (170)
301 COG0464 SpoVK ATPases of the A 96.0 0.046 1E-06 63.2 11.6 131 214-366 275-425 (494)
302 PRK11608 pspF phage shock prot 96.0 0.096 2.1E-06 56.6 13.2 47 191-237 5-51 (326)
303 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.05 1.1E-06 53.5 10.1 23 217-239 1-23 (183)
304 COG0488 Uup ATPase components 95.9 0.34 7.3E-06 55.5 17.7 57 288-350 449-511 (530)
305 PRK04328 hypothetical protein; 95.9 0.063 1.4E-06 55.6 10.9 50 202-251 10-59 (249)
306 COG1875 NYN ribonuclease and A 95.9 0.052 1.1E-06 56.7 9.9 52 195-248 227-281 (436)
307 KOG0728 26S proteasome regulat 95.9 0.49 1.1E-05 46.7 15.9 146 193-364 147-331 (404)
308 KOG0743 AAA+-type ATPase [Post 95.9 0.3 6.4E-06 53.1 15.8 150 215-399 235-413 (457)
309 PF13671 AAA_33: AAA domain; P 95.9 0.041 8.8E-07 51.6 8.7 24 217-240 1-24 (143)
310 TIGR00416 sms DNA repair prote 95.9 0.043 9.4E-07 61.8 10.2 51 201-251 80-130 (454)
311 PRK12723 flagellar biosynthesi 95.9 0.093 2E-06 57.4 12.4 27 214-240 173-199 (388)
312 TIGR02974 phageshock_pspF psp 95.9 0.14 3.1E-06 55.3 13.8 45 194-238 1-45 (329)
313 PRK10416 signal recognition pa 95.8 0.063 1.4E-06 57.4 10.9 29 214-242 113-141 (318)
314 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.04 8.6E-07 51.6 8.4 103 215-338 26-131 (144)
315 cd01122 GP4d_helicase GP4d_hel 95.8 0.09 2E-06 55.5 11.9 52 214-271 29-81 (271)
316 cd01129 PulE-GspE PulE/GspE Th 95.8 0.04 8.7E-07 57.4 9.0 100 201-315 69-168 (264)
317 PF08423 Rad51: Rad51; InterP 95.8 0.03 6.6E-07 58.0 7.9 50 202-251 25-80 (256)
318 PF13238 AAA_18: AAA domain; P 95.8 0.0083 1.8E-07 55.1 3.4 22 218-239 1-22 (129)
319 PF07726 AAA_3: ATPase family 95.8 0.0069 1.5E-07 53.9 2.6 30 218-247 2-31 (131)
320 COG0468 RecA RecA/RadA recombi 95.7 0.028 6.2E-07 58.1 7.4 50 203-252 48-97 (279)
321 PRK08533 flagellar accessory p 95.7 0.054 1.2E-06 55.2 9.5 47 204-250 13-59 (230)
322 COG0572 Udk Uridine kinase [Nu 95.7 0.016 3.5E-07 56.9 5.2 30 213-242 6-35 (218)
323 cd03115 SRP The signal recogni 95.7 0.035 7.5E-07 54.0 7.7 34 217-250 2-35 (173)
324 TIGR03499 FlhF flagellar biosy 95.7 0.053 1.1E-06 57.2 9.5 29 214-242 193-221 (282)
325 PRK11823 DNA repair protein Ra 95.7 0.064 1.4E-06 60.4 10.7 51 201-251 66-116 (446)
326 PF00485 PRK: Phosphoribulokin 95.7 0.01 2.2E-07 59.0 3.8 26 217-242 1-26 (194)
327 PF13604 AAA_30: AAA domain; P 95.6 0.082 1.8E-06 52.4 10.0 115 202-336 8-133 (196)
328 TIGR03880 KaiC_arch_3 KaiC dom 95.6 0.069 1.5E-06 54.5 9.9 49 203-251 4-52 (224)
329 PF03215 Rad17: Rad17 cell cyc 95.6 0.087 1.9E-06 60.1 11.4 56 192-249 19-77 (519)
330 TIGR02238 recomb_DMC1 meiotic 95.6 0.06 1.3E-06 57.4 9.5 50 202-251 83-138 (313)
331 PRK00889 adenylylsulfate kinas 95.6 0.035 7.5E-07 54.2 7.2 35 215-249 4-38 (175)
332 PRK05973 replicative DNA helic 95.6 0.066 1.4E-06 54.2 9.2 37 214-250 63-99 (237)
333 PRK05022 anaerobic nitric oxid 95.6 0.2 4.4E-06 57.9 14.5 50 190-239 185-234 (509)
334 PRK13531 regulatory ATPase Rav 95.5 0.014 3.1E-07 64.6 4.7 46 192-241 20-65 (498)
335 PF10236 DAP3: Mitochondrial r 95.5 0.46 1E-05 50.8 16.1 48 345-392 258-306 (309)
336 PRK14722 flhF flagellar biosyn 95.5 0.12 2.5E-06 56.2 11.4 36 215-250 137-174 (374)
337 cd03222 ABC_RNaseL_inhibitor T 95.5 0.063 1.4E-06 52.0 8.4 33 216-249 26-58 (177)
338 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.6E-07 47.0 2.9 23 217-239 1-23 (69)
339 KOG2004 Mitochondrial ATP-depe 95.5 0.017 3.6E-07 65.3 4.9 52 192-243 411-466 (906)
340 PRK13695 putative NTPase; Prov 95.4 0.046 1E-06 53.2 7.5 24 217-240 2-25 (174)
341 PF08433 KTI12: Chromatin asso 95.4 0.04 8.7E-07 57.3 7.3 34 216-249 2-35 (270)
342 cd03247 ABCC_cytochrome_bd The 95.4 0.11 2.4E-06 50.7 10.1 34 216-250 29-62 (178)
343 cd03223 ABCD_peroxisomal_ALDP 95.4 0.064 1.4E-06 51.7 8.2 25 215-239 27-51 (166)
344 TIGR02858 spore_III_AA stage I 95.4 0.074 1.6E-06 55.3 9.0 116 215-337 111-232 (270)
345 TIGR00150 HI0065_YjeE ATPase, 95.4 0.024 5.3E-07 51.5 4.8 40 200-239 7-46 (133)
346 COG5635 Predicted NTPase (NACH 95.4 0.14 3E-06 63.0 12.9 194 217-415 224-448 (824)
347 COG4608 AppF ABC-type oligopep 95.4 0.043 9.3E-07 55.6 7.0 124 215-340 39-176 (268)
348 cd03214 ABC_Iron-Siderophores_ 95.4 0.098 2.1E-06 51.2 9.6 119 215-337 25-161 (180)
349 PRK04301 radA DNA repair and r 95.3 0.086 1.9E-06 56.9 9.9 50 202-251 89-144 (317)
350 PTZ00301 uridine kinase; Provi 95.3 0.016 3.4E-07 57.9 3.8 29 215-243 3-31 (210)
351 cd03228 ABCC_MRP_Like The MRP 95.3 0.082 1.8E-06 51.3 8.8 125 215-348 28-167 (171)
352 KOG1969 DNA replication checkp 95.3 0.054 1.2E-06 61.6 8.2 77 213-309 324-400 (877)
353 PF00910 RNA_helicase: RNA hel 95.3 0.011 2.4E-07 52.1 2.4 26 218-243 1-26 (107)
354 KOG2739 Leucine-rich acidic nu 95.3 0.012 2.6E-07 58.7 2.8 59 621-680 42-102 (260)
355 PRK05703 flhF flagellar biosyn 95.3 0.21 4.5E-06 55.8 12.9 36 215-250 221-258 (424)
356 cd01125 repA Hexameric Replica 95.3 0.2 4.4E-06 51.6 12.1 24 217-240 3-26 (239)
357 PRK12726 flagellar biosynthesi 95.2 0.19 4.2E-06 54.0 11.8 37 214-250 205-241 (407)
358 TIGR03574 selen_PSTK L-seryl-t 95.2 0.058 1.3E-06 56.0 7.9 25 218-242 2-26 (249)
359 PTZ00494 tuzin-like protein; P 95.2 4.4 9.6E-05 44.2 21.4 165 188-364 367-544 (664)
360 COG2884 FtsE Predicted ATPase 95.2 0.13 2.8E-06 48.9 9.0 56 284-341 143-204 (223)
361 PRK15429 formate hydrogenlyase 95.2 0.053 1.1E-06 65.4 8.5 49 191-239 375-423 (686)
362 PF03308 ArgK: ArgK protein; 95.2 0.057 1.2E-06 54.4 7.2 41 202-242 16-56 (266)
363 PRK00625 shikimate kinase; Pro 95.2 0.015 3.3E-07 56.0 3.2 24 217-240 2-25 (173)
364 PRK07132 DNA polymerase III su 95.2 1.4 3.1E-05 46.6 18.0 166 201-394 5-184 (299)
365 TIGR00390 hslU ATP-dependent p 95.2 0.051 1.1E-06 59.1 7.3 52 192-243 12-75 (441)
366 cd03238 ABC_UvrA The excision 95.2 0.1 2.3E-06 50.5 8.9 23 215-237 21-43 (176)
367 PRK10867 signal recognition pa 95.2 0.12 2.5E-06 57.6 10.3 29 214-242 99-127 (433)
368 PRK08233 hypothetical protein; 95.2 0.016 3.5E-07 57.0 3.3 26 215-240 3-28 (182)
369 PRK03839 putative kinase; Prov 95.2 0.016 3.5E-07 56.8 3.3 24 217-240 2-25 (180)
370 PF00154 RecA: recA bacterial 95.1 0.091 2E-06 55.6 9.0 99 201-308 38-143 (322)
371 PRK06762 hypothetical protein; 95.1 0.018 3.9E-07 55.6 3.5 24 216-239 3-26 (166)
372 KOG0736 Peroxisome assembly fa 95.1 0.32 7E-06 55.9 13.5 93 193-307 673-775 (953)
373 PRK04040 adenylate kinase; Pro 95.1 0.022 4.7E-07 56.0 4.0 25 216-240 3-27 (188)
374 PRK12337 2-phosphoglycerate ki 95.1 0.047 1E-06 60.1 6.8 26 214-239 254-279 (475)
375 PRK05480 uridine/cytidine kina 95.1 0.021 4.5E-07 57.6 3.9 27 213-239 4-30 (209)
376 KOG0727 26S proteasome regulat 95.1 0.25 5.3E-06 48.7 10.8 51 193-243 156-217 (408)
377 cd03216 ABC_Carb_Monos_I This 95.0 0.064 1.4E-06 51.5 7.0 116 216-338 27-146 (163)
378 PRK10463 hydrogenase nickel in 95.0 0.059 1.3E-06 56.0 6.9 35 213-247 102-136 (290)
379 PLN03187 meiotic recombination 95.0 0.11 2.4E-06 55.9 9.3 50 202-251 113-168 (344)
380 PRK06217 hypothetical protein; 95.0 0.08 1.7E-06 52.0 7.7 24 217-240 3-26 (183)
381 cd03246 ABCC_Protease_Secretio 95.0 0.13 2.8E-06 50.0 9.1 34 216-250 29-62 (173)
382 KOG1947 Leucine rich repeat pr 95.0 0.0016 3.5E-08 75.5 -5.2 62 642-703 185-254 (482)
383 PF07728 AAA_5: AAA domain (dy 95.0 0.02 4.4E-07 53.3 3.3 22 218-239 2-23 (139)
384 TIGR02655 circ_KaiC circadian 94.9 0.072 1.6E-06 61.0 8.3 51 200-250 248-298 (484)
385 PRK09270 nucleoside triphospha 94.9 0.037 8E-07 56.6 5.3 32 212-243 30-61 (229)
386 TIGR00455 apsK adenylylsulfate 94.9 0.17 3.8E-06 49.7 9.9 28 214-241 17-44 (184)
387 KOG1970 Checkpoint RAD17-RFC c 94.9 0.62 1.3E-05 51.7 14.6 41 199-239 89-134 (634)
388 CHL00206 ycf2 Ycf2; Provisiona 94.9 0.16 3.5E-06 64.7 11.4 26 214-239 1629-1654(2281)
389 cd01858 NGP_1 NGP-1. Autoanti 94.9 0.19 4.1E-06 47.9 9.8 22 216-237 103-124 (157)
390 TIGR02788 VirB11 P-type DNA tr 94.9 0.063 1.4E-06 57.5 7.2 110 215-335 144-254 (308)
391 TIGR03600 phage_DnaB phage rep 94.9 0.82 1.8E-05 51.6 16.5 73 194-273 174-247 (421)
392 TIGR00450 mnmE_trmE_thdF tRNA 94.8 0.079 1.7E-06 59.6 8.1 22 217-238 205-226 (442)
393 PRK12727 flagellar biosynthesi 94.8 0.12 2.6E-06 58.0 9.2 29 214-242 349-377 (559)
394 cd02021 GntK Gluconate kinase 94.8 0.2 4.2E-06 47.4 9.7 23 217-239 1-23 (150)
395 cd01130 VirB11-like_ATPase Typ 94.8 0.038 8.2E-07 54.4 4.9 94 215-315 25-119 (186)
396 PRK05201 hslU ATP-dependent pr 94.8 0.07 1.5E-06 58.0 7.1 52 192-243 15-78 (443)
397 PRK06547 hypothetical protein; 94.8 0.028 6.1E-07 54.2 3.7 27 213-239 13-39 (172)
398 PRK00131 aroK shikimate kinase 94.8 0.026 5.6E-07 55.1 3.5 26 215-240 4-29 (175)
399 PF06068 TIP49: TIP49 C-termin 94.8 0.11 2.3E-06 55.1 8.1 58 191-248 23-83 (398)
400 COG0467 RAD55 RecA-superfamily 94.7 0.079 1.7E-06 55.4 7.4 47 205-251 13-59 (260)
401 TIGR00235 udk uridine kinase. 94.7 0.031 6.8E-07 56.2 4.1 27 214-240 5-31 (207)
402 PRK13947 shikimate kinase; Pro 94.7 0.025 5.4E-07 55.0 3.1 26 217-242 3-28 (171)
403 cd03281 ABC_MSH5_euk MutS5 hom 94.7 0.04 8.7E-07 55.4 4.7 23 215-237 29-51 (213)
404 TIGR01360 aden_kin_iso1 adenyl 94.6 0.028 6E-07 55.6 3.5 26 214-239 2-27 (188)
405 COG4133 CcmA ABC-type transpor 94.6 0.21 4.5E-06 47.5 8.8 33 216-248 29-61 (209)
406 COG3910 Predicted ATPase [Gene 94.6 0.32 7E-06 46.1 10.0 24 214-237 36-59 (233)
407 PTZ00088 adenylate kinase 1; P 94.6 0.15 3.2E-06 51.8 8.7 22 218-239 9-30 (229)
408 COG1224 TIP49 DNA helicase TIP 94.6 0.068 1.5E-06 55.6 6.2 57 190-246 37-96 (450)
409 COG1428 Deoxynucleoside kinase 94.6 0.027 5.9E-07 54.5 3.1 26 215-240 4-29 (216)
410 PRK06731 flhF flagellar biosyn 94.6 0.95 2.1E-05 47.1 14.6 36 215-250 75-110 (270)
411 PF00406 ADK: Adenylate kinase 94.6 0.08 1.7E-06 50.1 6.4 88 220-316 1-94 (151)
412 cd03230 ABC_DR_subfamily_A Thi 94.6 0.14 3E-06 49.8 8.2 35 215-250 26-60 (173)
413 PF00437 T2SE: Type II/IV secr 94.5 0.11 2.3E-06 54.9 7.9 128 192-334 104-232 (270)
414 cd02028 UMPK_like Uridine mono 94.5 0.04 8.8E-07 53.7 4.3 26 217-242 1-26 (179)
415 TIGR01351 adk adenylate kinase 94.5 0.16 3.6E-06 51.1 8.8 22 218-239 2-23 (210)
416 PRK03846 adenylylsulfate kinas 94.5 0.053 1.2E-06 54.0 5.1 38 213-250 22-59 (198)
417 COG0563 Adk Adenylate kinase a 94.5 0.18 3.8E-06 48.9 8.5 23 217-239 2-24 (178)
418 PRK09519 recA DNA recombinatio 94.5 0.15 3.4E-06 60.3 9.5 97 201-306 45-148 (790)
419 COG4618 ArpD ABC-type protease 94.5 0.24 5.2E-06 54.4 10.1 22 216-237 363-384 (580)
420 PF06309 Torsin: Torsin; Inte 94.5 0.14 3E-06 45.6 7.0 46 193-238 26-76 (127)
421 cd00227 CPT Chloramphenicol (C 94.4 0.033 7.2E-07 54.2 3.5 25 216-240 3-27 (175)
422 KOG0652 26S proteasome regulat 94.4 1.2 2.6E-05 44.3 13.8 53 191-243 170-233 (424)
423 PF13481 AAA_25: AAA domain; P 94.4 0.25 5.5E-06 49.0 9.9 25 216-240 33-57 (193)
424 COG1419 FlhF Flagellar GTP-bin 94.4 0.22 4.8E-06 53.7 9.6 23 215-237 203-226 (407)
425 COG3854 SpoIIIAA ncharacterize 94.4 0.2 4.4E-06 48.9 8.4 108 218-334 140-253 (308)
426 COG1102 Cmk Cytidylate kinase 94.4 0.034 7.4E-07 51.1 3.0 24 217-240 2-25 (179)
427 cd00984 DnaB_C DnaB helicase C 94.3 0.37 7.9E-06 49.8 11.2 53 213-271 11-64 (242)
428 TIGR02239 recomb_RAD51 DNA rep 94.3 0.21 4.6E-06 53.4 9.5 51 201-251 82-138 (316)
429 KOG0739 AAA+-type ATPase [Post 94.3 0.66 1.4E-05 47.2 12.0 49 192-240 133-191 (439)
430 PRK00279 adk adenylate kinase; 94.3 0.17 3.6E-06 51.3 8.3 23 217-239 2-24 (215)
431 COG1121 ZnuC ABC-type Mn/Zn tr 94.3 0.24 5.1E-06 50.3 9.1 51 287-339 148-204 (254)
432 TIGR01313 therm_gnt_kin carboh 94.3 0.22 4.8E-06 47.8 8.8 22 218-239 1-22 (163)
433 COG0529 CysC Adenylylsulfate k 94.2 0.069 1.5E-06 50.0 4.7 37 213-249 21-57 (197)
434 COG0003 ArsA Predicted ATPase 94.2 0.074 1.6E-06 56.4 5.7 35 215-249 2-36 (322)
435 TIGR02524 dot_icm_DotB Dot/Icm 94.2 0.069 1.5E-06 58.1 5.6 95 215-315 134-231 (358)
436 KOG3928 Mitochondrial ribosome 94.2 0.97 2.1E-05 48.4 13.5 53 344-399 404-460 (461)
437 PRK09280 F0F1 ATP synthase sub 94.2 0.15 3.2E-06 56.7 8.1 92 216-309 145-251 (463)
438 TIGR01650 PD_CobS cobaltochela 94.2 0.097 2.1E-06 55.3 6.4 52 188-243 41-92 (327)
439 PF00625 Guanylate_kin: Guanyl 94.1 0.053 1.2E-06 53.3 4.2 35 215-249 2-36 (183)
440 cd03217 ABC_FeS_Assembly ABC-t 94.1 0.15 3.2E-06 50.9 7.4 23 216-238 27-49 (200)
441 COG0703 AroK Shikimate kinase 94.1 0.041 8.8E-07 52.0 3.1 27 217-243 4-30 (172)
442 PLN03186 DNA repair protein RA 94.1 0.32 6.9E-06 52.5 10.3 51 201-251 109-165 (342)
443 PRK11388 DNA-binding transcrip 94.1 1 2.2E-05 54.0 15.8 48 191-238 324-371 (638)
444 PRK05439 pantothenate kinase; 94.1 0.071 1.5E-06 56.3 5.2 29 213-241 84-112 (311)
445 PRK13949 shikimate kinase; Pro 94.1 0.039 8.4E-07 53.3 3.0 24 217-240 3-26 (169)
446 PRK13948 shikimate kinase; Pro 94.1 0.044 9.5E-07 53.3 3.4 28 214-241 9-36 (182)
447 cd00071 GMPK Guanosine monopho 94.1 0.033 7.2E-07 51.6 2.4 25 218-242 2-26 (137)
448 PF13306 LRR_5: Leucine rich r 94.1 0.21 4.7E-06 45.6 7.9 38 813-851 54-91 (129)
449 KOG0651 26S proteasome regulat 94.1 0.17 3.7E-06 51.7 7.4 30 214-243 165-194 (388)
450 cd02024 NRK1 Nicotinamide ribo 94.0 0.035 7.6E-07 54.1 2.6 23 217-239 1-23 (187)
451 PF03205 MobB: Molybdopterin g 94.0 0.073 1.6E-06 49.4 4.6 35 216-250 1-36 (140)
452 COG3640 CooC CO dehydrogenase 94.0 0.07 1.5E-06 52.4 4.5 27 217-243 2-28 (255)
453 cd02020 CMPK Cytidine monophos 94.0 0.039 8.5E-07 52.0 2.9 23 217-239 1-23 (147)
454 TIGR02236 recomb_radA DNA repa 94.0 0.3 6.5E-06 52.6 10.0 50 202-251 82-137 (310)
455 PF13504 LRR_7: Leucine rich r 94.0 0.036 7.8E-07 30.2 1.5 15 842-856 2-16 (17)
456 PTZ00035 Rad51 protein; Provis 94.0 0.4 8.6E-06 51.9 10.8 51 201-251 104-160 (337)
457 PRK14723 flhF flagellar biosyn 94.0 0.43 9.3E-06 56.5 11.8 26 215-240 185-210 (767)
458 PF03266 NTPase_1: NTPase; In 94.0 0.045 9.7E-07 52.6 3.2 24 218-241 2-25 (168)
459 TIGR01069 mutS2 MutS2 family p 94.0 0.16 3.4E-06 61.3 8.4 111 295-415 401-521 (771)
460 cd03232 ABC_PDR_domain2 The pl 94.0 0.32 7E-06 48.1 9.5 24 215-238 33-56 (192)
461 TIGR03881 KaiC_arch_4 KaiC dom 94.0 0.11 2.3E-06 53.4 6.2 50 202-251 7-56 (229)
462 cd02025 PanK Pantothenate kina 94.0 0.039 8.4E-07 55.8 2.8 24 217-240 1-24 (220)
463 cd01124 KaiC KaiC is a circadi 93.9 0.1 2.2E-06 51.5 5.8 33 218-250 2-34 (187)
464 COG1120 FepC ABC-type cobalami 93.9 0.12 2.5E-06 52.8 6.1 23 215-237 28-50 (258)
465 COG1936 Predicted nucleotide k 93.9 0.043 9.3E-07 51.3 2.8 20 217-236 2-21 (180)
466 COG1703 ArgK Putative periplas 93.9 0.11 2.4E-06 53.1 5.8 42 203-244 39-80 (323)
467 cd01857 HSR1_MMR1 HSR1/MMR1. 93.9 0.41 9E-06 44.6 9.6 51 66-118 3-53 (141)
468 PRK14528 adenylate kinase; Pro 93.9 0.25 5.4E-06 48.6 8.4 24 216-239 2-25 (186)
469 TIGR03575 selen_PSTK_euk L-ser 93.9 0.19 4E-06 53.9 7.9 23 218-240 2-24 (340)
470 PF00560 LRR_1: Leucine Rich R 93.9 0.018 3.9E-07 33.9 0.2 15 843-857 2-16 (22)
471 PRK10923 glnG nitrogen regulat 93.9 1.4 3E-05 50.8 15.9 47 192-238 138-184 (469)
472 PRK12597 F0F1 ATP synthase sub 93.9 0.18 3.8E-06 56.3 8.0 92 216-310 144-251 (461)
473 COG1136 SalX ABC-type antimicr 93.9 0.44 9.5E-06 47.6 9.9 56 284-340 148-209 (226)
474 cd00464 SK Shikimate kinase (S 93.9 0.047 1E-06 51.9 3.2 22 218-239 2-23 (154)
475 PHA02244 ATPase-like protein 93.8 0.17 3.7E-06 54.2 7.5 48 191-242 95-146 (383)
476 PF09848 DUF2075: Uncharacteri 93.8 0.21 4.5E-06 54.9 8.5 36 216-251 2-39 (352)
477 PRK10751 molybdopterin-guanine 93.8 0.061 1.3E-06 51.5 3.8 29 214-242 5-33 (173)
478 cd00267 ABC_ATPase ABC (ATP-bi 93.8 0.099 2.1E-06 49.9 5.3 114 216-339 26-145 (157)
479 PLN02674 adenylate kinase 93.8 0.43 9.4E-06 48.6 10.0 24 216-239 32-55 (244)
480 cd03240 ABC_Rad50 The catalyti 93.8 0.3 6.6E-06 48.8 8.9 20 217-236 24-43 (204)
481 COG0714 MoxR-like ATPases [Gen 93.8 0.09 2E-06 57.1 5.5 52 192-247 24-75 (329)
482 TIGR03156 GTP_HflX GTP-binding 93.8 0.2 4.3E-06 54.6 8.1 178 38-237 19-211 (351)
483 cd01428 ADK Adenylate kinase ( 93.8 0.48 1E-05 47.0 10.4 22 218-239 2-23 (194)
484 COG0541 Ffh Signal recognition 93.8 1.3 2.9E-05 48.0 13.9 28 214-241 99-126 (451)
485 PF00006 ATP-synt_ab: ATP synt 93.7 0.095 2.1E-06 52.4 5.1 87 216-309 16-118 (215)
486 PF06745 KaiC: KaiC; InterPro 93.7 0.074 1.6E-06 54.3 4.5 49 203-251 7-56 (226)
487 COG0378 HypB Ni2+-binding GTPa 93.7 0.09 1.9E-06 50.3 4.6 35 215-249 13-47 (202)
488 PRK13946 shikimate kinase; Pro 93.7 0.051 1.1E-06 53.4 3.1 25 216-240 11-35 (184)
489 PF13306 LRR_5: Leucine rich r 93.7 0.29 6.2E-06 44.7 8.1 105 733-850 8-112 (129)
490 KOG0735 AAA+-type ATPase [Post 93.7 1.8 3.8E-05 49.8 15.1 150 193-364 668-848 (952)
491 cd02023 UMPK Uridine monophosp 93.7 0.043 9.2E-07 54.8 2.6 23 217-239 1-23 (198)
492 PRK15115 response regulator Gl 93.7 0.95 2.1E-05 51.7 14.0 46 193-238 135-180 (444)
493 PRK08506 replicative DNA helic 93.7 0.5 1.1E-05 53.9 11.4 73 194-273 172-244 (472)
494 COG0465 HflB ATP-dependent Zn 93.7 0.74 1.6E-05 52.7 12.6 174 191-390 149-356 (596)
495 PRK15453 phosphoribulokinase; 93.6 0.098 2.1E-06 53.8 5.0 28 214-241 4-31 (290)
496 PRK12339 2-phosphoglycerate ki 93.6 0.06 1.3E-06 53.2 3.5 25 215-239 3-27 (197)
497 TIGR01287 nifH nitrogenase iro 93.6 0.077 1.7E-06 56.1 4.5 27 216-242 1-27 (275)
498 cd03283 ABC_MutS-like MutS-lik 93.6 0.41 8.8E-06 47.6 9.3 23 216-238 26-48 (199)
499 PF00560 LRR_1: Leucine Rich R 93.6 0.026 5.7E-07 33.2 0.5 19 716-734 2-20 (22)
500 PRK05342 clpX ATP-dependent pr 93.5 0.092 2E-06 58.2 5.1 51 193-243 72-136 (412)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-121 Score=1139.29 Aligned_cols=863 Identities=40% Similarity=0.665 Sum_probs=760.4
Q ss_pred CCCcccEEEcCcccccCCcchHHHHHHHHhCCCcEEecCCCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHHHHH
Q 002299 18 RKNKYDVFLSFRGEDTRGNFTSHLFSALSKKHIETFIDDQLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLDELL 97 (940)
Q Consensus 18 ~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~f~d~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El~ 97 (940)
+.|+||||+||||+|+|++|++||+++|.++||.+|+|+++++|+.|.+++.+||++|+++|||||++||+|+||++||+
T Consensus 9 ~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~ 88 (1153)
T PLN03210 9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88 (1153)
T ss_pred CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCEEEEEEcccCCcchhhcccchhHHHHHHhhcch-hHHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHH
Q 002299 98 KIIDCKNNSGQMVIPVFYRVDPSHVRKQIGSFGDSISNLEERFP-EKMQRWRNALTEAANLSGFDSHVTRPESKLIEEIV 176 (940)
Q Consensus 98 ~~~~~~~~~~~~v~pvf~~v~p~~v~~~~~~~~~~~~~~~~~~~-~~~~~w~~~l~~~~~~~g~~~~~~~~~~~~~~~i~ 176 (940)
+|++|+++.++.|+||||+|||++||+|+|.|+++|++++.+.. +++++||+||+++|++.|+++..+++|++++++|+
T Consensus 89 ~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv 168 (1153)
T PLN03210 89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168 (1153)
T ss_pred HHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999887644 89999999999999999999886789999999999
Q ss_pred HhhhhccCcccCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecc--hh
Q 002299 177 GEVLKRLDDTFQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNV--RE 254 (940)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~ 254 (940)
.+|++++..+++.+.+++|||+.+++++..++..+.+++++|+|+||||+||||||+++|+++..+|++.+|+... ..
T Consensus 169 ~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 169 NDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred HHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 9999999988888889999999999999999987778899999999999999999999999999999999888531 11
Q ss_pred h---hc------cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHHHHHHHcccCCCCCCc
Q 002299 255 A---QE------TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQIEFLIGRLDWFASGS 325 (940)
Q Consensus 255 ~---~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs 325 (940)
. .. ......++++++..+........ .....++++++++|+||||||||+..+|+.+.....++++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI---YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGS 325 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCccc---CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCc
Confidence 0 00 01123455566666554432111 112567888999999999999999999999988888889999
Q ss_pred EEEEEeCChhhhhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcCCCHH
Q 002299 326 RIIITTRDKQVLSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSGRRKE 405 (940)
Q Consensus 326 ~iiiTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~ 405 (940)
+||||||++.++..++..++|+|+.|+.++|++||+++||++..+++.+.+++++|+++|+|+||||+++|++|++++..
T Consensus 326 rIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~ 405 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKE 405 (1153)
T ss_pred EEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHH
Confidence 99999999999987778889999999999999999999999877777889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHhhhcCCCh-hhHHHHHhhhcccCCCCHHHHHHHHHHCCCCchhchHHHHhccceEEeC
Q 002299 406 EWKSAMRKLEIVPHMEIQEVLKISYDGLDG-HEQDIFLDIACFLVGEDRDQVIRFLDSCGFFPEIGLRVLVDKSLITIDY 484 (940)
Q Consensus 406 ~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~-~~k~~~l~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 484 (940)
+|+.++++++...+..|..+|++||+.|++ .+|.||+++|||+.+.+.+.+..++..+++.++.+++.|+++||++...
T Consensus 406 ~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~ 485 (1153)
T PLN03210 406 DWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE 485 (1153)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC
Confidence 999999999988888899999999999976 5899999999999999999998888888888889999999999999998
Q ss_pred CeeeehHHHHHHHHHHHhhcCCCCCCCcccccccchHHHHhhcCcCccceeeeeccccCCcceEEeChhhhccCCCcceE
Q 002299 485 NTIKMHDLLRDMGREIVRKESINHPGERSRLWHHKDIYEVLTRNTGTKAIKAISLDMSNVSKEIHINPYTFSMMPELRFL 564 (940)
Q Consensus 485 ~~~~mH~lv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~i~~i~l~~~~~~~~~~~~~~~f~~~~~Lr~L 564 (940)
+++.|||++|+||++++++++ ..+++++++|.+.|+++++.+++|+..+++|++|++... ...+...+|.+|++|+.|
T Consensus 486 ~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~-~~~i~~~aF~~m~~L~~L 563 (1153)
T PLN03210 486 DIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID-ELHIHENAFKGMRNLLFL 563 (1153)
T ss_pred CeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc-eeeecHHHHhcCccccEE
Confidence 999999999999999999987 679999999999999999999999999999999999886 788999999999999999
Q ss_pred EEecCCCc----ccccCCCCCC---CCcceEEeCCCCCchh--hhhhhccccccccc----cccccccccCCCceeeCCC
Q 002299 565 KFYGQNKC----MITHFEGAPF---TDVRYFEWHKSPLKSL--NIRAENLVSLILPG----RLWDDVQNLVNLKEIDLSD 631 (940)
Q Consensus 565 ~l~~~~~~----~i~~l~~~~~---~~L~~L~l~~~~l~~l--~l~~~~L~~l~l~~----~l~~~~~~l~~L~~L~L~~ 631 (940)
.++++... ....+|.++. .+|++|+|.+++++.+ .+.+.+|+.+++.+ .+|.++..+++|++|+|++
T Consensus 564 ~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 564 KFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred EEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 99765211 1124555543 6899999999999999 67778999998887 6788899999999999999
Q ss_pred CCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCC
Q 002299 632 SKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKI 711 (940)
Q Consensus 632 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~ 711 (940)
|..+..+|+++.+++|++|+|++|..+..+|..++++++|+.|++++|..++.+|..+++++|+.|++++|..+..+|..
T Consensus 644 ~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 644 SKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred CCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc
Confidence 98889999999999999999999999999999999999999999999999999999889999999999999999888876
Q ss_pred CcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcc-------cccccCCCCCCcEEEecCCCCCCcCCCCCcch
Q 002299 712 SSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEY-------IASSIFTLKSLESIRISKCSNLRKFPEIPSCI 784 (940)
Q Consensus 712 ~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~-------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 784 (940)
.. +|++|++++|.++.+|..+ .+++|+.|.+.++..... .+.....+++|+.|++++|+.+.. +|..+
T Consensus 724 ~~-nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~---lP~si 798 (1153)
T PLN03210 724 ST-NISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE---LPSSI 798 (1153)
T ss_pred cC-CcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc---cChhh
Confidence 43 6999999999999999876 588999998887543211 111223357899999999877644 45556
Q ss_pred hccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhh
Q 002299 785 IDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLL 864 (940)
Q Consensus 785 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~ 864 (940)
..+ ++|+.|++++|..++.+|..+ .+++|+.|++++|.....+|.. .++|+.|+|++|.++.+|.+
T Consensus 799 ~~L-----~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~s----- 864 (1153)
T PLN03210 799 QNL-----HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWW----- 864 (1153)
T ss_pred hCC-----CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHH-----
Confidence 555 899999999998888888765 7899999999999888777753 46899999999998877754
Q ss_pred hccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCc
Q 002299 865 ESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKC 910 (940)
Q Consensus 865 ~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 910 (940)
+..+++|+.|+|++|+.+..+|..+..+++|+.+++++|.
T Consensus 865 ------i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 865 ------IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ------HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 4468889999999998888888888888999999988863
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-59 Score=545.37 Aligned_cols=452 Identities=25% Similarity=0.333 Sum_probs=329.4
Q ss_pred cchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH---hhccccceEEEecchhhhccCCHHHHHHHHHHH
Q 002299 195 VGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK---MSKHFEGSYFAHNVREAQETGGLAHLRQQLLST 271 (940)
Q Consensus 195 vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 271 (940)
||.+..++++.+.|..++. ++++|+||||+||||||+.++++ ++.+|+.++|+.+ +..+....++.+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V----Sk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV----SKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE----cccccHHhHHHHHHHH
Confidence 9999999999999876543 89999999999999999999983 6789999999987 4567888899999988
Q ss_pred hhCCCC--CCCchhhhHHHHHhhhcCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhhhh-CCCCcEEEc
Q 002299 272 LLDDRN--VKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVLSN-CRVDQIYDV 348 (940)
Q Consensus 272 ~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~-~~~~~~~~l 348 (940)
+..... .....++....+.+.|+++|+|||+||||+..+|+.+..+++....||+|++|||++.|+.. +++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 766443 22234678889999999999999999999999999999999988889999999999999988 788889999
Q ss_pred CCCCHHHHHHHHHHhhcCCC-CCCchhhHHHHHHHHHhcCChhhHHHHhhhhcCC-CHHHHHHHHHHHhcC-----C--C
Q 002299 349 KELVDVDALKLFSRCAFGED-DPTASYTKLTHEAVKYAKGVPLALKVLGSFLSGR-RKEEWKSAMRKLEIV-----P--H 419 (940)
Q Consensus 349 ~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-~~~~w~~~l~~l~~~-----~--~ 419 (940)
+.|+.+|||.||.+.+|... ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+...+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998763 3345589999999999999999999999999987 678999999987654 1 3
Q ss_pred chHHHHHHhhhcCCChhhHHHHHhhhcccCCC--CHHHHHHHHHHCCCC------------chhchHHHHhccceEEeC-
Q 002299 420 MEIQEVLKISYDGLDGHEQDIFLDIACFLVGE--DRDQVIRFLDSCGFF------------PEIGLRVLVDKSLITIDY- 484 (940)
Q Consensus 420 ~~i~~~l~~s~~~L~~~~k~~~l~la~f~~~~--~~~~l~~~~~~~~~~------------~~~~l~~L~~~sll~~~~- 484 (940)
+.+..+++.||+.||++.|.||+|||.||+++ +.+.++..|+++|++ .+.++.+|++++|+....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 45889999999999999999999999999998 789999999999975 335689999999998874
Q ss_pred ----CeeeehHHHHHHHHHHHhhcCCCCCCCcccccccc-hHHHHhhcCcCccceeeeeccccCCcceEEeChhhhccCC
Q 002299 485 ----NTIKMHDLLRDMGREIVRKESINHPGERSRLWHHK-DIYEVLTRNTGTKAIKAISLDMSNVSKEIHINPYTFSMMP 559 (940)
Q Consensus 485 ----~~~~mH~lv~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~~~~~~i~~i~l~~~~~~~~~~~~~~~f~~~~ 559 (940)
.++.|||+||++|.+++.+.+..... ...... ...+ ..+......++.+++...... .+ +. -...+
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~---~~-~~-~~~~~ 545 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEEN---QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIE---HI-AG-SSENP 545 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccc---eEEECCcCccc-cccccchhheeEEEEeccchh---hc-cC-CCCCC
Confidence 78999999999999999854322111 000000 0000 111222233444444332221 00 11 12233
Q ss_pred CcceEEEecCCCcccccCCCCCC---CCcceEEeCCCC-CchhhhhhhccccccccccccccccccCCCceeeCCCCCCC
Q 002299 560 ELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSP-LKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQL 635 (940)
Q Consensus 560 ~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~-l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~ 635 (940)
+|++|-+.+|.. .+...+.+++ +.|++||+++|. +. .+|..+++|-+||+|+|+++.+.
T Consensus 546 ~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~----------------~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 546 KLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLS----------------KLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred ccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccC----------------cCChHHhhhhhhhcccccCCCcc
Confidence 566666666521 1233333322 555555555421 11 23555566666666666665433
Q ss_pred CcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecC
Q 002299 636 TKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVS 678 (940)
Q Consensus 636 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 678 (940)
..++.+.++..|.+|++..+......|.....|++|++|.+..
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 2222455566666666655544444444444455666655543
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=306.84 Aligned_cols=154 Identities=31% Similarity=0.514 Sum_probs=140.5
Q ss_pred CCCcccEEEcCcccccCCcchHHHHHHHHhCCCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHHHH
Q 002299 18 RKNKYDVFLSFRGEDTRGNFTSHLFSALSKKHIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLDEL 96 (940)
Q Consensus 18 ~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El 96 (940)
...+|||||||+|+|++++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++|++|.||++||
T Consensus 23 ~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL 102 (187)
T PLN03194 23 SAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHEL 102 (187)
T ss_pred CCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHH
Confidence 467899999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCEEEEEEcccCCcchhhc-ccchhHHHHHHhhcchhHHHHHHHHHHHHhhccCCCCCC-CCchhHHHHH
Q 002299 97 LKIIDCKNNSGQMVIPVFYRVDPSHVRKQ-IGSFGDSISNLEERFPEKMQRWRNALTEAANLSGFDSHV-TRPESKLIEE 174 (940)
Q Consensus 97 ~~~~~~~~~~~~~v~pvf~~v~p~~v~~~-~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~g~~~~~-~~~~~~~~~~ 174 (940)
++|++|+ ..|+||||+|+|++||+| .|.. ..+++++||.||++++++.|+.+.. .++|++++++
T Consensus 103 ~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~ 168 (187)
T PLN03194 103 ALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTM 168 (187)
T ss_pred HHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHH
Confidence 9999874 479999999999999997 4431 2379999999999999999997653 5789999999
Q ss_pred HHHhhhhccCc
Q 002299 175 IVGEVLKRLDD 185 (940)
Q Consensus 175 i~~~~~~~l~~ 185 (940)
|+..|.+++..
T Consensus 169 iv~~v~k~l~~ 179 (187)
T PLN03194 169 ASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-37 Score=333.51 Aligned_cols=268 Identities=29% Similarity=0.448 Sum_probs=214.1
Q ss_pred hhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH--hhccccceEEEecchhhhccCCHHHHHHHHHHHhhC
Q 002299 197 VECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK--MSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLD 274 (940)
Q Consensus 197 r~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 274 (940)
|+.++++|.+.|....++.++|+|+||||+||||||++++++ ++++|+.++|+.... ......+..+++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----NPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-----SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----ccccccccccccccccc
Confidence 789999999999886678999999999999999999999987 889999999998643 33447777888887766
Q ss_pred CCC---CCCchhhhHHHHHhhhcCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhhhhCCC-CcEEEcCC
Q 002299 275 DRN---VKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVLSNCRV-DQIYDVKE 350 (940)
Q Consensus 275 ~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~-~~~~~l~~ 350 (940)
... ...+.+.....+++.+.++++||||||||+...|+.+...++....|++||||||+..++..+.. ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 632 34566778899999999999999999999999998888777767789999999999988766543 67899999
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCchhhHHHHHHHHHhcCChhhHHHHhhhhcCC-CHHHHHHHHHHHhcCC------CchH
Q 002299 351 LVDVDALKLFSRCAFGED-DPTASYTKLTHEAVKYAKGVPLALKVLGSFLSGR-RKEEWKSAMRKLEIVP------HMEI 422 (940)
Q Consensus 351 L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-~~~~w~~~l~~l~~~~------~~~i 422 (940)
|+.+||++||.+.++... ...+..++.+++|+++|+|+||||+++|++++.+ +..+|+.+++++.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997655 3345557789999999999999999999999644 6688999888765432 3569
Q ss_pred HHHHHhhhcCCChhhHHHHHhhhcccCCC--CHHHHHHHHHHCCCCch
Q 002299 423 QEVLKISYDGLDGHEQDIFLDIACFLVGE--DRDQVIRFLDSCGFFPE 468 (940)
Q Consensus 423 ~~~l~~s~~~L~~~~k~~~l~la~f~~~~--~~~~l~~~~~~~~~~~~ 468 (940)
..++..||+.|+++.|+||++||+||.+. +.+.++.+|.++|++..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999986 69999999999987654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.5e-30 Score=326.45 Aligned_cols=364 Identities=20% Similarity=0.228 Sum_probs=263.6
Q ss_pred eeccccCCcceEEeChhhhccCCCcceEEEecCCCcccccCCCCCC---CCcceEEeCCCCCchh-------hhhhhccc
Q 002299 537 ISLDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSPLKSL-------NIRAENLV 606 (940)
Q Consensus 537 i~l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~l~~l-------~l~~~~L~ 606 (940)
..+|++.+. .....+..|..+++|+.|++++|... ..+|...+ .+|++|++++|.+... .+...+|.
T Consensus 72 ~~L~L~~~~-i~~~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 72 VSIDLSGKN-ISGKISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148 (968)
T ss_pred EEEEecCCC-ccccCChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence 344444432 22334678999999999999988432 24565443 8999999999987532 22233333
Q ss_pred cccccccccccccccCCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCccc
Q 002299 607 SLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSL 685 (940)
Q Consensus 607 ~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l 685 (940)
.+.+.+.+|..++++++|++|+|++|.+...+|. ++++++|++|++++|.....+|..++++++|+.|++++|.....+
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 4444446788888899999999999887777775 888999999999998888888888888999999999988777777
Q ss_pred CCcc-CCCCCCEEEecCCCCCCcCCCCCcC--CccEEecCCCCCc-ccCccccccCCCcEEEecCCCCCcccccccCCCC
Q 002299 686 PHTI-RSESLFELRLSGCTSLKRFPKISSC--FLKDLDLESCGIE-ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLK 761 (940)
Q Consensus 686 ~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~--~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 761 (940)
|..+ .+++|++|++++|.....+|..... +|++|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+.+++
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 7665 5888899999888766556544332 6888888888876 5677788888888888888888777887788888
Q ss_pred CCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCC
Q 002299 762 SLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLK 841 (940)
Q Consensus 762 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 841 (940)
+|+.|++++|...... |..+..+ ++|+.|++++|.+...+|..+..+++|+.|++++|.+.+.+|..+..++
T Consensus 309 ~L~~L~l~~n~~~~~~---~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 309 NLEILHLFSNNFTGKI---PVALTSL-----PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred CCcEEECCCCccCCcC---ChhHhcC-----CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 8888888887665433 3334333 7777777777777667777777777777777777777666676666667
Q ss_pred CCCEEEccCCCCc-cCchhHHHh-------------hhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhcc
Q 002299 842 ALEELTVEGTAMR-EVPESLGQL-------------LESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAE 907 (940)
Q Consensus 842 ~L~~L~L~~n~l~-~lp~~l~~l-------------~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~ 907 (940)
+|+.|++++|++. .+|..+..+ .+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 7777777777665 344333221 23456667778888888888888777777777778888888888
Q ss_pred CCcc
Q 002299 908 GKCS 911 (940)
Q Consensus 908 ~n~~ 911 (940)
+|..
T Consensus 461 ~n~~ 464 (968)
T PLN00113 461 RNKF 464 (968)
T ss_pred Ccee
Confidence 8754
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=4.6e-29 Score=312.99 Aligned_cols=353 Identities=20% Similarity=0.243 Sum_probs=263.7
Q ss_pred EeChhhhccCCCcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchh---hhh-hhcccccccc-----cccccccc
Q 002299 549 HINPYTFSMMPELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSL---NIR-AENLVSLILP-----GRLWDDVQ 619 (940)
Q Consensus 549 ~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l---~l~-~~~L~~l~l~-----~~l~~~~~ 619 (940)
.++...|..+++||+|++++|... ...|.+...+|++|++++|.+... .+. ..+|+.+++. +.+|..+.
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFT--GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccc--cccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 566777889999999999988533 245555568899999999887532 121 2345555554 36788888
Q ss_pred ccCCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEE
Q 002299 620 NLVNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFEL 697 (940)
Q Consensus 620 ~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L 697 (940)
++++|++|+|++|.+...+|. +..+++|++|+|++|.....+|..++++++|++|++++|.....+|..+ .+++|++|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 999999999999988777774 8889999999999988888888889999999999999987777777665 58889999
Q ss_pred EecCCCCCCcCCCCCc--CCccEEecCCCCCc-ccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCC
Q 002299 698 RLSGCTSLKRFPKISS--CFLKDLDLESCGIE-ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNL 774 (940)
Q Consensus 698 ~l~~~~~l~~~~~~~~--~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 774 (940)
++++|.....+|.... .+|++|++++|.+. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|...
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 9988876655554332 26888888888887 67777888888888888888888888888888888888888887765
Q ss_pred CcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc
Q 002299 775 RKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
.. .|..+..+ ++|+.|++++|.+....|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|+++
T Consensus 346 ~~---~p~~l~~~-----~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 346 GE---IPKNLGKH-----NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred Cc---CChHHhCC-----CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 33 33444444 67777777777666666666666666777777766666666666666666666666666665
Q ss_pred -cCchhHHHh-------------hhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccC
Q 002299 855 -EVPESLGQL-------------LESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSD 912 (940)
Q Consensus 855 -~lp~~l~~l-------------~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 912 (940)
.+|..+..+ .+.+|..+..+++|+.|+|++|++.+.+|..+ ..++|+.|++++|.+.
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS 488 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccC
Confidence 344433322 23455667789999999999999998888765 4689999999999763
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=3.5e-28 Score=255.50 Aligned_cols=350 Identities=18% Similarity=0.148 Sum_probs=254.5
Q ss_pred eeeccccCCcceEEeChhhhccCCCcceEEEecCCCcccccCCCCCC--CCcceEEeCCCCCchh---------hhhhhc
Q 002299 536 AISLDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAPF--TDVRYFEWHKSPLKSL---------NIRAEN 604 (940)
Q Consensus 536 ~i~l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~--~~L~~L~l~~~~l~~l---------~l~~~~ 604 (940)
.-.+|++++. ...+....|.++++|+.+++.+| .+..+|.... .+|+.|+|.+|.|.++ .+...+
T Consensus 80 t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N---~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 80 TQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN---ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeeeeccccc-cccCcHHHHhcCCcceeeeeccc---hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 3457777775 67788889999999999999988 5566776554 7799999999999877 122223
Q ss_pred cccccccccccccccccCCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCc
Q 002299 605 LVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLR 683 (940)
Q Consensus 605 L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 683 (940)
|..+.++..--..+..-.++++|+|++|.+...-.+ |..+.+|-+|.|+.|.+...-+..|++|++|+.|+|..|.+-.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 333333321112344456788888888876554433 7778888888888876665555677778888888888775432
Q ss_pred ccCCc-cCCCCCCEEEecCCCCCCcCC--CCCcCCccEEecCCCCCcccCc-cccccCCCcEEEecCCCCCcccccccCC
Q 002299 684 SLPHT-IRSESLFELRLSGCTSLKRFP--KISSCFLKDLDLESCGIEELPS-SIECLYNLRSIDLLNCTRLEYIASSIFT 759 (940)
Q Consensus 684 ~l~~~-~~l~~L~~L~l~~~~~l~~~~--~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 759 (940)
.-... -++++|+.|.|..|..-+--. .....++++|+|+.|.++.+.. |+.+|+.|+.|++++|.+...-+.....
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 21222 267888888887765322111 1112268889999998887764 4778899999999998887777777777
Q ss_pred CCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCC---Ccc
Q 002299 760 LKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGL---PDE 836 (940)
Q Consensus 760 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~ 836 (940)
+++|+.|+|++|.... ++ +.++..+ ..|+.|+|++|.+...-...|..+.+|++|+|++|.+...+ ...
T Consensus 316 tqkL~~LdLs~N~i~~-l~--~~sf~~L-----~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITR-LD--EGSFRVL-----SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred cccceeEecccccccc-CC--hhHHHHH-----HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 8899999999876543 22 2334444 78899999998776655667888899999999999876533 334
Q ss_pred CCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccC
Q 002299 837 LGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEG 908 (940)
Q Consensus 837 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~ 908 (940)
|.++++|+.|.+.||+++.+|. ..|.++++|+.|+|.+|.+...-|.+|..+ .|++|.+..
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~k----------rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPK----------RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hccchhhhheeecCceeeecch----------hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 7789999999999999888874 457789999999999999988888999998 899998876
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=6e-29 Score=262.46 Aligned_cols=322 Identities=24% Similarity=0.328 Sum_probs=202.6
Q ss_pred CCcceEEEecCCCcccccCCCCCC--CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCC
Q 002299 559 PELRFLKFYGQNKCMITHFEGAPF--TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLT 636 (940)
Q Consensus 559 ~~Lr~L~l~~~~~~~i~~l~~~~~--~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~ 636 (940)
+-.|-.++++|.... ..+|.... +.+++|.+..+.+..+ |..++.|.+|++|.+++|++.+
T Consensus 7 pFVrGvDfsgNDFsg-~~FP~~v~qMt~~~WLkLnrt~L~~v----------------PeEL~~lqkLEHLs~~HN~L~~ 69 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSG-DRFPHDVEQMTQMTWLKLNRTKLEQV----------------PEELSRLQKLEHLSMAHNQLIS 69 (1255)
T ss_pred ceeecccccCCcCCC-CcCchhHHHhhheeEEEechhhhhhC----------------hHHHHHHhhhhhhhhhhhhhHh
Confidence 344555555554333 33444333 5566666665555543 5555555555555555555444
Q ss_pred cCCCcccCCCccEEeccCCCCC-ccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCCcC
Q 002299 637 KLPDLSLARNLESLDLWGCSSL-METHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKISSC 714 (940)
Q Consensus 637 ~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~ 714 (940)
....++.++.|+.+.+..|+.. .-+|..+..|..|..|||++| .++..|..+ .-+++-.|+|++|+ ++.+|.....
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfi 147 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFI 147 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHH
Confidence 4444555555555555554332 234555555555555555555 233444433 34455555555543 3333332221
Q ss_pred ---CccEEecCCCCCcccCccccccCCCcEEEecCCCC-------------------------CcccccccCCCCCCcEE
Q 002299 715 ---FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTR-------------------------LEYIASSIFTLKSLESI 766 (940)
Q Consensus 715 ---~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~-------------------------~~~~~~~l~~l~~L~~L 766 (940)
.|-.|+|++|.+..+|+.+..|.+|+.|.|++|++ +..+|.++..+.+|..+
T Consensus 148 nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 23445555555555555555555555555555543 23456667777777777
Q ss_pred EecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEE
Q 002299 767 RISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEEL 846 (940)
Q Consensus 767 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 846 (940)
++|.|+. |.+|.++..+ ++|+.|+||+|++.. +........+|++|++|.|+++ .+|+.+..++.|+.|
T Consensus 228 DlS~N~L----p~vPecly~l-----~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 228 DLSENNL----PIVPECLYKL-----RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL 296 (1255)
T ss_pred cccccCC----CcchHHHhhh-----hhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence 7776532 6677777666 788888888886543 3344556677888888888876 488888888888888
Q ss_pred EccCCCCc--cCchhHHHh------------hhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 847 TVEGTAMR--EVPESLGQL------------LESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 847 ~L~~n~l~--~lp~~l~~l------------~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
.+.+|++. .||+.|+.+ ++-+|++++.|+.|+.|.|+.|++.+ +|+++.-|+.|+.|++..|+.
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcC
Confidence 88888766 788888765 67789999999999999999988766 799999999999999999864
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=9.1e-27 Score=244.93 Aligned_cols=362 Identities=15% Similarity=0.139 Sum_probs=266.5
Q ss_pred CcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchh--------hhhhhccccccccccccccccccCCCceeeCCC
Q 002299 560 ELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSL--------NIRAENLVSLILPGRLWDDVQNLVNLKEIDLSD 631 (940)
Q Consensus 560 ~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l--------~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~ 631 (940)
.-++|++++|....+.........+|+.+.+.+|.+..+ .+....|.++.++..-.+.++.++.|+.||||.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 456699999954332221112228899999999988877 233334444545444455678889999999999
Q ss_pred CCCCCcCC--CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccC-CCCCCEEEecCCCCCC--
Q 002299 632 SKQLTKLP--DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIR-SESLFELRLSGCTSLK-- 706 (940)
Q Consensus 632 ~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~-l~~L~~L~l~~~~~l~-- 706 (940)
|.+ ..+| .|..-.++++|+|++|.+...-...|..+.+|..|.|+.|.+...-+..++ ++.|+.|+|..|..-.
T Consensus 159 N~i-s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLI-SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chh-hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 954 4444 488888999999999988777777888999999999999866544344454 8999999998875321
Q ss_pred cCCCCCcCCccEEecCCCCCcccCcc-ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchh
Q 002299 707 RFPKISSCFLKDLDLESCGIEELPSS-IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCII 785 (940)
Q Consensus 707 ~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 785 (940)
.+..-...+|+.|.|..|+|..+... |..+.++++|+|..|++...--.++.++++|+.|++|+|.....-++..+.
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf-- 315 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF-- 315 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh--
Confidence 11111222689999999999988765 788999999999999888777778889999999999997654333322221
Q ss_pred ccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhh
Q 002299 786 DEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLE 865 (940)
Q Consensus 786 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 865 (940)
. ++|+.|+|++|.+...-+..+..+..|++|+|++|.+...--..|..+.+|++|||++|.+.-. ++
T Consensus 316 -t-----qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~-------IE 382 (873)
T KOG4194|consen 316 -T-----QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC-------IE 382 (873)
T ss_pred -c-----ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE-------Ee
Confidence 1 8899999999988888888888999999999999998765556688899999999999987622 22
Q ss_pred ccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccC----------------CCccchhcccchhhhhh
Q 002299 866 SLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSD----------------RSTLVYYISRDAELMRN 929 (940)
Q Consensus 866 ~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~----------------~~~l~~~~~~~~~~~~~ 929 (940)
.-...|.+|++|+.|.|.+|++-..-..+|..++.|++|+|.+|.+. .......+-++..++..
T Consensus 383 Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHH
Confidence 22345788999999999999876654559999999999999999641 11222234445678888
Q ss_pred HHhhhccC
Q 002299 930 WVHHSLFD 937 (940)
Q Consensus 930 ~~~~~~~~ 937 (940)
|+..-.++
T Consensus 463 Wl~~~~lq 470 (873)
T KOG4194|consen 463 WLYRRKLQ 470 (873)
T ss_pred HHHhcccc
Confidence 88765554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.6e-26 Score=244.28 Aligned_cols=324 Identities=24% Similarity=0.324 Sum_probs=252.9
Q ss_pred hhhhccCCCcceEEEecCCCcccccCCCCCC--CCcceEEeCCCCCchh--------hhhhhccccccccc-cccccccc
Q 002299 552 PYTFSMMPELRFLKFYGQNKCMITHFEGAPF--TDVRYFEWHKSPLKSL--------NIRAENLVSLILPG-RLWDDVQN 620 (940)
Q Consensus 552 ~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~--~~L~~L~l~~~~l~~l--------~l~~~~L~~l~l~~-~l~~~~~~ 620 (940)
|.....|++++.|.|... ++..+|.... .+|.+|.+.+|.+.++ .++...+..+.+.. -+|..+..
T Consensus 25 P~~v~qMt~~~WLkLnrt---~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRT---KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred chhHHHhhheeEEEechh---hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence 445567888888888654 4455666554 7788888888877666 33333444455544 57888999
Q ss_pred cCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCcccccc-ccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEE
Q 002299 621 LVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSS-IQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELR 698 (940)
Q Consensus 621 l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~ 698 (940)
+..|..||||+|++.+.+..+...+++-.|+|++| .+..+|.. +.+|..|-+|||++| .+..+|..+ .+..|++|.
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhh
Confidence 99999999999975554446999999999999998 55666654 569999999999998 556777666 689999999
Q ss_pred ecCCCC----CCcCCCCCcCCccEEecCCCCCc--ccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCC
Q 002299 699 LSGCTS----LKRFPKISSCFLKDLDLESCGIE--ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCS 772 (940)
Q Consensus 699 l~~~~~----l~~~~~~~~~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 772 (940)
|++|+. +..+|... +|+.|++++++-+ .+|.++..+.||..++++.|+ +..+|..+.++++|+.|+||+|.
T Consensus 180 Ls~NPL~hfQLrQLPsmt--sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMT--SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred cCCChhhHHHHhcCccch--hhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc
Confidence 999973 34555443 3888999988655 889999999999999999854 56778888999999999999976
Q ss_pred CCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCC-CCCccCCCCCCCCEEEccCC
Q 002299 773 NLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLD-GLPDELGNLKALEELTVEGT 851 (940)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n 851 (940)
.. ++..+...+ .+|++|++|.|+ +..+|..++.++.|+.|.+.+|.+.- .+|.+++.+.+|+.+..++|
T Consensus 257 it----eL~~~~~~W-----~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 257 IT----ELNMTEGEW-----ENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred ee----eeeccHHHH-----hhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 54 333344455 789999999985 56788889999999999988888754 58888999999999999999
Q ss_pred CCccCchhHHHh------------hhccCccccCCCCCCEEeccCCCCCcccCC
Q 002299 852 AMREVPESLGQL------------LESLPSSLYKSKCLQDSYLDDCPNLHRLPD 893 (940)
Q Consensus 852 ~l~~lp~~l~~l------------~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~ 893 (940)
.+.-+|+++... +-++|+.+.-++-|+.|++..|+.+-..|.
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 998888877633 678899999999999999999998875444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.1e-26 Score=233.98 Aligned_cols=352 Identities=22% Similarity=0.249 Sum_probs=255.1
Q ss_pred hhhhccCCCcceEEEecCCCcccccCCCCCC--CCcceEEeCCCCCchh---hhhhhccccccccc----cccccccccC
Q 002299 552 PYTFSMMPELRFLKFYGQNKCMITHFEGAPF--TDVRYFEWHKSPLKSL---NIRAENLVSLILPG----RLWDDVQNLV 622 (940)
Q Consensus 552 ~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~--~~L~~L~l~~~~l~~l---~l~~~~L~~l~l~~----~l~~~~~~l~ 622 (940)
|.+...+..++.|+.+.| ++..+|.... ..|+.++.+.|.++.+ .....++..++..+ .+|.++.++.
T Consensus 84 p~aig~l~~l~~l~vs~n---~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHN---KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred CHHHHHHHHHHHhhcccc---hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 345566666777777766 4456666555 6677777777777766 12222333333222 5677788888
Q ss_pred CCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCC
Q 002299 623 NLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGC 702 (940)
Q Consensus 623 ~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~ 702 (940)
+|..|++.+|++...+|+.-.++.|++||...| .++.+|+.++.+.+|..|++..| .+..+|..-++..|++|+++.|
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhccc
Confidence 888888888877666666555888888888876 77888888999999999999888 4567787668888888888776
Q ss_pred CCCCcCCCCCcC---CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcC--
Q 002299 703 TSLKRFPKISSC---FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKF-- 777 (940)
Q Consensus 703 ~~l~~~~~~~~~---~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-- 777 (940)
. ++.+|.-... ++..|++..|+++++|..+..+.+|++||+++|.+. .+|..++++ +|+.|.+.+|+.-+.-
T Consensus 239 ~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 239 Q-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred H-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHH
Confidence 4 4455543332 588999999999999999999999999999997654 567789999 9999999887632100
Q ss_pred --------------------------------CCCCcc----hhcc---------------------ccccCCCceEEEc
Q 002299 778 --------------------------------PEIPSC----IIDE---------------------AGIKRQALSKLEL 800 (940)
Q Consensus 778 --------------------------------~~~~~~----~~~~---------------------~~~~~~~L~~L~L 800 (940)
+..+.+ .... ...+-.-....++
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 000000 0000 0000011344555
Q ss_pred CCCCCC-----------------------ccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc
Q 002299 801 NNCSRL-----------------------ESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 801 ~~~~~~-----------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
++|++. +..|..++.+++|..|++++|.+- .+|..++.+..|+.|+|++|.+..+|
T Consensus 396 skNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP 474 (565)
T KOG0472|consen 396 SKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLP 474 (565)
T ss_pred ccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccch
Confidence 555432 234556778999999999998765 58999999999999999999999999
Q ss_pred hhHHHh------------hhccCcc-ccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCC
Q 002299 858 ESLGQL------------LESLPSS-LYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 858 ~~l~~l------------~~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 913 (940)
..+..+ ++.++.. +.++.+|.+|+|.+|.+. .+|+.++++++|++|++.||++..
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence 876533 5667776 999999999999988764 579999999999999999998874
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.7e-20 Score=235.17 Aligned_cols=307 Identities=26% Similarity=0.358 Sum_probs=237.6
Q ss_pred hhhccC-CCcceEEEecCCCcccccCCCCCC-CCcceEEeCCCCCchh---hhhhhccccccccc-----cccccccccC
Q 002299 553 YTFSMM-PELRFLKFYGQNKCMITHFEGAPF-TDVRYFEWHKSPLKSL---NIRAENLVSLILPG-----RLWDDVQNLV 622 (940)
Q Consensus 553 ~~f~~~-~~Lr~L~l~~~~~~~i~~l~~~~~-~~L~~L~l~~~~l~~l---~l~~~~L~~l~l~~-----~l~~~~~~l~ 622 (940)
..|..+ ++||.|.+.++ .+..+|..+. .+|+.|++.++.++.+ .-...+|+.+++++ .+| .+..++
T Consensus 582 ~~~~~lp~~Lr~L~~~~~---~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~ 657 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKY---PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMAT 657 (1153)
T ss_pred cchhhcCcccEEEEecCC---CCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCC
Confidence 345555 46999999887 4466776665 8899999999988877 12235666666664 344 478899
Q ss_pred CCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecC
Q 002299 623 NLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSG 701 (940)
Q Consensus 623 ~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~ 701 (940)
+|++|+|++|..+..+|. +..+++|+.|++++|..+..+|..+ ++++|+.|++++|..+..+|.. ..+|+.|++++
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~ 734 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDE 734 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCC
Confidence 999999999988888885 8999999999999999999998776 7999999999999888877753 56899999998
Q ss_pred CCCCCcCCCCC-cCCccEEecCCCCCcccCc--------cccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCC
Q 002299 702 CTSLKRFPKIS-SCFLKDLDLESCGIEELPS--------SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCS 772 (940)
Q Consensus 702 ~~~l~~~~~~~-~~~L~~L~L~~~~i~~lp~--------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 772 (940)
|. +..+|... ..+|++|.+.++....++. ....+++|+.|++++|.....+|..++++++|+.|++++|.
T Consensus 735 n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 735 TA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred Cc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 86 45566533 2368888887754333221 12335789999999999888899999999999999999998
Q ss_pred CCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCC-
Q 002299 773 NLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGT- 851 (940)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n- 851 (940)
.++.+|... . +++|+.|++++|..+..+|.. .++|+.|+|++|.+. .+|..+..+++|+.|+|++|
T Consensus 814 ~L~~LP~~~----~-----L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 814 NLETLPTGI----N-----LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CcCeeCCCC----C-----ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 887665422 2 288999999999888777653 468999999999876 48888999999999999985
Q ss_pred CCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCccc
Q 002299 852 AMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRL 891 (940)
Q Consensus 852 ~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~ 891 (940)
++..+ |..+..+++|+.|++++|..+..+
T Consensus 881 ~L~~l-----------~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 881 NLQRV-----------SLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CcCcc-----------CcccccccCCCeeecCCCcccccc
Confidence 44444 445567888999999999876543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=3.9e-23 Score=229.79 Aligned_cols=351 Identities=23% Similarity=0.189 Sum_probs=247.6
Q ss_pred hhhhccCCCcceEEEecCCCcccccCCCCCC--CCcceEEeCCCCCchhhhh---hhccccccccc----cccccccccC
Q 002299 552 PYTFSMMPELRFLKFYGQNKCMITHFEGAPF--TDVRYFEWHKSPLKSLNIR---AENLVSLILPG----RLWDDVQNLV 622 (940)
Q Consensus 552 ~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~--~~L~~L~l~~~~l~~l~l~---~~~L~~l~l~~----~l~~~~~~l~ 622 (940)
-++..+.-+|+.|++++| .+..+|..+- .+|+.|+++.|.++++.++ ..+|+.+.+.+ .+|.++..+.
T Consensus 38 l~~~~~~v~L~~l~lsnn---~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNN---QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELK 114 (1081)
T ss_pred hHHhhheeeeEEeecccc---ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhh
Confidence 334444555888999888 4455665554 7888888888888887333 34555555555 6788899999
Q ss_pred CCceeeCCCCCCCCcCCCcccCCCccEEeccCC-------------------CCCccccccccCCCcccEEEecCCCCCc
Q 002299 623 NLKEIDLSDSKQLTKLPDLSLARNLESLDLWGC-------------------SSLMETHSSIQYLNKLAFLYLVSCESLR 683 (940)
Q Consensus 623 ~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~-------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 683 (940)
+|++|+++.|.+...++-+..+..+..+..++| .....++..+.++.. .|+|++|....
T Consensus 115 nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 115 NLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV 192 (1081)
T ss_pred cccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh
Confidence 999999999976655544555555555555554 333333334444444 47777765441
Q ss_pred ----ccCC--------------ccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEec
Q 002299 684 ----SLPH--------------TIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLL 745 (940)
Q Consensus 684 ----~l~~--------------~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 745 (940)
.++. ....++|+.|..+.|......+.....+|+++++++|+++.+|.|++.+.+|+.|+..
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 0000 0124667777777787776666666668999999999999999999999999999999
Q ss_pred CCCCC----------------------cccccccCCCCCCcEEEecCCCCCCcCCCCCcch-----h-------------
Q 002299 746 NCTRL----------------------EYIASSIFTLKSLESIRISKCSNLRKFPEIPSCI-----I------------- 785 (940)
Q Consensus 746 ~~~~~----------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~------------- 785 (940)
+|.+. ..+|....++++|++|+|..|+ +..+|...... .
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 87652 2456667778899999998864 33333321000 0
Q ss_pred ccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCC-ccCCCCCCCCEEEccCCCCccCchhHHHh-
Q 002299 786 DEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLP-DELGNLKALEELTVEGTAMREVPESLGQL- 863 (940)
Q Consensus 786 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~n~l~~lp~~l~~l- 863 (940)
......++.|+.|.+.+|.+.+..-..+.++++|+.|+|++|.+.. +| ..+.++..|++|+||||.++.+|.++..+
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~ 430 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNKLTTLPDTVANLG 430 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccchhhhhhHHHHhhh
Confidence 0011123678888999998887766678999999999999999875 55 45788999999999999999999876543
Q ss_pred -----------hhccCccccCCCCCCEEeccCCCCCcc-cCCCcCCchhhhhhhccCCcc
Q 002299 864 -----------LESLPSSLYKSKCLQDSYLDDCPNLHR-LPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 864 -----------~~~lp~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~ 911 (940)
+..+| .+..++.|+.+|++.|.+... +|..... ++|++||++||..
T Consensus 431 ~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 66778 688899999999999987643 3433333 8999999999964
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=2.8e-23 Score=209.64 Aligned_cols=326 Identities=22% Similarity=0.220 Sum_probs=238.9
Q ss_pred hhhccCCCcceEEEecCCCcccccCCCCCC--CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCC
Q 002299 553 YTFSMMPELRFLKFYGQNKCMITHFEGAPF--TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLS 630 (940)
Q Consensus 553 ~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~--~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~ 630 (940)
+....-..|..|.+++| .+..+..... ..|.+|+.++|.+..+ |.+++.+..++.|+.+
T Consensus 39 e~wW~qv~l~~lils~N---~l~~l~~dl~nL~~l~vl~~~~n~l~~l----------------p~aig~l~~l~~l~vs 99 (565)
T KOG0472|consen 39 ENWWEQVDLQKLILSHN---DLEVLREDLKNLACLTVLNVHDNKLSQL----------------PAAIGELEALKSLNVS 99 (565)
T ss_pred hhhhhhcchhhhhhccC---chhhccHhhhcccceeEEEeccchhhhC----------------CHHHHHHHHHHHhhcc
Confidence 34445566777888877 3344433333 6677777777776654 7788888888888888
Q ss_pred CCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCC
Q 002299 631 DSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPK 710 (940)
Q Consensus 631 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~ 710 (940)
+|++...++.+..+.+|.+|++++| ...++|++++.+..|..|+..+|.+.+..+..+.+.+|..|++.+|......|.
T Consensus 100 ~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~ 178 (565)
T KOG0472|consen 100 HNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN 178 (565)
T ss_pred cchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH
Confidence 8876665556888888888888887 456677788888888888888875544433334677788888888765444333
Q ss_pred CCcC-CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchh-ccc
Q 002299 711 ISSC-FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCII-DEA 788 (940)
Q Consensus 711 ~~~~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~ 788 (940)
.... .|++|+...|-++.+|+.++.+.+|..|++..|++. .+| .|.++..|++|+++.|.. + .+|.... .+
T Consensus 179 ~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~---~lpae~~~~L- 251 (565)
T KOG0472|consen 179 HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-E---MLPAEHLKHL- 251 (565)
T ss_pred HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-H---hhHHHHhccc-
Confidence 2222 588888888888888888888888888888886543 455 578888888888877543 2 2333332 33
Q ss_pred cccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHH-------
Q 002299 789 GIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLG------- 861 (940)
Q Consensus 789 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~------- 861 (940)
++|..||+.+|+ +++.|..++-+.+|.+|++++|.++. +|..++++ .|+.|-+.||++..+-..+-
T Consensus 252 ----~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 252 ----NSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEV 324 (565)
T ss_pred ----ccceeeeccccc-cccCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHH
Confidence 899999999995 56789999999999999999999875 78889999 89999999998865433221
Q ss_pred --Hh----------------------------------------------------------------------------
Q 002299 862 --QL---------------------------------------------------------------------------- 863 (940)
Q Consensus 862 --~l---------------------------------------------------------------------------- 863 (940)
++
T Consensus 325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elP 404 (565)
T KOG0472|consen 325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELP 404 (565)
T ss_pred HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhh
Confidence 00
Q ss_pred -------------------hhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCC
Q 002299 864 -------------------LESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 864 -------------------~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 913 (940)
++-+|..++.+++|..|+|++|. +..+|..++.+..|+.|+++.|.+.+
T Consensus 405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~ 472 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRM 472 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheeccccccccc
Confidence 33444557889999999999774 56689999999999999999995543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=4.2e-18 Score=197.19 Aligned_cols=263 Identities=20% Similarity=0.206 Sum_probs=176.3
Q ss_pred cceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCCC
Q 002299 561 LRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPD 640 (940)
Q Consensus 561 Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 640 (940)
-..|+++++ .+..+|..+..+|+.|.+.+|.++.+ |. .+++|++|+|++|++. .+|.
T Consensus 203 ~~~LdLs~~---~LtsLP~~l~~~L~~L~L~~N~Lt~L----------------P~---lp~~Lk~LdLs~N~Lt-sLP~ 259 (788)
T PRK15387 203 NAVLNVGES---GLTTLPDCLPAHITTLVIPDNNLTSL----------------PA---LPPELRTLEVSGNQLT-SLPV 259 (788)
T ss_pred CcEEEcCCC---CCCcCCcchhcCCCEEEccCCcCCCC----------------CC---CCCCCcEEEecCCccC-cccC
Confidence 445666665 44566666666777787777777755 22 2467888888888644 4453
Q ss_pred cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEe
Q 002299 641 LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLD 720 (940)
Q Consensus 641 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~ 720 (940)
+ .++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|. ..++|+.|++++|. +..+|.... +|+.|+
T Consensus 260 l--p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N~-L~~Lp~lp~-~L~~L~ 328 (788)
T PRK15387 260 L--PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQ-LASLPALPS-ELCKLW 328 (788)
T ss_pred c--ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-cccccc--cccccceeECCCCc-cccCCCCcc-cccccc
Confidence 2 4678888888874 3445442 3567778888874 345554 24678888888874 444555333 488888
Q ss_pred cCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEc
Q 002299 721 LESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLEL 800 (940)
Q Consensus 721 L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 800 (940)
+++|.++.+|.. ..+|+.|+|++|++.. +|.. .++|+.|++++|.. ..+|..+ .+|+.|++
T Consensus 329 Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L-~~LP~l~-----------~~L~~LdL 389 (788)
T PRK15387 329 AYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL-TSLPALP-----------SGLKELIV 389 (788)
T ss_pred cccCcccccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccc-ccCcccc-----------cccceEEe
Confidence 888888888752 2578888888876553 4542 35778888887643 3344322 57888899
Q ss_pred CCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEE
Q 002299 801 NNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDS 880 (940)
Q Consensus 801 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L 880 (940)
++|.+. .+|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|+++.+|.+ +.++++|+.|
T Consensus 390 s~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~LP~s-----------l~~L~~L~~L 450 (788)
T PRK15387 390 SGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRLPES-----------LIHLSSETTV 450 (788)
T ss_pred cCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccccChH-----------HhhccCCCeE
Confidence 888655 45542 3678889999988765 6643 35678889999988776643 4467889999
Q ss_pred eccCCCCCcccCCCc
Q 002299 881 YLDDCPNLHRLPDEL 895 (940)
Q Consensus 881 ~L~~n~~~~~~p~~~ 895 (940)
+|++|++.+..|..+
T Consensus 451 dLs~N~Ls~~~~~~L 465 (788)
T PRK15387 451 NLEGNPLSERTLQAL 465 (788)
T ss_pred ECCCCCCCchHHHHH
Confidence 999998877655433
No 16
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.77 E-value=1.9e-19 Score=168.72 Aligned_cols=129 Identities=31% Similarity=0.571 Sum_probs=108.7
Q ss_pred EEEcCcccccCCcchHHHHHHHHhC--CCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHHHHHHHH
Q 002299 24 VFLSFRGEDTRGNFTSHLFSALSKK--HIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLDELLKII 100 (940)
Q Consensus 24 vFis~~~~d~~~~f~~~l~~~L~~~--g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El~~~~ 100 (940)
|||||++.+.+..|+++|..+|++. |+++|+++ |+.+|..+.+++.++|++||++|+|+|++|+.|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444468999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HhhccCC--CEEEEEEcccCCcchh-hcccchhHHHHHHhhcch-----hHHHHHHHHHH
Q 002299 101 DCKNNSG--QMVIPVFYRVDPSHVR-KQIGSFGDSISNLEERFP-----EKMQRWRNALT 152 (940)
Q Consensus 101 ~~~~~~~--~~v~pvf~~v~p~~v~-~~~~~~~~~~~~~~~~~~-----~~~~~w~~~l~ 152 (940)
++....+ ..|+|+||++.+++++ .+.+.+...+........ .....|+++..
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9986654 8999999999999999 688877776655444322 35677887653
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.4e-17 Score=192.82 Aligned_cols=258 Identities=22% Similarity=0.231 Sum_probs=194.8
Q ss_pred cceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCcccccc
Q 002299 585 VRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSS 664 (940)
Q Consensus 585 L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 664 (940)
-..|+++++.++++ |..+. .+|+.|++++|++. .+|.+ +++|++|++++|.+ ..+|..
T Consensus 203 ~~~LdLs~~~LtsL----------------P~~l~--~~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N~L-tsLP~l 260 (788)
T PRK15387 203 NAVLNVGESGLTTL----------------PDCLP--AHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQL-TSLPVL 260 (788)
T ss_pred CcEEEcCCCCCCcC----------------Ccchh--cCCCEEEccCCcCC-CCCCC--CCCCcEEEecCCcc-CcccCc
Confidence 44677777777654 55554 48999999999754 46643 68999999999854 456643
Q ss_pred ccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEe
Q 002299 665 IQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDL 744 (940)
Q Consensus 665 ~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l 744 (940)
.++|+.|++++|. +..+|. ...+|+.|++++|. +..+|... .+|+.|++++|.++.+|.. ..+|+.|++
T Consensus 261 ---p~sL~~L~Ls~N~-L~~Lp~--lp~~L~~L~Ls~N~-Lt~LP~~p-~~L~~LdLS~N~L~~Lp~l---p~~L~~L~L 329 (788)
T PRK15387 261 ---PPGLLELSIFSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSLPVLP-PGLQELSVSDNQLASLPAL---PSELCKLWA 329 (788)
T ss_pred ---ccccceeeccCCc-hhhhhh--chhhcCEEECcCCc-cccccccc-cccceeECCCCccccCCCC---ccccccccc
Confidence 4689999999985 455655 24679999999985 55666543 3699999999999998863 346888999
Q ss_pred cCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEee
Q 002299 745 LNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKI 824 (940)
Q Consensus 745 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 824 (940)
++|.+. .+|.. ..+|+.|++++|.. +.+|..| ++|+.|++++|.+. .+|.. ..+|+.|++
T Consensus 330 s~N~L~-~LP~l---p~~Lq~LdLS~N~L-s~LP~lp-----------~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdL 389 (788)
T PRK15387 330 YNNQLT-SLPTL---PSGLQELSVSDNQL-ASLPTLP-----------SELYKLWAYNNRLT-SLPAL---PSGLKELIV 389 (788)
T ss_pred ccCccc-ccccc---ccccceEecCCCcc-CCCCCCC-----------cccceehhhccccc-cCccc---ccccceEEe
Confidence 998765 45542 35899999999654 4455443 67889999998765 46653 357999999
Q ss_pred eCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhh
Q 002299 825 IDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRL 904 (940)
Q Consensus 825 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 904 (940)
++|.+.. +|.. .++|+.|++++|.++.+|.. ..+|+.|++++|.+. .+|..+.++++|+.|
T Consensus 390 s~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l--------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 390 SGNRLTS-LPVL---PSELKELMVSGNRLTSLPML--------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred cCCcccC-CCCc---ccCCCEEEccCCcCCCCCcc--------------hhhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 9999875 6643 36899999999999887731 245788999999876 589999999999999
Q ss_pred hccCCccCCC
Q 002299 905 YAEGKCSDRS 914 (940)
Q Consensus 905 ~l~~n~~~~~ 914 (940)
++++|.+...
T Consensus 451 dLs~N~Ls~~ 460 (788)
T PRK15387 451 NLEGNPLSER 460 (788)
T ss_pred ECCCCCCCch
Confidence 9999987643
No 18
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.75 E-value=6.3e-18 Score=159.40 Aligned_cols=134 Identities=40% Similarity=0.720 Sum_probs=111.5
Q ss_pred cccEEEcCcc-cccCCcchHHHHHHHHhCCCcEEecCCCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHHHHHHH
Q 002299 21 KYDVFLSFRG-EDTRGNFTSHLFSALSKKHIETFIDDQLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLDELLKI 99 (940)
Q Consensus 21 ~~dvFis~~~-~d~~~~f~~~l~~~L~~~g~~~f~d~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El~~~ 99 (940)
+|||||||++ ++..+.|+.+|..+|...|+.+|.|+....|.... +|.++|++|+++|+|+|++|..|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 55667899999999999999999997544444433 999999999999999999999999999999999
Q ss_pred HHhhcc-CCCEEEEEEcccCCcchhhcccchhHHHHHHhhcchhHH--HHHHHHHHHHh
Q 002299 100 IDCKNN-SGQMVIPVFYRVDPSHVRKQIGSFGDSISNLEERFPEKM--QRWRNALTEAA 155 (940)
Q Consensus 100 ~~~~~~-~~~~v~pvf~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~--~~w~~~l~~~~ 155 (940)
+++... ....++||+++..|..+..+.+.+..++.....+..+.. +.|+..+.+++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 987654 567999999999998899999999888877644444333 57888776654
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=6.7e-19 Score=196.43 Aligned_cols=312 Identities=22% Similarity=0.190 Sum_probs=178.3
Q ss_pred cceEEEecCCCcccccCCCCCC---CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCc
Q 002299 561 LRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTK 637 (940)
Q Consensus 561 Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~ 637 (940)
+..|++..|.. ...|-.+. .+|+.|++++|.+... |..+..+.+|+.|+++.|. +..
T Consensus 23 ~~~ln~~~N~~---l~~pl~~~~~~v~L~~l~lsnn~~~~f----------------p~~it~l~~L~~ln~s~n~-i~~ 82 (1081)
T KOG0618|consen 23 LQILNLRRNSL---LSRPLEFVEKRVKLKSLDLSNNQISSF----------------PIQITLLSHLRQLNLSRNY-IRS 82 (1081)
T ss_pred HHhhhcccccc---ccCchHHhhheeeeEEeeccccccccC----------------CchhhhHHHHhhcccchhh-Hhh
Confidence 77777777622 23231111 4589999999987755 5556666677777777664 333
Q ss_pred CC-CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCC-------------
Q 002299 638 LP-DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGC------------- 702 (940)
Q Consensus 638 ~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~------------- 702 (940)
.| ..+.+.+|++|+|.+| .+..+|.++..+++|++|+++.|.. ..+|..+ .+..+..+..++|
T Consensus 83 vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~ 160 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKK 160 (1081)
T ss_pred Cchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchh
Confidence 33 4666677777777665 5566666677777777777776643 2333322 2344444444444
Q ss_pred ------CCCCcCCCCCcCCccE-EecCCCCCcccCccccccCCCcEEE--------------------ecCCCCCccccc
Q 002299 703 ------TSLKRFPKISSCFLKD-LDLESCGIEELPSSIECLYNLRSID--------------------LLNCTRLEYIAS 755 (940)
Q Consensus 703 ------~~l~~~~~~~~~~L~~-L~L~~~~i~~lp~~~~~l~~L~~L~--------------------l~~~~~~~~~~~ 755 (940)
.....++.... +++. |+|++|.+..+ .+..+++|+.|. .++|.+.+..+.
T Consensus 161 ~~l~~n~l~~~~~~~i~-~l~~~ldLr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~ 237 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIY-NLTHQLDLRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH 237 (1081)
T ss_pred hhhhhhhcccchhcchh-hhheeeecccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc
Confidence 33333322222 2444 77777776621 123333344333 333333321111
Q ss_pred ccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCc
Q 002299 756 SIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPD 835 (940)
Q Consensus 756 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 835 (940)
.-..+|+.++++++.. ..+|.++..+ .+|+.|+..+|.+ ..+|..+....+|+.|.+..|.+.. +|.
T Consensus 238 --p~p~nl~~~dis~n~l----~~lp~wi~~~-----~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~y-ip~ 304 (1081)
T KOG0618|consen 238 --PVPLNLQYLDISHNNL----SNLPEWIGAC-----ANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEY-IPP 304 (1081)
T ss_pred --cccccceeeecchhhh----hcchHHHHhc-----ccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhh-CCC
Confidence 1123455555555332 2334444444 5666666666544 4445445555555555555555443 566
Q ss_pred cCCCCCCCCEEEccCCCCccCchhHHHh---------------------------------------hhccCccccCCCC
Q 002299 836 ELGNLKALEELTVEGTAMREVPESLGQL---------------------------------------LESLPSSLYKSKC 876 (940)
Q Consensus 836 ~l~~l~~L~~L~L~~n~l~~lp~~l~~l---------------------------------------~~~lp~~~~~l~~ 876 (940)
.+.++++|++|+|..|++..+|..+... ....-..+.++++
T Consensus 305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 6777889999999999988888643211 1122223677889
Q ss_pred CCEEeccCCCCCcccCC-CcCCchhhhhhhccCCcc
Q 002299 877 LQDSYLDDCPNLHRLPD-ELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 877 L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~ 911 (940)
|+.|+|++|++.. +|. .+.+++.|+.|+++||.+
T Consensus 385 LKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred eeeeeeccccccc-CCHHHHhchHHhHHHhcccchh
Confidence 9999999998655 454 788999999999999854
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.2e-16 Score=186.73 Aligned_cols=251 Identities=14% Similarity=0.192 Sum_probs=163.1
Q ss_pred CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCcccc
Q 002299 583 TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETH 662 (940)
Q Consensus 583 ~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 662 (940)
.+...|+++++.++.+ |..+. .+|+.|+|++|.+...++.+. ++|++|++++|. +..+|
T Consensus 178 ~~~~~L~L~~~~LtsL----------------P~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP 236 (754)
T PRK15370 178 NNKTELRLKILGLTTI----------------PACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIP 236 (754)
T ss_pred cCceEEEeCCCCcCcC----------------Ccccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCC
Confidence 4555666666555543 43332 468888888886554333333 578888888875 44566
Q ss_pred ccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEE
Q 002299 663 SSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSI 742 (940)
Q Consensus 663 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 742 (940)
..+. ++|+.|++++|.. ..+|..+ ..+|+.|++++|. +..+|.....+|+.|++++|.++.+|..+. ++|+.|
T Consensus 237 ~~l~--~~L~~L~Ls~N~L-~~LP~~l-~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L 309 (754)
T PRK15370 237 ATLP--DTIQEMELSINRI-TELPERL-PSALQSLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHL 309 (754)
T ss_pred hhhh--ccccEEECcCCcc-CcCChhH-hCCCCEEECcCCc-cCccccccCCCCcEEECCCCccccCcccch--hhHHHH
Confidence 5443 4688888888854 3566543 3578888888664 445665444568888888888888776543 467888
Q ss_pred EecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEE
Q 002299 743 DLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASL 822 (940)
Q Consensus 743 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 822 (940)
++++|.+.. +|..+ .++|+.|++++|... .+ |..+. ++|+.|++++|++. .+|..+ .++|+.|
T Consensus 310 ~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~L---P~~l~-------~sL~~L~Ls~N~L~-~LP~~l--p~~L~~L 372 (754)
T PRK15370 310 NVQSNSLTA-LPETL--PPGLKTLEAGENALT-SL---PASLP-------PELQVLDVSKNQIT-VLPETL--PPTITTL 372 (754)
T ss_pred HhcCCcccc-CCccc--cccceeccccCCccc-cC---Chhhc-------CcccEEECCCCCCC-cCChhh--cCCcCEE
Confidence 888876553 44433 357888888877543 22 32221 67888888888654 455544 3578888
Q ss_pred eeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCC
Q 002299 823 KIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNL 888 (940)
Q Consensus 823 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~ 888 (940)
+|++|.+.. +|..+. ++|+.|++++|++..+|.++. ..+..++++..|+|.+|++.
T Consensus 373 dLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~-------~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 373 DVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLP-------HFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHH-------HHhhcCCCccEEEeeCCCcc
Confidence 888887764 565443 368888888888887776543 23345677888888888765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=3.2e-16 Score=183.22 Aligned_cols=245 Identities=17% Similarity=0.232 Sum_probs=172.4
Q ss_pred CcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCC
Q 002299 560 ELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLP 639 (940)
Q Consensus 560 ~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 639 (940)
+...|+++++ .+..+|..+...|+.|++++|.++.+ |..+. .+|++|++++|.+. .+|
T Consensus 179 ~~~~L~L~~~---~LtsLP~~Ip~~L~~L~Ls~N~LtsL----------------P~~l~--~nL~~L~Ls~N~Lt-sLP 236 (754)
T PRK15370 179 NKTELRLKIL---GLTTIPACIPEQITTLILDNNELKSL----------------PENLQ--GNIKTLYANSNQLT-SIP 236 (754)
T ss_pred CceEEEeCCC---CcCcCCcccccCCcEEEecCCCCCcC----------------Chhhc--cCCCEEECCCCccc-cCC
Confidence 3456777665 44566766667788888888887765 33332 47888888888654 445
Q ss_pred C-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccE
Q 002299 640 D-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKD 718 (940)
Q Consensus 640 ~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~ 718 (940)
. + ..+|+.|+|++|.+ ..+|..+. .+|+.|++++|.. ..+|..+ .++|+.|++++|. +..+|.....+|+.
T Consensus 237 ~~l--~~~L~~L~Ls~N~L-~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~ 308 (754)
T PRK15370 237 ATL--PDTIQEMELSINRI-TELPERLP--SALQSLDLFHNKI-SCLPENL-PEELRYLSVYDNS-IRTLPAHLPSGITH 308 (754)
T ss_pred hhh--hccccEEECcCCcc-CcCChhHh--CCCCEEECcCCcc-Ccccccc-CCCCcEEECCCCc-cccCcccchhhHHH
Confidence 3 3 24788888888854 46666553 4788888887744 4566544 3578888888874 45566544456899
Q ss_pred EecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEE
Q 002299 719 LDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKL 798 (940)
Q Consensus 719 L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 798 (940)
|++++|.++.+|..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|... .+ |..+. ++|+.|
T Consensus 309 L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~L---P~~lp-------~~L~~L 372 (754)
T PRK15370 309 LNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VL---PETLP-------PTITTL 372 (754)
T ss_pred HHhcCCccccCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cC---Chhhc-------CCcCEE
Confidence 999999999888755 3689999999987654 66554 368999999997543 33 33221 689999
Q ss_pred EcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCcc----CCCCCCCCEEEccCCCCc
Q 002299 799 ELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDE----LGNLKALEELTVEGTAMR 854 (940)
Q Consensus 799 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~L~~n~l~ 854 (940)
++++|.+. .+|..+. .+|+.|++++|++.. +|.. +..++++..|++.+|++.
T Consensus 373 dLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 373 DVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 99999765 5565443 479999999998874 5544 345688999999999875
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=8.2e-18 Score=170.42 Aligned_cols=303 Identities=14% Similarity=0.082 Sum_probs=190.5
Q ss_pred CcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCCC-cccCCCccE
Q 002299 571 KCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPD-LSLARNLES 649 (940)
Q Consensus 571 ~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~ 649 (940)
..++..+|..+...-..+.|+.|.|+++ -+..|+++++||.|||++|.+...-|+ |.++..|-.
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~i---------------P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSI---------------PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLS 119 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccC---------------ChhhccchhhhceecccccchhhcChHhhhhhHhhhH
Confidence 3455677777777777788888888776 245678888888888888877777775 888888888
Q ss_pred EeccCCCCCcccc-ccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCc
Q 002299 650 LDLWGCSSLMETH-SSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIE 727 (940)
Q Consensus 650 L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~ 727 (940)
|-+.+|+.+..+| ..|++|..|+.|.+.-|+..-.....+ .+++|.. |.+..|.+.
T Consensus 120 Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l----------------------LslyDn~~q 177 (498)
T KOG4237|consen 120 LVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL----------------------LSLYDNKIQ 177 (498)
T ss_pred HHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch----------------------hcccchhhh
Confidence 8777755666666 456778888877776664332222222 2333333 344444444
Q ss_pred ccCc-cccccCCCcEEEecCCCCCc------------ccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 728 ELPS-SIECLYNLRSIDLLNCTRLE------------YIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 728 ~lp~-~~~~l~~L~~L~l~~~~~~~------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
.++. .+..+..++.+.+..|.... ..|..+++.....-..+.+...-+ .+ +.-+.. ...+
T Consensus 178 ~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q-~~--a~kf~c----~~es 250 (498)
T KOG4237|consen 178 SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQ-ED--ARKFLC----SLES 250 (498)
T ss_pred hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcc-cc--hhhhhh----hHHh
Confidence 4444 35555555555555544211 111122222222222222211100 00 000000 0011
Q ss_pred ceEEEcCCCCCCcccc-CccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccC
Q 002299 795 LSKLELNNCSRLESFP-SSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYK 873 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~ 873 (940)
+.+=-.+.|......| ..|..+++|++|++++|.++..-+.+|.++..+++|.|..|++..+.. ..|.+
T Consensus 251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~----------~~f~~ 320 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS----------GMFQG 320 (498)
T ss_pred HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH----------Hhhhc
Confidence 1111112222222222 357899999999999999999888899999999999999999876543 23678
Q ss_pred CCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCCccchhcccchhhhhhHHhhh
Q 002299 874 SKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRSTLVYYISRDAELMRNWVHHS 934 (940)
Q Consensus 874 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~~~~~~~~~~~~~ 934 (940)
+..|+.|+|.+|+++...|.+|..+.+|.+|++-+|++.|.+ ...++..|+...
T Consensus 321 ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC-------~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 321 LSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC-------RLAWLGEWLRKK 374 (498)
T ss_pred cccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc-------chHHHHHHHhhC
Confidence 999999999999999999999999999999999999887754 445556666543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=5.5e-16 Score=157.32 Aligned_cols=351 Identities=14% Similarity=0.088 Sum_probs=201.6
Q ss_pred ccccCCcceEEeChhhhccCCCcceEEEecCCCcccccCCCCCC---C-CcceEEeCCCCCchh------hhhh---hcc
Q 002299 539 LDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAPF---T-DVRYFEWHKSPLKSL------NIRA---ENL 605 (940)
Q Consensus 539 l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~---~-~L~~L~l~~~~l~~l------~l~~---~~L 605 (940)
+++..+. ...+++.+|+.+++||.|+|++|+. ..+....| . -++.+..++|.|+.+ .+.. .-+
T Consensus 72 irLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~I---s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 72 IRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNI---SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred EEeccCC-cccCChhhccchhhhceecccccch---hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3444443 5689999999999999999999944 44444444 3 334455666999888 1111 122
Q ss_pred ccccccccccccccccCCCceeeCCCCCCCCcCC-CcccCCCccEEeccCCCCCc------------cccccccCCCccc
Q 002299 606 VSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLP-DLSLARNLESLDLWGCSSLM------------ETHSSIQYLNKLA 672 (940)
Q Consensus 606 ~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~------------~~~~~~~~l~~L~ 672 (940)
.-+.+.....+.+..+++|..|.+.+|.+..... .|..+..++++.+..|.++. ..|..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 2223333445667888888889998886544433 38888888888888775322 1122222211111
Q ss_pred EE-------------------------EecCCCCCcccCCcc--CCCCCCEEEecCCCCCCcCCCCCcC--CccEEecCC
Q 002299 673 FL-------------------------YLVSCESLRSLPHTI--RSESLFELRLSGCTSLKRFPKISSC--FLKDLDLES 723 (940)
Q Consensus 673 ~L-------------------------~l~~~~~~~~l~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~--~L~~L~L~~ 723 (940)
-. -.+.|......|... .+++|++|+|++|..-..-+..+.. .+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 11 111221222222221 4788888888887644333322222 588888888
Q ss_pred CCCcccCcc-ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcC--CCCCcchhccc------cccCCC
Q 002299 724 CGIEELPSS-IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKF--PEIPSCIIDEA------GIKRQA 794 (940)
Q Consensus 724 ~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~------~~~~~~ 794 (940)
|++..+... |.++..|+.|+|.+|++....|.+|..+.+|.+|++-.|+..-.- ..+-.|+..-. --+...
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~ 387 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGF 387 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCch
Confidence 888866554 677888888888888888888888888888888888665422100 00001110000 001123
Q ss_pred ceEEEcCCCCCCcc---ccC---------ccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHH
Q 002299 795 LSKLELNNCSRLES---FPS---------SLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQ 862 (940)
Q Consensus 795 L~~L~L~~~~~~~~---~~~---------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 862 (940)
++.+.+++..+.+. .|+ .-..++.+.+..=-.|..+..+|..+. ..-.+|++.+|.++.+|..
T Consensus 388 ~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~--- 462 (498)
T KOG4237|consen 388 VRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE--- 462 (498)
T ss_pred hccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH---
Confidence 44555554433211 111 111233343332222233334443331 2456778888888777753
Q ss_pred hhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCC
Q 002299 863 LLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 863 l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n 909 (940)
.+.+| .+++++|++...--..|.++++|.+|-++.|
T Consensus 463 ----------~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 463 ----------LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ----------HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 25567 8899999887655667888888888887765
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=9.4e-16 Score=137.49 Aligned_cols=174 Identities=23% Similarity=0.294 Sum_probs=127.2
Q ss_pred CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
+++.|.|++|+++.+|+.+..+.+|+.|++++|. ++.+|..+..++.|+.|+++-|.. ...|..++.+ +.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl----~~lprgfgs~-----p~ 103 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRL----NILPRGFGSF-----PA 103 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhh----hcCccccCCC-----ch
Confidence 4778888889999899989999999999998864 556777888888899888876433 2345555555 77
Q ss_pred ceEEEcCCCCCCc-cccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccC
Q 002299 795 LSKLELNNCSRLE-SFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYK 873 (940)
Q Consensus 795 L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~ 873 (940)
|+.|+|++|+..+ .+|..|..+..|+.|.+++|.+- .+|..++.+++|+.|.+..|.+-++|..++ .
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig-----------~ 171 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIG-----------D 171 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHH-----------H
Confidence 8888888776643 67777888888888888888764 577778888888888888888777775554 4
Q ss_pred CCCCCEEeccCCCCCcccCCCcCCch---hhhhhhccCCcc
Q 002299 874 SKCLQDSYLDDCPNLHRLPDELGSLE---ALKRLYAEGKCS 911 (940)
Q Consensus 874 l~~L~~L~L~~n~~~~~~p~~~~~l~---~L~~L~l~~n~~ 911 (940)
++.|+.|.+.+|++.- +|+.++++. +=+.+.+.+|++
T Consensus 172 lt~lrelhiqgnrl~v-lppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTV-LPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred HHHHHHHhcccceeee-cChhhhhhhhhhhHHHHhhhhCCC
Confidence 6778888888887544 565554442 223445555554
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=1.2e-15 Score=166.60 Aligned_cols=262 Identities=17% Similarity=0.125 Sum_probs=145.6
Q ss_pred ccccccCCCceeeCCCCCCCCc----CC-CcccCCCccEEeccCCCCC------ccccccccCCCcccEEEecCCCCCcc
Q 002299 616 DDVQNLVNLKEIDLSDSKQLTK----LP-DLSLARNLESLDLWGCSSL------METHSSIQYLNKLAFLYLVSCESLRS 684 (940)
Q Consensus 616 ~~~~~l~~L~~L~L~~~~~~~~----~~-~l~~l~~L~~L~L~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~ 684 (940)
..+..+.+|+.|++++|.+... ++ .+...++|++|+++++... ..++..+..+++|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3355667788888888865321 22 2556677888888876443 12334556677788888877755433
Q ss_pred cCCcc-CC---CCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCc-----ccCcccccc-CCCcEEEecCCCCCc---
Q 002299 685 LPHTI-RS---ESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIE-----ELPSSIECL-YNLRSIDLLNCTRLE--- 751 (940)
Q Consensus 685 l~~~~-~l---~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~~~~--- 751 (940)
.+..+ .+ ++|++|+++ +|.++ .+...+..+ ++|+.|++++|.+..
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls----------------------~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLN----------------------NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHHHHHhccCcccEEEee----------------------CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 22221 11 224444444 44443 122234445 677777777776552
Q ss_pred -ccccccCCCCCCcEEEecCCCCCCc-CCCCCcchhccccccCCCceEEEcCCCCCCc----cccCccCCCCCccEEeee
Q 002299 752 -YIASSIFTLKSLESIRISKCSNLRK-FPEIPSCIIDEAGIKRQALSKLELNNCSRLE----SFPSSLCMFESLASLKII 825 (940)
Q Consensus 752 -~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~ 825 (940)
.++..+..+++|++|++++|..... ++.++..+... ++|+.|++++|.+.. .++..+..+++|+.|+++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-----~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-----CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-----CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 2233445566777777777653310 01111112111 577777777776542 233345567788888888
Q ss_pred CCCCCCCCC----ccC-CCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcc----cCCCcC
Q 002299 826 DCPRLDGLP----DEL-GNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHR----LPDELG 896 (940)
Q Consensus 826 ~~~~~~~~~----~~l-~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~----~p~~~~ 896 (940)
+|++.+... ..+ ...+.|++|++++|.++... . ..+...+..+++|+.+++++|.+... +...+.
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~--~----~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDG--A----KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHH--H----HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 887664111 111 12467888888888775211 1 11222333457788888888877643 333343
Q ss_pred Cc-hhhhhhhccCCc
Q 002299 897 SL-EALKRLYAEGKC 910 (940)
Q Consensus 897 ~l-~~L~~L~l~~n~ 910 (940)
.. +.|+.|++.+|+
T Consensus 304 ~~~~~~~~~~~~~~~ 318 (319)
T cd00116 304 EPGNELESLWVKDDS 318 (319)
T ss_pred hcCCchhhcccCCCC
Confidence 34 677777777764
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-15 Score=137.15 Aligned_cols=188 Identities=25% Similarity=0.334 Sum_probs=141.0
Q ss_pred CCccCCCCCCEEEecCCCCCCcCCCCCcC-CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCc
Q 002299 686 PHTIRSESLFELRLSGCTSLKRFPKISSC-FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLE 764 (940)
Q Consensus 686 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 764 (940)
|..+.+..+..|.+++|......|.+... +|+.|++++|+|+++|.+++.+++|+.|++.-| .+..+|..|+.+|.|+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 33444555555556665433322322221 588888899999999999999999999999864 5667899999999999
Q ss_pred EEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCC
Q 002299 765 SIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALE 844 (940)
Q Consensus 765 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 844 (940)
.|++++|+..+ ..+|..+..+ ..|+-|+|++|.+ +.+|..++.+++|+.|.+.+|.+.+ +|..++.++.|+
T Consensus 106 vldltynnl~e--~~lpgnff~m-----~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lr 176 (264)
T KOG0617|consen 106 VLDLTYNNLNE--NSLPGNFFYM-----TTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLR 176 (264)
T ss_pred hhhcccccccc--ccCCcchhHH-----HHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHH
Confidence 99999987654 2345555444 7889999999854 6788889999999999999999885 899999999999
Q ss_pred EEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCccc
Q 002299 845 ELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRL 891 (940)
Q Consensus 845 ~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~ 891 (940)
+|++.+|.++.+|+.++.+. -..+=+.+.+.+|+....+
T Consensus 177 elhiqgnrl~vlppel~~l~--------l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPPELANLD--------LVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHhcccceeeecChhhhhhh--------hhhhHHHHhhhhCCCCChH
Confidence 99999999999998776541 1122344556666655433
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=4.2e-12 Score=159.14 Aligned_cols=297 Identities=13% Similarity=0.100 Sum_probs=181.9
Q ss_pred cCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHH
Q 002299 187 FQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (940)
+|.....+|-|..-++.+.. ....+++.|+|++|.||||++..+++. ++.++|+..-.. ..+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~l~~~---d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYSLDES---DNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEecCcc---cCCHHHHHH
Confidence 45667788999877666643 235788999999999999999998863 236889864221 223333444
Q ss_pred HHHHHhhCCCC-------------CCCchhhhHHHHHhhhc--CCceEEEEeCCCChHH--HH-HHHcccCCCCCCcEEE
Q 002299 267 QLLSTLLDDRN-------------VKNFPYIILNFQSKRFS--CKKVLIVFDDVTHLKQ--IE-FLIGRLDWFASGSRII 328 (940)
Q Consensus 267 ~l~~~~~~~~~-------------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~--~~-~l~~~l~~~~~gs~ii 328 (940)
.++..+..... ...........+...+. +.+++||+||+...+. +. .+..-+....++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 44444321100 00111222222222222 6789999999966431 22 2222222235677888
Q ss_pred EEeCChhhhh--hC-CCCcEEEcC----CCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcC
Q 002299 329 ITTRDKQVLS--NC-RVDQIYDVK----ELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSG 401 (940)
Q Consensus 329 iTtR~~~~~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 401 (940)
||||...-.. .. ......++. +|+.+|+.++|....... -..+.+.++.+.++|.|+++..++..++.
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9999842221 11 112345555 999999999998765221 12345788999999999999998877754
Q ss_pred CCHHHHHHHHHHHhcCCCchHHHHHHh-hhcCCChhhHHHHHhhhcccCCCCHHHHHHHHHHCCCCchhchHHHHhccce
Q 002299 402 RRKEEWKSAMRKLEIVPHMEIQEVLKI-SYDGLDGHEQDIFLDIACFLVGEDRDQVIRFLDSCGFFPEIGLRVLVDKSLI 480 (940)
Q Consensus 402 ~~~~~w~~~l~~l~~~~~~~i~~~l~~-s~~~L~~~~k~~~l~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll 480 (940)
.... .......+.......+...+.- .++.||++.+++++..|+++ .++.+.+..+.. .-.....++.|.+.+++
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~ 307 (903)
T PRK04841 232 NNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLF 307 (903)
T ss_pred CCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCe
Confidence 3210 0111122221123345554433 37899999999999999986 556555544432 12346678899999986
Q ss_pred EEe----CCeeeehHHHHHHHHHHHhhc
Q 002299 481 TID----YNTIKMHDLLRDMGREIVRKE 504 (940)
Q Consensus 481 ~~~----~~~~~mH~lv~~~~~~~~~~~ 504 (940)
... ...|+.|++++++.+.....+
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 532 236999999999998876443
No 28
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.47 E-value=2.4e-14 Score=126.18 Aligned_cols=87 Identities=31% Similarity=0.545 Sum_probs=75.4
Q ss_pred EEEcCcccccCCcchHHHHHHHHhCCCcEEecCCCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHHHHHHHHHhh
Q 002299 24 VFLSFRGEDTRGNFTSHLFSALSKKHIETFIDDQLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLDELLKIIDCK 103 (940)
Q Consensus 24 vFis~~~~d~~~~f~~~l~~~L~~~g~~~f~d~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El~~~~~~~ 103 (940)
|||||+++| +.|+.+|.+.|+++|+++|.|.++.+|+.+.++|.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 4799999999999999999999899999999999999999999999999999999999999998843
Q ss_pred ccCCCEEEEEEcc
Q 002299 104 NNSGQMVIPVFYR 116 (940)
Q Consensus 104 ~~~~~~v~pvf~~ 116 (940)
.+..++||..+
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 45579999854
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=1.8e-14 Score=157.25 Aligned_cols=261 Identities=18% Similarity=0.154 Sum_probs=159.6
Q ss_pred CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCC------cCC-CcccCCCccEEeccCC
Q 002299 583 TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLT------KLP-DLSLARNLESLDLWGC 655 (940)
Q Consensus 583 ~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~------~~~-~l~~l~~L~~L~L~~~ 655 (940)
..|++|+++++.+..-.+. .++..+...++|++|+++++.+.. .++ .+..+++|++|++++|
T Consensus 23 ~~L~~l~l~~~~l~~~~~~-----------~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAK-----------ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred hhccEEeecCCCCcHHHHH-----------HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 6688888888877543111 234556778889999999986542 111 2667889999999999
Q ss_pred CCCccccccccCCCc---ccEEEecCCCCCccc----CCcc-CC-CCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCC
Q 002299 656 SSLMETHSSIQYLNK---LAFLYLVSCESLRSL----PHTI-RS-ESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGI 726 (940)
Q Consensus 656 ~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~l----~~~~-~l-~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i 726 (940)
......+..+..+.+ |++|++++|...... ...+ .+ ++ |++|++++|.+
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~----------------------L~~L~L~~n~l 149 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA----------------------LEKLVLGRNRL 149 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC----------------------ceEEEcCCCcC
Confidence 877666655555555 999999999654211 1111 12 34 45555555555
Q ss_pred c-----ccCccccccCCCcEEEecCCCCCc----ccccccCCCCCCcEEEecCCCCCCcCC-CCCcchhccccccCCCce
Q 002299 727 E-----ELPSSIECLYNLRSIDLLNCTRLE----YIASSIFTLKSLESIRISKCSNLRKFP-EIPSCIIDEAGIKRQALS 796 (940)
Q Consensus 727 ~-----~lp~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~L~ 796 (940)
+ .++..+..+++|+.|++++|.+.+ .++..+..+++|++|++++|.....-. .+...+.. +++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~-----~~~L~ 224 (319)
T cd00116 150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS-----LKSLE 224 (319)
T ss_pred CchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc-----cCCCC
Confidence 4 233445566777778877776653 223334455678888887765331100 01111111 26788
Q ss_pred EEEcCCCCCCccccCcc-----CCCCCccEEeeeCCCCCC----CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhcc
Q 002299 797 KLELNNCSRLESFPSSL-----CMFESLASLKIIDCPRLD----GLPDELGNLKALEELTVEGTAMREVPESLGQLLESL 867 (940)
Q Consensus 797 ~L~L~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~l 867 (940)
+|++++|+........+ ...+.|+.|++++|.+.. .+...+..+++|+++++++|.+..-+.. .+
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~------~~ 298 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ------LL 298 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH------HH
Confidence 88888886654111111 134789999999998763 2344566678999999999988754321 11
Q ss_pred CccccCC-CCCCEEeccCCCC
Q 002299 868 PSSLYKS-KCLQDSYLDDCPN 887 (940)
Q Consensus 868 p~~~~~l-~~L~~L~L~~n~~ 887 (940)
...+... +.|+.|++.+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 299 AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhhcCCchhhcccCCCCC
Confidence 1222223 6788888888763
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=2.4e-09 Score=120.21 Aligned_cols=247 Identities=15% Similarity=0.106 Sum_probs=145.8
Q ss_pred CCCCCccchhhhHHHHHHHhhcC--CCCeeEEEEEecCCchhhHHHHHHHHHhhcccc--ceEEEecchhhhccCCHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTG--SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE--GSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l 264 (940)
..++.++||++++++|...+... ....+.+.|+|++|+|||++++.+++.+..... ..+++.+. .......+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~----~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ----IDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC----cCCCHHHH
Confidence 35678999999999999888542 233456789999999999999999998765542 23444432 22344566
Q ss_pred HHHHHHHhhCCCC--CCCchhhhHHHHHhhhc--CCceEEEEeCCCChH------HHHHHHcccCCCCCCcE--EEEEeC
Q 002299 265 RQQLLSTLLDDRN--VKNFPYIILNFQSKRFS--CKKVLIVFDDVTHLK------QIEFLIGRLDWFASGSR--IIITTR 332 (940)
Q Consensus 265 ~~~l~~~~~~~~~--~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--iiiTtR 332 (940)
..+++.++..... ...+.+.....+.+.+. +++.+||+|+++... .+..+...... .++++ +|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEEC
Confidence 6777777654221 11233455556666554 456899999997753 24444332221 22333 566655
Q ss_pred ChhhhhhC-------CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH----hcCChhhHHHHhhhh--
Q 002299 333 DKQVLSNC-------RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKY----AKGVPLALKVLGSFL-- 399 (940)
Q Consensus 333 ~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~----~~g~PLal~~~~~~l-- 399 (940)
...+.... .....+.+++++.++..+++..++-..-....-..+..+.+++. .|..+.|+..+-...
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 54332211 11246789999999999999877632111111112333444444 455666766553321
Q ss_pred ---cCC---CHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhhcc
Q 002299 400 ---SGR---RKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIACF 447 (940)
Q Consensus 400 ---~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la~f 447 (940)
++. +.+.+..+.+... .....-.+..||.+.|..+..++..
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111 4555666555541 2234456789999998888766644
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.18 E-value=8.1e-11 Score=122.06 Aligned_cols=196 Identities=17% Similarity=0.199 Sum_probs=99.9
Q ss_pred ccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHH---------
Q 002299 194 LVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHL--------- 264 (940)
Q Consensus 194 ~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l--------- 264 (940)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+...+.-..++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999998764 34678999999999999999999987543334444433211110 001111
Q ss_pred -HHHHHHHhhCCCC------CCCchhhhHHHHHhhhc--CCceEEEEeCCCChH-------H----HHHHHcccCCCCCC
Q 002299 265 -RQQLLSTLLDDRN------VKNFPYIILNFQSKRFS--CKKVLIVFDDVTHLK-------Q----IEFLIGRLDWFASG 324 (940)
Q Consensus 265 -~~~l~~~~~~~~~------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~----~~~l~~~l~~~~~g 324 (940)
.+.+...+..... ...........+.+.+. +++++||+||++... . +..+...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 1111111111110 01111222233333332 345999999996655 1 2222322222 233
Q ss_pred cEEEEEeCChhhhhh--------CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 325 SRIIITTRDKQVLSN--------CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 325 s~iiiTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
..+|++.....+... .+....+.+++|+.+++++++...+-.. ..-+...+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 344455444433322 2333459999999999999998865333 11112345578999999999998864
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=1.9e-09 Score=116.34 Aligned_cols=269 Identities=17% Similarity=0.144 Sum_probs=145.2
Q ss_pred CCccchhhhHHHHHHHhhcC---CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 192 KDLVGVECRIKEIELLLRTG---SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
..|||++..+++|..++... ......+.|+|++|+|||+||+.+++.+...+. +. ..... .....+. ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~-~~~~~---~~~~~l~-~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---IT-SGPAL---EKPGDLA-AI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Ee-ccchh---cCchhHH-HH
Confidence 47999999999998888632 233456889999999999999999997754321 11 11000 0111111 11
Q ss_pred HHHhhCCCC-C----CCchhhhHHHHHhhhcCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhhhhC--C
Q 002299 269 LSTLLDDRN-V----KNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVLSNC--R 341 (940)
Q Consensus 269 ~~~~~~~~~-~----~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~--~ 341 (940)
+..+..... - ..-.....+.+...+.+.+..+|+|+..+..++... ..+.+-|..||+...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhh
Confidence 111110000 0 000001112222333333333444443332222110 12345566677765443321 1
Q ss_pred CCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcCCCHHHHHHHHH-HHhcCCCc
Q 002299 342 VDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSGRRKEEWKSAMR-KLEIVPHM 420 (940)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~-~l~~~~~~ 420 (940)
....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+ |..+.. .-......
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRD 220 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHH
Confidence 2356899999999999999988743222 2234667889999999997765554432 111000 00000001
Q ss_pred ---hHHHHHHhhhcCCChhhHHHHH-hhhcccCC-CCHHHHHHHHHHCCCCchhchH-HHHhccceEEe
Q 002299 421 ---EIQEVLKISYDGLDGHEQDIFL-DIACFLVG-EDRDQVIRFLDSCGFFPEIGLR-VLVDKSLITID 483 (940)
Q Consensus 421 ---~i~~~l~~s~~~L~~~~k~~~l-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sll~~~ 483 (940)
.....+...|..+++..+..+. .++.+..+ ...+.+...+.......+..++ .|++++|+...
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 1222256678889988888776 33555433 4566666666555455566677 69999999644
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.11 E-value=1.4e-09 Score=117.93 Aligned_cols=258 Identities=17% Similarity=0.169 Sum_probs=148.5
Q ss_pred CCCCCCccchhhhHHHHHHHhhc---CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRT---GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (940)
|....+|+|++..++.+..++.. .....+.+.|+|++|+|||++|+.+++.+...+. +.. .........
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~~~~---- 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEKPGD---- 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccChHH----
Confidence 34567899999999999877753 1233557889999999999999999998754321 111 100000001
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--HHHHHHcccC-------------------CCCC
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--QIEFLIGRLD-------------------WFAS 323 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~-------------------~~~~ 323 (940)
...++..+ ++.-+|++|+++... ..+.+...+. ...+
T Consensus 93 l~~~l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 93 LAAILTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 11111111 123366666664422 1111111000 0022
Q ss_pred CcEEEEEeCChhhhhhC--CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcC
Q 002299 324 GSRIIITTRDKQVLSNC--RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSG 401 (940)
Q Consensus 324 gs~iiiTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 401 (940)
.+-|..|+|...+.... .....+.+++++.++..+++.+.+..... .-.++.+..|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 34566677755443221 12356899999999999999988754322 22346788999999999965555444321
Q ss_pred CCHHHHHHHHHHHhcCCCc---hHHHHHHhhhcCCChhhHHHHH-hhhcccCC-CCHHHHHHHHHHCCCCchhchH-HHH
Q 002299 402 RRKEEWKSAMRKLEIVPHM---EIQEVLKISYDGLDGHEQDIFL-DIACFLVG-EDRDQVIRFLDSCGFFPEIGLR-VLV 475 (940)
Q Consensus 402 ~~~~~w~~~l~~l~~~~~~---~i~~~l~~s~~~L~~~~k~~~l-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~ 475 (940)
.|..... -...... .....+...+..|++..+..+. .+..|..+ ...+.+...+.......+..++ .|+
T Consensus 228 ----~~a~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 228 ----DFAQVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ----HHHHHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 1111100 0001111 1233456677889888888775 55555544 4677777776655555565666 899
Q ss_pred hccceEEe
Q 002299 476 DKSLITID 483 (940)
Q Consensus 476 ~~sll~~~ 483 (940)
+.+|+...
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99998644
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.09 E-value=7.7e-09 Score=116.95 Aligned_cols=294 Identities=13% Similarity=0.105 Sum_probs=182.2
Q ss_pred cCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHH
Q 002299 187 FQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (940)
+|..+.+.|-|..-++.+... .+.|.+.|..++|.||||++-+++.+ ...-..+.|+..-. ...+...+..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wlslde---~dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLSLDE---SDNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEeecCC---ccCCHHHHHH
Confidence 455677888888666665432 36789999999999999999999883 34446788886532 2345556666
Q ss_pred HHHHHhhCCCC-------------CCCchhhhHHHHHhhhc--CCceEEEEeCCCChHH------HHHHHcccCCCCCCc
Q 002299 267 QLLSTLLDDRN-------------VKNFPYIILNFQSKRFS--CKKVLIVFDDVTHLKQ------IEFLIGRLDWFASGS 325 (940)
Q Consensus 267 ~l~~~~~~~~~-------------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs 325 (940)
.++..+....+ ...+...+...+..-+. .++..+||||..-..+ ++.+... ..++-
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCe
Confidence 66665542221 11222233333333332 4689999999754322 4444433 45788
Q ss_pred EEEEEeCChhhhhh--C-CCCcEEEcC----CCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhh
Q 002299 326 RIIITTRDKQVLSN--C-RVDQIYDVK----ELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSF 398 (940)
Q Consensus 326 ~iiiTtR~~~~~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 398 (940)
.+|||||...-... + -.+..++++ .|+.+|+.++|...... +-.+.-++.+.+..+|-+-|+..++=.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHHH
Confidence 99999998743221 0 112233443 58999999999876521 112234788999999999999999888
Q ss_pred hcCC-CHHHHHHHHHHHhcCCCchHHH-HHHhhhcCCChhhHHHHHhhhcccCCCCHHHHHHHHHHCCCCchhchHHHHh
Q 002299 399 LSGR-RKEEWKSAMRKLEIVPHMEIQE-VLKISYDGLDGHEQDIFLDIACFLVGEDRDQVIRFLDSCGFFPEIGLRVLVD 476 (940)
Q Consensus 399 l~~~-~~~~w~~~l~~l~~~~~~~i~~-~l~~s~~~L~~~~k~~~l~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~ 476 (940)
+++. +.+.-...+. .. ...+.+ ..+--++.||++.|..++.+|++.. +..+ +...+... -....-+++|.+
T Consensus 237 ~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~e-L~~~Ltg~-~ng~amLe~L~~ 309 (894)
T COG2909 237 LRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDE-LCNALTGE-ENGQAMLEELER 309 (894)
T ss_pred ccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHH-HHHHHhcC-CcHHHHHHHHHh
Confidence 8733 3322111111 10 111111 1233468999999999999988743 1222 22222211 122334788999
Q ss_pred ccceEEe----CCeeeehHHHHHHHHHHHhhc
Q 002299 477 KSLITID----YNTIKMHDLLRDMGREIVRKE 504 (940)
Q Consensus 477 ~sll~~~----~~~~~mH~lv~~~~~~~~~~~ 504 (940)
++|+-.. ++.|+.|.++.+|.+.....+
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 9987643 678999999999998876664
No 35
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=2.6e-08 Score=110.64 Aligned_cols=246 Identities=16% Similarity=0.112 Sum_probs=138.9
Q ss_pred CCCCCccchhhhHHHHHHHhhcC--CCCeeEEEEEecCCchhhHHHHHHHHHhhcccc------ceEEEecchhhhccCC
Q 002299 189 SDNKDLVGVECRIKEIELLLRTG--SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE------GSYFAHNVREAQETGG 260 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 260 (940)
..++.++||+.++++|...+... ....+.+.|+|++|+|||++++++++.+.+..+ ..+|+.+. ....
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----ILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CCCC
Confidence 34568999999999999888641 233456899999999999999999987654322 23455442 2233
Q ss_pred HHHHHHHHHHHhhC--CCC--CCCchhhhHHHHHhhh--cCCceEEEEeCCCChH-----HHHHHHccc-CCCC--CCcE
Q 002299 261 LAHLRQQLLSTLLD--DRN--VKNFPYIILNFQSKRF--SCKKVLIVFDDVTHLK-----QIEFLIGRL-DWFA--SGSR 326 (940)
Q Consensus 261 ~~~l~~~l~~~~~~--~~~--~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~-----~~~~l~~~l-~~~~--~gs~ 326 (940)
...+..++..++.. ... ...+..+....+.+.+ .+++++||||+++... .+..+.... .... ....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 45566666666632 111 1112233344444444 3567899999997762 133332221 1111 2334
Q ss_pred EEEEeCChhhhhhC------C-CCcEEEcCCCCHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHhcCChhhHHHHh
Q 002299 327 IIITTRDKQVLSNC------R-VDQIYDVKELVDVDALKLFSRCAF---GEDDPTASYTKLTHEAVKYAKGVPLALKVLG 396 (940)
Q Consensus 327 iiiTtR~~~~~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 396 (940)
+|.++........+ . ....+.+++++.+|..+++..++- ....-.++..+.+.+++....|.|..+..+.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45555433321111 1 124688999999999999988763 1111222233344556667778875433221
Q ss_pred hh-h----c-C---CCHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhh
Q 002299 397 SF-L----S-G---RRKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIA 445 (940)
Q Consensus 397 ~~-l----~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la 445 (940)
.. . . + -+.+..+.+...+. .....-.+..||.+.+.++..++
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 1 1 1 13445555544431 22334566789988887776655
No 36
>PF05729 NACHT: NACHT domain
Probab=99.06 E-value=1.5e-09 Score=105.66 Aligned_cols=142 Identities=19% Similarity=0.269 Sum_probs=85.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccc------cceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHF------EGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQ 289 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l 289 (940)
|++.|+|.+|+||||+++.++.++.... ...+|+. .+..........+...+......... .... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIA---PIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchh---hhHH---HH
Confidence 5789999999999999999998765543 3344443 33322222222333333333222111 1111 11
Q ss_pred Hh-hhcCCceEEEEeCCCChHH---------HHHHHcccCC--CCCCcEEEEEeCChhh---hhhCCCCcEEEcCCCCHH
Q 002299 290 SK-RFSCKKVLIVFDDVTHLKQ---------IEFLIGRLDW--FASGSRIIITTRDKQV---LSNCRVDQIYDVKELVDV 354 (940)
Q Consensus 290 ~~-~l~~~~~LlVlDdv~~~~~---------~~~l~~~l~~--~~~gs~iiiTtR~~~~---~~~~~~~~~~~l~~L~~~ 354 (940)
.. ..+.++++||+|+++.... +..++..+.. ..++.+++||+|.... .........+++++|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 11 1256899999999965433 1222222111 2578999999998766 223344468999999999
Q ss_pred HHHHHHHHhh
Q 002299 355 DALKLFSRCA 364 (940)
Q Consensus 355 ea~~Lf~~~~ 364 (940)
+..+++.+..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999997664
No 37
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.04 E-value=1.9e-08 Score=106.56 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=105.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHH----
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQS---- 290 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~---- 290 (940)
.+++.|+|++|+||||+++.+++.....--..+|+.. ......++...+...+...... .........+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHH
Confidence 4578999999999999999999876522111223221 1233445666666555332211 11112222222
Q ss_pred hh-hcCCceEEEEeCCCChH--HHHHHHcccC---CCCCCcEEEEEeCChhhhhhC----------CCCcEEEcCCCCHH
Q 002299 291 KR-FSCKKVLIVFDDVTHLK--QIEFLIGRLD---WFASGSRIIITTRDKQVLSNC----------RVDQIYDVKELVDV 354 (940)
Q Consensus 291 ~~-l~~~~~LlVlDdv~~~~--~~~~l~~~l~---~~~~gs~iiiTtR~~~~~~~~----------~~~~~~~l~~L~~~ 354 (940)
.. ..+++.++|+||++... .++.+..... .......|++|.... ..... .....+.+++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 22 26788999999998754 3444432111 112233456665533 11111 12346789999999
Q ss_pred HHHHHHHHhhcCCC--CCCchhhHHHHHHHHHhcCChhhHHHHhhhh
Q 002299 355 DALKLFSRCAFGED--DPTASYTKLTHEAVKYAKGVPLALKVLGSFL 399 (940)
Q Consensus 355 ea~~Lf~~~~~~~~--~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 399 (940)
|..+++...+.... ....-..+..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999887663221 1122335788999999999999999888776
No 38
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.04 E-value=9.5e-09 Score=123.49 Aligned_cols=306 Identities=16% Similarity=0.201 Sum_probs=178.2
Q ss_pred CccchhhhHHHHHHHhhcCC-CCeeEEEEEecCCchhhHHHHHHHHHhhccccceE---------------EEecchhhh
Q 002299 193 DLVGVECRIKEIELLLRTGS-AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSY---------------FAHNVREAQ 256 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~---------------~~~~~~~~~ 256 (940)
.++||+.+++.|...+.... ....++.+.|..|||||+++++|...+.+.+...+ |+..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 37899999999988886533 44668999999999999999999987655421111 111111100
Q ss_pred c----c--CCHHHHHHHHHHHhhCCCCC----------------------CCchhh-----hHHHHHhhh-cCCceEEEE
Q 002299 257 E----T--GGLAHLRQQLLSTLLDDRNV----------------------KNFPYI-----ILNFQSKRF-SCKKVLIVF 302 (940)
Q Consensus 257 ~----~--~~~~~l~~~l~~~~~~~~~~----------------------~~~~~~-----~~~~l~~~l-~~~~~LlVl 302 (940)
. . .....-..+++..++..... ...... ....+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 0 0 00001111222221111100 000000 112222222 446999999
Q ss_pred eCCCChHH-----HHHHHcccC---CCCCCcEEEEEeCCh--hhhhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 002299 303 DDVTHLKQ-----IEFLIGRLD---WFASGSRIIITTRDK--QVLSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTA 372 (940)
Q Consensus 303 Ddv~~~~~-----~~~l~~~l~---~~~~gs~iiiTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 372 (940)
||+...+. ++.+..... ........+.|.+.. .+.........+.+.||+..+...+...........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 99954433 333333321 001112223333322 111122344689999999999999998876432222
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHhhhhcCC-------CHHHHHHHHHHHhcCCC-chHHHHHHhhhcCCChhhHHHHHhh
Q 002299 373 SYTKLTHEAVKYAKGVPLALKVLGSFLSGR-------RKEEWKSAMRKLEIVPH-MEIQEVLKISYDGLDGHEQDIFLDI 444 (940)
Q Consensus 373 ~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~s~~~L~~~~k~~~l~l 444 (940)
..+....|+++..|+|+.+..+-..+... +...|..-...+..... ..+.+.+....+.||...|+++-..
T Consensus 239 -~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 239 -PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred -cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 23568899999999999999998888653 33455554444433221 2245568889999999999999999
Q ss_pred hcccCCCCHHHHHHHHHHCCCCchhchHHHHhccceEEe---------CC---eeeehHHHHHHHHHHH
Q 002299 445 ACFLVGEDRDQVIRFLDSCGFFPEIGLRVLVDKSLITID---------YN---TIKMHDLLRDMGREIV 501 (940)
Q Consensus 445 a~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~---------~~---~~~mH~lv~~~~~~~~ 501 (940)
||+...++.+.+..++...+......+......+++.+. .. +-..|++||+.+-...
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 999999998888887765333222333333344444431 11 2267999988876543
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=1.8e-09 Score=129.13 Aligned_cols=275 Identities=24% Similarity=0.293 Sum_probs=167.3
Q ss_pred CCcceEEEecCCCcccccCCCCCC-CCcceEEeCCCC--CchhhhhhhccccccccccccccccccCCCceeeCCCCCCC
Q 002299 559 PELRFLKFYGQNKCMITHFEGAPF-TDVRYFEWHKSP--LKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQL 635 (940)
Q Consensus 559 ~~Lr~L~l~~~~~~~i~~l~~~~~-~~L~~L~l~~~~--l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~ 635 (940)
...|...+.+|. +...+.... ++|+.|-+..|. +..+ .+..|..++.|++|||++|.-.
T Consensus 523 ~~~rr~s~~~~~---~~~~~~~~~~~~L~tLll~~n~~~l~~i---------------s~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 523 NSVRRMSLMNNK---IEHIAGSSENPKLRTLLLQRNSDWLLEI---------------SGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred hheeEEEEeccc---hhhccCCCCCCccceEEEeecchhhhhc---------------CHHHHhhCcceEEEECCCCCcc
Confidence 566777777773 334444443 567777766664 3322 1234778999999999999888
Q ss_pred CcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccC-CCCCCEEEecCCCCCCcCCC-CC
Q 002299 636 TKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIR-SESLFELRLSGCTSLKRFPK-IS 712 (940)
Q Consensus 636 ~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~-l~~L~~L~l~~~~~l~~~~~-~~ 712 (940)
..+|+ ++.+-+|++|+++++ .+..+|.++++|++|.+|++..+..+..+|.... +.+|++|.+.........-. ..
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred CcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh
Confidence 89996 999999999999996 6779999999999999999999887777766664 99999999876430000000 00
Q ss_pred cCCccEEecCCCCCccc--CccccccCCCc----EEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhc
Q 002299 713 SCFLKDLDLESCGIEEL--PSSIECLYNLR----SIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIID 786 (940)
Q Consensus 713 ~~~L~~L~L~~~~i~~l--p~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 786 (940)
..+|+.|..-.+.+... -..+..++.|. .+.+.+| .....+..+..+.+|+.|.+.+|...+...........
T Consensus 664 l~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~ 742 (889)
T KOG4658|consen 664 LENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV 742 (889)
T ss_pred hhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccccccch
Confidence 01233333322222211 11122233333 2222222 22334455777889999999988765322211110000
Q ss_pred cccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccC
Q 002299 787 EAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREV 856 (940)
Q Consensus 787 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l 856 (940)
.. .++++..+.+.+|..... +.+....|+|+.|.+..|+..+.+......+..++.+.+..+.+..+
T Consensus 743 ~~--~f~~l~~~~~~~~~~~r~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 743 LL--CFPNLSKVSILNCHMLRD-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred hh--hHHHHHHHHhhccccccc-cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 00 024555556666644332 22334568899999999988876665666666666666666555433
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.91 E-value=3.6e-08 Score=100.60 Aligned_cols=152 Identities=13% Similarity=0.188 Sum_probs=93.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
.+.+.|+|++|+|||+||+++++.+..+...+.|+..... .....++ .+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-------~~~~~~~---------------------~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-------QYFSPAV---------------------LENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-------hhhhHHH---------------------Hhhcc
Confidence 3568999999999999999999987666666677654210 0000011 11111
Q ss_pred CCceEEEEeCCCCh---HHHH-HHHcccCCC-CCCcEEEE-EeCC---------hhhhhhCCCCcEEEcCCCCHHHHHHH
Q 002299 295 CKKVLIVFDDVTHL---KQIE-FLIGRLDWF-ASGSRIII-TTRD---------KQVLSNCRVDQIYDVKELVDVDALKL 359 (940)
Q Consensus 295 ~~~~LlVlDdv~~~---~~~~-~l~~~l~~~-~~gs~iii-TtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~L 359 (940)
+.-+||+||++.. .+|+ .+...+... ..|..+|| |+.. +.+...+.....+++++++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2349999999763 2333 222222111 23556655 4443 23444445567899999999999999
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhh
Q 002299 360 FSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGS 397 (940)
Q Consensus 360 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 397 (940)
+.+.+..... .-.+++...|++.+.|..-.+..+-.
T Consensus 170 L~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 170 LQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9998864432 22346678888888887766554433
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.9e-10 Score=115.26 Aligned_cols=210 Identities=17% Similarity=0.096 Sum_probs=115.2
Q ss_pred ccCCCccEEeccCCCCCcccc--ccccCCCcccEEEecCCCCCcccCC--c-cCCCCCCEEEecCCCCCCcCCCCCcCCc
Q 002299 642 SLARNLESLDLWGCSSLMETH--SSIQYLNKLAFLYLVSCESLRSLPH--T-IRSESLFELRLSGCTSLKRFPKISSCFL 716 (940)
Q Consensus 642 ~~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~l~~--~-~~l~~L~~L~l~~~~~l~~~~~~~~~~L 716 (940)
+++.+|+...|.++ .....+ .....|++++.|||+.|-...-.+- . -.+++|+.|+++.|.........
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----- 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----- 191 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----
Confidence 56778888888876 333333 3566788888888888733221111 0 13667777777766432111100
Q ss_pred cEEecCCCCCcccCccccccCCCcEEEecCCCCCcc-cccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 717 KDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEY-IASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 717 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
. -..+++|+.|.|+.|.+... +...+..+|+|+.|.+.+|..... ...+.. .+ ..|
T Consensus 192 ---------~------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~--i~-----~~L 248 (505)
T KOG3207|consen 192 ---------T------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTK--IL-----QTL 248 (505)
T ss_pred ---------c------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhh--hh-----hHH
Confidence 0 12355666666666655421 222234466666666666542211 111111 11 567
Q ss_pred eEEEcCCCCCCccc-cCccCCCCCccEEeeeCCCCCC-CCCcc-----CCCCCCCCEEEccCCCCccCchhHHHhhhccC
Q 002299 796 SKLELNNCSRLESF-PSSLCMFESLASLKIIDCPRLD-GLPDE-----LGNLKALEELTVEGTAMREVPESLGQLLESLP 868 (940)
Q Consensus 796 ~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~-~~~~~-----l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp 868 (940)
+.|+|++|++...- -.....||.|..|+++.|.+.+ .+|+. ...+++|++|+++.|++.+.++ +
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s-l-------- 319 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS-L-------- 319 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc-c--------
Confidence 77777777655422 1235667777777777777665 23433 3456778888888887765542 1
Q ss_pred ccccCCCCCCEEeccCCCCCc
Q 002299 869 SSLYKSKCLQDSYLDDCPNLH 889 (940)
Q Consensus 869 ~~~~~l~~L~~L~L~~n~~~~ 889 (940)
..+..+++|+.|.+..|++..
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhccchhhhhhcccccccc
Confidence 123345667777766666654
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=5.9e-10 Score=109.64 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=88.1
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
|++|+|++|.|+.+..++.-+|.++.|++++|.+...- .+..+++|+.|++++|... .+ ..+-.. +-+.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~---~Gwh~K-----LGNI 354 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-EC---VGWHLK-----LGNI 354 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hh---hhhHhh-----hcCE
Confidence 89999999999999999988999999999998776543 3777888999999886432 11 112122 2667
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCC-CCccCCCCCCCCEEEccCCCCccCch
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDG-LPDELGNLKALEELTVEGTAMREVPE 858 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~lp~ 858 (940)
++|.|++|.+- .+ +.+..+-+|..|++++|++... --..++++|.|+.|.|.+|++..+|.
T Consensus 355 KtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 355 KTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeeehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 77777776432 11 2345566677777777766541 12346667777777777777666654
No 43
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.85 E-value=3.5e-09 Score=110.76 Aligned_cols=278 Identities=20% Similarity=0.205 Sum_probs=177.0
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF 293 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 293 (940)
..+.+.++|.|||||||++-.+.. +...|...+|+.......+...+....... +.-. ..+.+.....+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~---~gl~---~~~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGA---LGLH---VQPGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhh---cccc---cccchHHHHHHHHHH
Confidence 457799999999999999999999 888898887776655554433322222221 1111 111123344566677
Q ss_pred cCCceEEEEeCCCChHH-HHHHHcccCCCCCCcEEEEEeCChhhhhhCCCCcEEEcCCCCHH-HHHHHHHHhhcCCCC--
Q 002299 294 SCKKVLIVFDDVTHLKQ-IEFLIGRLDWFASGSRIIITTRDKQVLSNCRVDQIYDVKELVDV-DALKLFSRCAFGEDD-- 369 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~~-- 369 (940)
.+++.++|+||..+... ...+...+....+.-.|+.|+|..... ..+..+.++.|+.. ++.++|...+.....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 78899999999866543 333333333345667789999976433 34467788888876 799998876532111
Q ss_pred -CCchhhHHHHHHHHHhcCChhhHHHHhhhhcCCCHHHHHHHHH----HHhcC------CCchHHHHHHhhhcCCChhhH
Q 002299 370 -PTASYTKLTHEAVKYAKGVPLALKVLGSFLSGRRKEEWKSAMR----KLEIV------PHMEIQEVLKISYDGLDGHEQ 438 (940)
Q Consensus 370 -~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~s~~~L~~~~k 438 (940)
-.........+|.+...|.|++|+.+++..+.....+..+-+. .++.. ........+..||.-|...++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 1222345678999999999999999999998776554443333 22222 122355678999999999999
Q ss_pred HHHHhhhcccCCCCHHHHHHHHHHCC------CCchhchHHHHhccceEEe----CCeeeehHHHHHHHHHHHh
Q 002299 439 DIFLDIACFLVGEDRDQVIRFLDSCG------FFPEIGLRVLVDKSLITID----YNTIKMHDLLRDMGREIVR 502 (940)
Q Consensus 439 ~~~l~la~f~~~~~~~~l~~~~~~~~------~~~~~~l~~L~~~sll~~~----~~~~~mH~lv~~~~~~~~~ 502 (940)
-.|-.++.|...++.+..... ...+ +.....+..+++++++... .-.|+.-+-++.|+-....
T Consensus 243 ~~~~rLa~~~g~f~~~l~~~~-a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLALAV-AAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred HHhcchhhhhhhhcccHHHHH-hcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999888866532221 1111 1123345667888887654 2345555555555544443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.4e-10 Score=116.03 Aligned_cols=147 Identities=24% Similarity=0.217 Sum_probs=84.3
Q ss_pred cccCCCceeeCCCCCCCCcCC---CcccCCCccEEeccCCCCCcc--ccccccCCCcccEEEecCCCCCcccCCcc--CC
Q 002299 619 QNLVNLKEIDLSDSKQLTKLP---DLSLARNLESLDLWGCSSLME--THSSIQYLNKLAFLYLVSCESLRSLPHTI--RS 691 (940)
Q Consensus 619 ~~l~~L~~L~L~~~~~~~~~~---~l~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~l~~~~--~l 691 (940)
+++.+|+.+.|.++.. ..++ ....|++++.|||++|-+... +-.-...|++|+.|+++.|.......... .+
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 5788999999999863 3333 367899999999999843322 22345689999999999986543322222 35
Q ss_pred CCCCEEEecCCCCC--------CcCCCCCcCCccEEecCCCC-CcccCccccccCCCcEEEecCCCCCccc-ccccCCCC
Q 002299 692 ESLFELRLSGCTSL--------KRFPKISSCFLKDLDLESCG-IEELPSSIECLYNLRSIDLLNCTRLEYI-ASSIFTLK 761 (940)
Q Consensus 692 ~~L~~L~l~~~~~l--------~~~~~~~~~~L~~L~L~~~~-i~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~ 761 (940)
+.|+.|.+++|..- ..+| +|+.|+|..|. +..-.....-+..|+.|+|++|++...- ....+.++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fP-----sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFP-----SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCC-----cHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 66666666666422 1112 25555555552 2211112233455555555555444321 12234455
Q ss_pred CCcEEEecCC
Q 002299 762 SLESIRISKC 771 (940)
Q Consensus 762 ~L~~L~l~~~ 771 (940)
.|..|+++.|
T Consensus 272 ~L~~Lnls~t 281 (505)
T KOG3207|consen 272 GLNQLNLSST 281 (505)
T ss_pred chhhhhcccc
Confidence 5555555554
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=1.3e-10 Score=124.11 Aligned_cols=190 Identities=25% Similarity=0.276 Sum_probs=126.2
Q ss_pred CCEEEecCCCCCCcCCCCCcC--CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCC
Q 002299 694 LFELRLSGCTSLKRFPKISSC--FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKC 771 (940)
Q Consensus 694 L~~L~l~~~~~l~~~~~~~~~--~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 771 (940)
-...+++.|.. ..+|.-... .|+.+.|..|.+..+|..+..+..|..|+|+.|.+ ..+|..++.|+ |+.|-+++|
T Consensus 77 t~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRF-SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhcccccc-ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecC
Confidence 34455665542 233322211 57778888888888888888888888888888654 44566566554 777877775
Q ss_pred CCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCC
Q 002299 772 SNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGT 851 (940)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n 851 (940)
+ ++. +|..++.. ..|..|+.+.|.+ ..+|..++.+.+|+.|++..|++.. +|..+..| .|..||+++|
T Consensus 154 k-l~~---lp~~ig~~-----~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 154 K-LTS---LPEEIGLL-----PTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCN 221 (722)
T ss_pred c-ccc---CCcccccc-----hhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccC
Confidence 4 333 33334333 6778888888754 4566667888888888888888765 66666644 4778888888
Q ss_pred CCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCC---CcCCchhhhhhhccCCc
Q 002299 852 AMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPD---ELGSLEALKRLYAEGKC 910 (940)
Q Consensus 852 ~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~l~~n~ 910 (940)
++..||. .|.+|+.|++|-|.+|++.. -|. .-+...-.++|+..-|.
T Consensus 222 kis~iPv-----------~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 222 KISYLPV-----------DFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ceeecch-----------hhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 8776664 45578888888888888654 233 23455667777777763
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=2.2e-09 Score=105.73 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=52.6
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
|.++.|++++|.+...- .+..+++|+.|++++|.+.. +-.+-..+-|.+.|.|++|.+..+. ++.
T Consensus 307 Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LS------------GL~ 371 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLS------------GLR 371 (490)
T ss_pred cceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhh------------hhH
Confidence 55555566555443321 14455566666666655443 2222234455556666666554332 233
Q ss_pred CCCCCCEEeccCCCCCcc-cCCCcCCchhhhhhhccCCcc
Q 002299 873 KSKCLQDSYLDDCPNLHR-LPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~ 911 (940)
.+-+|..|++++|++-+. --..++++|.|+++.+.+|++
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 455566666666655321 112455666666666666654
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=1e-09 Score=117.49 Aligned_cols=156 Identities=20% Similarity=0.136 Sum_probs=122.2
Q ss_pred cccccccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCC
Q 002299 613 RLWDDVQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSE 692 (940)
Q Consensus 613 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~ 692 (940)
.+|..++++..|.+|||+.|++...++.++.| -|+.|.+++| .++.+|..++.+..|..|+.+.|.+....+...++.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 46888999999999999999865555557666 4899999987 678889999999999999999996655555555799
Q ss_pred CCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccC---CCCCCcEEEec
Q 002299 693 SLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIF---TLKSLESIRIS 769 (940)
Q Consensus 693 ~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~ 769 (940)
+|+.|++..|......++.....|..||+++|++..||-.|.+|+.|++|.|.+|.+.. .|..++ ...--++|+..
T Consensus 190 slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecch
Confidence 99999999987666555555557999999999999999999999999999999977543 333332 22234556665
Q ss_pred CC
Q 002299 770 KC 771 (940)
Q Consensus 770 ~~ 771 (940)
-|
T Consensus 269 A~ 270 (722)
T KOG0532|consen 269 AC 270 (722)
T ss_pred hc
Confidence 55
No 48
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.73 E-value=8.2e-07 Score=101.59 Aligned_cols=243 Identities=14% Similarity=0.061 Sum_probs=126.7
Q ss_pred CCCCCccchhhhHHHHHHHhhc---CCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-----cc--ceEEEecchhhhcc
Q 002299 189 SDNKDLVGVECRIKEIELLLRT---GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-----FE--GSYFAHNVREAQET 258 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f~--~~~~~~~~~~~~~~ 258 (940)
..++.++||+.|+++|...|.. +.....++.|+|++|.|||++++.+.+++.+. .+ .++++.+.. .
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~----L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN----V 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----c
Confidence 4457899999999999888764 22233567899999999999999999866432 12 234555421 1
Q ss_pred CCHHHHHHHHHHHhhCCCC-CCCchhhhHHHHHhhh-c--CCceEEEEeCCCChH---H--HHHHHcccCCCCCCcEEEE
Q 002299 259 GGLAHLRQQLLSTLLDDRN-VKNFPYIILNFQSKRF-S--CKKVLIVFDDVTHLK---Q--IEFLIGRLDWFASGSRIII 329 (940)
Q Consensus 259 ~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l-~--~~~~LlVlDdv~~~~---~--~~~l~~~l~~~~~gs~iii 329 (940)
.....+...+..++.+... .........+.+...+ . +...+||||+++... + +-.+.... ...+++|+|
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~--~~s~SKLiL 905 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP--TKINSKLVL 905 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh--hccCCeEEE
Confidence 2334445555555533322 1112223333344333 1 234589999997543 1 22222211 124556544
Q ss_pred --EeCChh--------hhhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCC-C-CCchhhHHHHHHHHHhcCChhhHHHHhh
Q 002299 330 --TTRDKQ--------VLSNCRVDQIYDVKELVDVDALKLFSRCAFGED-D-PTASYTKLTHEAVKYAKGVPLALKVLGS 397 (940)
Q Consensus 330 --TtR~~~--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~-~~~~~~~~~~~i~~~~~g~PLal~~~~~ 397 (940)
.+.... +...++ ...+..++++.++-.+++..++-... . .++..+-+|+.++...|..=.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 332211 111122 23466799999999999998874321 1 1222223333333333444455554433
Q ss_pred hhc--CC---CHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhh
Q 002299 398 FLS--GR---RKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIA 445 (940)
Q Consensus 398 ~l~--~~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la 445 (940)
+.. +. ..+....+..++.. ..+.-....||.+.|-++..+.
T Consensus 985 AgEikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHHH
Confidence 332 11 22333333333221 1123334678888777666444
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=2.2e-08 Score=112.47 Aligned_cols=151 Identities=28% Similarity=0.381 Sum_probs=75.1
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
|+.|++++|.+..+|..+..+++|+.|++++|++.. +|...+.++.|+.|++++|... .+|...... ..|
T Consensus 142 L~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~----~l~~~~~~~-----~~L 211 (394)
T COG4886 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS----DLPPEIELL-----SAL 211 (394)
T ss_pred cccccccccchhhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccc----cCchhhhhh-----hhh
Confidence 555555555555555555556666666665544332 2222234555556666554321 222211111 335
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCC
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSK 875 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~ 875 (940)
++|.+++|... ..+..+..+.++..|.+.+|++.. ++..+..+++|+.|++++|.++.++. +..+.
T Consensus 212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~------------~~~~~ 277 (394)
T COG4886 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS------------LGSLT 277 (394)
T ss_pred hhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc------------ccccC
Confidence 56666655322 233334555555555555555433 24455555566666666666555442 33455
Q ss_pred CCCEEeccCCCCCcc
Q 002299 876 CLQDSYLDDCPNLHR 890 (940)
Q Consensus 876 ~L~~L~L~~n~~~~~ 890 (940)
+|+.|++++|.+...
T Consensus 278 ~l~~L~~s~n~~~~~ 292 (394)
T COG4886 278 NLRELDLSGNSLSNA 292 (394)
T ss_pred ccCEEeccCcccccc
Confidence 566666666555443
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=3.9e-10 Score=114.04 Aligned_cols=237 Identities=19% Similarity=0.167 Sum_probs=114.8
Q ss_pred cccCCCceeeCCCCCCCCcCC-----CcccCCCccEEeccCC---CCCccccc-------cccCCCcccEEEecCCCCCc
Q 002299 619 QNLVNLKEIDLSDSKQLTKLP-----DLSLARNLESLDLWGC---SSLMETHS-------SIQYLNKLAFLYLVSCESLR 683 (940)
Q Consensus 619 ~~l~~L~~L~L~~~~~~~~~~-----~l~~l~~L~~L~L~~~---~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~ 683 (940)
..+..+..|+|++|.+-.... .+.+.++|+..++++- .....+|+ .+...++|++|+||+|-...
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 445667777777775543322 2555667777776652 11122232 33455677777777765443
Q ss_pred ccCCcc-----CCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccC--------------ccccccCCCcEEEe
Q 002299 684 SLPHTI-----RSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELP--------------SSIECLYNLRSIDL 744 (940)
Q Consensus 684 ~l~~~~-----~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp--------------~~~~~l~~L~~L~l 744 (940)
..+..+ ++.+ |++|+|.+|++.... .-...-+.|+++..
T Consensus 107 ~g~~~l~~ll~s~~~----------------------L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTD----------------------LEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred cchHHHHHHHHhccC----------------------HHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 332222 1333 444444444444111 11234566777777
Q ss_pred cCCCCCc----ccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCc----cccCccCCC
Q 002299 745 LNCTRLE----YIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLE----SFPSSLCMF 816 (940)
Q Consensus 745 ~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~l 816 (940)
.+|..-. .+...+...+.|+.+.++.|..- +... .+.......+++|+.|+|.+|.+.. .+...++.+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~---~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR---PEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEeccccc---Cchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 6654322 12223455667777777765433 1111 0000001122666666666665432 233445556
Q ss_pred CCccEEeeeCCCCCCCCC----ccC-CCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCC
Q 002299 817 ESLASLKIIDCPRLDGLP----DEL-GNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPN 887 (940)
Q Consensus 817 ~~L~~L~l~~~~~~~~~~----~~l-~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~ 887 (940)
++|+.|++++|.+...-. +.+ ...|+|+.|.+.+|.++.=. ...+..++...|.|+.|+|++|++
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da------~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA------ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH------HHHHHHHHhcchhhHHhcCCcccc
Confidence 667777777776654211 111 23566666666666654211 001111223355566666666655
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.69 E-value=2.5e-07 Score=96.24 Aligned_cols=217 Identities=20% Similarity=0.300 Sum_probs=121.0
Q ss_pred CCCccchhhhH---HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHH
Q 002299 191 NKDLVGVECRI---KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 191 ~~~~vGr~~~~---~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
-+++||-+..+ .-|.+++.. +.+.-..+||++|+||||||+.++......|...- . ...++.++...
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s---A-----v~~gvkdlr~i 92 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS---A-----VTSGVKDLREI 92 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec---c-----ccccHHHHHHH
Confidence 34555554433 234444543 45666789999999999999999998776664321 1 12233333221
Q ss_pred HHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEE--EeCChhhh---hhC
Q 002299 268 LLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTH--LKQIEFLIGRLDWFASGSRIII--TTRDKQVL---SNC 340 (940)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iii--TtR~~~~~---~~~ 340 (940)
+ + +.-+.+..+++.+|.+|.|.. ..|-+.|++.. ..|.-|+| ||-++... ...
T Consensus 93 ~-e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 I-E----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred H-H----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHh
Confidence 1 1 111233457899999999965 44556666553 45666665 55555321 112
Q ss_pred CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC-----CchhhHHHHHHHHHhcCChhh----HHHHhhhhcCC---CHHHHH
Q 002299 341 RVDQIYDVKELVDVDALKLFSRCAFGEDDP-----TASYTKLTHEAVKYAKGVPLA----LKVLGSFLSGR---RKEEWK 408 (940)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-----~~~~~~~~~~i~~~~~g~PLa----l~~~~~~l~~~---~~~~w~ 408 (940)
....++.+++|+.++-.+++.+.+-..... ..-.++....+++.++|---+ ++.++...+.. ..+..+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~ 232 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLE 232 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 345789999999999999998843221111 112345667788888886443 23333333222 234444
Q ss_pred HHHHHHhcC------CCchHHHHHHhhhcCCChhh
Q 002299 409 SAMRKLEIV------PHMEIQEVLKISYDGLDGHE 437 (940)
Q Consensus 409 ~~l~~l~~~------~~~~i~~~l~~s~~~L~~~~ 437 (940)
+.+++-... .+-++..+|.-|...=++.+
T Consensus 233 ~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dA 267 (436)
T COG2256 233 EILQRRSARFDKDGDAHYDLISALHKSVRGSDPDA 267 (436)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCH
Confidence 444431111 11235556666666655443
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.7e-08 Score=113.34 Aligned_cols=172 Identities=24% Similarity=0.375 Sum_probs=136.2
Q ss_pred CccEEecCCCCCcccCccccccC-CCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLY-NLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQ 793 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (940)
.++.|++.+|.++++|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+.. .++...... +
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~----~l~~~~~~~-----~ 186 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS----DLPKLLSNL-----S 186 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh----hhhhhhhhh-----h
Confidence 48999999999999999888885 9999999997654 44456788999999999998654 233322222 8
Q ss_pred CceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccC
Q 002299 794 ALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYK 873 (940)
Q Consensus 794 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~ 873 (940)
+|+.|++++|.+ ..+|........|++|.+++|+... .+..+..++++..|.+.+|++..++ ..+..
T Consensus 187 ~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~-----------~~~~~ 253 (394)
T COG4886 187 NLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLP-----------ESIGN 253 (394)
T ss_pred hhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeecc-----------chhcc
Confidence 999999999965 4566545556679999999997554 5667888999999999999887654 44567
Q ss_pred CCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 874 SKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 874 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
+++|+.|++++|.+.. ++. +..+.+|+.|++++|..
T Consensus 254 l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 254 LSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccceeccccccccc-ccc-ccccCccCEEeccCccc
Confidence 8889999999998765 444 88999999999999744
No 53
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=1.2e-08 Score=97.32 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=27.0
Q ss_pred cCCCCCccEEeeeCCCCCCCCCccC-CCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCccc
Q 002299 813 LCMFESLASLKIIDCPRLDGLPDEL-GNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRL 891 (940)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~ 891 (940)
+..+++|++|++++|.+.. +++.+ ..+++|++|++++|+|..+.. + ..+..+++|+.|+|.+||+...
T Consensus 60 l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~-l--------~~L~~l~~L~~L~L~~NPv~~~- 128 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNE-L--------EPLSSLPKLRVLSLEGNPVCEK- 128 (175)
T ss_dssp ----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCC-C--------GGGGG-TT--EEE-TT-GGGGS-
T ss_pred ccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHH-h--------HHHHcCCCcceeeccCCcccch-
Confidence 3445555555555555544 22222 235556666666665554321 0 1233455566666666665432
Q ss_pred CC----CcCCchhhhhhhcc
Q 002299 892 PD----ELGSLEALKRLYAE 907 (940)
Q Consensus 892 p~----~~~~l~~L~~L~l~ 907 (940)
+. .+..+|+|+.||-.
T Consensus 129 ~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 129 KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTHHHHHHHH-TT-SEETTE
T ss_pred hhHHHHHHHHcChhheeCCE
Confidence 22 34455555555543
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.66 E-value=4e-07 Score=93.53 Aligned_cols=173 Identities=15% Similarity=0.176 Sum_probs=102.3
Q ss_pred CCccc--hhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHH
Q 002299 192 KDLVG--VECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLL 269 (940)
Q Consensus 192 ~~~vG--r~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 269 (940)
++|++ .+..++++.+++.. ...+.+.|+|++|+|||++|+.++++........+|+.+..-. . .. ..++
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~-~--~~----~~~~ 85 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA-Q--AD----PEVL 85 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH-H--hH----HHHH
Confidence 45552 34466777777543 3356789999999999999999998766554455666542111 0 00 0110
Q ss_pred HHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH---H-HHHHHcccCC-CCCCcEEEEEeCChhh--------
Q 002299 270 STLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK---Q-IEFLIGRLDW-FASGSRIIITTRDKQV-------- 336 (940)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~gs~iiiTtR~~~~-------- 336 (940)
..+. +.-+||+||++... . .+.+...+.. ...+.++|+||+....
T Consensus 86 ---------------------~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 86 ---------------------EGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred ---------------------hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 1111 22389999997543 2 2223222111 1234578998885321
Q ss_pred -hhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhh
Q 002299 337 -LSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGS 397 (940)
Q Consensus 337 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 397 (940)
...+.....+++++++.++...++...+-.... .-..+..+.+++.+.|.|..+..+..
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 112222357899999999999998775532221 22245667788889999887766543
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=5e-09 Score=106.16 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=33.7
Q ss_pred ccEEecCCCCCc-----ccCccccccCCCcEEEecCCCCCcc----cccccCCCCCCcEEEecCCCC
Q 002299 716 LKDLDLESCGIE-----ELPSSIECLYNLRSIDLLNCTRLEY----IASSIFTLKSLESIRISKCSN 773 (940)
Q Consensus 716 L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~ 773 (940)
|+.+.++.|.|. -+...+..+++|+.|||.+|.+... +...+..+++|+.|++++|..
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 555555555544 2233456777777777777665432 233345566777777777643
No 56
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=1.9e-06 Score=96.38 Aligned_cols=177 Identities=21% Similarity=0.337 Sum_probs=105.7
Q ss_pred CCCCCccchhhhHHH---HHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRIKE---IELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
...+.+||.+..+.. +..++..+ ....+.|+|++|+||||+|+.+++.....|.. +... ..+...+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~i- 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKDL- 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHHH-
Confidence 345678998887666 77777543 45568899999999999999999976544421 1111 1111111
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEE--EeCChh--hhh
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIII--TTRDKQ--VLS 338 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iii--TtR~~~--~~~ 338 (940)
++++. .... ...+++.+|++|+++... +.+.+...+. .|..++| ||.+.. +..
T Consensus 78 r~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 11111 1111 113477899999998643 4555554433 3444444 334332 111
Q ss_pred -hCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC-chhhHHHHHHHHHhcCChhhHHHHh
Q 002299 339 -NCRVDQIYDVKELVDVDALKLFSRCAFGEDDPT-ASYTKLTHEAVKYAKGVPLALKVLG 396 (940)
Q Consensus 339 -~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~ 396 (940)
.......+.+.+++.++..+++.+.+....... .-..+..+.+++.++|.|..+..+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 112236789999999999999987653211111 2234667889999999987665443
No 57
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=1.1e-08 Score=97.67 Aligned_cols=141 Identities=21% Similarity=0.161 Sum_probs=44.9
Q ss_pred CCCCcccCccccccCCCcEEEecCCCCCcccccccC-CCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcC
Q 002299 723 SCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIF-TLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELN 801 (940)
Q Consensus 723 ~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 801 (940)
.+.|...|. +.+..+++.|+|.+|.+... ..++ .+.+|+.|++++|... .++.++ .+ ++|+.|+++
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~l~----~L-----~~L~~L~L~ 72 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEGLP----GL-----PRLKTLDLS 72 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S---TT-------------TT--EEE--
T ss_pred ccccccccc-cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccCcc----Ch-----hhhhhcccC
Confidence 344444444 33445678888888766542 2343 4677888888886543 333332 22 778888888
Q ss_pred CCCCCccccCccCCCCCccEEeeeCCCCCC-CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEE
Q 002299 802 NCSRLESFPSSLCMFESLASLKIIDCPRLD-GLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDS 880 (940)
Q Consensus 802 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L 880 (940)
+|.+....+.....+|+|+.|++++|.+.. ..-..+..+++|+.|+|.+|++...+..-.. -+..+|+|+.|
T Consensus 73 ~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~-------vi~~lP~Lk~L 145 (175)
T PF14580_consen 73 NNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLF-------VIYKLPSLKVL 145 (175)
T ss_dssp SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHH-------HHHH-TT-SEE
T ss_pred CCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHH-------HHHHcChhhee
Confidence 887654322212357888888888887765 1224466778888888888887655432111 13456778877
Q ss_pred ecc
Q 002299 881 YLD 883 (940)
Q Consensus 881 ~L~ 883 (940)
|-.
T Consensus 146 D~~ 148 (175)
T PF14580_consen 146 DGQ 148 (175)
T ss_dssp TTE
T ss_pred CCE
Confidence 654
No 58
>PTZ00202 tuzin; Provisional
Probab=98.56 E-value=1.4e-05 Score=85.06 Aligned_cols=167 Identities=15% Similarity=0.086 Sum_probs=104.5
Q ss_pred ccCCCCCCccchhhhHHHHHHHhhcCC-CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHH
Q 002299 186 TFQSDNKDLVGVECRIKEIELLLRTGS-AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~l~~~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (940)
..|.+...|+||+.++.+|...|...+ +..+++.|.|++|+|||||++.+..... ...++.+.. +..++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHH
Confidence 357778999999999999999996433 3456899999999999999999997653 224554432 45788
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhh-----c-CCceEEEEeCC--CChHHHHHHHcccCCCCCCcEEEEEeCChhh
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRF-----S-CKKVLIVFDDV--THLKQIEFLIGRLDWFASGSRIIITTRDKQV 336 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVlDdv--~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~ 336 (940)
.+.++.+++.... ....++.+.+.+.+ . +++.+||+-== .+...+-.=...+.+...-|+|++----+.+
T Consensus 326 Lr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 326 LRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence 8888888875332 22233444444332 2 56677776432 2222211111122223455777775443322
Q ss_pred hhh---CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 337 LSN---CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 337 ~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
-.. ...-..|.++.++.++|.++-.+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111 1223578999999999999876543
No 59
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=7.9e-08 Score=112.99 Aligned_cols=62 Identities=26% Similarity=0.393 Sum_probs=34.5
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
++|+.|+|++|.+...+|..+..+++|+.|+|++|.+.+.+|+.+..+++|+.|+|++|++.
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 55555555555555555555555555555555555555555555555555555555555543
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=9.6e-10 Score=108.29 Aligned_cols=160 Identities=21% Similarity=0.273 Sum_probs=97.7
Q ss_pred CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCC-CcccCCCccEEeccCCCCCccc
Q 002299 583 TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLP-DLSLARNLESLDLWGCSSLMET 661 (940)
Q Consensus 583 ~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~ 661 (940)
..|++||+++..++.-.+ -.-++++.+|+.|.|.++++...+- .+.+-.+|+.|+|+.|......
T Consensus 185 sRlq~lDLS~s~it~stl--------------~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTL--------------HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN 250 (419)
T ss_pred hhhHHhhcchhheeHHHH--------------HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh
Confidence 668888888777665422 2236778888888888886554443 2777788888888888665543
Q ss_pred c--ccccCCCcccEEEecCCCCCcccCCcc---CCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCcccccc
Q 002299 662 H--SSIQYLNKLAFLYLVSCESLRSLPHTI---RSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECL 736 (940)
Q Consensus 662 ~--~~~~~l~~L~~L~l~~~~~~~~l~~~~---~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l 736 (940)
. --+.+++.|..|+++.|......-... -.++|+.|+|+||... | ..+.+..-...+
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-------------l-----~~sh~~tL~~rc 312 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-------------L-----QKSHLSTLVRRC 312 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-------------h-----hhhHHHHHHHhC
Confidence 2 234577778888888775443321111 1355566666665311 0 111222223567
Q ss_pred CCCcEEEecCCCCCcc-cccccCCCCCCcEEEecCCCCC
Q 002299 737 YNLRSIDLLNCTRLEY-IASSIFTLKSLESIRISKCSNL 774 (940)
Q Consensus 737 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 774 (940)
++|..|||++|..+.. ....|.+++.|++|.++.|..+
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 8888888888765442 2234566777888888887654
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=6e-06 Score=94.44 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=111.4
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc--ccceEEEecchhhhccCCHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH--FEGSYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 266 (940)
...+++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+.-. ... ..+ +.-...+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PC--------G~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPC--------GVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCC--------cccHHHH
Confidence 345689999999999999987543 24556799999999999999999865311 100 000 0000000
Q ss_pred HHHHH----hhC-CCCCCCchhhhHHHHHhh----hcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCChh
Q 002299 267 QLLST----LLD-DRNVKNFPYIILNFQSKR----FSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDKQ 335 (940)
Q Consensus 267 ~l~~~----~~~-~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~~ 335 (940)
.+... +.. +.......++..+.+... ..++.-++|||+++.... ++.++..+.......++|++|.+..
T Consensus 81 ~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred HHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 00000 000 000001111222222111 123445889999987654 6666666554456788888877654
Q ss_pred hh-hh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChh-hHHH
Q 002299 336 VL-SN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPL-ALKV 394 (940)
Q Consensus 336 ~~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~ 394 (940)
-. .. ......+.++.++.++..+.+.+.+..... ....+..+.|++.++|..- |+..
T Consensus 161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 32 22 123368999999999999999887633222 2234567788899988653 4443
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.51 E-value=3.1e-06 Score=82.47 Aligned_cols=180 Identities=17% Similarity=0.238 Sum_probs=99.3
Q ss_pred CCCCCCccchhhhHHHHHHHhhc---CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRT---GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (940)
|..-++|||-+..++.+.-++.. ..+...-+.+||++|+||||||.-+++.....|. ++... . -....+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg~--~--i~k~~d- 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSGP--A--IEKAGD- 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEECC--C----SCHH-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccch--h--hhhHHH-
Confidence 34567999999998887766543 2344667889999999999999999998876653 22210 0 001111
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH--HHHHHcccC--------CCCCC----------
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ--IEFLIGRLD--------WFASG---------- 324 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~--------~~~~g---------- 324 (940)
+...+.. ++ ++-+|.+|.++.... -+.+.+.+- ..+++
T Consensus 92 --------------------l~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 --------------------LAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --------------------HHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --------------------HHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1111111 22 345778899976443 233333221 11222
Q ss_pred -cEEEEEeCChhhhhhCCC--CcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhh
Q 002299 325 -SRIIITTRDKQVLSNCRV--DQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFL 399 (940)
Q Consensus 325 -s~iiiTtR~~~~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 399 (940)
+-|=.|||...+...+.. .-+.+++..+.+|-.+...+.+..-. .+-.++.+.+|++.+.|-|--..-+-..+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 335568887665444332 23568999999999999988763322 23345778999999999997655443333
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.50 E-value=2.2e-06 Score=94.12 Aligned_cols=200 Identities=16% Similarity=0.110 Sum_probs=108.5
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccc-eEEEecchhhhccCCHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEG-SYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~l~~ 266 (940)
...+.++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++.+... +.. .+++.+. +..... ...+..
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~-~~~~~~-~~~~~~ 87 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA-DFFDQG-KKYLVE 87 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh-hhhhcc-hhhhhc
Confidence 33467899999999999988653 33457899999999999999999876433 222 2333321 110000 000000
Q ss_pred --HHHHHhhCC-CCCCCchhhhHHHHHhh-----hcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCChh-
Q 002299 267 --QLLSTLLDD-RNVKNFPYIILNFQSKR-----FSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDKQ- 335 (940)
Q Consensus 267 --~l~~~~~~~-~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~~- 335 (940)
......... .......+...+.++.. ....+-+||+||++.... .+.+...+......+++|+|+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00000111111111111 113345899999976532 3334333333345677888775432
Q ss_pred hhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 336 VLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 336 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
+.... .....+++.+++.++..+++.+.+...... -..+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 22221 223578899999999999988876432221 2345678888899887655443
No 64
>PRK08727 hypothetical protein; Validated
Probab=98.50 E-value=3.5e-06 Score=86.18 Aligned_cols=168 Identities=15% Similarity=0.077 Sum_probs=96.0
Q ss_pred CCccchh-hhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHH
Q 002299 192 KDLVGVE-CRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLS 270 (940)
Q Consensus 192 ~~~vGr~-~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (940)
++|++.. ..+..+..+... .....+.|+|..|+|||+|++++++...++...+.|+.... ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~----------~~~~~~- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA----------AAGRLR- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH----------hhhhHH-
Confidence 4455444 344444443322 12245999999999999999999997766655566665311 100000
Q ss_pred HhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH---HHH-HHHcccCC-CCCCcEEEEEeCChh---------h
Q 002299 271 TLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK---QIE-FLIGRLDW-FASGSRIIITTRDKQ---------V 336 (940)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iiiTtR~~~---------~ 336 (940)
+.+. .+ .+.-+||+||++... .++ .+...+.. ...|..||+|++... +
T Consensus 86 ----------------~~~~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 86 ----------------DALE-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred ----------------HHHH-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 0011 11 123489999996431 121 22211111 134667999998532 1
Q ss_pred hhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 337 LSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 337 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
...+.....+++++++.++..+++.+++..... .-.++....|++.++|-.-.+
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 122223468899999999999999987743222 222456677788777655443
No 65
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=1.3e-05 Score=86.96 Aligned_cols=199 Identities=12% Similarity=0.047 Sum_probs=111.3
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh-ccc-cceEEEecchhhhccCCHHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS-KHF-EGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f-~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
|....+++|-+...+.+.+.+..+. -...+.++|+.|+||+|+|..+++.+- +.- .....-.... .....+.-...
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~~~c~~c 92 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAIDPDHPVA 92 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCCCCChHH
Confidence 4556789999999999998887542 245688999999999999999998652 221 1000000000 00000000111
Q ss_pred HHHHHHh-------h---CCCC----CCCchhhhHHHHHhhh-----cCCceEEEEeCCCChHH--HHHHHcccCCCCCC
Q 002299 266 QQLLSTL-------L---DDRN----VKNFPYIILNFQSKRF-----SCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASG 324 (940)
Q Consensus 266 ~~l~~~~-------~---~~~~----~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~g 324 (940)
+.+.... . .... ..-.+++ ++.+.+.+ .+++-++|+|+++..+. ...++..+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000 0 0000 0011222 22222222 24566999999976543 55555555444456
Q ss_pred cEEEEEeCChh-hhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 325 SRIIITTRDKQ-VLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 325 s~iiiTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
+.+|++|.+.. +.... .....+.+.+++.++..+++.+.... .. .+....+++.++|.|+....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 66777776653 33222 33468999999999999999876411 11 122267899999999866554
No 66
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.49 E-value=8e-07 Score=82.44 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=74.7
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhcc-----ccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKH-----FEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQ 289 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l 289 (940)
.+.+.|+|.+|+|||++++.+++..... -..++|+... .......+..++...+..............+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP----SSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH----HHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC----CCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4678999999999999999999876543 2445566542 223677888888888776654445556666777
Q ss_pred HhhhcCCc-eEEEEeCCCCh-H--HHHHHHcccCCCCCCcEEEEEeCC
Q 002299 290 SKRFSCKK-VLIVFDDVTHL-K--QIEFLIGRLDWFASGSRIIITTRD 333 (940)
Q Consensus 290 ~~~l~~~~-~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~iiiTtR~ 333 (940)
.+.+...+ .+||+|+++.. . .++.+..... ..+.+||+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77776554 59999999776 3 2455543333 667788887765
No 67
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.48 E-value=4e-06 Score=84.60 Aligned_cols=178 Identities=16% Similarity=0.193 Sum_probs=94.4
Q ss_pred cchhhhH--HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcccc--ceEEEecchhhhccCCHHHHHHHHHH
Q 002299 195 VGVECRI--KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE--GSYFAHNVREAQETGGLAHLRQQLLS 270 (940)
Q Consensus 195 vGr~~~~--~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (940)
+|-..+. ................+.|+|..|+|||.|.+++++.+.+..+ .++|+.. ..+...+..
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~----------~~f~~~~~~ 81 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA----------EEFIREFAD 81 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH----------HHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH----------HHHHHHHHH
Confidence 5654442 2333333332223445789999999999999999998766543 2455542 122223322
Q ss_pred HhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH---HH-HHHcccCC-CCCCcEEEEEeCChh---------h
Q 002299 271 TLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ---IE-FLIGRLDW-FASGSRIIITTRDKQ---------V 336 (940)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~-~l~~~l~~-~~~gs~iiiTtR~~~---------~ 336 (940)
.+... ....+++.++. -=+|++||++.... |+ .+...+.. ...|.+||+|++... +
T Consensus 82 ~~~~~---------~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRDG---------EIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHTT---------SHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHcc---------cchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 22221 12233344443 23889999965321 21 12111111 135778999996542 1
Q ss_pred hhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 337 LSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 337 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
...+...-.+++++++.++..+++.+.+-..... -.+++++.+++.+.+..-.+..
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHH
Confidence 1222345689999999999999999887433322 2345666777776665544443
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=5.3e-06 Score=91.04 Aligned_cols=191 Identities=14% Similarity=0.098 Sum_probs=108.8
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
....+++|-+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+....... .. ..+.-....++
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-----~~----pc~~c~~c~~~ 82 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-----SN----PCRKCIICKEI 82 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-----CC----CCCCCHHHHHH
Confidence 345688999999999998887542 345678999999999999999998763211000 00 00000000000
Q ss_pred HHH----hhC-CCCCCCchhhhHHHHHhh-----hcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCChh-
Q 002299 269 LST----LLD-DRNVKNFPYIILNFQSKR-----FSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDKQ- 335 (940)
Q Consensus 269 ~~~----~~~-~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~~- 335 (940)
... +.. ........++.. .+.+. ..+++-++|+|+++.... ++.++..+....+..++|++|.+..
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred hcCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 000 000 000001111111 11111 123455999999987653 5566655554456667777665432
Q ss_pred hhhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 336 VLSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 336 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
+... ......+++.+++.++..+.+.+.+-.... .-.++.+..|++.++|.|..+
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3222 123368999999999999988876633221 122356778899999988643
No 69
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.47 E-value=4e-07 Score=90.36 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=35.4
Q ss_pred CccchhhhHHHHHHHhhc-CCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 193 DLVGVECRIKEIELLLRT-GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
.||||+.+++++...+.. .....+.+.|+|++|+|||+|+++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 23456889999999999999999999987766
No 70
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=1.2e-07 Score=74.07 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=17.3
Q ss_pred CccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc
Q 002299 818 SLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 818 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
+|++|++++|.+....+..|.++++|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~ 41 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP 41 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC
Confidence 3444444444443332334444444444444444444333
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=6.2e-07 Score=96.04 Aligned_cols=135 Identities=21% Similarity=0.455 Sum_probs=77.7
Q ss_pred CCCCCEEEecCCCCCCcCCCCCcCCccEEecCCC-CCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEec
Q 002299 691 SESLFELRLSGCTSLKRFPKISSCFLKDLDLESC-GIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRIS 769 (940)
Q Consensus 691 l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 769 (940)
+.++..|++++| .+..+|.+. .+|++|.+++| .++.+|..+ .++|+.|++++|..+..+|. +|+.|++.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~LP-~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVLP-NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCCC-CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence 467788888887 567777433 35888888763 555666544 35778888887755554443 46666665
Q ss_pred CCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCc--cccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEE
Q 002299 770 KCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLE--SFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELT 847 (940)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 847 (940)
. .....++.+| ++|+.|.+.++.... .+|. .-.++|++|++++|.... +|..+. .+|+.|+
T Consensus 121 ~-n~~~~L~~LP-----------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ 183 (426)
T PRK15386 121 G-SATDSIKNVP-----------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPEKLP--ESLQSIT 183 (426)
T ss_pred C-CCCcccccCc-----------chHhheecccccccccccccc--ccCCcccEEEecCCCccc-Cccccc--ccCcEEE
Confidence 4 2333334444 456666664432111 1111 011467888888777553 443332 4777777
Q ss_pred ccCCC
Q 002299 848 VEGTA 852 (940)
Q Consensus 848 L~~n~ 852 (940)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 77654
No 72
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.45 E-value=2.4e-06 Score=87.61 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=97.2
Q ss_pred CCCcc-chhhh-HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 191 NKDLV-GVECR-IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 191 ~~~~v-Gr~~~-~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
.++|+ |...+ +..+.++.. +....+.+.|+|..|+|||+||+.+++.....-....++...... ..+
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~----------~~~ 85 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL----------LAF 85 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH----------HHH
Confidence 34555 54433 344455444 223345688999999999999999998764433344555432100 000
Q ss_pred HHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--HHHHHHcccCCC-CCCc-EEEEEeCChhhhh------
Q 002299 269 LSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWF-ASGS-RIIITTRDKQVLS------ 338 (940)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~-~~gs-~iiiTtR~~~~~~------ 338 (940)
... ...-+||+||++... ..+.+...+... ..+. .||+|++......
T Consensus 86 ----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 86 ----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 001 123378999996542 222222222111 2333 4667766432111
Q ss_pred --hCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhh
Q 002299 339 --NCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFL 399 (940)
Q Consensus 339 --~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 399 (940)
.+.....++++++++++-..++.+.+-... ..-.++..+.+++.+.|.+..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 122236889999999987777766442211 22234677888888999998877665544
No 73
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=1.3e-06 Score=80.33 Aligned_cols=119 Identities=18% Similarity=0.125 Sum_probs=77.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
+++.|.|+.|+||||++++++++.. .-..++|+....... .... .. +..+.+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~-----~~~~---------------~~-~~~~~~~~~~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD-----RRLA---------------DP-DLLEYFLELIKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH-----HHHh---------------hh-hhHHHHHHhhcc
Confidence 5789999999999999999998765 334455554321110 0000 00 012233333334
Q ss_pred CceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhhhh------CCCCcEEEcCCCCHHHH
Q 002299 296 KKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVLSN------CRVDQIYDVKELVDVDA 356 (940)
Q Consensus 296 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~------~~~~~~~~l~~L~~~ea 356 (940)
++.++++|++.....|......+....+..+|++|+........ .+....+++.||+-.|-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 67899999999888887776665555567899999997765532 12335689999988763
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.2e-05 Score=88.88 Aligned_cols=193 Identities=14% Similarity=0.068 Sum_probs=111.9
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh--ccccceEEEecchhhhc---cCCHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS--KHFEGSYFAHNVREAQE---TGGLAH 263 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~---~~~~~~ 263 (940)
..-++++|-+..++.|..++..+. -...+.++|++|+||||+|+.+++.+. +.++..+|.+....... ..++..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 344678999998889988887543 245568999999999999999998763 22333344322110000 000000
Q ss_pred HHHHHHHHhhCC-CCCCCchhhhHHHHHh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCC-hhhhh
Q 002299 264 LRQQLLSTLLDD-RNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRD-KQVLS 338 (940)
Q Consensus 264 l~~~l~~~~~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~-~~~~~ 338 (940)
+... ........++.+.+.. -..+++-++|+|+++... .++.++..+....+...+|++|.. ..+..
T Consensus 90 --------l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 90 --------IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred --------ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 0000 0001111111111111 123455689999997653 466666665544455566655543 33322
Q ss_pred hC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 339 NC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 339 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
.. .....+++.+++.++..+.+.+.+-..... ...+.+..|++.++|.+--+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 22 234689999999999999998877433221 13456788999999988654
No 75
>PRK05642 DNA replication initiation factor; Validated
Probab=98.44 E-value=6.9e-06 Score=84.00 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=89.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
..+.|+|..|+|||.|++++++.+..+-..++|+... + +... ...+.+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~-~---------~~~~------------------~~~~~~~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA-E---------LLDR------------------GPELLDNLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH-H---------HHhh------------------hHHHHHhhhh
Confidence 5688999999999999999998776554456666531 1 1110 0111222222
Q ss_pred CceEEEEeCCCCh---HHHHH-HHcccCC-CCCCcEEEEEeCChhh---------hhhCCCCcEEEcCCCCHHHHHHHHH
Q 002299 296 KKVLIVFDDVTHL---KQIEF-LIGRLDW-FASGSRIIITTRDKQV---------LSNCRVDQIYDVKELVDVDALKLFS 361 (940)
Q Consensus 296 ~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iiiTtR~~~~---------~~~~~~~~~~~l~~L~~~ea~~Lf~ 361 (940)
-. +||+||+... ..|+. +...+.. ...|..||+|++...- ...+....++++++++.++-.+.+.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 7889999532 23322 3222221 1346788998875321 1112334678999999999999998
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHh
Q 002299 362 RCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLG 396 (940)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 396 (940)
+++..... .-.+++...|++.+.|-.-.+..+-
T Consensus 177 ~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 177 LRASRRGL--HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 66643221 1224667778888877765555443
No 76
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.44 E-value=6.3e-06 Score=84.44 Aligned_cols=163 Identities=16% Similarity=0.166 Sum_probs=94.4
Q ss_pred hHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCC
Q 002299 200 RIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVK 279 (940)
Q Consensus 200 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 279 (940)
.+..+.++... ...+.+.|+|+.|+|||+|++++++.....-..+.|+... ... .. ...
T Consensus 32 a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~-~~~--~~----~~~------------ 90 (235)
T PRK08084 32 LLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD-KRA--WF----VPE------------ 90 (235)
T ss_pred HHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH-HHh--hh----hHH------------
Confidence 34444554432 2335789999999999999999999776554445565431 100 00 000
Q ss_pred CchhhhHHHHHhhhcCCceEEEEeCCCCh---HHHHH-HHcccCCC-CCC-cEEEEEeCChh---------hhhhCCCCc
Q 002299 280 NFPYIILNFQSKRFSCKKVLIVFDDVTHL---KQIEF-LIGRLDWF-ASG-SRIIITTRDKQ---------VLSNCRVDQ 344 (940)
Q Consensus 280 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~-l~~~l~~~-~~g-s~iiiTtR~~~---------~~~~~~~~~ 344 (940)
..+.+. +--+|++||++.. .+|+. +...+... ..| .++|+||+... +...+....
T Consensus 91 -----~~~~~~-----~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~ 160 (235)
T PRK08084 91 -----VLEGME-----QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ 160 (235)
T ss_pred -----HHHHhh-----hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc
Confidence 111111 1138899999653 23322 11111111 123 47999998542 222334557
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 345 IYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
+++++++++++-.+.+.+++.... -.-.+++...|++.+.|..-++..+
T Consensus 161 ~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 899999999999999987664322 2223567778888888776555443
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.3e-06 Score=93.87 Aligned_cols=193 Identities=15% Similarity=0.099 Sum_probs=111.0
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
.....+||.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+.-... ... . ..+.-...+.+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~~-~----pCg~C~sC~~I 81 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VTS-T----PCEVCATCKAV 81 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CCC-C----CCccCHHHHHH
Confidence 345689999999999999987543 2467789999999999999999986532110 000 0 00000000000
Q ss_pred HHH----hhC-CCCCCCchhhhHHHHHh----hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCChhh-
Q 002299 269 LST----LLD-DRNVKNFPYIILNFQSK----RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDKQV- 336 (940)
Q Consensus 269 ~~~----~~~-~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~~- 336 (940)
... +.. ........++..+.+.. ...+++-++|+|+++... ..+.++..+.....+.++|++|.+..-
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 000 000 00000111122111111 123455689999998754 455666555544566778877765432
Q ss_pred hhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 337 LSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 337 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
... ......+++.+++.++..+.+.+.+-.... ....+....|++.++|.+..+.
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 111 233468999999999999998877643222 2234567789999999775443
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=98.41 E-value=2.2e-06 Score=92.50 Aligned_cols=183 Identities=15% Similarity=0.235 Sum_probs=105.2
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh-ccccceEEEecchhhhccCCHHHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS-KHFEGSYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (940)
|..-.+++|.+..++.|..++..+ ..+.+.++|++|+||||+|+.+++.+. ..|...+.-.+. +...+.. ..+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~~~~-~vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDRGID-VVR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---cccccHH-HHH
Confidence 344567899998888888887643 334477999999999999999999763 333322211111 1111221 122
Q ss_pred HHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCCh-hhhhhC-CC
Q 002299 267 QLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDK-QVLSNC-RV 342 (940)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~-~~ 342 (940)
............ ...++.-++|+|+++.... .+.+...+......+++++++... .+.... ..
T Consensus 83 ~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 222211111000 0013455999999976533 333433333335567777766543 222111 12
Q ss_pred CcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhh
Q 002299 343 DQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLA 391 (940)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (940)
...+++++++.++..+.+.+.+-..... -..+....|++.++|-.-.
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3578999999999999888776432221 1245677888888887643
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.5e-06 Score=97.38 Aligned_cols=198 Identities=13% Similarity=0.062 Sum_probs=111.7
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-c-cc-eEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-F-EG-SYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f-~~-~~~~~~~~~~~~~~~~~~l~ 265 (940)
....++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+... . .. .|..+.............+
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv- 90 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL- 90 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE-
Confidence 345689999999999999887532 23456899999999999999999876432 1 00 0111000000000000000
Q ss_pred HHHHHHhhCC-CCCCCchhhhHHHHHh-hhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCCh-hhhhh-
Q 002299 266 QQLLSTLLDD-RNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDK-QVLSN- 339 (940)
Q Consensus 266 ~~l~~~~~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~- 339 (940)
..+... .........+.+.+.. ...+++-++|||+++.. +..+.|+..+-......++|++|.+. .+...
T Consensus 91 ----iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 91 ----IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred ----EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHH
Confidence 000000 0000111111111111 12356679999999765 34666666655445666766665544 33322
Q ss_pred CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 340 CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 340 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
......|++.+++.++..+++.+.+-... .....+.+..|++.++|.|-.+..
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 12336899999999999999987663321 222345678899999998864443
No 80
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.38 E-value=1.9e-06 Score=95.01 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=100.4
Q ss_pred CCCCccchhhhHHHHHHHhhcC-----------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhcc
Q 002299 190 DNKDLVGVECRIKEIELLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQET 258 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (940)
...++.|++..++++.+.+... -...+-+.|+|++|+|||++|+++++.....|- ....
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~-----~v~~----- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI-----RVVG----- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEE-----ecch-----
Confidence 3457899999999998766421 122455899999999999999999997755432 1110
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----------------HHHHHHcccCCC-
Q 002299 259 GGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----------------QIEFLIGRLDWF- 321 (940)
Q Consensus 259 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~- 321 (940)
..+....... ........+...-...+.+|++|+++... .+..+...+...
T Consensus 190 ---~~l~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 ---SELVRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---HHHHHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 0111111000 00011111222223467899999986531 133333332221
Q ss_pred -CCCcEEEEEeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh
Q 002299 322 -ASGSRIIITTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 322 -~~gs~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 389 (940)
..+.+||.||....... ....+..+.++..+.++..++|..++.+...... .....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 24667888887543221 1133567899999999999999988754332221 11355666776653
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=7.2e-09 Score=107.30 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=49.3
Q ss_pred CCceEEEcCCCCCCcccc--CccCCCCCccEEeeeCCCCCCC--CCccCCCCCCCCEEEccCCCCccCchhHHHhhhccC
Q 002299 793 QALSKLELNNCSRLESFP--SSLCMFESLASLKIIDCPRLDG--LPDELGNLKALEELTVEGTAMREVPESLGQLLESLP 868 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp 868 (940)
.+|+.|.+++|+..+... ..-.+.+.|+.+++..|..... +...-.+++.|+.|.|++|.... ..+ +..+.
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it-D~g----i~~l~ 394 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT-DEG----IRHLS 394 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh-hhh----hhhhh
Confidence 455555555554332111 1112445566666555554331 11112345556666666553211 000 11122
Q ss_pred ccccCCCCCCEEeccCCCCCcc-cCCCcCCchhhhhhhccCC
Q 002299 869 SSLYKSKCLQDSYLDDCPNLHR-LPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 869 ~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~l~~n 909 (940)
..-..+..|..|.|++|+.+.. .-..+..+++|+.+++.+|
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 2233455566666666655432 2224445556666555554
No 82
>PRK04195 replication factor C large subunit; Provisional
Probab=98.38 E-value=1.2e-05 Score=91.87 Aligned_cols=181 Identities=16% Similarity=0.173 Sum_probs=108.6
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCC--CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGS--AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
|.....++|.+..++.+..|+.... ...+.+.|+|++|+||||+|+.+++.+. |+.. .+.. +.... ....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~i-elna----sd~r~-~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVI-ELNA----SDQRT-ADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEE-EEcc----ccccc-HHHH
Confidence 4445679999999999999886422 2257799999999999999999999763 2222 2221 11111 1222
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH------HHHHHHcccCCCCCCcEEEEEeCChh-hhh
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK------QIEFLIGRLDWFASGSRIIITTRDKQ-VLS 338 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~ 338 (940)
.++........ .....++-+||+|+++... .+..+...+. ..+..||+|+.+.. ...
T Consensus 82 ~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 82 ERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 22222221111 0011256799999997642 2444443333 23445666664432 111
Q ss_pred -h-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 339 -N-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 339 -~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
. ......+.+.+++.++....+.+.+...... -..+....|++.++|-.-.+..
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 1234678999999999999888776433222 2246678899999987665543
No 83
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.38 E-value=1.6e-05 Score=86.67 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=106.1
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEecchhhhccCCHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
..-.+++|++..++.+..++..+ ..+.+.|+|.+|+||||+|+.+++.+... +.. .++.... ....... ...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~--~~~~~~~-~~~~ 87 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNA--SDERGID-VIRN 87 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEecc--ccccchH-HHHH
Confidence 34467899999999999998653 33457999999999999999999876332 221 1221100 0111111 1111
Q ss_pred HHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCChh-hhhh-CCCC
Q 002299 268 LLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDKQ-VLSN-CRVD 343 (940)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~-~~~~ 343 (940)
.+........ .....+-++++|+++... ..+.+...+....+.+++|+++.... +... ....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001234589999987543 24444444444455677777764321 1111 1123
Q ss_pred cEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 344 QIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
..+++++++.++....+...+..... .-.++.+..+++.++|.+.-+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 46899999999999988887643322 1224567888999999876543
No 84
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=2.7e-07 Score=72.07 Aligned_cols=61 Identities=25% Similarity=0.318 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAM 853 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l 853 (940)
|+|++|++++|.+....+..|..+++|++|++++|.+....|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688888888866655556888999999999999998876677889999999999999864
No 85
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=7.5e-06 Score=88.23 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=108.4
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc------cccceEEEecchhhhccCCHHHHH
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK------HFEGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
.+++|-+..++.+.+.+..+. -.+...++|+.|+||||+|+.+++.+-. +.+...|.. .. .....+..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~--~~~i~v~~i- 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN--KKSIGVDDI- 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc--CCCCCHHHH-
Confidence 467898888899999886542 3457789999999999999999986522 223223321 00 111122221
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCC--ChHHHHHHHcccCCCCCCcEEEEEeCChhhh-hh-CC
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVT--HLKQIEFLIGRLDWFASGSRIIITTRDKQVL-SN-CR 341 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~-~~-~~ 341 (940)
+.+...+.. ....+++=++|+|+++ +.+.++.++..+....+++.+|++|.+.+.. .. ..
T Consensus 79 r~~~~~~~~----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNK----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhc----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 122221111 0112344466777764 4455777877777667788888888765432 21 12
Q ss_pred CCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 342 VDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
....+.+.+++.++....+.+...+ ...+.++.++.+++|.|..+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 3468999999999998888665411 1123466788999998876543
No 86
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.37 E-value=2.5e-06 Score=89.07 Aligned_cols=143 Identities=20% Similarity=0.346 Sum_probs=97.4
Q ss_pred CCCcccEEEcCcccccCCcchHHHHHHHHhCCCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCccc--------
Q 002299 18 RKNKYDVFLSFRGEDTRGNFTSHLFSALSKKHIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYAS-------- 88 (940)
Q Consensus 18 ~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~-------- 88 (940)
.....|||||||..- +...++-+.-.|.-+|++||||- .+..|. +.+.+.+.|+.++-.|.|++||-.+
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 456799999997754 35688888888899999999997 677775 6779999999999999999996543
Q ss_pred hhhhHHHHHHHHHhhccCCCEEEEEEcccCCcchhhcccchhHHHHHHhhcchhHHHHHHHHHHHHhhccCCCCCCCCch
Q 002299 89 SKWCLDELLKIIDCKNNSGQMVIPVFYRVDPSHVRKQIGSFGDSISNLEERFPEKMQRWRNALTEAANLSGFDSHVTRPE 168 (940)
Q Consensus 89 s~~cl~El~~~~~~~~~~~~~v~pvf~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~g~~~~~~~~~ 168 (940)
..|.-.|++-+++|. ..++|||-..-. |..-+...+. -+..+....|.... ..++
T Consensus 687 eDWVHKEl~~Afe~~----KNIiPI~D~aFE-------------~Pt~ed~iPn-------Dirmi~kyNGvKWv-HdYQ 741 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQ----KNIIPIFDTAFE-------------FPTKEDQIPN-------DIRMITKYNGVKWV-HDYQ 741 (832)
T ss_pred HHHHHHHHHHHHHhc----CCeeeeeccccc-------------CCCchhcCcH-------HHHHHHhccCeeee-hhhH
Confidence 457777888787764 468999854210 0000000111 11123334444333 5677
Q ss_pred hHHHHHHHHhhhhccCccc
Q 002299 169 SKLIEEIVGEVLKRLDDTF 187 (940)
Q Consensus 169 ~~~~~~i~~~~~~~l~~~~ 187 (940)
...+.+++.-+..+++.+.
T Consensus 742 dA~maKvvRFitGe~nRtt 760 (832)
T KOG3678|consen 742 DACMAKVVRFITGELNRTT 760 (832)
T ss_pred HHHHHHHHHHHhccccCCC
Confidence 7788888887777766543
No 87
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.36 E-value=4.1e-06 Score=79.51 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=70.0
Q ss_pred cchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhC
Q 002299 195 VGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLD 274 (940)
Q Consensus 195 vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 274 (940)
+|++..+..+...+... ..+.+.|+|++|+|||++|+++++.+...-..++++.... ..... .. .......
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~-~~~~~---~~-~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD-LLEGL---VV-AELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh-hhhhh---HH-HHHhhhh--
Confidence 47888888888887643 3457889999999999999999997754434455554321 11100 00 0000000
Q ss_pred CCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh--HH---HHHHHcccCCC---CCCcEEEEEeCChh
Q 002299 275 DRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL--KQ---IEFLIGRLDWF---ASGSRIIITTRDKQ 335 (940)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~---~~~l~~~l~~~---~~gs~iiiTtR~~~ 335 (940)
............++.++|+||++.. .. +.......... ..+..||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222346789999999864 22 33333332221 36778888888653
No 88
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=6.5e-06 Score=92.90 Aligned_cols=197 Identities=14% Similarity=0.110 Sum_probs=110.6
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc-cceEEEecchhhhccCCHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF-EGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
...+++||-+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+...- +..--+. ....+.-.....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~ 86 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTE 86 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHH
Confidence 345689999999999999987543 245678999999999999999998653210 0000000 000000000000
Q ss_pred HHHH----hhC-CCCCCCchhhhHHHHHhh----hcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCC-hh
Q 002299 268 LLST----LLD-DRNVKNFPYIILNFQSKR----FSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRD-KQ 335 (940)
Q Consensus 268 l~~~----~~~-~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~-~~ 335 (940)
+... +.. +.......++..+.+... ..++.-++|+|+++... ..+.|+..+.....+.++|++|.+ ..
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 0000 000 000011122222222211 23455699999998754 466777666554566666555554 44
Q ss_pred hhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 336 VLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 336 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
+.... .....+.+..++.++..+.+.+.+..... ....+..+.|++.++|.|....
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 43222 22367899999999999988877633221 1223456788999999986543
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=8.5e-06 Score=92.29 Aligned_cols=177 Identities=16% Similarity=0.104 Sum_probs=106.4
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc---------------------ccceE
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH---------------------FEGSY 247 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~ 247 (940)
..-.++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+... |...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 345678999999999998886532 34557899999999999999999865321 11111
Q ss_pred EEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCC
Q 002299 248 FAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASG 324 (940)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g 324 (940)
++... ...++. ....+.+.+.. ...+++-++|+|+++... ..+.++..+......
T Consensus 92 eidaa----s~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 92 EIDAA----SRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred Eeecc----cccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 11100 001111 11112222211 123456699999997644 366666665544556
Q ss_pred cEEEEEeCC-hhhhhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChh
Q 002299 325 SRIIITTRD-KQVLSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPL 390 (940)
Q Consensus 325 s~iiiTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (940)
+.+|++|.+ ..+... ......+++.+++.++..+.+.+.+-..+ ....++....|++.++|-+-
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 666654443 333322 22347899999999998888877553222 12234556788889998664
No 90
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=3.4e-05 Score=86.64 Aligned_cols=185 Identities=19% Similarity=0.167 Sum_probs=105.8
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc----cc-----------------ce
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH----FE-----------------GS 246 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----f~-----------------~~ 246 (940)
|..-+.+||.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3445689999988888888776432 23457899999999999999999865321 00 11
Q ss_pred EEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHH-hhhcCCceEEEEeCCCChH--HHHHHHcccCCCCC
Q 002299 247 YFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQS-KRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFAS 323 (940)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~ 323 (940)
..+.. ....++..+ +++ .+... ....+++-++|+|+++... ..+.++..+....+
T Consensus 89 ~el~a----a~~~gid~i-R~i-----------------~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 89 IELDA----ASNRGIDEI-RKI-----------------RDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred EEEeC----cccCCHHHH-HHH-----------------HHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 11110 000111111 111 11111 1123456699999997653 35555555443334
Q ss_pred CcEEEEEeCC-hhhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC-hhhHHHHhh
Q 002299 324 GSRIIITTRD-KQVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV-PLALKVLGS 397 (940)
Q Consensus 324 gs~iiiTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~~ 397 (940)
...+|++|.+ ..+.... .....+++.+++.++....+.+.+..... .-.++....|++.++|- +.|+..+-.
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444444443 3332222 23468899999999999988887643221 12245677788877654 566555544
No 91
>PRK09087 hypothetical protein; Validated
Probab=98.31 E-value=1.6e-05 Score=80.47 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=85.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
.+.+.|+|+.|+|||+|++.++.... ..|+... .+....... + .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~~----------~~~~~~~~~-----------------~----~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHPN----------EIGSDAANA-----------------A----A 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecHH----------HcchHHHHh-----------------h----h
Confidence 35689999999999999999887532 2244321 011111110 0 0
Q ss_pred CCceEEEEeCCCCh----HHHHHHHcccCCCCCCcEEEEEeCCh---------hhhhhCCCCcEEEcCCCCHHHHHHHHH
Q 002299 295 CKKVLIVFDDVTHL----KQIEFLIGRLDWFASGSRIIITTRDK---------QVLSNCRVDQIYDVKELVDVDALKLFS 361 (940)
Q Consensus 295 ~~~~LlVlDdv~~~----~~~~~l~~~l~~~~~gs~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 361 (940)
.-+|++||++.. +.+-.+...+. ..|..||+|++.. .....+....++++++++.++-.+++.
T Consensus 88 --~~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 --EGPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred --cCeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 127888999542 22222222222 3467899998742 233334456789999999999999999
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 362 RCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
+++-... -.-.+++...|++.+.|..-++..+
T Consensus 164 ~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQ--LYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 8874322 2223567788888888877666643
No 92
>PF14516 AAA_35: AAA-like domain
Probab=98.29 E-value=0.00028 Score=76.26 Aligned_cols=207 Identities=9% Similarity=0.078 Sum_probs=117.0
Q ss_pred cCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhh-ccCCHHHHH
Q 002299 187 FQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQ-ETGGLAHLR 265 (940)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~l~ 265 (940)
.+.+.+..|+|...-+++.+.+... -..+.|.|+-.+|||+|..++.+...+.=-.+++++.-.-.. .........
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 3456677889996666666665431 246899999999999999999987765423344554322111 122344444
Q ss_pred HHHHHHhhCCCC-----------CCCchhhhHHHHHhhh---cCCceEEEEeCCCChHH----HHHHHcccCC-------
Q 002299 266 QQLLSTLLDDRN-----------VKNFPYIILNFQSKRF---SCKKVLIVFDDVTHLKQ----IEFLIGRLDW------- 320 (940)
Q Consensus 266 ~~l~~~~~~~~~-----------~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~----~~~l~~~l~~------- 320 (940)
+.+...+...-. ...........+.+.+ .+++++|++|+|+..-. .+.+.+.+..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 444333322111 0111122233343332 25899999999975322 1222221110
Q ss_pred CC-CCc--EEEEEeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 321 FA-SGS--RIIITTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 321 ~~-~gs--~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
.. ... -|++.+....... .......+++++++.+|...|..++-.. ......++|...+||+|.-+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHH
Confidence 00 111 1222221111111 1234467899999999999999876421 11223889999999999999
Q ss_pred HHHhhhhcCC
Q 002299 393 KVLGSFLSGR 402 (940)
Q Consensus 393 ~~~~~~l~~~ 402 (940)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999998654
No 93
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3e-05 Score=85.45 Aligned_cols=192 Identities=15% Similarity=0.070 Sum_probs=109.2
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcccc-c--eEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE-G--SYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-~--~~~~~~~~~~~~~~~~~~l~ 265 (940)
....++||-+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+..... . .+..+. .-..+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--------sC~~i~ 85 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--------SCLEIT 85 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--------HHHHHH
Confidence 345678999999999998887543 2345789999999999999999986533211 0 011100 000110
Q ss_pred HHHHHHhhC----CCCCCCchhhhHHHHHh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeC-Chhhh
Q 002299 266 QQLLSTLLD----DRNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTR-DKQVL 337 (940)
Q Consensus 266 ~~l~~~~~~----~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR-~~~~~ 337 (940)
......+.. .....+...++.+.+.. ...++.-++|+|+++... .++.++..+........+|++|. ...+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 000000000 00001111122222221 123456699999997654 46777666554344555554444 34333
Q ss_pred hhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhh
Q 002299 338 SNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLA 391 (940)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (940)
... .....|.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+.-
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHH
Confidence 222 23367999999999999988877643221 22345678899999999854
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.29 E-value=7.3e-05 Score=88.16 Aligned_cols=172 Identities=22% Similarity=0.313 Sum_probs=99.5
Q ss_pred CCCCCccchhhhHH---HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRIK---EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~~---~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
...++|+|.+..+. .+.+++.. +....+.|+|++|+||||+|+.+++.....|. .+... ..++..+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di- 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL- 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH-
Confidence 34467899888774 46666654 34556789999999999999999987765542 12111 0111111
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhh--hcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEE--eCChh--hh
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKR--FSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIIT--TRDKQ--VL 337 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiT--tR~~~--~~ 337 (940)
++. .....+. ..+++.+||+|+++.. .+.+.+...+ ..|..++|+ |.+.. +.
T Consensus 94 r~~-----------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 94 RAE-----------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred HHH-----------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 111 1111111 1235679999999753 4455565443 235555553 33321 11
Q ss_pred hh-CCCCcEEEcCCCCHHHHHHHHHHhhcC-----CCCCCchhhHHHHHHHHHhcCChhh
Q 002299 338 SN-CRVDQIYDVKELVDVDALKLFSRCAFG-----EDDPTASYTKLTHEAVKYAKGVPLA 391 (940)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~-----~~~~~~~~~~~~~~i~~~~~g~PLa 391 (940)
.. ......+.+++++.++...++.+.+-. +.....-.++....|++.+.|..-.
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 11 122357899999999999999876531 0111222345677888888886543
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.28 E-value=2.9e-05 Score=85.95 Aligned_cols=183 Identities=17% Similarity=0.129 Sum_probs=109.6
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc----cc-----------------ceE
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH----FE-----------------GSY 247 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----f~-----------------~~~ 247 (940)
..-..++|.+..++.+.+++..+. -.+.+.++|++|+||||+|+.++..+... +. ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344678999999999999886542 24567899999999999999999875321 10 011
Q ss_pred EEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHh-hhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 002299 248 FAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASG 324 (940)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g 324 (940)
++... ...... ..+++ .+.+.. -..+++-++|+|+++.. ...+.+...+....+.
T Consensus 90 ~~~~~----~~~~~~-~~~~l-----------------~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 90 EIDAA----SNNGVD-DIREI-----------------LDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred Eeecc----ccCCHH-HHHHH-----------------HHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 11110 000000 01111 111111 12234558899998765 3455665555444456
Q ss_pred cEEEEEeCChh-hhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHh
Q 002299 325 SRIIITTRDKQ-VLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLG 396 (940)
Q Consensus 325 s~iiiTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 396 (940)
+.+|++|.+.. +.... .....+++.+++.++..+.+...+-..... -.++.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHH
Confidence 66666665443 22221 233578899999999999888776432221 123567788999999987665443
No 96
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=1.2e-07 Score=106.71 Aligned_cols=198 Identities=23% Similarity=0.202 Sum_probs=106.2
Q ss_pred cccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEE
Q 002299 619 QNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELR 698 (940)
Q Consensus 619 ~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~ 698 (940)
..+..++.+++..|.+......++.+.+|..|++.+|. +..+...+..+++|++|++++|.+. .+...-.++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L- 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKEL- 145 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccccc-cccchhhccchhhh-
Confidence 34667777778888655545558889999999999874 4444444778888999999888543 33322233334444
Q ss_pred ecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccc-cccCCCCCCcEEEecCCCCCCcC
Q 002299 699 LSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIA-SSIFTLKSLESIRISKCSNLRKF 777 (940)
Q Consensus 699 l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~ 777 (940)
++++|.|+.++. +..+++|+.+++++|.+...-+ . +..+.+|+.+.+.+|.....-
T Consensus 146 ---------------------~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 146 ---------------------NLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred ---------------------eeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 444555544432 3335555555555554443322 1 344555566666554332111
Q ss_pred CCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCC--CccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCcc
Q 002299 778 PEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFE--SLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMRE 855 (940)
Q Consensus 778 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 855 (940)
.+... ..+..+++..|.+...-+ +..+. +|+.+++++|++.. .+..+..+..+..|++.+|.+..
T Consensus 203 -----~~~~~-----~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 203 -----GLDLL-----KKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred -----chHHH-----HHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc
Confidence 11111 223333444443332211 11122 26666666666554 22445556666666666666543
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=7.1e-05 Score=83.64 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=108.7
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc---------------------cccceE
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK---------------------HFEGSY 247 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---------------------~f~~~~ 247 (940)
....++||-+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+.- .+..++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 345688999999999988886542 2346889999999999999999985421 111222
Q ss_pred EEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCC
Q 002299 248 FAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASG 324 (940)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~g 324 (940)
.++.. ...++..+ +.+. +.... -..+++=++|+|+++... ..+.++..+....+.
T Consensus 89 eidaa----s~~~vddI-R~Ii-----------------e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 89 EIDAA----SNTSVDDI-KVIL-----------------ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEecc----cCCCHHHH-HHHH-----------------HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 22211 01111111 1111 11110 112345589999997643 356666655555566
Q ss_pred cEEEEEeCC-hhhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 325 SRIIITTRD-KQVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 325 s~iiiTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
.++|++|.. ..+.... .....+++.+++.++..+.+.+.+..... .-.++....|++.++|.+..+
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 777666543 3333322 23467899999999999999887743322 222455778899999887543
No 98
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1e-05 Score=92.53 Aligned_cols=193 Identities=18% Similarity=0.097 Sum_probs=108.2
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
....++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-... +..+. .-...+.+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~pCg--------~C~sCr~i 82 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEPCG--------VCQSCTQI 82 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCCCc--------ccHHHHHH
Confidence 345689999999999999987542 245688999999999999999998653211000 00000 00000000
Q ss_pred HHH----hh-CCCCCCCchhhhHHHHHh----hhcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCChh-h
Q 002299 269 LST----LL-DDRNVKNFPYIILNFQSK----RFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDKQ-V 336 (940)
Q Consensus 269 ~~~----~~-~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~~-~ 336 (940)
... +. -........+.+.+.+.. -..+++-++|+|+++.... ...++..+.......++|++|.+.. +
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 000 00 000000111112122111 1234556999999977543 4455555443345667777765442 2
Q ss_pred hhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 337 LSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 337 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
... .+....+.+.+++.++..+.+.+.+-.... .-..+....|++.++|.+.-+.
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHH
Confidence 211 122356788899999999998877643222 2234567889999999885443
No 99
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.9e-05 Score=83.14 Aligned_cols=191 Identities=15% Similarity=0.165 Sum_probs=116.8
Q ss_pred CCCCccchhhhHHHHHHHhhcC--CCCeeEEEEEecCCchhhHHHHHHHHHhhccccc--eEEEecchhhhccCCHHHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTG--SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEG--SYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 265 (940)
.++.+.+|+.+++++...|... ...+.-+.|+|.+|.|||+.++.+++++...... ++++.+ ........+.
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc----~~~~t~~~i~ 90 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC----LELRTPYQVL 90 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee----eeCCCHHHHH
Confidence 3455999999999998877542 1223348899999999999999999988766433 467765 2334556677
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhhhc--CCceEEEEeCCCChHH-----HHHHHcccCCCCCCcEEE--EEeCChhh
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKRFS--CKKVLIVFDDVTHLKQ-----IEFLIGRLDWFASGSRII--ITTRDKQV 336 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~ii--iTtR~~~~ 336 (940)
.+++..+...........+..+.+.+.+. ++.+++|||+++.... +-.+..... ...++|+ ..+-+...
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~--~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG--ENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc--ccceeEEEEEEeccHHH
Confidence 77777765333333344455556666553 4788999999965432 222222211 1144443 33333222
Q ss_pred hh--------hCCCCcEEEcCCCCHHHHHHHHHHhh---cCCCCCCchhhHHHHHHHHHhcC
Q 002299 337 LS--------NCRVDQIYDVKELVDVDALKLFSRCA---FGEDDPTASYTKLTHEAVKYAKG 387 (940)
Q Consensus 337 ~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~---~~~~~~~~~~~~~~~~i~~~~~g 387 (940)
.. ..+. ..+..++-+.+|-.+.+..++ |......+..-+++..++.+-+|
T Consensus 169 ~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 169 LDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred HHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 11 1222 347788999999999888775 33444444444555555555554
No 100
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.5e-06 Score=102.34 Aligned_cols=105 Identities=26% Similarity=0.309 Sum_probs=58.0
Q ss_pred ccEEecCCCCCc-ccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 716 LKDLDLESCGIE-ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 716 L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
++.|+|++|.++ .+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdL-------------------------- 473 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL-------------------------- 473 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC--------------------------
Confidence 455555555555 44555555555555555555555555554555555555554
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCC-CCCCEEEccCCC
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNL-KALEELTVEGTA 852 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~L~~n~ 852 (940)
++|.+...+|..+..+++|+.|+|++|.+.+.+|..+..+ .++..+++.+|.
T Consensus 474 ------s~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 474 ------SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ------CCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 4444444555555666666666666666666666555432 345556666654
No 101
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.1e-05 Score=84.98 Aligned_cols=196 Identities=18% Similarity=0.149 Sum_probs=113.0
Q ss_pred cCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc----ccceEEEecchhhhccCCHH
Q 002299 187 FQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH----FEGSYFAHNVREAQETGGLA 262 (940)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 262 (940)
.|.....++|-+...+.+...+..+. ....+.|+|+.|+||||+|+.+++.+-.. +...... . ..+..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-~------~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-D------PDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-C------CCCCC
Confidence 35566789999999999999887543 34568899999999999999999976431 1111000 0 00001
Q ss_pred HHHHHHHHH-------hhC---CCC----CCCchhhhHHHHHhhh-----cCCceEEEEeCCCChHH--HHHHHcccCCC
Q 002299 263 HLRQQLLST-------LLD---DRN----VKNFPYIILNFQSKRF-----SCKKVLIVFDDVTHLKQ--IEFLIGRLDWF 321 (940)
Q Consensus 263 ~l~~~l~~~-------~~~---~~~----~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~l~~~l~~~ 321 (940)
...+.+... +.. ... .....++. +.+.+.+ .+++-++|+|+++.... .+.++..+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 111222111 000 000 01112222 2233332 34566999999976543 45555444433
Q ss_pred CCCcEEE-EEeCChhhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 322 ASGSRII-ITTRDKQVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 322 ~~gs~ii-iTtR~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
.....+| +|++...+.... .....+.+.+++.++..+++.+...... ..++.+..+++.++|.|.....+
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4455544 444443333322 2236899999999999999987432111 22345678999999999865544
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=3.4e-05 Score=84.49 Aligned_cols=187 Identities=14% Similarity=0.109 Sum_probs=104.5
Q ss_pred CCccchhhhHHHHHHHhhcCCC--------CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHH
Q 002299 192 KDLVGVECRIKEIELLLRTGSA--------GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAH 263 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~--------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 263 (940)
++++|-+..++.|.+++..+.. -.+.+.++|+.|+|||++|+.++..+--.... .-.+ +.-.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~C--------g~C~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGC--------GECR 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCC--------CCCH
Confidence 4688999889999988876431 24568899999999999999999864221110 0000 0000
Q ss_pred HHHHHHHHh------hCCCCCCCchhhhHHHHH---h-hhcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEe
Q 002299 264 LRQQLLSTL------LDDRNVKNFPYIILNFQS---K-RFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITT 331 (940)
Q Consensus 264 l~~~l~~~~------~~~~~~~~~~~~~~~~l~---~-~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTt 331 (940)
..+.+.... ..........+++.+.+. . -..+++-++|+|+++.... ...++..+....++..+|++|
T Consensus 75 ~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 75 ACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 000000000 000000011111111111 1 1123445888899977543 444555554445667666666
Q ss_pred CCh-hhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 332 RDK-QVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 332 R~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
.+. .+.... .....+.+.+++.++..+.+.+.. + . ..+.+..++..++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 654 333332 234689999999999998887432 1 1 1345678899999999755443
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=2.6e-05 Score=87.46 Aligned_cols=165 Identities=13% Similarity=0.173 Sum_probs=97.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccc--cceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHF--EGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF 293 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 293 (940)
.-+.|+|..|+|||+|++++++.+.... ..++++.. ..+...+...+.... ...+.+.+.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~----------~~f~~~~~~~l~~~~-------~~~~~~~~~~ 204 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG----------DEFARKAVDILQKTH-------KEIEQFKNEI 204 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHHhh-------hHHHHHHHHh
Confidence 4588999999999999999999765432 23344432 122333333222110 1122333333
Q ss_pred cCCceEEEEeCCCChH---H-HHHHHcccCCC-CCCcEEEEEeCChh---------hhhhCCCCcEEEcCCCCHHHHHHH
Q 002299 294 SCKKVLIVFDDVTHLK---Q-IEFLIGRLDWF-ASGSRIIITTRDKQ---------VLSNCRVDQIYDVKELVDVDALKL 359 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~~---~-~~~l~~~l~~~-~~gs~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L 359 (940)
+ ..-+||+||+.... . .+.+...+... ..|..||+|+.... +...+...-.+.+++++.++..++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 3 33488999995432 1 23332222211 34557888876431 122233456788999999999999
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhh
Q 002299 360 FSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSF 398 (940)
Q Consensus 360 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 398 (940)
+.+++-.......-.+++...|++.++|.|-.+..+...
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 998874322111234677889999999999887765433
No 104
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.23 E-value=3.3e-06 Score=90.61 Aligned_cols=135 Identities=21% Similarity=0.414 Sum_probs=80.9
Q ss_pred cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEe
Q 002299 641 LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLD 720 (940)
Q Consensus 641 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~ 720 (940)
+..+.++..|++++| .+..+|. -.++|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~----sLe~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE----SVRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc----ccceEE
Confidence 344678888888888 5666662 23468888888887777777544 46788888888876665554 377777
Q ss_pred cCCCCCc---ccCccccccCCCcEEEecCCCCC--cccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 721 LESCGIE---ELPSSIECLYNLRSIDLLNCTRL--EYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 721 L~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
+.++... .+|+ +|+.|.+.+++.. ..+|.. -.++|++|++++|..+...+.+| .+|
T Consensus 119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP-----------~SL 179 (426)
T PRK15386 119 IKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP-----------ESL 179 (426)
T ss_pred eCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc-----------ccC
Confidence 7766543 3443 3556665432211 111110 12467777777776543212233 466
Q ss_pred eEEEcCCC
Q 002299 796 SKLELNNC 803 (940)
Q Consensus 796 ~~L~L~~~ 803 (940)
+.|.++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 77776654
No 105
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.9e-05 Score=91.01 Aligned_cols=194 Identities=14% Similarity=0.074 Sum_probs=110.1
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
....++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-...... ....+.-...+++
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~C~~C~~i 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT---------ATPCGECDNCREI 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC---------CCCCCCCHHHHHH
Confidence 345689999999999998887543 234568999999999999999998653211000 0000000111111
Q ss_pred HHH-------hhCC-CCCCCchhhhHHHHHh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCCh-hh
Q 002299 269 LST-------LLDD-RNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDK-QV 336 (940)
Q Consensus 269 ~~~-------~~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~-~~ 336 (940)
... +... ....+...++.+.+.. -..+++-++|+|+++... ..+.++..+-......++|++|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 100 0000 0001111111111111 124566699999997654 3666655555445566666555544 33
Q ss_pred hhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 337 LSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 337 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
... ......+.+.+++.++..+.+.+.+-.... ....+....|++.++|.+-.+..
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 322 123468999999999999998876532221 12235567899999998864443
No 106
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=4.1e-05 Score=86.32 Aligned_cols=189 Identities=18% Similarity=0.133 Sum_probs=109.3
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcccc-------ceEEEecchhhhccCCH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE-------GSYFAHNVREAQETGGL 261 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~ 261 (940)
..-.++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+...-. ..+..+.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~---------- 86 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT---------- 86 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh----------
Confidence 345678999999999888776532 2356889999999999999999986532110 0011100
Q ss_pred HHHHHHHHHH----hhC-CCCCCCchhhhHHHHHh----hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEE-
Q 002299 262 AHLRQQLLST----LLD-DRNVKNFPYIILNFQSK----RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIII- 329 (940)
Q Consensus 262 ~~l~~~l~~~----~~~-~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iii- 329 (940)
-...+... +.. ........+++.+.+.. -+.+++-++|+|+++... .++.+...+....+...+|+
T Consensus 87 --~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 87 --NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred --HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 00000000 000 00000111222222211 123466689999998743 46666665554455566554
Q ss_pred EeCChhhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 330 TTRDKQVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 330 TtR~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
||+...+.... .....+++.+++.++..+.+.+.+-.... ....+....|++.++|.+.-+
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 55544444332 23367899999999999999888743322 122355677899999987543
No 107
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.20 E-value=5.3e-05 Score=75.07 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=60.7
Q ss_pred CCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCCh-hhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 002299 295 CKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDK-QVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDP 370 (940)
Q Consensus 295 ~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 370 (940)
+.+-++|+|+++... ..+.++..+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 455689999997643 3566666655555667777777654 222221 23368999999999999988776 1 1
Q ss_pred CchhhHHHHHHHHHhcCChhh
Q 002299 371 TASYTKLTHEAVKYAKGVPLA 391 (940)
Q Consensus 371 ~~~~~~~~~~i~~~~~g~PLa 391 (940)
.++.+..+++.++|.|..
T Consensus 170 ---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ---CHHHHHHHHHHcCCCccc
Confidence 135688999999998853
No 108
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.16 E-value=1.2e-05 Score=81.99 Aligned_cols=173 Identities=18% Similarity=0.291 Sum_probs=97.9
Q ss_pred CCCccchhhhHHH---HHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHH
Q 002299 191 NKDLVGVECRIKE---IELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 191 ~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
.+++||.+..+.+ |..++. .+...-+.+||++|+||||||+.++..-+.+- ..||..........+++.+.++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHHHHH
Confidence 3455665544322 333443 35667788999999999999999998654432 3455432222222222222222
Q ss_pred HHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEE--EeCChhhh---hhC
Q 002299 268 LLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIII--TTRDKQVL---SNC 340 (940)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii--TtR~~~~~---~~~ 340 (940)
.- -...+..+|.+|.+|.|..- .|-+.+++. ...|.-++| ||-++... ...
T Consensus 213 aq-------------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 213 AQ-------------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HH-------------------HHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHHHH
Confidence 11 11234568899999999653 344555544 345665555 66665331 112
Q ss_pred CCCcEEEcCCCCHHHHHHHHHHhhc--CC-CC---CCc-----hhhHHHHHHHHHhcCCh
Q 002299 341 RVDQIYDVKELVDVDALKLFSRCAF--GE-DD---PTA-----SYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~~~--~~-~~---~~~-----~~~~~~~~i~~~~~g~P 389 (940)
....++.++.|..++...++.+..- ++ .. +-+ -...+.+-++..|.|-.
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 3447899999999999998887321 11 11 111 12345566666777754
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3.8e-05 Score=87.14 Aligned_cols=190 Identities=16% Similarity=0.065 Sum_probs=103.7
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
..-.+++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++.+...- |... . ..+--...+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~-~----~Cg~C~sCr~i 82 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG-D----CCNSCSVCESI 82 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC-C----CCcccHHHHHH
Confidence 445689999999999998886542 245688999999999999999998763210 1000 0 00000001111
Q ss_pred HHHhhC-----CCCCCCchhhhH---HHHHh-hhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeC-Chhh
Q 002299 269 LSTLLD-----DRNVKNFPYIIL---NFQSK-RFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTR-DKQV 336 (940)
Q Consensus 269 ~~~~~~-----~~~~~~~~~~~~---~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR-~~~~ 336 (940)
...... ........++.. +.+.. ...+++=++|+|+++.. .....++..+....+...+|++|. ...+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 000000 000001111111 11111 11223346999999764 345555554443344555555553 3333
Q ss_pred hhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChh
Q 002299 337 LSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPL 390 (940)
Q Consensus 337 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (940)
... ......+++.+++.++....+...+-.... .-..+.+..+++.++|.+.
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLR 215 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHH
Confidence 322 223467899999999999888876633221 1123457788889998664
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.6e-05 Score=86.93 Aligned_cols=194 Identities=13% Similarity=0.144 Sum_probs=108.1
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc--c--cceEEEecchhhhccCCHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH--F--EGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--f--~~~~~~~~~~~~~~~~~~~~l 264 (940)
..-+++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+--. . .+...- ..+.-..
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~--------pCg~C~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT--------PCGVCQA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC--------CCCccHH
Confidence 345688998888889999887542 34567899999999999999998865210 0 000000 0000000
Q ss_pred HHHHHHH----hhC-CCCCCCchhhhHHHHHh----hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCC
Q 002299 265 RQQLLST----LLD-DRNVKNFPYIILNFQSK----RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRD 333 (940)
Q Consensus 265 ~~~l~~~----~~~-~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~ 333 (940)
.+.+... +.. ........++..+.+.. -..++.-++|+|+++... ..+.++..+.......++|++|.+
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 1111000 000 00000111122222211 112344589999998654 366666665544456666655543
Q ss_pred -hhhhhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 334 -KQVLSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 334 -~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
..+... ......++++.++.++..+.+.+.+...+.. ...+....|++.++|.+.-+.
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 333322 2234789999999999999988776432221 223557788889998775443
No 111
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=0.0001 Score=83.88 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=106.1
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc---------------------ccceE
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH---------------------FEGSY 247 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~ 247 (940)
....++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+--. |...+
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 345689999999999999997542 24457899999999999999999865211 11112
Q ss_pred EEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHh-hhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCC
Q 002299 248 FAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASG 324 (940)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~g 324 (940)
.++.. ...++..+ ++++ +.+.. ...++.-++|+|+++.. +..+.++..+....+.
T Consensus 92 eidaa----s~~~v~~i-R~l~-----------------~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 92 EVDAA----SRTKVEDT-RELL-----------------DNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEccc----ccCCHHHH-HHHH-----------------HHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 22110 01111111 1111 11111 11244558999999764 3456565555544566
Q ss_pred cEEEEEeCCh-hhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 325 SRIIITTRDK-QVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 325 s~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
+++|++|.+. .+.... .....+++++++.++..+.+.+.+-..+.. ...+....|++.++|.+.-+.
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 7777665543 222221 223578899999998888776665322221 123456778889999875443
No 112
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.14 E-value=4e-05 Score=84.74 Aligned_cols=172 Identities=19% Similarity=0.274 Sum_probs=97.2
Q ss_pred CCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 191 NKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
.+++.|++..++++.+.+.. +-...+-|.++|++|+|||++|++++++....| +....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v~~------ 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG------ 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEeeh------
Confidence 45788999999999876532 112345689999999999999999999765432 21110
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH------------H----HHHHHcccCCC--
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK------------Q----IEFLIGRLDWF-- 321 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~----~~~l~~~l~~~-- 321 (940)
..+... ..+. ........+...-...+.+|++|+++... . +..+...+...
T Consensus 199 --~~l~~~----~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 --SELVQK----FIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --HHHhHh----hccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 011111 0000 00111111222223467899999997531 1 22233222211
Q ss_pred CCCcEEEEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC-chhhHHHHHHHHHhcCC
Q 002299 322 ASGSRIIITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCAFGEDDPT-ASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 322 ~~gs~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~ 388 (940)
..+..||.||........ ...+..+.++..+.++..++|..+..+..... .. ...+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 235567777765433221 12356799999999999999998774432221 12 34556666654
No 113
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=5.6e-05 Score=86.54 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=104.9
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLL 269 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 269 (940)
...++||-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.+.-..... .-.+ +.-....++.
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~pc--------g~C~~C~~i~ 83 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-ATPC--------GVCSACLEID 83 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCC--------CCCHHHHHHh
Confidence 34678999999999999887532 234568999999999999999998663211000 0000 0000000000
Q ss_pred HH----hhC-CCCCCCchhhhHHHHHh----hhcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCCh-hhh
Q 002299 270 ST----LLD-DRNVKNFPYIILNFQSK----RFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDK-QVL 337 (940)
Q Consensus 270 ~~----~~~-~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~-~~~ 337 (940)
.. +.. ........++..+.+.. -..+++-++|+|+++.... .+.++..+........+|++|.+. .+.
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred cCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 00 000 00000111111111111 1234566999999986543 556665555445566666655443 222
Q ss_pred hh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhh
Q 002299 338 SN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLA 391 (940)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (940)
.. ......+++++++.++..+.+.+.+-..+. ....+....|++.++|.+--
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRD 216 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 11 112357899999999999888776532221 12234567888999997753
No 114
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00012 Score=81.45 Aligned_cols=199 Identities=15% Similarity=0.104 Sum_probs=108.7
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc--ccceEEEecchhhhccCCHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH--FEGSYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 266 (940)
....+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.-. +....|..... ...+.-...+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~---~~c~~c~~c~ 88 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT---EPCGECESCR 88 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC---CCCCCCHHHH
Confidence 345688999998899998887542 23457899999999999999999876321 11111110000 0000000111
Q ss_pred HHHHHhhC-----CCCCCCchhhhHHHHHh----hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEe-CCh
Q 002299 267 QLLSTLLD-----DRNVKNFPYIILNFQSK----RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITT-RDK 334 (940)
Q Consensus 267 ~l~~~~~~-----~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTt-R~~ 334 (940)
++...... ........+++.+.... -..+++-++|+|+++... .++.+...+....+.+.+|++| +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11100000 00000111222221111 123455588999997643 4666665555445666666555 433
Q ss_pred hhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 335 QVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 335 ~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
.+.... .....+++.+++.++..+.+...+-... ..-..+.+..+++.++|.+--+.
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 333221 1235788999999999888877653221 12234567889999999875443
No 115
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=5.5e-08 Score=96.16 Aligned_cols=182 Identities=22% Similarity=0.263 Sum_probs=114.7
Q ss_pred CccEEecCCCCCc--ccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 715 FLKDLDLESCGIE--ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 715 ~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
.|++|+|++..|+ .+-..+..+.+|+.|.|.++.+...+...+++-.+|+.|+|+.|+.++.... .+.--.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~------~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL------QLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH------HHHHHhh
Confidence 3777788777776 3444466778888888888777777777777778888888888876533210 0111123
Q ss_pred CCceEEEcCCCCCCccccC-cc-CCCCCccEEeeeCCCCCC--C-CCccCCCCCCCCEEEccCCCCccCchhHHHhhhcc
Q 002299 793 QALSKLELNNCSRLESFPS-SL-CMFESLASLKIIDCPRLD--G-LPDELGNLKALEELTVEGTAMREVPESLGQLLESL 867 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~-~~-~~l~~L~~L~l~~~~~~~--~-~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~l 867 (940)
+.|..|+|+-|......-. .+ .--++|..|+|++|...- . +..-...+|+|.+|||+.|..-. |..+
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~-~~~~------- 331 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK-NDCF------- 331 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-chHH-------
Confidence 7788888888765442211 11 112568888888875321 1 11122467888888888874321 1111
Q ss_pred CccccCCCCCCEEeccCCCCCcccCC---CcCCchhhhhhhccCCccCC
Q 002299 868 PSSLYKSKCLQDSYLDDCPNLHRLPD---ELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 868 p~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~l~~n~~~~ 913 (940)
..|..++.|++|.++.|..+ .|. .+...|+|.+|++.|++.+.
T Consensus 332 -~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 332 -QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred -HHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCch
Confidence 23456788888888888653 233 46677888889998877653
No 116
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.07 E-value=4.4e-05 Score=79.90 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=81.0
Q ss_pred CccchhhhHHHHHHHhhc-------------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccc--cceEEEecchhhhc
Q 002299 193 DLVGVECRIKEIELLLRT-------------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF--EGSYFAHNVREAQE 257 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~-------------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~ 257 (940)
.++|.+...+++.+.... ......-+.++|++|+||||+|+.+++.+...- ....++.+-.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 577877766665432211 112345688999999999999999998653211 1112222110
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh----------HHHHHHHcccCCCCCCcEE
Q 002299 258 TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL----------KQIEFLIGRLDWFASGSRI 327 (940)
Q Consensus 258 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~i 327 (940)
..+ .....+. ......+.+.+. ..-+|++|+++.. +.++.+...+........+
T Consensus 83 ----~~l----~~~~~g~-----~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 83 ----ADL----VGEYIGH-----TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred ----HHh----hhhhccc-----hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 011 1111110 111112222222 2348899999752 2455555554433334455
Q ss_pred EEEeCChhhhh------hC--CCCcEEEcCCCCHHHHHHHHHHhhc
Q 002299 328 IITTRDKQVLS------NC--RVDQIYDVKELVDVDALKLFSRCAF 365 (940)
Q Consensus 328 iiTtR~~~~~~------~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 365 (940)
|+++....... .. .....+.+++++.+|..+++.+.+.
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 56654432210 11 2235688999999999999987764
No 117
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.07 E-value=1.2e-07 Score=98.45 Aligned_cols=275 Identities=20% Similarity=0.259 Sum_probs=167.9
Q ss_pred ccccCCCceeeCCCCCCCCcCC--Cc-ccCCCccEEeccCCCCCcccc--ccccCCCcccEEEecCCCCCccc---CCcc
Q 002299 618 VQNLVNLKEIDLSDSKQLTKLP--DL-SLARNLESLDLWGCSSLMETH--SSIQYLNKLAFLYLVSCESLRSL---PHTI 689 (940)
Q Consensus 618 ~~~l~~L~~L~L~~~~~~~~~~--~l-~~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~l---~~~~ 689 (940)
..++++++.|.+.+|..++... .+ ..+++|++|++..|..++... .-...+++|++|++++|.....- +..-
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 4568888888888886544333 23 357889999998886655432 12346888999999988655431 1112
Q ss_pred CCCCCCEEEecCCCCCCcC--CC--CCcCCccEEecCCCC-CcccCcc--ccccCCCcEEEecCCCCCccccc--ccCCC
Q 002299 690 RSESLFELRLSGCTSLKRF--PK--ISSCFLKDLDLESCG-IEELPSS--IECLYNLRSIDLLNCTRLEYIAS--SIFTL 760 (940)
Q Consensus 690 ~l~~L~~L~l~~~~~l~~~--~~--~~~~~L~~L~L~~~~-i~~lp~~--~~~l~~L~~L~l~~~~~~~~~~~--~l~~l 760 (940)
++..++.+.+.||..+..- .. ....-+.++++.+|. ++...-+ -..+..|+.|+.++|...+..+- ...+.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 4566777777777543211 00 000014555655553 3322211 23577899999999877554322 13457
Q ss_pred CCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCcc--ccCccCCCCCccEEeeeCCCCCCCC-----
Q 002299 761 KSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLES--FPSSLCMFESLASLKIIDCPRLDGL----- 833 (940)
Q Consensus 761 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~----- 833 (940)
++|+.|.++.|..+......+ + +...+.|+.+++.+|..... +...-.+++.|+.|.+++|...+..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~--l----~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTM--L----GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CceEEEeccccchhhhhhhhh--h----hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 899999999997653322111 1 12237899999988865432 3333457889999999999876532
Q ss_pred CccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcc--cCCCcCCchhhhhhhcc
Q 002299 834 PDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHR--LPDELGSLEALKRLYAE 907 (940)
Q Consensus 834 ~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~l~ 907 (940)
...-..+..|+.|.|++++.. +. ..-+.+..+++|+.+++-+|..... +...-.++|+++..-+-
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i--~d-------~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLI--TD-------ATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhccccccccceeeecCCCCc--hH-------HHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 233345678999999999764 11 1123355678899999988876533 22244566766655443
No 118
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.06 E-value=0.00013 Score=81.88 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=90.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcccc--ceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFE--GSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF 293 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 293 (940)
.-+.|+|.+|+|||+||+++++.+.+.++ .++|+.. ..+...+...+... . ...+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~----------~~f~~~~~~~~~~~-----~----~~~f~~~~ 191 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLNDLVDSMKEG-----K----LNEFREKY 191 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHhcc-----c----HHHHHHHH
Confidence 34899999999999999999998766543 3455542 12233333322111 1 11223333
Q ss_pred cCCceEEEEeCCCChH---HH-HHHHcccCC-CCCCcEEEEEeC-Chhhh--------hhCCCCcEEEcCCCCHHHHHHH
Q 002299 294 SCKKVLIVFDDVTHLK---QI-EFLIGRLDW-FASGSRIIITTR-DKQVL--------SNCRVDQIYDVKELVDVDALKL 359 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iiiTtR-~~~~~--------~~~~~~~~~~l~~L~~~ea~~L 359 (940)
+.+.-+|++||++... .. +.+...+.. ...|..||+||. .+.-. ..+.....+++++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3345589999996431 11 222211111 123557888875 33211 1123345789999999999999
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 360 FSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 360 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
+.+.+-.... .-.+++...|++.+.|.--.+.
T Consensus 272 L~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 272 ARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhcCC--CCCHHHHHHHHhccccCHHHHH
Confidence 9888743222 1224667888888887655444
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.05 E-value=4.3e-05 Score=82.93 Aligned_cols=150 Identities=14% Similarity=0.193 Sum_probs=86.7
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
|....+++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++..... ...+.... .....+ +.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~~~~-----~~~~~i-~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVNGSD-----CRIDFV-RN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEeccCc-----ccHHHH-HH
Confidence 445678999999999999988753 234677779999999999999999876322 22332211 111111 11
Q ss_pred HHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh---HHHHHHHcccCCCCCCcEEEEEeCChhhh-hhC-CC
Q 002299 268 LLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL---KQIEFLIGRLDWFASGSRIIITTRDKQVL-SNC-RV 342 (940)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtR~~~~~-~~~-~~ 342 (940)
.+....... ...+.+-++|+|+++.. +..+.+...+.....++++|+||...... ... ..
T Consensus 87 ~l~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 111110000 01123458899999765 22233333333345677888888654321 111 12
Q ss_pred CcEEEcCCCCHHHHHHHHHH
Q 002299 343 DQIYDVKELVDVDALKLFSR 362 (940)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~ 362 (940)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 24677778888887766553
No 120
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=9.6e-07 Score=99.30 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=46.4
Q ss_pred ccCCCcceEEEecCCCcccccCCC--CCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCC
Q 002299 556 SMMPELRFLKFYGQNKCMITHFEG--APFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSK 633 (940)
Q Consensus 556 ~~~~~Lr~L~l~~~~~~~i~~l~~--~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~ 633 (940)
..+++|..|++.+|. |..+.. ....+|++|++++|.|..+ .++..+..|+.|++++|.
T Consensus 92 ~~~~~l~~l~l~~n~---i~~i~~~l~~~~~L~~L~ls~N~I~~i-----------------~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNK---IEKIENLLSSLVNLQVLDLSFNKITKL-----------------EGLSTLTLLKELNLSGNL 151 (414)
T ss_pred ccccceeeeeccccc---hhhcccchhhhhcchheeccccccccc-----------------cchhhccchhhheeccCc
Confidence 445555555555552 222222 1124555555555555544 223344445555555553
Q ss_pred CCCcCCCcccCCCccEEeccCCCCCcccc-ccccCCCcccEEEecCC
Q 002299 634 QLTKLPDLSLARNLESLDLWGCSSLMETH-SSIQYLNKLAFLYLVSC 679 (940)
Q Consensus 634 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 679 (940)
+..++.+..+++|+.+++++|.....-+ . ...+.+|+.+++.+|
T Consensus 152 -i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 152 -ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred -chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC
Confidence 3344444445555555555553332222 1 344445555555544
No 121
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00021 Score=82.61 Aligned_cols=195 Identities=18% Similarity=0.151 Sum_probs=110.8
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcccc----ceEEEecchhhhccCCHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE----GSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~l 264 (940)
....++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+.-... ...+-.+ +.-.-
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c--------g~c~~ 91 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC--------GVGEH 91 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC--------cccHH
Confidence 345689999999999999887543 2446889999999999999999986532211 0000000 00000
Q ss_pred HHHHHHHhhC-----CCCCCCchhh---hHHHHHhh-hcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEe-C
Q 002299 265 RQQLLSTLLD-----DRNVKNFPYI---ILNFQSKR-FSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITT-R 332 (940)
Q Consensus 265 ~~~l~~~~~~-----~~~~~~~~~~---~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTt-R 332 (940)
.+.+....-. ........++ +.+.++.. ..+++=++|+|+++... ..+.++..+....+.+.+|++| .
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 1111110000 0000111222 22222111 22344579999997654 3555655554445666666555 4
Q ss_pred ChhhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 333 DKQVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 333 ~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
...+.... .....+++..++.++....+.+.+-.... .-..+....|++.++|.+.-+..
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33333222 23368999999999999999887633221 12235678889999998865543
No 122
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.03 E-value=0.0001 Score=86.24 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
|...+.++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34456799999999988777643 234569999999999999999998754
No 123
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00015 Score=80.40 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=105.0
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc--------ccceEEEecchhhhccCC
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH--------FEGSYFAHNVREAQETGG 260 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 260 (940)
..-..++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++-.. . ....+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~~~~~ 89 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-ASNNS 89 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-ccCCC
Confidence 34567899999999999998754 234578899999999999999998876431 221111100 0 00011
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeC-Chhhh
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTR-DKQVL 337 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR-~~~~~ 337 (940)
...+ +++...... ....+++-++|+|+++... .++.+...+......+.+|+++. ...+.
T Consensus 90 ~~~i-~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 VDDI-RNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred HHHH-HHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 1111 111111100 0112344589999987543 35555544433344555555553 33332
Q ss_pred hh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 338 SN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
.. ......+++++++.++....+...+...+.. -..+.+..+++.++|.+-.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 22 1233578999999999998888766433221 22456778888888876543
No 124
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.01 E-value=0.00013 Score=82.81 Aligned_cols=178 Identities=15% Similarity=0.158 Sum_probs=99.4
Q ss_pred ccchhhh--HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccc--eEEEecchhhhccCCHHHHHHHHH
Q 002299 194 LVGVECR--IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEG--SYFAHNVREAQETGGLAHLRQQLL 269 (940)
Q Consensus 194 ~vGr~~~--~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~l~ 269 (940)
++|.... ......+.........-+.|+|.+|+|||+||+++++.+.++++. ++|+... .+...+.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~----------~~~~~~~ 194 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE----------KFTNDFV 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH----------HHHHHHH
Confidence 4465543 233333333222223458899999999999999999988776533 3454421 1122222
Q ss_pred HHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----HHHHHHcccCC-CCCCcEEEEEeCChh---------
Q 002299 270 STLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----QIEFLIGRLDW-FASGSRIIITTRDKQ--------- 335 (940)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iiiTtR~~~--------- 335 (940)
..+... . ...+.+.++ +.-+||+||++... ..+.+...+.. ...|..||+|+....
T Consensus 195 ~~~~~~-----~----~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 195 NALRNN-----T----MEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHHHcC-----c----HHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 222111 1 122233333 24489999995421 11222221111 123456888876431
Q ss_pred hhhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 336 VLSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 336 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
+...+.....+++++.+.++..+++.+.+-... ..-.+++...|++.+.|..-.+.
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHH
Confidence 122233446799999999999999998874322 22234677888888888766544
No 125
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=7.1e-07 Score=98.72 Aligned_cols=105 Identities=21% Similarity=0.133 Sum_probs=77.6
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCc-cCCCCCCCCEEEccCCCCccCchhHHHhhhccCccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPD-ELGNLKALEELTVEGTAMREVPESLGQLLESLPSSL 871 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~ 871 (940)
+.|+.|+|++|+..+.- .+..|+.|++|+|++|.+.. +|. ...++. |+.|.|+||.++.+- .+
T Consensus 187 ~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~tL~------------gi 250 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALTTLR------------GI 250 (1096)
T ss_pred HHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-heeeeecccHHHhhh------------hH
Confidence 77888999998776543 56778889999999988765 443 222343 889999999877653 35
Q ss_pred cCCCCCCEEeccCCCCCccc-CCCcCCchhhhhhhccCCccCC
Q 002299 872 YKSKCLQDSYLDDCPNLHRL-PDELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 872 ~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~ 913 (940)
.+|.+|+.|++++|-+.+.- -..+..|..|+.|+|.||++-|
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 57899999999999765421 1236678999999999997644
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00038 Score=80.56 Aligned_cols=196 Identities=15% Similarity=0.092 Sum_probs=107.2
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc--cccceEEEecchhhhccCCHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK--HFEGSYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (940)
.....+||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+.- ..+...|.....+ ..+.-...+
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC~ 88 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESCR 88 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHHH
Confidence 345689999999999998886532 2345789999999999999999986532 1111111110000 000001111
Q ss_pred HHHHHhhC-----CCCCCCchhhhHHHHHhh----hcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEe-CCh
Q 002299 267 QLLSTLLD-----DRNVKNFPYIILNFQSKR----FSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITT-RDK 334 (940)
Q Consensus 267 ~l~~~~~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTt-R~~ 334 (940)
++...... ........+++.+.+... ..+++-++|+|+++... ..+.|+..+....+.+.+|++| +..
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 11100000 000011122222222111 23345588999997654 3556665555444555555544 434
Q ss_pred hhhhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChh
Q 002299 335 QVLSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPL 390 (940)
Q Consensus 335 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (940)
.+... ......+++.+++.++....+.+.+-.... .-..+.+..+++.++|..-
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 44332 234578999999999988888776532221 1224567889999999655
No 127
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.98 E-value=0.0002 Score=80.33 Aligned_cols=157 Identities=16% Similarity=0.194 Sum_probs=89.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcccc--ceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFE--GSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF 293 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 293 (940)
..+.|+|..|+|||+|++++++.+.++.+ .++|+.. . .+...+...+... . ...+.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-~---------~~~~~~~~~~~~~-----~----~~~~~~~~ 197 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-E---------KFTNDFVNALRNN-----K----MEEFKEKY 197 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-H---------HHHHHHHHHHHcC-----C----HHHHHHHH
Confidence 45889999999999999999998766543 3445432 1 1122222222211 1 12222333
Q ss_pred cCCceEEEEeCCCChH---H-HHHHHcccCCC-CCCcEEEEEeCCh-h--------hhhhCCCCcEEEcCCCCHHHHHHH
Q 002299 294 SCKKVLIVFDDVTHLK---Q-IEFLIGRLDWF-ASGSRIIITTRDK-Q--------VLSNCRVDQIYDVKELVDVDALKL 359 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~~---~-~~~l~~~l~~~-~~gs~iiiTtR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~L 359 (940)
+. .-+||+||++... . .+.+...+... ..+..+|+|+... . +...+.....+.+++.+.++..++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 2388999996421 1 12222221111 2355688887642 1 111222335789999999999999
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 360 FSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 360 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
+.+.+-.... .-.+++...|++.+.|.+-.+.-
T Consensus 277 l~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 277 LQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHH
Confidence 9888743322 22346677788888877665443
No 128
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00018 Score=82.18 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=108.3
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc--cceEEEecchhhhccCCHHHHHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF--EGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
...++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+--.. .... .+.-...+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~p-----------Cg~C~sC~~ 81 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEP-----------CNTCEQCRK 81 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCC-----------CcccHHHHH
Confidence 34678998888888888886532 245688999999999999999998653211 0000 000000011
Q ss_pred HHHHh-------hCC-CCCCCchhhhHHHHHh-hhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCC-hh
Q 002299 268 LLSTL-------LDD-RNVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRD-KQ 335 (940)
Q Consensus 268 l~~~~-------~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~ 335 (940)
+.... ... ....+....+.+.+.. -..+++-++|+|+++.. +..+.|+..+........+|++|.. ..
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 10000 000 0000011111111111 12345669999999765 3355665555433445566665554 33
Q ss_pred hhhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh-hhHHHHhhh
Q 002299 336 VLSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP-LALKVLGSF 398 (940)
Q Consensus 336 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~ 398 (940)
+... ......+++++++.++..+.+...+..... .-..+.++.|++.++|.+ .|+..+...
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3322 122357899999999999888876643322 122456778888999865 566655443
No 129
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00065 Score=78.07 Aligned_cols=190 Identities=14% Similarity=0.075 Sum_probs=106.2
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
..-.++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.-..... +-.+ +.-...+.+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~pC--------g~C~~C~~i 79 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATPC--------GVCESCVAL 79 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCcc--------cccHHHHHh
Confidence 345689999999999999987542 244578999999999999999998653211000 0000 000000111
Q ss_pred HHH---------hhCCC-CCCCchhhhHHHHHh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEe-CCh
Q 002299 269 LST---------LLDDR-NVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITT-RDK 334 (940)
Q Consensus 269 ~~~---------~~~~~-~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTt-R~~ 334 (940)
... +.... ...+...++.+.+.. -..+++-++|+|+++... ..+.|+..+........+|++| ...
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000 00000 001111111111111 112345589999997543 4666666555445566666555 434
Q ss_pred hhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChh
Q 002299 335 QVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPL 390 (940)
Q Consensus 335 ~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (940)
.+.... .....+++..++.++..+.+.+.+-..... ...+....|++.++|.+-
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 443322 234689999999999998887766432221 123456778889999775
No 130
>PRK06620 hypothetical protein; Validated
Probab=97.97 E-value=9.2e-05 Score=74.33 Aligned_cols=134 Identities=11% Similarity=0.029 Sum_probs=79.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
+.+.|||++|+|||+|++.+++.... .++... .. .. + .. +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~----~~--------------------~----~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FF----NE--------------------E----IL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hh----ch--------------------h----HH-h
Confidence 56899999999999999997765421 222100 00 00 0 01 1
Q ss_pred CceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCChhh-------hhhCCCCcEEEcCCCCHHHHHHHHHHhhcC
Q 002299 296 KKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDKQV-------LSNCRVDQIYDVKELVDVDALKLFSRCAFG 366 (940)
Q Consensus 296 ~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~~~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 366 (940)
..-++++||++..++ +-.+...+. ..|..||+|++.... ...+....++++++++.++..+++.+.+..
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 224788999975433 222222222 356789999885422 122234458999999999988888877642
Q ss_pred CCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 367 EDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
.. -.-.+++.+.|++.+.|---.+.
T Consensus 163 ~~--l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 163 SS--VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred cC--CCCCHHHHHHHHHHccCCHHHHH
Confidence 21 11224667777777776654443
No 131
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00045 Score=82.65 Aligned_cols=189 Identities=11% Similarity=0.050 Sum_probs=107.0
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc--ccc-eEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH--FEG-SYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--f~~-~~~~~~~~~~~~~~~~~~l~ 265 (940)
....++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.-. ... .|=.+. -.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~------------sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD------------SC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH------------HH
Confidence 344678999999999999987542 23557899999999999999999866311 100 000000 00
Q ss_pred HHHHHH------hh-CCCCCCCchhhhHHHHH----hhhcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeC
Q 002299 266 QQLLST------LL-DDRNVKNFPYIILNFQS----KRFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTR 332 (940)
Q Consensus 266 ~~l~~~------~~-~~~~~~~~~~~~~~~l~----~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR 332 (940)
+.+... +. -........+++.+... .-..++.=++|||+++.... .+.|+..+......+.+|++|.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 000000 00 00000011112211111 11234455889999976543 5666666555556666665554
Q ss_pred C-hhhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 333 D-KQVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 333 ~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
+ ..+...+ .....|++..++.++..+++.+.+-.... ....+....|++.++|.+..+
T Consensus 159 ~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 159 EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3 3344332 33468999999999998888776532221 112345677889999987433
No 132
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00018 Score=83.44 Aligned_cols=190 Identities=13% Similarity=0.100 Sum_probs=105.6
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
..-..++|-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-....+-.+ ..+ ...
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC-~~C----------~~~ 82 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC-QEC----------IEN 82 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch-hHH----------HHh
Confidence 344678999999999999887542 34567899999999999999999865221000000000 000 000
Q ss_pred HHH----hhCCCC---CCCchhhhHHHHHh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEE-EEeCChhhh
Q 002299 269 LST----LLDDRN---VKNFPYIILNFQSK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRII-ITTRDKQVL 337 (940)
Q Consensus 269 ~~~----~~~~~~---~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii-iTtR~~~~~ 337 (940)
... +..... ......++.+.+.. -..+++-++|+|+++... .+..++..+........+| +|++...+.
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000 000000 00011111121111 123456699999997643 4666665554434455555 444444443
Q ss_pred hh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 338 SN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
.. ......+++.+++.++..+.+...+-..+. ....+.+..+++.++|-+.-+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 32 233468999999999999888776532221 112345778899998876533
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.96 E-value=5.7e-05 Score=76.10 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=109.8
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh--ccccceEEEecchhhhccCCHHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS--KHFEGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
|...+.++|-+..+..|.+.+.. ...+....+|++|.|||+.|++++..+- +-|+.++--.+.. ...+..-+.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS---derGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS---DERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc---ccccccchh
Confidence 45567899999999999888865 4567788999999999999999998652 3355443322221 122211110
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhh--hcCCc-eEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCCh-hhhhh
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKR--FSCKK-VLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDK-QVLSN 339 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~-~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~ 339 (940)
.++ .+.+.......+. -..++ =.+|||+++... .|..+...+..+...++.|+.+-.- .+...
T Consensus 107 ~Ki-----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 107 EKI-----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhh-----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 000 0000000000000 00123 378999998754 4888877766666677765444332 22211
Q ss_pred C-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh
Q 002299 340 C-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 340 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 389 (940)
. .....+..++|.+++..+-+...+-.... +-..+..+.|++.++|--
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGDL 224 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcH
Confidence 1 12246889999999999988888744332 223456788999998853
No 134
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.94 E-value=0.00012 Score=88.60 Aligned_cols=195 Identities=14% Similarity=0.139 Sum_probs=102.1
Q ss_pred HHHHHHHhhhhccCcccCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc------c
Q 002299 171 LIEEIVGEVLKRLDDTFQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF------E 244 (940)
Q Consensus 171 ~~~~i~~~~~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~ 244 (940)
.+++...+...+.. +...+.+|||+.++.++...|.... ..-+.++|++|+||||+|+.+++++.... .
T Consensus 169 ~l~~~~~~L~~~~r---~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQAR---EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHhc---CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 34444444433332 3445689999999999998886543 23466999999999999999999875432 1
Q ss_pred ceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh-cCCceEEEEeCCCChH-------H--HH-H
Q 002299 245 GSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF-SCKKVLIVFDDVTHLK-------Q--IE-F 313 (940)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------~--~~-~ 313 (940)
..+|.............. ..-.+.+...+.+.- .+++++|++|+++... + .. .
T Consensus 244 ~~i~~l~l~~l~ag~~~~----------------ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~ 307 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVK----------------GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANL 307 (852)
T ss_pred CeEEEeehhhhhcccccc----------------hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHH
Confidence 223322211110000000 000011111222111 2468899999985532 1 11 2
Q ss_pred HHcccCCCCCCcEEEEEeCChhhhhh-------CCCCcEEEcCCCCHHHHHHHHHHhhcC--CCCCCchhhHHHHHHHHH
Q 002299 314 LIGRLDWFASGSRIIITTRDKQVLSN-------CRVDQIYDVKELVDVDALKLFSRCAFG--EDDPTASYTKLTHEAVKY 384 (940)
Q Consensus 314 l~~~l~~~~~gs~iiiTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~i~~~ 384 (940)
+.+.+. ...-++|-||...+.... ...-..+.|++++.+++.+++....-. ......-..+....+++.
T Consensus 308 Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 308 LKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVEL 385 (852)
T ss_pred hhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHH
Confidence 333322 223456666654322111 122358999999999999997543311 111111223445556666
Q ss_pred hcCC
Q 002299 385 AKGV 388 (940)
Q Consensus 385 ~~g~ 388 (940)
+.+.
T Consensus 386 s~ry 389 (852)
T TIGR03345 386 SHRY 389 (852)
T ss_pred cccc
Confidence 6554
No 135
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00031 Score=79.46 Aligned_cols=194 Identities=14% Similarity=0.042 Sum_probs=105.6
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc---c--cceEEEecchhhhc--cCCHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH---F--EGSYFAHNVREAQE--TGGLA 262 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---f--~~~~~~~~~~~~~~--~~~~~ 262 (940)
.-..++|-+..++.+.+++..+. -.+.+.++|+.|+||||+|+.++..+... . ++..-. +...... ..++.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~-nc~~i~~g~~~d~~ 91 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE-NCVEIDKGSFPDLI 91 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH-HHHHHhcCCCCcEE
Confidence 34578999999999999987542 34556789999999999999999865311 0 000000 0000000 00000
Q ss_pred HHHHHHHHHhhCCC-CCCCchhhhHHHHHh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEe-CChhhh
Q 002299 263 HLRQQLLSTLLDDR-NVKNFPYIILNFQSK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITT-RDKQVL 337 (940)
Q Consensus 263 ~l~~~l~~~~~~~~-~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTt-R~~~~~ 337 (940)
.+.... ...+....+.+.+.. -..+++-++|+|+++... ..+.++..+....+...+|++| +...+.
T Consensus 92 --------eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 92 --------EIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred --------EEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence 000000 000001111111111 123456699999997543 3555555554444455555554 433333
Q ss_pred hh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 338 SN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
.. ......+.+.+++.++....+.+.+-.... ....+.+..+++.++|.+..+...
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 123357899999999999888876633221 122355677888999977654433
No 136
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=0.00022 Score=79.81 Aligned_cols=151 Identities=12% Similarity=0.114 Sum_probs=85.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
.-+.|+|+.|+|||+|++++++.+......++|+.. ..+...+...+... ..+.+++..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----------~~f~~~~~~~l~~~---------~~~~f~~~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----------ELFTEHLVSAIRSG---------EMQRFRQFYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----------HHHHHHHHHHHhcc---------hHHHHHHHcc-
Confidence 457899999999999999999987655444556542 11222222222110 0122333333
Q ss_pred CceEEEEeCCCChHH----HHHHHcccCC-CCCCcEEEEEeCCh-h--------hhhhCCCCcEEEcCCCCHHHHHHHHH
Q 002299 296 KKVLIVFDDVTHLKQ----IEFLIGRLDW-FASGSRIIITTRDK-Q--------VLSNCRVDQIYDVKELVDVDALKLFS 361 (940)
Q Consensus 296 ~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~iiiTtR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~Lf~ 361 (940)
..-+|++||++.... .+.+...+.. ...|..||+||... . +...+.....+++.+++.++..+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 344888999854321 1222222110 12456788888542 1 12223344688999999999999998
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHhcCC
Q 002299 362 RCAFGEDDPTASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~i~~~~~g~ 388 (940)
+++-.... .-.+++...|+..+.+.
T Consensus 282 ~k~~~~~~--~l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSI--RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCC--CCCHHHHHHHHHhcCCC
Confidence 87743221 12235555566666654
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00018 Score=84.06 Aligned_cols=196 Identities=15% Similarity=0.074 Sum_probs=109.7
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
....++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.-.....-+- ..+.-...+.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~--------~c~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGR--------PCGTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCccCHHHHHH
Confidence 345689999999999988887542 234568999999999999999998763211000000 00001111111
Q ss_pred HHHhhC-----CCCCCCchhhhH---HHHHh-hhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCCh-hh
Q 002299 269 LSTLLD-----DRNVKNFPYIIL---NFQSK-RFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDK-QV 336 (940)
Q Consensus 269 ~~~~~~-----~~~~~~~~~~~~---~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~~ 336 (940)
...... ........++.. +.+.. -..+++-++|+|+++.. +..+.++..+....+.+.+|+++.+. .+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 111000 000001111111 11111 11234568999999754 34666665554444566666665433 33
Q ss_pred hhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 337 LSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
.... .....++++.++.++....+.+.+...... -..+.+..+++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 223578899999999998888776432221 22356788999999988755443
No 138
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.91 E-value=9.1e-05 Score=81.94 Aligned_cols=155 Identities=21% Similarity=0.279 Sum_probs=89.8
Q ss_pred CCCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhcc
Q 002299 190 DNKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQET 258 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (940)
.-.++.|.+..++++.+.+.. +-...+-|.|+|++|+|||++|+++++.....|- .+... +
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~s-e---- 252 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVGS-E---- 252 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEecc-h----
Confidence 335678999999998876642 1123456889999999999999999998765541 11110 0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----------------HHHHHHcccCCC-
Q 002299 259 GGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----------------QIEFLIGRLDWF- 321 (940)
Q Consensus 259 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~- 321 (940)
+... ..+. ........+.....+.+.+|+||+++... .+..++..+..+
T Consensus 253 -----L~~k----~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 253 -----LIQK----YLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred -----hhhh----hcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 1000 0000 00111122222223467888999874321 122222222211
Q ss_pred -CCCcEEEEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhhcC
Q 002299 322 -ASGSRIIITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCAFG 366 (940)
Q Consensus 322 -~~gs~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 366 (940)
..+..||+||........ ...+..++++..+.++..++|..+..+
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 235678888875543322 123568899999999999999877643
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00033 Score=79.17 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=109.0
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc-cccc--eEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK-HFEG--SYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~--~~~~~~~~~~~~~~~~~~l~ 265 (940)
..-..+||-+...+.+...+..+. -.+...++|+.|+||||+|+.+++.+-. .... .+..+... ..+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C--------~~~~ 81 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC--------QSAL 81 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH--------HHHh
Confidence 345689999988899998887542 3456689999999999999999986521 1110 00000000 0000
Q ss_pred HHHHHHhh-CCCCCCCchhhhHHHHHh----hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCChh-hh
Q 002299 266 QQLLSTLL-DDRNVKNFPYIILNFQSK----RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDKQ-VL 337 (940)
Q Consensus 266 ~~l~~~~~-~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-~~ 337 (940)
...-..+. .........+++.+.+.. -..+++-++|+|+++... ..+.++..+....+.+++|++|.+.. +.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 00000000 000000011222222211 012345588999997654 35566555554456677777776542 22
Q ss_pred hh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 338 SN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
.. ......+++.+++.++..+.+.+.+-..+. .-.++.+..|++.++|.+.-+..
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHH
Confidence 11 122468899999999999988776643222 12245678899999998855443
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.91 E-value=0.00015 Score=87.24 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=86.5
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc------cceEEEecchhhhccCCHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF------EGSYFAHNVREAQETGGLA 262 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 262 (940)
...+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++++...- ...+|......
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~-------- 248 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS-------- 248 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH--------
Confidence 344679999999999998886542 23467999999999999999999874321 23344322111
Q ss_pred HHHHHHHHHhhCCCCCCCchhhhH-HHHHhhhcCCceEEEEeCCCChH-----------HHHHHHcccCCCCCCcEEEEE
Q 002299 263 HLRQQLLSTLLDDRNVKNFPYIIL-NFQSKRFSCKKVLIVFDDVTHLK-----------QIEFLIGRLDWFASGSRIIIT 330 (940)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~l~~~l~~~~~gs~iiiT 330 (940)
+. .. .. .....+... ..+.+.-..++.+|++|+++... .-+.+.+.+. ...-++|-+
T Consensus 249 -l~----a~---~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~Iga 317 (731)
T TIGR02639 249 -LL----AG---TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGS 317 (731)
T ss_pred -Hh----hh---cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEe
Confidence 11 00 00 001111111 22222212457899999986331 1222333332 122344544
Q ss_pred eCChhhhh------h-CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 331 TRDKQVLS------N-CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 331 tR~~~~~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
|...+... . ...-..+.++.++.++..+++....
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 44322111 0 1122578999999999999998654
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=0.0004 Score=79.02 Aligned_cols=156 Identities=14% Similarity=0.191 Sum_probs=89.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcccc--ceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFE--GSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF 293 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 293 (940)
..+.|+|..|+|||.|+.++++.....+. .++|+.. ..+...+...+... ..+.+++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita----------eef~~el~~al~~~---------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS----------EEFTNEFINSIRDG---------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHHHHHHHHHhc---------cHHHHHHHh
Confidence 34899999999999999999998765432 3445542 12222222222111 112233333
Q ss_pred cCCceEEEEeCCCCh---HHH-HHHHcccCCC-CCCcEEEEEeCCh---------hhhhhCCCCcEEEcCCCCHHHHHHH
Q 002299 294 SCKKVLIVFDDVTHL---KQI-EFLIGRLDWF-ASGSRIIITTRDK---------QVLSNCRVDQIYDVKELVDVDALKL 359 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~---~~~-~~l~~~l~~~-~~gs~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 359 (940)
+. .=+|||||++.. +.+ +.+...+... ..|..|||||+.. .+...+...-+++++..+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 32 248889999543 111 2222221111 3456788888753 1222334556899999999999999
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 360 FSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 360 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
+.+++-.... .-.++++..|++.+.+..-.|.
T Consensus 455 L~kka~~r~l--~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 455 LRKKAVQEQL--NAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHhcCC--CCCHHHHHHHHHhccCCHHHHH
Confidence 9988743322 2224666777777666544433
No 142
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.88 E-value=1.3e-07 Score=104.28 Aligned_cols=129 Identities=20% Similarity=0.186 Sum_probs=93.3
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
|...+.++|.+..+..++.-++.|+.|+|++|+....- .+..++.|++|+|++|. +..+|.+...- -.|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~g--------c~L 234 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVG--------CKL 234 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhh--------hhh
Confidence 77777888888888888888999999999998776543 57778999999999865 44444432211 348
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCC-CCccCCCCCCCCEEEccCCCCccCc
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDG-LPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
+.|.|++|...+ +- .+.++.+|+.|++++|-+.+. -..-+..+..|+.|+|.||++-.-|
T Consensus 235 ~~L~lrnN~l~t-L~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 235 QLLNLRNNALTT-LR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred eeeeecccHHHh-hh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 899999886543 22 366788899999999877651 1122556778889999999876444
No 143
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.00097 Score=65.98 Aligned_cols=178 Identities=17% Similarity=0.186 Sum_probs=100.0
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKR 292 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 292 (940)
++.+++.++|.-|.|||.++++....+.+.=-.++.++ ........+...+...+..++ ........+.+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHH
Confidence 45678999999999999999966554433222223332 123344556666666665532 22222223333222
Q ss_pred ----h-cCCc-eEEEEeCCCChH--HHHHH---HcccCCCCCCcEEEEEeCCh-------hhhhhC-CCCcE-EEcCCCC
Q 002299 293 ----F-SCKK-VLIVFDDVTHLK--QIEFL---IGRLDWFASGSRIIITTRDK-------QVLSNC-RVDQI-YDVKELV 352 (940)
Q Consensus 293 ----l-~~~~-~LlVlDdv~~~~--~~~~l---~~~l~~~~~gs~iiiTtR~~-------~~~~~~-~~~~~-~~l~~L~ 352 (940)
. ++++ +.+++|+..+.. .++.+ ...-......-+|+..-..+ .+.... ....+ |++.|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 2 4567 899999986532 33333 22211111112233332211 001111 11123 8999999
Q ss_pred HHHHHHHHHHhhcCCCCCCch-hhHHHHHHHHHhcCChhhHHHHhh
Q 002299 353 DVDALKLFSRCAFGEDDPTAS-YTKLTHEAVKYAKGVPLALKVLGS 397 (940)
Q Consensus 353 ~~ea~~Lf~~~~~~~~~~~~~-~~~~~~~i~~~~~g~PLal~~~~~ 397 (940)
.++...++..+..+...+.+- ..+....|..+..|.|.+|..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999988776554333332 245667888999999999887654
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.87 E-value=0.00025 Score=79.69 Aligned_cols=160 Identities=19% Similarity=0.300 Sum_probs=89.2
Q ss_pred CCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccc-----cceEEEecchh
Q 002299 191 NKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF-----EGSYFAHNVRE 254 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~ 254 (940)
-..+.|.+..++++.+.+.. +-...+-+.|+|++|.|||++|+++++.+...+ ....|+.....
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 45678899998888776532 112345588999999999999999999876542 22334432110
Q ss_pred hhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhh-hcCCceEEEEeCCCChH---------H-----HHHHHcccC
Q 002299 255 AQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKR-FSCKKVLIVFDDVTHLK---------Q-----IEFLIGRLD 319 (940)
Q Consensus 255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~---------~-----~~~l~~~l~ 319 (940)
.+ +....+.. ......+....++. ..+++++|+||+++... + +..++..+.
T Consensus 261 --------eL----l~kyvGet--e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 261 --------EL----LNKYVGET--ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred --------hh----cccccchH--HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 00 00000000 00001111122221 23478999999996421 1 233433333
Q ss_pred CCC--CCcEEEEEeCChhhhh-h----CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 320 WFA--SGSRIIITTRDKQVLS-N----CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 320 ~~~--~gs~iiiTtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
... .+..||.||-...... . ...+..++++..+.++..++|..+.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 222 3344555554433222 1 1345678999999999999998876
No 145
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00034 Score=78.63 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=104.6
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc---cc-eEEEec-chhhhccCCHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF---EG-SYFAHN-VREAQETGGLAH 263 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f---~~-~~~~~~-~~~~~~~~~~~~ 263 (940)
..-++++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++.+...- +. .+-.+. ...........
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 345689999999999999887542 235678999999999999999998653210 00 000000 00000000000
Q ss_pred HHHHHHHHhhCCCC-CCCchhhhHHHHH-hhhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCC-hhhhh
Q 002299 264 LRQQLLSTLLDDRN-VKNFPYIILNFQS-KRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRD-KQVLS 338 (940)
Q Consensus 264 l~~~l~~~~~~~~~-~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~-~~~~~ 338 (940)
...+.+... ..+...++.+.+. ....+++-++|+|+++... ..+.+...+....+...+|++|.. ..+..
T Consensus 92 -----~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 92 -----VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPG 166 (451)
T ss_pred -----eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcch
Confidence 000000000 0001111111111 0112456689999987543 345555554444456666666643 33322
Q ss_pred hC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhh
Q 002299 339 NC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLA 391 (940)
Q Consensus 339 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (940)
.. .....+++.+++.++..+.+.+.+-.... .-..+.+..|++.++|.+.-
T Consensus 167 tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 167 TILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred HHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 21 23467899999999998888776532221 12245678899999997643
No 146
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.84 E-value=0.00033 Score=77.05 Aligned_cols=175 Identities=17% Similarity=0.223 Sum_probs=97.9
Q ss_pred CCCCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhc
Q 002299 189 SDNKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQE 257 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (940)
..-.++.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.....| +.+.. .
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~~-s---- 213 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVVG-S---- 213 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEeh-H----
Confidence 3345788999888888765531 112356789999999999999999998764433 11111 0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH------------H----HHHHHcccCCC
Q 002299 258 TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK------------Q----IEFLIGRLDWF 321 (940)
Q Consensus 258 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~----~~~l~~~l~~~ 321 (940)
.+.... .+. ......+.+.......+.+|++|+++... . +..++..+...
T Consensus 214 -----~l~~k~----~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 -----EFVQKY----LGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred -----HHHHHh----cch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 111111 000 01111222222334578899999976421 1 22333333221
Q ss_pred --CCCcEEEEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhhcCCCC-CCchhhHHHHHHHHHhcCCh
Q 002299 322 --ASGSRIIITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCAFGEDD-PTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 322 --~~gs~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 389 (940)
..+..||+||........ ...+..++++..+.++..++|..+..+... ..-+ ..++++.+.|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 245667888875543321 134567899999999988888866533221 1112 345566666553
No 147
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.00051 Score=68.68 Aligned_cols=259 Identities=15% Similarity=0.161 Sum_probs=137.0
Q ss_pred CCCCCCccchhhhHHHHHHHhhcC---CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTG---SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (940)
|..-.+|||.++..+++.-++... ....--|.++|++|.||||||.-+++.+...+... .+..-++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK------ 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEK------ 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccC------
Confidence 445578999999888887776542 23345689999999999999999999875543211 1110000
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH-HHHHHcc-c--------CCCCCCcE--------
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ-IEFLIGR-L--------DWFASGSR-------- 326 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-~~~l~~~-l--------~~~~~gs~-------- 326 (940)
+.++...+.. ++.. =++.+|.+..... .++++.+ + ...++++|
T Consensus 91 -----------------~gDlaaiLt~-Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 -----------------PGDLAAILTN-LEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -----------------hhhHHHHHhc-CCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 0111111111 1112 2556677765432 2222111 1 11133333
Q ss_pred ---EEEEeCChhhhhhC--CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcC
Q 002299 327 ---IIITTRDKQVLSNC--RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSG 401 (940)
Q Consensus 327 ---iiiTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 401 (940)
|=-|||...+...+ ...-+.+++-.+.+|-.+...+.+..-+ -+-.++.+.+|+++..|-|--..-+-+.++
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR- 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVR- 228 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHH-
Confidence 45689976554433 2334678888999999999888773211 222345688999999999965443333222
Q ss_pred CCHHHHHHHHHH--HhcCCCchHHHHHHhhhcCCChhhHHHHHhhhcccCC--CCHHHHHHHHHHCCC-CchhchHHHHh
Q 002299 402 RRKEEWKSAMRK--LEIVPHMEIQEVLKISYDGLDGHEQDIFLDIACFLVG--EDRDQVIRFLDSCGF-FPEIGLRVLVD 476 (940)
Q Consensus 402 ~~~~~w~~~l~~--l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la~f~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~ 476 (940)
++..+... +...........+.+--..|+...++.+..+.-.+.+ ...+.+...+..+.. +.+.+-..|++
T Consensus 229 ----Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 229 ----DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred ----HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 11111110 0000001122333444445666666666555544433 345555444433222 12223345788
Q ss_pred ccceEEe
Q 002299 477 KSLITID 483 (940)
Q Consensus 477 ~sll~~~ 483 (940)
.|+++..
T Consensus 305 ~gfi~RT 311 (332)
T COG2255 305 QGFIQRT 311 (332)
T ss_pred hchhhhC
Confidence 8888765
No 148
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.0021 Score=75.06 Aligned_cols=190 Identities=17% Similarity=0.109 Sum_probs=106.3
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccc---e-EEEec-chhhhc--cCCHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEG---S-YFAHN-VREAQE--TGGLA 262 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~---~-~~~~~-~~~~~~--~~~~~ 262 (940)
.-+.++|-+...+.|..++..+. -.+.+.++|+.|+||||+|+.++..+.-.... . |=.+. .+.... ..++.
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 34688999999999999987542 34567899999999999999999865311000 0 00000 000000 00000
Q ss_pred HHHHHHHHHhhCCCCCCCchhhhHHHHHhh----hcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEe-CChh
Q 002299 263 HLRQQLLSTLLDDRNVKNFPYIILNFQSKR----FSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITT-RDKQ 335 (940)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTt-R~~~ 335 (940)
. +... .....+++...+.+. ..+++=++|+|+++... ..+.|+..+......+.+|++| +...
T Consensus 94 ~--------ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~k 163 (614)
T PRK14971 94 E--------LDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK 163 (614)
T ss_pred E--------eccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchh
Confidence 0 0000 001111222222110 12344488999997654 3566665555445566665544 4444
Q ss_pred hhhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 336 VLSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 336 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
+... .....++++.+++.++....+.+.+-..+. ....+.+..|++.++|..--+
T Consensus 164 Il~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 164 ILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred chHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 4433 233468999999999999988876633222 122345778899999876543
No 149
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.0019 Score=75.30 Aligned_cols=196 Identities=16% Similarity=0.089 Sum_probs=107.9
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEecchhhhccCCHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
..-..++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+... ......- ..+.-...+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~--------~Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE--------PCGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC--------CCcccHHHHH
Confidence 344678999999999999887543 23467899999999999999999965321 1100000 0000111111
Q ss_pred HHHHhhC-----CCCCCCchhhhHHHHHhh----hcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCC-hh
Q 002299 268 LLSTLLD-----DRNVKNFPYIILNFQSKR----FSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRD-KQ 335 (940)
Q Consensus 268 l~~~~~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~-~~ 335 (940)
+...... ........+.+.+.+... ..+++-++|+|+++... ..+.++..+........+|++|.+ ..
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 1111000 000011111222222111 12345588999998653 466666555543445555554443 33
Q ss_pred hhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 336 VLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 336 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
+.... .....+++..++.++....+.+.+-..... -..+.+..|++.++|.+..+..+
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33222 234678889999999888887765332211 12355778899999988655433
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=4.4e-06 Score=82.99 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=62.3
Q ss_pred CCceEEEcCCCCCCc--cccCccCCCCCccEEeeeCCCCCCC-CCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCc
Q 002299 793 QALSKLELNNCSRLE--SFPSSLCMFESLASLKIIDCPRLDG-LPDELGNLKALEELTVEGTAMREVPESLGQLLESLPS 869 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~ 869 (940)
+.+.+|.+..|.... .....-..+|++..+-+..|++.+. --.....+|.+..|+|+.|+|.+..+ + .
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas-v--------D 243 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS-V--------D 243 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH-H--------H
Confidence 345555555553211 1111123467778888888877552 22345556777788888887754321 1 2
Q ss_pred cccCCCCCCEEeccCCCCCcccCC------CcCCchhhhhhhcc
Q 002299 870 SLYKSKCLQDSYLDDCPNLHRLPD------ELGSLEALKRLYAE 907 (940)
Q Consensus 870 ~~~~l~~L~~L~L~~n~~~~~~p~------~~~~l~~L~~L~l~ 907 (940)
.+.++++|..|.++++++...+.. .++.|++++.|+=+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 245678888888888887765433 35667777776544
No 151
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.80 E-value=4.6e-05 Score=81.06 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=59.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhc-cccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCch------hhhHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSK-HFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFP------YIILNF 288 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~------~~~~~~ 288 (940)
...+|+|++|+||||||+++|+.+.. +|+..+|+..+++. ...+.++++++...+.....+.... ....+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999997654 79999999876553 2356677777764332211111111 111111
Q ss_pred HHhh-hcCCceEEEEeCCCChHH
Q 002299 289 QSKR-FSCKKVLIVFDDVTHLKQ 310 (940)
Q Consensus 289 l~~~-l~~~~~LlVlDdv~~~~~ 310 (940)
-... ..+++++|++|++.....
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHH
Confidence 1111 367999999999966544
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.0021 Score=68.56 Aligned_cols=192 Identities=13% Similarity=0.091 Sum_probs=107.7
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh-c--------------cccceEEEecchhhh
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS-K--------------HFEGSYFAHNVREAQ 256 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~--------------~f~~~~~~~~~~~~~ 256 (940)
.+++|-+...+.+.+.+..+. -.+...++|+.|+||+++|.++++.+- . .++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 468999999999999887542 246789999999999999999998642 1 12333444321000
Q ss_pred ccCCHHHHHHHHHHHhh--CCCCCCCchhhhHHHHHhhh-----cCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEE
Q 002299 257 ETGGLAHLRQQLLSTLL--DDRNVKNFPYIILNFQSKRF-----SCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRI 327 (940)
Q Consensus 257 ~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~i 327 (940)
..... -........ ......-..++. +.+.+.+ .+++=++|+|+++.... ...++..+-... .+.+
T Consensus 82 ~g~~~---~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 QGKLI---TASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccc---chhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000 000000000 000001111221 2222222 34556899999876543 455554444334 4455
Q ss_pred EEEe-CChhhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 328 IITT-RDKQVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 328 iiTt-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
|++| ....+.... .....+++.+++.++..+.+.+..... ..+ .....++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~~~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--ILN---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--cch---hHHHHHHHHcCCCHHHHHHH
Confidence 5444 444444432 334789999999999999998764211 111 11357888999999765543
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.77 E-value=0.00044 Score=84.20 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=41.5
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
...+.++||+.++.++.+.|.... ..-+.++|++|+|||++|+.++.++..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 344679999999999999886543 234669999999999999999998754
No 154
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.0014 Score=75.60 Aligned_cols=193 Identities=11% Similarity=0.056 Sum_probs=109.1
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
..-.+++|-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-..-.....-+.. . ...+++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-----C----~~C~~i 82 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-----C----SSCKSI 82 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-----c----hHHHHH
Confidence 345688999999999999987542 345688999999999999999998653210000000000 0 000000
Q ss_pred HHHh----hC-CCCCCCchhhhHHHH---Hh-hhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCC-hhh
Q 002299 269 LSTL----LD-DRNVKNFPYIILNFQ---SK-RFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRD-KQV 336 (940)
Q Consensus 269 ~~~~----~~-~~~~~~~~~~~~~~l---~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~-~~~ 336 (940)
.... .. ........++..+.. .. -..+++-++|+|+++... .++.++..+....+...+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 0000 00 000001112222111 11 123455689999997654 366676666544556666666544 333
Q ss_pred hhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 337 LSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
.... .....++..+++.++..+.+.+.+..... .-..+.+..|++.++|.+..+.
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 2221 23357899999999998888877643322 2224567778899999875443
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.76 E-value=0.00033 Score=85.47 Aligned_cols=151 Identities=16% Similarity=0.134 Sum_probs=84.9
Q ss_pred CCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-c-----cceEEEecchhhhccCCHHHH
Q 002299 191 NKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-F-----EGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~l 264 (940)
.+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.++.++... - ...+|..+...
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~---------- 245 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL---------- 245 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH----------
Confidence 3568999999999999997543 2235799999999999999999976432 1 23344332211
Q ss_pred HHHHHHHhhCCCCCCCchh-hhHHHHHhhhcCCceEEEEeCCCChH---------HHHHH-HcccCCCCCCcEEEEEeCC
Q 002299 265 RQQLLSTLLDDRNVKNFPY-IILNFQSKRFSCKKVLIVFDDVTHLK---------QIEFL-IGRLDWFASGSRIIITTRD 333 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~LlVlDdv~~~~---------~~~~l-~~~l~~~~~gs~iiiTtR~ 333 (940)
++. +.. .....+ .+...+.+.-..++.+|++|+++... +...+ .+.+. ...-++|.+|..
T Consensus 246 ---l~a---g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~ 316 (821)
T CHL00095 246 ---LLA---GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTL 316 (821)
T ss_pred ---Hhc---cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCH
Confidence 110 111 011111 12222222223467899999985321 12222 22222 223455555554
Q ss_pred hhhhh------h-CCCCcEEEcCCCCHHHHHHHHHH
Q 002299 334 KQVLS------N-CRVDQIYDVKELVDVDALKLFSR 362 (940)
Q Consensus 334 ~~~~~------~-~~~~~~~~l~~L~~~ea~~Lf~~ 362 (940)
.+... . ......+.++..+.++..+++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43211 1 12235678999999998888764
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00088 Score=71.83 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=60.5
Q ss_pred ceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCChh-hhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 002299 297 KVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDKQ-VLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTA 372 (940)
Q Consensus 297 ~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 372 (940)
+=++|+|+++... ....++..+-...+++.+|+||.+.. +.... .....+.+.+++.+++.+.+.... .. .
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~--- 181 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-S--- 181 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-C---
Confidence 3355779997644 35566555554456777777777653 33332 234679999999999999987653 11 1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHH
Q 002299 373 SYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 373 ~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
..+.+..++..++|.|.....+
T Consensus 182 -~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233557788999999765544
No 157
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00083 Score=77.67 Aligned_cols=191 Identities=16% Similarity=0.072 Sum_probs=105.2
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc-cceEEEecchhhhccCCHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF-EGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
..-..++|.+...+.+.+++..+. -.+.+.++|+.|+||||+|+.+++.+-..- ...- ..+.-.....
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~----------pC~~C~~C~~ 81 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE----------PCNECEICKA 81 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC----------CCCccHHHHH
Confidence 445689999999999999987643 345677899999999999999998653110 0000 0000000111
Q ss_pred HHHHhhCC-----CCCCCchhh---hHHHHHh-hhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEe-CChh
Q 002299 268 LLSTLLDD-----RNVKNFPYI---ILNFQSK-RFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITT-RDKQ 335 (940)
Q Consensus 268 l~~~~~~~-----~~~~~~~~~---~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt-R~~~ 335 (940)
+......+ .......++ +.+.+.. -..+++-++|+|+++.. ..+..++..+........+|++| ....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 10000000 000011111 1111111 12345568899999865 34666665554334455555444 4333
Q ss_pred hhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 336 VLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 336 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
+.... .....++..+++.++..+.+...+-..+.. -..+.+..|++.++|.+..+
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 33221 234578899999999988887766332221 12355677888888877543
No 158
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.74 E-value=3.9e-05 Score=78.40 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=59.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhc-cccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCc------hhhhHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSK-HFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNF------PYIILN 287 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~~~~~~ 287 (940)
-..++|.|++|+|||||++++++.+.. +|+..+|+.++.+. ...+.++++.+...+.-...+... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999997644 68889898765432 246777777773332221111111 111122
Q ss_pred HHHh-hhcCCceEEEEeCCCChHH
Q 002299 288 FQSK-RFSCKKVLIVFDDVTHLKQ 310 (940)
Q Consensus 288 ~l~~-~l~~~~~LlVlDdv~~~~~ 310 (940)
.... +-.++++++++|++....+
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a~ 117 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLAR 117 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhhh
Confidence 2222 2357999999999865443
No 159
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.00098 Score=71.33 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=105.6
Q ss_pred CCCCCccchhhhHHHHHHHhhc--CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccc--eEEEecchhhhccCCHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRT--GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEG--SYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l 264 (940)
..+..++||+.++..+..++.. +.+..+-+-|.|-+|.|||.+...++.+....... ++++.+.. -.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s----l~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS----LTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----ccchHHH
Confidence 4467899999999999998865 23456678999999999999999999876554433 36665432 1233455
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhhcC--CceEEEEeCCCChHH--HHHHHcccCC-CCCCcEEEEEeCCh-----
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRFSC--KKVLIVFDDVTHLKQ--IEFLIGRLDW-FASGSRIIITTRDK----- 334 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~iiiTtR~~----- 334 (940)
...+...+...........+..+.+.+...+ ..+|+|+|.++.... -+.+...+.| .-+++|+|+.---.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 5566555533333223334445555555544 358999999876442 1111112222 13566665533211
Q ss_pred -hhhhhC-----CCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 335 -QVLSNC-----RVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 335 -~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
..+..+ .....+..++.+.++-.+.+..+.
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 111111 123577889999999999999887
No 160
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.71 E-value=0.0006 Score=71.92 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccc--cceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHF--EGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
-+.++|++|+|||++|+.+++.+.... ...-|+.... ..+ .....+.. .....+.+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~--------~~l----~~~~~g~~-----~~~~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR--------DDL----VGQYIGHT-----APKTKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH--------HHH----hHhhcccc-----hHHHHHHHHHc--
Confidence 578999999999999999988654321 1112332211 111 11121111 11122222222
Q ss_pred CCceEEEEeCCCCh-----------HHHHHHHcccCCCCCCcEEEEEeCChhhhhhC--------CCCcEEEcCCCCHHH
Q 002299 295 CKKVLIVFDDVTHL-----------KQIEFLIGRLDWFASGSRIIITTRDKQVLSNC--------RVDQIYDVKELVDVD 355 (940)
Q Consensus 295 ~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~--------~~~~~~~l~~L~~~e 355 (940)
..-+|++|+++.. +.++.+...+.....+.+||+++......... .....+++++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 3358899999632 12344544444344566777776543221111 123578999999999
Q ss_pred HHHHHHHhh
Q 002299 356 ALKLFSRCA 364 (940)
Q Consensus 356 a~~Lf~~~~ 364 (940)
..+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988776
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.69 E-value=0.00062 Score=83.32 Aligned_cols=154 Identities=13% Similarity=0.076 Sum_probs=85.3
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc------cceEEEecchhhhccCCHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF------EGSYFAHNVREAQETGGLAH 263 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 263 (940)
..+.+|||+.++.++...|.... ..-+.++|++|+|||++|+.+++++...+ ...+|......
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~--------- 239 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA--------- 239 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH---------
Confidence 44579999999999999886543 23456899999999999999999875432 22333322111
Q ss_pred HHHHHHHHhhCCCCCCCchh-hhHHHHHhhhc-CCceEEEEeCCCChH---------HHHHHHcccCCCCCCcEEEEEeC
Q 002299 264 LRQQLLSTLLDDRNVKNFPY-IILNFQSKRFS-CKKVLIVFDDVTHLK---------QIEFLIGRLDWFASGSRIIITTR 332 (940)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~-~~~~~l~~~l~-~~~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iiiTtR 332 (940)
+. . +.. .....+ .+...+.+.-+ +++.+|++|+++... +...++.+... ...-++|-+|.
T Consensus 240 l~----a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt 310 (852)
T TIGR03346 240 LI----A---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATT 310 (852)
T ss_pred Hh----h---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCc
Confidence 10 0 000 000111 12222222212 368999999986432 12222222221 12234554544
Q ss_pred Chhhhhh-------CCCCcEEEcCCCCHHHHHHHHHHh
Q 002299 333 DKQVLSN-------CRVDQIYDVKELVDVDALKLFSRC 363 (940)
Q Consensus 333 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 363 (940)
....-.. ...-..+.++..+.++..+++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 3332110 112246789999999999988754
No 162
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.66 E-value=0.00014 Score=78.00 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=61.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCch------hhhHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFP------YIILNF 288 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~------~~~~~~ 288 (940)
..++|+|++|+|||||++.+++.+... |+..+|+..+++. ...+.++++.+...+.....+.... ....+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 468999999999999999999977554 8888998775432 2467788887755443222111111 111111
Q ss_pred HHh-hhcCCceEEEEeCCCChHH
Q 002299 289 QSK-RFSCKKVLIVFDDVTHLKQ 310 (940)
Q Consensus 289 l~~-~l~~~~~LlVlDdv~~~~~ 310 (940)
... +-++++++|++|++.....
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHHH
Confidence 222 2367999999999976544
No 163
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.65 E-value=0.0021 Score=67.02 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=100.4
Q ss_pred CCCccchhhhHHHHHHHhhcCCCC-eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHH
Q 002299 191 NKDLVGVECRIKEIELLLRTGSAG-VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLL 269 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 269 (940)
.+.+.+|+.++..+..++...+.. +..|.|+|..|.|||.+.+++.+... ...+|+.++. ....+.+..+++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~e----cft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVE----CFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHH----hccHHHHHHHHH
Confidence 467899999999999999766553 34568999999999999999998663 2457887643 355666777777
Q ss_pred HHhh-CCCCC---C---CchhhhHHHHHh--hh--cCCceEEEEeCCCChHHHHH-----HHcccCCCCCCcEEEEEeCC
Q 002299 270 STLL-DDRNV---K---NFPYIILNFQSK--RF--SCKKVLIVFDDVTHLKQIEF-----LIGRLDWFASGSRIIITTRD 333 (940)
Q Consensus 270 ~~~~-~~~~~---~---~~~~~~~~~l~~--~l--~~~~~LlVlDdv~~~~~~~~-----l~~~l~~~~~gs~iiiTtR~ 333 (940)
.+.. .+.+. . .+..+....+.+ .. +++.++|||||++...+.+. +.....-.....-+|+++-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 7763 22111 1 111122222322 11 24689999999977655221 11100001122334444432
Q ss_pred hh---hhhhCCCC--cEEEcCCCCHHHHHHHHHHhh
Q 002299 334 KQ---VLSNCRVD--QIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 334 ~~---~~~~~~~~--~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
.. -...++.. .++..+.-+.+|..+++.+.-
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 21 12112332 356788899999999886543
No 164
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.65 E-value=0.00012 Score=67.29 Aligned_cols=89 Identities=21% Similarity=0.408 Sum_probs=46.5
Q ss_pred ccEEEcCcccccCCcchHHHHHHHHhC-------CCcE-E---------ecC-CCCCCCcchHHHHHHHHhcceEEEEec
Q 002299 22 YDVFLSFRGEDTRGNFTSHLFSALSKK-------HIET-F---------IDD-QLIRGDEISQSLLDAIEASTISVIIFS 83 (940)
Q Consensus 22 ~dvFis~~~~d~~~~f~~~l~~~L~~~-------g~~~-f---------~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S 83 (940)
|.|||||++.|.. .....|...+... .+.. | .+. +....+.|...|.++|..|.++||+++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6899999998863 3666676677663 2221 1 122 333445789999999999999999999
Q ss_pred CCccchhhhHHHHHHHHHhhccCCCEEEEEEc
Q 002299 84 EGYASSKWCLDELLKIIDCKNNSGQMVIPVFY 115 (940)
Q Consensus 84 ~~y~~s~~cl~El~~~~~~~~~~~~~v~pvf~ 115 (940)
++-..|.|+..|+..+++ .+..|+-|-.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence 999999999999998775 3345555543
No 165
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.8e-05 Score=54.17 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=17.7
Q ss_pred CccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccC
Q 002299 818 SLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREV 856 (940)
Q Consensus 818 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l 856 (940)
+|++|++++|++.+ +|..+.++++|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555443 343445555555555555554443
No 166
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.63 E-value=0.0016 Score=67.14 Aligned_cols=198 Identities=11% Similarity=0.082 Sum_probs=110.6
Q ss_pred CCccchhh---hHHHHHHHhhcCC-CCeeEEEEEecCCchhhHHHHHHHHHhhccccc------eEEEecchhhhccCCH
Q 002299 192 KDLVGVEC---RIKEIELLLRTGS-AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEG------SYFAHNVREAQETGGL 261 (940)
Q Consensus 192 ~~~vGr~~---~~~~l~~~l~~~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~ 261 (940)
+.+||-.. .++.|.+++.... .+.+-+.|+|.+|.|||++++++.+.+...++. ++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 45666433 3556666666432 345669999999999999999999866444432 22222 2445677
Q ss_pred HHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC-CceEEEEeCCCChH-----HHHHHHcccCCC---CCCcEEEEEeC
Q 002299 262 AHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC-KKVLIVFDDVTHLK-----QIEFLIGRLDWF---ASGSRIIITTR 332 (940)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~-----~~~~l~~~l~~~---~~gs~iiiTtR 332 (940)
..+...++..+...-..............+.++. +-=+||+|++.+.- +-..++..+... -.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 8888999988876654444444444444444443 33389999996631 122222222111 22234555555
Q ss_pred ChhhhhhC-----CCCcEEEcCCCCHH-HHHHHHHHhh--cC-CCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 333 DKQVLSNC-----RVDQIYDVKELVDV-DALKLFSRCA--FG-EDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 333 ~~~~~~~~-----~~~~~~~l~~L~~~-ea~~Lf~~~~--~~-~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
+...+-.. ....++.++....+ |...|+.... .. .....-...+++..|...++|+.--+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 33211111 11245667766655 3444443221 11 111122346788999999999865443
No 167
>CHL00176 ftsH cell division protein; Validated
Probab=97.62 E-value=0.0008 Score=78.43 Aligned_cols=172 Identities=17% Similarity=0.168 Sum_probs=96.0
Q ss_pred CCCccchhhhHHHHHHHh---hcC-------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 191 NKDLVGVECRIKEIELLL---RTG-------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l---~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
-.+++|.+...+++.+.+ ... ....+-|.++|++|+|||++|++++......| +....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~is~------- 249 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FSISG------- 249 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----eeccH-------
Confidence 356788877766665543 221 11244589999999999999999998653222 21110
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----------------HHHHHHcccCCC--C
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----------------QIEFLIGRLDWF--A 322 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~ 322 (940)
..+.... .+ .........+.+.....+++|++|+++... .+..++..+... .
T Consensus 250 -s~f~~~~----~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 250 -SEFVEMF----VG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred -HHHHHHh----hh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 0011000 00 011122333444445678999999996431 133444333222 2
Q ss_pred CCcEEEEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcC
Q 002299 323 SGSRIIITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKG 387 (940)
Q Consensus 323 ~gs~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 387 (940)
.+-.||.||........ ...+..+.++..+.++-.+++..++...... .......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 34556666655433221 1345678999999999999998887432211 12234567777776
No 168
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.0014 Score=70.94 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=79.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
...+.|||..|.|||.|++++.+...+..+...++....+ .....+...+.. ...+.+++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se----~f~~~~v~a~~~-------------~~~~~Fk~~y- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE----DFTNDFVKALRD-------------NEMEKFKEKY- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH----HHHHHHHHHHHh-------------hhHHHHHHhh-
Confidence 4569999999999999999999988777764433332111 111222222211 1123344443
Q ss_pred CCceEEEEeCCCChHH----HHHHHcccCCC-CCCcEEEEEeCCh---------hhhhhCCCCcEEEcCCCCHHHHHHHH
Q 002299 295 CKKVLIVFDDVTHLKQ----IEFLIGRLDWF-ASGSRIIITTRDK---------QVLSNCRVDQIYDVKELVDVDALKLF 360 (940)
Q Consensus 295 ~~~~LlVlDdv~~~~~----~~~l~~~l~~~-~~gs~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf 360 (940)
.-=++++||++.... -+.+...+... ..|..||+|++.. .+...+...-++++++.+.+.....+
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 223889999854221 22222222211 3444899999643 22223345578999999999999999
Q ss_pred HHhhcC
Q 002299 361 SRCAFG 366 (940)
Q Consensus 361 ~~~~~~ 366 (940)
.+++..
T Consensus 254 ~kka~~ 259 (408)
T COG0593 254 RKKAED 259 (408)
T ss_pred HHHHHh
Confidence 887643
No 169
>PRK08116 hypothetical protein; Validated
Probab=97.60 E-value=0.00046 Score=71.91 Aligned_cols=102 Identities=24% Similarity=0.271 Sum_probs=55.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
..+.|+|.+|+|||.||.++++.+..+...++|+.. ..+...+........ ... ...+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~----------~~ll~~i~~~~~~~~--~~~----~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF----------PQLLNRIKSTYKSSG--KED----ENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH----------HHHHHHHHHHHhccc--ccc----HHHHHHHhcC
Confidence 348899999999999999999987665444555542 223333332222111 111 1122233333
Q ss_pred CceEEEEeCCC--ChHHH--HHHHcccCC-CCCCcEEEEEeCCh
Q 002299 296 KKVLIVFDDVT--HLKQI--EFLIGRLDW-FASGSRIIITTRDK 334 (940)
Q Consensus 296 ~~~LlVlDdv~--~~~~~--~~l~~~l~~-~~~gs~iiiTtR~~ 334 (940)
-. ||||||+. ....| +.+...+.. ...+..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33 89999993 22222 222222221 13556789998743
No 170
>CHL00181 cbbX CbbX; Provisional
Probab=97.60 E-value=0.0029 Score=66.67 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=71.8
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhcc-c-cceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKH-F-EGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
.+.++|++|+||||+|+.+++..... + ...-|+.+.. ..+ .....+.. .......+.+.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~--------~~l----~~~~~g~~-----~~~~~~~l~~a-- 121 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR--------DDL----VGQYIGHT-----APKTKEVLKKA-- 121 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH--------HHH----HHHHhccc-----hHHHHHHHHHc--
Confidence 47899999999999999998865321 1 1111332211 111 11121111 01111222222
Q ss_pred CCceEEEEeCCCCh-----------HHHHHHHcccCCCCCCcEEEEEeCChhhhhh--------CCCCcEEEcCCCCHHH
Q 002299 295 CKKVLIVFDDVTHL-----------KQIEFLIGRLDWFASGSRIIITTRDKQVLSN--------CRVDQIYDVKELVDVD 355 (940)
Q Consensus 295 ~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~--------~~~~~~~~l~~L~~~e 355 (940)
..-+|++|+++.. +..+.+...+.....+.+||+++........ -.....+.+++++.+|
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 2348999999642 2344454444434455677777754332111 1234679999999999
Q ss_pred HHHHHHHhhc
Q 002299 356 ALKLFSRCAF 365 (940)
Q Consensus 356 a~~Lf~~~~~ 365 (940)
..+++.+.+-
T Consensus 201 l~~I~~~~l~ 210 (287)
T CHL00181 201 LLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHH
Confidence 9999887763
No 171
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.59 E-value=0.00076 Score=77.59 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=93.6
Q ss_pred CCCCccchhhhHHHHHHHhh---c-------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 190 DNKDLVGVECRIKEIELLLR---T-------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~---~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
.-++++|.+...+++.+++. . +....+-+.++|++|+|||++|++++......| +....
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~i~~------ 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSISG------ 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----eeccH------
Confidence 34568888877666654432 1 112234588999999999999999998653322 11100
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----------------HHHHHHcccCCC--
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----------------QIEFLIGRLDWF-- 321 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~-- 321 (940)
..+... ..+. ....+...+.......+.+|++|+++... .+..++..+...
T Consensus 122 --~~~~~~----~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 --SDFVEM----FVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHHHHH----Hhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 011110 0000 11122233333334567899999985421 123333333222
Q ss_pred CCCcEEEEEeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC
Q 002299 322 ASGSRIIITTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 322 ~~gs~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 388 (940)
..+-.||.||....... ....+..+.++..+.++..+++..+..+..... .....++++.+.|.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~ 259 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGF 259 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCC
Confidence 23344566665443211 123456889999999999999987764322211 11234677777763
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.58 E-value=0.00053 Score=63.45 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEecCCchhhHHHHHHHHHhh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 173
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0013 Score=76.59 Aligned_cols=187 Identities=13% Similarity=0.059 Sum_probs=102.6
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc-cc-cc-eEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK-HF-EG-SYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f-~~-~~~~~~~~~~~~~~~~~~l~ 265 (940)
....++||.+...+.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+.. +. .. -|-.+ ...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c------------~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC------------PPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc------------HHH
Confidence 345689999999999999887542 2456789999999999999999986531 11 00 00000 000
Q ss_pred HHHHHH-------hhCCC-CCCCchhhhHHHHHhh-hcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEe-CC
Q 002299 266 QQLLST-------LLDDR-NVKNFPYIILNFQSKR-FSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITT-RD 333 (940)
Q Consensus 266 ~~l~~~-------~~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTt-R~ 333 (940)
..+... +.+.. ...++..++.+.+... ..+++=++|+|+++... ..+.++..+....+...+|++| ..
T Consensus 80 ~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred HHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 000000 00000 0000111111111111 12344488999997654 3555655554444566666554 44
Q ss_pred hhhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChh
Q 002299 334 KQVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPL 390 (940)
Q Consensus 334 ~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (940)
..+.... .....+++.+++.++....+...+-.... .-..+.+..|++.++|..-
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 160 HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMR 215 (576)
T ss_pred hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHH
Confidence 4443322 23357889999999988888765532221 1223556778888888653
No 174
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.55 E-value=0.0011 Score=73.35 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=93.5
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCC
Q 002299 199 CRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNV 278 (940)
Q Consensus 199 ~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 278 (940)
.-+.++.+.+... ..++.|.|+-++||||+++.+.....+. .+++......... ..+ .
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~---~~l-~------------ 81 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR---IEL-L------------ 81 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch---hhH-H------------
Confidence 3344444444322 2289999999999999997776655444 4454321111111 111 0
Q ss_pred CCchhhhHHHHHhhhcCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhhhh------CCCCcEEEcCCCC
Q 002299 279 KNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVLSN------CRVDQIYDVKELV 352 (940)
Q Consensus 279 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~------~~~~~~~~l~~L~ 352 (940)
+....+.+.-..++..++||.|.....|+.....+...++. +|++|+-+...... .|....+++-||+
T Consensus 82 -----d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 82 -----DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred -----HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 11111111111177899999999999998887776655665 89988876644322 1445688999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 353 DVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 353 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
-.|-..+-...+ ... .... .-+-.-..||.|-++..
T Consensus 156 F~Efl~~~~~~~----~~~-~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 156 FREFLKLKGEEI----EPS-KLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred HHHHHhhccccc----chh-HHHH-HHHHHHHhCCCcHHHhC
Confidence 999876543000 000 1111 12222356899988654
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00079 Score=80.02 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=84.6
Q ss_pred CCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-c-----cceEEEecchhhhccCCHHHH
Q 002299 191 NKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-F-----EGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~l 264 (940)
.+.++||+.++.++.+.|.... ..-+.|+|++|+|||++|+.+++++... . +..+|.... .
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~-- 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------G-- 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------H--
Confidence 3569999999999999887632 2335689999999999999999865332 1 223332111 1
Q ss_pred HHHHHHHhhCCCCCCCchhhhHH-HHHhhhcCCceEEEEeCCCCh----------HHHHHHHcccCCCCCCcEEEEEeCC
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILN-FQSKRFSCKKVLIVFDDVTHL----------KQIEFLIGRLDWFASGSRIIITTRD 333 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iiiTtR~ 333 (940)
.++. +.. .....+.... .+...-+.++.+|++|+++.. .+...++.++.. ...-++|-+|..
T Consensus 252 --~lla---G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~ 324 (758)
T PRK11034 252 --SLLA---GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_pred --HHhc---ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCCh
Confidence 1110 000 0011111111 222222346779999999642 122222222221 223345555543
Q ss_pred hhhhhh-------CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 334 KQVLSN-------CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 334 ~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
.+.... ...-..+.|++.+.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 332111 1122579999999999999987653
No 176
>PRK08181 transposase; Validated
Probab=97.52 E-value=0.00059 Score=70.62 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=27.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.-+.|+|++|+|||.||.++++...++.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 34899999999999999999997765544556654
No 177
>PRK12377 putative replication protein; Provisional
Probab=97.51 E-value=0.00029 Score=71.91 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=29.5
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
...+.|+|.+|+|||+||.++++.+....-.+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 356889999999999999999998876655566665
No 178
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.51 E-value=0.0038 Score=63.65 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
+..+.++......+...+.++|.+|+|||+||.++++.+..+-..++++.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44444444332223346889999999999999999998766545555554
No 179
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.51 E-value=0.0092 Score=59.57 Aligned_cols=53 Identities=23% Similarity=0.484 Sum_probs=40.0
Q ss_pred CCCCCCccchhhhHHHHHH----HhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 188 QSDNKDLVGVECRIKEIEL----LLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~----~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
+...+.++|.+.+.+.|.+ ++. +. ...-|.+||..|.|||++++++.+++..+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~-G~-pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ-GL-PANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc-CC-CCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 4455789999999888754 332 22 33457899999999999999999977654
No 180
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.00071 Score=78.19 Aligned_cols=53 Identities=25% Similarity=0.269 Sum_probs=43.0
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCC---CCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGS---AGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
|....+++|-+..++++..++.... ...+++.|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556789999999999999887532 2346799999999999999999998653
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00041 Score=65.14 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=27.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
+.+.|+|++|+||||+|+.++..+......++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 46899999999999999999997765543445543
No 182
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0023 Score=66.25 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=97.0
Q ss_pred CCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 192 KDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
..+=|-+..+++|.+.... +-+.++-|.+||++|.|||-||++++++....| +.+++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH------
Confidence 3444677777777655432 113455689999999999999999999765443 444322
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh-cCCceEEEEeCCCChH--------------H--HHHHHcccCCCCC
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF-SCKKVLIVFDDVTHLK--------------Q--IEFLIGRLDWFAS 323 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~--------------~--~~~l~~~l~~~~~ 323 (940)
++.++.+ ++. ..+++.+.+.. ...+..|.+|.++... | +-+++..+..+.+
T Consensus 220 --ElVqKYi----GEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 --ELVQKYI----GEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred --HHHHHHh----ccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 1222221 111 01222222222 3467899999885421 1 3345556655544
Q ss_pred --CcEEEEEeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhhcCCCC-CCchhhHHHHHHHHHhcCCh
Q 002299 324 --GSRIIITTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCAFGEDD-PTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 324 --gs~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 389 (940)
.-+||..|-..+++. .-..+..++++.-+.+.-.+.|.-|+.+-.. ..-++ +.+++.+.|.-
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 457787776544432 2345678899977777777788777644222 22233 34555666553
No 183
>PRK06921 hypothetical protein; Provisional
Probab=97.42 E-value=0.00029 Score=73.25 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=29.5
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEec
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHN 251 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~ 251 (940)
...+.++|..|+|||+||.++++.+.++ ...++|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4568999999999999999999987665 445566653
No 184
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.41 E-value=0.00017 Score=69.99 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=26.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.-+.|+|..|+|||.||.++++....+--.+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 45889999999999999999987655444456664
No 185
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=1.6e-05 Score=69.96 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=18.5
Q ss_pred CCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc
Q 002299 817 ESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 817 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
+.++.|++++|.+.+ +|..+..++.|+.|+++.|++...|
T Consensus 77 ~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 77 PTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred chhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccccch
Confidence 344444444444432 4444444444555555554444333
No 186
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0049 Score=65.46 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=61.5
Q ss_pred CCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCCh-hhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 002299 295 CKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDK-QVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDP 370 (940)
Q Consensus 295 ~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 370 (940)
+++=++|+|+++.... ...++..+-...+++.+|++|... .+.... .....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 3455899999987543 455555555446677777777654 344332 234678999999999998887531 1
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHH
Q 002299 371 TASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 371 ~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
. ...+..++..++|.|+....+
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 122567889999999876544
No 187
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.38 E-value=0.00019 Score=68.02 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=55.3
Q ss_pred cEEEcCccccc-CCcchHHHHHHHHhC-CCcEEecC-CCC--CCCcchHHHHHHHHhcceEEEEecCCc
Q 002299 23 DVFLSFRGEDT-RGNFTSHLFSALSKK-HIETFIDD-QLI--RGDEISQSLLDAIEASTISVIIFSEGY 86 (940)
Q Consensus 23 dvFis~~~~d~-~~~f~~~l~~~L~~~-g~~~f~d~-~~~--~g~~~~~~l~~ai~~s~~~i~v~S~~y 86 (940)
-|||||+.... ...+|..|++.|++. |+.|.+|. +.. .+..+..+|.++++++..+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999988543 347899999999999 99999998 664 377899999999999999999999755
No 188
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=4.8e-05 Score=75.83 Aligned_cols=181 Identities=15% Similarity=0.067 Sum_probs=91.4
Q ss_pred CccEEecCCCCCcc---cCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhcccccc
Q 002299 715 FLKDLDLESCGIEE---LPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIK 791 (940)
Q Consensus 715 ~L~~L~L~~~~i~~---lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 791 (940)
.+++|+|.+|.|+. +...+.++|.|+.|+|+.|++...+-..=..+.+|+.|-|.+..... ......+..+
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w--~~~~s~l~~l---- 145 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW--TQSTSSLDDL---- 145 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh--hhhhhhhhcc----
Confidence 46777777777773 33335677777777777766543322111234567777665532110 0111122222
Q ss_pred CCCceEEEcCCCCCCccc--cCccCC-CCCccEEeeeCCCCCC--CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhc
Q 002299 792 RQALSKLELNNCSRLESF--PSSLCM-FESLASLKIIDCPRLD--GLPDELGNLKALEELTVEGTAMREVPESLGQLLES 866 (940)
Q Consensus 792 ~~~L~~L~L~~~~~~~~~--~~~~~~-l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~ 866 (940)
|.++.|.++.|..-... ...... -+.+++|..-.|.... .....-.-+|++..+.+..|+++....
T Consensus 146 -P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~-------- 216 (418)
T KOG2982|consen 146 -PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS-------- 216 (418)
T ss_pred -hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh--------
Confidence 55556666655321100 000000 1223333333332211 000001224567777777777765432
Q ss_pred cCccccCCCCCCEEeccCCCCCcc-cCCCcCCchhhhhhhccCCcc
Q 002299 867 LPSSLYKSKCLQDSYLDDCPNLHR-LPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 867 lp~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~ 911 (940)
...+..+|.+-.|+|+.|++-.- --+.+..+++|..|.+++|++
T Consensus 217 -ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 217 -EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred -cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 12345677777888888876431 123677888888888998864
No 189
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.34 E-value=0.0027 Score=76.90 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=93.0
Q ss_pred CCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 191 NKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
.+++.|.+..++++.+++.. +-...+.+.|+|++|+|||++|+++++.....| +.+.. ...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~~-~~i---- 248 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISING-PEI---- 248 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEec-HHH----
Confidence 34588999999888776632 112345688999999999999999998764433 22221 110
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH-------------HHHHHHcccCCC-CCCc
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-------------QIEFLIGRLDWF-ASGS 325 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~-~~gs 325 (940)
. .... ......+...+.......+.+|++|+++... ....+...+... ..+.
T Consensus 249 -----~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 249 -----M----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -----h----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 0 0000 0011122223333334567899999985421 123333333222 2233
Q ss_pred EEEE-EeCChh-hhhhC----CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh
Q 002299 326 RIII-TTRDKQ-VLSNC----RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 326 ~iii-TtR~~~-~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 389 (940)
.++| ||.... +...+ .....+.++..+.++..+++..+.-+..... ......+++.+.|.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 3444 444332 11111 2345678888898988888875542211111 112456777777754
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.0013 Score=66.29 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=39.6
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH-h-hccccceEE
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK-M-SKHFEGSYF 248 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~-~-~~~f~~~~~ 248 (940)
..+.+|......+..++.. ..+|.+.|++|.|||+||.+++.. + .+.|...+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4567788888888877753 248999999999999999999874 3 444554444
No 191
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.31 E-value=0.0025 Score=71.96 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=82.8
Q ss_pred CCccchhhhHHHHHHHh---hc-----CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHH
Q 002299 192 KDLVGVECRIKEIELLL---RT-----GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAH 263 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l---~~-----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 263 (940)
.++.|.+...+.+.+.. .. +-...+-|.++|++|.|||.+|+++++...-.| +-+.. ..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~~-~~--------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLDV-GK--------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEEh-HH---------
Confidence 46778776665554321 11 112345688999999999999999999764332 11111 00
Q ss_pred HHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH--------------HHHHHcccCCCCCCcEEEE
Q 002299 264 LRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ--------------IEFLIGRLDWFASGSRIII 329 (940)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------------~~~l~~~l~~~~~gs~iii 329 (940)
+.....+ .....+.+.+...-...+++|++|+++..-. +..+...+.....+.-||.
T Consensus 295 ----l~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 ----LFGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----hcccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 1000000 0111112222222234789999999864210 1222222222233444566
Q ss_pred EeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhhcC
Q 002299 330 TTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCAFG 366 (940)
Q Consensus 330 TtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 366 (940)
||....... ....+..+.++.-+.++-.++|..+..+
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 775543221 1245578899999999999999887643
No 192
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.31 E-value=2.3e-05 Score=76.98 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=40.1
Q ss_pred ccccCCCceeeCCCCCCCCcCCC-----cccCCCccEEeccCCCCCc----ccc-------ccccCCCcccEEEecCCCC
Q 002299 618 VQNLVNLKEIDLSDSKQLTKLPD-----LSLARNLESLDLWGCSSLM----ETH-------SSIQYLNKLAFLYLVSCES 681 (940)
Q Consensus 618 ~~~l~~L~~L~L~~~~~~~~~~~-----l~~l~~L~~L~L~~~~~~~----~~~-------~~~~~l~~L~~L~l~~~~~ 681 (940)
+..+..+..++||+|.+-+.... +.+-.+|+..+++.- .++ .++ ..+-++|+|+..+|++|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34467778888888876554331 445567777777652 221 122 2445667777777777655
Q ss_pred CcccCC
Q 002299 682 LRSLPH 687 (940)
Q Consensus 682 ~~~l~~ 687 (940)
....|.
T Consensus 105 g~~~~e 110 (388)
T COG5238 105 GSEFPE 110 (388)
T ss_pred Ccccch
Confidence 544443
No 193
>PRK09183 transposase/IS protein; Provisional
Probab=97.28 E-value=0.0011 Score=68.82 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=25.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
..+.|+|++|+|||+||..++......-..+.|+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45789999999999999999886544433344443
No 194
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.00028 Score=66.77 Aligned_cols=62 Identities=24% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCC-CCccCCCCCCCCEEEccCCCCc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDG-LPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
++|.+|.+++|.++..-|..-..+|+|+.|.+.+|++... .-+-+..+|.|++|.+-+|++.
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 5556666666555555444334445566666665555431 1122445555556655555544
No 195
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.26 E-value=0.00087 Score=71.63 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=29.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
.-+.++|..|+|||+||.++++.+..+--.++|+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 568999999999999999999987665445666653
No 196
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.25 E-value=0.00035 Score=49.75 Aligned_cols=36 Identities=33% Similarity=0.472 Sum_probs=26.9
Q ss_pred CccEEecCCCCCcccCccccccCCCcEEEecCCCCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRL 750 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~ 750 (940)
+|++|++++|.|+.+|+.+.+|++|+.|++++|++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 377888888888888877888888888888887654
No 197
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=7.4e-05 Score=87.72 Aligned_cols=160 Identities=17% Similarity=0.062 Sum_probs=99.9
Q ss_pred ccCCCcEEEecCCCCCc-ccccccC-CCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCc
Q 002299 735 CLYNLRSIDLLNCTRLE-YIASSIF-TLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSS 812 (940)
Q Consensus 735 ~l~~L~~L~l~~~~~~~-~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 812 (940)
.-.+|+.|++++..... ..|..++ .+|+|+.|.+++-.... .++..- ...+|+|..||+|+++.... ..
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~l-----c~sFpNL~sLDIS~TnI~nl--~G 190 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQL-----CASFPNLRSLDISGTNISNL--SG 190 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHH-----hhccCccceeecCCCCccCc--HH
Confidence 34789999998855432 2233333 47999999998732211 111111 11338999999999876544 56
Q ss_pred cCCCCCccEEeeeCCCCCC-CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCccc
Q 002299 813 LCMFESLASLKIIDCPRLD-GLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRL 891 (940)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~ 891 (940)
++.+++|+.|.+.+=.+.. ..-..+.+|++|+.||+|......-+.-+... -+.-..||.|+.|+.|+..+.+.+
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY----lec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY----LECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHH----HHhcccCccccEEecCCcchhHHH
Confidence 7889999999888866554 22235678899999999987666554222211 233345888999999987765543
Q ss_pred CC-CcCCchhhhhhhcc
Q 002299 892 PD-ELGSLEALKRLYAE 907 (940)
Q Consensus 892 p~-~~~~l~~L~~L~l~ 907 (940)
-+ .+..-++|+.+-+-
T Consensus 267 le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHHhCccHhhhhhh
Confidence 22 33344555555544
No 198
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.24 E-value=0.0056 Score=62.87 Aligned_cols=173 Identities=19% Similarity=0.131 Sum_probs=96.4
Q ss_pred CCCccchhhhHHHHHHHhhcC--CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhh--ccCCHHHHHH
Q 002299 191 NKDLVGVECRIKEIELLLRTG--SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQ--ETGGLAHLRQ 266 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~l~~ 266 (940)
-..++|-.++..++..++... -++..-|.|+|+.|.|||+|.-....+ .+.|...+.+.-..+.- ++-.+..+.+
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 457899999999998888642 123345889999999999988776665 44555444443332221 1223444555
Q ss_pred HHHHHhhCCCCCCCchhhhHHHHHhhhc------CCceEEEEeCCCChH----H--HHHHHcc-cCCCCCCcEEEEEeCC
Q 002299 267 QLLSTLLDDRNVKNFPYIILNFQSKRFS------CKKVLIVFDDVTHLK----Q--IEFLIGR-LDWFASGSRIIITTRD 333 (940)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~~----~--~~~l~~~-l~~~~~gs~iiiTtR~ 333 (940)
++..+.........+..+....+...++ +.++.+|+|.++-.. | +-.+... -....|-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 5544443322222222233333333332 246899998875422 2 2222211 1123566778899995
Q ss_pred hh-------hhhhCCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 334 KQ-------VLSNCRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 334 ~~-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
.- |-.......++-.+.++-++...++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 42 22222233466667777777777776554
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.24 E-value=0.0033 Score=60.83 Aligned_cols=50 Identities=26% Similarity=0.310 Sum_probs=40.6
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
....++||-++.++.+...... +..+-+.|.||+|+||||-+..+++++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 3456789999999998877654 3466788999999999999999998653
No 200
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=2.4e-05 Score=68.89 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=40.3
Q ss_pred CCCccEEeeeCCCCCCCCCccCC-CCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCC
Q 002299 816 FESLASLKIIDCPRLDGLPDELG-NLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDE 894 (940)
Q Consensus 816 l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~ 894 (940)
...|...+|++|.+.. +|..|. ..+.++.|++++|.|.++|.. +..++.|+.|+++.|++.. .|..
T Consensus 52 ~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-----------~Aam~aLr~lNl~~N~l~~-~p~v 118 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEE-----------LAAMPALRSLNLRFNPLNA-EPRV 118 (177)
T ss_pred CceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHH-----------HhhhHHhhhcccccCcccc-chHH
Confidence 3445555555555443 333332 233555555555555544432 2345555555555555443 2343
Q ss_pred cCCchhhhhhhccCCcc
Q 002299 895 LGSLEALKRLYAEGKCS 911 (940)
Q Consensus 895 ~~~l~~L~~L~l~~n~~ 911 (940)
+..|.+|..|+..+|..
T Consensus 119 i~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENAR 135 (177)
T ss_pred HHHHHhHHHhcCCCCcc
Confidence 44455555555555543
No 201
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.21 E-value=0.0009 Score=73.14 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=42.8
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc--cccceEEEec
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK--HFEGSYFAHN 251 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~~~~ 251 (940)
.++++.+..++.+...+..+ +.+.++|++|+|||++|+++++.+.. .+..+.|+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtF 232 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQF 232 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEee
Confidence 45777888888888888643 34889999999999999999997643 3555556553
No 202
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.19 E-value=0.0043 Score=75.19 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=94.4
Q ss_pred CCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 192 KDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
..+.|.+...++|.+.+.. +-...+-+.++|++|.|||++|+++++.....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~~-~------- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVRG-P------- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEeh-H-------
Confidence 4577888877777665531 112344588999999999999999999765433 11111 0
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--------------HHHHHHcccCCC--CCC
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--------------QIEFLIGRLDWF--ASG 324 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~~--~~g 324 (940)
.++....+ .....+...+...-...+.+|++|+++... ....++..+... ..+
T Consensus 522 ------~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 ------EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ------HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11111111 111122222333334567899999985421 133344433322 234
Q ss_pred cEEEEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC
Q 002299 325 SRIIITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 325 s~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 388 (940)
.-||.||........ -..+..+.++..+.++..++|..+..+...... .-...+++.+.|.
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~ 656 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGY 656 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCC
Confidence 445666655433221 134578899999999999999766533221111 1134566666664
No 203
>PRK06526 transposase; Provisional
Probab=97.15 E-value=0.00048 Score=70.93 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=25.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEE
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYF 248 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~ 248 (940)
+-+.|+|++|+|||+||.+++.....+--.+.|
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 458999999999999999999876544323334
No 204
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0024 Score=65.85 Aligned_cols=37 Identities=30% Similarity=0.222 Sum_probs=28.8
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
...-+.++|.+|+|||.||.++++++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3445889999999999999999998884434455554
No 205
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0016 Score=73.55 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=88.9
Q ss_pred CCccchhhhHHHHHHHhhcC----CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHH
Q 002299 192 KDLVGVECRIKEIELLLRTG----SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
.+-+|.++-.+++.++|.-. .-.-.+++++|++|||||.|++.+++-+...|-... +-.+++. ..++.=.+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDE---AEIRGHRRT 398 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDE---AEIRGHRRT 398 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccH---HHhcccccc
Confidence 45689999899998877532 223479999999999999999999998877763221 1122211 111100011
Q ss_pred HHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH------HHHHHcccCCC-------------CCCcEEE
Q 002299 268 LLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ------IEFLIGRLDWF-------------ASGSRII 328 (940)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~l~~~-------------~~gs~ii 328 (940)
-.. .-+..+++.+++. +-+.-|++||.++.... -..++..+... -.=|.|+
T Consensus 399 YIG---------amPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 399 YIG---------AMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccc---------cCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 110 1111223333322 33556999999865322 11222211110 1124443
Q ss_pred -EEeCCh-h-h-hhhCCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 329 -ITTRDK-Q-V-LSNCRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 329 -iTtR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
|||-+. + + .+.+...+++++.+.+++|-.+.-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 455432 1 1 2223456899999999999988887765
No 206
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.12 E-value=0.00018 Score=70.87 Aligned_cols=212 Identities=17% Similarity=0.066 Sum_probs=124.0
Q ss_pred CCCCCEEEecCCCCCCcCCC----CC--cCCccEEecCCCCCc----ccCc-------cccccCCCcEEEecCCCCCccc
Q 002299 691 SESLFELRLSGCTSLKRFPK----IS--SCFLKDLDLESCGIE----ELPS-------SIECLYNLRSIDLLNCTRLEYI 753 (940)
Q Consensus 691 l~~L~~L~l~~~~~l~~~~~----~~--~~~L~~L~L~~~~i~----~lp~-------~~~~l~~L~~L~l~~~~~~~~~ 753 (940)
+..+..++||||..-..-.. .. ..+|+..+++.--.. ++|. .+-++|.|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 67788889999864321111 11 114666666543222 3332 3456889999999998876665
Q ss_pred ccc----cCCCCCCcEEEecCCCCCCcCCCCCcchh----cc----ccccCCCceEEEcCCCCCCccc----cCccCCCC
Q 002299 754 ASS----IFTLKSLESIRISKCSNLRKFPEIPSCII----DE----AGIKRQALSKLELNNCSRLESF----PSSLCMFE 817 (940)
Q Consensus 754 ~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~----~~~~~~~L~~L~L~~~~~~~~~----~~~~~~l~ 817 (940)
|.. +.+-..|.+|.+++|..- |....-++ .+ ....-|.|++.....|.+.... ...+..-.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG---p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG---PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC---ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 543 455678999999887433 21111111 11 0112377888888888653311 11222336
Q ss_pred CccEEeeeCCCCCCC-----CCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC
Q 002299 818 SLASLKIIDCPRLDG-----LPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 818 ~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
+|+.+.+..|.+... .-..+..+.+|+.|+|..|.++...+.. +-..+| ..+.|+.|.+.+|-+...-.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~--La~al~----~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY--LADALC----EWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH--HHHHhc----ccchhhhccccchhhccccH
Confidence 789999988876431 1123456789999999999887544322 122333 44668999999996653211
Q ss_pred C----Cc--CCchhhhhhhccCCcc
Q 002299 893 D----EL--GSLEALKRLYAEGKCS 911 (940)
Q Consensus 893 ~----~~--~~l~~L~~L~l~~n~~ 911 (940)
. .| ...|+|..|....|..
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhh
Confidence 1 11 1346777777777754
No 207
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.016 Score=62.78 Aligned_cols=159 Identities=12% Similarity=0.058 Sum_probs=86.1
Q ss_pred Cccc-hhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh-cc-ccceEEEecchhhhccCCHHHHHHHHH
Q 002299 193 DLVG-VECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS-KH-FEGSYFAHNVREAQETGGLAHLRQQLL 269 (940)
Q Consensus 193 ~~vG-r~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~ 269 (940)
.++| -+..++.+...+..+. -.+...++|+.|+||||+|+.+++.+- .. ..... +. .-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~--cg---------~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP--CG---------TCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC--CC---------cCHHHHHHh
Confidence 3556 5556677777775432 345678999999999999999998652 11 11000 00 000000000
Q ss_pred HHhh------CCCCCCCchhhhHHHHHh----hhcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCChh-h
Q 002299 270 STLL------DDRNVKNFPYIILNFQSK----RFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDKQ-V 336 (940)
Q Consensus 270 ~~~~------~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~~-~ 336 (940)
...- .........+++.+.+.. ...+++=++|+|+++.... .+.++..+....+++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 000000111222222211 1223444789999876543 5556666655567777777776543 3
Q ss_pred hhhC-CCCcEEEcCCCCHHHHHHHHHHh
Q 002299 337 LSNC-RVDQIYDVKELVDVDALKLFSRC 363 (940)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 363 (940)
.... .....+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3322 33468999999999998888653
No 208
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.10 E-value=0.0065 Score=63.49 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
++++..++..+ +-|.|.|++|+|||++|+.+++...
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 44445555432 2367999999999999999998653
No 209
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.09 E-value=0.0036 Score=66.48 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=36.1
Q ss_pred chhhhHHHHHHHhhcCC--CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 196 GVECRIKEIELLLRTGS--AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 196 Gr~~~~~~l~~~l~~~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
+|....+...+++..-. ...+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34444444444554211 12346889999999999999999998765544455654
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0036 Score=63.71 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=48.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh----hccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM----SKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQS 290 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 290 (940)
-|+|.++|++|.|||+|.+++++++ .++|.....+..- -..+..+++++ . ........+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin--------shsLFSKWFsE----S--gKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN--------SHSLFSKWFSE----S--GKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe--------hhHHHHHHHhh----h--hhHHHHHHHHHH
Confidence 4789999999999999999999954 4556665555421 12222333222 1 122334445555
Q ss_pred hhhcCCc--eEEEEeCCCCh
Q 002299 291 KRFSCKK--VLIVFDDVTHL 308 (940)
Q Consensus 291 ~~l~~~~--~LlVlDdv~~~ 308 (940)
+.+.++. +.+.+|.|+..
T Consensus 243 ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHH
Confidence 5555554 34567888653
No 211
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.08 E-value=0.034 Score=60.20 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=110.6
Q ss_pred hhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHH-HHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHH-----
Q 002299 197 VECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIA-GAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLS----- 270 (940)
Q Consensus 197 r~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~----- 270 (940)
|.+.+++|..||....+ .+|.|.|+-|+||+.|+ .++.+. .+.+.+++|-.-. ...+-..+++.+..
T Consensus 1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~~----r~~vL~IDC~~i~-~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLKD----RKNVLVIDCDQIV-KARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHhC----CCCEEEEEChHhh-hccChHHHHHHHHHhcCCC
Confidence 56678999999986544 57999999999999998 555542 2335555542211 11111222222222
Q ss_pred ------------------HhhCCCCC-CCchhh-hH-------HHHHh-----h--------------h---cCCceEEE
Q 002299 271 ------------------TLLDDRNV-KNFPYI-IL-------NFQSK-----R--------------F---SCKKVLIV 301 (940)
Q Consensus 271 ------------------~~~~~~~~-~~~~~~-~~-------~~l~~-----~--------------l---~~~~~LlV 301 (940)
.+.+.+.. ..+.+. +. ..+++ + + -.++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 12222211 111111 11 11111 0 0 11256999
Q ss_pred EeCCCCh-----------HHHHHHHcccCCCCCCcEEEEEeCChhhhhh----C--CCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 302 FDDVTHL-----------KQIEFLIGRLDWFASGSRIIITTRDKQVLSN----C--RVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 302 lDdv~~~-----------~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~----~--~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
+||+... .+|...+.. ..=.+||++|-+...... + .+.+.+.+...+.+.|.++...+.
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 9998432 123333322 455789999887644332 2 234678999999999999998887
Q ss_pred cCCCCC-------------C-----chhhHHHHHHHHHhcCChhhHHHHhhhhcC
Q 002299 365 FGEDDP-------------T-----ASYTKLTHEAVKYAKGVPLALKVLGSFLSG 401 (940)
Q Consensus 365 ~~~~~~-------------~-----~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 401 (940)
-..... . .....-....++.+||--.-|..+++.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 432110 0 123344567788889988888888888874
No 212
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.017 Score=62.75 Aligned_cols=130 Identities=20% Similarity=0.200 Sum_probs=75.6
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKR 292 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 292 (940)
.+...|.+.|++|+|||+||..++.. ..|+.+-.+.. . ..-++.+-.+ ...+.....+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSp---e-~miG~sEsaK---------------c~~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIISP---E-DMIGLSESAK---------------CAHIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeCh---H-HccCccHHHH---------------HHHHHHHHHHh
Confidence 34566889999999999999999873 57876654421 1 0111111100 00111222233
Q ss_pred hcCCceEEEEeCCCChHHH------------HHHHcccCCCCC---CcEEEEEeCChhhhhhCCC----CcEEEcCCCCH
Q 002299 293 FSCKKVLIVFDDVTHLKQI------------EFLIGRLDWFAS---GSRIIITTRDKQVLSNCRV----DQIYDVKELVD 353 (940)
Q Consensus 293 l~~~~~LlVlDdv~~~~~~------------~~l~~~l~~~~~---gs~iiiTtR~~~~~~~~~~----~~~~~l~~L~~ 353 (940)
.+..--.||+||++..-+| +.+...+....| .--|+-||....++..|+. ...|.|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 3445568999999775543 233222222222 3335567777778877653 45789999988
Q ss_pred -HHHHHHHHHh
Q 002299 354 -VDALKLFSRC 363 (940)
Q Consensus 354 -~ea~~Lf~~~ 363 (940)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6777766554
No 213
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.04 E-value=0.00094 Score=67.10 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=29.5
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.++|.|..|+||||++..+.......|+.++++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 4779999999999999999998889997776654
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.024 Score=61.02 Aligned_cols=176 Identities=14% Similarity=0.086 Sum_probs=94.0
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc-c-ccc-eEEEecc-hh--hhccCCHHHHHHHHHHHhhC
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK-H-FEG-SYFAHNV-RE--AQETGGLAHLRQQLLSTLLD 274 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~-f~~-~~~~~~~-~~--~~~~~~~~~l~~~l~~~~~~ 274 (940)
-+++.+.+..+ .-.....++|+.|+||+++|.+++..+-- + -+. .+=.+.. +. ....+++.. +..
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~--------i~p 81 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT--------LTP 81 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE--------Eec
Confidence 34555555443 23456889999999999999999986521 1 100 0000000 00 000000000 000
Q ss_pred CCC-CCCchhhhHHHHHhhh-----cCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCCh-hhhhhC-CCCc
Q 002299 275 DRN-VKNFPYIILNFQSKRF-----SCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDK-QVLSNC-RVDQ 344 (940)
Q Consensus 275 ~~~-~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~-~~~~ 344 (940)
... ..-..++..+ +.+.+ .+++=++|+|+++.... ...++..+-.-.+++.+|++|.+. .+.... ....
T Consensus 82 ~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 82 EKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred ccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 000 0111222222 22222 34555899999976543 555666555556677777776654 344332 2335
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 345 IYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
.+.+.+++.+++.+.+.... + . + .+.+..++..++|.|....
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~-~--~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV-T--M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc-C--C-C---HHHHHHHHHHcCCCHHHHH
Confidence 78999999999998886542 1 1 1 2235678899999996443
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.02 Score=61.51 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=27.9
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
+.++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4578999999999999999999987654422344443
No 216
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.02 E-value=0.00015 Score=85.21 Aligned_cols=130 Identities=22% Similarity=0.141 Sum_probs=91.0
Q ss_pred CccEEecCCCCCc--ccCccc-cccCCCcEEEecCCCCCc-ccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccc
Q 002299 715 FLKDLDLESCGIE--ELPSSI-ECLYNLRSIDLLNCTRLE-YIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGI 790 (940)
Q Consensus 715 ~L~~L~L~~~~i~--~lp~~~-~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 790 (940)
+|++|++++...- ..|..+ ..||+|+.|.+.+-.+.. .+.....++|+|..||+|+++.. .+ .++..+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl----~GIS~L--- 194 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL----SGISRL--- 194 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc----HHHhcc---
Confidence 6999999885433 222223 358999999999855432 33445678999999999997543 22 445555
Q ss_pred cCCCceEEEcCCCCCCc-cccCccCCCCCccEEeeeCCCCCCCC------CccCCCCCCCCEEEccCCCCc
Q 002299 791 KRQALSKLELNNCSRLE-SFPSSLCMFESLASLKIIDCPRLDGL------PDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 791 ~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~L~~n~l~ 854 (940)
++|+.|.+.+-.+.. ..-..+..|++|+.||+|........ -+.-..+|+|+.||.|++.+.
T Consensus 195 --knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 195 --KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred --ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 899999988876543 11224678999999999998765521 122346899999999998765
No 217
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.011 Score=66.24 Aligned_cols=189 Identities=20% Similarity=0.178 Sum_probs=105.0
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh-cc---cc--ceEEEecchhhhccCCHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS-KH---FE--GSYFAHNVREAQETGGLAH 263 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~---f~--~~~~~~~~~~~~~~~~~~~ 263 (940)
.-+++||-+.-.+.|...+..+. -..-....|+-|+||||+|+-++..+- .. .+ ..|..+ ... ......+
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I-~~g~~~D 89 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEI-NEGSLID 89 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hhh-hcCCccc
Confidence 34577999999999999887643 133466899999999999999998541 11 11 111110 000 0000111
Q ss_pred HHHHHHHHhhC-CCCCCCchhhhHHHHHhh-hcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCChh-hhh
Q 002299 264 LRQQLLSTLLD-DRNVKNFPYIILNFQSKR-FSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDKQ-VLS 338 (940)
Q Consensus 264 l~~~l~~~~~~-~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~ 338 (940)
+.. +.. .....++..++.+.++-. .+++.=+.|+|.|+-.. .+..++..+-.-......|..|++.+ +..
T Consensus 90 viE-----iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 90 VIE-----IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred chh-----hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 100 000 000112222222222211 13344489999996544 47888777665455666666666543 322
Q ss_pred h-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh
Q 002299 339 N-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 339 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 389 (940)
. ....+.|....++.++-...+...+-.... ...++...-|++..+|..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCCh
Confidence 2 234478999999999988888877743322 223345556666666643
No 218
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.059 Score=57.33 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=60.6
Q ss_pred CceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCCh-hhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 002299 296 KKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDK-QVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPT 371 (940)
Q Consensus 296 ~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 371 (940)
++=++|+|+++.... ...++..+-...+++.+|++|.+. .+.... .....+.+.+++.+++.+.+.... . .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~ 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c
Confidence 344889999977543 555666555556677776666654 444443 334688999999999999886542 1 1
Q ss_pred chhhHHHHHHHHHhcCChhhHHHH
Q 002299 372 ASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 372 ~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
....++..++|.|+....+
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH
Confidence 1346788999999876554
No 219
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.043 Score=58.48 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=94.1
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc-c-ccceEEEecchhhhccCCHHHHHHHHHHH-------
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK-H-FEGSYFAHNVREAQETGGLAHLRQQLLST------- 271 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~------- 271 (940)
.+.+.+.+..+. -.+...++|+.|+||+++|+.++..+-- . .... ..+.-.-.+.+...
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~-----------~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ-----------PCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC-----------CCCCCHHHHHHhcCCCCCEEE
Confidence 344555554332 2456789999999999999999985421 1 1000 00000000111000
Q ss_pred hhCCCCCCCchhhhHHHHHhhh-----cCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeCCh-hhhhhC-CC
Q 002299 272 LLDDRNVKNFPYIILNFQSKRF-----SCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTRDK-QVLSNC-RV 342 (940)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~-~~ 342 (940)
+..........++..+ +.+.+ .+++=++|+|+++.... ...++..+-...+++.+|++|.+. .+.... ..
T Consensus 79 i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 79 LEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 0000001111222222 22221 24445888999987543 556666655556777777777665 444332 23
Q ss_pred CcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 002299 343 DQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (940)
...+.+.+++.+++.+.+..... . . ...+...+..++|.|+..
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~---~-~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS---A-E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc---c-C---hHHHHHHHHHcCCCHHHH
Confidence 46899999999999998887641 1 1 112556778899999643
No 220
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0079 Score=67.49 Aligned_cols=149 Identities=21% Similarity=0.271 Sum_probs=84.5
Q ss_pred chhhhHHHHHHHhh-----------cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHH
Q 002299 196 GVECRIKEIELLLR-----------TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 196 Gr~~~~~~l~~~l~-----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (940)
|.++...+|.+... .+-+..+-|.++|++|.|||++|+++++.-+-.|-.+ ..
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv-----kg----------- 501 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV-----KG----------- 501 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec-----cC-----------
Confidence 46665555654332 1224567799999999999999999999766555222 10
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH-------------HHHHHHcccCCCCCCcEEEE--
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-------------QIEFLIGRLDWFASGSRIII-- 329 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~~~gs~iii-- 329 (940)
.+++....++ ....+.+.+++.-+-.+.++.||.++... .+..++..++.......|+|
T Consensus 502 -pEL~sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 502 -PELFSKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred -HHHHHHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEe
Confidence 1111111111 11122222233333356788888875422 14555555554444434443
Q ss_pred -EeCChhhhhh----CCCCcEEEcCCCCHHHHHHHHHHhhcC
Q 002299 330 -TTRDKQVLSN----CRVDQIYDVKELVDVDALKLFSRCAFG 366 (940)
Q Consensus 330 -TtR~~~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 366 (940)
|-|...+-.. -..+..+.++.-+.+...++|+.++-+
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3333333222 135678889988999999999998844
No 221
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.98 E-value=0.0029 Score=59.43 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=61.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHh----hCC------CCCCC---ch
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTL----LDD------RNVKN---FP 282 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~------~~~~~---~~ 282 (940)
..|-|++..|.||||+|...+-+...+--.+.++.-.... ...+-....+++ ..+ .+. ..... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 4678888889999999999988765553344443322221 112223333332 000 000 00000 11
Q ss_pred hhhHHHHHhhhcCCc-eEEEEeCCCChH-----HHHHHHcccCCCCCCcEEEEEeCChh
Q 002299 283 YIILNFQSKRFSCKK-VLIVFDDVTHLK-----QIEFLIGRLDWFASGSRIIITTRDKQ 335 (940)
Q Consensus 283 ~~~~~~l~~~l~~~~-~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~iiiTtR~~~ 335 (940)
....+..++.+.... =|+|||++-..- ..+.+...+....++..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122333344444444 499999984331 13333333333466789999999863
No 222
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.94 E-value=0.0011 Score=62.81 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=46.6
Q ss_pred CCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccc-cCccCC
Q 002299 737 YNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESF-PSSLCM 815 (940)
Q Consensus 737 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~ 815 (940)
.+...++|++|.+... ..|..++.|.+|.+.+|.....-|.+-..+ ++|..|.|.+|.+...- -..+..
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~--------p~l~~L~LtnNsi~~l~dl~pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFL--------PNLKTLILTNNSIQELGDLDPLAS 111 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhc--------cccceEEecCcchhhhhhcchhcc
Confidence 3445555555543221 123345555666665554443333222211 55566666655442210 011344
Q ss_pred CCCccEEeeeCCCCCCCC---CccCCCCCCCCEEEccC
Q 002299 816 FESLASLKIIDCPRLDGL---PDELGNLKALEELTVEG 850 (940)
Q Consensus 816 l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~L~~ 850 (940)
+|.|++|.+-+|+....- -..+..+|+|+.||..+
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 555666666555544310 01234455555555544
No 223
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.92 E-value=0.0068 Score=73.18 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=38.0
Q ss_pred CCccchhhhHHHHHHHhhcC------CC-CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 192 KDLVGVECRIKEIELLLRTG------SA-GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~------~~-~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..++|.+..++.+...+... ++ ...++.++|+.|+|||+||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46789888888887776531 11 234688999999999999999998763
No 224
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.91 E-value=0.036 Score=66.76 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=85.4
Q ss_pred CCccchhhhHHHHHHHhhcC----CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHH
Q 002299 192 KDLVGVECRIKEIELLLRTG----SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
.+.+|.++..+++.+++... .....++.++|++|+||||+|+.++..+...|-.+.+ ..+ .+...+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~-~~~------~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL-GGV------RDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEc-CCC------CCHHHhccc
Confidence 45899999999998877631 1234579999999999999999999876554422221 111 111111100
Q ss_pred HHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH------HHHHHcccCC---------------CCCCcE
Q 002299 268 LLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ------IEFLIGRLDW---------------FASGSR 326 (940)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~l~~---------------~~~gs~ 326 (940)
- ....+ .........+.+. ....-+++||.++.... ...+...+.. .-....
T Consensus 395 ~-~~~~g-----~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 R-RTYIG-----SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred h-hccCC-----CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 0 00000 0111222233222 12344788999865322 2333332221 012333
Q ss_pred EEEEeCChhhhhh-CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 327 IIITTRDKQVLSN-CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 327 iiiTtR~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
+|.|+....+... .....++++.+++.+|-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4555544332221 1334678999999999988887765
No 225
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.91 E-value=0.0023 Score=65.39 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
..|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|++.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 44566665444456789999999999999999999877666677888874
No 226
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.89 E-value=0.0036 Score=62.34 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=63.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
+++.|.|+.|.||||++..++..+.......++...- .. +..... ...+. .............+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~~--E~~~~~-~~~~i----~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-PI--EFVHES-KRSLI----NQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-Cc--cccccC-cccee----eecccCCCccCHHHHHHHHhcC
Confidence 4689999999999999999888765544444443210 00 000000 00000 0000011123345666777777
Q ss_pred CceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhh
Q 002299 296 KKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVL 337 (940)
Q Consensus 296 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~ 337 (940)
.+=.+++|++.+.+.+....... ..|..++.|+......
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 77899999998877765544331 3455677787765543
No 227
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.88 E-value=0.017 Score=61.13 Aligned_cols=30 Identities=37% Similarity=0.529 Sum_probs=26.0
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..++.++|||++|.|||.+|++++....-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 456789999999999999999999987544
No 228
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.86 E-value=0.005 Score=60.50 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH-h-hccccceEEEecchhhhccCC--HHHHH-------
Q 002299 197 VECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK-M-SKHFEGSYFAHNVREAQETGG--LAHLR------- 265 (940)
Q Consensus 197 r~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~~~~--~~~l~------- 265 (940)
+..+.....+.+. ...+|.+.|++|.|||.||.+.+-+ + ..+|+..+++...-+....-+ .-.+.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344444555554 3457999999999999999998853 3 467888877654332111100 00111
Q ss_pred H---HHHHHhhCCCCCCCchhhhHHHHH---------hhhcCC---ceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEE
Q 002299 266 Q---QLLSTLLDDRNVKNFPYIILNFQS---------KRFSCK---KVLIVFDDVTHL--KQIEFLIGRLDWFASGSRII 328 (940)
Q Consensus 266 ~---~l~~~~~~~~~~~~~~~~~~~~l~---------~~l~~~---~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii 328 (940)
. ..+..+.+. +.....+. ..++++ ...+|+|++.+. .++..++.. .+.||+||
T Consensus 81 ~p~~d~l~~~~~~-------~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii 150 (205)
T PF02562_consen 81 RPIYDALEELFGK-------EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKII 150 (205)
T ss_dssp HHHHHHHTTTS-T-------TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEE
T ss_pred HHHHHHHHHHhCh-------HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEE
Confidence 1 111111111 11111221 123443 469999999664 456666554 47899999
Q ss_pred EEeCCh
Q 002299 329 ITTRDK 334 (940)
Q Consensus 329 iTtR~~ 334 (940)
++--..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 997654
No 229
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.016 Score=64.27 Aligned_cols=153 Identities=17% Similarity=0.219 Sum_probs=87.5
Q ss_pred CCCccchhhhHHHHHHHhhc----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 191 NKDLVGVECRIKEIELLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
..++=|.+..++++.+++.. +-...+-|.+||++|.|||.||++++....-.| +....
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~isA------- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LSISA------- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Eeecc-------
Confidence 35677899988888776643 113356689999999999999999999764433 22110
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH------H-------HHHHHcccCCCC----C
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK------Q-------IEFLIGRLDWFA----S 323 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~-------~~~l~~~l~~~~----~ 323 (940)
-++.+.+.+ .+.+.+.+.+.+.-..-++++++|+++... + +.+++..+.... .
T Consensus 257 -----peivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 257 -----PEIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred -----hhhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 112222222 222344444555556689999999996421 0 344444433221 1
Q ss_pred CcEEEE---EeCChhhhhhC----CCCcEEEcCCCCHHHHHHHHHHhhc
Q 002299 324 GSRIII---TTRDKQVLSNC----RVDQIYDVKELVDVDALKLFSRCAF 365 (940)
Q Consensus 324 gs~iii---TtR~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 365 (940)
|-.|+| |+|...+-..+ ..+..+.+.--++.+-.+.+...+-
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 222332 45544332222 2345677777777777677666553
No 230
>PRK14974 cell division protein FtsY; Provisional
Probab=96.85 E-value=0.02 Score=61.29 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
+..+++++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999998876554
No 231
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.79 E-value=0.039 Score=60.11 Aligned_cols=45 Identities=13% Similarity=0.300 Sum_probs=36.0
Q ss_pred hhhHHHHHHHhhcCC-CCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 198 ECRIKEIELLLRTGS-AGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 198 ~~~~~~l~~~l~~~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
+.-.+.|.+.+.... ....+|+|.|.=|+|||++.+.+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776543 567899999999999999999999987766
No 232
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.79 E-value=0.006 Score=62.69 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=55.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC------CCCch-hh----
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN------VKNFP-YI---- 284 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~-~~---- 284 (940)
+.++|.|..|+||||||+.+++.++.+|+..+++..+.+. ...+.++.+.+...-..... ..... ..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4589999999999999999999988788777776555432 22344444444432111000 01111 10
Q ss_pred -hHHHHHhhh---cCCceEEEEeCCCChHH
Q 002299 285 -ILNFQSKRF---SCKKVLIVFDDVTHLKQ 310 (940)
Q Consensus 285 -~~~~l~~~l---~~~~~LlVlDdv~~~~~ 310 (940)
..-.+-+++ +++.+|+++||+-...+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 111222333 38899999999865443
No 233
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.78 E-value=0.02 Score=54.75 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=69.6
Q ss_pred chhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc--------------------ccceEEEecchhh
Q 002299 196 GVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH--------------------FEGSYFAHNVREA 255 (940)
Q Consensus 196 Gr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~ 255 (940)
|-+...+.|...+..+ .-...+.++|+.|+||+++|..+++.+-.. ++...|+.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 4455667777777643 234568899999999999999999864221 222333321100
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCC
Q 002299 256 QETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRD 333 (940)
Q Consensus 256 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~ 333 (940)
...-.+..+. .+...+.... ..++.=++|+||++... ....++..+-....++++|++|++
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred cchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 0001111111 1111111100 12244589999998744 355565555555678898888887
Q ss_pred hhh-hhhC-CCCcEEEcCCCC
Q 002299 334 KQV-LSNC-RVDQIYDVKELV 352 (940)
Q Consensus 334 ~~~-~~~~-~~~~~~~l~~L~ 352 (940)
... .... .....+.+.+++
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 643 3222 223456665553
No 234
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0098 Score=69.45 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=69.4
Q ss_pred CCccchhhhHHHHHHHhhcC-------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHH
Q 002299 192 KDLVGVECRIKEIELLLRTG-------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (940)
..++|-+..++.+.+.+... ....+.....|+.|||||.||++++..+-+.=+..+-++ .+++.+.+.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~EkHsVS-- 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYMEKHSVS-- 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHHHHHHH--
Confidence 46899999999988777542 223567788999999999999999997643223334332 34433333322
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCce-EEEEeCCCC--hHHHHHHHcccC
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKV-LIVFDDVTH--LKQIEFLIGRLD 319 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~--~~~~~~l~~~l~ 319 (940)
++...-.+-- .......+.+ ..+.++| +|.||+++. .+.++-|+..+.
T Consensus 568 --rLIGaPPGYV-GyeeGG~LTE----aVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 568 --RLIGAPPGYV-GYEEGGQLTE----AVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred --HHhCCCCCCc-eeccccchhH----hhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 2222111111 1122233444 4455777 888999965 444555655554
No 235
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00058 Score=67.72 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=41.9
Q ss_pred CCCCccEEeeeCC--CCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC
Q 002299 815 MFESLASLKIIDC--PRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 815 ~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
.||+|++|.++.| .....++--...+|+|++|++++|++..+. ++ ..+..+.+|..|++.+|+.++.--
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls-tl--------~pl~~l~nL~~Ldl~n~~~~~l~d 133 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS-TL--------RPLKELENLKSLDLFNCSVTNLDD 133 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc-cc--------chhhhhcchhhhhcccCCcccccc
Confidence 3556666666666 444334433444566666666666665311 11 113345566666666666554111
Q ss_pred ---CCcCCchhhhhhhc
Q 002299 893 ---DELGSLEALKRLYA 906 (940)
Q Consensus 893 ---~~~~~l~~L~~L~l 906 (940)
..|.-+++|++|+-
T Consensus 134 yre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 134 YREKVFLLLPSLKYLDG 150 (260)
T ss_pred HHHHHHHHhhhhccccc
Confidence 13444555555443
No 236
>PRK04296 thymidine kinase; Provisional
Probab=96.75 E-value=0.0043 Score=61.23 Aligned_cols=111 Identities=17% Similarity=0.059 Sum_probs=61.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC--CCCchhhhHHHHHhhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN--VKNFPYIILNFQSKRF 293 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~l~~~l 293 (940)
.++.|+|..|.||||+|..++.+...+...++++.. ..........+ ...+..... ......+....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~~~i----~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGEGKV----VSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccCCcE----ecCCCCcccceEeCChHHHHHHHHh-h
Confidence 367899999999999999999987665444444421 00111111111 111111000 01223334444444 2
Q ss_pred cCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChh
Q 002299 294 SCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDKQ 335 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~ 335 (940)
.++.-+||+|.+.-. +++.++...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 334459999999653 33444443322 56889999999853
No 237
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.74 E-value=0.012 Score=61.50 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=29.0
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.+.++++++|++|+||||++..++..+...-..+.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34688999999999999999999987765533444443
No 238
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.73 E-value=0.019 Score=56.75 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=94.4
Q ss_pred CCccchhhhHHH---HHHHhhc----CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHH
Q 002299 192 KDLVGVECRIKE---IELLLRT----GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 192 ~~~vGr~~~~~~---l~~~l~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (940)
+++||.+..... |.+.|.. +...++-|..+|++|.|||.+|+++++..+-.| +.+-
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~vk------------ 183 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LLVK------------ 183 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EEec------------
Confidence 567887765543 3455543 234577899999999999999999998654332 1110
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--------------HHHHHHcccCCC--CCCcEEE
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--------------QIEFLIGRLDWF--ASGSRII 328 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~~--~~gs~ii 328 (940)
..+++....++. ...+.+...+.-+.-++.+.+|.++... .+..++..+... +.|...|
T Consensus 184 at~liGehVGdg-----ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 184 ATELIGEHVGDG-----ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred hHHHHHHHhhhH-----HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 112333222211 1112222222234478999999885422 244555544432 3454555
Q ss_pred EEeCChhhhhh---CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC
Q 002299 329 ITTRDKQVLSN---CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 329 iTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 388 (940)
-.|-....+.. ....+.++...-+++|-.+++...+-.-.-+.+. -.+.++++.+|.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 55555544332 1233567777778888888888877322222111 134555555554
No 239
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.72 E-value=0.016 Score=70.43 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=38.8
Q ss_pred CccchhhhHHHHHHHhhc----CCCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 193 DLVGVECRIKEIELLLRT----GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
..+|.+...+++.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 478888888888776542 122335799999999999999999999875544
No 240
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.72 E-value=0.0082 Score=61.06 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
+..|..+|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|++.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 345666665444456789999999999999999999877555556677753
No 241
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.71 E-value=0.014 Score=71.41 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=41.6
Q ss_pred CCccchhhhHHHHHHHhhcC------CC-CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 192 KDLVGVECRIKEIELLLRTG------SA-GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~------~~-~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
..++|.+..++.+...+... ++ ...++.++|+.|+|||++|+.+++.+...-...+.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id 633 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID 633 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE
Confidence 46889999988887776531 11 1247889999999999999999986543333334443
No 242
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.70 E-value=0.0038 Score=63.07 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=35.2
Q ss_pred HhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 207 LLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 207 ~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
+|..+-..-.++.|+|++|+|||++|.+++......-..++|++.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 344343456789999999999999999999877666667888875
No 243
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.15 Score=54.97 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=58.6
Q ss_pred CceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCC-hhhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 002299 296 KKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRD-KQVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPT 371 (940)
Q Consensus 296 ~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 371 (940)
++=++|+|+++... ....++..+-.-.+++.+|++|.+ ..+.... .....+.+.+++.++..+.+.... . .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-A 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence 44488899997654 356666666555677766655555 4444432 234689999999999999987652 1 1
Q ss_pred chhhHHHHHHHHHhcCChhhHHHH
Q 002299 372 ASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 372 ~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
+ ...++..++|.|.....+
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHHH
Confidence 1 123567789999755443
No 244
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.015 Score=63.35 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=80.0
Q ss_pred CccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc---------------------cceEEEec
Q 002299 193 DLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF---------------------EGSYFAHN 251 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~ 251 (940)
.++|-+....++..+..........+.++|++|+||||+|.++++.+.... +.+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 456777777777777764433444589999999999999999999764322 12222211
Q ss_pred chhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEE
Q 002299 252 VREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIII 329 (940)
Q Consensus 252 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iii 329 (940)
... .......+..+++........ ..++.-++|+|+++.... ...+...+-.....+++|+
T Consensus 82 s~~-~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 82 SDL-RKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred ccc-CCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 100 000001122222222111110 024566999999987554 4455555444567788888
Q ss_pred EeCCh-hhhhhC-CCCcEEEcCCCCHHHH
Q 002299 330 TTRDK-QVLSNC-RVDQIYDVKELVDVDA 356 (940)
Q Consensus 330 TtR~~-~~~~~~-~~~~~~~l~~L~~~ea 356 (940)
+|... .+.... .....+.+.+.+..+.
T Consensus 145 ~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 145 ITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EcCChhhccchhhhcceeeecCCchHHHH
Confidence 87743 333322 2234666666444433
No 245
>PRK08118 topology modulation protein; Reviewed
Probab=96.68 E-value=0.0014 Score=63.13 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=25.7
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhc---cccceEE
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSK---HFEGSYF 248 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~---~f~~~~~ 248 (940)
.|.|+|++|+||||||+.+++++.- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 4889999999999999999997643 3555554
No 246
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.67 E-value=0.0015 Score=59.25 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.67 E-value=0.013 Score=56.41 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=27.7
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
++.|+|.+|+||||++..++.....+-..++|+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 36799999999999999999877655455666653
No 248
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.67 E-value=0.011 Score=71.95 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=38.9
Q ss_pred CCccchhhhHHHHHHHhhcC-------CCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 192 KDLVGVECRIKEIELLLRTG-------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
..++|.+..++.+.+.+... .....++.++|+.|+|||.+|+++++.+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 46889999998887776431 123457899999999999999999987643
No 249
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.67 E-value=0.002 Score=68.61 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=41.2
Q ss_pred CccchhhhHHHHHHHhhcC----CCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 193 DLVGVECRIKEIELLLRTG----SAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.++|.++.++++.+++... ....++++|+|++|+||||||+.+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999888653 234678999999999999999999986643
No 250
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.65 E-value=0.013 Score=60.10 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc------cceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF------EGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~ 251 (940)
..|.++|..+-..-.++.|+|.+|+|||++|..++....... ..++|+..
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 345555654444567899999999999999999987654444 56678764
No 251
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.65 E-value=0.013 Score=60.40 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=37.0
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
+..|.++|..+-..-.++.|+|.+|+|||++|.+++.....+-..++|+..
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 345556665454556789999999999999999997754444456777754
No 252
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.64 E-value=0.064 Score=60.86 Aligned_cols=166 Identities=17% Similarity=0.180 Sum_probs=99.2
Q ss_pred CCCCccchhhhHHHHHHHhhcC--C-CCeeEEEEEecCCchhhHHHHHHHHHhh--------ccccceEEEecchhhhcc
Q 002299 190 DNKDLVGVECRIKEIELLLRTG--S-AGVCKLGIWGIGGIGKTTIAGAIFTKMS--------KHFEGSYFAHNVREAQET 258 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~--~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~--------~~f~~~~~~~~~~~~~~~ 258 (940)
.+..+-+|+.+..+|...+... . .....+-|.|.+|.|||+.+..|.+.++ ..|+++ .+... .-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yv-eINgm----~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYV-EINGL----RL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEE-EEcce----ee
Confidence 5567889999999998887642 2 2344789999999999999999998543 124432 33332 22
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc-----CCceEEEEeCCCChHH--HHHHHcccCCC-CCCcEEEEE
Q 002299 259 GGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS-----CKKVLIVFDDVTHLKQ--IEFLIGRLDWF-ASGSRIIIT 330 (940)
Q Consensus 259 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~l~~~l~~~-~~gs~iiiT 330 (940)
....++...++..+.+... ......+.+..++. .+..++++|+++..-. -+-+-..+.|. .++++++|-
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred cCHHHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 3467788888888766553 33344555555543 3568899998754322 11222223332 578887665
Q ss_pred eCCh--h---------hhhhCCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 331 TRDK--Q---------VLSNCRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 331 tR~~--~---------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
+=.. . +...++ ...+...+.+.++-.+....+.
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred EecccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhh
Confidence 4311 0 111111 1345666777777666665554
No 253
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0095 Score=69.56 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=86.1
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc-cccc-----eEEEecchhhhccCCHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK-HFEG-----SYFAHNVREAQETGGLAH 263 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~-----~~~~~~~~~~~~~~~~~~ 263 (940)
.-+.++||+.|+.++.+.|......-+ .++|.+|||||++|.-++.++.. ..+. .++-.++ ..
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~---------g~ 236 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL---------GS 236 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH---------HH
Confidence 345789999999999999976543332 47899999999999999987643 2221 2221111 11
Q ss_pred HHHHHHHHhhCCCCCCCchhhhH-HHHHhhhcCCceEEEEeCCCCh-----------HHHHHHHcccCCCCCCcEEEEEe
Q 002299 264 LRQQLLSTLLDDRNVKNFPYIIL-NFQSKRFSCKKVLIVFDDVTHL-----------KQIEFLIGRLDWFASGSRIIITT 331 (940)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iiiTt 331 (940)
+ +.+.. -....++.. ..+.+.-+.+++.|.+|.++.. +.-.-+.+.+. .+.--.|-.||
T Consensus 237 L-------vAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT 307 (786)
T COG0542 237 L-------VAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATT 307 (786)
T ss_pred H-------hcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEecc
Confidence 1 11111 111222222 2233332345899999997431 12222333332 22223455566
Q ss_pred CChhh------hhhCCCCcEEEcCCCCHHHHHHHHHHh
Q 002299 332 RDKQV------LSNCRVDQIYDVKELVDVDALKLFSRC 363 (940)
Q Consensus 332 R~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 363 (940)
-++.. +.....-+.+.|+..+.+++.+.+...
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 54321 001123467899999999999988643
No 254
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.61 E-value=0.0076 Score=64.50 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=57.6
Q ss_pred HHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcccc-ceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCch
Q 002299 204 IELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE-GSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFP 282 (940)
Q Consensus 204 l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 282 (940)
+.+.+..-..+ ..+.|+|.+|+|||||++.+++.+....+ ..+++..+.+ ....+.++.+.+...+.....+....
T Consensus 123 vID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 123 VVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred hhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 55555432222 34689999999999999999997765543 3223322322 23456677777766544322111111
Q ss_pred h------hhHHHHHhh-hcCCceEEEEeCCCChH
Q 002299 283 Y------IILNFQSKR-FSCKKVLIVFDDVTHLK 309 (940)
Q Consensus 283 ~------~~~~~l~~~-l~~~~~LlVlDdv~~~~ 309 (940)
. ...+..... -++++++||+|++....
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 1 111111111 25799999999985543
No 255
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.59 E-value=0.015 Score=59.80 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
+..|.++|..+-..-.++.|.|.+|+|||++|.+++.....+-..++|+..
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 345566665554556789999999999999999988765455567777753
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.58 E-value=0.0039 Score=61.54 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=26.7
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
++++.++|+.|+||||.+.+++.+.+.+-..+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999888887665533344443
No 257
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.005 Score=60.17 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=31.5
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
...+|.+.|+.|+||||+|+.++.++...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3458999999999999999999999887777777764
No 258
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.57 E-value=0.013 Score=72.09 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=42.6
Q ss_pred CCccchhhhHHHHHHHhhcC------CC-CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 192 KDLVGVECRIKEIELLLRTG------SA-GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~------~~-~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
..++|.+..++.+...+... +. ...++.++|+.|+|||++|+.++..+...-...+.++
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d 630 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID 630 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 46899999999988877542 11 1356889999999999999999987644333333333
No 259
>PRK07261 topology modulation protein; Provisional
Probab=96.52 E-value=0.008 Score=58.20 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.|.|+|++|+||||||++++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 260
>PRK06696 uridine kinase; Validated
Probab=96.52 E-value=0.0049 Score=62.79 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=36.7
Q ss_pred chhhhHHHHHHHhhc-CCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 196 GVECRIKEIELLLRT-GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 196 Gr~~~~~~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
.|.+.+++|.+.+.. ...+..+|+|.|.+|+||||+|++++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 356667777766643 34567899999999999999999999977543
No 261
>PHA00729 NTP-binding motif containing protein
Probab=96.50 E-value=0.011 Score=58.72 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+...|.|+|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998764
No 262
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.50 E-value=0.063 Score=59.77 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=25.4
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
.+.+|.++|.+|+||||+|..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999877654
No 263
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.49 E-value=0.059 Score=52.98 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=41.7
Q ss_pred CCCCCCccchhhhHHHHHH----HhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccce
Q 002299 188 QSDNKDLVGVECRIKEIEL----LLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGS 246 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~----~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 246 (940)
+.+-..++|.+...+.+.+ ++. + ....-|.+||--|.||+.|++++.+.+.++.-.-
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL 116 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRL 116 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeE
Confidence 3445678999888877753 222 2 1233488999999999999999999887776553
No 264
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.055 Score=61.26 Aligned_cols=157 Identities=16% Similarity=0.138 Sum_probs=84.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhc-cccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSK-HFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF 293 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 293 (940)
.+-|.|.|..|+|||+||+++++.+.. .+-++.++++.. .....+..+++-+ ...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~--l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST--LDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh--ccchhHHHHHHHH-----------------HHHHHHHH
Confidence 445889999999999999999997753 334445554421 1122233333322 23344556
Q ss_pred cCCceEEEEeCCCChHH---------------HHHH----HcccCCCCCCcE--EEEEeCChhhhhh-----CCCCcEEE
Q 002299 294 SCKKVLIVFDDVTHLKQ---------------IEFL----IGRLDWFASGSR--IIITTRDKQVLSN-----CRVDQIYD 347 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~~~---------------~~~l----~~~l~~~~~gs~--iiiTtR~~~~~~~-----~~~~~~~~ 347 (940)
...+-++||||++.... +..+ ...+. ..+.+ +|.|.....-... .-......
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 66888999999853211 1111 11111 23444 3444443322221 12335678
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC-hhhHHH
Q 002299 348 VKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV-PLALKV 394 (940)
Q Consensus 348 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~ 394 (940)
+..+..++-.++++...-+ ...... .+...-+..+|+|. |.-+++
T Consensus 570 L~ap~~~~R~~IL~~~~s~-~~~~~~-~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSK-NLSDIT-MDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred cCCcchhHHHHHHHHHHHh-hhhhhh-hHHHHHHHHhcCCccchhHHH
Confidence 8999988888877655422 111111 12222366777764 444444
No 265
>PRK07667 uridine kinase; Provisional
Probab=96.47 E-value=0.006 Score=60.45 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
.+.+.+.+........+|+|.|.+|+||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345556665555566899999999999999999999977643
No 266
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.46 E-value=0.01 Score=62.92 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=37.8
Q ss_pred HHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 202 KEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
..|..+|. .+-..-+++-|+|++|+||||||..++......-..++|++.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 44555665 333456788999999999999999998876666667788864
No 267
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.46 E-value=0.012 Score=60.74 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=34.9
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc------ccceEEEec
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH------FEGSYFAHN 251 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~~ 251 (940)
.|.++|..+-..-.++.|+|.+|+|||++|..++...... -..++|++.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 4455555444456789999999999999999998643222 257788864
No 268
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0033 Score=57.51 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=26.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcc-ccce
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGS 246 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~ 246 (940)
--|+|.|++|+||||+++.+++.+++. |...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 348999999999999999999988766 6543
No 269
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.45 E-value=0.0031 Score=58.74 Aligned_cols=44 Identities=23% Similarity=0.247 Sum_probs=30.6
Q ss_pred cchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH
Q 002299 195 VGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 195 vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
||....++++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56666777776665543233345889999999999999988874
No 270
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.44 E-value=0.011 Score=62.62 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 202 KEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
..|..+|. .+-..-+++-|+|++|+||||||..++......-..++|++.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 45555664 344556789999999999999999988876666566778864
No 271
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.02 Score=60.84 Aligned_cols=96 Identities=21% Similarity=0.218 Sum_probs=57.5
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhC-CCC--
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLD-DRN-- 277 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-- 277 (940)
+.++.+.|..+--.-.+|.|-|.+|||||||..+++.++..+. .+.||.. +....++.-+. ..+.- ...
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~QiklRA-~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQIKLRA-DRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHHHHHH-HHhCCCccceE
Confidence 4455566644322345789999999999999999999988776 7777753 23333332211 11211 111
Q ss_pred --CCCchhhhHHHHHhhhcCCceEEEEeCCCC
Q 002299 278 --VKNFPYIILNFQSKRFSCKKVLIVFDDVTH 307 (940)
Q Consensus 278 --~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 307 (940)
...+.+++.+.+.+ .++-++|+|-+..
T Consensus 151 l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 151 LLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred EehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 22333344444433 4788999999843
No 272
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.41 E-value=0.025 Score=66.95 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=71.4
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCC
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCK 296 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 296 (940)
-|.|+|++|.|||++|+.++......| +.+.. .. +... ..+ .........+.......
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f---~~is~-~~---------~~~~----~~g-----~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISG-SD---------FVEM----FVG-----VGASRVRDMFEQAKKAA 244 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCE---EEEeh-HH---------hHHh----hhc-----ccHHHHHHHHHHHHhcC
Confidence 488999999999999999998764433 12211 10 0000 000 00111222222333346
Q ss_pred ceEEEEeCCCChH----------------HHHHHHcccCCCC--CCcEEEEEeCChhhhhh-----CCCCcEEEcCCCCH
Q 002299 297 KVLIVFDDVTHLK----------------QIEFLIGRLDWFA--SGSRIIITTRDKQVLSN-----CRVDQIYDVKELVD 353 (940)
Q Consensus 297 ~~LlVlDdv~~~~----------------~~~~l~~~l~~~~--~gs~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~ 353 (940)
+.+|++|+++... .+..++..+..+. .+.-||.||...+.... -..+..+.++..+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 7899999986531 1333433333222 23445556665543221 13456788999998
Q ss_pred HHHHHHHHHhhcC
Q 002299 354 VDALKLFSRCAFG 366 (940)
Q Consensus 354 ~ea~~Lf~~~~~~ 366 (940)
++..+++..+...
T Consensus 325 ~~R~~Il~~~~~~ 337 (644)
T PRK10733 325 RGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888877643
No 273
>PRK04132 replication factor C small subunit; Provisional
Probab=96.40 E-value=0.041 Score=65.84 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=89.8
Q ss_pred EEe--cCCchhhHHHHHHHHHh-hccccc-eEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 220 IWG--IGGIGKTTIAGAIFTKM-SKHFEG-SYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 220 I~G--~gGiGKTtLa~~~~~~~-~~~f~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
+.| |.++||||+|.++++++ .+.++. .+-+.+ +...++..+ +++.......... -..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA----Sd~rgid~I-R~iIk~~a~~~~~--------------~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNA----SDERGINVI-REKVKEFARTKPI--------------GGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC----CCcccHHHH-HHHHHHHHhcCCc--------------CCC
Confidence 347 88999999999999976 333322 333332 222233322 3333322211100 011
Q ss_pred CceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCCh-hhhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 002299 296 KKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDK-QVLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPT 371 (940)
Q Consensus 296 ~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 371 (940)
+.-++|+|+++... +...++..+......+++|+++.+. .+.... .....+.+.+++.++..+.+.+.+-.....
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~- 708 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE- 708 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-
Confidence 34699999998765 4555665555445667777666554 333222 234689999999999988887765322211
Q ss_pred chhhHHHHHHHHHhcCChhhHH
Q 002299 372 ASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 372 ~~~~~~~~~i~~~~~g~PLal~ 393 (940)
-.++....|++.++|-+..+.
T Consensus 709 -i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 709 -LTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred -CCHHHHHHHHHHcCCCHHHHH
Confidence 124567889999999885443
No 274
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.38 E-value=0.025 Score=65.39 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=36.9
Q ss_pred CCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 191 NKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999988776433 23346799999999999999998743
No 275
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.38 E-value=0.023 Score=69.54 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=37.8
Q ss_pred CCccchhhhHHHHHHHhhcC------CC-CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 192 KDLVGVECRIKEIELLLRTG------SA-GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~------~~-~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..++|-+..++.+...+... ++ ....+.++|+.|+|||+||+.+++.+-
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 56889998888887776421 11 234577999999999999999998764
No 276
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.057 Score=57.99 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=39.8
Q ss_pred eEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCChh-hhhhC-CCCcEEEcCCCCHHHHHHHHHHh
Q 002299 298 VLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDKQ-VLSNC-RVDQIYDVKELVDVDALKLFSRC 363 (940)
Q Consensus 298 ~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 363 (940)
=++|+|+++..+ ....+...+.....+..+|++|.+.. +.... .....+.+.+++.+++.+.+...
T Consensus 115 kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 115 RVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred eEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 355668886543 23333333332334566777777654 33222 22367899999999999888654
No 277
>PRK09354 recA recombinase A; Provisional
Probab=96.34 E-value=0.012 Score=62.71 Aligned_cols=99 Identities=20% Similarity=0.175 Sum_probs=58.2
Q ss_pred HHHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH---HHHhhCCC
Q 002299 201 IKEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL---LSTLLDDR 276 (940)
Q Consensus 201 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~ 276 (940)
...|..+|. .+-..-+++-|+|++|+||||||..++......-..++|++.-..... ...+++ +..+...
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~- 118 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVS- 118 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEe-
Confidence 345566665 444556789999999999999999998876666677888865322211 111111 0111111
Q ss_pred CCCCchhhhHHHHHhhhcC-CceEEEEeCCC
Q 002299 277 NVKNFPYIILNFQSKRFSC-KKVLIVFDDVT 306 (940)
Q Consensus 277 ~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 306 (940)
.+...++....+....+. ..-++|+|.|.
T Consensus 119 -qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 119 -QPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred -cCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 123344455555544433 45589999974
No 278
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.32 E-value=0.023 Score=62.07 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=37.3
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+..
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 345556665443445689999999999999999999877665556777753
No 279
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.29 E-value=0.023 Score=54.55 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=31.7
Q ss_pred ccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHH
Q 002299 194 LVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 194 ~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
+||....++++.+.+..-.....-|.|+|..|+||+.+|+.+.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47878888888776654332224477999999999999999988
No 280
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.25 E-value=0.00048 Score=79.98 Aligned_cols=61 Identities=30% Similarity=0.311 Sum_probs=33.0
Q ss_pred ccCCCceeeCCCCCCCCcC---CCcccCCCccEEeccCC-CCCcccc----ccccCCCcccEEEecCCC
Q 002299 620 NLVNLKEIDLSDSKQLTKL---PDLSLARNLESLDLWGC-SSLMETH----SSIQYLNKLAFLYLVSCE 680 (940)
Q Consensus 620 ~l~~L~~L~L~~~~~~~~~---~~l~~l~~L~~L~L~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~ 680 (940)
.+++|+.|.+.++...... +....+++|+.|++++| ......+ .....+++|+.|+++++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 3677777777777554432 23556777777777763 2221111 122344556666666554
No 281
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.23 E-value=0.23 Score=54.86 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=27.5
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
...+|.++|.+|+||||+|..++..++.+-..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 467999999999999999999988665542233443
No 282
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.18 Score=58.87 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=99.4
Q ss_pred CCCccchhhhHH---HHHHHhhcC-------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 191 NKDLVGVECRIK---EIELLLRTG-------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 191 ~~~~vGr~~~~~---~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
-.++.|.+...+ ++.++|... ..-++=|.|+|++|.|||-||+++|-.-. +=|+.+....
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGSE----- 379 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGSE----- 379 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechHH-----
Confidence 356788776544 455555432 22345688999999999999999997532 2223222110
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCC-----------------hHHHHHHHcccCCCCC
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTH-----------------LKQIEFLIGRLDWFAS 323 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-----------------~~~~~~l~~~l~~~~~ 323 (940)
+ .+...+.. .....+.....-...++.+.+|+++. ...+.+++..++.+..
T Consensus 380 ---F----vE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 380 ---F----VEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---H----HHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 0 00000000 00111122222233566777776633 1226777776665554
Q ss_pred CcEE--EEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhh
Q 002299 324 GSRI--IITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLA 391 (940)
Q Consensus 324 gs~i--iiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (940)
...| +-+|...+++.. -..+..+.++.-+.....+.|.-|+-..... .+..++++ |+....|.+=|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 4433 334444443321 2345678888889999999999888554433 33445555 88888888755
No 283
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.19 E-value=0.25 Score=49.74 Aligned_cols=208 Identities=13% Similarity=0.179 Sum_probs=113.0
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc------cccceEEEecchh---------h-
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK------HFEGSYFAHNVRE---------A- 255 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~---------~- 255 (940)
+.+.++++.-..+..+.. .++.+-..++|+.|.||-|.+..+.+.+-+ +-+...|...... .
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 346677766666666554 245677889999999999998888775422 2233344322111 0
Q ss_pred ------hccC-CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCce-EEEEeCCCCh--HHHHHHHcccCCCCCCc
Q 002299 256 ------QETG-GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKV-LIVFDDVTHL--KQIEFLIGRLDWFASGS 325 (940)
Q Consensus 256 ------~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs 325 (940)
++.. .-+-+.++++.++........ -..+.| ++|+-.++.. +.-..+..........+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 1111 112234445544443321100 011334 5556555432 22223333333345677
Q ss_pred EEEEEeCChh-h-hhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhc--C
Q 002299 326 RIIITTRDKQ-V-LSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLS--G 401 (940)
Q Consensus 326 ~iiiTtR~~~-~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~--~ 401 (940)
|+|+..-+.. + .+.-...-.++++..+++|....+++.+-+....-+ .+++.+|+++++|.---.-.+-...+ +
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 8877543221 1 111122346899999999999999887744443333 67899999999997533222222222 1
Q ss_pred ---------CCHHHHHHHHHHHh
Q 002299 402 ---------RRKEEWKSAMRKLE 415 (940)
Q Consensus 402 ---------~~~~~w~~~l~~l~ 415 (940)
-+.-+|+-.+.+..
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHH
Confidence 13467988877643
No 284
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.17 E-value=0.03 Score=53.31 Aligned_cols=119 Identities=16% Similarity=0.092 Sum_probs=60.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhh--CCC------CCC---Cchh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLL--DDR------NVK---NFPY 283 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~------~~~---~~~~ 283 (940)
...|-|++..|.||||.|..++.+...+=-.++.+.-..... ..+-....+.+.-.+. +.. +.. ....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~-~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW-PNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc-ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 357888888999999999999887654433332222111110 1122222222200000 000 000 1122
Q ss_pred hhHHHHHhhhcCCce-EEEEeCCCChHH-----HHHHHcccCCCCCCcEEEEEeCCh
Q 002299 284 IILNFQSKRFSCKKV-LIVFDDVTHLKQ-----IEFLIGRLDWFASGSRIIITTRDK 334 (940)
Q Consensus 284 ~~~~~l~~~l~~~~~-LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~iiiTtR~~ 334 (940)
...+..++.+...++ |+|||.+-..-. .+.+...+....++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 233444444544444 999999843221 233333333346778999999976
No 285
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.17 E-value=0.041 Score=51.89 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.0
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
+|.|+|.+|+||||+|+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987653
No 286
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.16 E-value=0.03 Score=66.90 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=38.4
Q ss_pred CCccchhhhHHHHHHHhhcC------C-CCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 192 KDLVGVECRIKEIELLLRTG------S-AGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~------~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..++|-+..++.+...+... . .....+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999988888777531 1 1245688999999999999999998773
No 287
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.081 Score=58.93 Aligned_cols=129 Identities=18% Similarity=0.263 Sum_probs=78.4
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
..-|.+||++|.|||-||+++++.-+-.| +.+-+. +++....++ +.......+++.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isVKGP------------ELlNkYVGE-----SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISVKGP------------ELLNKYVGE-----SERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----EeecCH------------HHHHHHhhh-----HHHHHHHHHHHhhc
Confidence 34488999999999999999999866555 322111 122222111 11122233333334
Q ss_pred CCceEEEEeCCCCh-------------HHHHHHHcccCCC--CCCcEEEEEeCChhhhh-----hCCCCcEEEcCCCCHH
Q 002299 295 CKKVLIVFDDVTHL-------------KQIEFLIGRLDWF--ASGSRIIITTRDKQVLS-----NCRVDQIYDVKELVDV 354 (940)
Q Consensus 295 ~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~gs~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ 354 (940)
..+++|.||.++.. ..+.+++..+... ..|.-||-.|-.+++.. .-..+..+-|+.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 57999999998542 1155666665533 24555665554443322 2234578889999999
Q ss_pred HHHHHHHHhhc
Q 002299 355 DALKLFSRCAF 365 (940)
Q Consensus 355 ea~~Lf~~~~~ 365 (940)
|-.+.++...-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999988774
No 288
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.031 Score=53.44 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcccc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFE 244 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 244 (940)
+.|.+.|.+|+||||+|+++++.+++.-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 45789999999999999999987765543
No 289
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.11 E-value=0.087 Score=61.52 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=39.8
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.....++|....++++.+.+..-.....-|.|+|..|+|||++|+.+.+.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999998887775433333447899999999999999998753
No 290
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.11 E-value=0.027 Score=54.41 Aligned_cols=118 Identities=16% Similarity=0.073 Sum_probs=61.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHh----hCCC------CC---CCc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTL----LDDR------NV---KNF 281 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~------~~---~~~ 281 (940)
...|.|+|..|-||||.|...+-+...+=-.+..+.-..... ..+-....+.+. .+ .+.. .. ...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence 457899999999999999999887654433333332222111 112222222210 00 0000 00 011
Q ss_pred hhhhHHHHHhhhcCCc-eEEEEeCCCChHH-----HHHHHcccCCCCCCcEEEEEeCCh
Q 002299 282 PYIILNFQSKRFSCKK-VLIVFDDVTHLKQ-----IEFLIGRLDWFASGSRIIITTRDK 334 (940)
Q Consensus 282 ~~~~~~~l~~~l~~~~-~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~iiiTtR~~ 334 (940)
.....+..++.+...+ =|+|||.+-..-. .+++...+....++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1123334444554444 4999999843222 333433334446778999999976
No 291
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00028 Score=69.89 Aligned_cols=100 Identities=21% Similarity=0.171 Sum_probs=66.7
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
.+.+.|++.||.+.+. .....|+.|+.|.|+-|.+.+.- .+..+++|++|+|..|.|..+.+- ..+.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL---------~YLk 85 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDEL---------EYLK 85 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHH---------HHHh
Confidence 4566667777654332 12346788888888888877633 367788888888888887765431 2356
Q ss_pred CCCCCCEEeccCCCCCcccCC-----CcCCchhhhhhh
Q 002299 873 KSKCLQDSYLDDCPNLHRLPD-----ELGSLEALKRLY 905 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p~-----~~~~l~~L~~L~ 905 (940)
++|+|+.|.|..|+--+.-+. .+..||+|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 788888888888876554433 455667777665
No 292
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.061 Score=58.79 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=34.4
Q ss_pred CCccchhh---hHHHHHHHhhcCC-------CCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 192 KDLVGVEC---RIKEIELLLRTGS-------AGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 192 ~~~vGr~~---~~~~l~~~l~~~~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+++-|.++ |++++.++|.... .=++-|.++|++|.|||-||++++-+.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 34566664 5666677776432 124558899999999999999999753
No 293
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.07 E-value=0.02 Score=54.89 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=23.5
Q ss_pred EEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
+.|.|.+|+|||++|.+++.. ....++|+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 678999999999999999875 223556664
No 294
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.05 E-value=0.0075 Score=67.60 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=40.8
Q ss_pred CccchhhhHHHHHHHhh----cCCCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 193 DLVGVECRIKEIELLLR----TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
+++|.++.++++...|. ......+++.++|++|+||||||+.+++-+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 68999999999998883 22345679999999999999999999986543
No 295
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.04 E-value=0.018 Score=62.63 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=63.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
...+.|.|+.|.||||+++.+...+.......++..- . ......... .................+.++..++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE-d------p~E~~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE-D------PIEYVHRNK-RSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc-C------ChhhhccCc-cceEEccccCCCCcCHHHHHHHhhc
Confidence 3579999999999999999998877655555554321 0 000000000 0000000001112245566777788
Q ss_pred CCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChh
Q 002299 295 CKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQ 335 (940)
Q Consensus 295 ~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 335 (940)
..+=.|++|.+.+.+.+...... ...|..|+.|.....
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNS 231 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCC
Confidence 88899999999887776553332 134555666665543
No 296
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.15 Score=55.81 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=22.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 297
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.01 E-value=0.028 Score=58.48 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=29.7
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
.-.++.|.|.+|+|||++|.+++.....+-..++|+..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45678999999999999999988765444456777764
No 298
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.00 E-value=0.01 Score=55.45 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.+|-|.|.+|+||||||+++.+++.+.-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57899999999999999999999988776677765
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.99 E-value=0.16 Score=56.53 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.8
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+.++.++|.+|+||||+|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999988764
No 300
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.98 E-value=0.012 Score=56.63 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.8
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
++.|.|.+|+||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998764
No 301
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.046 Score=63.22 Aligned_cols=131 Identities=19% Similarity=0.168 Sum_probs=76.3
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF 293 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 293 (940)
..+.+.++|++|.|||.||++++......|-.+..- .+..+.+ ........+.+....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~l~sk~v---------Gesek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------ELLSKWV---------GESEKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------HHhcccc---------chHHHHHHHHHHHHH
Confidence 455789999999999999999999665555322211 1111110 011112223333334
Q ss_pred cCCceEEEEeCCCCh-------------HHHHHHHcccCCCCCCc--EEEEEeCChhhhhh-----CCCCcEEEcCCCCH
Q 002299 294 SCKKVLIVFDDVTHL-------------KQIEFLIGRLDWFASGS--RIIITTRDKQVLSN-----CRVDQIYDVKELVD 353 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~gs--~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~ 353 (940)
+..++.|.+|.++.. .....++..+....... .||-||-....... ...+..+.++.-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 568899999998442 12444444443233333 34444443332221 13456889999999
Q ss_pred HHHHHHHHHhhcC
Q 002299 354 VDALKLFSRCAFG 366 (940)
Q Consensus 354 ~ea~~Lf~~~~~~ 366 (940)
++..+.|..+.-.
T Consensus 413 ~~r~~i~~~~~~~ 425 (494)
T COG0464 413 EERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988743
No 302
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.98 E-value=0.096 Score=56.61 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=36.5
Q ss_pred CCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHH
Q 002299 191 NKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
...++|+...+.++.+.+..-.....-|.|+|..|+||+++|+.+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 34689999888888777654333333488999999999999998875
No 303
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.94 E-value=0.05 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.9
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999865
No 304
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.92 E-value=0.34 Score=55.49 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=35.7
Q ss_pred HHHhhhcCCceEEEEeCCCC------hHHHHHHHcccCCCCCCcEEEEEeCChhhhhhCCCCcEEEcCC
Q 002299 288 FQSKRFSCKKVLIVFDDVTH------LKQIEFLIGRLDWFASGSRIIITTRDKQVLSNCRVDQIYDVKE 350 (940)
Q Consensus 288 ~l~~~l~~~~~LlVlDdv~~------~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~~~~~l~~ 350 (940)
.+...+..++-+||||.=.+ .+.++..+.. -.+.||+.|.++....... ..++.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-----f~Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-----FEGTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-----CCCeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 33444566888999997543 3334443333 2356889999998877654 45666654
No 305
>PRK04328 hypothetical protein; Provisional
Probab=95.89 E-value=0.063 Score=55.58 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
..|.++|..+-..-.++.|.|.+|.|||+||.+++.....+-..++|+..
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 35555665444445689999999999999999988765445566777753
No 306
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.89 E-value=0.052 Score=56.73 Aligned_cols=52 Identities=19% Similarity=0.098 Sum_probs=32.6
Q ss_pred cchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHH-H--hhccccceEE
Q 002299 195 VGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFT-K--MSKHFEGSYF 248 (940)
Q Consensus 195 vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~-~--~~~~f~~~~~ 248 (940)
-+|..+..--.++|.. +++..|.+.|.+|.|||.||.+..- + .++.|..++-
T Consensus 227 ~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiV 281 (436)
T COG1875 227 RPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIV 281 (436)
T ss_pred CcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEE
Confidence 3444443333344432 5688999999999999999887653 2 2445555443
No 307
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.49 Score=46.67 Aligned_cols=146 Identities=19% Similarity=0.291 Sum_probs=81.3
Q ss_pred Cccc-hhhhHHHHHHHhhcC-----------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 193 DLVG-VECRIKEIELLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 193 ~~vG-r~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
..|| -+..++++.+.+... -..+.-|.++|++|.|||-||+++|+. ..+.|+.+.+.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~firvsgs------ 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGS------ 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEEechH------
Confidence 4454 455666666544321 134556889999999999999999973 33445554321
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHh----hhcCCceEEEEeCCCChH------------H----HHHHHcccCC
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSK----RFSCKKVLIVFDDVTHLK------------Q----IEFLIGRLDW 320 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~------------~----~~~l~~~l~~ 320 (940)
++.++.+. +..+++++ .-.+.+-.+.+|.++... . .-+++..+..
T Consensus 216 --elvqk~ig-------------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 216 --ELVQKYIG-------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred --HHHHHHhh-------------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 22222211 11112222 113456788888875421 1 1223444443
Q ss_pred C--CCCcEEEEEeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 321 F--ASGSRIIITTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 321 ~--~~gs~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
+ ...-+||+.|-.-+++. .-..+..++.++-+++...+.++-+.
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 3 34567777765444432 22345677888888887777776554
No 308
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.3 Score=53.07 Aligned_cols=150 Identities=18% Similarity=0.144 Sum_probs=77.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
.|--.++|++|.|||++..++|+.+ ++-++.-...+.... .+ ++.++...
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n---~d-Lr~LL~~t---------------------- 284 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLD---SD-LRHLLLAT---------------------- 284 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCc---HH-HHHHHHhC----------------------
Confidence 3457799999999999999999855 233332222111111 11 22222221
Q ss_pred CCceEEEEeCCCChHH--------------------HHHHHcc---cCCCCCCcEEE-EEeCChhhhhh-----CCCCcE
Q 002299 295 CKKVLIVFDDVTHLKQ--------------------IEFLIGR---LDWFASGSRII-ITTRDKQVLSN-----CRVDQI 345 (940)
Q Consensus 295 ~~~~LlVlDdv~~~~~--------------------~~~l~~~---l~~~~~gs~ii-iTtR~~~~~~~-----~~~~~~ 345 (940)
..+-+||+.|++..-+ +.-++.. +.....+-||| .||-..+.+.. -+.+..
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 1344777777754311 1112222 22222234665 56654443221 133456
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhh
Q 002299 346 YDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFL 399 (940)
Q Consensus 346 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 399 (940)
+.+.-=+.+.-..|+.+...... +. .+..+|.+...|.-+.=..++..+
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 77888888888888888773322 22 344555555555544444444443
No 309
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.86 E-value=0.041 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+|.++|++|+||||+|+.++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987653
No 310
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.86 E-value=0.043 Score=61.83 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+..
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~ 130 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG 130 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 456666665444455689999999999999999998876554445677753
No 311
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.093 Score=57.45 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999988664
No 312
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.85 E-value=0.14 Score=55.27 Aligned_cols=45 Identities=22% Similarity=0.137 Sum_probs=33.0
Q ss_pred ccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH
Q 002299 194 LVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 194 ~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
+||....+.++.+.+..-.....-|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777776665543333334789999999999999998764
No 313
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.84 E-value=0.063 Score=57.39 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=25.5
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
...+++++|++|+||||++..++..++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999877654
No 314
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.84 E-value=0.04 Score=51.65 Aligned_cols=103 Identities=20% Similarity=0.178 Sum_probs=53.7
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
-.+++|.|..|.|||||++.++.... ...+.+++.......-... -...+...-.+-+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHHh
Confidence 35799999999999999999987432 2344455432100000000 0111111222334445
Q ss_pred CCceEEEEeCCCC---hHHHHHHHcccCCCCCCcEEEEEeCChhhhh
Q 002299 295 CKKVLIVFDDVTH---LKQIEFLIGRLDWFASGSRIIITTRDKQVLS 338 (940)
Q Consensus 295 ~~~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~ 338 (940)
.++=++++|+-.. ....+.+...+... +..||++|.+.....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 5667999998632 22222222222211 346888888766543
No 315
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.78 E-value=0.09 Score=55.50 Aligned_cols=52 Identities=13% Similarity=-0.029 Sum_probs=35.2
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEecchhhhccCCHHHHHHHHHHH
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHNVREAQETGGLAHLRQQLLST 271 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 271 (940)
.-.++.|.|.+|+||||++.+++.....+ -..++|+.. +.....+...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~------E~~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL------EEPVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc------ccCHHHHHHHHHHH
Confidence 34578899999999999999998866444 345667653 22334455555444
No 316
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.78 E-value=0.04 Score=57.37 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=57.3
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCC
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKN 280 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 280 (940)
++.+..++.. ...+|.|.|..|.||||++..+...+...-..++.+.+..+.. +..+ .++.- ...
T Consensus 69 ~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~----~~~~-----~q~~v---~~~ 133 (264)
T cd01129 69 LEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ----IPGI-----NQVQV---NEK 133 (264)
T ss_pred HHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec----CCCc-----eEEEe---CCc
Confidence 3445555432 2357999999999999999998876643222233333221111 1000 00000 011
Q ss_pred chhhhHHHHHhhhcCCceEEEEeCCCChHHHHHHH
Q 002299 281 FPYIILNFQSKRFSCKKVLIVFDDVTHLKQIEFLI 315 (940)
Q Consensus 281 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~ 315 (940)
......+.++..++..+=.++++++.+.+....+.
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 11234566777777788899999999988755443
No 317
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.76 E-value=0.03 Score=57.99 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh--cc----ccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS--KH----FEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~----f~~~~~~~~ 251 (940)
+.|.++|..+-..-.+.=|+|.+|+|||+||..++-.+. .. =..++|++.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT 80 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT 80 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC
Confidence 456666654333445789999999999999998876432 11 234778764
No 318
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.75 E-value=0.0083 Score=55.06 Aligned_cols=22 Identities=50% Similarity=0.756 Sum_probs=20.5
Q ss_pred EEEEecCCchhhHHHHHHHHHh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~ 239 (940)
|+|.|.+|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 319
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.75 E-value=0.0069 Score=53.87 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=21.4
Q ss_pred EEEEecCCchhhHHHHHHHHHhhccccceE
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMSKHFEGSY 247 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~ 247 (940)
|.|+|.+|+||||+|+.++..+...|..+-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq 31 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ 31 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEE
Confidence 679999999999999999998887776443
No 320
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.028 Score=58.08 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=38.6
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecc
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNV 252 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 252 (940)
.+..+|..+-..-+++=|+|+.|.||||+|.+++-.....-..++|++..
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 34445554445678899999999999999999988776666688999753
No 321
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.72 E-value=0.054 Score=55.23 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=31.0
Q ss_pred HHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 204 IELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 204 l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
+.+.+..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 13 ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 33344333334458999999999999999887765533334556664
No 322
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.016 Score=56.88 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=26.7
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..+.+|+|.|.+|+||||+|++++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456799999999999999999999988755
No 323
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.69 E-value=0.035 Score=54.05 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=26.0
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
++.+.|++|+||||++..++..+.+.-..++.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6789999999999999999987765522334443
No 324
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.68 E-value=0.053 Score=57.22 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=24.6
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999998876543
No 325
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.68 E-value=0.064 Score=60.43 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+..
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~ 116 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG 116 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 455666665443445689999999999999999999877544445677753
No 326
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.66 E-value=0.01 Score=59.01 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=23.5
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
||+|.|.+|+||||+|++++..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 327
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.61 E-value=0.082 Score=52.44 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=56.6
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCc
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNF 281 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 281 (940)
+.+...+.. +-+++.|.|.+|.||||+++.+...+...-..++++.-.. .....+........ .
T Consensus 8 ~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~---------~Aa~~L~~~~~~~a---~- 71 (196)
T PF13604_consen 8 EAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN---------KAAKELREKTGIEA---Q- 71 (196)
T ss_dssp HHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH---------HHHHHHHHHHTS-E---E-
T ss_pred HHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH---------HHHHHHHHhhCcch---h-
Confidence 344444442 3367889999999999999998886655433333332211 11112222211000 0
Q ss_pred hhhhHHHHHhhh---------cCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCChhh
Q 002299 282 PYIILNFQSKRF---------SCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDKQV 336 (940)
Q Consensus 282 ~~~~~~~l~~~l---------~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~~ 336 (940)
.+...+.... ..++-+||+|++...+ ++..+..... ..|+++|+.--..+.
T Consensus 72 --Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 72 --TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp --EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred --hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 0111111100 1234599999986544 4666655543 357888887655543
No 328
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.60 E-value=0.069 Score=54.47 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=34.3
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
.+.+++..+-..-.++.|.|.+|+|||++|..++.....+=..++|+..
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4455554443345689999999999999999998765444445666653
No 329
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.59 E-value=0.087 Score=60.07 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=40.7
Q ss_pred CCccchhhhHHHHHHHhhcC---CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 192 KDLVGVECRIKEIELLLRTG---SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
.+++-=.+-++++..||... ....+++.+.|++|+||||.++.+++.+ .|+..-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEec
Confidence 34444455678888888652 2345789999999999999999999875 35555564
No 330
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.58 E-value=0.06 Score=57.40 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh------ccccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS------KHFEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------~~f~~~~~~~~ 251 (940)
..|.++|..+-..-.++-|+|++|+|||+|+..++-... ..-..++|++.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdt 138 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDT 138 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEc
Confidence 455666765445567889999999999999998775322 11246788864
No 331
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.56 E-value=0.035 Score=54.16 Aligned_cols=35 Identities=29% Similarity=0.217 Sum_probs=26.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
..+++|.|++|+||||+|+.++..+...-..+.++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45899999999999999999999775432233444
No 332
>PRK05973 replicative DNA helicase; Provisional
Probab=95.56 E-value=0.066 Score=54.22 Aligned_cols=37 Identities=16% Similarity=-0.023 Sum_probs=28.7
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3457889999999999999999886655545566664
No 333
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.56 E-value=0.2 Score=57.88 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=40.2
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
....++|+...++++.+.+..-.....-|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35679999999988887776544344458899999999999999998854
No 334
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.53 E-value=0.014 Score=64.56 Aligned_cols=46 Identities=24% Similarity=0.222 Sum_probs=38.3
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
..++||++.++.+...+..+.. |.|.|++|+|||++|+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag~h----VLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGES----VFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCCC----EEEECCCChhHHHHHHHHHHHhcc
Confidence 4799999999998877765433 889999999999999999986543
No 335
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.53 E-value=0.46 Score=50.79 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=33.3
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCCCCC-chhhHHHHHHHHHhcCChhhH
Q 002299 345 IYDVKELVDVDALKLFSRCAFGEDDPT-ASYTKLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 392 (940)
+++|++++.+|+..++....-.+-... ...+...+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764333222 233445566666679999654
No 336
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.12 Score=56.21 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=27.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhcccc--ceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFE--GSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~ 250 (940)
.++++++|+.|+||||++.+++.+...++. .+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 468999999999999999999987654443 344443
No 337
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.47 E-value=0.063 Score=52.05 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=24.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
.+++|.|..|.|||||++.++.... ...+.+++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~ 58 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEW 58 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEE
Confidence 4799999999999999999887442 22344444
No 338
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.47 E-value=0.012 Score=46.97 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+++|.|..|+||||+|+.+.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 339
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.017 Score=65.32 Aligned_cols=52 Identities=31% Similarity=0.380 Sum_probs=42.4
Q ss_pred CCccchhhhHHHHHHHhhc----CCCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 192 KDLVGVECRIKEIELLLRT----GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
.+-+|+++-.+++.+++.- ++-+-.+++++|++|||||.+|+.++..+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 3458999999999888754 334567999999999999999999999776555
No 340
>PRK13695 putative NTPase; Provisional
Probab=95.44 E-value=0.046 Score=53.21 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=21.3
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.++|.|.+|+|||||++.++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999988765
No 341
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.42 E-value=0.04 Score=57.29 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=23.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
+.|.|+|.+|+||||+|+++...+.+.-..+.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4688999999999999999998776532233444
No 342
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.38 E-value=0.11 Score=50.73 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=25.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.+++|.|..|.|||||++.++..... ..+.+++.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 62 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLD 62 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEEC
Confidence 46999999999999999999875432 23444443
No 343
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.37 E-value=0.064 Score=51.68 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
-.+++|.|..|.|||||++.++...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998744
No 344
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.37 E-value=0.074 Score=55.28 Aligned_cols=116 Identities=17% Similarity=0.095 Sum_probs=62.5
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCC-----CCCCchhhhHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDR-----NVKNFPYIILNFQ 289 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~~~~~~l 289 (940)
..-++|.|+.|.|||||.+.++..+... .+.+++... .........++... ...+.... ...+.... ...+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~k-~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGC-VNGVPQHDVGIRTDVLDGCPK-AEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHH-hcccccccccccccccccchH-HHHH
Confidence 4678999999999999999999866533 333343211 00000011122211 11111110 00011111 1112
Q ss_pred Hhhh-cCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhh
Q 002299 290 SKRF-SCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVL 337 (940)
Q Consensus 290 ~~~l-~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~ 337 (940)
...+ ...+=++|+|.+...+.+..+...+. .|..||+||.+..+.
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 2222 24778999999988777776655542 577899999976553
No 345
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.36 E-value=0.024 Score=51.47 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.4
Q ss_pred hHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 200 RIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 200 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+.+++.+.+...-....+|.+.|.-|.||||+++.+++.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3344444443322334579999999999999999999865
No 346
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.36 E-value=0.14 Score=62.95 Aligned_cols=194 Identities=18% Similarity=0.200 Sum_probs=95.4
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccc----cceEEEecchhhhccCCHH--HHHHHHHHHhhCCCCCCCchhhhHHHHH
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHF----EGSYFAHNVREAQETGGLA--HLRQQLLSTLLDDRNVKNFPYIILNFQS 290 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 290 (940)
-+.|+|.+|.||||+...++-....+. +..+|+..-.......... .+..-+...+....... .......
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~----~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAK----QLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcc----hhhHHHH
Confidence 588999999999999999887543322 2233332211000001111 22222222222222111 2222225
Q ss_pred hhhcCCceEEEEeCCCChHH------HHHHHcccCCCCCCcEEEEEeCChhhhhhCCCCcEEEcCCCCHHHHHHHHH---
Q 002299 291 KRFSCKKVLIVFDDVTHLKQ------IEFLIGRLDWFASGSRIIITTRDKQVLSNCRVDQIYDVKELVDVDALKLFS--- 361 (940)
Q Consensus 291 ~~l~~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~--- 361 (940)
+.+...++++.+|.++.... ... ...+...-+.+++|+|+|....-.....-...++..+.++.-.+...
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~-i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIRE-INKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHH-HHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 67778999999999876443 222 11222234689999999976543332223345555555544332222
Q ss_pred -----HhhcCCCCCC--chhhHH---HHHHHHHhcCChhhHHHHhhhhc------CCCHHHHHHHHHHHh
Q 002299 362 -----RCAFGEDDPT--ASYTKL---THEAVKYAKGVPLALKVLGSFLS------GRRKEEWKSAMRKLE 415 (940)
Q Consensus 362 -----~~~~~~~~~~--~~~~~~---~~~i~~~~~g~PLal~~~~~~l~------~~~~~~w~~~l~~l~ 415 (940)
...++..... .....+ ..+-++.....|++|...+..-. ....+-|+.+++.+-
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 379 LDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 2222221111 000111 12333444778998888774433 224556666666543
No 347
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.36 E-value=0.043 Score=55.58 Aligned_cols=124 Identities=18% Similarity=0.088 Sum_probs=66.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhh-ccCCHHHHHHHHHHHhhCCCC------CCCchhhh-H
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQ-ETGGLAHLRQQLLSTLLDDRN------VKNFPYII-L 286 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~------~~~~~~~~-~ 286 (940)
-.+++|+|..|.||||+++.+..-..... +.+++....-.. ......+...+++..+..... ..-+..+. .
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 45799999999999999999998554343 334443211000 011222334445554432221 11122222 2
Q ss_pred HHHHhhhcCCceEEEEeCCCCh------HHHHHHHcccCCCCCCcEEEEEeCChhhhhhC
Q 002299 287 NFQSKRFSCKKVLIVFDDVTHL------KQIEFLIGRLDWFASGSRIIITTRDKQVLSNC 340 (940)
Q Consensus 287 ~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~ 340 (940)
-.+.+.+.-++=++|.|..-.. .++-.++..+. ...|-..+..|.+-.++..+
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 2445566778899999986332 22223333222 13455677777777666554
No 348
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.35 E-value=0.098 Score=51.22 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=59.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHH------HHHHHHHHhhCC-----CCC-CCch
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAH------LRQQLLSTLLDD-----RNV-KNFP 282 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~------l~~~l~~~~~~~-----~~~-~~~~ 282 (940)
-.+++|.|..|.|||||++.++.... ...+.+++....- . ...... ...+++..+.-. ... -..-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~-~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDL-A-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEC-C-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 35799999999999999999987543 3345555532110 0 001111 111122222111 111 1111
Q ss_pred hhhHHHHHhhhcCCceEEEEeCCCC---hHH---HHHHHcccCCCCCCcEEEEEeCChhhh
Q 002299 283 YIILNFQSKRFSCKKVLIVFDDVTH---LKQ---IEFLIGRLDWFASGSRIIITTRDKQVL 337 (940)
Q Consensus 283 ~~~~~~l~~~l~~~~~LlVlDdv~~---~~~---~~~l~~~l~~~~~gs~iiiTtR~~~~~ 337 (940)
+...-.+-+.+...+-++++|+-.. ... +..+...+.. ..+..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHH
Confidence 2222234445566778999998632 222 2222222211 1267888888887654
No 349
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.33 E-value=0.086 Score=56.88 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc------cceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF------EGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~ 251 (940)
..+.++|..+-..-.++-|+|++|+|||++|.+++....... ..++|++.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 445555654444567889999999999999999987543221 36788864
No 350
>PTZ00301 uridine kinase; Provisional
Probab=95.33 E-value=0.016 Score=57.88 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=24.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
..+|+|.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775544
No 351
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.082 Score=51.27 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=62.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC--C-------CCchhhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN--V-------KNFPYII 285 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~-------~~~~~~~ 285 (940)
-.+++|.|..|.|||||.+.++.... ...+.+++.... .. ........+.+ .-+..... . -...+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~-~~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LR-DLDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hh-hcCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHH
Confidence 35799999999999999999987543 234555543211 00 00111111100 00000000 0 0001111
Q ss_pred HHHHHhhhcCCceEEEEeCCCC---hH---HHHHHHcccCCCCCCcEEEEEeCChhhhhhCCCCcEEEc
Q 002299 286 LNFQSKRFSCKKVLIVFDDVTH---LK---QIEFLIGRLDWFASGSRIIITTRDKQVLSNCRVDQIYDV 348 (940)
Q Consensus 286 ~~~l~~~l~~~~~LlVlDdv~~---~~---~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~~~~~l 348 (940)
.-.+.+.+..++-++++|+-.. .. .+..++..+ ..+..||++|.+...... .++++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1223344556778999998632 12 233333332 235678888988766543 3444444
No 352
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.31 E-value=0.054 Score=61.63 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=45.3
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKR 292 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 292 (940)
..-++..++|++|+||||||.-+++.- .|. ++=+. . ++......+-..+...+.......
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYs-VvEIN-A---SDeRt~~~v~~kI~~avq~~s~l~------------- 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYS-VVEIN-A---SDERTAPMVKEKIENAVQNHSVLD------------- 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--Cce-EEEec-c---cccccHHHHHHHHHHHHhhccccc-------------
Confidence 446789999999999999999999843 222 12222 2 333333344444433332221100
Q ss_pred hcCCceEEEEeCCCChH
Q 002299 293 FSCKKVLIVFDDVTHLK 309 (940)
Q Consensus 293 l~~~~~LlVlDdv~~~~ 309 (940)
..+++.-||+|.++...
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 12478889999997644
No 353
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.30 E-value=0.011 Score=52.05 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=22.0
Q ss_pred EEEEecCCchhhHHHHHHHHHhhccc
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
|-|+|.+|+|||++|..++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998766543
No 354
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.29 E-value=0.012 Score=58.67 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=30.3
Q ss_pred cCCCceeeCCCCCCCCcCCCcccCCCccEEeccCC--CCCccccccccCCCcccEEEecCCC
Q 002299 621 LVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGC--SSLMETHSSIQYLNKLAFLYLVSCE 680 (940)
Q Consensus 621 l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~--~~~~~~~~~~~~l~~L~~L~l~~~~ 680 (940)
+..|+.|++.++. ++.+..|-.+++|++|.++.| .....++.....+++|++|++++|.
T Consensus 42 ~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4444555544443 223334455566666666666 3334444444455666666666664
No 355
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.29 E-value=0.21 Score=55.83 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=27.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh--ccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS--KHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 250 (940)
.++++++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999887665 3333455554
No 356
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.28 E-value=0.2 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987553
No 357
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.19 Score=54.01 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=28.4
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
+.++++|+|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4678999999999999999999886644433455554
No 358
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.22 E-value=0.058 Score=56.03 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.2
Q ss_pred EEEEecCCchhhHHHHHHHHHhhcc
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
|.++|.+|+||||+|++++..+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999877544
No 359
>PTZ00494 tuzin-like protein; Provisional
Probab=95.22 E-value=4.4 Score=44.21 Aligned_cols=165 Identities=12% Similarity=0.002 Sum_probs=93.0
Q ss_pred CCCCCCccchhhhHHHHHHHhhc-CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRT-GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (940)
+.....+|.|+.+-..+.+.|.. +...+|++.+.|.-|.||++|.+....+- + -..+|+++ +. .+..+..+.+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE--~-~paV~VDV-Rg--~EDtLrsVVK 440 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE--G-VALVHVDV-GG--TEDTLRSVVR 440 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc--C-CCeEEEEe-cC--CcchHHHHHH
Confidence 45678899999998888887765 34678999999999999999999877642 2 34556654 21 2233444444
Q ss_pred HHHHHhhCCCCCCCchhhhHHHHH-------hhhcCCceEEEEe--CCCChHHHHHHHcccCCCCCCcEEEEEeCChhhh
Q 002299 267 QLLSTLLDDRNVKNFPYIILNFQS-------KRFSCKKVLIVFD--DVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVL 337 (940)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~l~-------~~l~~~~~LlVlD--dv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~ 337 (940)
.+ ..... +.-.+..+.+. ....++.-+||+- +-.+...+-.=...+.....-|+|++----+.+-
T Consensus 441 AL----gV~nv--e~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 441 AL----GVSNV--EVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred Hh----CCCCh--hhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhc
Confidence 33 22221 11112222222 2234555566653 2222222111111122224457777654333221
Q ss_pred hh---CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 338 SN---CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 338 ~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
.. ...-..|.++.++.++|.++-.+..
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 11 1223579999999999999876543
No 360
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.21 E-value=0.13 Score=48.86 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=37.2
Q ss_pred hhHHHHHhhhcCCceEEEEeC----CCChHHHHH--HHcccCCCCCCcEEEEEeCChhhhhhCC
Q 002299 284 IILNFQSKRFSCKKVLIVFDD----VTHLKQIEF--LIGRLDWFASGSRIIITTRDKQVLSNCR 341 (940)
Q Consensus 284 ~~~~~l~~~l~~~~~LlVlDd----v~~~~~~~~--l~~~l~~~~~gs~iiiTtR~~~~~~~~~ 341 (940)
+....+.+.+-+++-+|+-|. ++..-.|+- +...++ ..|..|+++|.+..+...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 344456666778888999986 343333432 333333 57999999999998877653
No 361
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.19 E-value=0.053 Score=65.35 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=37.4
Q ss_pred CCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 191 NKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
...++|+...+.++.+.+..-.....-|.|+|..|+|||++|+.+.+.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3479999988888866655332233458899999999999999998743
No 362
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.19 E-value=0.057 Score=54.37 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
.++.+.+.....+..+|+|.|+||+|||||.-++...+.++
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444444567899999999999999999999877654
No 363
>PRK00625 shikimate kinase; Provisional
Probab=95.19 E-value=0.015 Score=56.03 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.5
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 364
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=1.4 Score=46.60 Aligned_cols=166 Identities=10% Similarity=0.044 Sum_probs=89.1
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc--------c-cc-ceEEEecchhhhccCCHHHHHHHHHH
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK--------H-FE-GSYFAHNVREAQETGGLAHLRQQLLS 270 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--------~-f~-~~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (940)
++.+.+.+..+ .-.++..++|..|+||+++|.++++.+-. . .+ ...+++..+ ..-.+.++. ++..
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~~i~vd~Ir-~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---KDLSKSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---CcCCHHHHH-HHHH
Confidence 34455555432 23466779999999999999999997611 1 11 122221000 011111111 1211
Q ss_pred HhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEEEeC-Chhhhhh-CCCCcEE
Q 002299 271 TLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIIITTR-DKQVLSN-CRVDQIY 346 (940)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iiiTtR-~~~~~~~-~~~~~~~ 346 (940)
.+.-.. .-.+++=++|+|+++.... ...++..+....+.+.+|++|. ...+.+. ......+
T Consensus 80 ~~~~~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 80 KLYFSS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred HhccCC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 111000 0013555888999876543 5556555555566777776554 3444433 2345789
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 347 DVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 347 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
++.++++++..+.+.... . + ++.++.++...+|.=-|+..
T Consensus 145 ~f~~l~~~~l~~~l~~~~----~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 145 NVKEPDQQKILAKLLSKN----K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred ECCCCCHHHHHHHHHHcC----C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 999999999988776541 1 1 12345555556652234443
No 365
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.18 E-value=0.051 Score=59.07 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=37.4
Q ss_pred CCccchhhhHHHHHHHhhcC------------CCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 192 KDLVGVECRIKEIELLLRTG------------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
..+||.++..+.+...+... ....+-|.++|++|+|||++|+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46788877777775444321 11235688999999999999999999775544
No 366
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.18 E-value=0.1 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
-.+++|.|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35799999999999999998863
No 367
>PRK10867 signal recognition particle protein; Provisional
Probab=95.17 E-value=0.12 Score=57.56 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
.+.+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46789999999999999999998877655
No 368
>PRK08233 hypothetical protein; Provisional
Probab=95.16 E-value=0.016 Score=57.01 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|+|.|.+|+||||+|..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998663
No 369
>PRK03839 putative kinase; Provisional
Probab=95.16 E-value=0.016 Score=56.83 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.7
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999764
No 370
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.14 E-value=0.091 Score=55.56 Aligned_cols=99 Identities=20% Similarity=0.143 Sum_probs=55.2
Q ss_pred HHHHHHHhhc-CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC--
Q 002299 201 IKEIELLLRT-GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN-- 277 (940)
Q Consensus 201 ~~~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-- 277 (940)
...|...|.. +-..-+++-|+|+.|+||||||..+.......-..++|++.-. .+. ...+..++-+..
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~------~ld---~~~a~~lGvdl~rl 108 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEH------ALD---PEYAESLGVDLDRL 108 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS------------HHHHHHTT--GGGE
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcc------cch---hhHHHhcCccccce
Confidence 3455556642 2234568999999999999999999887766666788887522 111 112222211111
Q ss_pred ---CCCchhhhHHHHHhhhcCC-ceEEEEeCCCCh
Q 002299 278 ---VKNFPYIILNFQSKRFSCK-KVLIVFDDVTHL 308 (940)
Q Consensus 278 ---~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~ 308 (940)
.+...++........++.. --++|+|-|...
T Consensus 109 lv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 109 LVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred EEecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 2233445555555555443 358899998543
No 371
>PRK06762 hypothetical protein; Provisional
Probab=95.12 E-value=0.018 Score=55.60 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=22.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+|.|.|++|+||||+|+++++++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 372
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.32 Score=55.95 Aligned_cols=93 Identities=24% Similarity=0.258 Sum_probs=54.0
Q ss_pred CccchhhhHHHHHHHhhc----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHH
Q 002299 193 DLVGVECRIKEIELLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLA 262 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 262 (940)
++=|-+....+|.+-+.. +-....-|.+||++|.|||-+|++|+....=. |+.+-+.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlSVKGP-------- 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLSVKGP-------- 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEeecCH--------
Confidence 344566666666654432 22223458899999999999999999865433 3333211
Q ss_pred HHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCC
Q 002299 263 HLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTH 307 (940)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 307 (940)
+ ++.-..++ +.+...+...+.-..++++|.||.++.
T Consensus 740 E----LLNMYVGq-----SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 E----LLNMYVGQ-----SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred H----HHHHHhcc-----hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1 11111111 222333344444455899999999865
No 373
>PRK04040 adenylate kinase; Provisional
Probab=95.10 E-value=0.022 Score=55.95 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|+|+|++|+||||+++.+++++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 374
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.07 E-value=0.047 Score=60.12 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.8
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+.+|.+.|.+|+||||+|.+++.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999865
No 375
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.06 E-value=0.021 Score=57.61 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=24.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999876
No 376
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.25 Score=48.74 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=34.7
Q ss_pred CccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 193 DLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
++=|.+-..+++.+.... +-+.++-|.++|++|.|||.||+++++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 344555555555544321 224567789999999999999999998654443
No 377
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.04 E-value=0.064 Score=51.51 Aligned_cols=116 Identities=13% Similarity=0.136 Sum_probs=58.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
.+++|.|..|.|||||.+.++.... ...+.+++.... .. ........++...-+. .-...+...-.+-+.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~-~~~~~~~~~~~i~~~~----qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS-FASPRDARRAGIAMVY----QLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC-cCCHHHHHhcCeEEEE----ecCHHHHHHHHHHHHHhc
Confidence 4699999999999999999987442 344555554321 00 0111111110000000 011112222233444556
Q ss_pred CceEEEEeCCCC---hHHHHHHHcccCCC-CCCcEEEEEeCChhhhh
Q 002299 296 KKVLIVFDDVTH---LKQIEFLIGRLDWF-ASGSRIIITTRDKQVLS 338 (940)
Q Consensus 296 ~~~LlVlDdv~~---~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~ 338 (940)
++=++++|+... ....+.+...+... ..|..||++|.+...+.
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 677999998732 22222222222111 24678889998876443
No 378
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.99 E-value=0.059 Score=55.97 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=29.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceE
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSY 247 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~ 247 (940)
.+..+|.|.|.+|+|||||+..+...+.......+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 46789999999999999999999998876654433
No 379
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.99 E-value=0.11 Score=55.87 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh--c----cccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS--K----HFEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~----~f~~~~~~~~ 251 (940)
..|.++|..+-..-.++-|+|.+|+|||+|+..++-... . .-..++|++.
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdT 168 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDT 168 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEc
Confidence 445556654444567888999999999999998874322 1 1246788874
No 380
>PRK06217 hypothetical protein; Validated
Probab=94.99 E-value=0.08 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.|.|.|.+|+||||+|++++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 381
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.97 E-value=0.13 Score=49.97 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=25.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.+++|.|..|.|||||++.++.... ...+.+++.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~ 62 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLD 62 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEEC
Confidence 4799999999999999999987543 234444443
No 382
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.96 E-value=0.0016 Score=75.49 Aligned_cols=62 Identities=29% Similarity=0.337 Sum_probs=37.7
Q ss_pred ccCCCccEEeccCCCCCcc--ccccccCCCcccEEEecCC-CCCcccCC-----ccCCCCCCEEEecCCC
Q 002299 642 SLARNLESLDLWGCSSLME--THSSIQYLNKLAFLYLVSC-ESLRSLPH-----TIRSESLFELRLSGCT 703 (940)
Q Consensus 642 ~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~l~~-----~~~l~~L~~L~l~~~~ 703 (940)
..+++|+.|.+.+|..+.. .-.....+++|+.|++++| ......+. ...+++|+.|++++|.
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 3478888888888866665 3355667888888888873 22221111 1124555666665554
No 383
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.96 E-value=0.02 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEecCCchhhHHHHHHHHHh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~ 239 (940)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 384
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.94 E-value=0.072 Score=61.04 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=39.7
Q ss_pred hHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 200 RIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 200 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
-+.++.++|..+-..-.++.|.|++|+|||||+.+++.....+-+.++|+.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356677777665555678999999999999999999987766656677764
No 385
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.94 E-value=0.037 Score=56.63 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.1
Q ss_pred CCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 212 SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
.....+++|.|+.|.|||||++.++..++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999998776543
No 386
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.92 E-value=0.17 Score=49.70 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
...++.|.|.+|+||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999987643
No 387
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.92 E-value=0.62 Score=51.71 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=32.7
Q ss_pred hhHHHHHHHhh-----cCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 199 CRIKEIELLLR-----TGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 199 ~~~~~l~~~l~-----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+-++++..||. ...-+.+++.|+|++|+||||..+.++..+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34677777887 344567899999999999999999988754
No 388
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.90 E-value=0.16 Score=64.67 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.6
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+-|.++|++|.|||.||+++|...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35568899999999999999999864
No 389
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.89 E-value=0.19 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.5
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
..|+++|++|+|||||...+..
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhc
Confidence 4578999999999999999875
No 390
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.88 E-value=0.063 Score=57.55 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=58.3
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
...+.|.|..|.||||+++.+...+.... .++.+....+..... .....-...........-...+.+...++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYVHLFYSKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEEEEEecCCCCCcCccCHHHHHHHHhc
Confidence 35799999999999999999987654332 233333222211110 00000000000001111234456666777
Q ss_pred CCceEEEEeCCCChHHHHHHHcccCCCCCCcE-EEEEeCChh
Q 002299 295 CKKVLIVFDDVTHLKQIEFLIGRLDWFASGSR-IIITTRDKQ 335 (940)
Q Consensus 295 ~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~-iiiTtR~~~ 335 (940)
..+=.+|+|.+...+.++.+... . .|.. ++.|+....
T Consensus 217 ~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 217 MRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGS 254 (308)
T ss_pred CCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCC
Confidence 78889999999887665543322 2 2332 466666543
No 391
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.87 E-value=0.82 Score=51.63 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=46.4
Q ss_pred ccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh-ccccceEEEecchhhhccCCHHHHHHHHHHHh
Q 002299 194 LVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS-KHFEGSYFAHNVREAQETGGLAHLRQQLLSTL 272 (940)
Q Consensus 194 ~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 272 (940)
..|...-...|.+++. +-..-.++.|.|.+|+|||++|..++.... .+-..++|+.. +.....+..+++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl------Em~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL------EMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC------CCCHHHHHHHHHHHH
Confidence 4455555566666654 333445788999999999999999997654 32234555542 345566666666554
Q ss_pred h
Q 002299 273 L 273 (940)
Q Consensus 273 ~ 273 (940)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 392
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=94.84 E-value=0.079 Score=59.58 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEEEecCCchhhHHHHHHHHH
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.|+|+|.+|+|||||...+...
T Consensus 205 kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 205 KLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999863
No 393
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.12 Score=58.03 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..++++|+|.+|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999998866544
No 394
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.83 E-value=0.2 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
++.|.|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998863
No 395
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.83 E-value=0.038 Score=54.43 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=51.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC-CCCchhhhHHHHHhhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN-VKNFPYIILNFQSKRF 293 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l 293 (940)
...++|.|..|.||||+++.+...+... ...+.+....+..... .....-...... .........+.++..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWVRLVTRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEEEEEEecCCCCCCCccCHHHHHHHHh
Confidence 3579999999999999999998866433 2233332211110000 000000000000 0111123455666667
Q ss_pred cCCceEEEEeCCCChHHHHHHH
Q 002299 294 SCKKVLIVFDDVTHLKQIEFLI 315 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~~~~~~l~ 315 (940)
+..+=.++++.+.+.+.++.+.
T Consensus 98 R~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHHH
Confidence 7778899999998887665443
No 396
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.78 E-value=0.07 Score=58.04 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=38.5
Q ss_pred CCccchhhhHHHHHHHhhcC--------C----CCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 192 KDLVGVECRIKEIELLLRTG--------S----AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~--------~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
..++|.+..++.+..++... . ...+.+.++|++|+|||++|+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 46888888888877666320 0 1135689999999999999999999765443
No 397
>PRK06547 hypothetical protein; Provisional
Probab=94.75 E-value=0.028 Score=54.20 Aligned_cols=27 Identities=41% Similarity=0.562 Sum_probs=24.0
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
....+|+|.|.+|+||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999999864
No 398
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.75 E-value=0.026 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...|.|+|++|+||||+|+++++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999763
No 399
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.75 E-value=0.11 Score=55.14 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=40.7
Q ss_pred CCCccchhhhHHHH---HHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEE
Q 002299 191 NKDLVGVECRIKEI---ELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYF 248 (940)
Q Consensus 191 ~~~~vGr~~~~~~l---~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~ 248 (940)
...+||.....+.. .+++..+.-.-+.+.|.|++|.|||+||..+++.+....+.+..
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 46899987766553 56666554345778899999999999999999999877765543
No 400
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.74 E-value=0.079 Score=55.43 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=37.9
Q ss_pred HHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 205 ELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 205 ~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
.+.+..+-..-+++.|+|.+|+|||++|.+++.+...+...++|+..
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~ 59 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST 59 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 33444444566789999999999999999999988888888899864
No 401
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.72 E-value=0.031 Score=56.18 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.8
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...+|+|.|++|+||||||+.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998654
No 402
>PRK13947 shikimate kinase; Provisional
Probab=94.66 E-value=0.025 Score=54.97 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.5
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
-|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999987443
No 403
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.66 E-value=0.04 Score=55.40 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999999884
No 404
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.65 E-value=0.028 Score=55.65 Aligned_cols=26 Identities=31% Similarity=0.180 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+..+|+|.|++|+||||+|+.++.++
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999865
No 405
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.21 Score=47.50 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=24.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEE
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYF 248 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~ 248 (940)
..+.|.|+.|+|||||.+.++--.+..-..+.|
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~ 61 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRPDAGEVYW 61 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEe
Confidence 358899999999999999998755444333434
No 406
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.65 E-value=0.32 Score=46.06 Aligned_cols=24 Identities=33% Similarity=0.228 Sum_probs=21.0
Q ss_pred CeeEEEEEecCCchhhHHHHHHHH
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
..+|-.|+|..|+||+||..+++-
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 457888999999999999998874
No 407
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.64 E-value=0.15 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEecCCchhhHHHHHHHHHh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~ 239 (940)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999865
No 408
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.63 E-value=0.068 Score=55.61 Aligned_cols=57 Identities=25% Similarity=0.241 Sum_probs=43.3
Q ss_pred CCCCccchhhhHHH---HHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccce
Q 002299 190 DNKDLVGVECRIKE---IELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGS 246 (940)
Q Consensus 190 ~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 246 (940)
..+.+||..+..+. +.+++..+.-.-+.|.|.|++|.|||+||..+++.+...-+.+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 45689997765544 4567766654567799999999999999999999987654433
No 409
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.027 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.5
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 45799999999999999999999775
No 410
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.59 E-value=0.95 Score=47.06 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=26.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
..+++++|.+|+||||++..++..+..+-..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 368999999999999999999887654323344443
No 411
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.59 E-value=0.08 Score=50.12 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=44.2
Q ss_pred EEecCCchhhHHHHHHHHHhhccccceEEEec---chhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC-
Q 002299 220 IWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN---VREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC- 295 (940)
Q Consensus 220 I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~- 295 (940)
|.|++|+||||+|+.++.++ .| ..++. ++....... .+..++-..+... ..-..+...+.+..++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~---~~is~~~llr~~~~~~s--~~g~~i~~~l~~g--~~vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GL---VHISVGDLLREEIKSDS--ELGKQIQEYLDNG--ELVPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TS---EEEEHHHHHHHHHHTTS--HHHHHHHHHHHTT--SS--HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhc--Cc---ceechHHHHHHHHhhhh--HHHHHHHHHHHhh--ccchHHHHHHHHHHHHhhh
Confidence 68999999999999999875 22 23322 111111111 1112222112111 122333455555555543
Q ss_pred -CceEEEEeCCC-ChHHHHHHHc
Q 002299 296 -KKVLIVFDDVT-HLKQIEFLIG 316 (940)
Q Consensus 296 -~~~LlVlDdv~-~~~~~~~l~~ 316 (940)
...-+|||+.- +.++.+.+..
T Consensus 72 ~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 72 PCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GTTTEEEEESB-SSHHHHHHHHH
T ss_pred cccceeeeeeccccHHHHHHHHH
Confidence 24568999994 4555555443
No 412
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.14 Score=49.76 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=26.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
-.+++|.|..|.|||||++.++.... ...+.+++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~ 60 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVL 60 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEC
Confidence 34799999999999999999887432 234555543
No 413
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.55 E-value=0.11 Score=54.85 Aligned_cols=128 Identities=17% Similarity=0.166 Sum_probs=69.3
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHH
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLST 271 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 271 (940)
+.+.-.....+.+.++|...-...+.|.|.|..|.||||++..+...+...-..++-+....+..... . ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~--------~-~~ 174 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG--------P-NQ 174 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC--------S-SE
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc--------c-ce
Confidence 34443444445666666543234567999999999999999999987655512223332211110000 0 00
Q ss_pred hhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHHHHHHHcccCCCCCCcEE-EEEeCCh
Q 002299 272 LLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRI-IITTRDK 334 (940)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~i-iiTtR~~ 334 (940)
..-. .........+.++..++..+=.+|++.+.+.+..+.+... ..|..+ +-|....
T Consensus 175 ~~~~--~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 175 IQIQ--TRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp EEEE--EETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred EEEE--eecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 0000 0012334566677778888889999999888877664433 456666 5555433
No 414
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.54 E-value=0.04 Score=53.72 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.7
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
+|+|.|.+|+||||+|+.++..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 415
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.51 E-value=0.16 Score=51.07 Aligned_cols=22 Identities=41% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEecCCchhhHHHHHHHHHh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~ 239 (940)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998754
No 416
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.50 E-value=0.053 Score=54.02 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.1
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
....+|+|+|++|+||||+|+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34578999999999999999999997754433345553
No 417
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.18 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.|.|.|.+|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999974
No 418
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.49 E-value=0.15 Score=60.30 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=57.3
Q ss_pred HHHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC--
Q 002299 201 IKEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN-- 277 (940)
Q Consensus 201 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-- 277 (940)
...|..+|. .+-..-+++-|+|.+|+||||||..++......-..++|++...... ... +..+.-+..
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~-----~~~----A~~lGvDl~~l 115 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD-----PDY----AKKLGVDTDSL 115 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh-----HHH----HHHcCCChhHe
Confidence 345666675 34345678899999999999999988776555556678886432221 112 222211110
Q ss_pred ---CCCchhhhHHHHHhhhcC-CceEEEEeCCC
Q 002299 278 ---VKNFPYIILNFQSKRFSC-KKVLIVFDDVT 306 (940)
Q Consensus 278 ---~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 306 (940)
.....+.....+....+. +.-|||+|.+.
T Consensus 116 lv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 116 LVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred EEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 223334455555554443 45689999974
No 419
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.49 E-value=0.24 Score=54.38 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.7
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
..++|.|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3599999999999999999874
No 420
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.49 E-value=0.14 Score=45.63 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=32.4
Q ss_pred Cccchhhh----HHHHHHHhhc-CCCCeeEEEEEecCCchhhHHHHHHHHH
Q 002299 193 DLVGVECR----IKEIELLLRT-GSAGVCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 193 ~~vGr~~~----~~~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
+++|-.-. ++.|...+.. .+..+-|+.++|.+|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45554433 4444455543 3456778999999999999999999885
No 421
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.45 E-value=0.033 Score=54.25 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999988753
No 422
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=1.2 Score=44.30 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=35.7
Q ss_pred CCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 191 NKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
..++=|-+..++++.+.+-. +-..+.-|..+|++|.|||-+|++.+.+....|
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 34555667777766654421 112345588999999999999999887654444
No 423
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.42 E-value=0.25 Score=48.96 Aligned_cols=25 Identities=32% Similarity=0.226 Sum_probs=21.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.++.|.|.+|+||||++..++..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999987654
No 424
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.41 E-value=0.22 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=18.3
Q ss_pred eeEEEEEecCCchhhH-HHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTT-IAGAIFT 237 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTt-La~~~~~ 237 (940)
.++|.++|+.|||||| ||+..++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999996 4554444
No 425
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.40 E-value=0.2 Score=48.92 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=54.9
Q ss_pred EEEEecCCchhhHHHHHHHHHhhcc---ccc-e-EEEecchhhhc-cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMSKH---FEG-S-YFAHNVREAQE-TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSK 291 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~~~---f~~-~-~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 291 (940)
..|.|++|+|||||.+.+++-++.. |.. . +.++-.++... ..+........--++... ....+-...+++.
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~---cpk~~gmmmaIrs 216 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDP---CPKAEGMMMAIRS 216 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhccc---chHHHHHHHHHHh
Confidence 6789999999999999999865433 432 2 22221111100 000000000000000000 0011122233332
Q ss_pred hhcCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCCh
Q 002299 292 RFSCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDK 334 (940)
Q Consensus 292 ~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 334 (940)
..+=++|+|.+-..++...+...+ ..|.+++.|..-.
T Consensus 217 ---m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 217 ---MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred ---cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 256799999998888766655542 5788887776543
No 426
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.034 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.7
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+|.|.|++|.||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 588999999999999999998663
No 427
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.34 E-value=0.37 Score=49.85 Aligned_cols=53 Identities=23% Similarity=0.106 Sum_probs=36.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEecchhhhccCCHHHHHHHHHHH
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHNVREAQETGGLAHLRQQLLST 271 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 271 (940)
..-.++.|.|.+|+|||++|.+++.....+ -..++|+.. +.....+..+++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~------E~~~~~~~~r~~~~ 64 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL------EMSKEQLLQRLLAS 64 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC------CCCHHHHHHHHHHH
Confidence 344688999999999999999988765444 345566643 34455556555443
No 428
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.32 E-value=0.21 Score=53.45 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc--cc----cceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK--HF----EGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f----~~~~~~~~ 251 (940)
...+..+|..+-....++.|+|.+|+|||||+..++....- .. ..++|++.
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdt 138 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDT 138 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEEC
Confidence 34566666555455678999999999999999988763221 11 24688764
No 429
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.66 Score=47.20 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=35.3
Q ss_pred CCccchhhhHHHHHHHh----------hcCCCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 192 KDLVGVECRIKEIELLL----------RTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l----------~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.++-|-+...+.|.+.. ......-+-|.++|++|.||+-||++|+....
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 45667777777765432 22223356799999999999999999998653
No 430
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.30 E-value=0.17 Score=51.25 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 431
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.29 E-value=0.24 Score=50.29 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=33.3
Q ss_pred HHHHhhhcCCceEEEEeCC----CCh--HHHHHHHcccCCCCCCcEEEEEeCChhhhhh
Q 002299 287 NFQSKRFSCKKVLIVFDDV----THL--KQIEFLIGRLDWFASGSRIIITTRDKQVLSN 339 (940)
Q Consensus 287 ~~l~~~l~~~~~LlVlDdv----~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~ 339 (940)
..+.+.|..++=|++||.- +-. ..+-.++..+. ..|..||++|.+-.....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 4455667888899999974 322 22445555544 338899999998755443
No 432
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.27 E-value=0.22 Score=47.79 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=19.8
Q ss_pred EEEEecCCchhhHHHHHHHHHh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 433
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.23 E-value=0.069 Score=49.99 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=29.7
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
+...+|-+.|.+|.||||+|.++++++..+.-.+..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3456899999999999999999999887765444444
No 434
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.22 E-value=0.074 Score=56.44 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=28.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
.+++.+.|.|||||||+|-+.+-+..+....+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999888776665444444
No 435
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.21 E-value=0.069 Score=58.07 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=53.7
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccc---eEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEG---SYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSK 291 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 291 (940)
...|.|+|+.|+||||+++.+...+....+. ++.+.+..+ .....+.. ....+ .+.............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~~-~~~~v-~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIET-ISASV-CQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eecccccc-cccee-eeeeccccccCHHHHHHH
Confidence 3679999999999999999999877544331 222221111 11111100 00000 000011111234566777
Q ss_pred hhcCCceEEEEeCCCChHHHHHHH
Q 002299 292 RFSCKKVLIVFDDVTHLKQIEFLI 315 (940)
Q Consensus 292 ~l~~~~~LlVlDdv~~~~~~~~l~ 315 (940)
.++..+-.+++..+.+.+..+...
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 888889999999998888765443
No 436
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.19 E-value=0.97 Score=48.41 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=33.2
Q ss_pred cEEEcCCCCHHHHHHHHHHhhc----CCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhh
Q 002299 344 QIYDVKELVDVDALKLFSRCAF----GEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFL 399 (940)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf~~~~~----~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 399 (940)
.+++|+..+.+|+.++..-+.- ....+. ++--+++.-..+|+|--++-++.++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 4688999999999887654331 111111 2334566666789996666666554
No 437
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.19 E-value=0.15 Score=56.71 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=49.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC------CCC-chhh----
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN------VKN-FPYI---- 284 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~-~~~~---- 284 (940)
+.++|.|.+|+|||||+.+++.....+.+.++-+..+.+. ...+.++.+.+...-..... ... ....
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER--~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER--TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4589999999999999999987665443333322233221 22344455555432111100 011 1111
Q ss_pred -hHHHHHhhh---cCCceEEEEeCCCChH
Q 002299 285 -ILNFQSKRF---SCKKVLIVFDDVTHLK 309 (940)
Q Consensus 285 -~~~~l~~~l---~~~~~LlVlDdv~~~~ 309 (940)
..-.+-+++ +++++||++|++....
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 111223333 6799999999995543
No 438
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.18 E-value=0.097 Score=55.34 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=37.5
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
|...+.++=.......+...+..+ +-|.|.|.+|+||||+|+.++.++...|
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 344455665555566666666432 3489999999999999999999886554
No 439
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.15 E-value=0.053 Score=53.26 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=29.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
.+++.|+|+.|+|||||++++......+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 46799999999999999999999888888655554
No 440
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.13 E-value=0.15 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+++|.|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998874
No 441
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.11 E-value=0.041 Score=52.01 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.5
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
-|.++|+.|+||||+.+++++.+.-+|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999999776554
No 442
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.11 E-value=0.32 Score=52.47 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc------cccceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK------HFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~ 251 (940)
...|..+|..+-..-.++-|+|.+|+|||++|..++-.... .-..++|++.
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdt 165 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDT 165 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEEC
Confidence 45566666554455678889999999999999988753321 1125788875
No 443
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.11 E-value=1 Score=53.96 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=35.2
Q ss_pred CCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH
Q 002299 191 NKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 356788887777776655442222233789999999999999999874
No 444
>PRK05439 pantothenate kinase; Provisional
Probab=94.10 E-value=0.071 Score=56.30 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=25.0
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
..+.+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999886643
No 445
>PRK13949 shikimate kinase; Provisional
Probab=94.10 E-value=0.039 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.7
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
-|.|+|++|+||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 446
>PRK13948 shikimate kinase; Provisional
Probab=94.09 E-value=0.044 Score=53.32 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=24.1
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
..+.|.++|+.|+||||+++.+++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3467899999999999999999987643
No 447
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.08 E-value=0.033 Score=51.58 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.6
Q ss_pred EEEEecCCchhhHHHHHHHHHhhcc
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
++|+|+.|+|||||++.+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 7899999999999999999865444
No 448
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.08 E-value=0.21 Score=45.57 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=15.6
Q ss_pred cCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCC
Q 002299 813 LCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGT 851 (940)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n 851 (940)
+..+++|+.+.+.+ .........|..+++|+.+.+..+
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred eecccccccccccc-cccccccccccccccccccccCcc
Confidence 44444555555543 222212234445556666665443
No 449
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.17 Score=51.73 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=25.4
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
.+..++|||++|.|||-+|++++..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 356799999999999999999999775444
No 450
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.04 E-value=0.035 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.03 E-value=0.073 Score=49.36 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=26.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 250 (940)
++|.|+|..|+|||||++.+.+.+.++ +...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 479999999999999999999987644 44444444
No 452
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.03 E-value=0.07 Score=52.45 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=22.5
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
.|+|+|-||+||||+|..++.++..+-
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~ 28 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKG 28 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999777665543
No 453
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.02 E-value=0.039 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.1
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 454
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.01 E-value=0.3 Score=52.62 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc------ccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH------FEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~~ 251 (940)
..+..+|..+-..-.++-|+|.+|+||||++.+++...... -..++|++.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~t 137 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDT 137 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEEC
Confidence 34555565443446788999999999999999998764321 126788874
No 455
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.00 E-value=0.036 Score=30.23 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=6.0
Q ss_pred CCCEEEccCCCCccC
Q 002299 842 ALEELTVEGTAMREV 856 (940)
Q Consensus 842 ~L~~L~L~~n~l~~l 856 (940)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555554443
No 456
>PTZ00035 Rad51 protein; Provisional
Probab=94.00 E-value=0.4 Score=51.88 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc------cccceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK------HFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~ 251 (940)
...|.++|..+-..-.++.|+|.+|+|||||+..++-...- .-..++|++.
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdt 160 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDT 160 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEc
Confidence 34566677655455678999999999999999988754331 1234567764
No 457
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.99 E-value=0.43 Score=56.49 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.++++++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 46999999999999999999987653
No 458
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.98 E-value=0.045 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.6
Q ss_pred EEEEecCCchhhHHHHHHHHHhhc
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
|.|.|.+|+||||+++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999997754
No 459
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.98 E-value=0.16 Score=61.29 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=55.5
Q ss_pred CCceEEEEeCCCC---hHH---H-HHHHcccCCCCCCcEEEEEeCChhhhhhCCCC-c--EEEcCCCCHHHHHHHHHHhh
Q 002299 295 CKKVLIVFDDVTH---LKQ---I-EFLIGRLDWFASGSRIIITTRDKQVLSNCRVD-Q--IYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 295 ~~~~LlVlDdv~~---~~~---~-~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~-~--~~~l~~L~~~ea~~Lf~~~~ 364 (940)
..+-|+++|.... ... + ..+...+. ..|+.+|+||....+....... . ...+. ++. +... +..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 4678999999843 222 2 12222222 3578999999988764322111 1 11111 111 1111 11111
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcCCCHHHHHHHHHHHh
Q 002299 365 FGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSGRRKEEWKSAMRKLE 415 (940)
Q Consensus 365 ~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~~l~ 415 (940)
..+.+.. .-|-+|++.+ |+|-.+..-|..+.+....+++..+.++.
T Consensus 476 -~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 -LKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred -CCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1112221 2355666655 78888887777776554455555555543
No 460
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.32 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
-.+++|.|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999853
No 461
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.96 E-value=0.11 Score=53.36 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
..|.+++..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+..
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34555554443445689999999999999999987654444556777754
No 462
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.96 E-value=0.039 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.9
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+|+|.|..|+||||+|+.++..+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998775
No 463
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.94 E-value=0.1 Score=51.50 Aligned_cols=33 Identities=24% Similarity=0.116 Sum_probs=26.6
Q ss_pred EEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
+.|.|++|+|||++|.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999886654445677775
No 464
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.93 E-value=0.12 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=21.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
-.+++|.|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999986
No 465
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.043 Score=51.28 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=18.6
Q ss_pred EEEEEecCCchhhHHHHHHH
Q 002299 217 KLGIWGIGGIGKTTIAGAIF 236 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~ 236 (940)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48999999999999999987
No 466
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.93 E-value=0.11 Score=53.15 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=32.2
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcccc
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE 244 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 244 (940)
++...+........+|+|.|.||+|||||.-++..++.++-.
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 444445445566789999999999999999999887765533
No 467
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.93 E-value=0.41 Score=44.59 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=32.5
Q ss_pred HHHHHHHHhcceEEEEecCCccchhhhHHHHHHHHHhhccCCCEEEEEEcccC
Q 002299 66 QSLLDAIEASTISVIIFSEGYASSKWCLDELLKIIDCKNNSGQMVIPVFYRVD 118 (940)
Q Consensus 66 ~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El~~~~~~~~~~~~~v~pvf~~v~ 118 (940)
.++.++|+.+++.+.|++.....+.+. .++.+.+.... .+..++-|+-+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 467899999999999998766555442 24555554321 2345566665554
No 468
>PRK14528 adenylate kinase; Provisional
Probab=93.92 E-value=0.25 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 469
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.89 E-value=0.19 Score=53.93 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.9
Q ss_pred EEEEecCCchhhHHHHHHHHHhh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+++.|++|.||||+++.+++.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998765
No 470
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.89 E-value=0.018 Score=33.95 Aligned_cols=15 Identities=33% Similarity=0.694 Sum_probs=7.4
Q ss_pred CCEEEccCCCCccCc
Q 002299 843 LEELTVEGTAMREVP 857 (940)
Q Consensus 843 L~~L~L~~n~l~~lp 857 (940)
|++|+|++|+++.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 445555555544444
No 471
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.89 E-value=1.4 Score=50.77 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=36.6
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
..++|+...+.++.+.+..-......|.|.|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899988888877766543333445889999999999999998774
No 472
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.88 E-value=0.18 Score=56.32 Aligned_cols=92 Identities=23% Similarity=0.287 Sum_probs=49.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC------CCCchhh----
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN------VKNFPYI---- 284 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~~---- 284 (940)
..++|.|.+|+|||||+.++++....+ -+.++|. .+++. ...+.++.+.+...-..... .......
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER--~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGER--SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcc--hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 458999999999999999999866533 3444554 33221 12344444444432111110 0111110
Q ss_pred --hHHHHHhhh---cCCceEEEEeCCCChHH
Q 002299 285 --ILNFQSKRF---SCKKVLIVFDDVTHLKQ 310 (940)
Q Consensus 285 --~~~~l~~~l---~~~~~LlVlDdv~~~~~ 310 (940)
..-.+-+++ +++++|+++|++-...+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~ 251 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQ 251 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHHHH
Confidence 111222333 37899999999955433
No 473
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.87 E-value=0.44 Score=47.58 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=34.9
Q ss_pred hhHHHHHhhhcCCceEEEEeCC----C--ChHHHHHHHcccCCCCCCcEEEEEeCChhhhhhC
Q 002299 284 IILNFQSKRFSCKKVLIVFDDV----T--HLKQIEFLIGRLDWFASGSRIIITTRDKQVLSNC 340 (940)
Q Consensus 284 ~~~~~l~~~l~~~~~LlVlDdv----~--~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~ 340 (940)
+..-.+.+.+...+-+|+-|+= + +...+-.++..+. ...|..||+.|.+..++..+
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC
Confidence 3344566667778889999974 2 2222333333321 13477899999999998754
No 474
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.86 E-value=0.047 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEecCCchhhHHHHHHHHHh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~ 239 (940)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 475
>PHA02244 ATPase-like protein
Probab=93.85 E-value=0.17 Score=54.18 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCCccchhhhHH----HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 191 NKDLVGVECRIK----EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 191 ~~~~vGr~~~~~----~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
...++|....+. .+..++..+. -|.|+|++|+|||++|+++++.....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~----PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANI----PVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCC----CEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 445677555443 4444544322 37789999999999999999876433
No 476
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.85 E-value=0.21 Score=54.89 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=29.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh--hccccceEEEec
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM--SKHFEGSYFAHN 251 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~--~~~f~~~~~~~~ 251 (940)
.++.|.|.+|.|||.||..++.++ ........++..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~ 39 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCG 39 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEe
Confidence 478999999999999999999988 566666666653
No 477
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.84 E-value=0.061 Score=51.46 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
...+++|+|..|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45689999999999999999999877653
No 478
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.84 E-value=0.099 Score=49.89 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=58.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
.+++|.|..|.|||||++.++..+. ...+.+++....- . ..........+. -+.. -...+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~-~-~~~~~~~~~~i~-~~~q----lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDI-A-KLPLEELRRRIG-YVPQ----LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEc-c-cCCHHHHHhceE-EEee----CCHHHHHHHHHHHHHhc
Confidence 5799999999999999999987543 3445555543210 0 000111111000 0000 11111222233444455
Q ss_pred CceEEEEeCCCC---hHH---HHHHHcccCCCCCCcEEEEEeCChhhhhh
Q 002299 296 KKVLIVFDDVTH---LKQ---IEFLIGRLDWFASGSRIIITTRDKQVLSN 339 (940)
Q Consensus 296 ~~~LlVlDdv~~---~~~---~~~l~~~l~~~~~gs~iiiTtR~~~~~~~ 339 (940)
.+=++++|+... ... +..+...+. ..+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 677999999742 222 222222222 225678888888766554
No 479
>PLN02674 adenylate kinase
Probab=93.82 E-value=0.43 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=21.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..|.|.|++|+||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999998865
No 480
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.81 E-value=0.3 Score=48.79 Aligned_cols=20 Identities=45% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEecCCchhhHHHHHHH
Q 002299 217 KLGIWGIGGIGKTTIAGAIF 236 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~ 236 (940)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999985
No 481
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.78 E-value=0.09 Score=57.13 Aligned_cols=52 Identities=31% Similarity=0.293 Sum_probs=39.3
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceE
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSY 247 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~ 247 (940)
..++|++..+..+...+..+. -+.+.|.+|+|||+||+.++..+...|-.+.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~l~~~~~~i~ 75 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARALGLPFVRIQ 75 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 348888888777766555432 3889999999999999999998875554333
No 482
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=93.78 E-value=0.2 Score=54.58 Aligned_cols=178 Identities=16% Similarity=0.273 Sum_probs=84.4
Q ss_pred hHHHHHHHHhCCCcEE---ec------CCCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHHHHHHHHHhhc-cCC
Q 002299 38 TSHLFSALSKKHIETF---ID------DQLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLDELLKIIDCKN-NSG 107 (940)
Q Consensus 38 ~~~l~~~L~~~g~~~f---~d------~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El~~~~~~~~-~~~ 107 (940)
.+.|.+-.+.+|+.|. .. ....-|..=..++.+.+++..+-+|||-..-.-+. ...|.+++.++. .+.
T Consensus 19 ~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q--~~nl~~~~~~~v~Dr~ 96 (351)
T TIGR03156 19 LEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELSPSQ--ERNLEKALGCRVIDRT 96 (351)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCCHHH--HHHHHHHhCCcccchH
Confidence 5556666677798873 22 13344566667888888888888888875443333 244666654431 122
Q ss_pred CEEEEEEcccCCcchhhcccchhHHHHHHhhcchhHHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhhhhccCccc
Q 002299 108 QMVIPVFYRVDPSHVRKQIGSFGDSISNLEERFPEKMQRWRNALTEAANLSGFDSHVTRPESKLIEEIVGEVLKRLDDTF 187 (940)
Q Consensus 108 ~~v~pvf~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 187 (940)
..++-||.. +.+..-+...-+++.......+.+..|+. +.......|+..+ .|.. ++.-...+..++.
T Consensus 97 ~lil~iF~~----ra~t~e~klqv~la~l~~~l~r~~~~~~~-l~~~~~~i~~~g~---gE~~-~~~~~~~i~~ri~--- 164 (351)
T TIGR03156 97 GLILDIFAQ----RARTHEGKLQVELAQLKYLLPRLVGGWTH-LSRQGGGIGTRGP---GETQ-LETDRRLIRERIA--- 164 (351)
T ss_pred HHHHHHHHH----hccChHHHHHHHHHhccchhhhhhhhHHH-HHhhcCCCCCCCC---ChhH-HHHHHHHHHHHHH---
Confidence 223333311 11111122222333333333455666766 5433322222211 1111 0000011111110
Q ss_pred CCCCCCccchhhhHHHHHHHhhc-----CCCCeeEEEEEecCCchhhHHHHHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRT-----GSAGVCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~-----~~~~~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
-...+++++.+--.. ...+...|+|+|.+++|||||..++..
T Consensus 165 --------~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~ 211 (351)
T TIGR03156 165 --------QLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTG 211 (351)
T ss_pred --------HHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhC
Confidence 111222222211110 113446799999999999999999886
No 483
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.77 E-value=0.48 Score=46.96 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEecCCchhhHHHHHHHHHh
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~ 239 (940)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999864
No 484
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.75 E-value=1.3 Score=47.99 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.+.+|.++|.-|.||||.|-.+++.++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 4678999999999999999999988776
No 485
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.75 E-value=0.095 Score=52.36 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=48.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC-------CCCchh-----
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN-------VKNFPY----- 283 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~~~----- 283 (940)
..++|.|.+|+|||+|+.++++.... +.++++.+-.. ...+.++.+++...-..... ......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~iGer---~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYALIGER---GREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEEESEC---HHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeeecccc---chhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 35889999999999999999987643 23355443211 12344444444332111110 111101
Q ss_pred ----hhHHHHHhhhcCCceEEEEeCCCChH
Q 002299 284 ----IILNFQSKRFSCKKVLIVFDDVTHLK 309 (940)
Q Consensus 284 ----~~~~~l~~~l~~~~~LlVlDdv~~~~ 309 (940)
...+.+++ +++++|+++||+....
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSLTRWA 118 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETHHHHH
T ss_pred ccchhhhHHHhh--cCCceeehhhhhHHHH
Confidence 12233333 6899999999985433
No 486
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.74 E-value=0.074 Score=54.34 Aligned_cols=49 Identities=27% Similarity=0.182 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEec
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHN 251 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~ 251 (940)
.|.++|..+-..-.++.|.|.+|+|||++|.+++.....+ -+.++|+..
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 3445554433445689999999999999999988765555 556777753
No 487
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.73 E-value=0.09 Score=50.29 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=30.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
...|++-|+.|+|||+|..+.++.++++|...+-.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~ 47 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT 47 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe
Confidence 47899999999999999999999998888766543
No 488
>PRK13946 shikimate kinase; Provisional
Probab=93.72 E-value=0.051 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+.|.+.|++|+||||+|+.+++++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999999873
No 489
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.72 E-value=0.29 Score=44.73 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=47.1
Q ss_pred ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCc
Q 002299 733 IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSS 812 (940)
Q Consensus 733 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 812 (940)
|..+++|+.+.+.. .....-...|.++++|+.+.+.++ +..++.. .+... ++|+.+.+.+ .....-...
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~--~F~~~-----~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDN--AFSNC-----KSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TT--TTTT------TT-EEEEETS-TT-EE-TTT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--cccccee--eeecc-----cccccccccc-ccccccccc
Confidence 45566677777664 333333344666667777777652 3222221 11111 4677777754 232333345
Q ss_pred cCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccC
Q 002299 813 LCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEG 850 (940)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 850 (940)
+..+++|+.+.+..+ +...-...+.+. +|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 666788888888654 332223445565 777777765
No 490
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=1.8 Score=49.78 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=79.6
Q ss_pred CccchhhhHHHHHHHhhcCC--------C---CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCH
Q 002299 193 DLVGVECRIKEIELLLRTGS--------A---GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGL 261 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~~--------~---~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 261 (940)
++=|..+..+.+.+.+.-.. . -..-|.++|++|.|||-||-+++....-+ |+.+-+ .
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fisvKG-------P 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FISVKG-------P 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEEecC-------H
Confidence 34455555555655554321 1 12238899999999999999998754322 343321 1
Q ss_pred HHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH-------------HHHHHHcccCCC--CCCcE
Q 002299 262 AHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-------------QIEFLIGRLDWF--ASGSR 326 (940)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~--~~gs~ 326 (940)
+++....+.. .+...+...+.-..+++.+.+|.++... .+.+++..+... -.|.-
T Consensus 736 -----ElL~KyIGaS-----Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~ 805 (952)
T KOG0735|consen 736 -----ELLSKYIGAS-----EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVY 805 (952)
T ss_pred -----HHHHHHhccc-----HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEE
Confidence 1222222221 1222333333345599999999986531 256666665422 23444
Q ss_pred EE-EEeCChhhhhh----CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 327 II-ITTRDKQVLSN----CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 327 ii-iTtR~~~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
|+ .|||..-+-.. -+.++.+.-+.-++.|.++.+....
T Consensus 806 i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred EEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 54 35664433222 1233444445556667777776554
No 491
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.71 E-value=0.043 Score=54.80 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+|+|.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 492
>PRK15115 response regulator GlrR; Provisional
Probab=93.71 E-value=0.95 Score=51.71 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=32.6
Q ss_pred CccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH
Q 002299 193 DLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.++|....+.++.+....-......|.|.|.+|+|||++|+.+.+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 5788777766665544332223345779999999999999988774
No 493
>PRK08506 replicative DNA helicase; Provisional
Probab=93.69 E-value=0.5 Score=53.87 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=47.3
Q ss_pred ccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhh
Q 002299 194 LVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLL 273 (940)
Q Consensus 194 ~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 273 (940)
..|...-...|.+++ .+-..-.++.|-|.+|+|||++|..++.....+-..++|+. -+....++..+++....
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LEMPAEQLMLRMLSAKT 244 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------CcCCHHHHHHHHHHHhc
Confidence 455555566666654 23334457889999999999999999886643323455553 34556667766666543
No 494
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.74 Score=52.74 Aligned_cols=174 Identities=16% Similarity=0.152 Sum_probs=89.7
Q ss_pred CCCccchhhhHHHHH---HHhhcCC-------CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 191 NKDLVGVECRIKEIE---LLLRTGS-------AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~---~~l~~~~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
..+.-|.+...+++. +.|.... .-++-|.++|++|.|||.||++++-...-.|-.. . .++
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i---S-GS~------ 218 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI---S-GSD------ 218 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceec---c-chh------
Confidence 456778776665554 4454321 1245589999999999999999998654333111 0 000
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh----------------HHHHHHHcccCCCCCC
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL----------------KQIEFLIGRLDWFASG 324 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~g 324 (940)
+.++ ..+ -......+...+..+.-++.+++|.++.. ..+.+++.....++.+
T Consensus 219 FVem-------fVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 219 FVEM-------FVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhhh-------hcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 0000 000 00011223333344456788898887432 1255666666655533
Q ss_pred cE-EEE-EeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCC-CchhhHHHHHHHHHhcCChh
Q 002299 325 SR-III-TTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCAFGEDDP-TASYTKLTHEAVKYAKGVPL 390 (940)
Q Consensus 325 s~-iii-TtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~PL 390 (940)
.- |++ .|-..+|.. .-+.+..+.|+.-+-..-.+.++-|+-..... .-+ ...|++.+-|.-.
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd----l~~iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD----LKKIARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC----HHHHhhhCCCccc
Confidence 22 333 232233322 22345667777777777777777666433222 111 2236666666543
No 495
>PRK15453 phosphoribulokinase; Provisional
Probab=93.64 E-value=0.098 Score=53.82 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
...+|+|.|.+|+||||+|+++++.++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999986643
No 496
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.62 E-value=0.06 Score=53.16 Aligned_cols=25 Identities=40% Similarity=0.424 Sum_probs=22.5
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999874
No 497
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.58 E-value=0.077 Score=56.12 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=23.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
+.|+|+|-||+||||+|..++.-+..+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 468999999999999999998866554
No 498
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.57 E-value=0.41 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=21.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
++++|.|+.|.|||||.+.++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 78999999999999999998863
No 499
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.55 E-value=0.026 Score=33.25 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=11.0
Q ss_pred ccEEecCCCCCcccCcccc
Q 002299 716 LKDLDLESCGIEELPSSIE 734 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~ 734 (940)
|++|+|++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666666665543
No 500
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.55 E-value=0.092 Score=58.19 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=34.3
Q ss_pred CccchhhhHHHHHHHhh-------cC-----C--CCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 193 DLVGVECRIKEIELLLR-------TG-----S--AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~-------~~-----~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
.+||.+..++.+...+. .. + -....+.++|++|+|||++|+.++......|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 46787777776643331 00 0 0124588999999999999999998764433
Done!