Query 002299
Match_columns 940
No_of_seqs 839 out of 5352
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 20:43:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 3.4E-46 1.2E-50 354.6 12.6 170 16-185 30-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.5E-45 5E-50 345.7 12.3 171 16-188 3-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-40 5.3E-45 386.1 23.1 299 195-505 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 6.5E-35 2.2E-39 377.7 24.1 306 186-504 118-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 8.3E-35 2.8E-39 338.6 16.4 278 192-497 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 7.1E-33 2.4E-37 327.5 23.3 301 186-500 118-448 (591)
7 3rgz_A Protein brassinosteroid 100.0 6.4E-31 2.2E-35 319.7 19.8 358 540-911 300-739 (768)
8 3rgz_A Protein brassinosteroid 100.0 1.2E-30 4E-35 317.4 21.4 342 550-911 285-716 (768)
9 3t6q_A CD180 antigen; protein- 100.0 3.3E-29 1.1E-33 298.0 29.7 363 538-911 37-488 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 1.1E-29 3.7E-34 305.8 25.1 320 583-910 448-838 (876)
11 4eco_A Uncharacterized protein 100.0 4.4E-30 1.5E-34 305.0 21.1 320 577-911 198-599 (636)
12 3t6q_A CD180 antigen; protein- 100.0 6.9E-29 2.4E-33 295.2 28.3 276 623-915 255-563 (606)
13 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-29 1.3E-33 297.4 26.0 229 668-915 306-561 (606)
14 2id5_A Lingo-1, leucine rich r 100.0 1.3E-28 4.6E-33 283.4 27.4 312 573-917 22-338 (477)
15 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-29 1.9E-33 295.9 24.2 226 645-892 307-562 (606)
16 3v47_A TOLL-like receptor 5B a 100.0 9.5E-29 3.3E-33 283.1 24.0 334 547-915 42-411 (455)
17 4eco_A Uncharacterized protein 100.0 2.9E-29 9.8E-34 297.9 20.2 327 552-890 199-602 (636)
18 2z63_A TOLL-like receptor 4, v 100.0 2.3E-28 7.8E-33 288.8 24.1 183 715-915 348-534 (570)
19 4ecn_A Leucine-rich repeat pro 100.0 4.8E-28 1.7E-32 291.4 25.7 327 555-910 487-862 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 4.4E-28 1.5E-32 282.5 22.6 161 735-915 322-484 (520)
21 3h16_A TIR protein; bacteria T 100.0 7.5E-30 2.6E-34 240.8 5.3 120 16-136 15-135 (154)
22 4fmz_A Internalin; leucine ric 100.0 2.2E-27 7.6E-32 261.1 25.5 306 554-911 39-345 (347)
23 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-28 1.7E-32 284.3 21.2 352 539-915 31-513 (549)
24 3v47_A TOLL-like receptor 5B a 100.0 2.5E-27 8.5E-32 271.3 25.7 311 548-892 68-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.3E-27 1.1E-31 277.4 24.2 162 734-915 350-513 (562)
26 1ziw_A TOLL-like receptor 3; i 100.0 8.7E-27 3E-31 281.0 28.0 360 549-911 39-516 (680)
27 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-26 5E-31 284.4 30.2 357 539-911 29-463 (844)
28 1ziw_A TOLL-like receptor 3; i 99.9 3.9E-26 1.3E-30 275.3 31.9 189 715-911 382-596 (680)
29 3o6n_A APL1; leucine-rich repe 99.9 1.4E-26 4.7E-31 259.0 24.5 311 557-919 43-359 (390)
30 4g8a_A TOLL-like receptor 4; l 99.9 2.2E-26 7.5E-31 275.7 27.8 356 538-915 56-583 (635)
31 3oja_B Anopheles plasmodium-re 99.9 2E-26 6.9E-31 272.0 24.2 309 558-917 50-363 (597)
32 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-26 6.1E-31 283.6 24.4 257 539-806 53-375 (844)
33 1o6v_A Internalin A; bacterial 99.9 7.3E-26 2.5E-30 259.2 27.0 320 554-913 63-389 (466)
34 2id5_A Lingo-1, leucine rich r 99.9 1.1E-25 3.6E-30 259.2 26.3 293 559-889 32-334 (477)
35 2z63_A TOLL-like receptor 4, v 99.9 3.6E-26 1.2E-30 269.8 20.6 357 539-911 33-506 (570)
36 2z81_A CD282 antigen, TOLL-lik 99.9 1.8E-26 6.1E-31 271.0 17.6 340 559-911 26-485 (549)
37 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-25 4.3E-30 261.7 24.2 178 693-890 303-483 (520)
38 4fmz_A Internalin; leucine ric 99.9 4.8E-25 1.6E-29 242.5 26.8 285 554-888 61-346 (347)
39 1o6v_A Internalin A; bacterial 99.9 3.8E-25 1.3E-29 253.3 25.6 315 556-911 43-365 (466)
40 3o6n_A APL1; leucine-rich repe 99.9 5.2E-25 1.8E-29 246.2 25.8 293 547-889 57-353 (390)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.3E-25 1.8E-29 258.5 27.0 328 539-892 57-514 (562)
42 3bz5_A Internalin-J, INLJ; leu 99.9 9.6E-25 3.3E-29 247.5 25.8 285 554-889 59-353 (457)
43 3oja_B Anopheles plasmodium-re 99.9 7.3E-25 2.5E-29 258.7 25.8 293 547-889 63-359 (597)
44 1jl5_A Outer protein YOPM; leu 99.9 7.3E-24 2.5E-28 240.1 29.1 294 559-912 91-409 (454)
45 3bz5_A Internalin-J, INLJ; leu 99.9 6.8E-24 2.3E-28 240.5 28.9 307 554-912 37-352 (457)
46 1xku_A Decorin; proteoglycan, 99.9 6.8E-24 2.3E-28 231.3 26.4 291 560-909 32-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 4E-24 1.4E-28 233.2 23.8 288 560-909 34-330 (332)
48 2ft3_A Biglycan; proteoglycan, 99.9 3E-24 1E-28 234.2 22.8 245 622-913 54-308 (332)
49 1xku_A Decorin; proteoglycan, 99.9 1E-23 3.4E-28 229.9 26.6 266 559-886 52-330 (330)
50 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-24 5E-29 233.9 14.1 249 622-913 50-305 (313)
51 4fcg_A Uncharacterized protein 99.9 3.1E-23 1.1E-27 224.8 20.7 221 622-853 81-313 (328)
52 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-24 7.9E-29 232.4 10.0 252 584-892 51-308 (313)
53 4g8a_A TOLL-like receptor 4; l 99.9 6.1E-23 2.1E-27 245.8 22.9 333 559-911 52-554 (635)
54 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-22 1.5E-26 232.0 27.1 270 559-900 40-309 (622)
55 1jl5_A Outer protein YOPM; leu 99.9 6.8E-22 2.3E-26 223.9 27.5 304 558-912 110-429 (454)
56 4fcg_A Uncharacterized protein 99.9 2.7E-22 9.1E-27 217.5 19.2 205 615-830 97-314 (328)
57 2z66_A Variable lymphocyte rec 99.9 4.1E-22 1.4E-26 214.6 19.7 181 716-914 80-263 (306)
58 3zyi_A Leucine-rich repeat-con 99.9 1.2E-21 4E-26 223.3 24.0 225 645-914 75-305 (452)
59 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-21 1.3E-25 224.2 28.6 258 583-912 40-297 (622)
60 3zyj_A Leucine-rich repeat-con 99.9 1.6E-21 5.6E-26 221.3 23.8 225 645-914 64-294 (440)
61 2z80_A TOLL-like receptor 2, v 99.9 3.1E-22 1.1E-26 220.2 17.0 255 623-915 53-317 (353)
62 2z80_A TOLL-like receptor 2, v 99.9 5.9E-22 2E-26 218.0 18.2 277 559-892 31-318 (353)
63 3ub2_A TOLL/interleukin-1 rece 99.9 6.3E-24 2.1E-28 196.3 1.9 103 18-122 7-112 (146)
64 3zyj_A Leucine-rich repeat-con 99.9 1E-20 3.4E-25 214.8 25.5 245 561-854 45-292 (440)
65 2z66_A Variable lymphocyte rec 99.9 2.1E-21 7.2E-26 209.1 17.3 140 733-889 122-262 (306)
66 1z7x_W Ribonuclease inhibitor; 99.9 9.7E-25 3.3E-29 250.3 -9.8 333 554-912 23-411 (461)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-22 4.6E-27 219.2 7.5 240 618-909 30-272 (317)
68 3zyi_A Leucine-rich repeat-con 99.9 1.7E-20 6E-25 213.6 24.4 243 561-854 56-303 (452)
69 3oja_A Leucine-rich immune mol 99.9 1.3E-21 4.6E-26 223.8 13.6 236 620-907 32-270 (487)
70 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-20 6.5E-25 199.3 20.7 203 622-854 32-238 (285)
71 1z7x_W Ribonuclease inhibitor; 99.8 3.8E-23 1.3E-27 237.0 -6.1 338 552-909 49-440 (461)
72 1wwl_A Monocyte differentiatio 99.8 4.8E-22 1.6E-26 214.4 2.3 249 617-912 38-309 (312)
73 1wwl_A Monocyte differentiatio 99.8 1.9E-21 6.4E-26 209.7 6.1 235 615-889 58-310 (312)
74 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-19 4.5E-24 192.8 20.2 242 648-911 14-260 (285)
75 2o6q_A Variable lymphocyte rec 99.8 4.5E-19 1.5E-23 186.7 23.9 203 694-915 18-221 (270)
76 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-20 5.3E-25 203.0 11.1 252 622-925 10-263 (317)
77 2js7_A Myeloid differentiation 99.8 5.3E-21 1.8E-25 180.0 3.5 100 18-119 13-117 (160)
78 1fyx_A TOLL-like receptor 2; b 99.8 3.6E-21 1.2E-25 179.5 2.1 98 18-117 2-104 (149)
79 1p9a_G Platelet glycoprotein I 99.8 1.3E-18 4.5E-23 184.7 22.1 186 708-915 25-211 (290)
80 2j67_A TOLL like receptor 10; 99.8 8.9E-21 3.1E-25 181.2 4.6 101 17-119 31-136 (178)
81 3oja_A Leucine-rich immune mol 99.8 1.6E-19 5.4E-24 206.6 15.6 229 643-923 32-261 (487)
82 1t3g_A X-linked interleukin-1 99.8 6.4E-20 2.2E-24 172.4 6.6 101 20-120 1-115 (159)
83 2z62_A TOLL-like receptor 4, v 99.8 3.1E-18 1.1E-22 181.2 17.5 181 716-915 54-240 (276)
84 3ogk_B Coronatine-insensitive 99.8 5.1E-21 1.7E-25 226.8 -5.0 193 715-913 294-527 (592)
85 1p9a_G Platelet glycoprotein I 99.8 1.5E-17 5.3E-22 176.4 22.2 204 618-855 6-209 (290)
86 3rfs_A Internalin B, repeat mo 99.8 3.2E-18 1.1E-22 180.4 14.6 231 620-901 17-248 (272)
87 3m19_A Variable lymphocyte rec 99.8 1.4E-17 4.7E-22 173.3 19.1 179 716-914 16-194 (251)
88 2o6q_A Variable lymphocyte rec 99.8 6.8E-17 2.3E-21 170.0 23.6 201 646-889 17-219 (270)
89 2z62_A TOLL-like receptor 4, v 99.8 2.4E-17 8.2E-22 174.3 19.9 115 733-856 120-239 (276)
90 3rfs_A Internalin B, repeat mo 99.7 5.7E-17 1.9E-21 170.8 19.9 194 690-910 39-233 (272)
91 2ca6_A RAN GTPase-activating p 99.7 6.2E-20 2.1E-24 204.6 -4.0 260 613-909 23-340 (386)
92 4ay9_X Follicle-stimulating ho 99.7 5E-17 1.7E-21 178.1 18.6 240 625-909 12-256 (350)
93 3ogk_B Coronatine-insensitive 99.7 7.5E-20 2.6E-24 216.7 -5.0 336 555-908 160-547 (592)
94 2ca6_A RAN GTPase-activating p 99.7 1.3E-19 4.3E-24 202.1 -3.6 241 640-913 27-317 (386)
95 2ast_B S-phase kinase-associat 99.7 1.2E-18 3.9E-23 190.5 3.7 239 618-897 64-315 (336)
96 4glp_A Monocyte differentiatio 99.7 3.4E-17 1.2E-21 176.2 14.2 157 734-912 142-307 (310)
97 4ay9_X Follicle-stimulating ho 99.7 1.2E-16 4.2E-21 174.9 18.7 233 562-826 12-255 (350)
98 1h6u_A Internalin H; cell adhe 99.7 1E-16 3.5E-21 172.0 15.9 197 618-857 37-233 (308)
99 2qen_A Walker-type ATPase; unk 99.7 7.1E-16 2.4E-20 169.4 22.5 292 185-498 5-349 (350)
100 1h6u_A Internalin H; cell adhe 99.7 2.6E-16 8.9E-21 168.8 18.3 191 583-831 41-231 (308)
101 3m19_A Variable lymphocyte rec 99.7 6.3E-16 2.2E-20 160.7 20.5 178 694-890 16-194 (251)
102 2xwt_C Thyrotropin receptor; s 99.7 2E-16 6.7E-21 163.3 15.7 170 716-909 57-236 (239)
103 4glp_A Monocyte differentiatio 99.7 2.1E-16 7.3E-21 170.0 16.1 201 620-854 89-307 (310)
104 2xwt_C Thyrotropin receptor; s 99.7 6.4E-16 2.2E-20 159.4 17.6 197 646-886 32-237 (239)
105 2ast_B S-phase kinase-associat 99.7 1E-17 3.4E-22 183.0 3.5 246 623-912 48-306 (336)
106 3goz_A Leucine-rich repeat-con 99.7 1.9E-18 6.6E-23 190.4 -2.3 256 614-892 14-301 (362)
107 3goz_A Leucine-rich repeat-con 99.7 6.4E-18 2.2E-22 186.2 1.9 242 583-855 22-298 (362)
108 2p1m_B Transport inhibitor res 99.7 5.3E-18 1.8E-22 200.9 -0.8 88 814-911 429-518 (594)
109 2fna_A Conserved hypothetical 99.7 1.2E-15 4E-20 168.1 17.8 291 186-497 7-356 (357)
110 3cvr_A Invasion plasmid antige 99.6 1.6E-15 5.4E-20 174.5 18.0 112 646-772 60-171 (571)
111 2xot_A Amphoterin-induced prot 99.6 1.1E-15 3.9E-20 167.9 14.4 183 716-915 20-205 (361)
112 2v9t_B SLIT homolog 2 protein 99.6 5.4E-15 1.8E-19 149.9 17.1 152 716-887 13-164 (220)
113 3cvr_A Invasion plasmid antige 99.6 8.1E-15 2.8E-19 168.6 19.1 189 670-900 60-255 (571)
114 2o6s_A Variable lymphocyte rec 99.6 7.8E-15 2.7E-19 147.6 16.2 168 708-900 22-190 (208)
115 1m9s_A Internalin B; cell inva 99.6 3.3E-15 1.1E-19 174.0 12.7 192 644-889 20-211 (605)
116 2p1m_B Transport inhibitor res 99.6 9.7E-18 3.3E-22 198.7 -8.9 343 554-909 151-541 (594)
117 2v70_A SLIT-2, SLIT homolog 2 99.6 1.4E-14 4.7E-19 146.8 15.2 153 716-888 13-166 (220)
118 2o6s_A Variable lymphocyte rec 99.6 2.7E-14 9.3E-19 143.6 17.2 170 716-912 9-178 (208)
119 3e6j_A Variable lymphocyte rec 99.6 2.1E-14 7.2E-19 146.5 16.2 153 715-888 20-172 (229)
120 1h6t_A Internalin B; cell adhe 99.6 1.3E-14 4.6E-19 153.9 14.5 173 665-889 42-214 (291)
121 1w5s_A Origin recognition comp 99.6 9E-14 3.1E-18 156.3 21.7 281 190-483 20-371 (412)
122 1h6t_A Internalin B; cell adhe 99.6 1.8E-14 6.3E-19 152.8 15.1 166 715-911 47-212 (291)
123 4ezg_A Putative uncharacterize 99.6 1.7E-14 5.8E-19 143.6 13.1 105 793-911 88-193 (197)
124 4ezg_A Putative uncharacterize 99.5 9.1E-15 3.1E-19 145.6 9.7 150 715-888 45-194 (197)
125 2xot_A Amphoterin-induced prot 99.5 4.9E-14 1.7E-18 154.8 14.7 174 696-888 22-202 (361)
126 2v70_A SLIT-2, SLIT homolog 2 99.5 9.3E-14 3.2E-18 140.7 15.4 151 696-855 15-167 (220)
127 2v9t_B SLIT homolog 2 protein 99.5 1.4E-13 4.8E-18 139.4 16.6 151 696-855 15-166 (220)
128 1dce_A Protein (RAB geranylger 99.5 6E-17 2E-21 187.6 -9.7 81 793-882 486-567 (567)
129 2qby_B CDC6 homolog 3, cell di 99.5 3.8E-12 1.3E-16 141.4 28.8 274 192-483 20-339 (384)
130 1m9s_A Internalin B; cell inva 99.5 9.4E-14 3.2E-18 161.8 16.3 146 618-771 39-185 (605)
131 1xeu_A Internalin C; cellular 99.5 6.9E-14 2.4E-18 145.9 9.8 169 691-890 18-187 (263)
132 3e6j_A Variable lymphocyte rec 99.5 9.9E-13 3.4E-17 134.1 17.9 153 695-857 22-175 (229)
133 1xeu_A Internalin C; cellular 99.4 3.1E-13 1.1E-17 141.0 10.9 149 617-805 36-184 (263)
134 1dce_A Protein (RAB geranylger 99.4 4.7E-16 1.6E-20 180.1 -12.4 181 715-911 350-545 (567)
135 1w8a_A SLIT protein; signaling 99.4 1.3E-12 4.6E-17 129.0 14.1 110 794-913 30-140 (192)
136 2qby_A CDC6 homolog 1, cell di 99.4 1.7E-11 5.8E-16 136.3 23.3 283 190-483 18-348 (386)
137 2wfh_A SLIT homolog 2 protein 99.4 2.8E-12 9.5E-17 126.7 14.4 111 793-914 31-141 (193)
138 2v1u_A Cell division control p 99.4 4.7E-11 1.6E-15 132.8 26.0 279 191-483 18-351 (387)
139 2ell_A Acidic leucine-rich nuc 99.4 1.7E-12 5.8E-17 125.4 11.5 133 715-888 25-160 (168)
140 4b8c_D Glucose-repressible alc 99.4 7.9E-13 2.7E-17 158.2 10.9 184 716-911 203-403 (727)
141 2ell_A Acidic leucine-rich nuc 99.3 1.9E-12 6.4E-17 125.1 9.4 108 793-911 49-159 (168)
142 1w8a_A SLIT protein; signaling 99.3 6.6E-12 2.3E-16 124.0 13.2 129 716-854 10-139 (192)
143 4b8c_D Glucose-repressible alc 99.3 9.3E-13 3.2E-17 157.5 6.9 174 716-912 175-354 (727)
144 1fnn_A CDC6P, cell division co 99.3 2.1E-10 7E-15 127.6 25.3 303 191-504 16-387 (389)
145 3sb4_A Hypothetical leucine ri 99.3 2.6E-12 9E-17 139.1 9.1 268 620-906 23-328 (329)
146 2je0_A Acidic leucine-rich nuc 99.3 1.6E-12 5.4E-17 122.8 5.5 129 736-907 16-148 (149)
147 2o6r_A Variable lymphocyte rec 99.3 3.4E-11 1.2E-15 117.3 15.2 130 716-889 9-138 (177)
148 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 9E-16 118.1 14.0 112 793-914 28-139 (177)
149 2wfh_A SLIT homolog 2 protein 99.3 3.1E-11 1E-15 119.2 13.8 127 717-854 13-139 (193)
150 3sb4_A Hypothetical leucine ri 99.3 3.1E-11 1.1E-15 130.7 14.1 261 558-882 48-328 (329)
151 1njg_A DNA polymerase III subu 99.2 1.8E-10 6.3E-15 118.9 18.3 199 189-399 20-231 (250)
152 2je0_A Acidic leucine-rich nuc 99.2 7.3E-12 2.5E-16 118.2 6.9 128 715-883 18-148 (149)
153 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 3.9E-16 120.5 7.0 107 793-911 42-152 (176)
154 3g39_A Variable lymphocyte rec 99.2 1.9E-10 6.4E-15 110.9 12.5 105 796-913 12-116 (170)
155 2r9u_A Variable lymphocyte rec 99.1 2.3E-10 7.9E-15 110.6 12.8 105 796-913 15-119 (174)
156 2chg_A Replication factor C sm 99.1 8.6E-10 2.9E-14 112.0 16.6 184 189-395 14-203 (226)
157 1a9n_A U2A', U2A'; complex (nu 99.1 1E-10 3.4E-15 113.8 9.0 88 793-888 64-153 (176)
158 4fdw_A Leucine rich hypothetic 99.1 3.4E-09 1.2E-13 117.0 22.2 170 715-909 204-380 (401)
159 4fdw_A Leucine rich hypothetic 99.0 7.1E-09 2.4E-13 114.5 20.6 238 620-911 111-357 (401)
160 4fs7_A Uncharacterized protein 99.0 1.4E-08 4.7E-13 112.7 22.0 43 547-593 59-104 (394)
161 1ds9_A Outer arm dynein; leuci 99.0 1.3E-12 4.5E-17 130.0 -10.2 55 716-772 25-81 (198)
162 3g39_A Variable lymphocyte rec 99.0 2.2E-09 7.5E-14 103.4 12.8 110 715-858 10-119 (170)
163 2r9u_A Variable lymphocyte rec 99.0 3.3E-09 1.1E-13 102.5 13.5 112 716-861 14-125 (174)
164 1sxj_B Activator 1 37 kDa subu 99.0 5.2E-09 1.8E-13 112.9 15.3 184 189-395 18-209 (323)
165 1ds9_A Outer arm dynein; leuci 98.9 7.9E-12 2.7E-16 124.3 -7.5 148 736-905 17-180 (198)
166 3un9_A NLR family member X1; l 98.9 4.1E-11 1.4E-15 131.1 -5.9 167 715-890 73-254 (372)
167 1iqp_A RFCS; clamp loader, ext 98.9 1.8E-08 6.2E-13 108.8 14.3 186 188-396 21-212 (327)
168 2ifg_A High affinity nerve gro 98.9 5.8E-09 2E-13 113.8 10.4 65 793-857 31-96 (347)
169 4fs7_A Uncharacterized protein 98.8 1.9E-07 6.5E-12 103.5 22.4 304 547-904 82-393 (394)
170 3un9_A NLR family member X1; l 98.8 1.2E-10 4.2E-15 127.3 -5.3 161 691-856 71-254 (372)
171 1hqc_A RUVB; extended AAA-ATPa 98.8 2.8E-07 9.7E-12 99.2 20.4 259 189-493 9-308 (324)
172 4gt6_A Cell surface protein; l 98.7 9.3E-07 3.2E-11 97.9 23.2 101 793-909 288-388 (394)
173 2chq_A Replication factor C sm 98.7 1.7E-07 5.8E-12 100.7 14.7 184 188-395 13-203 (319)
174 1jr3_A DNA polymerase III subu 98.7 1.8E-07 6.1E-12 103.0 14.7 195 190-396 14-221 (373)
175 4gt6_A Cell surface protein; l 98.6 4E-06 1.4E-10 92.8 24.3 104 793-910 265-368 (394)
176 3te6_A Regulatory protein SIR3 98.6 5.7E-07 2E-11 94.2 15.8 165 193-364 21-211 (318)
177 1jbk_A CLPB protein; beta barr 98.6 2.2E-07 7.5E-12 91.5 11.3 50 190-241 20-69 (195)
178 1sxj_A Activator 1 95 kDa subu 98.6 1.5E-06 5E-11 99.5 19.6 190 189-395 36-252 (516)
179 2ra8_A Uncharacterized protein 98.6 2E-08 6.8E-13 108.7 3.6 162 731-910 166-341 (362)
180 2ra8_A Uncharacterized protein 98.6 2.8E-08 9.6E-13 107.5 4.5 165 729-912 131-320 (362)
181 3pfi_A Holliday junction ATP-d 98.5 2.4E-06 8.2E-11 92.4 19.3 251 189-483 26-313 (338)
182 3h4m_A Proteasome-activating n 98.5 3.7E-07 1.2E-11 96.2 12.4 181 189-394 14-229 (285)
183 3bos_A Putative DNA replicatio 98.5 1.9E-07 6.4E-12 95.8 9.3 174 190-396 26-217 (242)
184 2ifg_A High affinity nerve gro 98.5 3.9E-07 1.3E-11 99.2 11.3 53 718-771 12-66 (347)
185 3d8b_A Fidgetin-like protein 1 98.4 4.7E-06 1.6E-10 90.4 18.0 203 168-397 63-296 (357)
186 2z4s_A Chromosomal replication 98.4 1.3E-06 4.5E-11 97.4 12.8 181 192-394 105-304 (440)
187 3eie_A Vacuolar protein sortin 98.4 3.3E-06 1.1E-10 90.3 15.1 184 189-396 15-228 (322)
188 2qz4_A Paraplegin; AAA+, SPG7, 98.4 3.5E-06 1.2E-10 87.4 14.7 182 191-395 5-221 (262)
189 1sxj_D Activator 1 41 kDa subu 98.4 1.6E-06 5.5E-11 94.5 12.5 195 188-395 33-234 (353)
190 1d2n_A N-ethylmaleimide-sensit 98.4 1.2E-05 4.2E-10 83.7 18.3 169 192-388 33-229 (272)
191 4h09_A Hypothetical leucine ri 98.4 0.00012 4.2E-09 80.3 27.4 144 733-899 213-356 (379)
192 3uk6_A RUVB-like 2; hexameric 98.3 9.5E-06 3.2E-10 88.9 17.8 201 191-395 43-302 (368)
193 1sxj_E Activator 1 40 kDa subu 98.3 2.4E-06 8.3E-11 93.1 12.5 198 188-395 10-236 (354)
194 1xwi_A SKD1 protein; VPS4B, AA 98.3 1.6E-05 5.3E-10 84.8 17.6 183 190-396 10-223 (322)
195 4h09_A Hypothetical leucine ri 98.3 6.2E-05 2.1E-09 82.7 23.1 132 756-909 212-343 (379)
196 1l8q_A Chromosomal replication 98.3 1.3E-05 4.4E-10 86.0 16.1 177 191-391 10-203 (324)
197 2qp9_X Vacuolar protein sortin 98.2 3.2E-05 1.1E-09 83.6 19.1 183 190-396 49-261 (355)
198 3pvs_A Replication-associated 98.2 1.7E-05 5.7E-10 88.2 17.0 177 189-394 23-213 (447)
199 3syl_A Protein CBBX; photosynt 98.2 1.3E-05 4.3E-10 85.5 15.3 151 193-365 32-218 (309)
200 3vfd_A Spastin; ATPase, microt 98.2 1.7E-05 5.9E-10 87.2 16.2 185 188-396 111-326 (389)
201 3b9p_A CG5977-PA, isoform A; A 98.2 1.8E-05 6.3E-10 83.6 15.9 185 188-396 17-233 (297)
202 2p65_A Hypothetical protein PF 98.2 1E-05 3.4E-10 78.8 12.7 50 190-241 20-69 (187)
203 3u61_B DNA polymerase accessor 98.2 2.2E-05 7.4E-10 84.2 15.7 177 189-392 23-212 (324)
204 2zan_A Vacuolar protein sortin 98.2 2.7E-05 9.2E-10 86.9 16.6 183 189-395 131-344 (444)
205 3cf0_A Transitional endoplasmi 98.1 4.5E-05 1.5E-09 80.6 16.8 175 190-390 13-222 (301)
206 1a5t_A Delta prime, HOLB; zinc 98.1 6.2E-05 2.1E-09 80.8 17.2 182 198-396 8-205 (334)
207 3n70_A Transport activator; si 98.0 8.3E-06 2.9E-10 75.6 7.1 47 193-239 2-48 (145)
208 1io0_A Tropomodulin; LRR prote 97.9 5.1E-07 1.7E-11 87.9 -2.6 93 813-911 61-163 (185)
209 3hu3_A Transitional endoplasmi 97.9 0.0001 3.4E-09 82.8 15.5 178 192-394 204-413 (489)
210 1lv7_A FTSH; alpha/beta domain 97.9 0.00014 4.8E-09 74.8 15.6 180 189-393 9-222 (257)
211 1in4_A RUVB, holliday junction 97.9 0.00051 1.7E-08 73.6 20.4 174 190-395 23-222 (334)
212 4b4t_J 26S protease regulatory 97.9 0.00011 3.8E-09 78.9 14.6 173 191-389 147-354 (405)
213 1sxj_C Activator 1 40 kDa subu 97.9 6.1E-05 2.1E-09 81.2 12.9 182 190-393 23-209 (340)
214 3pxg_A Negative regulator of g 97.9 0.00012 4.2E-09 82.2 15.8 149 189-364 177-338 (468)
215 3e4g_A ATP synthase subunit S, 97.9 9E-06 3.1E-10 76.7 4.8 38 737-774 61-98 (176)
216 1qvr_A CLPB protein; coiled co 97.8 8.8E-05 3E-09 90.3 13.0 155 189-363 167-344 (854)
217 4b4t_H 26S protease regulatory 97.8 0.00029 9.8E-09 76.7 15.2 171 192-388 209-414 (467)
218 3ec2_A DNA replication protein 97.8 0.0001 3.5E-09 71.2 10.8 44 197-240 19-63 (180)
219 4b4t_L 26S protease subunit RP 97.8 0.00025 8.7E-09 77.4 14.9 172 191-388 180-386 (437)
220 2w58_A DNAI, primosome compone 97.8 6.9E-05 2.3E-09 74.0 9.5 61 191-251 24-90 (202)
221 4b4t_M 26S protease regulatory 97.7 0.00012 3.9E-09 80.1 10.9 171 190-388 179-386 (434)
222 4b4t_K 26S protease regulatory 97.7 0.00012 4.1E-09 79.8 11.0 53 191-243 171-234 (428)
223 1ofh_A ATP-dependent HSL prote 97.7 6E-05 2.1E-09 80.2 8.6 49 192-240 15-75 (310)
224 1io0_A Tropomodulin; LRR prote 97.7 1.9E-06 6.5E-11 83.8 -3.0 90 793-888 65-164 (185)
225 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00042 1.4E-08 83.4 16.7 156 189-364 183-362 (758)
226 2ce7_A Cell division protein F 97.7 0.00084 2.9E-08 74.6 17.5 174 191-389 15-221 (476)
227 2bjv_A PSP operon transcriptio 97.6 0.00039 1.3E-08 71.8 13.3 49 192-240 6-54 (265)
228 4fcw_A Chaperone protein CLPB; 97.6 0.00027 9.1E-09 75.1 12.3 58 193-250 18-82 (311)
229 2gno_A DNA polymerase III, gam 97.6 0.00021 7.2E-09 75.0 11.0 146 196-364 1-152 (305)
230 3rw6_A Nuclear RNA export fact 97.6 1.6E-05 5.4E-10 81.2 2.1 67 816-892 169-237 (267)
231 2r62_A Cell division protease 97.6 5.2E-05 1.8E-09 78.7 5.9 153 190-364 9-196 (268)
232 4b4t_I 26S protease regulatory 97.6 0.00043 1.5E-08 74.5 12.9 172 191-388 181-387 (437)
233 3pxi_A Negative regulator of g 97.6 0.0005 1.7E-08 82.6 14.7 149 189-364 177-338 (758)
234 3e4g_A ATP synthase subunit S, 97.5 4E-05 1.4E-09 72.3 3.6 91 576-681 52-151 (176)
235 1ojl_A Transcriptional regulat 97.5 0.00065 2.2E-08 71.5 12.8 48 192-239 2-49 (304)
236 3co5_A Putative two-component 97.5 3.4E-05 1.2E-09 71.2 1.9 48 192-239 4-51 (143)
237 2c9o_A RUVB-like 1; hexameric 97.4 0.0024 8.2E-08 71.5 17.1 50 191-240 36-88 (456)
238 1ixz_A ATP-dependent metallopr 97.4 0.0023 8E-08 65.4 15.2 153 190-364 14-199 (254)
239 2kjq_A DNAA-related protein; s 97.4 0.00026 8.8E-09 65.6 6.6 36 215-250 36-71 (149)
240 1iy2_A ATP-dependent metallopr 97.3 0.004 1.4E-07 64.6 16.4 177 188-389 36-245 (278)
241 3pxi_A Negative regulator of g 97.3 0.00078 2.7E-08 80.9 12.4 150 192-364 491-675 (758)
242 3rw6_A Nuclear RNA export fact 97.3 0.00013 4.4E-09 74.5 3.7 84 793-881 170-257 (267)
243 3cf2_A TER ATPase, transitiona 97.3 0.0016 5.5E-08 76.7 13.3 173 192-389 204-407 (806)
244 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0075 2.6E-07 67.4 17.2 172 189-389 28-236 (499)
245 2x8a_A Nuclear valosin-contain 97.1 0.016 5.3E-07 59.8 17.1 151 192-364 10-191 (274)
246 3t15_A Ribulose bisphosphate c 97.0 0.0031 1.1E-07 65.9 11.5 30 213-242 34-63 (293)
247 1ypw_A Transitional endoplasmi 97.0 0.0032 1.1E-07 75.5 12.7 151 191-364 203-385 (806)
248 1um8_A ATP-dependent CLP prote 96.9 0.0043 1.5E-07 67.6 12.0 25 216-240 73-97 (376)
249 1g5t_A COB(I)alamin adenosyltr 96.8 0.0012 4E-08 63.2 5.0 118 216-334 29-163 (196)
250 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0044 1.5E-07 74.5 10.4 48 192-239 458-512 (758)
251 2cvh_A DNA repair and recombin 96.6 0.0065 2.2E-07 60.4 9.9 46 203-251 8-53 (220)
252 2qgz_A Helicase loader, putati 96.6 0.0061 2.1E-07 64.0 9.7 53 198-250 134-188 (308)
253 3rfe_A Platelet glycoprotein I 96.6 0.0026 8.7E-08 57.1 5.7 16 842-857 32-47 (130)
254 3m6a_A ATP-dependent protease 96.6 0.0045 1.5E-07 70.7 9.2 51 193-243 82-136 (543)
255 1eiw_A Hypothetical protein MT 96.5 0.0019 6.5E-08 55.3 3.9 63 19-100 2-64 (111)
256 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0028 9.6E-08 65.5 5.1 71 215-307 123-193 (331)
257 1pgv_A TMD-1, tropomodulin TMD 96.3 0.00028 9.5E-09 67.9 -2.6 113 793-911 41-169 (197)
258 1vma_A Cell division protein F 96.2 0.044 1.5E-06 57.0 13.5 51 199-249 82-138 (306)
259 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0095 3.2E-07 59.8 8.0 35 216-250 24-58 (235)
260 1qvr_A CLPB protein; coiled co 96.2 0.0099 3.4E-07 72.2 9.5 49 193-241 559-614 (854)
261 2b8t_A Thymidine kinase; deoxy 96.1 0.005 1.7E-07 60.8 5.2 110 215-334 12-126 (223)
262 3bh0_A DNAB-like replicative h 96.1 0.033 1.1E-06 58.6 11.8 65 200-271 54-118 (315)
263 2zr9_A Protein RECA, recombina 96.1 0.023 7.9E-07 60.6 10.6 51 201-251 46-97 (349)
264 3hr8_A Protein RECA; alpha and 96.0 0.015 5.3E-07 61.7 8.9 102 201-307 46-150 (356)
265 1xp8_A RECA protein, recombina 96.0 0.023 7.9E-07 60.8 10.4 52 200-251 58-110 (366)
266 3io5_A Recombination and repai 95.8 0.046 1.6E-06 56.3 10.8 49 202-251 12-66 (333)
267 4a1f_A DNAB helicase, replicat 95.7 0.017 5.8E-07 60.9 7.8 70 196-272 28-97 (338)
268 2r44_A Uncharacterized protein 95.7 0.0057 1.9E-07 65.4 4.1 47 192-242 27-73 (331)
269 2q6t_A DNAB replication FORK h 95.7 0.078 2.7E-06 58.9 13.3 67 199-272 185-252 (444)
270 1rz3_A Hypothetical protein rb 95.6 0.02 6.9E-07 55.9 7.3 44 197-240 3-47 (201)
271 1u94_A RECA protein, recombina 95.6 0.017 5.7E-07 61.7 7.0 51 201-251 48-99 (356)
272 1zu4_A FTSY; GTPase, signal re 95.5 0.054 1.9E-06 56.9 10.5 36 214-249 104-139 (320)
273 2ehv_A Hypothetical protein PH 95.5 0.033 1.1E-06 56.5 8.6 36 215-250 30-66 (251)
274 3jvv_A Twitching mobility prot 95.4 0.021 7.3E-07 60.9 7.3 110 216-337 124-234 (356)
275 3dm5_A SRP54, signal recogniti 95.4 0.22 7.6E-06 54.2 15.3 36 214-249 99-134 (443)
276 1qhx_A CPT, protein (chloramph 95.4 0.0078 2.7E-07 57.5 3.2 25 216-240 4-28 (178)
277 3hws_A ATP-dependent CLP prote 95.3 0.012 4.2E-07 63.6 5.1 48 193-240 16-76 (363)
278 3c8u_A Fructokinase; YP_612366 95.3 0.016 5.5E-07 57.0 5.5 40 201-240 8-47 (208)
279 1jr3_D DNA polymerase III, del 95.3 0.24 8.2E-06 52.8 15.0 155 214-394 17-183 (343)
280 1v5w_A DMC1, meiotic recombina 95.2 0.091 3.1E-06 56.0 11.4 50 202-251 109-164 (343)
281 3cf2_A TER ATPase, transitiona 95.2 0.019 6.6E-07 67.6 6.5 151 192-364 477-661 (806)
282 3umf_A Adenylate kinase; rossm 95.2 0.044 1.5E-06 53.8 8.1 27 213-239 27-53 (217)
283 1n0w_A DNA repair protein RAD5 95.2 0.041 1.4E-06 55.4 8.2 50 202-251 11-66 (243)
284 2eyu_A Twitching motility prot 95.2 0.023 8E-07 57.8 6.3 112 214-336 24-135 (261)
285 4eun_A Thermoresistant glucoki 95.2 0.071 2.4E-06 51.9 9.5 25 215-239 29-53 (200)
286 2z43_A DNA repair and recombin 95.1 0.044 1.5E-06 58.0 8.4 50 202-251 94-149 (324)
287 3kb2_A SPBC2 prophage-derived 95.0 0.012 4.1E-07 55.8 3.4 25 216-240 2-26 (173)
288 3sr0_A Adenylate kinase; phosp 95.0 0.048 1.6E-06 53.2 7.7 87 217-314 2-93 (206)
289 1odf_A YGR205W, hypothetical 3 94.9 0.029 9.9E-07 58.1 6.0 30 212-241 28-57 (290)
290 3trf_A Shikimate kinase, SK; a 94.9 0.014 4.9E-07 56.1 3.5 26 215-240 5-30 (185)
291 3vaa_A Shikimate kinase, SK; s 94.9 0.015 5E-07 56.8 3.6 26 215-240 25-50 (199)
292 2r6a_A DNAB helicase, replicat 94.8 0.081 2.8E-06 58.9 10.0 48 202-250 191-239 (454)
293 2px0_A Flagellar biosynthesis 94.7 0.092 3.2E-06 54.5 9.3 28 214-241 104-131 (296)
294 2i1q_A DNA repair and recombin 94.6 0.066 2.3E-06 56.6 8.3 38 202-239 85-122 (322)
295 2xxa_A Signal recognition part 94.6 0.32 1.1E-05 53.3 13.8 29 214-242 99-127 (433)
296 1q57_A DNA primase/helicase; d 94.6 0.14 4.9E-06 57.8 11.5 55 213-273 240-295 (503)
297 3uie_A Adenylyl-sulfate kinase 94.6 0.032 1.1E-06 54.4 5.3 27 214-240 24-50 (200)
298 1nks_A Adenylate kinase; therm 94.6 0.032 1.1E-06 53.9 5.3 26 216-241 2-27 (194)
299 3tlx_A Adenylate kinase 2; str 94.6 0.03 1E-06 56.5 5.2 41 199-239 13-53 (243)
300 3nbx_X ATPase RAVA; AAA+ ATPas 94.6 0.016 5.4E-07 64.9 3.3 44 192-239 22-65 (500)
301 2ga8_A Hypothetical 39.9 kDa p 94.6 0.031 1.1E-06 58.7 5.3 48 196-243 3-52 (359)
302 3fwy_A Light-independent proto 94.5 0.03 1E-06 58.7 5.2 38 213-250 46-83 (314)
303 1ypw_A Transitional endoplasmi 94.5 0.0095 3.2E-07 71.4 1.4 53 191-243 476-539 (806)
304 1zuh_A Shikimate kinase; alpha 94.5 0.021 7.3E-07 53.8 3.5 27 214-240 6-32 (168)
305 3bgw_A DNAB-like replicative h 94.5 0.17 5.8E-06 55.9 11.3 50 200-250 183-232 (444)
306 1sky_E F1-ATPase, F1-ATP synth 94.5 0.095 3.2E-06 57.3 9.0 29 217-245 153-181 (473)
307 3lw7_A Adenylate kinase relate 94.4 0.018 6.3E-07 54.7 3.1 22 216-238 2-23 (179)
308 3kl4_A SRP54, signal recogniti 94.4 0.061 2.1E-06 58.7 7.4 36 214-249 96-131 (433)
309 1xjc_A MOBB protein homolog; s 94.4 0.037 1.3E-06 51.7 4.9 29 214-242 3-31 (169)
310 1ex7_A Guanylate kinase; subst 94.4 0.015 5.1E-07 55.6 2.2 28 216-243 2-29 (186)
311 3ice_A Transcription terminati 94.4 0.018 6.3E-07 60.7 3.0 28 216-243 175-202 (422)
312 2yvu_A Probable adenylyl-sulfa 94.3 0.038 1.3E-06 53.1 5.0 29 214-242 12-40 (186)
313 1j8m_F SRP54, signal recogniti 94.3 0.11 3.8E-06 53.9 8.8 36 215-250 98-133 (297)
314 1pgv_A TMD-1, tropomodulin TMD 94.3 0.0043 1.5E-07 59.6 -1.8 91 813-909 37-136 (197)
315 1ly1_A Polynucleotide kinase; 94.3 0.024 8.1E-07 54.2 3.5 22 216-237 3-24 (181)
316 2rhm_A Putative kinase; P-loop 94.2 0.03 1E-06 54.2 4.1 25 215-239 5-29 (193)
317 1kag_A SKI, shikimate kinase I 94.2 0.019 6.6E-07 54.4 2.7 25 216-240 5-29 (173)
318 1kgd_A CASK, peripheral plasma 94.2 0.023 7.7E-07 54.4 3.1 26 215-240 5-30 (180)
319 3iij_A Coilin-interacting nucl 94.2 0.02 7E-07 54.7 2.8 25 215-239 11-35 (180)
320 1g8p_A Magnesium-chelatase 38 94.2 0.025 8.6E-07 60.8 3.8 49 190-240 22-70 (350)
321 1via_A Shikimate kinase; struc 94.2 0.022 7.4E-07 54.2 2.9 24 217-240 6-29 (175)
322 1tue_A Replication protein E1; 94.1 0.044 1.5E-06 52.5 4.9 44 197-241 41-84 (212)
323 2ze6_A Isopentenyl transferase 94.0 0.029 1E-06 56.9 3.7 25 216-240 2-26 (253)
324 1zp6_A Hypothetical protein AT 94.0 0.028 9.4E-07 54.3 3.3 24 215-238 9-32 (191)
325 1kht_A Adenylate kinase; phosp 94.0 0.03 1E-06 54.1 3.6 26 216-241 4-29 (192)
326 3t61_A Gluconokinase; PSI-biol 94.0 0.024 8.4E-07 55.3 2.9 25 215-239 18-42 (202)
327 2iyv_A Shikimate kinase, SK; t 94.0 0.024 8.1E-07 54.4 2.8 24 217-240 4-27 (184)
328 2c95_A Adenylate kinase 1; tra 93.9 0.033 1.1E-06 54.0 3.7 25 215-239 9-33 (196)
329 2jaq_A Deoxyguanosine kinase; 93.9 0.03 1E-06 54.8 3.3 24 217-240 2-25 (205)
330 2vli_A Antibiotic resistance p 93.8 0.025 8.7E-07 54.1 2.6 26 215-240 5-30 (183)
331 2plr_A DTMP kinase, probable t 93.8 0.055 1.9E-06 53.2 5.2 28 216-243 5-32 (213)
332 3a00_A Guanylate kinase, GMP k 93.8 0.029 9.8E-07 54.0 2.9 29 216-244 2-30 (186)
333 2bdt_A BH3686; alpha-beta prot 93.8 0.049 1.7E-06 52.5 4.6 31 216-250 3-33 (189)
334 1nn5_A Similar to deoxythymidy 93.7 0.058 2E-06 53.1 5.2 28 215-242 9-36 (215)
335 2ewv_A Twitching motility prot 93.7 0.1 3.4E-06 56.3 7.4 109 215-335 136-245 (372)
336 3rfe_A Platelet glycoprotein I 93.7 0.093 3.2E-06 46.8 6.0 34 738-771 32-65 (130)
337 1knq_A Gluconate kinase; ALFA/ 93.7 0.047 1.6E-06 51.8 4.3 25 215-239 8-32 (175)
338 1e6c_A Shikimate kinase; phosp 93.7 0.03 1E-06 53.0 2.8 25 216-240 3-27 (173)
339 1ukz_A Uridylate kinase; trans 93.6 0.041 1.4E-06 53.7 3.8 26 214-239 14-39 (203)
340 1tev_A UMP-CMP kinase; ploop, 93.6 0.04 1.4E-06 53.3 3.8 24 216-239 4-27 (196)
341 3p32_A Probable GTPase RV1496/ 93.6 0.1 3.5E-06 55.9 7.3 40 203-242 67-106 (355)
342 2bwj_A Adenylate kinase 5; pho 93.6 0.038 1.3E-06 53.7 3.6 25 216-240 13-37 (199)
343 3tau_A Guanylate kinase, GMP k 93.6 0.03 1E-06 55.0 2.8 26 215-240 8-33 (208)
344 3tqc_A Pantothenate kinase; bi 93.6 0.068 2.3E-06 55.9 5.5 47 194-240 69-117 (321)
345 3cm0_A Adenylate kinase; ATP-b 93.5 0.042 1.4E-06 52.7 3.6 24 216-239 5-28 (186)
346 1y63_A LMAJ004144AAA protein; 93.5 0.043 1.5E-06 52.6 3.7 24 215-238 10-33 (184)
347 1g41_A Heat shock protein HSLU 93.5 0.049 1.7E-06 59.5 4.5 52 192-243 15-78 (444)
348 1uj2_A Uridine-cytidine kinase 93.5 0.042 1.4E-06 55.8 3.8 28 213-240 20-47 (252)
349 2pt5_A Shikimate kinase, SK; a 93.5 0.042 1.4E-06 51.7 3.5 24 217-240 2-25 (168)
350 3e70_C DPA, signal recognition 93.5 0.1 3.6E-06 54.8 6.8 30 213-242 127-156 (328)
351 2cdn_A Adenylate kinase; phosp 93.5 0.051 1.7E-06 53.0 4.2 26 215-240 20-45 (201)
352 1aky_A Adenylate kinase; ATP:A 93.4 0.042 1.4E-06 54.5 3.5 26 215-240 4-29 (220)
353 2dr3_A UPF0273 protein PH0284; 93.4 0.068 2.3E-06 54.0 5.1 36 215-250 23-58 (247)
354 2qor_A Guanylate kinase; phosp 93.3 0.036 1.2E-06 54.3 2.7 26 215-240 12-37 (204)
355 1uf9_A TT1252 protein; P-loop, 93.3 0.05 1.7E-06 53.0 3.8 26 213-238 6-31 (203)
356 4a74_A DNA repair and recombin 93.3 0.089 3.1E-06 52.4 5.8 49 203-251 13-67 (231)
357 3ney_A 55 kDa erythrocyte memb 93.3 0.044 1.5E-06 52.7 3.2 27 214-240 18-44 (197)
358 1qf9_A UMP/CMP kinase, protein 93.3 0.049 1.7E-06 52.6 3.6 25 215-239 6-30 (194)
359 2wwf_A Thymidilate kinase, put 93.2 0.052 1.8E-06 53.4 3.8 28 215-242 10-37 (212)
360 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.052 1.8E-06 55.4 3.8 26 215-240 4-29 (260)
361 1cke_A CK, MSSA, protein (cyti 93.1 0.051 1.7E-06 54.1 3.6 24 216-239 6-29 (227)
362 1rj9_A FTSY, signal recognitio 93.0 0.086 2.9E-06 54.9 5.3 35 214-249 101-135 (304)
363 2if2_A Dephospho-COA kinase; a 93.0 0.051 1.7E-06 53.1 3.4 22 216-237 2-23 (204)
364 3asz_A Uridine kinase; cytidin 93.0 0.066 2.3E-06 52.6 4.1 27 214-240 5-31 (211)
365 2pbr_A DTMP kinase, thymidylat 92.9 0.056 1.9E-06 52.2 3.5 24 217-240 2-25 (195)
366 3tr0_A Guanylate kinase, GMP k 92.9 0.05 1.7E-06 53.2 3.2 24 216-239 8-31 (205)
367 3cmu_A Protein RECA, recombina 92.9 0.15 5.2E-06 65.6 8.3 95 203-306 1414-1515(2050)
368 2bbw_A Adenylate kinase 4, AK4 92.9 0.057 2E-06 54.6 3.7 25 215-239 27-51 (246)
369 2ck3_D ATP synthase subunit be 92.9 0.27 9.1E-06 53.7 9.0 34 216-249 154-188 (482)
370 2grj_A Dephospho-COA kinase; T 92.9 0.061 2.1E-06 51.8 3.6 26 214-239 11-36 (192)
371 2yhs_A FTSY, cell division pro 92.9 0.24 8.1E-06 54.6 8.7 36 214-250 292-327 (503)
372 1zak_A Adenylate kinase; ATP:A 92.9 0.05 1.7E-06 54.0 3.1 26 215-240 5-30 (222)
373 1ye8_A Protein THEP1, hypothet 92.9 0.064 2.2E-06 51.0 3.7 24 217-240 2-25 (178)
374 3b9q_A Chloroplast SRP recepto 92.8 0.14 4.9E-06 53.2 6.7 35 214-249 99-133 (302)
375 2hf9_A Probable hydrogenase ni 92.8 0.14 4.7E-06 50.9 6.3 39 201-241 26-64 (226)
376 1gvn_B Zeta; postsegregational 92.8 0.07 2.4E-06 55.2 4.3 26 214-239 32-57 (287)
377 2wsm_A Hydrogenase expression/ 92.8 0.11 3.9E-06 51.3 5.7 42 199-242 16-57 (221)
378 1zd8_A GTP:AMP phosphotransfer 92.8 0.052 1.8E-06 54.1 3.2 25 215-239 7-31 (227)
379 2qt1_A Nicotinamide riboside k 92.7 0.064 2.2E-06 52.5 3.7 25 214-238 20-44 (207)
380 2j41_A Guanylate kinase; GMP, 92.7 0.057 1.9E-06 52.8 3.2 24 216-239 7-30 (207)
381 3nwj_A ATSK2; P loop, shikimat 92.7 0.051 1.7E-06 54.8 2.9 25 216-240 49-73 (250)
382 2p5t_B PEZT; postsegregational 92.6 0.091 3.1E-06 53.3 4.8 27 214-240 31-57 (253)
383 4gp7_A Metallophosphoesterase; 92.6 0.05 1.7E-06 51.4 2.5 21 215-235 9-29 (171)
384 3fb4_A Adenylate kinase; psych 92.6 0.065 2.2E-06 52.9 3.6 23 217-239 2-24 (216)
385 2r8r_A Sensor protein; KDPD, P 92.6 0.13 4.4E-06 50.3 5.5 27 216-242 7-33 (228)
386 3l0o_A Transcription terminati 92.6 0.22 7.7E-06 52.5 7.5 26 216-241 176-201 (427)
387 3hyn_A Putative signal transdu 92.5 0.7 2.4E-05 42.5 9.7 90 37-129 33-132 (189)
388 3k1j_A LON protease, ATP-depen 92.5 0.078 2.7E-06 61.5 4.6 48 191-242 40-87 (604)
389 1jjv_A Dephospho-COA kinase; P 92.5 0.062 2.1E-06 52.6 3.2 22 216-237 3-24 (206)
390 3geh_A MNME, tRNA modification 92.5 0.26 8.7E-06 54.6 8.4 22 217-238 226-247 (462)
391 1gtv_A TMK, thymidylate kinase 92.5 0.059 2E-06 53.0 3.0 25 217-241 2-26 (214)
392 2z0h_A DTMP kinase, thymidylat 92.4 0.072 2.5E-06 51.6 3.6 25 217-241 2-26 (197)
393 2pez_A Bifunctional 3'-phospho 92.4 0.082 2.8E-06 50.3 3.9 26 215-240 5-30 (179)
394 4e22_A Cytidylate kinase; P-lo 92.4 0.066 2.2E-06 54.3 3.3 26 215-240 27-52 (252)
395 1puj_A YLQF, conserved hypothe 92.3 0.87 3E-05 46.7 11.7 50 63-118 12-61 (282)
396 3be4_A Adenylate kinase; malar 92.3 0.066 2.3E-06 52.9 3.1 24 216-239 6-29 (217)
397 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.13 4.3E-06 54.5 5.4 105 216-335 172-276 (330)
398 3dl0_A Adenylate kinase; phosp 92.3 0.069 2.3E-06 52.7 3.2 23 217-239 2-24 (216)
399 1lvg_A Guanylate kinase, GMP k 92.3 0.059 2E-06 52.4 2.7 25 216-240 5-29 (198)
400 3d3q_A TRNA delta(2)-isopenten 92.2 0.078 2.7E-06 55.6 3.6 25 216-240 8-32 (340)
401 2og2_A Putative signal recogni 92.2 0.2 6.7E-06 53.3 6.7 35 214-249 156-190 (359)
402 3r20_A Cytidylate kinase; stru 92.1 0.082 2.8E-06 52.4 3.5 26 215-240 9-34 (233)
403 3end_A Light-independent proto 92.1 0.13 4.4E-06 54.0 5.2 38 213-250 39-76 (307)
404 2v3c_C SRP54, signal recogniti 92.0 0.12 4E-06 56.8 4.9 36 214-249 98-133 (432)
405 1m7g_A Adenylylsulfate kinase; 92.0 0.093 3.2E-06 51.5 3.8 26 215-240 25-50 (211)
406 2f6r_A COA synthase, bifunctio 92.0 0.09 3.1E-06 54.2 3.8 25 213-237 73-97 (281)
407 1cp2_A CP2, nitrogenase iron p 92.0 0.14 4.9E-06 52.4 5.3 35 216-250 2-36 (269)
408 1ak2_A Adenylate kinase isoenz 91.9 0.094 3.2E-06 52.4 3.8 26 215-240 16-41 (233)
409 3ake_A Cytidylate kinase; CMP 91.9 0.091 3.1E-06 51.4 3.6 24 217-240 4-27 (208)
410 3crm_A TRNA delta(2)-isopenten 91.9 0.078 2.7E-06 55.2 3.2 24 216-239 6-29 (323)
411 1yrb_A ATP(GTP)binding protein 91.9 0.15 5.1E-06 52.0 5.4 27 214-240 13-39 (262)
412 3a8t_A Adenylate isopentenyltr 91.9 0.058 2E-06 56.4 2.1 25 215-239 40-64 (339)
413 2jeo_A Uridine-cytidine kinase 91.9 0.1 3.5E-06 52.6 4.0 26 214-239 24-49 (245)
414 1np6_A Molybdopterin-guanine d 91.8 0.15 5.2E-06 48.0 4.8 27 215-241 6-32 (174)
415 1u0j_A DNA replication protein 91.8 0.16 5.4E-06 51.1 5.1 39 201-239 90-128 (267)
416 2afh_E Nitrogenase iron protei 91.8 0.15 5.2E-06 52.8 5.3 36 215-250 2-37 (289)
417 3aez_A Pantothenate kinase; tr 91.8 0.11 3.7E-06 54.4 4.1 28 213-240 88-115 (312)
418 1a7j_A Phosphoribulokinase; tr 91.7 0.073 2.5E-06 55.1 2.7 27 214-240 4-30 (290)
419 3zvl_A Bifunctional polynucleo 91.7 0.33 1.1E-05 53.2 8.0 27 213-239 256-282 (416)
420 1e4v_A Adenylate kinase; trans 91.7 0.1 3.5E-06 51.4 3.6 23 217-239 2-24 (214)
421 1znw_A Guanylate kinase, GMP k 91.6 0.086 2.9E-06 51.6 3.1 25 215-239 20-44 (207)
422 1htw_A HI0065; nucleotide-bind 91.6 0.18 6.1E-06 46.7 5.0 26 214-239 32-57 (158)
423 2v54_A DTMP kinase, thymidylat 91.6 0.092 3.1E-06 51.2 3.2 24 216-239 5-28 (204)
424 2xb4_A Adenylate kinase; ATP-b 91.6 0.1 3.4E-06 51.8 3.5 23 217-239 2-24 (223)
425 1fx0_B ATP synthase beta chain 91.5 0.31 1E-05 53.4 7.4 52 216-270 166-218 (498)
426 2f1r_A Molybdopterin-guanine d 91.5 0.081 2.8E-06 49.8 2.6 26 216-241 3-28 (171)
427 1svm_A Large T antigen; AAA+ f 91.5 0.17 6E-06 54.1 5.5 29 211-239 165-193 (377)
428 1pzn_A RAD51, DNA repair and r 91.5 0.19 6.6E-06 53.5 5.8 49 203-251 119-173 (349)
429 2orw_A Thymidine kinase; TMTK, 91.5 0.17 5.9E-06 48.3 4.9 26 216-241 4-29 (184)
430 1ls1_A Signal recognition part 91.5 0.17 5.8E-06 52.5 5.2 36 214-249 97-132 (295)
431 3exa_A TRNA delta(2)-isopenten 91.5 0.091 3.1E-06 54.1 3.0 24 216-239 4-27 (322)
432 1vht_A Dephospho-COA kinase; s 91.4 0.11 3.9E-06 51.2 3.7 23 215-237 4-26 (218)
433 3cmw_A Protein RECA, recombina 91.4 0.27 9.3E-06 62.6 7.8 101 198-307 714-821 (1706)
434 1z6g_A Guanylate kinase; struc 91.4 0.083 2.8E-06 52.2 2.7 24 216-239 24-47 (218)
435 2zts_A Putative uncharacterize 91.3 0.13 4.5E-06 51.9 4.2 36 215-250 30-66 (251)
436 3foz_A TRNA delta(2)-isopenten 91.3 0.11 3.7E-06 53.4 3.4 26 214-239 9-34 (316)
437 2j37_W Signal recognition part 91.3 0.27 9.4E-06 54.7 6.9 29 214-242 100-128 (504)
438 1cr0_A DNA primase/helicase; R 91.3 0.17 5.7E-06 52.8 5.0 36 215-250 35-71 (296)
439 1tf7_A KAIC; homohexamer, hexa 91.2 0.59 2E-05 53.0 9.8 47 203-249 269-315 (525)
440 1sq5_A Pantothenate kinase; P- 91.1 0.21 7.3E-06 52.2 5.6 28 213-240 78-105 (308)
441 2i3b_A HCR-ntpase, human cance 91.1 0.1 3.6E-06 50.0 3.0 24 217-240 3-26 (189)
442 1s96_A Guanylate kinase, GMP k 91.1 0.11 3.9E-06 51.1 3.2 26 215-240 16-41 (219)
443 2j9r_A Thymidine kinase; TK1, 90.9 0.51 1.8E-05 45.6 7.5 110 215-335 28-139 (214)
444 2p67_A LAO/AO transport system 90.9 0.32 1.1E-05 51.7 6.8 30 213-242 54-83 (341)
445 2qmh_A HPR kinase/phosphorylas 90.8 0.1 3.5E-06 49.7 2.5 24 216-239 35-58 (205)
446 1nlf_A Regulatory protein REPA 90.7 0.21 7.3E-06 51.4 5.1 25 216-240 31-55 (279)
447 3lnc_A Guanylate kinase, GMP k 90.6 0.095 3.2E-06 52.3 2.2 24 216-239 28-52 (231)
448 1g8f_A Sulfate adenylyltransfe 90.6 0.19 6.4E-06 56.1 4.8 28 214-241 394-421 (511)
449 3cnl_A YLQF, putative uncharac 90.6 0.5 1.7E-05 47.9 7.6 30 63-92 10-39 (262)
450 3llm_A ATP-dependent RNA helic 90.4 1.1 3.7E-05 44.6 9.9 21 216-236 77-97 (235)
451 1q3t_A Cytidylate kinase; nucl 90.4 0.17 5.7E-06 50.7 3.8 27 213-239 14-40 (236)
452 3hjn_A DTMP kinase, thymidylat 90.1 0.46 1.6E-05 45.8 6.6 33 217-249 2-34 (197)
453 3b85_A Phosphate starvation-in 90.0 0.14 4.7E-06 50.0 2.8 23 216-238 23-45 (208)
454 3eph_A TRNA isopentenyltransfe 90.0 0.18 6.1E-06 54.0 3.8 25 216-240 3-27 (409)
455 3cmu_A Protein RECA, recombina 90.0 0.57 1.9E-05 60.5 8.9 104 194-306 361-471 (2050)
456 2onk_A Molybdate/tungstate ABC 90.0 0.16 5.6E-06 50.8 3.3 25 213-238 23-47 (240)
457 4dzz_A Plasmid partitioning pr 89.9 0.25 8.7E-06 48.0 4.7 35 216-250 2-37 (206)
458 1ltq_A Polynucleotide kinase; 89.9 0.17 5.6E-06 52.9 3.4 23 216-238 3-25 (301)
459 3fdi_A Uncharacterized protein 89.8 0.19 6.4E-06 48.8 3.6 25 216-240 7-31 (201)
460 2ffh_A Protein (FFH); SRP54, s 89.8 0.29 1E-05 53.2 5.4 36 214-249 97-132 (425)
461 1oix_A RAS-related protein RAB 89.8 0.18 6.1E-06 48.5 3.4 24 215-238 29-52 (191)
462 4eaq_A DTMP kinase, thymidylat 89.8 0.2 6.9E-06 49.8 3.8 28 214-241 25-52 (229)
463 2ocp_A DGK, deoxyguanosine kin 89.7 0.2 6.9E-06 50.3 3.7 26 215-240 2-27 (241)
464 2axn_A 6-phosphofructo-2-kinas 89.7 0.29 9.8E-06 55.2 5.3 30 214-243 34-63 (520)
465 2qm8_A GTPase/ATPase; G protei 89.6 0.47 1.6E-05 50.2 6.7 29 213-241 53-81 (337)
466 3lda_A DNA repair protein RAD5 89.6 0.32 1.1E-05 52.7 5.4 51 201-251 164-220 (400)
467 3kjh_A CO dehydrogenase/acetyl 89.6 0.27 9.1E-06 49.7 4.7 33 218-250 3-35 (254)
468 2pcj_A ABC transporter, lipopr 89.5 0.15 5.3E-06 50.4 2.6 22 216-237 31-52 (224)
469 4hlc_A DTMP kinase, thymidylat 89.4 0.32 1.1E-05 47.3 4.8 29 216-244 3-31 (205)
470 3tif_A Uncharacterized ABC tra 89.3 0.16 5.3E-06 50.8 2.6 22 216-237 32-53 (235)
471 2dyk_A GTP-binding protein; GT 89.3 0.22 7.5E-06 46.0 3.5 22 216-237 2-23 (161)
472 2wji_A Ferrous iron transport 89.3 0.22 7.6E-06 46.4 3.5 22 216-237 4-25 (165)
473 3cr8_A Sulfate adenylyltranfer 89.2 0.31 1.1E-05 55.1 5.1 28 215-242 369-396 (552)
474 3ug7_A Arsenical pump-driving 89.0 0.47 1.6E-05 50.5 6.3 38 213-250 24-61 (349)
475 2orv_A Thymidine kinase; TP4A 88.9 0.68 2.3E-05 45.2 6.7 108 215-334 19-126 (234)
476 3io3_A DEHA2D07832P; chaperone 88.9 0.4 1.4E-05 50.8 5.5 38 213-250 16-55 (348)
477 3fkq_A NTRC-like two-domain pr 88.9 0.37 1.3E-05 52.0 5.3 38 213-250 141-179 (373)
478 2f9l_A RAB11B, member RAS onco 88.8 0.2 6.9E-06 48.4 3.0 24 215-238 5-28 (199)
479 2cbz_A Multidrug resistance-as 88.7 0.18 6.2E-06 50.4 2.6 23 216-238 32-54 (237)
480 3gmt_A Adenylate kinase; ssgci 88.6 0.24 8.2E-06 48.7 3.3 23 217-239 10-32 (230)
481 3gfo_A Cobalt import ATP-bindi 88.6 0.18 6.3E-06 51.5 2.6 22 216-237 35-56 (275)
482 3zq6_A Putative arsenical pump 88.6 0.33 1.1E-05 51.2 4.6 36 215-250 14-49 (324)
483 1tq4_A IIGP1, interferon-induc 88.6 0.22 7.5E-06 54.0 3.3 25 213-237 67-91 (413)
484 2gks_A Bifunctional SAT/APS ki 88.6 0.49 1.7E-05 53.6 6.2 46 196-241 353-398 (546)
485 2d2e_A SUFC protein; ABC-ATPas 88.6 0.22 7.5E-06 50.2 3.1 23 216-238 30-52 (250)
486 4edh_A DTMP kinase, thymidylat 88.5 0.46 1.6E-05 46.5 5.2 27 216-242 7-33 (213)
487 2zej_A Dardarin, leucine-rich 88.5 0.18 6.1E-06 48.1 2.3 21 217-237 4-24 (184)
488 3cmw_A Protein RECA, recombina 88.5 0.56 1.9E-05 59.7 7.2 94 203-305 1418-1518(1706)
489 3cwq_A Para family chromosome 88.5 0.41 1.4E-05 46.7 4.9 33 217-250 2-35 (209)
490 1b0u_A Histidine permease; ABC 88.4 0.19 6.6E-06 51.0 2.6 24 215-238 32-55 (262)
491 3ea0_A ATPase, para family; al 88.4 0.47 1.6E-05 47.6 5.5 37 214-250 3-41 (245)
492 3iqw_A Tail-anchored protein t 88.4 0.45 1.6E-05 50.1 5.5 37 214-250 15-51 (334)
493 2zu0_C Probable ATP-dependent 88.4 0.23 7.8E-06 50.6 3.1 23 216-238 47-69 (267)
494 4g1u_C Hemin import ATP-bindin 88.3 0.2 6.8E-06 51.0 2.5 23 216-238 38-60 (266)
495 1sgw_A Putative ABC transporte 88.3 0.17 5.9E-06 49.5 2.0 23 216-238 36-58 (214)
496 1ji0_A ABC transporter; ATP bi 88.3 0.2 6.9E-06 50.1 2.6 22 216-237 33-54 (240)
497 2ce2_X GTPase HRAS; signaling 88.2 0.26 8.7E-06 45.7 3.1 21 217-237 5-25 (166)
498 2olj_A Amino acid ABC transpor 88.2 0.21 7.1E-06 50.7 2.6 24 215-238 50-73 (263)
499 1fzq_A ADP-ribosylation factor 88.1 0.37 1.2E-05 45.7 4.2 25 213-237 14-38 (181)
500 1g6h_A High-affinity branched- 88.1 0.21 7.1E-06 50.7 2.6 22 216-237 34-55 (257)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=3.4e-46 Score=354.55 Aligned_cols=170 Identities=36% Similarity=0.724 Sum_probs=158.4
Q ss_pred CCCCCcccEEEcCcccccCCcchHHHHHHHHhCCCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHH
Q 002299 16 DPRKNKYDVFLSFRGEDTRGNFTSHLFSALSKKHIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLD 94 (940)
Q Consensus 16 ~~~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~ 94 (940)
+.+.++|||||||+|+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|+|+||++|.||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 56789999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCEEEEEEcccCCcchhhcccchhHHHHHHhhcch-hHHHHHHHHHHHHhhccCCCCCCCCchhHHH
Q 002299 95 ELLKIIDCKNN-SGQMVIPVFYRVDPSHVRKQIGSFGDSISNLEERFP-EKMQRWRNALTEAANLSGFDSHVTRPESKLI 172 (940)
Q Consensus 95 El~~~~~~~~~-~~~~v~pvf~~v~p~~v~~~~~~~~~~~~~~~~~~~-~~~~~w~~~l~~~~~~~g~~~~~~~~~~~~~ 172 (940)
||++|++|+++ +++.|+||||+|+|++||+|+|+|+++|.+++.++. +++++||.||+++|+++||++.....++.++
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i 189 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIA 189 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHHHH
Confidence 99999999864 688999999999999999999999999999999876 7999999999999999999988567888999
Q ss_pred HHHHHhhhhccCc
Q 002299 173 EEIVGEVLKRLDD 185 (940)
Q Consensus 173 ~~i~~~~~~~l~~ 185 (940)
++|+.+|+++++.
T Consensus 190 ~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 190 DKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998753
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-45 Score=345.74 Aligned_cols=171 Identities=43% Similarity=0.703 Sum_probs=143.9
Q ss_pred CCCCCcccEEEcCcccccCCcchHHHHHHHHhCCCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHH
Q 002299 16 DPRKNKYDVFLSFRGEDTRGNFTSHLFSALSKKHIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLD 94 (940)
Q Consensus 16 ~~~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~ 94 (940)
++..++|||||||+|+|+|++|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|+|+||++|.||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 34678999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEEcccCCcchhhcccchhHHHHHHhhcch-hHHHHHHHHHHHHhhccCCCCCCCCchhHHHH
Q 002299 95 ELLKIIDCKNNSGQMVIPVFYRVDPSHVRKQIGSFGDSISNLEERFP-EKMQRWRNALTEAANLSGFDSHVTRPESKLIE 173 (940)
Q Consensus 95 El~~~~~~~~~~~~~v~pvf~~v~p~~v~~~~~~~~~~~~~~~~~~~-~~~~~w~~~l~~~~~~~g~~~~~~~~~~~~~~ 173 (940)
||++|++|.+.+++.|+||||+|+|++||+|+|+|+++|.+++.+.. +++++||.||+++|+++|+++. ++|+++|+
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~ 160 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVD 160 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHH
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHHH
Confidence 99999999998999999999999999999999999999999998844 8999999999999999999884 67999999
Q ss_pred HHHHhhhhccCcccC
Q 002299 174 EIVGEVLKRLDDTFQ 188 (940)
Q Consensus 174 ~i~~~~~~~l~~~~~ 188 (940)
+|+.+|.++++.++|
T Consensus 161 ~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 161 KIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHHTTCC----
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999987654
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.5e-40 Score=386.09 Aligned_cols=299 Identities=15% Similarity=0.149 Sum_probs=236.9
Q ss_pred cchhhhHHHHHHHhhcC-CCCeeEEEEEecCCchhhHHHHHHHH----HhhccccceEEEecchhhhccCCHHHHHHHHH
Q 002299 195 VGVECRIKEIELLLRTG-SAGVCKLGIWGIGGIGKTTIAGAIFT----KMSKHFEGSYFAHNVREAQETGGLAHLRQQLL 269 (940)
Q Consensus 195 vGr~~~~~~l~~~l~~~-~~~~~vv~I~G~gGiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 269 (940)
|||+.++++|.++|..+ ..++++|+|+||||+||||||+++|+ +++.+|+.++|+++... .. .+...+..+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~-~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGT-AP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCC-ST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCC-CC-CCHHHHHHHHH
Confidence 49999999999999764 34689999999999999999999996 68889999999965321 11 35778888888
Q ss_pred HHhhCCCC--C-----CCchhhhHHHHHhhhcCC-ceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhhhhCC
Q 002299 270 STLLDDRN--V-----KNFPYIILNFQSKRFSCK-KVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVLSNCR 341 (940)
Q Consensus 270 ~~~~~~~~--~-----~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~ 341 (940)
..+..... . ..+.+.+...+++.++++ |+||||||||+.+++ .+.. .+||+||||||++.++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 88865421 1 122344678899999996 999999999998876 3322 27999999999999988775
Q ss_pred -CCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcCCCHHHHHHHHH-HHhcCCC
Q 002299 342 -VDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSGRRKEEWKSAMR-KLEIVPH 419 (940)
Q Consensus 342 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~-~l~~~~~ 419 (940)
...+|+|++|+.+||++||.+++|+... .+.+.+++++|+++|+|+||||+++|+.++.+.. +|...+. .+.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccH
Confidence 4468999999999999999999987543 4677889999999999999999999999987743 3333333 2332244
Q ss_pred chHHHHHHhhhcCCChhhHHHHH-----------hhhcccCCCCHHHHHHHHHHC--CCCch-----------hchHHHH
Q 002299 420 MEIQEVLKISYDGLDGHEQDIFL-----------DIACFLVGEDRDQVIRFLDSC--GFFPE-----------IGLRVLV 475 (940)
Q Consensus 420 ~~i~~~l~~s~~~L~~~~k~~~l-----------~la~f~~~~~~~~l~~~~~~~--~~~~~-----------~~l~~L~ 475 (940)
..+..++.+||+.||++.|.||+ |||+||++++.. +..|.++ |++.. .++++|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 56778899999999999999999 999999998766 6788888 66532 2589999
Q ss_pred hccceEEe----CCeeeehHHHHHHHHHHHhhcC
Q 002299 476 DKSLITID----YNTIKMHDLLRDMGREIVRKES 505 (940)
Q Consensus 476 ~~sll~~~----~~~~~mH~lv~~~~~~~~~~~~ 505 (940)
++||++.. ..+|+|||+||++|++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999875 2479999999999998887654
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.5e-35 Score=377.67 Aligned_cols=306 Identities=20% Similarity=0.228 Sum_probs=243.0
Q ss_pred ccCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHH---hhccccce-EEEecchhhhccCCH
Q 002299 186 TFQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTK---MSKHFEGS-YFAHNVREAQETGGL 261 (940)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~---~~~~f~~~-~~~~~~~~~~~~~~~ 261 (940)
.+|..+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ...+|... +|+..... . ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-D-KSGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC-C-HHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc-C-chHH
Confidence 35567788999999999999999766678899999999999999999999975 35556655 46654321 1 1122
Q ss_pred HHHHHHHHHHhhCCCC----CCCchhhhHHHHHhhhcCC--ceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChh
Q 002299 262 AHLRQQLLSTLLDDRN----VKNFPYIILNFQSKRFSCK--KVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQ 335 (940)
Q Consensus 262 ~~l~~~l~~~~~~~~~----~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 335 (940)
......+...+..... .....+.+.+.++..+.++ |+||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 3334445554443321 2345667778888888777 999999999998877653 68999999999999
Q ss_pred hhhh-CCCCcEEEcCC-CCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcCCCHHHHHHHHHH
Q 002299 336 VLSN-CRVDQIYDVKE-LVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSGRRKEEWKSAMRK 413 (940)
Q Consensus 336 ~~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~~ 413 (940)
++.. ++....+.+++ |+++||++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.++ .+|+..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8854 45567899996 99999999999988443 334556799999999999999999999998765 468888888
Q ss_pred HhcCCC-----------chHHHHHHhhhcCCChhhHHHHHhhhcccCCC--CHHHHHHHHHHCCCCchhchHHHHhccce
Q 002299 414 LEIVPH-----------MEIQEVLKISYDGLDGHEQDIFLDIACFLVGE--DRDQVIRFLDSCGFFPEIGLRVLVDKSLI 480 (940)
Q Consensus 414 l~~~~~-----------~~i~~~l~~s~~~L~~~~k~~~l~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sll 480 (940)
+..... ..+..+|.+||+.|++++|.||++||+||.++ +.+.+..+|..++...+..+++|+++||+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 764331 34889999999999999999999999999885 78889999987766778889999999999
Q ss_pred EEe-CC---eeeehHHHHHHHHHHHhhc
Q 002299 481 TID-YN---TIKMHDLLRDMGREIVRKE 504 (940)
Q Consensus 481 ~~~-~~---~~~mH~lv~~~~~~~~~~~ 504 (940)
+.. .+ +|+||++||+++++.+.++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 987 33 4999999999999986654
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.3e-35 Score=338.63 Aligned_cols=278 Identities=15% Similarity=0.101 Sum_probs=213.4
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHH--Hhhccccc-eEEEecchhhhccCCHHHHHHHH
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFT--KMSKHFEG-SYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
+..|||+.++++|.++|... ++.++|+|+||||+||||||+++|+ +++.+|+. ++|+... .......+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs----~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK----NCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECC----CSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeC----CCCCHHHHHHHH
Confidence 44599999999999998753 3478999999999999999999997 57889997 7787652 233444554444
Q ss_pred HHH---hhCCCC---C-----CCchhhhHHHHHhhh---cCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCCh
Q 002299 269 LST---LLDDRN---V-----KNFPYIILNFQSKRF---SCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDK 334 (940)
Q Consensus 269 ~~~---~~~~~~---~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 334 (940)
... +..... . ....+...+.+++.+ .++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 442 211100 0 112334455666655 6799999999999998888752 689999999999
Q ss_pred hhhhhCCCCcEEEcC------CCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcCC--CHHH
Q 002299 335 QVLSNCRVDQIYDVK------ELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSGR--RKEE 406 (940)
Q Consensus 335 ~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~--~~~~ 406 (940)
.++..+.....|.|+ +|+.+||++||.++. +.. ..++..++ |+|+||||+++|+.|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 887543333356666 999999999999984 322 22334443 999999999999999977 6788
Q ss_pred HHHHHHHHhcCCCchHHHHHHhhhcCCChhh-HHHHHhhhcccCCC--CHHHHHHHHHHCCC-CchhchHHHHhccceEE
Q 002299 407 WKSAMRKLEIVPHMEIQEVLKISYDGLDGHE-QDIFLDIACFLVGE--DRDQVIRFLDSCGF-FPEIGLRVLVDKSLITI 482 (940)
Q Consensus 407 w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~-k~~~l~la~f~~~~--~~~~l~~~~~~~~~-~~~~~l~~L~~~sll~~ 482 (940)
|+.. ....+..+++.||+.|++++ |.||+++|+||.++ +.+.+..+|.++|. .++..+++|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8763 34679999999999999999 99999999999876 56778899988753 35678999999999998
Q ss_pred e--CCeeeehHHHHHHH
Q 002299 483 D--YNTIKMHDLLRDMG 497 (940)
Q Consensus 483 ~--~~~~~mH~lv~~~~ 497 (940)
+ ..+|+|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 56899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.1e-33 Score=327.54 Aligned_cols=301 Identities=21% Similarity=0.223 Sum_probs=228.4
Q ss_pred ccCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh---hcccc-ceEEEecchhhhccCCH
Q 002299 186 TFQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM---SKHFE-GSYFAHNVREAQETGGL 261 (940)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 261 (940)
..|..+..||||+.++++|.+++....++.++|+|+||||+||||||.+++++. +.+|+ .++|+..... .. ..+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~-~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DK-SGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CH-HHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-ch-HHH
Confidence 345667889999999999999997655678999999999999999999999743 67895 6778764321 11 111
Q ss_pred HHHHHHHHHHhhCC----CCCCCchhhhHHHHHhhhcC--CceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChh
Q 002299 262 AHLRQQLLSTLLDD----RNVKNFPYIILNFQSKRFSC--KKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQ 335 (940)
Q Consensus 262 ~~l~~~l~~~~~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 335 (940)
.....++...+... .....+.+.....+...+.+ +++||||||+|+..+++.+ ++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 11122223333211 11234455666777777765 7899999999998766542 67899999999998
Q ss_pred hhhhCCCCcEEEc---CCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcCCCHHHHHHHHH
Q 002299 336 VLSNCRVDQIYDV---KELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSGRRKEEWKSAMR 412 (940)
Q Consensus 336 ~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~ 412 (940)
++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++.+. .+|...++
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 876543 344555 5899999999999998642 223346789999999999999999999998663 36888888
Q ss_pred HHhcCC-----------CchHHHHHHhhhcCCChhhHHHHHhhhcccCCC--CHHHHHHHHHHCCCCchhchHHHHhccc
Q 002299 413 KLEIVP-----------HMEIQEVLKISYDGLDGHEQDIFLDIACFLVGE--DRDQVIRFLDSCGFFPEIGLRVLVDKSL 479 (940)
Q Consensus 413 ~l~~~~-----------~~~i~~~l~~s~~~L~~~~k~~~l~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sl 479 (940)
.+.... ...+..++..||+.|+++.|.||+++|+||.+. +.+.+..+|..++...+..+..|+++||
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 776432 246889999999999999999999999999865 6677888887654446678999999999
Q ss_pred eEEe--C--CeeeehHHHHHHHHHH
Q 002299 480 ITID--Y--NTIKMHDLLRDMGREI 500 (940)
Q Consensus 480 l~~~--~--~~~~mH~lv~~~~~~~ 500 (940)
+... + ..|+||+++|+++++.
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHH
T ss_pred eEEecCCCccEEEEcHHHHHHHHhh
Confidence 9865 2 3799999999999887
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=6.4e-31 Score=319.72 Aligned_cols=358 Identities=18% Similarity=0.140 Sum_probs=263.2
Q ss_pred cccCCcceEEeChhhhccCCCcceEEEecCCCcccccCCCC---CCCCcceEEeCCCCCc-hh--hhhh--hcccccccc
Q 002299 540 DMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHFEGA---PFTDVRYFEWHKSPLK-SL--NIRA--ENLVSLILP 611 (940)
Q Consensus 540 ~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~---~~~~L~~L~l~~~~l~-~l--~l~~--~~L~~l~l~ 611 (940)
+++.+. .....+..|..+++|+.|++++|... ..+|.. ..++|++|++++|.+. .+ .+.. .+|+.+++.
T Consensus 300 ~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~--~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 300 DLSGNH-FYGAVPPFFGSCSLLESLALSSNNFS--GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp ECCSSE-EEECCCGGGGGCTTCCEEECCSSEEE--EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred ECcCCc-CCCccchHHhcCCCccEEECCCCccc--CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 334433 33456777888888888888887321 144532 2378888888888775 22 1211 145555554
Q ss_pred c-----cccccccc--cCCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCc
Q 002299 612 G-----RLWDDVQN--LVNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLR 683 (940)
Q Consensus 612 ~-----~l~~~~~~--l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 683 (940)
+ .+|..+.. +++|++|++++|.+...+|. ++.+++|++|++++|......|..+..+++|+.|++++|....
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence 4 45555655 77899999999887767774 8889999999999988777888889999999999999998877
Q ss_pred ccCCcc-CCCCCCEEEecCCCCCCcCCCCCcC--CccEEecCCCCCc-ccCccccccCCCcEEEecCCCCCcccccccCC
Q 002299 684 SLPHTI-RSESLFELRLSGCTSLKRFPKISSC--FLKDLDLESCGIE-ELPSSIECLYNLRSIDLLNCTRLEYIASSIFT 759 (940)
Q Consensus 684 ~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~--~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 759 (940)
.+|..+ .+++|++|++++|.....+|..... +|++|++++|.++ .+|.+++.+++|+.|++++|.+.+.+|..+..
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 777766 5889999999998877666654433 7999999999988 78888999999999999999888888988999
Q ss_pred CCCCcEEEecCCCCCCcCCCCCcch-------------------------------------------hcc---------
Q 002299 760 LKSLESIRISKCSNLRKFPEIPSCI-------------------------------------------IDE--------- 787 (940)
Q Consensus 760 l~~L~~L~l~~~~~~~~~~~~~~~~-------------------------------------------~~~--------- 787 (940)
+++|+.|++++|.....+|...... ..+
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 9999999999987665544211000 000
Q ss_pred ----------ccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc
Q 002299 788 ----------AGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 788 ----------~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
....+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~--- 693 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD--- 693 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE---
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc---
Confidence 0001356788888888887788888888888888888888888888888888888888888888774
Q ss_pred hhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 858 ESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 858 ~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
+.+|..+.++++|+.|+|++|++.+.+|.. ..+.++....+.||+.
T Consensus 694 -------g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 694 -------GRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPG 739 (768)
T ss_dssp -------ECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTE
T ss_pred -------CcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCch
Confidence 334556667888888888888888887763 3455666667777753
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.2e-30 Score=317.42 Aligned_cols=342 Identities=20% Similarity=0.154 Sum_probs=283.9
Q ss_pred eChhhhccCCCcceEEEecCCCcccccCCCCCC--CCcceEEeCCCCCc-hhh---hh-hhcccccccc-----cccccc
Q 002299 550 INPYTFSMMPELRFLKFYGQNKCMITHFEGAPF--TDVRYFEWHKSPLK-SLN---IR-AENLVSLILP-----GRLWDD 617 (940)
Q Consensus 550 ~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~--~~L~~L~l~~~~l~-~l~---l~-~~~L~~l~l~-----~~l~~~ 617 (940)
++...+..+++|+.|++++|.... ..|..+. ++|++|++++|.+. .+. +. ..+|+.+++. +.+|..
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNHFYG--AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSEEEE--CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred cCHHHHhhcCcCCEEECcCCcCCC--ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 344444446999999999984321 3444333 89999999999886 442 21 2445555554 477888
Q ss_pred ccccC-CCceeeCCCCCCCCcCCC-ccc--CCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCC
Q 002299 618 VQNLV-NLKEIDLSDSKQLTKLPD-LSL--ARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSE 692 (940)
Q Consensus 618 ~~~l~-~L~~L~L~~~~~~~~~~~-l~~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~ 692 (940)
+.++. +|++|++++|.+...+|. +.. +++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 98988 999999999988766664 555 8899999999998888999999999999999999998877888766 589
Q ss_pred CCCEEEecCCCCCCcCCCCCcC--CccEEecCCCCCc-ccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEec
Q 002299 693 SLFELRLSGCTSLKRFPKISSC--FLKDLDLESCGIE-ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRIS 769 (940)
Q Consensus 693 ~L~~L~l~~~~~l~~~~~~~~~--~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 769 (940)
+|+.|++++|.....+|..... +|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 9999999999877777764433 7999999999999 788889999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccC--------------------------------------
Q 002299 770 KCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPS-------------------------------------- 811 (940)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-------------------------------------- 811 (940)
+|..... +|..+..+ ++|+.|++++|++...+|.
T Consensus 523 ~N~l~~~---~p~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 523 NNSFSGN---IPAELGDC-----RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp SSCCEEE---CCGGGGGC-----TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCcccCc---CCHHHcCC-----CCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 9977644 44555555 8999999999977644443
Q ss_pred --------------------------------ccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchh
Q 002299 812 --------------------------------SLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPES 859 (940)
Q Consensus 812 --------------------------------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~ 859 (940)
.+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.++
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~----- 669 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS----- 669 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-----
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-----
Confidence 3445688999999999999999999999999999999999985
Q ss_pred HHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 860 LGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 860 l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
+.+|..++++++|+.|+|++|++.+.+|..+.++++|+.|++++|.+
T Consensus 670 -----g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 670 -----GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp -----SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred -----CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 33456677899999999999999999999999999999999999965
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.3e-29 Score=297.98 Aligned_cols=363 Identities=19% Similarity=0.123 Sum_probs=240.4
Q ss_pred eccccCCcceEEeChhhhccCCCcceEEEecCCCcccccC-CCCC--CCCcceEEeCCCCCchh---hh-hhhccccccc
Q 002299 538 SLDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHF-EGAP--FTDVRYFEWHKSPLKSL---NI-RAENLVSLIL 610 (940)
Q Consensus 538 ~l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l-~~~~--~~~L~~L~l~~~~l~~l---~l-~~~~L~~l~l 610 (940)
.+|++.+. ...+.+..|.++++|++|++++|.. ..+ |..+ ..+|++|++++|.+..+ .+ ...+|+.+++
T Consensus 37 ~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 37 CLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQI---YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp EEECTTCC-CSEECTTTSTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred EEEccCCc-cCcCChhHhccCccceEEECCCCcc---ceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 34444443 4467788899999999999998843 333 3323 28899999999988765 11 2245555555
Q ss_pred cc-----cccccccccCCCceeeCCCCCCCC-cCCCcccCCCccEEeccCCCCCccccccccCCCccc--EEEecCCCCC
Q 002299 611 PG-----RLWDDVQNLVNLKEIDLSDSKQLT-KLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLA--FLYLVSCESL 682 (940)
Q Consensus 611 ~~-----~l~~~~~~l~~L~~L~L~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~ 682 (940)
.+ ..+..+.++++|++|++++|.+.. ..|.+..+++|++|++++|......+..+..+++|+ .|++++|...
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 54 335668899999999999998766 346677799999999999977777777888899998 8899998776
Q ss_pred cccCCccCCCC----------------------------------------------------CCEEEecCCCCCCcCCC
Q 002299 683 RSLPHTIRSES----------------------------------------------------LFELRLSGCTSLKRFPK 710 (940)
Q Consensus 683 ~~l~~~~~l~~----------------------------------------------------L~~L~l~~~~~l~~~~~ 710 (940)
...|..+...+ |+.|++++|......+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 66665554444 44444444433222222
Q ss_pred CCc--CCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccc
Q 002299 711 ISS--CFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEA 788 (940)
Q Consensus 711 ~~~--~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 788 (940)
.+. .+|++|++++|.++.+|..+..+++|+.|++++|.+....|..+..+++|++|++++|.....++. ..+..+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~l- 349 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT--GCLENL- 349 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS--STTTTC-
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch--hhhhcc-
Confidence 122 268888888888888888888888888888888887777777788888888888888765433332 112223
Q ss_pred cccCCCceEEEcCCCCCCccc--cCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCch-h-HHHh-
Q 002299 789 GIKRQALSKLELNNCSRLESF--PSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPE-S-LGQL- 863 (940)
Q Consensus 789 ~~~~~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~-l~~l- 863 (940)
++|+.|++++|.+.... +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+...+. . +..+
T Consensus 350 ----~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 350 ----ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp ----TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred ----CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 66777777776665443 5556666777777777776665556666666667777776666553321 1 1110
Q ss_pred ------------hhccCccccCCCCCCEEeccCCCCCcc---cCCCcCCchhhhhhhccCCcc
Q 002299 864 ------------LESLPSSLYKSKCLQDSYLDDCPNLHR---LPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 864 ------------~~~lp~~~~~l~~L~~L~L~~n~~~~~---~p~~~~~l~~L~~L~l~~n~~ 911 (940)
....|..+..+++|+.|+|++|++.+. .+..+..+++|+.|++++|.+
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 112344566677777777777766542 224566777777777777643
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.1e-29 Score=305.76 Aligned_cols=320 Identities=18% Similarity=0.176 Sum_probs=157.5
Q ss_pred CCcceEEeCCCCCchhhhh--hhcccccccccccccccc--ccCCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCC-
Q 002299 583 TDVRYFEWHKSPLKSLNIR--AENLVSLILPGRLWDDVQ--NLVNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCS- 656 (940)
Q Consensus 583 ~~L~~L~l~~~~l~~l~l~--~~~L~~l~l~~~l~~~~~--~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~- 656 (940)
++|++|++++|.+..-.+. ........+.+.+|..++ ++++|++|+|++|.+...+|. |..+++|++|+|++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 7788888888877761000 000000011112444444 555555555555555555553 5555555555555554
Q ss_pred CCc-cccccccCCC-------cccEEEecCCCCCcccCC--cc-CCCCCCEEEecCCCCCCcCCCCCcC-CccEEecCCC
Q 002299 657 SLM-ETHSSIQYLN-------KLAFLYLVSCESLRSLPH--TI-RSESLFELRLSGCTSLKRFPKISSC-FLKDLDLESC 724 (940)
Q Consensus 657 ~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~l~~--~~-~l~~L~~L~l~~~~~l~~~~~~~~~-~L~~L~L~~~ 724 (940)
+.. .+|..++.++ +|+.|++++|... .+|. .+ .+++|+.|++++|... .+|.+... +|+.|+|++|
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCC
Confidence 333 3444443333 5555555555443 4454 22 4555555555555433 44422111 4555555555
Q ss_pred CCcccCccccccCC-CcEEEecCCCCCcccccccCCCCC--CcEEEecCCCCCCcCCCCCcchhccc-------------
Q 002299 725 GIEELPSSIECLYN-LRSIDLLNCTRLEYIASSIFTLKS--LESIRISKCSNLRKFPEIPSCIIDEA------------- 788 (940)
Q Consensus 725 ~i~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~~~------------- 788 (940)
.++.+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.....+|.++..+..+.
T Consensus 606 ~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 606 QIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp CCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred ccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 55555555555555 555555555443 44444443332 55555555544433333321111100
Q ss_pred --------cccCCCceEEEcCCCCCCccccCccCC--------CCCccEEeeeCCCCCCCCCccCC--CCCCCCEEEccC
Q 002299 789 --------GIKRQALSKLELNNCSRLESFPSSLCM--------FESLASLKIIDCPRLDGLPDELG--NLKALEELTVEG 850 (940)
Q Consensus 789 --------~~~~~~L~~L~L~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~L~~ 850 (940)
...+++|+.|+|++|.+. .+|..+.. +++|+.|+|++|.+. .+|..+. .+++|+.|+|++
T Consensus 685 L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 685 IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCC
Confidence 001256666777666554 44443322 226777777777666 4666665 677777777777
Q ss_pred CCCccCchhHHHh-------------------hhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCc
Q 002299 851 TAMREVPESLGQL-------------------LESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKC 910 (940)
Q Consensus 851 n~l~~lp~~l~~l-------------------~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 910 (940)
|++..+|..+..+ .+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|++++|+
T Consensus 763 N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 763 NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 7776666544322 123344444455555555555544 34444332 345555555544
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.4e-30 Score=304.95 Aligned_cols=320 Identities=14% Similarity=0.122 Sum_probs=167.3
Q ss_pred CCCCCC--CCcceEEeCCCCCch------------------h--hh---hhhcccccccc-----ccccccccccCCCce
Q 002299 577 FEGAPF--TDVRYFEWHKSPLKS------------------L--NI---RAENLVSLILP-----GRLWDDVQNLVNLKE 626 (940)
Q Consensus 577 l~~~~~--~~L~~L~l~~~~l~~------------------l--~l---~~~~L~~l~l~-----~~l~~~~~~l~~L~~ 626 (940)
+|..+. ++|++|++++|.+.. + .+ ...+|+.+++. +.+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 444443 788888888888776 3 11 11222222222 234444445555555
Q ss_pred eeCCCCC-CCC-cCCC-cccC------CCccEEeccCCCCCccccc--cccCCCcccEEEecCCCCCcccCCccCCCCCC
Q 002299 627 IDLSDSK-QLT-KLPD-LSLA------RNLESLDLWGCSSLMETHS--SIQYLNKLAFLYLVSCESLRSLPHTIRSESLF 695 (940)
Q Consensus 627 L~L~~~~-~~~-~~~~-l~~l------~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~ 695 (940)
|+|++|+ +.. .+|. ++.+ ++|++|++++|... .+|. .++.+++|++|++++|...+.+|....+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 5555554 332 2332 3332 45555555554333 4444 45555555555555554433444222344555
Q ss_pred EEEecCCCCCCcCCCCCcC--C-ccEEecCCCCCcccCccccccC--CCcEEEecCCCCCcccccccC-------CCCCC
Q 002299 696 ELRLSGCTSLKRFPKISSC--F-LKDLDLESCGIEELPSSIECLY--NLRSIDLLNCTRLEYIASSIF-------TLKSL 763 (940)
Q Consensus 696 ~L~l~~~~~l~~~~~~~~~--~-L~~L~L~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~~~~~l~-------~l~~L 763 (940)
+|++++|... .+|..... + |++|++++|.++.+|..+..++ +|+.|++++|.+.+..|..+. .+++|
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 5555554322 33332221 3 5555555555555555444332 555555555555555554444 44555
Q ss_pred cEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCC-C-------CCccEEeeeCCCCCCCCCc
Q 002299 764 ESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCM-F-------ESLASLKIIDCPRLDGLPD 835 (940)
Q Consensus 764 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-l-------~~L~~L~l~~~~~~~~~~~ 835 (940)
+.|++++|... .+|..+.. .+++|+.|++++|.+. .+|..... + ++|+.|++++|.+. .+|.
T Consensus 436 ~~L~Ls~N~l~----~lp~~~~~----~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 436 SSINLSNNQIS----KFPKELFS----TGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp EEEECCSSCCC----SCCTHHHH----TTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred CEEECcCCccC----cCCHHHHc----cCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 55666554432 22222211 1267777777777665 44443322 2 27888888888776 4676
Q ss_pred cCC--CCCCCCEEEccCCCCccCchhHHHh-------------------hhccCccccCCCCCCEEeccCCCCCcccCCC
Q 002299 836 ELG--NLKALEELTVEGTAMREVPESLGQL-------------------LESLPSSLYKSKCLQDSYLDDCPNLHRLPDE 894 (940)
Q Consensus 836 ~l~--~l~~L~~L~L~~n~l~~lp~~l~~l-------------------~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~ 894 (940)
.+. .+++|+.|+|++|+++.+|..+..+ .+.+|..+.++++|+.|+|++|++ +.+|..
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 665 7788888888888877777655432 234555555666666666666655 445554
Q ss_pred cCCchhhhhhhccCCcc
Q 002299 895 LGSLEALKRLYAEGKCS 911 (940)
Q Consensus 895 ~~~l~~L~~L~l~~n~~ 911 (940)
+. ++|+.|++++|++
T Consensus 585 ~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 585 IT--PNISVLDIKDNPN 599 (636)
T ss_dssp CC--TTCCEEECCSCTT
T ss_pred Hh--CcCCEEECcCCCC
Confidence 43 5666666666644
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=6.9e-29 Score=295.24 Aligned_cols=276 Identities=18% Similarity=0.104 Sum_probs=152.6
Q ss_pred CCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEec
Q 002299 623 NLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLS 700 (940)
Q Consensus 623 ~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~ 700 (940)
+|+.|++++|.+....+. |..+++|++|++++|. +..+|..+..+++|++|++++|......|..+ .+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 344444444443333333 5555666666666653 33555556666666666666665444434333 35566666666
Q ss_pred CCCCCCcCCCC-C--cCCccEEecCCCCCccc---CccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCC
Q 002299 701 GCTSLKRFPKI-S--SCFLKDLDLESCGIEEL---PSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNL 774 (940)
Q Consensus 701 ~~~~l~~~~~~-~--~~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 774 (940)
+|.....++.. . ..+|++|++++|.++.+ |..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|...
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 55443333321 1 11455566665555543 334555555555555555554444555555555555555554432
Q ss_pred CcCCC----------------------CCcchhccccccCCCceEEEcCCCCCCcc---ccCccCCCCCccEEeeeCCCC
Q 002299 775 RKFPE----------------------IPSCIIDEAGIKRQALSKLELNNCSRLES---FPSSLCMFESLASLKIIDCPR 829 (940)
Q Consensus 775 ~~~~~----------------------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~ 829 (940)
...+. .+..+..+ ++|++|++++|.+.+. .+..+..+++|+.|++++|.+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-----PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-----TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCC-----CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 21111 11112222 5555555555554331 113345555566666666655
Q ss_pred CCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCC
Q 002299 830 LDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 830 ~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n 909 (940)
.+..|..+..+++|++|+|++|+++.+ .|..+.++++| .|+|++|++.+..|..+..+++|+.|++++|
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSS----------SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGG----------GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CccChhhhccccCCCEEECCCCccCcC----------ChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 554555556666666666666655433 34567788888 8999999888877777888899999999999
Q ss_pred ccCCCc
Q 002299 910 CSDRST 915 (940)
Q Consensus 910 ~~~~~~ 915 (940)
++.+.+
T Consensus 558 ~~~c~c 563 (606)
T 3t6q_A 558 PLDCTC 563 (606)
T ss_dssp CEECSG
T ss_pred CccccC
Confidence 877654
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.8e-29 Score=297.42 Aligned_cols=229 Identities=15% Similarity=0.095 Sum_probs=128.3
Q ss_pred CCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCccc---CccccccCCCcEEEe
Q 002299 668 LNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEEL---PSSIECLYNLRSIDL 744 (940)
Q Consensus 668 l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l 744 (940)
+++|+.|++++|.. +.+|.. .+++|++|++++|.....++.....+|++|++++|.++.+ |..+..+++|+.|++
T Consensus 306 ~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp TCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred cccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence 34455555555543 444433 5555666666655433333222223466666666666544 444555566666666
Q ss_pred cCCCCCcccccccCCCCCCcEEEecCCCCCCcCC----------------------CCCcchhccccccCCCceEEEcCC
Q 002299 745 LNCTRLEYIASSIFTLKSLESIRISKCSNLRKFP----------------------EIPSCIIDEAGIKRQALSKLELNN 802 (940)
Q Consensus 745 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~L~~L~L~~ 802 (940)
++|.+.. +|..+..+++|+.|++++|......+ ..|..+..+ ++|++|++++
T Consensus 384 ~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~ 457 (606)
T 3vq2_A 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-----TSLNTLKMAG 457 (606)
T ss_dssp CSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-----TTCCEEECTT
T ss_pred CCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-----CCCCEEECCC
Confidence 5554322 33445555555555555543332211 011122222 5555566655
Q ss_pred CCCCc-cccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEe
Q 002299 803 CSRLE-SFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSY 881 (940)
Q Consensus 803 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~ 881 (940)
|.+.. ..|..+..+++|+.|++++|.+.+..|..+..+++|++|+|++|+++.+ .|..+.++++|+.|+
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL----------DSSHYNQLYSLSTLD 527 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE----------EGGGTTTCTTCCEEE
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc----------CHHHccCCCcCCEEE
Confidence 55444 2455555666666666666665555555556666666666666655443 245677888899999
Q ss_pred ccCCCCCcccCCCcCCch-hhhhhhccCCccCCCc
Q 002299 882 LDDCPNLHRLPDELGSLE-ALKRLYAEGKCSDRST 915 (940)
Q Consensus 882 L~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~ 915 (940)
|++|++. .+|..+..++ +|+.|++++|++.+.+
T Consensus 528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 9988866 5677788886 5899999998876643
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=283.42 Aligned_cols=312 Identities=17% Similarity=0.135 Sum_probs=235.8
Q ss_pred ccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCCC-cccCCCccEEe
Q 002299 573 MITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPD-LSLARNLESLD 651 (940)
Q Consensus 573 ~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~ 651 (940)
.+..+|......+++|++++|.++.+ .+..+.++++|++|+|++|.+....|. |..+++|++|+
T Consensus 22 ~l~~ip~~~~~~l~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 22 RFVAVPEGIPTETRLLDLGKNRIKTL---------------NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCEE---------------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CcCcCCCCCCCCCcEEECCCCccceE---------------CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 45666776667888888888877654 245577788888888888876666564 88888888888
Q ss_pred ccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCCc--CCccEEecCCCCCcc
Q 002299 652 LWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKISS--CFLKDLDLESCGIEE 728 (940)
Q Consensus 652 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~--~~L~~L~L~~~~i~~ 728 (940)
|++|......+..+.++++|++|++++|......+..+ .+++|++|++++|......+..+. .+|++|++++|.++.
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 88876554444557788888888888887666655555 578888888888764433332222 268889999888888
Q ss_pred cCcc-ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCc
Q 002299 729 LPSS-IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLE 807 (940)
Q Consensus 729 lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 807 (940)
+|.. +..+++|+.|++++|.+....+..+..+++|+.|++++|..+..++.. .... .+|++|++++|.+..
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~-----~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN---CLYG-----LNLTSLSITHCNLTA 238 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT---TTTT-----CCCSEEEEESSCCCS
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc---cccC-----ccccEEECcCCcccc
Confidence 8764 788899999999998887777777888999999999988776544432 2222 589999999987665
Q ss_pred cccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCC
Q 002299 808 SFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPN 887 (940)
Q Consensus 808 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~ 887 (940)
..+..+..+++|+.|+|++|.+.+..+..+..+++|++|+|++|.+..++ |..|.++++|+.|+|++|.+
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE----------PYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC----------TTTBTTCTTCCEEECCSSCC
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC----------HHHhcCcccCCEEECCCCcC
Confidence 44456788899999999999888766777888999999999999887654 45677889999999999988
Q ss_pred CcccCCCcCCchhhhhhhccCCccCCCccc
Q 002299 888 LHRLPDELGSLEALKRLYAEGKCSDRSTLV 917 (940)
Q Consensus 888 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~l~ 917 (940)
....+..+..+++|+.|++++|++.+++-.
T Consensus 309 ~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 309 TTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp SCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 776666788899999999999987665433
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=5.7e-29 Score=295.94 Aligned_cols=226 Identities=16% Similarity=0.085 Sum_probs=150.3
Q ss_pred CCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCC-------------------
Q 002299 645 RNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSL------------------- 705 (940)
Q Consensus 645 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l------------------- 705 (940)
++|++|++++|.. ..+| .+ .+++|+.|++++|...... ....+++|++|++++|...
T Consensus 307 ~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 307 FKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred ccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 3555555555544 4455 33 6777777777777444433 2224555555555555321
Q ss_pred ------CcCCCCCc--CCccEEecCCCCCcccCc--cccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCC
Q 002299 706 ------KRFPKISS--CFLKDLDLESCGIEELPS--SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLR 775 (940)
Q Consensus 706 ------~~~~~~~~--~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 775 (940)
..+|.... .+|++|++++|.+..+++ .+..+++|+.|++++|.+.+..|..+..+++|++|++++|....
T Consensus 383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 11121111 145666666665554433 45566666666666666655566666666667777776664432
Q ss_pred cCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCcc
Q 002299 776 KFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMRE 855 (940)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 855 (940)
.. .|..+..+ ++|+.|++++|.+....|..+..+++|++|++++|++.+..|..+..+++|++|+|++|+++.
T Consensus 463 ~~--~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 463 NT--LSNVFANT-----TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp GE--ECSCCTTC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred cc--hHHhhccC-----CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 10 12233333 899999999999988888899999999999999999998889999999999999999999988
Q ss_pred CchhHHHhhhccCccccCCC-CCCEEeccCCCCCcccC
Q 002299 856 VPESLGQLLESLPSSLYKSK-CLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 856 lp~~l~~l~~~lp~~~~~l~-~L~~L~L~~n~~~~~~p 892 (940)
+|.. +..++ +|+.|++++|++....+
T Consensus 536 ~p~~-----------~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 536 SKGI-----------LQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EESC-----------GGGSCTTCCEEECCSCCCCCSST
T ss_pred cCHh-----------HhhhcccCcEEEccCCCcccCCc
Confidence 7753 44566 69999999999875433
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=9.5e-29 Score=283.11 Aligned_cols=334 Identities=16% Similarity=0.107 Sum_probs=235.3
Q ss_pred eEEeChhhhccCCCcceEEEecCCCcccccCCCCC---CCCcceEEeCCCCCchhhhhhhccccccccccccccccccCC
Q 002299 547 EIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAP---FTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVN 623 (940)
Q Consensus 547 ~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~---~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~ 623 (940)
...+.+..|.++++|++|++++|... ..++... .++|++|++++|.+..+ .|..+.++++
T Consensus 42 i~~~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~ 104 (455)
T 3v47_A 42 IAELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQL---------------ETGAFNGLAN 104 (455)
T ss_dssp CCEECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEE---------------CTTTTTTCTT
T ss_pred cCcCChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCcc---------------ChhhccCccc
Confidence 34556677777777777777776332 1222222 26777777777776543 3556777888
Q ss_pred CceeeCCCCCCCCcCC-C--cccCCCccEEeccCCCCCcccccc-ccCCCcccEEEecCCCCCcccCCcc---CCCCCCE
Q 002299 624 LKEIDLSDSKQLTKLP-D--LSLARNLESLDLWGCSSLMETHSS-IQYLNKLAFLYLVSCESLRSLPHTI---RSESLFE 696 (940)
Q Consensus 624 L~~L~L~~~~~~~~~~-~--l~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~~---~l~~L~~ 696 (940)
|++|+|++|.+....+ . +..+++|++|++++|......|.. +..+++|++|++++|......+..+ ...+|+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 8888888886654333 2 777888888888887666655655 6778888888888876665555544 2367778
Q ss_pred EEecCCCCCCcCCCCC----------cCCccEEecCCCCCc-ccCcccccc---CCCcEEEecCCCCCcccc--------
Q 002299 697 LRLSGCTSLKRFPKIS----------SCFLKDLDLESCGIE-ELPSSIECL---YNLRSIDLLNCTRLEYIA-------- 754 (940)
Q Consensus 697 L~l~~~~~l~~~~~~~----------~~~L~~L~L~~~~i~-~lp~~~~~l---~~L~~L~l~~~~~~~~~~-------- 754 (940)
|++++|......+... ..+|++|++++|.++ ..|..+..+ ++|+.|++++|.......
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 8887776433222211 125888888888777 344444333 778888888775443211
Q ss_pred --cccC--CCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCC
Q 002299 755 --SSIF--TLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRL 830 (940)
Q Consensus 755 --~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 830 (940)
..+. ..++|+.|++++|......+. .+..+ ++|+.|++++|.+....|..+..+++|++|++++|.+.
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKS---VFSHF-----TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTT---TTTTC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccccccccCceEEEecCccccccchh---hcccC-----CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 1111 236899999998876644333 33333 88999999999888877888899999999999999988
Q ss_pred CCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCc
Q 002299 831 DGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKC 910 (940)
Q Consensus 831 ~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 910 (940)
+..|..+..+++|++|+|++|.++.++ |..+.++++|+.|+|++|++.+..+..+..+++|+.|++++|+
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALG----------DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEEC----------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcChhHhcCcccCCEEECCCCcccccC----------hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 777888899999999999999887653 4567789999999999999887666678999999999999998
Q ss_pred cCCCc
Q 002299 911 SDRST 915 (940)
Q Consensus 911 ~~~~~ 915 (940)
+.+..
T Consensus 407 l~~~~ 411 (455)
T 3v47_A 407 WDCSC 411 (455)
T ss_dssp BCCCT
T ss_pred cccCC
Confidence 86653
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.9e-29 Score=297.94 Aligned_cols=327 Identities=16% Similarity=0.118 Sum_probs=243.1
Q ss_pred hhhhccCCCcceEEEecCCCccc---------------ccCCCCCC----CCcceEEeCCCCCchh---------hhhhh
Q 002299 552 PYTFSMMPELRFLKFYGQNKCMI---------------THFEGAPF----TDVRYFEWHKSPLKSL---------NIRAE 603 (940)
Q Consensus 552 ~~~f~~~~~Lr~L~l~~~~~~~i---------------~~l~~~~~----~~L~~L~l~~~~l~~l---------~l~~~ 603 (940)
|..|.++++|++|++++|..... ..+|..+. ++|++|++++|.+... .+...
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 44577777777777777643220 00454432 6677777777654322 12222
Q ss_pred cccccc-ccc-ccccccccc------CCCceeeCCCCCCCCcCCC---cccCCCccEEeccCCCCCccccccccCCCccc
Q 002299 604 NLVSLI-LPG-RLWDDVQNL------VNLKEIDLSDSKQLTKLPD---LSLARNLESLDLWGCSSLMETHSSIQYLNKLA 672 (940)
Q Consensus 604 ~L~~l~-l~~-~l~~~~~~l------~~L~~L~L~~~~~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 672 (940)
++..+. +++ .+|..++++ ++|++|+|++|.+. .+|. ++.+++|++|++++|...+.+| .+..+++|+
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 333333 444 467777776 99999999999877 6665 9999999999999998777888 999999999
Q ss_pred EEEecCCCCCcccCCcc-CCCC-CCEEEecCCCCCCcCCCCCcC----CccEEecCCCCCcc-cCcccc-------ccCC
Q 002299 673 FLYLVSCESLRSLPHTI-RSES-LFELRLSGCTSLKRFPKISSC----FLKDLDLESCGIEE-LPSSIE-------CLYN 738 (940)
Q Consensus 673 ~L~l~~~~~~~~l~~~~-~l~~-L~~L~l~~~~~l~~~~~~~~~----~L~~L~L~~~~i~~-lp~~~~-------~l~~ 738 (940)
.|++++|... .+|..+ .+++ |++|++++|... .+|..... +|++|++++|.++. +|..+. .+++
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 9999999655 777666 5888 999999999855 67764432 59999999999984 566676 7889
Q ss_pred CcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccc---cccCCCceEEEcCCCCCCccccCccC-
Q 002299 739 LRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEA---GIKRQALSKLELNNCSRLESFPSSLC- 814 (940)
Q Consensus 739 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~~~~~~- 814 (940)
|+.|++++|.+....+..+..+++|+.|++++|... .+|.. ..... ...+++|+.|++++|.+. .+|..+.
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~---~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 509 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKN---SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSS---SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHH---HhccccccccccCCccEEECcCCcCC-ccChhhhh
Confidence 999999999887443334567999999999998765 44432 11110 001138999999999877 7888776
Q ss_pred -CCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccC------CCC-ccCchhHHHh------------hhccCccccCC
Q 002299 815 -MFESLASLKIIDCPRLDGLPDELGNLKALEELTVEG------TAM-REVPESLGQL------------LESLPSSLYKS 874 (940)
Q Consensus 815 -~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~------n~l-~~lp~~l~~l------------~~~lp~~~~~l 874 (940)
.+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |.+ ..+|..+..+ ++.+|..+.
T Consensus 510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-- 586 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-- 586 (636)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--
T ss_pred ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--
Confidence 99999999999999987 888899999999999954 444 3677777644 567888765
Q ss_pred CCCCEEeccCCCCCcc
Q 002299 875 KCLQDSYLDDCPNLHR 890 (940)
Q Consensus 875 ~~L~~L~L~~n~~~~~ 890 (940)
++|+.|+|++|++...
T Consensus 587 ~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 587 PNISVLDIKDNPNISI 602 (636)
T ss_dssp TTCCEEECCSCTTCEE
T ss_pred CcCCEEECcCCCCccc
Confidence 8999999999988753
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=288.76 Aligned_cols=183 Identities=18% Similarity=0.167 Sum_probs=144.0
Q ss_pred CccEEecCCCCCccc---CccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhcccccc
Q 002299 715 FLKDLDLESCGIEEL---PSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIK 791 (940)
Q Consensus 715 ~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 791 (940)
+|++|++++|.++.+ |..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|......+ +..+..+
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l---- 420 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE--FSVFLSL---- 420 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT--SCTTTTC----
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc--hhhhhcC----
Confidence 577777777777755 45577788888888888766554433 7788888888888876543222 1123333
Q ss_pred CCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCC-CCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcc
Q 002299 792 RQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRL-DGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSS 870 (940)
Q Consensus 792 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~ 870 (940)
++|++|++++|......|..+..+++|+.|++++|.+. +.+|..+..+++|++|+|++|+++.++ |..
T Consensus 421 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~----------~~~ 489 (570)
T 2z63_A 421 -RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS----------PTA 489 (570)
T ss_dssp -TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC----------TTT
T ss_pred -CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC----------hhh
Confidence 88999999999888888888889999999999999887 367888899999999999999886553 456
Q ss_pred ccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCCc
Q 002299 871 LYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRST 915 (940)
Q Consensus 871 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 915 (940)
+..+++|+.|+|++|++.+..|..+.++++|+.|++++|++.+..
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 778999999999999998877778999999999999999887653
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.8e-28 Score=291.43 Aligned_cols=327 Identities=14% Similarity=0.091 Sum_probs=255.3
Q ss_pred hccCCCcceEEEecCCCcccccCCCCCC--CCcceEEeCCCC-Cch--h--hhhh--------hccccccccc----ccc
Q 002299 555 FSMMPELRFLKFYGQNKCMITHFEGAPF--TDVRYFEWHKSP-LKS--L--NIRA--------ENLVSLILPG----RLW 615 (940)
Q Consensus 555 f~~~~~Lr~L~l~~~~~~~i~~l~~~~~--~~L~~L~l~~~~-l~~--l--~l~~--------~~L~~l~l~~----~l~ 615 (940)
|.++++|+.|++++|... ..+|..+. ++|++|++++|. +.. + .+.. .+|+.+++.+ .+|
T Consensus 487 f~~L~~L~~L~Ls~N~l~--~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip 564 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNM--TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564 (876)
T ss_dssp GGGCTTCCEEEEESCTTC--CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred hccCCCCCEEECcCCCCC--ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence 448999999999888432 34554443 789999999997 764 3 1221 2566666655 677
Q ss_pred c--cccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCc-ccEEEecCCCCCcccCCccC--
Q 002299 616 D--DVQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNK-LAFLYLVSCESLRSLPHTIR-- 690 (940)
Q Consensus 616 ~--~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~l~~~~~-- 690 (940)
. .+.++++|++|+|++|.+. .+|.|..+++|++|+|++|.+. .+|..+..+++ |+.|++++|... .+|..+.
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 7 8899999999999999876 7778999999999999998666 88888999998 999999999755 7777653
Q ss_pred -CCCCCEEEecCCCCCCcCCCCC-------cCCccEEecCCCCCcccCcccc-ccCCCcEEEecCCCCCcccccccCC--
Q 002299 691 -SESLFELRLSGCTSLKRFPKIS-------SCFLKDLDLESCGIEELPSSIE-CLYNLRSIDLLNCTRLEYIASSIFT-- 759 (940)
Q Consensus 691 -l~~L~~L~l~~~~~l~~~~~~~-------~~~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~-- 759 (940)
.++|+.|++++|.....+|... ..+|+.|++++|.++.+|..+. .+++|+.|+|++|.+. .+|..+..
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 2459999999998765555433 1269999999999999998764 7899999999998776 55554433
Q ss_pred ------CCCCcEEEecCCCCCCcCCCCCcchh--ccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeC-----
Q 002299 760 ------LKSLESIRISKCSNLRKFPEIPSCII--DEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIID----- 826 (940)
Q Consensus 760 ------l~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~----- 826 (940)
+++|+.|+|++|... .+|..+. .+ ++|+.|+|++|.+.. +|..+..+++|+.|+|++
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~----~lp~~l~~~~l-----~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT----SLSDDFRATTL-----PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC----CCCGGGSTTTC-----TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred cccccccCCccEEECCCCCCc----cchHHhhhccC-----CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 238999999998654 4455543 44 899999999998776 788899999999999977
Q ss_pred -CCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhh
Q 002299 827 -CPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLY 905 (940)
Q Consensus 827 -~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 905 (940)
|.+.+.+|..+..+++|+.|+|++|++..+|.. + .++|+.|+|++|++...-+..+.....+..+.
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-----------l--~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~ 857 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK-----------L--TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-----------C--CSSSCEEECCSCTTCEEECGGGHHHHHTTCCE
T ss_pred cccccccChHHHhcCCCCCEEECCCCCCCccCHh-----------h--cCCCCEEECCCCCCCccChHHccccccchhee
Confidence 777778999999999999999999998877743 2 26899999999999877666666666667777
Q ss_pred ccCCc
Q 002299 906 AEGKC 910 (940)
Q Consensus 906 l~~n~ 910 (940)
+.+|.
T Consensus 858 L~~n~ 862 (876)
T 4ecn_A 858 LLYDK 862 (876)
T ss_dssp EECCT
T ss_pred ecCCC
Confidence 77764
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.4e-28 Score=282.47 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=93.8
Q ss_pred ccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccC-cc
Q 002299 735 CLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPS-SL 813 (940)
Q Consensus 735 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~ 813 (940)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|... .++.+|..+..+ ++|++|++++|.+...+|. .+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l-----~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQM-----KSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTC-----TTCCEEECCSSCCBCCGGGCSC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHhhC-----CCCCEEECCCCcCCcccccchh
Confidence 4445555555555544444444555555555555554322 111122222222 5555555555554443333 24
Q ss_pred CCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCC
Q 002299 814 CMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPD 893 (940)
Q Consensus 814 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~ 893 (940)
..+++|+.|++++|.+.+..|..+. ++|+.|++++|+++. +|..+..+++|+.|+|++|++.. +|.
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-----------ip~~~~~l~~L~~L~L~~N~l~~-l~~ 461 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-----------IPKQVVKLEALQELNVASNQLKS-VPD 461 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-----------CCGGGGGCTTCCEEECCSSCCCC-CCT
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-----------cchhhhcCCCCCEEECCCCcCCc-cCH
Confidence 4555555555555555444443332 455555555555544 45555679999999999998874 666
Q ss_pred C-cCCchhhhhhhccCCccCCCc
Q 002299 894 E-LGSLEALKRLYAEGKCSDRST 915 (940)
Q Consensus 894 ~-~~~l~~L~~L~l~~n~~~~~~ 915 (940)
. +..+++|+.|++++|++.+.+
T Consensus 462 ~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHhccCCcccEEECcCCCCcccC
Confidence 4 899999999999999987754
No 21
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=7.5e-30 Score=240.84 Aligned_cols=120 Identities=20% Similarity=0.367 Sum_probs=111.3
Q ss_pred CCCCCcccEEEcCcccccCCcchHHHHHHHHhCCCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHH
Q 002299 16 DPRKNKYDVFLSFRGEDTRGNFTSHLFSALSKKHIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLD 94 (940)
Q Consensus 16 ~~~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~ 94 (940)
.++.++|||||||+|+| ++.|+.||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|+|++|+.|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 45678999999999999 56899999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEEcccCCcchhhcccchhHHHHHH
Q 002299 95 ELLKIIDCKNNSGQMVIPVFYRVDPSHVRKQIGSFGDSISNL 136 (940)
Q Consensus 95 El~~~~~~~~~~~~~v~pvf~~v~p~~v~~~~~~~~~~~~~~ 136 (940)
||..+++|...+++.|+||||+|+|++||+|.|.|++++...
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 999999998778889999999999999999999999886554
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.2e-27 Score=261.15 Aligned_cols=306 Identities=17% Similarity=0.183 Sum_probs=245.9
Q ss_pred hhccCCCcceEEEecCCCcccccCCCC-CCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCC
Q 002299 554 TFSMMPELRFLKFYGQNKCMITHFEGA-PFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDS 632 (940)
Q Consensus 554 ~f~~~~~Lr~L~l~~~~~~~i~~l~~~-~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~ 632 (940)
.+..+++|+.|+++++.. ..++.. ..++|++|++++|.+..+ +. +..+++|++|++++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i---~~~~~~~~~~~L~~L~l~~n~i~~~----------------~~-~~~l~~L~~L~L~~n 98 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKV---ASIQGIEYLTNLEYLNLNGNQITDI----------------SP-LSNLVKLTNLYIGTN 98 (347)
T ss_dssp CHHHHTTCSEEECCSSCC---CCCTTGGGCTTCCEEECCSSCCCCC----------------GG-GTTCTTCCEEECCSS
T ss_pred cchhcccccEEEEeCCcc---ccchhhhhcCCccEEEccCCccccc----------------hh-hhcCCcCCEEEccCC
Confidence 356788999999998843 444432 238999999999988765 33 788999999999999
Q ss_pred CCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCC
Q 002299 633 KQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKIS 712 (940)
Q Consensus 633 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~ 712 (940)
.+ ..++.+..+++|++|++++|.... ++. +..+++|+.|++++|.....++....+++|++|++++|......+...
T Consensus 99 ~i-~~~~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 175 (347)
T 4fmz_A 99 KI-TDISALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIAN 175 (347)
T ss_dssp CC-CCCGGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred cc-cCchHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhcc
Confidence 65 456779999999999999986544 443 889999999999999887777776689999999999987544333222
Q ss_pred cCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 713 SCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 713 ~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
..+|++|++++|.++.++. +..+++|+.|++++|.+....+ +..+++|++|++++|.... .+. +..+
T Consensus 176 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~----~~~-~~~l----- 242 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD----LSP-LANL----- 242 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----CGG-GTTC-----
T ss_pred CCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC----Ccc-hhcC-----
Confidence 3379999999999998887 8899999999999987766544 7889999999999986542 222 3333
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
++|++|++++|.+.. + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+...+. ..+.
T Consensus 243 ~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~----------~~l~ 308 (347)
T 4fmz_A 243 SQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDM----------EVIG 308 (347)
T ss_dssp TTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGH----------HHHH
T ss_pred CCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcCh----------hHhh
Confidence 899999999997665 3 358899999999999999876 4 458889999999999999876542 3456
Q ss_pred CCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 873 KSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
.+++|+.|+|++|++.+..| +..+++|+.|++++|.+
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 78999999999999887655 88999999999999975
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4.9e-28 Score=284.29 Aligned_cols=352 Identities=18% Similarity=0.167 Sum_probs=229.9
Q ss_pred ccccCCcceEEeChhhhccCCCcceEEEecCCCcccccCCCCC---CCCcceEEeCCCCCchhh---hh-hhcccccccc
Q 002299 539 LDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAP---FTDVRYFEWHKSPLKSLN---IR-AENLVSLILP 611 (940)
Q Consensus 539 l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~---~~~L~~L~l~~~~l~~l~---l~-~~~L~~l~l~ 611 (940)
++++.+. ...+.+..|.++++|++|++++|.. ..++... ..+|++|++++|.+..+. +. ..+|+.++++
T Consensus 31 L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 31 LDLSFNK-ITYIGHGDLRACANLQVLILKSSRI---NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp EECCSSC-CCEECSSTTSSCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred EECcCCc-cCccChhhhhcCCcccEEECCCCCc---CccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 3444443 4466678899999999999998843 4444322 288999999999887762 22 2455555555
Q ss_pred c------cccccccccCCCceeeCCCCCCCCcCC--CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCc
Q 002299 612 G------RLWDDVQNLVNLKEIDLSDSKQLTKLP--DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLR 683 (940)
Q Consensus 612 ~------~l~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 683 (940)
+ ..|..+.++++|++|++++|.....+| .+..+++|++|++++|......|..+..+++|++|++++|.. .
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~ 185 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-A 185 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-T
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-c
Confidence 4 235567778888888888887555554 377888888888888776666666666655555555544422 1
Q ss_pred ccCCcc--CCCCCCEEEecCCCCCCc------------------------------------------------------
Q 002299 684 SLPHTI--RSESLFELRLSGCTSLKR------------------------------------------------------ 707 (940)
Q Consensus 684 ~l~~~~--~l~~L~~L~l~~~~~l~~------------------------------------------------------ 707 (940)
.+|... .+++|++|++++|.....
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 111111 234444444444321110
Q ss_pred ---C------------------------CCC-----------CcCCccEEecCCCCCcccCccc-cccCCCcEEEecCCC
Q 002299 708 ---F------------------------PKI-----------SSCFLKDLDLESCGIEELPSSI-ECLYNLRSIDLLNCT 748 (940)
Q Consensus 708 ---~------------------------~~~-----------~~~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~ 748 (940)
+ +.. ...+|++|++++|.++.+|..+ ..+++|+.|++++|.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 0 000 0024777888888888888776 578999999999988
Q ss_pred CCcccc---cccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeee
Q 002299 749 RLEYIA---SSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKII 825 (940)
Q Consensus 749 ~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~ 825 (940)
+.+..| ..+..+++|+.|++++|.... ++..+..+..+ ++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l-----~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTL-----KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGC-----TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECT
T ss_pred cccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcC-----CCCCEEECCCCCCc-cCChhhcccccccEEECC
Confidence 877654 336778889999998875431 11111123333 78888888888655 677777778888888888
Q ss_pred CCCCCCCCCccC------------------CCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCC
Q 002299 826 DCPRLDGLPDEL------------------GNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPN 887 (940)
Q Consensus 826 ~~~~~~~~~~~l------------------~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~ 887 (940)
+|.+.. +|..+ ..+++|++|+|++|+++.+| . ...+++|+.|+|++|++
T Consensus 419 ~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip-----------~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 419 STGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLP-----------D-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp TSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-----------C-GGGCTTCCEEECCSSCC
T ss_pred CCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCC-----------C-cccCccCCEEecCCCcc
Confidence 887653 33222 24555555555555555444 3 24588999999999999
Q ss_pred CcccCCCcCCchhhhhhhccCCccCCCc
Q 002299 888 LHRLPDELGSLEALKRLYAEGKCSDRST 915 (940)
Q Consensus 888 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 915 (940)
.+..|..+..+++|+.|++++|++.+.+
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 8877878999999999999999886643
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.5e-27 Score=271.32 Aligned_cols=311 Identities=16% Similarity=0.118 Sum_probs=247.4
Q ss_pred EEeChhhhccCCCcceEEEecCCCcccccC-CCCCC--CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCC
Q 002299 548 IHINPYTFSMMPELRFLKFYGQNKCMITHF-EGAPF--TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNL 624 (940)
Q Consensus 548 ~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l-~~~~~--~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L 624 (940)
..+.+..|.++++|++|++++|.. ..+ |..+. .+|++|++++|.+...... ...+.++++|
T Consensus 68 ~~i~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~~~~l~~L 131 (455)
T 3v47_A 68 LVIRNNTFRGLSSLIILKLDYNQF---LQLETGAFNGLANLEVLTLTQCNLDGAVLS-------------GNFFKPLTSL 131 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTCTT---CEECTTTTTTCTTCCEEECTTSCCBTHHHH-------------SSTTTTCTTC
T ss_pred ceECcccccccccCCEEeCCCCcc---CccChhhccCcccCCEEeCCCCCCCccccC-------------cccccCcccC
Confidence 367788999999999999999854 333 33333 8999999999998753110 1237889999
Q ss_pred ceeeCCCCCCCCcCCC--cccCCCccEEeccCCCCCccccccccCC--CcccEEEecCCCCCcccCCc---------cCC
Q 002299 625 KEIDLSDSKQLTKLPD--LSLARNLESLDLWGCSSLMETHSSIQYL--NKLAFLYLVSCESLRSLPHT---------IRS 691 (940)
Q Consensus 625 ~~L~L~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~l~~~---------~~l 691 (940)
++|+|++|.+....|. +..+++|++|++++|......+..+..+ .+|+.|++++|......+.. ..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 9999999998877775 8899999999999998888778878766 78999999998655433221 246
Q ss_pred CCCCEEEecCCCCCCcCCCC-----CcCCccEEecCCCCCcccC-----------cccc--ccCCCcEEEecCCCCCccc
Q 002299 692 ESLFELRLSGCTSLKRFPKI-----SSCFLKDLDLESCGIEELP-----------SSIE--CLYNLRSIDLLNCTRLEYI 753 (940)
Q Consensus 692 ~~L~~L~l~~~~~l~~~~~~-----~~~~L~~L~L~~~~i~~lp-----------~~~~--~l~~L~~L~l~~~~~~~~~ 753 (940)
++|++|++++|......+.. ...+|+.|++++|.+.... ..+. ..++|+.|++++|.+.+..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 88999999999755433321 1236999999988554211 1122 2368999999999999988
Q ss_pred ccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCC
Q 002299 754 ASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGL 833 (940)
Q Consensus 754 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 833 (940)
|..+..+++|+.|++++|......+ ..+..+ ++|++|++++|.+....|..+..+++|++|++++|.+.+..
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDD---NAFWGL-----THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECT---TTTTTC-----TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred hhhcccCCCCCEEECCCCcccccCh---hHhcCc-----ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 9999999999999999987654333 334444 89999999999988777888999999999999999998877
Q ss_pred CccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC
Q 002299 834 PDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 834 ~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
|..+..+++|++|+|++|+++.+|. ..+..+++|+.|+|++|++....|
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~~~~----------~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKSVPD----------GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCT----------TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhccccccccEEECCCCccccCCH----------hHhccCCcccEEEccCCCcccCCC
Confidence 8899999999999999999988773 346789999999999999987766
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.3e-27 Score=277.36 Aligned_cols=162 Identities=13% Similarity=0.142 Sum_probs=118.9
Q ss_pred cccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccC-c
Q 002299 734 ECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPS-S 812 (940)
Q Consensus 734 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~ 812 (940)
..+++|+.|++++|.+.+..|..+.++++|+.|++++|.. +.++..|..+..+ ++|+.|++++|.+...+|. .
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l-----~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNM-----SSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTC-----TTCCEEECTTSCCBSCCSSCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc-CCcccchhhhcCC-----CCCCEEECCCCcCCCccChhh
Confidence 5667788888888777776777777788888888887643 3333333334444 7788888888877664554 4
Q ss_pred cCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC
Q 002299 813 LCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
+..+++|+.|++++|.+.+..|..+. ++|+.|+|++|+++.+| ..+..+++|+.|+|++|++.. +|
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip-----------~~~~~l~~L~~L~L~~N~l~~-l~ 489 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP-----------KDVTHLQALQELNVASNQLKS-VP 489 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC-----------TTTTSSCCCSEEECCSSCCCC-CC
T ss_pred hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC-----------hhhcCCCCCCEEECCCCCCCC-CC
Confidence 66778888888888887665554443 67888888888776665 445579999999999999875 66
Q ss_pred CC-cCCchhhhhhhccCCccCCCc
Q 002299 893 DE-LGSLEALKRLYAEGKCSDRST 915 (940)
Q Consensus 893 ~~-~~~l~~L~~L~l~~n~~~~~~ 915 (940)
.. +..+++|+.|++++|++.+++
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCH
T ss_pred HHHHhcCCCCCEEEecCCCcCCCc
Confidence 65 999999999999999988754
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=8.7e-27 Score=280.98 Aligned_cols=360 Identities=17% Similarity=0.093 Sum_probs=195.3
Q ss_pred EeChhhhccCCCcceEEEecCCCcccccCCCCCC---CCcceEEeCCCCCchhh---hh-hhccccccccc-----cccc
Q 002299 549 HINPYTFSMMPELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSPLKSLN---IR-AENLVSLILPG-----RLWD 616 (940)
Q Consensus 549 ~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~l~~l~---l~-~~~L~~l~l~~-----~l~~ 616 (940)
.+.+..|.++++|++|++++|. +..++...+ ++|++|++++|.+..+. +. ..+|+.+++.+ ..|.
T Consensus 39 ~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 115 (680)
T 1ziw_A 39 RLPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115 (680)
T ss_dssp CCCGGGGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred CcCHHHHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChh
Confidence 4555667777777777777663 233322222 66777777776666551 11 23344444433 2234
Q ss_pred cccccCCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCcccccccc--CCCcccEEEecCCCCCcccCCcc----
Q 002299 617 DVQNLVNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQ--YLNKLAFLYLVSCESLRSLPHTI---- 689 (940)
Q Consensus 617 ~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~l~~~~---- 689 (940)
.+.++++|++|+|++|.+....|. +..+++|++|++++|......+..+. .+++|+.|++++|......|..+
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 195 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS
T ss_pred HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhh
Confidence 566677777777777765555553 66667777777776654444443332 34666666666664443333221
Q ss_pred ------------------------CCCCCCEEEecCCCCCCcCCCCCc----CCccEEecCCCCCcccC-ccccccCCCc
Q 002299 690 ------------------------RSESLFELRLSGCTSLKRFPKISS----CFLKDLDLESCGIEELP-SSIECLYNLR 740 (940)
Q Consensus 690 ------------------------~l~~L~~L~l~~~~~l~~~~~~~~----~~L~~L~L~~~~i~~lp-~~~~~l~~L~ 740 (940)
..++|+.|++++|......+.... .+|++|++++|.++.++ ..+..+++|+
T Consensus 196 ~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (680)
T 1ziw_A 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275 (680)
T ss_dssp EECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccccc
Confidence 013445555555443322222221 13666666666665443 3355566666
Q ss_pred EEEecCCCCCcccccccCCCCCCcEEE---------------------------------ecCCCCCCcCCCCCcchhcc
Q 002299 741 SIDLLNCTRLEYIASSIFTLKSLESIR---------------------------------ISKCSNLRKFPEIPSCIIDE 787 (940)
Q Consensus 741 ~L~l~~~~~~~~~~~~l~~l~~L~~L~---------------------------------l~~~~~~~~~~~~~~~~~~~ 787 (940)
.|++++|.+.+..|..+.++++|+.|+ +++|......+.....+..+
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 355 (680)
T 1ziw_A 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355 (680)
T ss_dssp EEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC
T ss_pred EeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCC
Confidence 666666555544444444444444444 33333221111110000000
Q ss_pred --------------------ccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCC-ccCCCCCCCCEE
Q 002299 788 --------------------AGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLP-DELGNLKALEEL 846 (940)
Q Consensus 788 --------------------~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L 846 (940)
.....++|+.|++++|.+....|..+..+++|+.|++++|.+.+.+| ..+.++++|++|
T Consensus 356 ~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L 435 (680)
T 1ziw_A 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435 (680)
T ss_dssp CEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEE
T ss_pred cEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEE
Confidence 00011356666666666665666667777777777777777765444 566677777777
Q ss_pred EccCCCCccCchh-HHHh---------------hhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCc
Q 002299 847 TVEGTAMREVPES-LGQL---------------LESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKC 910 (940)
Q Consensus 847 ~L~~n~l~~lp~~-l~~l---------------~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 910 (940)
++++|++..++.. +..+ .+.+|..+.++++|+.|+|++|.+....|..+..+++|+.|++++|.
T Consensus 436 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp ECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence 7777776544321 1100 13566777778888888888887776656667777778888877775
Q ss_pred c
Q 002299 911 S 911 (940)
Q Consensus 911 ~ 911 (940)
+
T Consensus 516 l 516 (680)
T 1ziw_A 516 L 516 (680)
T ss_dssp C
T ss_pred c
Confidence 4
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=284.41 Aligned_cols=357 Identities=17% Similarity=0.167 Sum_probs=200.5
Q ss_pred ccccCCcceEEeChhhhccCCCcceEEEecCCCcccccC-CCCCC--CCcceEEeCCCCCchhh---h-hhhcccccccc
Q 002299 539 LDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHF-EGAPF--TDVRYFEWHKSPLKSLN---I-RAENLVSLILP 611 (940)
Q Consensus 539 l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l-~~~~~--~~L~~L~l~~~~l~~l~---l-~~~~L~~l~l~ 611 (940)
+|++.+. ...+.+..|.++++|++|++++|.. +..+ +..+. ++|++|++++|.+..+. + ...+|+.++++
T Consensus 29 LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 29 LLLSFNY-IRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp EEEESCC-CCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred EECCCCc-CCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 4444443 4567788899999999999998842 2344 32232 88999999999887651 1 01222222222
Q ss_pred c-----ccccc--ccccCCCceeeCCCCCCCCcCC--CcccCCCccEEeccCCCCCccccccccCC--CcccEEEecCCC
Q 002299 612 G-----RLWDD--VQNLVNLKEIDLSDSKQLTKLP--DLSLARNLESLDLWGCSSLMETHSSIQYL--NKLAFLYLVSCE 680 (940)
Q Consensus 612 ~-----~l~~~--~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~l--~~L~~L~l~~~~ 680 (940)
+ ..|.. +.++++|++|+|++|.+....+ .|+++++|++|++++|.+....+..+..+ ++|+.|++++|.
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 2 12222 4455555555555554433322 14555555555555554444444444444 455555555554
Q ss_pred CCcccCCcc-CC------CCCCEEEecCCCCCCcCCC----------------------------------------CCc
Q 002299 681 SLRSLPHTI-RS------ESLFELRLSGCTSLKRFPK----------------------------------------ISS 713 (940)
Q Consensus 681 ~~~~l~~~~-~l------~~L~~L~l~~~~~l~~~~~----------------------------------------~~~ 713 (940)
.....|..+ .+ .+|+.|++++|......+. ...
T Consensus 186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 433333222 11 2377777777632211110 001
Q ss_pred CCccEEecCCCCCccc-CccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 714 CFLKDLDLESCGIEEL-PSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 714 ~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
.+|+.|++++|.+..+ |..+..+++|+.|++++|.+.+..+..+.++++|++|++++|...... +..+..+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l----- 337 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY---SSNFYGL----- 337 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC---SCSCSSC-----
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC---HHHhcCC-----
Confidence 2477777777777755 344677777777777777777666767777777777777776554222 2233333
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHh---------
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQL--------- 863 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l--------- 863 (940)
++|+.|++++|.+....+..+..+++|+.|++++|.+.+ ++ .+++|+.|++++|++..+|.....+
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcccccccccccceeecccCc
Confidence 777778887777665555667777778888887777654 22 2556666666666666555321111
Q ss_pred hhccCc--cccCCCCCCEEeccCCCCCcccCC-CcCCchhhhhhhccCCcc
Q 002299 864 LESLPS--SLYKSKCLQDSYLDDCPNLHRLPD-ELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 864 ~~~lp~--~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~ 911 (940)
+..++. .+.++++|+.|+|++|++....+. .+..+++|+.|++++|.+
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence 111111 134667777777777776543222 344456666666666644
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.9e-26 Score=275.32 Aligned_cols=189 Identities=18% Similarity=0.109 Sum_probs=105.0
Q ss_pred CccEEecCCCCCccc-CccccccCCCcEEEecCCCCCcccc-cccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 715 FLKDLDLESCGIEEL-PSSIECLYNLRSIDLLNCTRLEYIA-SSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 715 ~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
+|+.|++++|.++.+ |..+..+++|+.|++++|.+.+.+| ..+.++++|+.|++++|......+ ..+..+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~----- 453 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR---NSFALV----- 453 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT---TTTTTC-----
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh---hhhhcC-----
Confidence 355555566665544 3345666666666666666555444 455666666666666654322111 112222
Q ss_pred CCceEEEcCCCCCC--ccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchh---------HH
Q 002299 793 QALSKLELNNCSRL--ESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPES---------LG 861 (940)
Q Consensus 793 ~~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~---------l~ 861 (940)
++|+.|++++|... ...|..+..+++|+.|++++|.+.+..+..+.++++|++|++++|.++.++.. +.
T Consensus 454 ~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ 533 (680)
T 1ziw_A 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533 (680)
T ss_dssp TTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT
T ss_pred cccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhc
Confidence 56666666666543 34566666667777777777766665555566667777777777766654311 00
Q ss_pred Hh------------hhccCc-cccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 862 QL------------LESLPS-SLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 862 ~l------------~~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
.+ +..+|. .|.++++|+.|+|++|.+....+..+..+++|+.|++++|.+
T Consensus 534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 00 122332 255566666666666665544444455666666666666643
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.4e-26 Score=259.01 Aligned_cols=311 Identities=13% Similarity=0.072 Sum_probs=238.5
Q ss_pred cCCCcceEEEecCCCcccccCCCCCC---CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCC
Q 002299 557 MMPELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSK 633 (940)
Q Consensus 557 ~~~~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~ 633 (940)
.+++++.|++.++ .+..+|...+ ++|++|++++|.+..+ .+..+..+++|++|+|++|.
T Consensus 43 ~l~~l~~l~l~~~---~l~~l~~~~~~~l~~L~~L~L~~n~i~~~---------------~~~~~~~l~~L~~L~L~~n~ 104 (390)
T 3o6n_A 43 TLNNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQIEEI---------------DTYAFAYAHTIQKLYMGFNA 104 (390)
T ss_dssp GGCCCSEEEEESC---EESEECTHHHHHCCCCSEEECTTSCCCEE---------------CTTTTTTCTTCCEEECCSSC
T ss_pred ccCCceEEEecCC---chhhCChhHhcccccCcEEECCCCccccc---------------ChhhccCCCCcCEEECCCCC
Confidence 4678888888887 4566676543 7888888888887754 23467888999999999998
Q ss_pred CCCcCCC-cccCCCccEEeccCCCCCccccc-cccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCC
Q 002299 634 QLTKLPD-LSLARNLESLDLWGCSSLMETHS-SIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPK 710 (940)
Q Consensus 634 ~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~ 710 (940)
+....|. |..+++|++|++++|... .+|. .+..+++|++|++++|......+..+ .+++|++|++++|... .++.
T Consensus 105 l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 182 (390)
T 3o6n_A 105 IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL 182 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG
T ss_pred CCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc
Confidence 7776665 788999999999998555 4554 45889999999999987665555544 5889999999887643 3333
Q ss_pred CCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccc
Q 002299 711 ISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGI 790 (940)
Q Consensus 711 ~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 790 (940)
....+|+.|++++|.++.++ ..++|+.|++++|.+... |.. .+++|+.|++++|.... +..+..+
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~-----~~~l~~l--- 247 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTD-----TAWLLNY--- 247 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCC-----CGGGGGC---
T ss_pred ccccccceeecccccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcc-----cHHHcCC---
Confidence 33346999999999887653 356899999999876554 332 35789999999986542 1344444
Q ss_pred cCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcc
Q 002299 791 KRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSS 870 (940)
Q Consensus 791 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~ 870 (940)
++|+.|++++|.+....|..+..+++|+.|++++|.+.+ +|..+..+++|++|+|++|++..+|..+.
T Consensus 248 --~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------- 315 (390)
T 3o6n_A 248 --PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQP--------- 315 (390)
T ss_dssp --TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHH---------
T ss_pred --CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCcccc---------
Confidence 899999999998888888889999999999999998875 66667788999999999999888775543
Q ss_pred ccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCCccchh
Q 002299 871 LYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRSTLVYY 919 (940)
Q Consensus 871 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~l~~~ 919 (940)
.+++|+.|+|++|++.. +| +..+++|+.|++++|++.+.++..+
T Consensus 316 --~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 316 --QFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp --HHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred --ccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccchhHHHH
Confidence 46889999999998765 34 7788999999999998877654443
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.2e-26 Score=275.72 Aligned_cols=356 Identities=20% Similarity=0.188 Sum_probs=222.7
Q ss_pred eccccCCcceEEeChhhhccCCCcceEEEecCCCcccccCCCCCC---CCcceEEeCCCCCchhh---hh-hhccccccc
Q 002299 538 SLDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSPLKSLN---IR-AENLVSLIL 610 (940)
Q Consensus 538 ~l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~l~~l~---l~-~~~L~~l~l 610 (940)
.||++.+. ...+++.+|.++++|++|++++| .|..++.+.+ .+|++|++++|.++.+. |. ..+|+.+++
T Consensus 56 ~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N---~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 56 NLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECTTC---CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred EEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC---cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 45566654 66788999999999999999998 4566665544 89999999999998772 21 234444444
Q ss_pred cc-----cccccccccCCCceeeCCCCCCCCc-CCC-cccCCCccEEeccCCCCCccccccccCCCc-------------
Q 002299 611 PG-----RLWDDVQNLVNLKEIDLSDSKQLTK-LPD-LSLARNLESLDLWGCSSLMETHSSIQYLNK------------- 670 (940)
Q Consensus 611 ~~-----~l~~~~~~l~~L~~L~L~~~~~~~~-~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~------------- 670 (940)
.+ ..+..++++++|++|+|++|.+... .|. ++.+++|++|++++|.+....+..+..+.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 43 2223466677777777777655432 233 566677777777766544333322221111
Q ss_pred --------------ccEEEecCCCCCc-----------------------------------------------------
Q 002299 671 --------------LAFLYLVSCESLR----------------------------------------------------- 683 (940)
Q Consensus 671 --------------L~~L~l~~~~~~~----------------------------------------------------- 683 (940)
+..+++.+|....
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 1111111110000
Q ss_pred ----------------------------ccCCccCCCCCCEEEecCCCCCC---------------------cCCCCCcC
Q 002299 684 ----------------------------SLPHTIRSESLFELRLSGCTSLK---------------------RFPKISSC 714 (940)
Q Consensus 684 ----------------------------~l~~~~~l~~L~~L~l~~~~~l~---------------------~~~~~~~~ 714 (940)
.++......+|+.|++.+|.... ........
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 00000011233444444432110 00111112
Q ss_pred CccEEecCCCCCcc---cCccccccCCCcEEEecCC-----------------------CCCcccc-cccCCCCCCcEEE
Q 002299 715 FLKDLDLESCGIEE---LPSSIECLYNLRSIDLLNC-----------------------TRLEYIA-SSIFTLKSLESIR 767 (940)
Q Consensus 715 ~L~~L~L~~~~i~~---lp~~~~~l~~L~~L~l~~~-----------------------~~~~~~~-~~l~~l~~L~~L~ 767 (940)
+|+.|++++|.+.. .+..+..+.+|+.|++..| +.....+ ..+..+++|+.++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 46777777776652 2233344455555555444 3322222 2344555566666
Q ss_pred ecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCc-cccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEE
Q 002299 768 ISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLE-SFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEEL 846 (940)
Q Consensus 768 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 846 (940)
++.|......+.. +.. +++|+.|++++|.... ..|..+..+++|+.|+|++|.+.+..|..|.++++|++|
T Consensus 452 ls~n~l~~~~~~~---~~~-----~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 452 ISHTHTRVAFNGI---FNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTSCCEECCTTT---TTT-----CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccc---ccc-----chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 6655433222222 222 2889999999997554 467789999999999999999998888899999999999
Q ss_pred EccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCc-hhhhhhhccCCccCCCc
Q 002299 847 TVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSL-EALKRLYAEGKCSDRST 915 (940)
Q Consensus 847 ~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~l~~n~~~~~~ 915 (940)
+|++|+++.+| |..|.++++|+.|+|++|++.+..|..+.++ ++|+.|++++|++.|++
T Consensus 524 ~Ls~N~l~~l~----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 524 NMSHNNFFSLD----------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp ECTTSCCCBCC----------CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred ECCCCcCCCCC----------hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999998876 3457789999999999999999889999888 68999999999998865
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2e-26 Score=272.03 Aligned_cols=309 Identities=13% Similarity=0.071 Sum_probs=213.2
Q ss_pred CCCcceEEEecCCCcccccCCCCCC---CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCC
Q 002299 558 MPELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQ 634 (940)
Q Consensus 558 ~~~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~ 634 (940)
+++++.|++.+| .+..+|...+ ++|++|++++|.+..+ .|..+..+++|++|+|++|.+
T Consensus 50 l~~l~~l~l~~~---~l~~lp~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~n~l 111 (597)
T 3oja_B 50 LNNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQIEEI---------------DTYAFAYAHTIQKLYMGFNAI 111 (597)
T ss_dssp GCCCSEEEESSC---EESEECTHHHHHCCCCSEEECTTSCCCEE---------------CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCceEEEeeCC---CCCCcCHHHHccCCCCcEEECCCCCCCCC---------------ChHHhcCCCCCCEEECCCCcC
Confidence 567777777776 4455565443 6777777777776654 234577778888888888876
Q ss_pred CCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCC
Q 002299 635 LTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKIS 712 (940)
Q Consensus 635 ~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~ 712 (940)
...+|. |+.+++|++|+|++|.+....+..++++++|++|++++|......|..+ .+++|++|++++|.. ..++...
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~ 190 (597)
T 3oja_B 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSL 190 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCCGGG
T ss_pred CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcChhh
Confidence 666554 6778888888888875554333445778888888888876665555444 577888888887753 3333333
Q ss_pred cCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 713 SCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 713 ~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
..+|+.|++++|.++.++ ..++|+.|++++|.+.... ..+ .++|+.|++++|.... +..+..+
T Consensus 191 l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~~-----~~~l~~l----- 253 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVR-GPV--NVELTILKLQHNNLTD-----TAWLLNY----- 253 (597)
T ss_dssp CTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEE-CSC--CSCCCEEECCSSCCCC-----CGGGGGC-----
T ss_pred hhhhhhhhcccCcccccc----CCchhheeeccCCcccccc-ccc--CCCCCEEECCCCCCCC-----ChhhccC-----
Confidence 335888888888776543 3567888888887654433 222 3678888888876442 2334444
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
++|+.|+|++|.+....|..+..+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|.+..+|..+.
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~----------- 321 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQP----------- 321 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHH-----------
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccc-----------
Confidence 788888888888777777778888888888888888765 56666778888888888888877765443
Q ss_pred CCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCCccc
Q 002299 873 KSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRSTLV 917 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~l~ 917 (940)
.+++|+.|+|++|++... | +..+++|+.|++++|++.+.++.
T Consensus 322 ~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH
Confidence 467788888888877553 3 66777888888888877655443
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=283.63 Aligned_cols=257 Identities=18% Similarity=0.135 Sum_probs=190.9
Q ss_pred ccccCCcceEEeChhhhccCCCcceEEEecCCCcccccC-CCCCC--CCcceEEeCCCCCchh--h---h-hhhcccccc
Q 002299 539 LDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHF-EGAPF--TDVRYFEWHKSPLKSL--N---I-RAENLVSLI 609 (940)
Q Consensus 539 l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l-~~~~~--~~L~~L~l~~~~l~~l--~---l-~~~~L~~l~ 609 (940)
+|++.+.....+.+.+|.++++|++|++++|.. ..+ |..+. .+|++|++++|.+... . + ...+|+.++
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTCCC---CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCCcC---cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 444444325567788999999999999999844 333 33333 8999999999988752 1 2 124555555
Q ss_pred ccc-----c-ccccccccCCCceeeCCCCCCCCcCCC-cccC--CCccEEeccCCCCCccccccccCCCc------ccEE
Q 002299 610 LPG-----R-LWDDVQNLVNLKEIDLSDSKQLTKLPD-LSLA--RNLESLDLWGCSSLMETHSSIQYLNK------LAFL 674 (940)
Q Consensus 610 l~~-----~-l~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~------L~~L 674 (940)
+++ . .+..++++++|++|+|++|.+....+. +..+ ++|+.|++++|......|..+..+++ |+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 554 2 345789999999999999988776664 7777 89999999999888888877777666 9999
Q ss_pred EecCCCCCcccCCcc---------------------------------------CCCCCCEEEecCCCCCCcCCCCCcC-
Q 002299 675 YLVSCESLRSLPHTI---------------------------------------RSESLFELRLSGCTSLKRFPKISSC- 714 (940)
Q Consensus 675 ~l~~~~~~~~l~~~~---------------------------------------~l~~L~~L~l~~~~~l~~~~~~~~~- 714 (940)
++++|......+..+ ..++|+.|++++|......+..+..
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 999995543332211 1368999999998765544443332
Q ss_pred -CccEEecCCCCCcccC-ccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 715 -FLKDLDLESCGIEELP-SSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 715 -~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
+|+.|+|++|.++.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.... ++ +..+..+
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~l----- 361 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQ--DQTFKFL----- 361 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CC--SSCSCSC-----
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cC--hhhhcCC-----
Confidence 7999999999999774 568999999999999999888888899999999999999986542 22 2223333
Q ss_pred CCceEEEcCCCCCC
Q 002299 793 QALSKLELNNCSRL 806 (940)
Q Consensus 793 ~~L~~L~L~~~~~~ 806 (940)
++|+.|++++|.+.
T Consensus 362 ~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 362 EKLQTLDLRDNALT 375 (844)
T ss_dssp CCCCEEEEETCCSC
T ss_pred CCCCEEECCCCCCC
Confidence 78888888887654
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=7.3e-26 Score=259.21 Aligned_cols=320 Identities=18% Similarity=0.180 Sum_probs=220.6
Q ss_pred hhccCCCcceEEEecCCCcccccCCC-CCCCCcceEEeCCCCCchhh-h-hhhccccccccc----cccccccccCCCce
Q 002299 554 TFSMMPELRFLKFYGQNKCMITHFEG-APFTDVRYFEWHKSPLKSLN-I-RAENLVSLILPG----RLWDDVQNLVNLKE 626 (940)
Q Consensus 554 ~f~~~~~Lr~L~l~~~~~~~i~~l~~-~~~~~L~~L~l~~~~l~~l~-l-~~~~L~~l~l~~----~l~~~~~~l~~L~~ 626 (940)
.+..+++|++|++++|.... ++. ....+|++|++++|.+..+. + ...+|+.+++.+ .++ .+.++++|++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 138 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNR 138 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCC---CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred chhhhcCCCEEECCCCccCC---chhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh-HHcCCCCCCE
Confidence 37778888888888874433 332 22278888888888877651 1 112333333333 122 2566666666
Q ss_pred eeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCC
Q 002299 627 IDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLK 706 (940)
Q Consensus 627 L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~ 706 (940)
|++++|.+. .++.+..+++|++|+++++ ... .+ .+..+++|+.|++++|.. ..++....+++|++|++++|....
T Consensus 139 L~l~~n~l~-~~~~~~~l~~L~~L~l~~~-~~~-~~-~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 139 LELSSNTIS-DISALSGLTSLQQLSFGNQ-VTD-LK-PLANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEEEEC-CCGGGTTCTTCSEEEEEES-CCC-CG-GGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCC
T ss_pred EECCCCccC-CChhhccCCcccEeecCCc-ccC-ch-hhccCCCCCEEECcCCcC-CCChhhccCCCCCEEEecCCcccc
Confidence 666666533 3445666666666666532 222 22 377788888888888754 344444467888888888876554
Q ss_pred cCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhc
Q 002299 707 RFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIID 786 (940)
Q Consensus 707 ~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 786 (940)
..+.....+|++|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.... .+. +..
T Consensus 214 ~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----~~~-~~~ 285 (466)
T 1o6v_A 214 ITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN----ISP-LAG 285 (466)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC----CGG-GTT
T ss_pred cccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc----ccc-ccC
Confidence 444333336888888888888775 47788888888888887765544 7788888888888875442 222 333
Q ss_pred cccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhc
Q 002299 787 EAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLES 866 (940)
Q Consensus 787 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~ 866 (940)
+ ++|+.|++++|.+....+ +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+..++
T Consensus 286 l-----~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------- 347 (466)
T 1o6v_A 286 L-----TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--------- 347 (466)
T ss_dssp C-----TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG---------
T ss_pred C-----CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch---------
Confidence 3 888999999887665433 6788889999999998877544 678889999999999887653
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCC
Q 002299 867 LPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 867 lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 913 (940)
.+.++++|+.|++++|++.+..| +..+++|+.|++++|.+..
T Consensus 348 ---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 348 ---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 35678999999999999887766 8899999999999986543
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=259.17 Aligned_cols=293 Identities=19% Similarity=0.192 Sum_probs=239.5
Q ss_pred CCcceEEEecCCCcccccCCCCC---CCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCC
Q 002299 559 PELRFLKFYGQNKCMITHFEGAP---FTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQL 635 (940)
Q Consensus 559 ~~Lr~L~l~~~~~~~i~~l~~~~---~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~ 635 (940)
++++.|++++|.. ..++... .++|++|++++|.+..+ .|..+.++++|++|+|++|.+.
T Consensus 32 ~~l~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~i~~~---------------~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 32 TETRLLDLGKNRI---KTLNQDEFASFPHLEELELNENIVSAV---------------EPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TTCSEEECCSSCC---CEECTTTTTTCTTCCEEECTTSCCCEE---------------CTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEECCCCcc---ceECHhHccCCCCCCEEECCCCccCEe---------------ChhhhhCCccCCEEECCCCcCC
Confidence 5789999998843 4443322 28899999999887754 3567889999999999999866
Q ss_pred CcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCC---
Q 002299 636 TKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPK--- 710 (940)
Q Consensus 636 ~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~--- 710 (940)
...+. |..+++|++|+|++|......+..+..+++|++|++++|......+..+ .+++|++|++++|... .++.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l 172 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEAL 172 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHH
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHh
Confidence 55554 8899999999999998887788889999999999999997766656555 5899999999998643 3332
Q ss_pred CCcCCccEEecCCCCCcccCc-cccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCC-cchhccc
Q 002299 711 ISSCFLKDLDLESCGIEELPS-SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIP-SCIIDEA 788 (940)
Q Consensus 711 ~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~ 788 (940)
....+|+.|++++|.+..++. .+..+++|+.|++++|...+.++.......+|+.|++++|... .+| ..+..+
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l- 247 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT----AVPYLAVRHL- 247 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC----SCCHHHHTTC-
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc----ccCHHHhcCc-
Confidence 112369999999999997765 5889999999999999999988887777789999999998643 333 234444
Q ss_pred cccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccC
Q 002299 789 GIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLP 868 (940)
Q Consensus 789 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp 868 (940)
++|+.|+|++|.+....+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.++.+|.
T Consensus 248 ----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------- 313 (477)
T 2id5_A 248 ----VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE---------- 313 (477)
T ss_dssp ----TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG----------
T ss_pred ----cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH----------
Confidence 899999999999887777788999999999999999998888899999999999999999988774
Q ss_pred ccccCCCCCCEEeccCCCCCc
Q 002299 869 SSLYKSKCLQDSYLDDCPNLH 889 (940)
Q Consensus 869 ~~~~~l~~L~~L~L~~n~~~~ 889 (940)
..|..+++|+.|+|++|++..
T Consensus 314 ~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp GGBSCGGGCCEEECCSSCEEC
T ss_pred hHcCCCcccCEEEccCCCccC
Confidence 346778999999999998754
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.6e-26 Score=269.84 Aligned_cols=357 Identities=20% Similarity=0.201 Sum_probs=210.9
Q ss_pred ccccCCcceEEeChhhhccCCCcceEEEecCCCcccccCCCCCC---CCcceEEeCCCCCchhh---h-hhhcccccccc
Q 002299 539 LDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSPLKSLN---I-RAENLVSLILP 611 (940)
Q Consensus 539 l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~l~~l~---l-~~~~L~~l~l~ 611 (940)
+|++.+. ...+.+..|.++++|++|++++|. +..++...+ .+|++|++++|.+..+. + ...+|+.+++.
T Consensus 33 L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 33 LDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp EECCSCC-CCEECTTTTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred EEccCCc-cCccChhHhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 4555544 456778899999999999999984 445544332 89999999999987762 1 12455555555
Q ss_pred c----ccc-ccccccCCCceeeCCCCCCCC-cCC-CcccCCCccEEeccCCCCCccccccccCCCcc----cEEEecCCC
Q 002299 612 G----RLW-DDVQNLVNLKEIDLSDSKQLT-KLP-DLSLARNLESLDLWGCSSLMETHSSIQYLNKL----AFLYLVSCE 680 (940)
Q Consensus 612 ~----~l~-~~~~~l~~L~~L~L~~~~~~~-~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L----~~L~l~~~~ 680 (940)
+ .++ ..++++++|++|++++|.+.. .+| .++++++|++|++++|......+..+..+++| ..|++++|.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 4 222 247778888888888886654 345 37778888888888876666666667777777 777887776
Q ss_pred CCcccCCccCCCCCCEEEecCCCCC-------------------------------------------------------
Q 002299 681 SLRSLPHTIRSESLFELRLSGCTSL------------------------------------------------------- 705 (940)
Q Consensus 681 ~~~~l~~~~~l~~L~~L~l~~~~~l------------------------------------------------------- 705 (940)
.....|..+...+|+.|++++|..-
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 5544444343334555555443100
Q ss_pred ---CcCCCCCc--CCccEEecCCCCCcccCcccccc--------------------CCCcEEEecCCCCCcccccccCCC
Q 002299 706 ---KRFPKISS--CFLKDLDLESCGIEELPSSIECL--------------------YNLRSIDLLNCTRLEYIASSIFTL 760 (940)
Q Consensus 706 ---~~~~~~~~--~~L~~L~L~~~~i~~lp~~~~~l--------------------~~L~~L~l~~~~~~~~~~~~l~~l 760 (940)
...+.... .+|++|++++|.++.+|..+..+ ++|+.|++++|......+. ..+
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~ 346 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDL 346 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBC
T ss_pred hhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccC
Confidence 00001110 13555555555555554444433 3333333333332222221 445
Q ss_pred CCCcEEEecCCCCCCcCCCCCcchhccc------------------cccCCCceEEEcCCCCCCcccc-CccCCCCCccE
Q 002299 761 KSLESIRISKCSNLRKFPEIPSCIIDEA------------------GIKRQALSKLELNNCSRLESFP-SSLCMFESLAS 821 (940)
Q Consensus 761 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~ 821 (940)
++|+.|++++|.... .+..+..+..+. ...+++|++|++++|.+....+ ..+..+++|++
T Consensus 347 ~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSF-KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBE-EEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCc-cccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 666666666654321 110112222220 0012445555555544333322 23445555555
Q ss_pred EeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhh
Q 002299 822 LKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEAL 901 (940)
Q Consensus 822 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 901 (940)
|++++|.+.+..|..+..+++|++|++++|.+. ...+|..+..+++|+.|+|++|++.+..|..+..+++|
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEG---------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCc---------cccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 555555555545555555555555555555442 13567788899999999999999998889999999999
Q ss_pred hhhhccCCcc
Q 002299 902 KRLYAEGKCS 911 (940)
Q Consensus 902 ~~L~l~~n~~ 911 (940)
+.|++++|.+
T Consensus 497 ~~L~l~~n~l 506 (570)
T 2z63_A 497 QVLNMASNQL 506 (570)
T ss_dssp CEEECCSSCC
T ss_pred CEEeCCCCcC
Confidence 9999999965
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.8e-26 Score=271.02 Aligned_cols=340 Identities=18% Similarity=0.144 Sum_probs=203.7
Q ss_pred CCcceEEEecCCCcccccCC-CCC--CCCcceEEeCCCCCchhh---h-hhhccccccccc-----cccccccccCCCce
Q 002299 559 PELRFLKFYGQNKCMITHFE-GAP--FTDVRYFEWHKSPLKSLN---I-RAENLVSLILPG-----RLWDDVQNLVNLKE 626 (940)
Q Consensus 559 ~~Lr~L~l~~~~~~~i~~l~-~~~--~~~L~~L~l~~~~l~~l~---l-~~~~L~~l~l~~-----~l~~~~~~l~~L~~ 626 (940)
++|++|++++|.. ..++ ..+ .++|++|++++|.+..+. + ...+|+.+++++ ..|..++++++|++
T Consensus 26 ~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKI---TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCC---CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCcc---CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 7899999999954 3443 222 389999999999987762 1 123444444443 33444777777777
Q ss_pred eeCCCCCCCCc-CC-CcccCCCccEEeccCCCCCcccc-ccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCC
Q 002299 627 IDLSDSKQLTK-LP-DLSLARNLESLDLWGCSSLMETH-SSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGC 702 (940)
Q Consensus 627 L~L~~~~~~~~-~~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~ 702 (940)
|+|++|.+... .| .+..+++|++|++++|.....+| ..+..+++|++|++++|......|..+ .+++|++|++++|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 77777765542 23 47777777777777776555554 467777777777777776666566555 4677777777776
Q ss_pred CCCCcCCCCC---cCCccEEecCCCCCcccC---cc-ccccCCCcEEE--------------------------------
Q 002299 703 TSLKRFPKIS---SCFLKDLDLESCGIEELP---SS-IECLYNLRSID-------------------------------- 743 (940)
Q Consensus 703 ~~l~~~~~~~---~~~L~~L~L~~~~i~~lp---~~-~~~l~~L~~L~-------------------------------- 743 (940)
... .++... ..+|++|++++|.++.++ .. ...+++|+.|+
T Consensus 183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp BST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 532 222111 225888888888776542 11 11122222222
Q ss_pred -------------------------------------------------------ecCCCCCccccccc-CCCCCCcEEE
Q 002299 744 -------------------------------------------------------LLNCTRLEYIASSI-FTLKSLESIR 767 (940)
Q Consensus 744 -------------------------------------------------------l~~~~~~~~~~~~l-~~l~~L~~L~ 767 (940)
+++|.+ ..+|..+ ..+++|+.|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEE
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEE
Confidence 222221 1222222 2345555555
Q ss_pred ecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCcccc--CccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCE
Q 002299 768 ISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFP--SSLCMFESLASLKIIDCPRLDGLPDELGNLKALEE 845 (940)
Q Consensus 768 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 845 (940)
+++|......+..+.++.. +++|+.|++++|.+....+ ..+..+++|+.|++++|.+. .+|..+..+++|++
T Consensus 341 Ls~N~l~~~~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGA-----WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTS-----STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCE
T ss_pred ccCCccccccccchhhhhc-----cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccE
Confidence 5554433211110111122 2667777777775543321 34667777888888887766 46777777788888
Q ss_pred EEccCCCCccCchhHHH----h---hhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 846 LTVEGTAMREVPESLGQ----L---LESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 846 L~L~~n~l~~lp~~l~~----l---~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
|++++|.++.+|..+.. + -..+...+..+++|+.|+|++|++. .+|. ...+++|+.|++++|.+
T Consensus 415 L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp EECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCC
T ss_pred EECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCcc
Confidence 88888887766643221 1 0011112346889999999999876 5776 56789999999999865
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=261.67 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=139.7
Q ss_pred CCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcc-cCccccccCCCcEEEecCCCCCc--ccccccCCCCCCcEEEec
Q 002299 693 SLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEE-LPSSIECLYNLRSIDLLNCTRLE--YIASSIFTLKSLESIRIS 769 (940)
Q Consensus 693 ~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~ 769 (940)
+|+.|++++|............+|++|++++|.++. +|..+..+++|+.|++++|.+.+ .+|..+..+++|+.|+++
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 455555555543222111223369999999999996 78889999999999999998876 566778999999999999
Q ss_pred CCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEcc
Q 002299 770 KCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVE 849 (940)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~ 849 (940)
+|.....+|.. .+..+ ++|+.|++++|.+....|..+. ++|+.|++++|.+. .+|..+..+++|++|+|+
T Consensus 383 ~N~l~~~l~~~--~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 383 QNSVSYDEKKG--DCSWT-----KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452 (520)
T ss_dssp SSCCBCCGGGC--SCCCC-----TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred CCcCCcccccc--hhccC-----ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence 98765433321 12223 8999999999998877776553 79999999999988 588888899999999999
Q ss_pred CCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcc
Q 002299 850 GTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHR 890 (940)
Q Consensus 850 ~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~ 890 (940)
+|+++.+|.. .+..+++|+.|++++|++...
T Consensus 453 ~N~l~~l~~~----------~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 453 SNQLKSVPDG----------IFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SSCCCCCCTT----------TTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCCccCHH----------HhccCCcccEEECcCCCCccc
Confidence 9999887742 366799999999999998754
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=4.8e-25 Score=242.51 Aligned_cols=285 Identities=15% Similarity=0.173 Sum_probs=228.9
Q ss_pred hhccCCCcceEEEecCCCcccccCCC-CCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCC
Q 002299 554 TFSMMPELRFLKFYGQNKCMITHFEG-APFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDS 632 (940)
Q Consensus 554 ~f~~~~~Lr~L~l~~~~~~~i~~l~~-~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~ 632 (940)
.|..+++|++|++++|... .++. ...++|++|++++|.+..+ ..+.++++|++|++++|
T Consensus 61 ~~~~~~~L~~L~l~~n~i~---~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDI-----------------SALQNLTNLRELYLNED 120 (347)
T ss_dssp TGGGCTTCCEEECCSSCCC---CCGGGTTCTTCCEEECCSSCCCCC-----------------GGGTTCTTCSEEECTTS
T ss_pred hhhhcCCccEEEccCCccc---cchhhhcCCcCCEEEccCCcccCc-----------------hHHcCCCcCCEEECcCC
Confidence 4889999999999998543 3333 2238999999999988764 24788999999999999
Q ss_pred CCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCC
Q 002299 633 KQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKIS 712 (940)
Q Consensus 633 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~ 712 (940)
.+.. ++.+..+++|++|++++|......+ .+..+++|++|++++|.... ++....+++|++|++++|......+...
T Consensus 121 ~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (347)
T 4fmz_A 121 NISD-ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQIEDISPLAS 197 (347)
T ss_dssp CCCC-CGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECTTSCCCCCGGGGG
T ss_pred cccC-chhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chhhccCCCCCEEEccCCcccccccccC
Confidence 7554 4559999999999999997666554 48999999999999996544 4444578999999999987443322222
Q ss_pred cCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 713 SCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 713 ~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
..+|+.|++++|.++.++. +..+++|+.|++++|.+....+ +..+++|++|++++|.... + ..+..+
T Consensus 198 l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~----~~~~~l----- 264 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I----NAVKDL----- 264 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C----GGGTTC-----
T ss_pred CCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C----hhHhcC-----
Confidence 2379999999999998877 8899999999999988766544 8899999999999986542 2 233334
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
++|+.|++++|.+... + .+..+++|+.|++++|.+.+..|..+..+++|++|++++|+++.+++ +.
T Consensus 265 ~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------------~~ 330 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP------------LA 330 (347)
T ss_dssp TTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG------------GG
T ss_pred CCcCEEEccCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC------------hh
Confidence 8999999999977653 3 47889999999999999988778889999999999999999987763 45
Q ss_pred CCCCCCEEeccCCCCC
Q 002299 873 KSKCLQDSYLDDCPNL 888 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~ 888 (940)
.+++|+.|++++|++.
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 6899999999999874
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3.8e-25 Score=253.27 Aligned_cols=315 Identities=17% Similarity=0.205 Sum_probs=180.3
Q ss_pred ccCCCcceEEEecCCCcccccCCCCC-CCCcceEEeCCCCCchhh-h-hhhccccccccc----cccccccccCCCceee
Q 002299 556 SMMPELRFLKFYGQNKCMITHFEGAP-FTDVRYFEWHKSPLKSLN-I-RAENLVSLILPG----RLWDDVQNLVNLKEID 628 (940)
Q Consensus 556 ~~~~~Lr~L~l~~~~~~~i~~l~~~~-~~~L~~L~l~~~~l~~l~-l-~~~~L~~l~l~~----~l~~~~~~l~~L~~L~ 628 (940)
..+++|+.|++.++. +..++... .++|++|++++|.++.+. + ...+|+.+++.+ .++. +.++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~---i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSC---CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCC---CccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 345788999998874 34555422 389999999999988762 1 112333333333 1122 45555555555
Q ss_pred CCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcC
Q 002299 629 LSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRF 708 (940)
Q Consensus 629 L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~ 708 (940)
+++|.+.. ++.+..+++|++|++++|.... ++ .+..+++|+.|+++++ ...++....+++|+.|++++|.. ..+
T Consensus 119 L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l-~~~ 192 (466)
T 1o6v_A 119 LFNNQITD-IDPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNKV-SDI 192 (466)
T ss_dssp CCSSCCCC-CGGGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSCC-CCC
T ss_pred CCCCCCCC-ChHHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCcC-CCC
Confidence 55554332 2235555555555555553222 22 2455555555555422 12222233456666666666542 222
Q ss_pred CCCCc-CCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhcc
Q 002299 709 PKISS-CFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDE 787 (940)
Q Consensus 709 ~~~~~-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 787 (940)
+.... .+|++|++++|.++.+++ +..+++|+.|++++|.+... ..+..+++|+.|++++|..... +. +..+
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~----~~-~~~l 264 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL----AP-LSGL 264 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GG-GTTC
T ss_pred hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc----hh-hhcC
Confidence 22211 246666666666665544 55566666666666654432 2355566666666666543321 11 2222
Q ss_pred ccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhcc
Q 002299 788 AGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESL 867 (940)
Q Consensus 788 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~l 867 (940)
++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++..++.
T Consensus 265 -----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------- 326 (466)
T 1o6v_A 265 -----TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--------- 326 (466)
T ss_dssp -----TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---------
T ss_pred -----CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---------
Confidence 667777777765544332 5666777777777776655322 5666777777777776665442
Q ss_pred CccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 868 PSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 868 p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
+..+++|+.|++++|++.+. ..+.++++|+.|++++|.+
T Consensus 327 ---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 44678888888888877653 3577888888888888865
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.2e-25 Score=246.19 Aligned_cols=293 Identities=13% Similarity=0.073 Sum_probs=237.3
Q ss_pred eEEeChhhhccCCCcceEEEecCCCcccccCCCCC---CCCcceEEeCCCCCchhhhhhhccccccccccccccccccCC
Q 002299 547 EIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAP---FTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVN 623 (940)
Q Consensus 547 ~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~---~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~ 623 (940)
...+++..|..+++|++|++++|. +..++... ..+|++|++++|.+..+ .|..+.++++
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~ 118 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYL---------------PPHVFQNVPL 118 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTCTT
T ss_pred hhhCChhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCCCCcC---------------CHHHhcCCCC
Confidence 456788889999999999999984 34444422 38999999999988765 2456889999
Q ss_pred CceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCC
Q 002299 624 LKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGC 702 (940)
Q Consensus 624 L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~ 702 (940)
|++|+|++|.+....+. |..+++|++|++++|......+..+..+++|+.|++++|..... + ...+++|+.|++++|
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D-LSLIPSLFHANVSYN 196 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C-GGGCTTCSEEECCSS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c-cccccccceeecccc
Confidence 99999999987655555 78999999999999987777778899999999999999965443 2 235899999999998
Q ss_pred CCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCc
Q 002299 703 TSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPS 782 (940)
Q Consensus 703 ~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 782 (940)
.. ..++.. .+|++|++++|.++.+|... +++|+.|++++|.+... ..+..+++|++|++++|..... .|.
T Consensus 197 ~l-~~~~~~--~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~---~~~ 266 (390)
T 3o6n_A 197 LL-STLAIP--IAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI---MYH 266 (390)
T ss_dssp CC-SEEECC--SSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE---ESG
T ss_pred cc-cccCCC--CcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc---Chh
Confidence 53 333221 25999999999999887643 68999999999987664 4688899999999999865532 234
Q ss_pred chhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHH
Q 002299 783 CIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQ 862 (940)
Q Consensus 783 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 862 (940)
.+..+ ++|+.|++++|.+. .+|..+..+++|+.|++++|++.+ +|..+..+++|++|+|++|+++.+|
T Consensus 267 ~~~~l-----~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~----- 334 (390)
T 3o6n_A 267 PFVKM-----QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK----- 334 (390)
T ss_dssp GGTTC-----SSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC-----
T ss_pred Hcccc-----ccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC-----
Confidence 44444 89999999999765 467677889999999999999874 7777888999999999999988765
Q ss_pred hhhccCccccCCCCCCEEeccCCCCCc
Q 002299 863 LLESLPSSLYKSKCLQDSYLDDCPNLH 889 (940)
Q Consensus 863 l~~~lp~~~~~l~~L~~L~L~~n~~~~ 889 (940)
+..+++|+.|++++|++..
T Consensus 335 --------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 335 --------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp --------CCTTCCCSEEECCSSCEEH
T ss_pred --------chhhccCCEEEcCCCCccc
Confidence 4568899999999999865
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=5.3e-25 Score=258.53 Aligned_cols=328 Identities=19% Similarity=0.175 Sum_probs=231.2
Q ss_pred ccccCCcceEEeChhhhccCCCcceEEEecCCCcccccCCCC-CC--CCcceEEeCCCCCchh-hhhhhccccccccc--
Q 002299 539 LDMSNVSKEIHINPYTFSMMPELRFLKFYGQNKCMITHFEGA-PF--TDVRYFEWHKSPLKSL-NIRAENLVSLILPG-- 612 (940)
Q Consensus 539 l~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~-~~--~~L~~L~l~~~~l~~l-~l~~~~L~~l~l~~-- 612 (940)
++++.+. ...+.+..|.++++|++|++++|. +..++.. +. ++|++|++++|.++.+ .....+|+.+++++
T Consensus 57 L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 57 LSLSQNS-ISELRMPDISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFND 132 (562)
T ss_dssp EECCSSC-CCCCCGGGTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSC
T ss_pred EECCCCC-ccccChhhhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCCC
Confidence 3444443 446677889999999999999884 3444332 22 8899999999988877 11344555555554
Q ss_pred ----cccccccccCCCceeeCCCCCCCCcCCCcccCCCc--cEEeccCCCC--CccccccccCC----------------
Q 002299 613 ----RLWDDVQNLVNLKEIDLSDSKQLTKLPDLSLARNL--ESLDLWGCSS--LMETHSSIQYL---------------- 668 (940)
Q Consensus 613 ----~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L--~~L~L~~~~~--~~~~~~~~~~l---------------- 668 (940)
..|..+.++++|++|+|++|.+.. ..+..+++| ++|++++|.. ....|..+..+
T Consensus 133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~ 210 (562)
T 3a79_B 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210 (562)
T ss_dssp CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCC
T ss_pred ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchh
Confidence 335678889999999999887654 245555555 8888888766 44444333332
Q ss_pred ----------C-------------------------------------------------------cccEEEecCCCCCc
Q 002299 669 ----------N-------------------------------------------------------KLAFLYLVSCESLR 683 (940)
Q Consensus 669 ----------~-------------------------------------------------------~L~~L~l~~~~~~~ 683 (940)
+ +|++|++++|...+
T Consensus 211 ~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 290 (562)
T 3a79_B 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290 (562)
T ss_dssp CCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECS
T ss_pred hhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeec
Confidence 2 45555555554443
Q ss_pred ccCCcc------C--------------------------CCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcc-cC
Q 002299 684 SLPHTI------R--------------------------SESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEE-LP 730 (940)
Q Consensus 684 ~l~~~~------~--------------------------l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~-lp 730 (940)
.+|..+ . ..+|++|++++|............+|++|++++|.++. +|
T Consensus 291 ~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 370 (562)
T 3a79_B 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370 (562)
T ss_dssp CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT
T ss_pred cccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchh
Confidence 444432 0 13366666666653322111222369999999999996 67
Q ss_pred ccccccCCCcEEEecCCCCCc--ccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCcc
Q 002299 731 SSIECLYNLRSIDLLNCTRLE--YIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLES 808 (940)
Q Consensus 731 ~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 808 (940)
..+..+++|+.|++++|.+.+ .+|..+.++++|+.|++++|.....+|.. .+..+ ++|+.|++++|.+...
T Consensus 371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~~l-----~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR--TCAWA-----ESILVLNLSSNMLTGS 443 (562)
T ss_dssp TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC--CCCCC-----TTCCEEECCSSCCCGG
T ss_pred hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh--hhcCc-----ccCCEEECCCCCCCcc
Confidence 889999999999999998776 44567899999999999998765434421 12233 8999999999998777
Q ss_pred ccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCC
Q 002299 809 FPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNL 888 (940)
Q Consensus 809 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~ 888 (940)
.|..+. ++|+.|++++|.+. .+|..+..+++|++|+|++|+++.+|.. .+..+++|+.|+|++|++.
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~----------~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG----------VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT----------STTTCTTCCCEECCSCCBC
T ss_pred hhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH----------HHhcCCCCCEEEecCCCcC
Confidence 666543 79999999999887 5887778999999999999999887742 2668999999999999987
Q ss_pred cccC
Q 002299 889 HRLP 892 (940)
Q Consensus 889 ~~~p 892 (940)
...+
T Consensus 511 c~c~ 514 (562)
T 3a79_B 511 CTCP 514 (562)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 6433
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=9.6e-25 Score=247.53 Aligned_cols=285 Identities=16% Similarity=0.113 Sum_probs=157.0
Q ss_pred hhccCCCcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCC
Q 002299 554 TFSMMPELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSK 633 (940)
Q Consensus 554 ~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~ 633 (940)
.|..+++|++|++++|.. ..++.....+|++|++++|.+..+ + ++++++|++|++++|.
T Consensus 59 ~l~~l~~L~~L~Ls~n~l---~~~~~~~l~~L~~L~Ls~N~l~~~----------------~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNI---TTLDLSQNTNLTYLACDSNKLTNL----------------D--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp TGGGCTTCSEEECCSSCC---SCCCCTTCTTCSEEECCSSCCSCC----------------C--CTTCTTCCEEECCSSC
T ss_pred hhcccCCCCEEEccCCcC---CeEccccCCCCCEEECcCCCCcee----------------e--cCCCCcCCEEECCCCc
Confidence 355555555555555532 223322235555555555555432 1 4566667777777765
Q ss_pred CCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCc
Q 002299 634 QLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISS 713 (940)
Q Consensus 634 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 713 (940)
+.. +| ++.+++|++|++++|.... ++ ++.+++|+.|++++|...+.++ ...+++|+.|++++|. +..+|....
T Consensus 118 l~~-l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~-l~~l~l~~l 190 (457)
T 3bz5_A 118 LTK-LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK-ITELDVSQN 190 (457)
T ss_dssp CSC-CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC-CCCCCCTTC
T ss_pred CCe-ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc-cceeccccC
Confidence 443 33 6666777777777665443 22 5666677777777665554442 2346667777776664 333442222
Q ss_pred CCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccc--ccc
Q 002299 714 CFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEA--GIK 791 (940)
Q Consensus 714 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~ 791 (940)
.+|+.|++++|.++.++ +..+++|+.|++++|.+.+ +| +..+++|+.|++++|.... ++ +..+..+. ...
T Consensus 191 ~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCI 262 (457)
T ss_dssp TTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEecc
Confidence 35777777777766653 5666777777777766555 34 5666777777777664432 11 11111110 001
Q ss_pred CCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCc--------cCCCCCCCCEEEccCCCCccCchhHHHh
Q 002299 792 RQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPD--------ELGNLKALEELTVEGTAMREVPESLGQL 863 (940)
Q Consensus 792 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~l~~l~~L~~L~L~~n~l~~lp~~l~~l 863 (940)
..+|+.|++++|.....+| +..+++|+.|++++|...+.+|. .+..+++|++|++++|+++.++
T Consensus 263 ~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~------ 334 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD------ 334 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC------
T ss_pred CCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc------
Confidence 1244455555555544444 34566677777777665443332 1445566666666666665432
Q ss_pred hhccCccccCCCCCCEEeccCCCCCc
Q 002299 864 LESLPSSLYKSKCLQDSYLDDCPNLH 889 (940)
Q Consensus 864 ~~~lp~~~~~l~~L~~L~L~~n~~~~ 889 (940)
+.++++|+.|++++|++.+
T Consensus 335 -------l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 335 -------VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp -------CTTCTTCSEEECCSSCCCB
T ss_pred -------cccCCcCcEEECCCCCCCC
Confidence 3456667777777666543
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.3e-25 Score=258.68 Aligned_cols=293 Identities=13% Similarity=0.072 Sum_probs=238.4
Q ss_pred eEEeChhhhccCCCcceEEEecCCCcccccCCCCC---CCCcceEEeCCCCCchhhhhhhccccccccccccccccccCC
Q 002299 547 EIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAP---FTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVN 623 (940)
Q Consensus 547 ~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~---~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~ 623 (940)
...+++..|..+++|++|++++|.. ..++... ..+|++|++++|.+..+ .|..++++++
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~ 124 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYL---------------PPHVFQNVPL 124 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTCTT
T ss_pred CCCcCHHHHccCCCCcEEECCCCCC---CCCChHHhcCCCCCCEEECCCCcCCCC---------------CHHHHcCCCC
Confidence 4567888899999999999999854 4444322 38999999999988765 2456789999
Q ss_pred CceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCC
Q 002299 624 LKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGC 702 (940)
Q Consensus 624 L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~ 702 (940)
|++|+|++|.+...++. |+.+++|++|+|++|.+....|..+..+++|+.|++++|.... ++ ...+++|+.|++++|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~-~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD-LSLIPSLFHANVSYN 202 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC-GGGCTTCSEEECCSS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC-hhhhhhhhhhhcccC
Confidence 99999999987765555 7999999999999998888778889999999999999996544 33 235889999999998
Q ss_pred CCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCc
Q 002299 703 TSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPS 782 (940)
Q Consensus 703 ~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 782 (940)
.. ..++. ..+|+.|++++|.++.+|..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|..... .|.
T Consensus 203 ~l-~~l~~--~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~---~~~ 272 (597)
T 3oja_B 203 LL-STLAI--PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI---MYH 272 (597)
T ss_dssp CC-SEEEC--CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE---ESG
T ss_pred cc-ccccC--CchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC---CHH
Confidence 53 33322 125999999999999887654 4799999999998776 35688999999999999876533 244
Q ss_pred chhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHH
Q 002299 783 CIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQ 862 (940)
Q Consensus 783 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 862 (940)
.+..+ ++|+.|+|++|.+.. +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+..+|
T Consensus 273 ~~~~l-----~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~----- 340 (597)
T 3oja_B 273 PFVKM-----QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK----- 340 (597)
T ss_dssp GGTTC-----SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-----
T ss_pred HhcCc-----cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC-----
Confidence 45544 899999999997654 6777788999999999999988 47878888999999999999987665
Q ss_pred hhhccCccccCCCCCCEEeccCCCCCc
Q 002299 863 LLESLPSSLYKSKCLQDSYLDDCPNLH 889 (940)
Q Consensus 863 l~~~lp~~~~~l~~L~~L~L~~n~~~~ 889 (940)
+..+++|+.|+|++|++..
T Consensus 341 --------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 341 --------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp --------CCTTCCCSEEECCSSCEEH
T ss_pred --------hhhcCCCCEEEeeCCCCCC
Confidence 4468899999999999764
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=7.3e-24 Score=240.09 Aligned_cols=294 Identities=20% Similarity=0.192 Sum_probs=147.3
Q ss_pred CCcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcC
Q 002299 559 PELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKL 638 (940)
Q Consensus 559 ~~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 638 (940)
++|+.|++++|.. ..+|.. ..+|++|++++|.+..+.-.+ ++|++|++++|.+.. +
T Consensus 91 ~~L~~L~l~~n~l---~~lp~~-~~~L~~L~l~~n~l~~l~~~~-------------------~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 91 PHLESLVASCNSL---TELPEL-PQSLKSLLVDNNNLKALSDLP-------------------PLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp TTCSEEECCSSCC---SSCCCC-CTTCCEEECCSSCCSCCCSCC-------------------TTCCEEECCSSCCSS-C
T ss_pred CCCCEEEccCCcC---Cccccc-cCCCcEEECCCCccCcccCCC-------------------CCCCEEECcCCCCCC-C
Confidence 5666666666632 333322 256666666666665441111 355555555554433 4
Q ss_pred CCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccE
Q 002299 639 PDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKD 718 (940)
Q Consensus 639 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~ 718 (940)
|+++.+++|++|++++|... .+|..+ .+|++|++++|... .+|....+++|++|++++|.. ..+|... .+|++
T Consensus 147 p~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~-~l~~~~~l~~L~~L~l~~N~l-~~l~~~~-~~L~~ 219 (454)
T 1jl5_A 147 PELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSL-KKLPDLP-LSLES 219 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCC-SSCCCCC-TTCCE
T ss_pred cccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCC-cCccccCCCCCCEEECCCCcC-CcCCCCc-CcccE
Confidence 45555555556655555332 233322 35555555555332 244333455555555555542 2233322 23555
Q ss_pred EecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccc-------c--
Q 002299 719 LDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEA-------G-- 789 (940)
Q Consensus 719 L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------~-- 789 (940)
|++++|.++.+|. +..+++|+.|++++|.+.+ +|.. +++|+.|++++|... .+|..+..+..+. +
T Consensus 220 L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 220 IVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp EECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSEES
T ss_pred EECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc-ccCcccCcCCEEECcCCccCccc
Confidence 5555555555553 5555555555555554432 2221 245555555554322 1222110000000 0
Q ss_pred ccCCCceEEEcCCCCCCccccCccCCC-CCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccC
Q 002299 790 IKRQALSKLELNNCSRLESFPSSLCMF-ESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLP 868 (940)
Q Consensus 790 ~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp 868 (940)
...++|+.|++++|.+.. ++ .+ ++|+.|++++|.+.+ +|.. +++|+.|++++|.++.+|
T Consensus 294 ~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp----------- 353 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVP----------- 353 (454)
T ss_dssp CCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-----------
T ss_pred CcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccccc-----------
Confidence 000455666666654432 21 22 467777777777665 5543 467777777777776655
Q ss_pred ccccCCCCCCEEeccCCCCCc--ccCCCcCCc-------------hhhhhhhccCCccC
Q 002299 869 SSLYKSKCLQDSYLDDCPNLH--RLPDELGSL-------------EALKRLYAEGKCSD 912 (940)
Q Consensus 869 ~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l-------------~~L~~L~l~~n~~~ 912 (940)
. .+++|+.|++++|++.+ .+|..+..+ ++|+.|++++|.+.
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 2 36789999999999888 778888877 88999999998764
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=6.8e-24 Score=240.52 Aligned_cols=307 Identities=14% Similarity=0.081 Sum_probs=232.9
Q ss_pred hhccCCCcceEEEecCCCcccccCCCC-CCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCC
Q 002299 554 TFSMMPELRFLKFYGQNKCMITHFEGA-PFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDS 632 (940)
Q Consensus 554 ~f~~~~~Lr~L~l~~~~~~~i~~l~~~-~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~ 632 (940)
.+..+++|+.|++++|.. ..+|.. ..++|++|++++|.++.+ | ++.+++|++|++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l---~~~~~l~~l~~L~~L~Ls~n~l~~~----------------~--~~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNITTL----------------D--LSQNTNLTYLACDSN 95 (457)
T ss_dssp EHHHHTTCCEEECCSSCC---CCCTTGGGCTTCSEEECCSSCCSCC----------------C--CTTCTTCSEEECCSS
T ss_pred ChhHcCCCCEEEccCCCc---ccChhhcccCCCCEEEccCCcCCeE----------------c--cccCCCCCEEECcCC
Confidence 567889999999999844 444421 128999999999988764 2 678899999999999
Q ss_pred CCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCC
Q 002299 633 KQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKIS 712 (940)
Q Consensus 633 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~ 712 (940)
.+.. ++ ++.+++|++|++++|.... +| ++.+++|++|++++|.... ++ ...+++|++|++++|..+..++...
T Consensus 96 ~l~~-~~-~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~~~~ 168 (457)
T 3bz5_A 96 KLTN-LD-VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLDVTP 168 (457)
T ss_dssp CCSC-CC-CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCCCTT
T ss_pred CCce-ee-cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCccccccccc
Confidence 7655 44 8899999999999996554 44 8899999999999996654 43 3468999999999998777765444
Q ss_pred cCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 713 SCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 713 ~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
..+|++|++++|.++.+| +..+++|+.|++++|.+.+. .+..+++|+.|++++|.... +| +..+
T Consensus 169 l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-----~~~l----- 232 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-----VTPL----- 232 (457)
T ss_dssp CTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-----CTTC-----
T ss_pred CCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-----cccc-----
Confidence 457999999999999987 88899999999999887764 37889999999999986543 33 3333
Q ss_pred CCceEEEcCCCCCCccccCccCCCC-------CccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc-cCchhHHHhh
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFE-------SLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR-EVPESLGQLL 864 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 864 (940)
++|+.|++++|.+....+..+..+. +|+.|++++|...+.+| +..+++|+.|++++|... .+|..... +
T Consensus 233 ~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~-L 309 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAG-I 309 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCC-C
T ss_pred CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCc-c
Confidence 8999999999987664433333332 34555556665555555 467899999999999643 44432211 2
Q ss_pred hccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccC
Q 002299 865 ESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSD 912 (940)
Q Consensus 865 ~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 912 (940)
..+ .+.++++|+.|++++|++.+ ++ +.++++|+.|++++|.+.
T Consensus 310 ~~L--~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 310 TEL--DLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp SCC--CCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred eEe--chhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence 222 26678999999999999877 44 889999999999999763
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=6.8e-24 Score=231.29 Aligned_cols=291 Identities=14% Similarity=0.098 Sum_probs=163.9
Q ss_pred CcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCC
Q 002299 560 ELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLP 639 (940)
Q Consensus 560 ~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 639 (940)
+++.++++++ .+..+|......|++|++++|.++.+ .+..+.++++|++|+|++|.+....|
T Consensus 32 ~l~~l~~~~~---~l~~lp~~~~~~l~~L~L~~n~i~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (330)
T 1xku_A 32 HLRVVQCSDL---GLEKVPKDLPPDTALLDLQNNKITEI---------------KDGDFKNLKNLHTLILINNKISKISP 93 (330)
T ss_dssp ETTEEECTTS---CCCSCCCSCCTTCCEEECCSSCCCCB---------------CTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred CCeEEEecCC---CccccCccCCCCCeEEECCCCcCCEe---------------ChhhhccCCCCCEEECCCCcCCeeCH
Confidence 4556655554 33445544445555555555554433 11234455555555555554444433
Q ss_pred C-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCCcCCcc
Q 002299 640 D-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKISSCFLK 717 (940)
Q Consensus 640 ~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~L~ 717 (940)
. |..+++|++|++++|.. ..+|..+. ++|++|++++|......+..+ .+++ |+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------L~ 148 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ----------------------MI 148 (330)
T ss_dssp TTTTTCTTCCEEECCSSCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT----------------------CC
T ss_pred HHhcCCCCCCEEECCCCcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCcc----------------------cc
Confidence 2 55555555555555432 23333322 445555554443322211111 2333 55
Q ss_pred EEecCCCCCc---ccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 718 DLDLESCGIE---ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 718 ~L~L~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
+|++++|.++ ..+..+..+++|+.|++++|.+.. +|..+ .++|++|++++|..... .+..+..+ ++
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~---~~~~~~~l-----~~ 217 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKV---DAASLKGL-----NN 217 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEE---CTGGGTTC-----TT
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCcc---CHHHhcCC-----CC
Confidence 5555555554 234456667777777777765443 34333 26777777777654322 12333333 67
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCC
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKS 874 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l 874 (940)
|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|+++.+|..... . +......
T Consensus 218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~--~--~~~~~~~ 292 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC--P--PGYNTKK 292 (330)
T ss_dssp CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS--C--SSCCTTS
T ss_pred CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC--C--ccccccc
Confidence 777777777766666666777888888888888776 4777788888888888888888877642110 0 0011234
Q ss_pred CCCCEEeccCCCCCc--ccCCCcCCchhhhhhhccCC
Q 002299 875 KCLQDSYLDDCPNLH--RLPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 875 ~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~l~~n 909 (940)
++|+.|++++|++.. ..|..+..+++|+.+++++|
T Consensus 293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 678888888888753 44567888888888888887
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=4e-24 Score=233.21 Aligned_cols=288 Identities=14% Similarity=0.107 Sum_probs=166.5
Q ss_pred CcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCC
Q 002299 560 ELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLP 639 (940)
Q Consensus 560 ~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 639 (940)
+++.++++++ .+..+|....++|++|++++|.+..+ .+..+.++++|++|+|++|.+....|
T Consensus 34 ~l~~l~~~~~---~l~~ip~~~~~~l~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 34 HLRVVQCSDL---GLKAVPKEISPDTTLLDLQNNDISEL---------------RKDDFKGLQHLYALVLVNNKISKIHE 95 (332)
T ss_dssp ETTEEECCSS---CCSSCCSCCCTTCCEEECCSSCCCEE---------------CTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred cCCEEECCCC---CccccCCCCCCCCeEEECCCCcCCcc---------------CHhHhhCCCCCcEEECCCCccCccCH
Confidence 5777777766 34556666566777777777666543 13346666777777777776555544
Q ss_pred C-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCC--cCCCCCcC-
Q 002299 640 D-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLK--RFPKISSC- 714 (940)
Q Consensus 640 ~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~--~~~~~~~~- 714 (940)
. |..+++|++|++++|... .+|..+. ++|++|++++|......+..+ .+++|++|++++|.... ..+.....
T Consensus 96 ~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred hHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 3 666777777777766433 4454443 566677776664433222222 35566666665554311 11111111
Q ss_pred CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
+|++|++++|.++.+|..+. ++|+.|++++|.+.+..+..+..+ ++
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l--------------------------------~~ 218 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRY--------------------------------SK 218 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC--------------------------------TT
T ss_pred ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCC--------------------------------CC
Confidence 34455555555444444332 344444444444333333333333 55
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcc--cc
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSS--LY 872 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~--~~ 872 (940)
|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|+++.+|... +... ..
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~------~~~~~~~~ 291 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND------FCPVGFGV 291 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS------SSCSSCCS
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH------cccccccc
Confidence 666666666555555556677778888888888776 46777778888888888888887776321 1100 01
Q ss_pred CCCCCCEEeccCCCCC--cccCCCcCCchhhhhhhccCC
Q 002299 873 KSKCLQDSYLDDCPNL--HRLPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~--~~~p~~~~~l~~L~~L~l~~n 909 (940)
..++|+.|++++|++. ...|..+..+++|+.|++++|
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 2467888888888876 455667888888888888876
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=3e-24 Score=234.15 Aligned_cols=245 Identities=18% Similarity=0.151 Sum_probs=181.4
Q ss_pred CCCceeeCCCCCCCCcCC-CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEec
Q 002299 622 VNLKEIDLSDSKQLTKLP-DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLS 700 (940)
Q Consensus 622 ~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~ 700 (940)
++|++|+|++|.+....| .|..+++|++|++++|......|..+..+++|++|++++|... .
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~---------------- 116 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E---------------- 116 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-S----------------
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-c----------------
Confidence 455666666665444434 2555666666666665544444555555566666666555322 2
Q ss_pred CCCCCCcCCCCCcCCccEEecCCCCCcccCcc-ccccCCCcEEEecCCCCCc--ccccccCCCCCCcEEEecCCCCCCcC
Q 002299 701 GCTSLKRFPKISSCFLKDLDLESCGIEELPSS-IECLYNLRSIDLLNCTRLE--YIASSIFTLKSLESIRISKCSNLRKF 777 (940)
Q Consensus 701 ~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~ 777 (940)
+|.....+|++|++++|.++.+|.. +..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|....
T Consensus 117 -------l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-- 186 (332)
T 2ft3_A 117 -------IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-- 186 (332)
T ss_dssp -------CCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--
T ss_pred -------cCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--
Confidence 2322224588888999999988765 7889999999999998753 566677777 99999999976442
Q ss_pred CCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc
Q 002299 778 PEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 778 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+|
T Consensus 187 --l~~~~~-------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp 257 (332)
T 2ft3_A 187 --IPKDLP-------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP 257 (332)
T ss_dssp --CCSSSC-------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC
T ss_pred --cCcccc-------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC
Confidence 333221 78999999999888877788999999999999999999877778999999999999999988776
Q ss_pred hhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCC------chhhhhhhccCCccCC
Q 002299 858 ESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGS------LEALKRLYAEGKCSDR 913 (940)
Q Consensus 858 ~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~------l~~L~~L~l~~n~~~~ 913 (940)
. .+..+++|+.|++++|++....+..+.. .++|+.|++++|++..
T Consensus 258 ~-----------~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 258 A-----------GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp T-----------TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred h-----------hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 4 4567899999999999988765555544 4678999999998754
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1e-23 Score=229.95 Aligned_cols=266 Identities=15% Similarity=0.155 Sum_probs=178.7
Q ss_pred CCcceEEEecCCCcccccCCCCC---CCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCC
Q 002299 559 PELRFLKFYGQNKCMITHFEGAP---FTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQL 635 (940)
Q Consensus 559 ~~Lr~L~l~~~~~~~i~~l~~~~---~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~ 635 (940)
++|+.|++++|. +..++... .++|++|++++|.+..+ .|..+.++++|++|+|++|.+.
T Consensus 52 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~l~ 113 (330)
T 1xku_A 52 PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKI---------------SPGAFAPLVKLERLYLSKNQLK 113 (330)
T ss_dssp TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCB---------------CTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCcCCee---------------CHHHhcCCCCCCEEECCCCcCC
Confidence 689999999984 44555432 38999999999988754 3667899999999999999765
Q ss_pred CcCC-CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCc--ccCCcc-CCCCCCEEEecCCCCCCcCCCC
Q 002299 636 TKLP-DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLR--SLPHTI-RSESLFELRLSGCTSLKRFPKI 711 (940)
Q Consensus 636 ~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~~-~l~~L~~L~l~~~~~l~~~~~~ 711 (940)
.+| .+. ++|++|++++|......+..+..+++|+.|++++|.... ..+..+ .+++|++|++++
T Consensus 114 -~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~---------- 180 (330)
T 1xku_A 114 -ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD---------- 180 (330)
T ss_dssp -BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS----------
T ss_pred -ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC----------
Confidence 444 343 899999999998777777779999999999999996643 233322 355555555555
Q ss_pred CcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhcccccc
Q 002299 712 SSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIK 791 (940)
Q Consensus 712 ~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 791 (940)
|.++.+|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|......+ ..+..+
T Consensus 181 ------------n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l---- 239 (330)
T 1xku_A 181 ------------TNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN---GSLANT---- 239 (330)
T ss_dssp ------------SCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT---TTGGGS----
T ss_pred ------------CccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh---hhccCC----
Confidence 44444444332 556666666665555555556666666666666654332211 122222
Q ss_pred CCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCC------CCCCCEEEccCCCCccCchhHHHhhh
Q 002299 792 RQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGN------LKALEELTVEGTAMREVPESLGQLLE 865 (940)
Q Consensus 792 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------l~~L~~L~L~~n~l~~lp~~l~~l~~ 865 (940)
++|+.|++++|.+. .+|..+..+++|++|++++|++.+..+..+.. .++|+.|++++|++... .
T Consensus 240 -~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~--------~ 309 (330)
T 1xku_A 240 -PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--------E 309 (330)
T ss_dssp -TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG--------G
T ss_pred -CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc--------c
Confidence 66777777777544 56666777888888888888877644444432 47888999999987631 1
Q ss_pred ccCccccCCCCCCEEeccCCC
Q 002299 866 SLPSSLYKSKCLQDSYLDDCP 886 (940)
Q Consensus 866 ~lp~~~~~l~~L~~L~L~~n~ 886 (940)
..|..|..+++|+.++|++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 123557778889999998874
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.5e-24 Score=233.92 Aligned_cols=249 Identities=19% Similarity=0.199 Sum_probs=201.1
Q ss_pred CCCceeeCCCCCCCC--cCC-CcccCCCccEEeccC-CCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCE
Q 002299 622 VNLKEIDLSDSKQLT--KLP-DLSLARNLESLDLWG-CSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFE 696 (940)
Q Consensus 622 ~~L~~L~L~~~~~~~--~~~-~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~ 696 (940)
.+++.|+|++|.+.. .+| .+..+++|++|++++ |.....+|..+..+++|++|++++|.....+|..+ .+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--- 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT--- 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT---
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC---
Confidence 578889999988775 555 488889999999985 76777888888888899999998887665666544 3444
Q ss_pred EEecCCCCCCcCCCCCcCCccEEecCCCCCc-ccCccccccCCCcEEEecCCCCCcccccccCCCC-CCcEEEecCCCCC
Q 002299 697 LRLSGCTSLKRFPKISSCFLKDLDLESCGIE-ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLK-SLESIRISKCSNL 774 (940)
Q Consensus 697 L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 774 (940)
|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..++ +|+.|++++|...
T Consensus 127 -------------------L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 127 -------------------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp -------------------CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred -------------------CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 555666666666 6777888999999999999988878888888887 8999999998655
Q ss_pred CcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc
Q 002299 775 RKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
... |..+..+ . |+.|++++|.+....|..+..+++|+.|++++|.+.+.+|. +..+++|++|+|++|.+.
T Consensus 188 ~~~---~~~~~~l-----~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 188 GKI---PPTFANL-----N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp EEC---CGGGGGC-----C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred ccC---ChHHhCC-----c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence 333 4444433 4 99999999988888888899999999999999999876554 888999999999999986
Q ss_pred cCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCC
Q 002299 855 EVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 855 ~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 913 (940)
+.+|..+..+++|+.|+|++|++.+.+|.. ..+++|+.|++++|+.-+
T Consensus 258 ----------~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 258 ----------GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ----------ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred ----------CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 223456678999999999999999888886 899999999999997543
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=3.1e-23 Score=224.84 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=105.6
Q ss_pred CCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEec
Q 002299 622 VNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLS 700 (940)
Q Consensus 622 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~ 700 (940)
.+++.|+|++|.+...++.+..+++|++|+|++|.+. .+|..++.+++|++|++++|... .+|..+ .+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3444444444443322223444444444444444333 44444444444444444444332 333332 34444444444
Q ss_pred CCCCCCcCCCCC-----------cCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEec
Q 002299 701 GCTSLKRFPKIS-----------SCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRIS 769 (940)
Q Consensus 701 ~~~~l~~~~~~~-----------~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 769 (940)
+|.....+|... ..+|++|++++|.++.+|..+..+++|+.|++++|.+.+ +|..+..+++|+.|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECc
Confidence 444444433321 113555555555555555555566666666666655443 33345555555555555
Q ss_pred CCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEcc
Q 002299 770 KCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVE 849 (940)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~ 849 (940)
+|+....+|. .+..+ ++|+.|++++|...+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++.
T Consensus 238 ~n~~~~~~p~---~~~~l-----~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 238 GCTALRNYPP---IFGGR-----APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCTTCCBCCC---CTTCC-----CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCcchhhhHH---HhcCC-----CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 5554433322 22222 455555555555555555555555555555555555555555555555555555555
Q ss_pred CCCC
Q 002299 850 GTAM 853 (940)
Q Consensus 850 ~n~l 853 (940)
.+.+
T Consensus 310 ~~~~ 313 (328)
T 4fcg_A 310 PHLQ 313 (328)
T ss_dssp GGGS
T ss_pred HHHH
Confidence 4433
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=2.3e-24 Score=232.40 Aligned_cols=252 Identities=16% Similarity=0.148 Sum_probs=189.8
Q ss_pred CcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCC-CCCCCcCCC-cccCCCccEEeccCCCCCccc
Q 002299 584 DVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSD-SKQLTKLPD-LSLARNLESLDLWGCSSLMET 661 (940)
Q Consensus 584 ~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~-~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~ 661 (940)
+++.|+++++.+... ..+|..+.++++|++|+|++ |.+...+|. |..+++|++|++++|.+...+
T Consensus 51 ~l~~L~L~~~~l~~~-------------~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKP-------------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CEEEEEEECCCCSSC-------------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred eEEEEECCCCCccCC-------------cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC
Confidence 466666666655420 04588899999999999995 777777774 999999999999999888899
Q ss_pred cccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCc-ccCccccccC-C
Q 002299 662 HSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIE-ELPSSIECLY-N 738 (940)
Q Consensus 662 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~-~lp~~~~~l~-~ 738 (940)
|..+..+++|++|++++|.....+|..+ .+++|+ +|++++|.++ .+|..+..++ +
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----------------------~L~L~~N~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV----------------------GITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC----------------------EEECCSSCCEEECCGGGGCCCTT
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC----------------------eEECcCCcccCcCCHHHhhhhhc
Confidence 9999999999999999997766666654 355554 4555555555 5666677776 7
Q ss_pred CcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCC
Q 002299 739 LRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFES 818 (940)
Q Consensus 739 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~ 818 (940)
|+.|++++|.+.+..|..+..++ |+.|++++|..... .|..+..+ ++|+.|++++|.+....|. +..+++
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~---~~~~~~~l-----~~L~~L~L~~N~l~~~~~~-~~~l~~ 245 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD---ASVLFGSD-----KNTQKIHLAKNSLAFDLGK-VGLSKN 245 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC---CGGGCCTT-----SCCSEEECCSSEECCBGGG-CCCCTT
T ss_pred CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc---CCHHHhcC-----CCCCEEECCCCceeeecCc-ccccCC
Confidence 77777777777767777777766 77777777654422 23333333 7788888888876655555 778899
Q ss_pred ccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc-cCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC
Q 002299 819 LASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR-EVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 819 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
|++|++++|.+.+.+|..+..+++|++|+|++|+++ .+| .. ..+++|+.|++++|+.+...|
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-----------~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-----------QG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-----------CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC-----------CC-ccccccChHHhcCCCCccCCC
Confidence 999999999998788989999999999999999875 333 33 568889999999998554333
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=6.1e-23 Score=245.77 Aligned_cols=333 Identities=17% Similarity=0.164 Sum_probs=226.1
Q ss_pred CCcceEEEecCCCcccccCCCCCC---CCcceEEeCCCCCchhh---hh-hhccccccccc----ccc-ccccccCCCce
Q 002299 559 PELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSPLKSLN---IR-AENLVSLILPG----RLW-DDVQNLVNLKE 626 (940)
Q Consensus 559 ~~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~l~~l~---l~-~~~L~~l~l~~----~l~-~~~~~l~~L~~ 626 (940)
++++.|+|++|. |..++...+ ++|++|++++|.++.+. |. ..+|+.+++++ .+| ..|.++++|++
T Consensus 52 ~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 479999999994 456655433 89999999999998872 32 35666666665 333 45788899999
Q ss_pred eeCCCCCCCCcCCC-cccCCCccEEeccCCCCCc-cccccccCCCcccEEEecCCCCCcccCCcc---------------
Q 002299 627 IDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLM-ETHSSIQYLNKLAFLYLVSCESLRSLPHTI--------------- 689 (940)
Q Consensus 627 L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~--------------- 689 (940)
|+|++|++....+. |+.+++|++|++++|.... ..|..++.+++|++|++++|......+..+
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 99999876655554 8888999999999886654 456778888999999998886544322211
Q ss_pred -------------CCCCCCEEEecCCCC------------------------------CCcC------------------
Q 002299 690 -------------RSESLFELRLSGCTS------------------------------LKRF------------------ 708 (940)
Q Consensus 690 -------------~l~~L~~L~l~~~~~------------------------------l~~~------------------ 708 (940)
....+..+++.+|.. +...
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 011122233322210 0000
Q ss_pred ---------------------------------CC-CCcCCccEEecCCCCCcccCc--------------------ccc
Q 002299 709 ---------------------------------PK-ISSCFLKDLDLESCGIEELPS--------------------SIE 734 (940)
Q Consensus 709 ---------------------------------~~-~~~~~L~~L~L~~~~i~~lp~--------------------~~~ 734 (940)
+. .....++.|++.+|.+..++. ...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 00 000125556665554443221 123
Q ss_pred ccCCCcEEEecCCCCCcc--cccccCCCCCCcEEEecCC-----------------------CCCCcCCCCCcchhcccc
Q 002299 735 CLYNLRSIDLLNCTRLEY--IASSIFTLKSLESIRISKC-----------------------SNLRKFPEIPSCIIDEAG 789 (940)
Q Consensus 735 ~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-----------------------~~~~~~~~~~~~~~~~~~ 789 (940)
.+++|+.|++++|.+... .+..+..+.+|+.|++..| +.....+ +..+.
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~---- 442 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFL---- 442 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS--SCTTT----
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc--ccccc----
Confidence 567888888888765432 2223334445555555443 2221111 11122
Q ss_pred ccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCC-CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccC
Q 002299 790 IKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLD-GLPDELGNLKALEELTVEGTAMREVPESLGQLLESLP 868 (940)
Q Consensus 790 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp 868 (940)
.+++|+.++++.|......+..+..+++|+.|++++|.... ..|..+..+++|++|+|++|+++.++ |
T Consensus 443 -~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~----------~ 511 (635)
T 4g8a_A 443 -SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS----------P 511 (635)
T ss_dssp -TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC----------T
T ss_pred -cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC----------h
Confidence 23789999999998888888888999999999999998655 46788999999999999999998765 4
Q ss_pred ccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 869 SSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 869 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
..|.++++|+.|+|++|++.+..|..+.++++|+.|++++|.+
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 6678899999999999999887788899999999999999965
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=4.5e-22 Score=231.97 Aligned_cols=270 Identities=18% Similarity=0.175 Sum_probs=207.5
Q ss_pred CCcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcC
Q 002299 559 PELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKL 638 (940)
Q Consensus 559 ~~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 638 (940)
.+++.|++++| .+..+|....++|++|++++|.++.+ |. .+++|++|+|++|.+. .+
T Consensus 40 ~~l~~L~ls~n---~L~~lp~~l~~~L~~L~L~~N~l~~l----------------p~---~l~~L~~L~Ls~N~l~-~l 96 (622)
T 3g06_A 40 NGNAVLNVGES---GLTTLPDCLPAHITTLVIPDNNLTSL----------------PA---LPPELRTLEVSGNQLT-SL 96 (622)
T ss_dssp HCCCEEECCSS---CCSCCCSCCCTTCSEEEECSCCCSCC----------------CC---CCTTCCEEEECSCCCS-CC
T ss_pred CCCcEEEecCC---CcCccChhhCCCCcEEEecCCCCCCC----------------CC---cCCCCCEEEcCCCcCC-cC
Confidence 35788888887 45677777778999999999988765 33 4688999999999754 45
Q ss_pred CCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccE
Q 002299 639 PDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKD 718 (940)
Q Consensus 639 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~ 718 (940)
|. .+++|++|++++|.+ ..+|. .+++|+.|++++|.. ..+|.. +++|++|++++|. +..+|... .+|+.
T Consensus 97 p~--~l~~L~~L~Ls~N~l-~~l~~---~l~~L~~L~L~~N~l-~~lp~~--l~~L~~L~Ls~N~-l~~l~~~~-~~L~~ 165 (622)
T 3g06_A 97 PV--LPPGLLELSIFSNPL-THLPA---LPSGLCKLWIFGNQL-TSLPVL--PPGLQELSVSDNQ-LASLPALP-SELCK 165 (622)
T ss_dssp CC--CCTTCCEEEECSCCC-CCCCC---CCTTCCEEECCSSCC-SCCCCC--CTTCCEEECCSSC-CSCCCCCC-TTCCE
T ss_pred CC--CCCCCCEEECcCCcC-CCCCC---CCCCcCEEECCCCCC-CcCCCC--CCCCCEEECcCCc-CCCcCCcc-CCCCE
Confidence 55 778999999999854 44554 678899999999854 456653 5899999999985 44555533 35999
Q ss_pred EecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEE
Q 002299 719 LDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKL 798 (940)
Q Consensus 719 L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 798 (940)
|++++|.++.+| ..+++|+.|++++|.+.+ +|.. +++|+.|++++|... .+|.. + ++|+.|
T Consensus 166 L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~--------~~L~~L 226 (622)
T 3g06_A 166 LWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---P--------SGLKEL 226 (622)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---C--------TTCCEE
T ss_pred EECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---C--------CCCCEE
Confidence 999999999998 457899999999987654 4442 578999999987543 33322 1 789999
Q ss_pred EcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCC
Q 002299 799 ELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQ 878 (940)
Q Consensus 799 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~ 878 (940)
++++|.+.. +| ..+++|+.|++++|.+.. +|. .+++|+.|+|++|.++.+|. .+.++++|+
T Consensus 227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~lp~-----------~l~~l~~L~ 287 (622)
T 3g06_A 227 IVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRLPE-----------SLIHLSSET 287 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSCCG-----------GGGGSCTTC
T ss_pred EccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcCCH-----------HHhhccccC
Confidence 999996654 55 456899999999998874 665 57899999999999877664 455789999
Q ss_pred EEeccCCCCCcccCCCcCCchh
Q 002299 879 DSYLDDCPNLHRLPDELGSLEA 900 (940)
Q Consensus 879 ~L~L~~n~~~~~~p~~~~~l~~ 900 (940)
.|+|++|++.+..|..+..++.
T Consensus 288 ~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 288 TVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp EEECCSCCCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCCcCHHHHHhccc
Confidence 9999999998877765554443
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=6.8e-22 Score=223.89 Aligned_cols=304 Identities=18% Similarity=0.166 Sum_probs=162.5
Q ss_pred CCCcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhh-h-hhhccccccccc----cccccccccCCCceeeCCC
Q 002299 558 MPELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLN-I-RAENLVSLILPG----RLWDDVQNLVNLKEIDLSD 631 (940)
Q Consensus 558 ~~~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~-l-~~~~L~~l~l~~----~l~~~~~~l~~L~~L~L~~ 631 (940)
+++|+.|++++|... .++.. ..+|++|++++|.++.+. + ...+|+.+++.+ .+|.. ..+|++|++++
T Consensus 110 ~~~L~~L~l~~n~l~---~l~~~-~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~ 182 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLK---ALSDL-PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGN 182 (454)
T ss_dssp CTTCCEEECCSSCCS---CCCSC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred cCCCcEEECCCCccC---cccCC-CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcC
Confidence 489999999998543 33322 278999999999988761 1 112333444333 12221 23566666666
Q ss_pred CCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCC
Q 002299 632 SKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKI 711 (940)
Q Consensus 632 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~ 711 (940)
|.+.. +|+++.+++|++|++++|.... +|.. .++|+.|++++|... .+|....+++|++|++++|.. ..+|..
T Consensus 183 n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l-~~l~~~ 255 (454)
T 1jl5_A 183 NQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLL-KTLPDL 255 (454)
T ss_dssp SCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCC-SSCCSC
T ss_pred CcCCc-CccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcC-Cccccc
Confidence 65433 4556666666666666664332 3322 236666666666433 555444566677777766543 334433
Q ss_pred CcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhcccccc
Q 002299 712 SSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIK 791 (940)
Q Consensus 712 ~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 791 (940)
. .+|++|++++|.++.+|.. +++|+.|++++|.+.+ +|.. .++|+.|++++|... .++..|
T Consensus 256 ~-~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~-~i~~~~---------- 316 (454)
T 1jl5_A 256 P-PSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIR-SLCDLP---------- 316 (454)
T ss_dssp C-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCS-EECCCC----------
T ss_pred c-cccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCC-cccCCc----------
Confidence 2 3467777777776666653 3667777777765543 2211 256777777766433 222211
Q ss_pred CCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc---hhHHHh-----
Q 002299 792 RQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP---ESLGQL----- 863 (940)
Q Consensus 792 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp---~~l~~l----- 863 (940)
++|+.|++++|.+.. +|.. +++|+.|++++|.+.. +|. .+++|++|++++|++..+| .++..+
T Consensus 317 -~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 317 -PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp -TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred -CcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 589999999997764 5653 6899999999999875 776 4789999999999998744 333222
Q ss_pred hhccCccccCCCCCCEEeccCCCCCc--ccCCCcCCchhhhhhhccCCccC
Q 002299 864 LESLPSSLYKSKCLQDSYLDDCPNLH--RLPDELGSLEALKRLYAEGKCSD 912 (940)
Q Consensus 864 ~~~lp~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~ 912 (940)
.+.+|. .+++|+.|++++|++.+ .+|. +|+.|.+.+|...
T Consensus 388 ~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 388 LAEVPE---LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVV 429 (454)
T ss_dssp ---------------------------------------------------
T ss_pred cccccc---ccCcCCEEECCCCcCCccccchh------hHhheeCcCcccC
Confidence 122222 13889999999999876 4553 4566667776543
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=2.7e-22 Score=217.50 Aligned_cols=205 Identities=25% Similarity=0.332 Sum_probs=162.2
Q ss_pred cccccccCCCceeeCCCCCCCCcCC-CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccC---
Q 002299 615 WDDVQNLVNLKEIDLSDSKQLTKLP-DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIR--- 690 (940)
Q Consensus 615 ~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~--- 690 (940)
|..+.++++|++|+|++|.+. .+| .++.+++|++|+|++|.+. .+|..+..+++|++|++++|...+.+|..+.
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 455666777777777777655 444 3777777777777777544 6677777777777777777767777766542
Q ss_pred -------CCCCCEEEecCCCCCCcCCCCCcC--CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCC
Q 002299 691 -------SESLFELRLSGCTSLKRFPKISSC--FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLK 761 (940)
Q Consensus 691 -------l~~L~~L~l~~~~~l~~~~~~~~~--~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 761 (940)
+++|++|++++|... .+|..... +|++|++++|.++.+|..+..+++|+.|++++|++.+.+|..+.+++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 778888888877533 55543322 68999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCC
Q 002299 762 SLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRL 830 (940)
Q Consensus 762 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 830 (940)
+|+.|++++|+..+.+| ..+..+ ++|+.|+|++|+..+.+|..+..+++|+.+.+..+.+.
T Consensus 254 ~L~~L~L~~n~~~~~~p---~~~~~l-----~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLP---LDIHRL-----TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCEEECTTCTTCCBCC---TTGGGC-----TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCEEECCCCCchhhcc---hhhhcC-----CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999998886555 445555 99999999999999999999999999999999876543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=4.1e-22 Score=214.64 Aligned_cols=181 Identities=19% Similarity=0.167 Sum_probs=119.9
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccc-cccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIA-SSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
|++|++++|.++.+|..+..+++|+.|++++|.+....+ ..+..+++|++|++++|......+ ..+..+ ++
T Consensus 80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l-----~~ 151 (306)
T 2z66_A 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGL-----SS 151 (306)
T ss_dssp CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST---TTTTTC-----TT
T ss_pred cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch---hhcccC-----cC
Confidence 455555555555556556666666666666665544333 345666667777776665432222 222222 67
Q ss_pred ceEEEcCCCCCCc-cccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccC
Q 002299 795 LSKLELNNCSRLE-SFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYK 873 (940)
Q Consensus 795 L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~ 873 (940)
|++|++++|.+.. ..|..+..+++|+.|++++|.+.+..|..+..+++|++|+|++|.++.++. ..+..
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------~~~~~ 221 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----------FPYKC 221 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS----------GGGTT
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh----------hhccC
Confidence 7777777776554 466677778888888888887777667777778888888888887776552 23556
Q ss_pred CCCCCEEeccCCCCCcccCCCcCCch-hhhhhhccCCccCCC
Q 002299 874 SKCLQDSYLDDCPNLHRLPDELGSLE-ALKRLYAEGKCSDRS 914 (940)
Q Consensus 874 l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~ 914 (940)
+++|+.|+|++|++.+..|..+..++ +|+.|++++|.+.+.
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 77888888888887777777777774 788888888876554
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=1.2e-21 Score=223.30 Aligned_cols=225 Identities=20% Similarity=0.170 Sum_probs=108.3
Q ss_pred CCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCC-CCc--CCccEEe
Q 002299 645 RNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPK-ISS--CFLKDLD 720 (940)
Q Consensus 645 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~-~~~--~~L~~L~ 720 (940)
++|++|+|++|.+....+..+.++++|+.|++++|.+....+..+ ++++|++|+|++|... .++. .+. .+|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence 456666666655555445556666666666666654433332222 2333333333333211 1111 000 1244444
Q ss_pred cCCCCCcccCc-cccccCCCcEEEecCCCCCccccc-ccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEE
Q 002299 721 LESCGIEELPS-SIECLYNLRSIDLLNCTRLEYIAS-SIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKL 798 (940)
Q Consensus 721 L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 798 (940)
|++|.++.+|. .+..+++|+.|++++|+.++.++. .+.++++|+.|+++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~----------------------------- 204 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG----------------------------- 204 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT-----------------------------
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC-----------------------------
Confidence 44444444443 244555555555555444443332 24444445555554
Q ss_pred EcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCC
Q 002299 799 ELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQ 878 (940)
Q Consensus 799 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~ 878 (940)
+|.+.. +| .+..+++|+.|+|++|.+.+..|..+.++++|+.|+|++|.+..++ |..|.++++|+
T Consensus 205 ---~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~ 269 (452)
T 3zyi_A 205 ---MCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE----------RNAFDGLASLV 269 (452)
T ss_dssp ---TSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC----------TTTTTTCTTCC
T ss_pred ---CCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC----------HHHhcCCCCCC
Confidence 443322 22 2445555555555555555544555555555555555555554433 23344555566
Q ss_pred EEeccCCCCCcccCCCcCCchhhhhhhccCCccCCC
Q 002299 879 DSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRS 914 (940)
Q Consensus 879 ~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 914 (940)
.|+|++|++....+..+..+++|+.|++++|++.|+
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 666665555544444555556666666666655443
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=3.8e-21 Score=224.22 Aligned_cols=258 Identities=21% Similarity=0.231 Sum_probs=208.1
Q ss_pred CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCcccc
Q 002299 583 TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETH 662 (940)
Q Consensus 583 ~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 662 (940)
..+++|+++++.++.+ |..+. ++|++|+|++|.+. .+|. .+++|++|+|++|. +..+|
T Consensus 40 ~~l~~L~ls~n~L~~l----------------p~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~-l~~lp 97 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL----------------PDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQ-LTSLP 97 (622)
T ss_dssp HCCCEEECCSSCCSCC----------------CSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCC-CSCCC
T ss_pred CCCcEEEecCCCcCcc----------------ChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCc-CCcCC
Confidence 3578899999888865 55444 79999999999755 5665 67999999999996 44566
Q ss_pred ccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEE
Q 002299 663 SSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSI 742 (940)
Q Consensus 663 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 742 (940)
. .+++|++|++++|.. ..+|. .+++|+.|++++|. +..+|... .+|++|++++|.++.+|. .+++|+.|
T Consensus 98 ~---~l~~L~~L~Ls~N~l-~~l~~--~l~~L~~L~L~~N~-l~~lp~~l-~~L~~L~Ls~N~l~~l~~---~~~~L~~L 166 (622)
T 3g06_A 98 V---LPPGLLELSIFSNPL-THLPA--LPSGLCKLWIFGNQ-LTSLPVLP-PGLQELSVSDNQLASLPA---LPSELCKL 166 (622)
T ss_dssp C---CCTTCCEEEECSCCC-CCCCC--CCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred C---CCCCCCEEECcCCcC-CCCCC--CCCCcCEEECCCCC-CCcCCCCC-CCCCEEECcCCcCCCcCC---ccCCCCEE
Confidence 5 789999999999854 45665 67899999999986 55566644 469999999999999886 35789999
Q ss_pred EecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEE
Q 002299 743 DLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASL 822 (940)
Q Consensus 743 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 822 (940)
++++|.+.. +| ..+++|+.|++++|... .+|.. + ++|+.|++++|.+. .+|. .+++|+.|
T Consensus 167 ~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~~---~--------~~L~~L~L~~N~l~-~l~~---~~~~L~~L 226 (622)
T 3g06_A 167 WAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPTL---P--------SELYKLWAYNNRLT-SLPA---LPSGLKEL 226 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCC---C--------TTCCEEECCSSCCS-SCCC---CCTTCCEE
T ss_pred ECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCCc---c--------chhhEEECcCCccc-ccCC---CCCCCCEE
Confidence 999987665 55 45789999999997643 33332 2 78999999999765 4554 35899999
Q ss_pred eeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhh
Q 002299 823 KIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALK 902 (940)
Q Consensus 823 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 902 (940)
++++|.+.+ +| ..+++|+.|+|++|.++.+|. .+++|+.|+|++|.+. .+|..+.++++|+
T Consensus 227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~--------------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 227 IVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM--------------LPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC--------------CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred EccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc--------------ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 999998876 66 456899999999999988773 4688999999999877 6798999999999
Q ss_pred hhhccCCccC
Q 002299 903 RLYAEGKCSD 912 (940)
Q Consensus 903 ~L~l~~n~~~ 912 (940)
.|++++|++.
T Consensus 288 ~L~L~~N~l~ 297 (622)
T 3g06_A 288 TVNLEGNPLS 297 (622)
T ss_dssp EEECCSCCCC
T ss_pred EEEecCCCCC
Confidence 9999999764
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=221.28 Aligned_cols=225 Identities=20% Similarity=0.190 Sum_probs=104.2
Q ss_pred CCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCC-CC--cCCccEEe
Q 002299 645 RNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPK-IS--SCFLKDLD 720 (940)
Q Consensus 645 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~-~~--~~~L~~L~ 720 (940)
++++.|+|++|.+....+..+.++++|+.|++++|......+..+ ++++|++|+|++|.. ..++. .+ ..+|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC-SSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC-CeeCHhHhhccccCceee
Confidence 445555555554444444455555555555555553322222222 233333333333211 11110 00 01244444
Q ss_pred cCCCCCcccCc-cccccCCCcEEEecCCCCCccccc-ccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEE
Q 002299 721 LESCGIEELPS-SIECLYNLRSIDLLNCTRLEYIAS-SIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKL 798 (940)
Q Consensus 721 L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 798 (940)
|++|.++.+|. .+..+++|+.|++++|+..+.++. .+.++++|+.|++++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~---------------------------- 194 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM---------------------------- 194 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT----------------------------
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC----------------------------
Confidence 44455554443 245555555555555444443333 344455555555555
Q ss_pred EcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCC
Q 002299 799 ELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQ 878 (940)
Q Consensus 799 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~ 878 (940)
|.+. .+|. +..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.+..++ +..|.++++|+
T Consensus 195 ----n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~ 258 (440)
T 3zyj_A 195 ----CNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE----------RNAFDNLQSLV 258 (440)
T ss_dssp ----SCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC----------TTSSTTCTTCC
T ss_pred ----CcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC----------hhhhcCCCCCC
Confidence 4322 2222 444555555555555555444555555555555555555554433 23344555555
Q ss_pred EEeccCCCCCcccCCCcCCchhhhhhhccCCccCCC
Q 002299 879 DSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRS 914 (940)
Q Consensus 879 ~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 914 (940)
.|+|++|++....+..+..+++|+.|++++|++.|+
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 555555555544444455555555555555555443
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=220.22 Aligned_cols=255 Identities=18% Similarity=0.122 Sum_probs=162.9
Q ss_pred CCceeeCCCCCCCCcCC-CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCc-c-CCCCCCEEEe
Q 002299 623 NLKEIDLSDSKQLTKLP-DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHT-I-RSESLFELRL 699 (940)
Q Consensus 623 ~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~-~l~~L~~L~l 699 (940)
+|++|++++|.+....+ .+..+++|++|++++|......+..+.++++|++|++++|... .+|.. + .++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~------- 124 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS------- 124 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCT-------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCc-------
Confidence 45555555554433333 2455555555555555443333444455555555555554322 12211 1 122
Q ss_pred cCCCCCCcCCCCCcCCccEEecCCCCCcccCc--cccccCCCcEEEecCCCCCcc-cccccCCCCCCcEEEecCCCCCCc
Q 002299 700 SGCTSLKRFPKISSCFLKDLDLESCGIEELPS--SIECLYNLRSIDLLNCTRLEY-IASSIFTLKSLESIRISKCSNLRK 776 (940)
Q Consensus 700 ~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 776 (940)
+|++|++++|.++.+|. .+..+++|+.|++++|...+. .+..+.++++|++|++++|.....
T Consensus 125 ---------------~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 125 ---------------SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp ---------------TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred ---------------cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 47777777777777776 577888899999988854444 456678888889999988765533
Q ss_pred CCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccC---CCCCCCCEEEccCCCC
Q 002299 777 FPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDEL---GNLKALEELTVEGTAM 853 (940)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~n~l 853 (940)
. |..+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ...+.++.++++++.+
T Consensus 190 ~---~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 190 E---PKSLKSI-----QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp C---TTTTTTC-----SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred C---HHHHhcc-----ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 2 3334434 788899998887643333334457889999999998876443332 3467788899998877
Q ss_pred ccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCC-cCCchhhhhhhccCCccCCCc
Q 002299 854 REVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDE-LGSLEALKRLYAEGKCSDRST 915 (940)
Q Consensus 854 ~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~ 915 (940)
.... +..+|..+..+++|+.|+|++|++.. +|.. +..+++|+.|++++|++.+.+
T Consensus 262 ~~~~------l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 262 TDES------LFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CHHH------HHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCcc------hhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 6321 33456667788999999999998774 5654 588999999999999876643
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=5.9e-22 Score=218.03 Aligned_cols=277 Identities=17% Similarity=0.165 Sum_probs=180.2
Q ss_pred CCcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcC
Q 002299 559 PELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKL 638 (940)
Q Consensus 559 ~~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 638 (940)
+.....+.+++ .+..+|.....+|++|++++|.++.+ .+..+.++++|++|+|++|.+....
T Consensus 31 ~~~~~c~~~~~---~l~~iP~~~~~~L~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 31 DRNGICKGSSG---SLNSIPSGLTEAVKSLDLSNNRITYI---------------SNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp CTTSEEECCST---TCSSCCTTCCTTCCEEECTTSCCCEE---------------CTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCeEeeCCCC---CcccccccccccCcEEECCCCcCccc---------------CHHHhccCCCCCEEECCCCccCccC
Confidence 34445566655 56778888888999999999988865 1336888999999999999877766
Q ss_pred CC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCC--cc-CCCCCCEEEecCCCCCCcCCCCCcC
Q 002299 639 PD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPH--TI-RSESLFELRLSGCTSLKRFPKISSC 714 (940)
Q Consensus 639 ~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~~-~l~~L~~L~l~~~~~l~~~~~~~~~ 714 (940)
+. |..+++|++|++++|......+..+..+++|++|++++|... .+|. .+ .+++|++|++++|..+..++
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~----- 166 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ----- 166 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC-----
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccC-----
Confidence 65 999999999999999666544455899999999999999654 4554 23 57777777777765333322
Q ss_pred CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|... .++..+.. .+++
T Consensus 167 ---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~----~~~~ 223 (353)
T 2z80_A 167 ---------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI----LLLEIFVD----VTSS 223 (353)
T ss_dssp ---------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST----THHHHHHH----HTTT
T ss_pred ---------------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc----cchhhhhh----hccc
Confidence 223455556666666665555555555556666666666655421 11211110 1156
Q ss_pred ceEEEcCCCCCCccccCcc---CCCCCccEEeeeCCCCCC----CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhcc
Q 002299 795 LSKLELNNCSRLESFPSSL---CMFESLASLKIIDCPRLD----GLPDELGNLKALEELTVEGTAMREVPESLGQLLESL 867 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~l 867 (940)
|+.|++++|.+....+..+ ...+.++.++++++.+.+ .+|..+..+++|++|+|++|+++.+|..
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~-------- 295 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG-------- 295 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT--------
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH--------
Confidence 6666666665443322221 234566777777776654 2455667777777777777777666532
Q ss_pred CccccCCCCCCEEeccCCCCCcccC
Q 002299 868 PSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 868 p~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
.|..+++|+.|+|++|++....|
T Consensus 296 --~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 296 --IFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp --TTTTCTTCCEEECCSSCBCCCHH
T ss_pred --HHhcCCCCCEEEeeCCCccCcCC
Confidence 13567777777777777766544
No 63
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.88 E-value=6.3e-24 Score=196.31 Aligned_cols=103 Identities=20% Similarity=0.377 Sum_probs=78.6
Q ss_pred CCCcccEEEcCcccccCCcchHHHHHHHHh--CCCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHH
Q 002299 18 RKNKYDVFLSFRGEDTRGNFTSHLFSALSK--KHIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLD 94 (940)
Q Consensus 18 ~~~~~dvFis~~~~d~~~~f~~~l~~~L~~--~g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~ 94 (940)
....|||||||+++|+ .||.+|+++|++ +|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|+||+.|.||+.
T Consensus 7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 4568999999999997 599999999998 699999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEEcccCCcch
Q 002299 95 ELLKIIDCKNNSGQMVIPVFYRVDPSHV 122 (940)
Q Consensus 95 El~~~~~~~~~~~~~v~pvf~~v~p~~v 122 (940)
|+..++.+...+...|+||||+++++++
T Consensus 85 El~~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 85 QMLQALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHHHHhhcCCcEEEEEcCCChhhC
Confidence 9999999874344477899999985544
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1e-20 Score=214.78 Aligned_cols=245 Identities=18% Similarity=0.162 Sum_probs=181.8
Q ss_pred cceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCCC
Q 002299 561 LRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPD 640 (940)
Q Consensus 561 Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 640 (940)
.+.++..+. .+..+|.++...+++|++++|.++.+ .+..+.++++|++|+|++|.+....+.
T Consensus 45 ~~~v~c~~~---~l~~iP~~~~~~l~~L~L~~n~i~~~---------------~~~~~~~l~~L~~L~Ls~n~i~~i~~~ 106 (440)
T 3zyj_A 45 FSKVICVRK---NLREVPDGISTNTRLLNLHENQIQII---------------KVNSFKHLRHLEILQLSRNHIRTIEIG 106 (440)
T ss_dssp SCEEECCSC---CCSSCCSCCCTTCSEEECCSCCCCEE---------------CTTTTSSCSSCCEEECCSSCCCEECGG
T ss_pred CCEEEeCCC---CcCcCCCCCCCCCcEEEccCCcCCee---------------CHHHhhCCCCCCEEECCCCcCCccChh
Confidence 445555544 56778888888888888888888765 235577888888888888876655554
Q ss_pred -cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCCcCCccE
Q 002299 641 -LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKISSCFLKD 718 (940)
Q Consensus 641 -l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~L~~ 718 (940)
|.++++|++|+|++|.+....+..+..+++|++|++++|......+..+ .+++|++|++++|+
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--------------- 171 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--------------- 171 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT---------------
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC---------------
Confidence 8888888888888886655555578888888888888886543333222 35555555555433
Q ss_pred EecCCCCCcccCc-cccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceE
Q 002299 719 LDLESCGIEELPS-SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSK 797 (940)
Q Consensus 719 L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 797 (940)
.+..++. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|......+ ..+..+ ++|+.
T Consensus 172 ------~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l-----~~L~~ 235 (440)
T 3zyj_A 172 ------RLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRP---GSFQGL-----MHLQK 235 (440)
T ss_dssp ------TCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECT---TTTTTC-----TTCCE
T ss_pred ------CcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccCh---hhhccC-----ccCCE
Confidence 3445554 4788999999999998765 445 47888999999999986553333 334344 88999
Q ss_pred EEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc
Q 002299 798 LELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 798 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
|++++|.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|++.
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 999999888877888888999999999999888766677788899999999999876
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.1e-21 Score=209.09 Aligned_cols=140 Identities=17% Similarity=0.114 Sum_probs=73.9
Q ss_pred ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCc
Q 002299 733 IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSS 812 (940)
Q Consensus 733 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 812 (940)
+..+++|+.|++++|.+....+..+..+++|++|++++|..... ..|..+..+ ++|++|++++|.+....|..
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTEL-----RNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTC-----TTCCEEECTTSCCCEECTTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cchhHHhhC-----cCCCEEECCCCCcCCcCHHH
Confidence 44455555555555554444444455555555555555433210 011122222 55566666665555555555
Q ss_pred cCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCC-CCCEEeccCCCCCc
Q 002299 813 LCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSK-CLQDSYLDDCPNLH 889 (940)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~-~L~~L~L~~n~~~~ 889 (940)
+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|++...+ |..+..++ +|+.|+|++|++..
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK----------KQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS----------SSSCCCCCTTCCEEECTTCCEEC
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC----------HHHHHhhhccCCEEEccCCCeec
Confidence 666666666666666665544445566666666666666664432 23344443 66666666666543
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=9.7e-25 Score=250.28 Aligned_cols=333 Identities=17% Similarity=0.184 Sum_probs=190.4
Q ss_pred hhccCCCcceEEEecCCCccc--ccCCCCC--CCCcceEEeCCCCCchhhhhhhccccccccccccccccccC----CCc
Q 002299 554 TFSMMPELRFLKFYGQNKCMI--THFEGAP--FTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLV----NLK 625 (940)
Q Consensus 554 ~f~~~~~Lr~L~l~~~~~~~i--~~l~~~~--~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~----~L~ 625 (940)
.|..+++|+.|++++|..... ..++..+ .++|++|++++|.+....... ....+. +|+
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~--------------l~~~l~~~~~~L~ 88 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC--------------VLQGLQTPSCKIQ 88 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH--------------HHHTTCSTTCCCC
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH--------------HHHHHhhCCCcee
Confidence 477889999999998853311 0222222 278899999998876542110 011222 577
Q ss_pred eeeCCCCCCCC----cCC-CcccCCCccEEeccCCCCCccccccc-----cCCCcccEEEecCCCCCccc----CCcc-C
Q 002299 626 EIDLSDSKQLT----KLP-DLSLARNLESLDLWGCSSLMETHSSI-----QYLNKLAFLYLVSCESLRSL----PHTI-R 690 (940)
Q Consensus 626 ~L~L~~~~~~~----~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~l----~~~~-~ 690 (940)
+|+|++|.+.. .++ .+..+++|++|++++|......+..+ ...++|++|++++|...... +..+ .
T Consensus 89 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 168 (461)
T 1z7x_W 89 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh
Confidence 77777776542 223 36677777777777776443322222 23456777777777544322 2222 3
Q ss_pred CCCCCEEEecCCCCCCcCCCC-------CcCCccEEecCCCCCcc-----cCccccccCCCcEEEecCCCCCccc-----
Q 002299 691 SESLFELRLSGCTSLKRFPKI-------SSCFLKDLDLESCGIEE-----LPSSIECLYNLRSIDLLNCTRLEYI----- 753 (940)
Q Consensus 691 l~~L~~L~l~~~~~l~~~~~~-------~~~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~~----- 753 (940)
+++|++|++++|......+.. ...+|++|++++|.++. ++..+..+++|+.|++++|.+....
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence 567777777776522110000 01247777777777774 4556667777777777777654321
Q ss_pred ccccCCCCCCcEEEecCCCCCCcC-CCCCcchhccccccCCCceEEEcCCCCCCccccCcc-----CCCCCccEEeeeCC
Q 002299 754 ASSIFTLKSLESIRISKCSNLRKF-PEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSL-----CMFESLASLKIIDC 827 (940)
Q Consensus 754 ~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~l~~~ 827 (940)
+..+..+++|++|++++|.....- ..++..+..+ ++|++|++++|.+....+..+ ...++|+.|++++|
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-----~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-----ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-----TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-----CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 222234677777777776432100 0012222223 677777777776543222111 12357777777777
Q ss_pred CCCCC----CCccCCCCCCCCEEEccCCCCccCc-hhHHHhhhccCcccc-CCCCCCEEeccCCCCCc----ccCCCcCC
Q 002299 828 PRLDG----LPDELGNLKALEELTVEGTAMREVP-ESLGQLLESLPSSLY-KSKCLQDSYLDDCPNLH----RLPDELGS 897 (940)
Q Consensus 828 ~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~~lp~~~~-~l~~L~~L~L~~n~~~~----~~p~~~~~ 897 (940)
.+.+. ++..+..+++|++|+|++|.+.... ..+. ..+. ..++|+.|+|++|.+.. .+|..+..
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~-------~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC-------QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH-------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH-------HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 76543 3455566677777777777765432 1111 1121 25677777777777664 56666667
Q ss_pred chhhhhhhccCCccC
Q 002299 898 LEALKRLYAEGKCSD 912 (940)
Q Consensus 898 l~~L~~L~l~~n~~~ 912 (940)
+++|++|++++|.+.
T Consensus 397 ~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 397 NHSLRELDLSNNCLG 411 (461)
T ss_dssp CCCCCEEECCSSSCC
T ss_pred CCCccEEECCCCCCC
Confidence 777777777777543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=1.3e-22 Score=219.22 Aligned_cols=240 Identities=15% Similarity=0.061 Sum_probs=159.6
Q ss_pred ccccCCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCE
Q 002299 618 VQNLVNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFE 696 (940)
Q Consensus 618 ~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~ 696 (940)
+..+++|++|+|++|.+....|. |..+++|++|++++|......+ +..+++|++|++++|... .++ ..++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~---~~~~--- 100 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL---VGPS--- 100 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE---ECTT---
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc---CCCC---
Confidence 45567889999999877666553 8888889999998886654443 788888888888887432 222 1234
Q ss_pred EEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCc
Q 002299 697 LRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRK 776 (940)
Q Consensus 697 L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 776 (940)
|++|++++|.++.++.. .+++|+.|++++|.+....+..+..+++|+.|++++|.....
T Consensus 101 -------------------L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 101 -------------------IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp -------------------CCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred -------------------cCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 55555555555554432 255666666666666555555556666666666666543321
Q ss_pred CCCCCcch-hccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCcc
Q 002299 777 FPEIPSCI-IDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMRE 855 (940)
Q Consensus 777 ~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 855 (940)
. +..+ ..+ ++|++|++++|.+... +. ...+++|++|++++|.+.+ +|..+..+++|+.|+|++|.++.
T Consensus 160 ~---~~~~~~~l-----~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 160 N---FAELAASS-----DTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp E---GGGGGGGT-----TTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred c---HHHHhhcc-----CcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc
Confidence 1 1111 112 6677777777765443 32 2347888888888888775 45557788888888888888766
Q ss_pred CchhHHHhhhccCccccCCCCCCEEeccCCCCC-cccCCCcCCchhhhhhhccCC
Q 002299 856 VPESLGQLLESLPSSLYKSKCLQDSYLDDCPNL-HRLPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 856 lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~l~~n 909 (940)
+| ..+..+++|+.|+|++|++. ..+|..+..+++|+.|++.+|
T Consensus 229 l~-----------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 229 IE-----------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EC-----------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hh-----------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 55 44567788888888888887 567777888888888888743
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.7e-20 Score=213.58 Aligned_cols=243 Identities=18% Similarity=0.187 Sum_probs=164.2
Q ss_pred cceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCCC
Q 002299 561 LRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPD 640 (940)
Q Consensus 561 Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 640 (940)
.+.++..+. .+..+|.+...++++|++++|.++.+ .+..+.++++|++|+|++|.+....+.
T Consensus 56 ~~~v~c~~~---~l~~iP~~~~~~l~~L~L~~n~i~~~---------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 117 (452)
T 3zyi_A 56 FSKVVCTRR---GLSEVPQGIPSNTRYLNLMENNIQMI---------------QADTFRHLHHLEVLQLGRNSIRQIEVG 117 (452)
T ss_dssp SCEEECCSS---CCSSCCSCCCTTCSEEECCSSCCCEE---------------CTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CcEEEECCC---CcCccCCCCCCCccEEECcCCcCceE---------------CHHHcCCCCCCCEEECCCCccCCcChh
Confidence 344554443 55778887778999999999988765 256688899999999999987766654
Q ss_pred -cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCCc---CC
Q 002299 641 -LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKISS---CF 715 (940)
Q Consensus 641 -l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~---~~ 715 (940)
|.++++|++|+|++|.+....+..+..+++|++|++++|......+..+ .+++|+.|++++|+.+..++.... .+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 8899999999999997666556668899999999999986554333333 578888888888776665553211 14
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
|++|++++|.++.+|. +..+++|+.|++++|.+.+..|..+.++++|+.|++
T Consensus 198 L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--------------------------- 249 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV--------------------------- 249 (452)
T ss_dssp CCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC---------------------------
T ss_pred CCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEe---------------------------
Confidence 5666666666655543 455555555555555555544544555555555554
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++.
T Consensus 250 -----~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 250 -----MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -----TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred -----CCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 444444444555666677777777777666555555666777777777777655
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.3e-21 Score=223.79 Aligned_cols=236 Identities=16% Similarity=0.072 Sum_probs=165.7
Q ss_pred ccCCCceeeCCCCCCCCcCC-CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEE
Q 002299 620 NLVNLKEIDLSDSKQLTKLP-DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELR 698 (940)
Q Consensus 620 ~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~ 698 (940)
.+++|++|+|++|.+....| .|..+++|++|+|++|.+....| +..+++|++|++++|... .+|. .++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~---~~~----- 100 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV---GPS----- 100 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE---CTT-----
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC---CCC-----
Confidence 45589999999998777666 48899999999999987655554 888899999999988432 2221 133
Q ss_pred ecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCC
Q 002299 699 LSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFP 778 (940)
Q Consensus 699 l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 778 (940)
|++|++++|.++.++.. .+++|+.|++++|.+.+..|..+..+++|+.|++++|......
T Consensus 101 -----------------L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 160 (487)
T 3oja_A 101 -----------------IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN- 160 (487)
T ss_dssp -----------------CCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-
T ss_pred -----------------cCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-
Confidence 55555555555555432 3566667777666666666666666667777777666543221
Q ss_pred CCCcchh-ccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc
Q 002299 779 EIPSCII-DEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 779 ~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
|..+. .+ ++|+.|+|++|.+... |. ...+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|.++.+|
T Consensus 161 --~~~l~~~l-----~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 161 --FAELAASS-----DTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp --GGGGGGGT-----TTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred --hHHHhhhC-----CcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccc
Confidence 22221 22 6777777777765544 32 3458889999999998876 4555888899999999999887655
Q ss_pred hhHHHhhhccCccccCCCCCCEEeccCCCCC-cccCCCcCCchhhhhhhcc
Q 002299 858 ESLGQLLESLPSSLYKSKCLQDSYLDDCPNL-HRLPDELGSLEALKRLYAE 907 (940)
Q Consensus 858 ~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~l~ 907 (940)
..+..+++|+.|++++|++. +.+|..+..++.|+.+++.
T Consensus 231 -----------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 -----------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -----------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 44567888999999999887 5677788888999988886
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=1.9e-20 Score=199.28 Aligned_cols=203 Identities=21% Similarity=0.199 Sum_probs=99.7
Q ss_pred CCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCccc-CCcc-CCCCCCEEE
Q 002299 622 VNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSL-PHTI-RSESLFELR 698 (940)
Q Consensus 622 ~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~-~l~~L~~L~ 698 (940)
++|++|+|++|.+....+. |..+++|++|++++|......|..+..+++|++|++++|..+..+ |..+ .++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~------ 105 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG------ 105 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc------
Confidence 3555555555544443332 555555555555555444444445555555555555555322222 1111 122
Q ss_pred ecCCCCCCcCCCCCcCCccEEecCCCCCccc-CccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcC
Q 002299 699 LSGCTSLKRFPKISSCFLKDLDLESCGIEEL-PSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKF 777 (940)
Q Consensus 699 l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 777 (940)
+|++|++++|.++.+ |..+..+++|+.|++++|.+....+..+..+++|+.|++++|.... +
T Consensus 106 ----------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~ 168 (285)
T 1ozn_A 106 ----------------RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-V 168 (285)
T ss_dssp ----------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-E
T ss_pred ----------------CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-c
Confidence 244444455555544 2335556666666666655554444445555666666665543321 1
Q ss_pred CCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc
Q 002299 778 PEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 778 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
+. ..+..+ ++|+.|++++|.+....|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 169 ~~--~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 169 PE--RAFRGL-----HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CT--TTTTTC-----TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CH--HHhcCc-----cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 10 111122 55555555555555444555555555555655555555433344555555555555555554
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=3.8e-23 Score=237.00 Aligned_cols=338 Identities=17% Similarity=0.118 Sum_probs=228.4
Q ss_pred hhhhccCCCcceEEEecCCCcc--cccCCCCCC---CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCce
Q 002299 552 PYTFSMMPELRFLKFYGQNKCM--ITHFEGAPF---TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKE 626 (940)
Q Consensus 552 ~~~f~~~~~Lr~L~l~~~~~~~--i~~l~~~~~---~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~ 626 (940)
+..+..+++|++|++++|.... +..+..... .+|++|++++|.+...... .++..+.++++|++
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~-----------~l~~~l~~~~~L~~ 117 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG-----------VLSSTLRTLPTLQE 117 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH-----------HHHHHTTSCTTCCE
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH-----------HHHHHHccCCceeE
Confidence 4568889999999999985322 111111121 2799999999998754211 23566888999999
Q ss_pred eeCCCCCCCCcCCC------cccCCCccEEeccCCCCCcc----ccccccCCCcccEEEecCCCCCcccCCcc------C
Q 002299 627 IDLSDSKQLTKLPD------LSLARNLESLDLWGCSSLME----THSSIQYLNKLAFLYLVSCESLRSLPHTI------R 690 (940)
Q Consensus 627 L~L~~~~~~~~~~~------l~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~l~~~~------~ 690 (940)
|+|++|.+....+. ....++|++|++++|..... ++..+..+++|++|++++|......+..+ .
T Consensus 118 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 197 (461)
T 1z7x_W 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHS
T ss_pred EECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcC
Confidence 99999985433221 23356899999999976653 35667788999999999997543322222 2
Q ss_pred CCCCCEEEecCCCCCCc----CCCCC--cCCccEEecCCCCCccc-----Ccc-ccccCCCcEEEecCCCCCcc----cc
Q 002299 691 SESLFELRLSGCTSLKR----FPKIS--SCFLKDLDLESCGIEEL-----PSS-IECLYNLRSIDLLNCTRLEY----IA 754 (940)
Q Consensus 691 l~~L~~L~l~~~~~l~~----~~~~~--~~~L~~L~L~~~~i~~l-----p~~-~~~l~~L~~L~l~~~~~~~~----~~ 754 (940)
.++|++|++++|..-.. ++... ..+|++|++++|.++.. ++. +..+++|+.|++++|.+... ++
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 56999999999964331 22211 13699999999998743 222 34689999999999977654 56
Q ss_pred cccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCcc----ccCccCCCCCccEEeeeCCCCC
Q 002299 755 SSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLES----FPSSLCMFESLASLKIIDCPRL 830 (940)
Q Consensus 755 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~ 830 (940)
..+..+++|++|++++|.... ..+..+........++|++|++++|.+... ++..+..+++|++|++++|.+.
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGD---EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHH---HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHhhCCCcceEECCCCCCch---HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 677789999999999985421 111111111111126899999999987654 5666777899999999999876
Q ss_pred CCCCc----cCCC-CCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcc--------cCCCcCC
Q 002299 831 DGLPD----ELGN-LKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHR--------LPDELGS 897 (940)
Q Consensus 831 ~~~~~----~l~~-l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~--------~p~~~~~ 897 (940)
+..+. .+.. .++|++|+|++|.++... ...+|..+..+++|+.|+|++|++... +|.....
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~------~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~ 428 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSS------CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 428 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH------HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhh------HHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcc
Confidence 53232 2222 689999999999987311 123344555689999999999998653 3433334
Q ss_pred chhhhhhhccCC
Q 002299 898 LEALKRLYAEGK 909 (940)
Q Consensus 898 l~~L~~L~l~~n 909 (940)
++.|..+++..|
T Consensus 429 L~~L~~~~~~~~ 440 (461)
T 1z7x_W 429 LEQLVLYDIYWS 440 (461)
T ss_dssp CCEEECTTCCCC
T ss_pred hhheeecccccC
Confidence 445544444443
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=4.8e-22 Score=214.37 Aligned_cols=249 Identities=16% Similarity=0.103 Sum_probs=171.0
Q ss_pred cccccCCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCC-cccccccc-------CCCcccEEEecCCCCCcccCC
Q 002299 617 DVQNLVNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSL-METHSSIQ-------YLNKLAFLYLVSCESLRSLPH 687 (940)
Q Consensus 617 ~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~l~~ 687 (940)
.++...+|++|++++|.+ .+|. +... |++|++++|... ..+|..+. ++++|++|++++|.....+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 356778899999999987 5553 4443 888888888652 34555444 688888888888876666665
Q ss_pred cc---CCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCcccccc-----CCCcEEEecCCCCCcccccccCC
Q 002299 688 TI---RSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECL-----YNLRSIDLLNCTRLEYIASSIFT 759 (940)
Q Consensus 688 ~~---~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~ 759 (940)
.+ .+++ |++|++++|.++.+|..+..+ ++|++|++++|.+.+..+..+..
T Consensus 114 ~~~~~~l~~----------------------L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 114 PLLEATGPD----------------------LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp CSSSCCSCC----------------------CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred HHHHhcCCC----------------------ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 42 2444 555555556666566556655 77888888887777666677777
Q ss_pred CCCCcEEEecCCCCCCcCCCCCcch--hccccccCCCceEEEcCCCCCCc--ccc-CccCCCCCccEEeeeCCCCCCCCC
Q 002299 760 LKSLESIRISKCSNLRKFPEIPSCI--IDEAGIKRQALSKLELNNCSRLE--SFP-SSLCMFESLASLKIIDCPRLDGLP 834 (940)
Q Consensus 760 l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 834 (940)
+++|++|++++|......+ .+..+ .. +++|++|++++|.+.. .++ ..+..+++|+.|++++|.+.+..|
T Consensus 172 l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERG-LISALCPLK-----FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHH-HHHHSCTTS-----CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred CCCCCEEECCCCCcCcchH-HHHHHHhcc-----CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 8888888888776432110 01111 22 2788888888886652 222 233567888889998888877554
Q ss_pred -ccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccC
Q 002299 835 -DELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSD 912 (940)
Q Consensus 835 -~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 912 (940)
..+..+++|++|+|++|.++.+|. .+. ++|+.|+|++|++.+. |. +..+++|+.|++++|.+.
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~ip~-----------~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLKQVPK-----------GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCSSCCS-----------SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhhhhhcCCCCEEECCCCccChhhh-----------hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 455667889999999998876663 222 6788999998887664 65 888889999999988654
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.9e-21 Score=209.70 Aligned_cols=235 Identities=16% Similarity=0.139 Sum_probs=169.8
Q ss_pred cccccccCCCceeeCCCCCCC-CcCCC-cc-------cCCCccEEeccCCCCCccccccc--cCCCcccEEEecCCCCCc
Q 002299 615 WDDVQNLVNLKEIDLSDSKQL-TKLPD-LS-------LARNLESLDLWGCSSLMETHSSI--QYLNKLAFLYLVSCESLR 683 (940)
Q Consensus 615 ~~~~~~l~~L~~L~L~~~~~~-~~~~~-l~-------~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~ 683 (940)
|..+... |+.|+|++|.+. ..+|. +. .+++|++|++++|......|..+ ..+++|++|++++|....
T Consensus 58 p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 135 (312)
T 1wwl_A 58 LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135 (312)
T ss_dssp CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS
T ss_pred HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc
Confidence 5555544 899999999763 23443 33 68999999999998888888876 899999999999996655
Q ss_pred ccCCcc-CCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccC-ccccccCCCcEEEecCCCCCcc--ccccc--
Q 002299 684 SLPHTI-RSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELP-SSIECLYNLRSIDLLNCTRLEY--IASSI-- 757 (940)
Q Consensus 684 ~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~~l-- 757 (940)
. |..+ .+. .....+|++|++++|.++.++ ..+..+++|+.|++++|.+.+. .+..+
T Consensus 136 ~-~~~~~~l~-----------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 136 R-DAWLAELQ-----------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp S-SSHHHHHH-----------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred h-hHHHHHHH-----------------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 4 5433 120 000112666666666677666 5678889999999999887654 33334
Q ss_pred CCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCcccc-CccCCCCCccEEeeeCCCCCCCCCcc
Q 002299 758 FTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFP-SSLCMFESLASLKIIDCPRLDGLPDE 836 (940)
Q Consensus 758 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 836 (940)
..+++|++|++++|... .++..+..+. ..+++|+.|++++|.+....| ..+..+++|+.|++++|.+. .+|..
T Consensus 198 ~~l~~L~~L~L~~N~l~-~~~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGME-TPSGVCSALA----AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp TSCTTCCEEECTTSCCC-CHHHHHHHHH----HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred ccCCCCCEEECCCCcCc-chHHHHHHHH----hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 77899999999987543 2222221111 122789999999998777664 44566899999999999987 57776
Q ss_pred CCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCc
Q 002299 837 LGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLH 889 (940)
Q Consensus 837 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~ 889 (940)
+. ++|++|+|++|+++.+| . +..+++|+.|+|++|++.+
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~p-----------~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRNP-----------S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSCC-----------C-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCCh-----------h-HhhCCCCCEEeccCCCCCC
Confidence 66 89999999999987765 2 5578999999999998764
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1.3e-19 Score=192.80 Aligned_cols=242 Identities=15% Similarity=0.095 Sum_probs=140.7
Q ss_pred cEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCCc--CCccEEecCCC
Q 002299 648 ESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKISS--CFLKDLDLESC 724 (940)
Q Consensus 648 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~--~~L~~L~L~~~ 724 (940)
.+++.+++ .+..+|..+ .++|+.|++++|......+..+ .+++|++|++++|......+.... .+|++|++++|
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777765 455566543 4688889998886655444433 467777777777653332232222 25677777776
Q ss_pred C-Cccc-CccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCC
Q 002299 725 G-IEEL-PSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNN 802 (940)
Q Consensus 725 ~-i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 802 (940)
. ++.+ |..+..+++|+.|++++|.+....+..+..+++|++|++++|......+ ..+..+ ++|++|++++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l-----~~L~~L~l~~ 162 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRDL-----GNLTHLFLHG 162 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTC-----TTCCEEECCS
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH---hHhccC-----CCccEEECCC
Confidence 5 6655 4456666777777777766666556666666777777776654432111 112222 6666677766
Q ss_pred CCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEec
Q 002299 803 CSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYL 882 (940)
Q Consensus 803 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L 882 (940)
|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+|. ..+..+++|+.|+|
T Consensus 163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT----------EALAPLRALQYLRL 232 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH----------HHHTTCTTCCEEEC
T ss_pred CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH----------HHcccCcccCEEec
Confidence 65554444456666666777776666666556666666666777776666665553 22345666666666
Q ss_pred cCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 883 DDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 883 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
++|++....+. ......|+.+....+..
T Consensus 233 ~~N~~~c~~~~-~~~~~~l~~~~~~~~~~ 260 (285)
T 1ozn_A 233 NDNPWVCDCRA-RPLWAWLQKFRGSSSEV 260 (285)
T ss_dssp CSSCEECSGGG-HHHHHHHHHCCSEECCC
T ss_pred cCCCccCCCCc-HHHHHHHHhcccccCcc
Confidence 66665443221 11223445555544433
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.5e-19 Score=186.75 Aligned_cols=203 Identities=22% Similarity=0.157 Sum_probs=156.0
Q ss_pred CCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCc-cccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCC
Q 002299 694 LFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPS-SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCS 772 (940)
Q Consensus 694 L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 772 (940)
.+.++++++. +..+|.....++++|++++|.++.+|. .+..+++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus 18 ~~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 18 KNSVDCSSKK-LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEEccCCC-CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 4445555433 334444444458888888888888876 58889999999999987776555566888999999999876
Q ss_pred CCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCC
Q 002299 773 NLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTA 852 (940)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 852 (940)
.....+ ..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.
T Consensus 97 l~~~~~---~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 97 LQALPI---GVFDQL-----VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp CCCCCT---TTTTTC-----SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCH---hHcccc-----cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 542222 222333 889999999998877777778899999999999999887656668899999999999999
Q ss_pred CccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCCc
Q 002299 853 MREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRST 915 (940)
Q Consensus 853 l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 915 (940)
++.+|. ..|..+++|+.|+|++|++....+..+..+++|+.|++++|++.+.+
T Consensus 169 l~~~~~----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 169 LKRVPE----------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CSCCCT----------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CcEeCh----------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 887763 34667899999999999887765667888999999999999876654
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.5e-20 Score=203.02 Aligned_cols=252 Identities=16% Similarity=0.064 Sum_probs=191.3
Q ss_pred CCCceeeCCCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEec
Q 002299 622 VNLKEIDLSDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLS 700 (940)
Q Consensus 622 ~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~ 700 (940)
..++.++++.+.+...++. +..+++|++|++++|......|..+..+++|++|++++|......+ ...+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~------- 81 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLST------- 81 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTT-------
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCC-------
Confidence 4567777887765444444 5667899999999997777767788999999999999986543322 222333
Q ss_pred CCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCC
Q 002299 701 GCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEI 780 (940)
Q Consensus 701 ~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 780 (940)
|++|++++|.++.+| ..++|+.|++++|.+....+. .+++|++|++++|......+
T Consensus 82 ---------------L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~-- 137 (317)
T 3o53_A 82 ---------------LRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD-- 137 (317)
T ss_dssp ---------------CCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG--
T ss_pred ---------------CCEEECcCCcccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc--
Confidence 666666667776655 348999999999987765544 37889999999987653222
Q ss_pred CcchhccccccCCCceEEEcCCCCCCccccCcc-CCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchh
Q 002299 781 PSCIIDEAGIKRQALSKLELNNCSRLESFPSSL-CMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPES 859 (940)
Q Consensus 781 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~ 859 (940)
..+..+ ++|+.|++++|.+....+..+ ..+++|++|++++|.+.+. + ....+++|++|+|++|.++.+|..
T Consensus 138 -~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 138 -LDEGCR-----SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp -BCTGGG-----SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG
T ss_pred -hhhhcc-----CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh
Confidence 233333 899999999998887766666 4789999999999998763 3 344589999999999999877643
Q ss_pred HHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCCccchhcccchh
Q 002299 860 LGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRSTLVYYISRDAE 925 (940)
Q Consensus 860 l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~~~~ 925 (940)
+..+++|+.|+|++|++. .+|..+..+++|+.|++++|.+.+..++.++.....
T Consensus 210 -----------~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 210 -----------FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp -----------GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred -----------hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 456899999999999877 478889999999999999999887666666554433
No 77
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.81 E-value=5.3e-21 Score=179.98 Aligned_cols=100 Identities=18% Similarity=0.346 Sum_probs=90.4
Q ss_pred CCCcccEEEcCcccccCCcchHHHHHHHHhC--CCcEEecC-CCCCCCcchHHHHHHHH-hcceEEEEecCCccchhhhH
Q 002299 18 RKNKYDVFLSFRGEDTRGNFTSHLFSALSKK--HIETFIDD-QLIRGDEISQSLLDAIE-ASTISVIIFSEGYASSKWCL 93 (940)
Q Consensus 18 ~~~~~dvFis~~~~d~~~~f~~~l~~~L~~~--g~~~f~d~-~~~~g~~~~~~l~~ai~-~s~~~i~v~S~~y~~s~~cl 93 (940)
..+.|||||||+++|. +||.+|+++|+++ |+++|+|+ |+.+|+.+.++|.++|+ +|+++|+|+|++|+.|.||+
T Consensus 13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 4678999999999995 7999999999985 69999998 99999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhh-ccCCCEEEEEEcccCC
Q 002299 94 DELLKIIDCK-NNSGQMVIPVFYRVDP 119 (940)
Q Consensus 94 ~El~~~~~~~-~~~~~~v~pvf~~v~p 119 (940)
.|+..++++. +..++.|+||||+..+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999875 3345689999998753
No 78
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.81 E-value=3.6e-21 Score=179.47 Aligned_cols=98 Identities=22% Similarity=0.381 Sum_probs=89.0
Q ss_pred CCCcccEEEcCcccccCCcchHH-HHHHHHhC--CCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhH
Q 002299 18 RKNKYDVFLSFRGEDTRGNFTSH-LFSALSKK--HIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCL 93 (940)
Q Consensus 18 ~~~~~dvFis~~~~d~~~~f~~~-l~~~L~~~--g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl 93 (940)
..+.|||||||+|+|. +||.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+.|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4578999999999997 79997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hccCCCEEEEEEccc
Q 002299 94 DELLKIIDC-KNNSGQMVIPVFYRV 117 (940)
Q Consensus 94 ~El~~~~~~-~~~~~~~v~pvf~~v 117 (940)
.|+..++.+ .+.++..|+||||+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~ 104 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 999998853 345567899999964
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=1.3e-18 Score=184.70 Aligned_cols=186 Identities=16% Similarity=0.068 Sum_probs=149.9
Q ss_pred CCCCCcCCccEEecCCCCCcccC-ccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhc
Q 002299 708 FPKISSCFLKDLDLESCGIEELP-SSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIID 786 (940)
Q Consensus 708 ~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 786 (940)
+|.....+++.|++++|.++.++ ..+..+++|+.|++++|.+... +. ...+++|+.|++++|... .+| ..+..
T Consensus 25 ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~---~~~~~ 98 (290)
T 1p9a_G 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLP---LLGQT 98 (290)
T ss_dssp CCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCC---CCTTT
T ss_pred CCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCc---hhhcc
Confidence 33333345888888888888764 4588899999999999876654 33 278899999999997543 333 33444
Q ss_pred cccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhc
Q 002299 787 EAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLES 866 (940)
Q Consensus 787 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~ 866 (940)
+ ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|+++.+|.
T Consensus 99 l-----~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-------- 165 (290)
T 1p9a_G 99 L-----PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-------- 165 (290)
T ss_dssp C-----TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT--------
T ss_pred C-----CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH--------
Confidence 4 899999999998877777789999999999999999988666778899999999999999988774
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCCc
Q 002299 867 LPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRST 915 (940)
Q Consensus 867 lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 915 (940)
..|..+++|+.|+|++|++. .+|..+..+++|+.|++++|++.|.+
T Consensus 166 --~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 166 --GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp --TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred --HHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 33567999999999999876 57888888889999999999987754
No 80
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.81 E-value=8.9e-21 Score=181.16 Aligned_cols=101 Identities=21% Similarity=0.405 Sum_probs=87.2
Q ss_pred CCCCcccEEEcCcccccCCcchHH-HHHHHHh--CCCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCccchhhh
Q 002299 17 PRKNKYDVFLSFRGEDTRGNFTSH-LFSALSK--KHIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWC 92 (940)
Q Consensus 17 ~~~~~~dvFis~~~~d~~~~f~~~-l~~~L~~--~g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~c 92 (940)
...+.|||||||+++|. +||.+ |+++|++ +|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+.|.||
T Consensus 31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc 108 (178)
T 2j67_A 31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108 (178)
T ss_dssp CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence 45678999999999996 79986 9999998 899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-ccCCCEEEEEEcccCC
Q 002299 93 LDELLKIIDCK-NNSGQMVIPVFYRVDP 119 (940)
Q Consensus 93 l~El~~~~~~~-~~~~~~v~pvf~~v~p 119 (940)
+.|+..++.+. +..++.|+||||+..|
T Consensus 109 ~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 109 HYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 99999998653 4456789999997543
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.6e-19 Score=206.58 Aligned_cols=229 Identities=16% Similarity=0.062 Sum_probs=180.8
Q ss_pred cCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecC
Q 002299 643 LARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLE 722 (940)
Q Consensus 643 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~ 722 (940)
.+++|++|+|++|.+....|..+..+++|++|++++|......| ...+++ |++|+|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~----------------------L~~L~Ls 88 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLST----------------------LRTLDLN 88 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTT----------------------CCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCC----------------------CCEEEec
Confidence 45689999999998777777889999999999999986544333 222333 6666666
Q ss_pred CCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCC
Q 002299 723 SCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNN 802 (940)
Q Consensus 723 ~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 802 (940)
+|.++.+|. .++|+.|++++|.+.+..+. .+++|+.|++++|...... |..+..+ ++|+.|++++
T Consensus 89 ~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~---~~~~~~l-----~~L~~L~Ls~ 153 (487)
T 3oja_A 89 NNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR---DLDEGCR-----SRVQYLDLKL 153 (487)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG---GBCGGGG-----SSEEEEECTT
T ss_pred CCcCCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC---chhhcCC-----CCCCEEECCC
Confidence 677776654 48999999999988776554 4689999999998765432 3334444 8999999999
Q ss_pred CCCCccccCccC-CCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEe
Q 002299 803 CSRLESFPSSLC-MFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSY 881 (940)
Q Consensus 803 ~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~ 881 (940)
|.+....|..+. .+++|+.|+|++|.+.+. | ....+++|+.|+|++|.++.+|+. +..+++|+.|+
T Consensus 154 N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~l~~L~~L~ 220 (487)
T 3oja_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-----------FQSAAGVTWIS 220 (487)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-----------GGGGTTCSEEE
T ss_pred CCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHh-----------HcCCCCccEEE
Confidence 999887787776 799999999999998764 3 345699999999999999877643 45689999999
Q ss_pred ccCCCCCcccCCCcCCchhhhhhhccCCccCCCccchhcccc
Q 002299 882 LDDCPNLHRLPDELGSLEALKRLYAEGKCSDRSTLVYYISRD 923 (940)
Q Consensus 882 L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~~ 923 (940)
|++|.+.+ +|..+..+++|+.|++++|.+.+..++.++...
T Consensus 221 Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp CTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred ecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 99999875 788899999999999999998876666555443
No 82
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.79 E-value=6.4e-20 Score=172.39 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=89.1
Q ss_pred CcccEEEcCccccc---------CCcchHHHHH-HHH-hCCCcEEecC-CCCCCCcchHHHHHHHHhcceEEEEecCCcc
Q 002299 20 NKYDVFLSFRGEDT---------RGNFTSHLFS-ALS-KKHIETFIDD-QLIRGDEISQSLLDAIEASTISVIIFSEGYA 87 (940)
Q Consensus 20 ~~~dvFis~~~~d~---------~~~f~~~l~~-~L~-~~g~~~f~d~-~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~ 87 (940)
..|||||||+++|. ++.||.++.. +|+ ++|+++|+|+ |+.+|+.+.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 36999999999996 3568888665 699 7999999998 9999999999999999999999999999997
Q ss_pred -chhhhHHHHHHHHHhh-ccCCCEEEEEEcccCCc
Q 002299 88 -SSKWCLDELLKIIDCK-NNSGQMVIPVFYRVDPS 120 (940)
Q Consensus 88 -~s~~cl~El~~~~~~~-~~~~~~v~pvf~~v~p~ 120 (940)
.|.||..|+..++.+. +.++..|+||++...+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999876 55678999999876544
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=3.1e-18 Score=181.19 Aligned_cols=181 Identities=17% Similarity=0.149 Sum_probs=118.0
Q ss_pred ccEEecCCCCCcccCc-cccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 716 LKDLDLESCGIEELPS-SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
|++|++++|.++.++. .+..+++|+.|++++|.+....+..+.++++|++|++++|......+. .+..+ ++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l-----~~ 125 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHL-----KT 125 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC---CCTTC-----TT
T ss_pred CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch---hcccC-----CC
Confidence 5555555566665554 466677777777777766666566677777777777777654322111 12223 67
Q ss_pred ceEEEcCCCCCCc-cccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCC----EEEccCCCCccCchhHHHhhhccCc
Q 002299 795 LSKLELNNCSRLE-SFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALE----ELTVEGTAMREVPESLGQLLESLPS 869 (940)
Q Consensus 795 L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~L~~n~l~~lp~~l~~l~~~lp~ 869 (940)
|++|++++|.+.. .+|..+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|.+..+|..
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~---------- 195 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---------- 195 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT----------
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc----------
Confidence 7777777776655 2466777778888888888877665555555555555 778888877665532
Q ss_pred cccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCCc
Q 002299 870 SLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRST 915 (940)
Q Consensus 870 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 915 (940)
.....+|+.|+|++|.+.+..+..+..+++|+.|++++|++.+.+
T Consensus 196 -~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 196 -AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp -SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred -ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 223346888888888776655556677888888888888776543
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=5.1e-21 Score=226.80 Aligned_cols=193 Identities=18% Similarity=0.159 Sum_probs=92.2
Q ss_pred CccEEecCCCCCcc--cCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecC----------CCCCCcCCCCCc
Q 002299 715 FLKDLDLESCGIEE--LPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISK----------CSNLRKFPEIPS 782 (940)
Q Consensus 715 ~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~~~~~~~~~~ 782 (940)
+|++|++++|.++. ++..+..+++|+.|+++++-....++..+..+++|++|++++ |+.+...
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----- 368 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----- 368 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH-----
Confidence 45555665555441 122234555566665553211122222234456666666663 3332110
Q ss_pred chhccccccCCCceEEEcCCCCCCccccCccCC-CCCccEEeeeC---CCCCCCCC------ccCCCCCCCCEEEccCCC
Q 002299 783 CIIDEAGIKRQALSKLELNNCSRLESFPSSLCM-FESLASLKIID---CPRLDGLP------DELGNLKALEELTVEGTA 852 (940)
Q Consensus 783 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~l~~---~~~~~~~~------~~l~~l~~L~~L~L~~n~ 852 (940)
.+..+ ...+++|++|+++.+.+....+..+.. +++|+.|++++ |+..+..| ..+.++++|+.|+|++|.
T Consensus 369 ~~~~l-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 369 GLIAL-AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHH-HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHH-HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 00000 012377888888666655544444443 78888888873 22222221 123446666666665432
Q ss_pred --Ccc-CchhHHH----h-----------hhccCccccCCCCCCEEeccCCCCCcc-cCCCcCCchhhhhhhccCCccCC
Q 002299 853 --MRE-VPESLGQ----L-----------LESLPSSLYKSKCLQDSYLDDCPNLHR-LPDELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 853 --l~~-lp~~l~~----l-----------~~~lp~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~ 913 (940)
++. .+..+.. + ...++..+.++++|+.|+|++|++... ++.....+++|+.|++++|....
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 221 0001100 0 011222334566777777777765432 33344556677777777776543
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=1.5e-17 Score=176.43 Aligned_cols=204 Identities=18% Similarity=0.123 Sum_probs=155.5
Q ss_pred ccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEE
Q 002299 618 VQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFEL 697 (940)
Q Consensus 618 ~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L 697 (940)
+.++++|+.++++++.+...++.+. ++|++|++++|.+....+..+..+++|++|++++|... .++....++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~----- 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLP----- 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCT-----
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCC-----
Confidence 5678899999999987654444453 68999999999877777788999999999999998543 233222222
Q ss_pred EecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcC
Q 002299 698 RLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKF 777 (940)
Q Consensus 698 ~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 777 (940)
+|++|++++|.++.+|..+..+++|+.|++++|.+....+..+.++++|+.|++++|......
T Consensus 78 -----------------~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 78 -----------------VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp -----------------TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred -----------------cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 377777777788888888888999999999998887776677888999999999987654222
Q ss_pred CCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCcc
Q 002299 778 PEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMRE 855 (940)
Q Consensus 778 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 855 (940)
+. .+..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++|++..
T Consensus 141 ~~---~~~~l-----~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 141 PG---LLTPT-----PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TT---TTTTC-----TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred hh---hcccc-----cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 21 22233 78889999888776555556678899999999999887 477778888899999999998764
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=3.2e-18 Score=180.37 Aligned_cols=231 Identities=13% Similarity=0.092 Sum_probs=162.4
Q ss_pred ccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEe
Q 002299 620 NLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRL 699 (940)
Q Consensus 620 ~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l 699 (940)
.+.++..+++..+.+ .....+..+++|+.|++++|... .+ ..+..+++|++|++++|.... ++....+++
T Consensus 17 ~~~~l~~l~l~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~------ 86 (272)
T 3rfs_A 17 AFAETIKANLKKKSV-TDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-ISALKELTN------ 86 (272)
T ss_dssp HHHHHHHHHHTCSCT-TSEECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-CGGGTTCTT------
T ss_pred hHHHHHHHHhcCccc-ccccccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-chhhcCCCC------
Confidence 345566667777643 33345677888999999887533 33 357788888888888875432 332223333
Q ss_pred cCCCCCCcCCCCCcCCccEEecCCCCCcccCcc-ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCC
Q 002299 700 SGCTSLKRFPKISSCFLKDLDLESCGIEELPSS-IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFP 778 (940)
Q Consensus 700 ~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 778 (940)
|++|++++|.++.++.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.... ++
T Consensus 87 ----------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 149 (272)
T 3rfs_A 87 ----------------LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LP 149 (272)
T ss_dssp ----------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred ----------------CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc-cC
Confidence 56666666666666554 5778888888888887776666667788888888888875432 22
Q ss_pred CCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCch
Q 002299 779 EIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPE 858 (940)
Q Consensus 779 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 858 (940)
+..+..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 150 --~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 218 (272)
T 3rfs_A 150 --KGVFDKL-----TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 218 (272)
T ss_dssp --TTTTTTC-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC----
T ss_pred --HHHhccC-----ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc----
Confidence 1122333 78888888888777666666788899999999999888876777888899999999999763
Q ss_pred hHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhh
Q 002299 859 SLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEAL 901 (940)
Q Consensus 859 ~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 901 (940)
+.+++|+.|+++.|.+.+.+|..++.++..
T Consensus 219 -------------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 219 -------------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp -------------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred -------------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 246678888888888888888887776654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=1.4e-17 Score=173.25 Aligned_cols=179 Identities=17% Similarity=0.122 Sum_probs=109.6
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
.++++++++.++.+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|......+ ..+..+ ++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l-----~~L 85 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA---GVFDDL-----TEL 85 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---TTTTTC-----TTC
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH---hHhccC-----CcC
Confidence 4556666666666665543 466666666666655555556666666666666654432211 122222 666
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCC
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSK 875 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~ 875 (940)
++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.++.+|. ..|..++
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~~~~l~ 155 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA----------GAFDKLT 155 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TTTTTCT
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH----------HHcCcCc
Confidence 666666666655555556667777777777776665444456667777777777777665552 2355667
Q ss_pred CCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCC
Q 002299 876 CLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRS 914 (940)
Q Consensus 876 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 914 (940)
+|+.|+|++|++....+..+..+++|+.|++++|.+.+.
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 777777777766655555666777777777777766553
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=6.8e-17 Score=170.04 Aligned_cols=201 Identities=18% Similarity=0.145 Sum_probs=130.5
Q ss_pred CccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc-CCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCC
Q 002299 646 NLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI-RSESLFELRLSGCTSLKRFPKISSCFLKDLDLESC 724 (940)
Q Consensus 646 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~ 724 (940)
++++++++++. +..+|..+. ++|+.|++++|......+..+ .+++ |++|++++|
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~----------------------L~~L~l~~n 71 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTK----------------------LRLLYLNDN 71 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTT----------------------CCEEECCSS
T ss_pred CCCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCC----------------------CCEEECCCC
Confidence 45677777653 334554433 456677776664433222222 2333 566666666
Q ss_pred CCcccCcc-ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCC
Q 002299 725 GIEELPSS-IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNC 803 (940)
Q Consensus 725 ~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 803 (940)
.++.+|.. +..+++|+.|++++|.+....+..+..+++|++|++++|......+ ..+..+ ++|++|++++|
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l-----~~L~~L~Ls~n 143 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---RVFDSL-----TKLTYLSLGYN 143 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---TTTTTC-----TTCCEEECCSS
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH---HHhCcC-----cCCCEEECCCC
Confidence 66666654 4667777777777776665555556777777777777765442222 222233 77888888887
Q ss_pred CCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEecc
Q 002299 804 SRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLD 883 (940)
Q Consensus 804 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~ 883 (940)
.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|+++.+|. ..+..+++|+.|+|+
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE----------GAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT----------TTTTTCTTCCEEECC
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH----------HHhccccCCCEEEec
Confidence 6665555557788888888888888877656667888888888888888877663 335667888888888
Q ss_pred CCCCCc
Q 002299 884 DCPNLH 889 (940)
Q Consensus 884 ~n~~~~ 889 (940)
+|++.-
T Consensus 214 ~N~~~c 219 (270)
T 2o6q_A 214 ENPWDC 219 (270)
T ss_dssp SSCBCC
T ss_pred CCCeeC
Confidence 887654
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=2.4e-17 Score=174.33 Aligned_cols=115 Identities=12% Similarity=0.043 Sum_probs=63.8
Q ss_pred ccccCCCcEEEecCCCCCc-ccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCce----EEEcCCCCCCc
Q 002299 733 IECLYNLRSIDLLNCTRLE-YIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALS----KLELNNCSRLE 807 (940)
Q Consensus 733 ~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~~~ 807 (940)
+..+++|+.|++++|.+.. .+|..+..+++|++|++++|...... +..+..+ ++|+ +|++++|.+..
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l-----~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY---CTDLRVL-----HQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC---GGGGHHH-----HTCTTCCEEEECCSSCCCE
T ss_pred cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC---HHHhhhh-----hhccccceeeecCCCcccc
Confidence 3444444444444444433 13444444555555555554332111 1122222 2233 66777776544
Q ss_pred cccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccC
Q 002299 808 SFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREV 856 (940)
Q Consensus 808 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l 856 (940)
..+. .....+|+.|++++|.+.+..+..+..+++|+.|+|++|++..-
T Consensus 192 ~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 192 IQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp ECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 3333 33445788888888887765555678888999999998888743
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=5.7e-17 Score=170.79 Aligned_cols=194 Identities=14% Similarity=0.087 Sum_probs=138.7
Q ss_pred CCCCCCEEEecCCCCCCcCCCCC-cCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEe
Q 002299 690 RSESLFELRLSGCTSLKRFPKIS-SCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRI 768 (940)
Q Consensus 690 ~l~~L~~L~l~~~~~l~~~~~~~-~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 768 (940)
.+++|+.|++++|. +..++.+. ..+|++|++++|.++.++ .+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 46788888888875 33333322 226888888888888765 5778888888888888777666666778888888888
Q ss_pred cCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEc
Q 002299 769 SKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTV 848 (940)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L 848 (940)
++|......+ ..+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 117 ~~n~l~~~~~---~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 117 VENQLQSLPD---GVFDKL-----TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTSCCCCCCT---TTTTTC-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCCccCH---HHhccC-----CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 8876542222 223333 78888888888776655566678888888888888887766666778888888888
Q ss_pred cCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCc
Q 002299 849 EGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKC 910 (940)
Q Consensus 849 ~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 910 (940)
++|.+..+|. ..+..+++|+.|+|++|++... +++|+.|++.+|.
T Consensus 189 ~~N~l~~~~~----------~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 189 YQNQLKSVPD----------GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINK 233 (272)
T ss_dssp CSSCCSCCCT----------TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHH
T ss_pred CCCcCCccCH----------HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHh
Confidence 8888776652 3456788888888888876543 4456777766654
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=6.2e-20 Score=204.57 Aligned_cols=260 Identities=15% Similarity=0.085 Sum_probs=166.6
Q ss_pred cccccccccCCCceeeCCCCCCCCcCC-----CcccCCCccEEeccCCCC---Cccccccc-------cCCCcccEEEec
Q 002299 613 RLWDDVQNLVNLKEIDLSDSKQLTKLP-----DLSLARNLESLDLWGCSS---LMETHSSI-------QYLNKLAFLYLV 677 (940)
Q Consensus 613 ~l~~~~~~l~~L~~L~L~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~---~~~~~~~~-------~~l~~L~~L~l~ 677 (940)
.++..+..+++|++|+|++|.+....+ .+..+++|++|+|++|.. ...+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 346677788889999999887655422 266788888888888632 22334333 567777777777
Q ss_pred CCCCCc----ccCCcc-CCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCc-----ccCcccccc---------CC
Q 002299 678 SCESLR----SLPHTI-RSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIE-----ELPSSIECL---------YN 738 (940)
Q Consensus 678 ~~~~~~----~l~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~-----~lp~~~~~l---------~~ 738 (940)
+|.... .+|..+ .++ +|++|+|++|.++ .++..+..+ ++
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~----------------------~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHT----------------------PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCT----------------------TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHhCC----------------------CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 775443 122211 122 3666666667765 233334444 88
Q ss_pred CcEEEecCCCCC-cccc---cccCCCCCCcEEEecCCCCCCc-CC-CCCcchhccccccCCCceEEEcCCCCCC----cc
Q 002299 739 LRSIDLLNCTRL-EYIA---SSIFTLKSLESIRISKCSNLRK-FP-EIPSCIIDEAGIKRQALSKLELNNCSRL----ES 808 (940)
Q Consensus 739 L~~L~l~~~~~~-~~~~---~~l~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~----~~ 808 (940)
|+.|++++|.+. ..++ ..+..+++|++|++++|..... .. ..+..+..+ ++|+.|+|++|.+. ..
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-----~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-----QELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-----TTCCEEECCSSCCHHHHHHH
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-----CCccEEECcCCCCCcHHHHH
Confidence 999999988776 3344 3566788899999988754310 00 011122233 78888888888764 55
Q ss_pred ccCccCCCCCccEEeeeCCCCCCC----CCccC--CCCCCCCEEEccCCCCcc-----CchhHHHhhhccCccccCCCCC
Q 002299 809 FPSSLCMFESLASLKIIDCPRLDG----LPDEL--GNLKALEELTVEGTAMRE-----VPESLGQLLESLPSSLYKSKCL 877 (940)
Q Consensus 809 ~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l--~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~~lp~~~~~l~~L 877 (940)
+|..+..+++|+.|+|++|.+.+. ++..+ ..+++|++|+|++|.++. +|..+. .++++|
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~----------~~l~~L 305 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID----------EKMPDL 305 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH----------HHCTTC
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH----------hcCCCc
Confidence 677778888888888888887653 45555 347888888888888875 443321 347888
Q ss_pred CEEeccCCCCCcccC--C-CcCCchhhhhhhccCC
Q 002299 878 QDSYLDDCPNLHRLP--D-ELGSLEALKRLYAEGK 909 (940)
Q Consensus 878 ~~L~L~~n~~~~~~p--~-~~~~l~~L~~L~l~~n 909 (940)
+.|+|++|++....+ . ....+++++.+++..+
T Consensus 306 ~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 306 LFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp CEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred eEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 888888888876542 1 2234566665666554
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=5e-17 Score=178.05 Aligned_cols=240 Identities=17% Similarity=0.114 Sum_probs=160.2
Q ss_pred ceeeCCCCCCCCcCC-CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc--CCCCCCEEEecC
Q 002299 625 KEIDLSDSKQLTKLP-DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI--RSESLFELRLSG 701 (940)
Q Consensus 625 ~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~--~l~~L~~L~l~~ 701 (940)
++++.+++++. .+| ++ .+++++|+|++|.+....+..|.++++|++|+|++|.+.+.+|... ++++|.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~----- 83 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE----- 83 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE-----
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh-----
Confidence 56667766544 444 34 3578888888875443333467888888888888887666665432 3444433
Q ss_pred CCCCCcCCCCCcCCccEEecCCCCCcccC-ccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCC
Q 002299 702 CTSLKRFPKISSCFLKDLDLESCGIEELP-SSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEI 780 (940)
Q Consensus 702 ~~~l~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 780 (940)
.+.+.+|.++.++ ..|..+++|+.|++++|.+....+..+....++..|++.++..+..++..
T Consensus 84 ----------------~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 84 ----------------IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp ----------------EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred ----------------hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc
Confidence 2344455666664 34677888888888887776655555556667778888776666544421
Q ss_pred CcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCC-ccCCCCCCCCEEEccCCCCccCchh
Q 002299 781 PSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLP-DELGNLKALEELTVEGTAMREVPES 859 (940)
Q Consensus 781 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~n~l~~lp~~ 859 (940)
.+... ...|+.|++++|.+. .+|.......+|+.|++++|+..+.+| +.|..+++|++|+|++|+++.+|..
T Consensus 148 --~f~~~----~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 148 --SFVGL----SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp --SSTTS----BSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred --chhhc----chhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 11111 046888899888665 455555566788999988766666666 4578889999999999998887731
Q ss_pred HHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCC
Q 002299 860 LGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 860 l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n 909 (940)
.+.+|+.|.+.+|..++.+|. +.++++|+.+++.++
T Consensus 221 -------------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 221 -------------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp -------------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred -------------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 255677777777777777885 778888888888753
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=7.5e-20 Score=216.72 Aligned_cols=336 Identities=14% Similarity=0.072 Sum_probs=218.2
Q ss_pred hccCCCcceEEEecCCCcccccCCC-------CCCCCcceEEeCCCCCchh--------hhhhhccccccccc----ccc
Q 002299 555 FSMMPELRFLKFYGQNKCMITHFEG-------APFTDVRYFEWHKSPLKSL--------NIRAENLVSLILPG----RLW 615 (940)
Q Consensus 555 f~~~~~Lr~L~l~~~~~~~i~~l~~-------~~~~~L~~L~l~~~~l~~l--------~l~~~~L~~l~l~~----~l~ 615 (940)
...+++|+.|++++|.. ..... ...+.|++|++++|.+..+ .-...+|+.+++.+ .++
T Consensus 160 ~~~~~~L~~L~L~~~~~---~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~ 236 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSF---SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236 (592)
T ss_dssp HHHCTTCSEEECTTCEE---ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH
T ss_pred HhhCCCCCEEECccccc---cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH
Confidence 35789999999998832 21111 0127899999999888622 11235666666655 355
Q ss_pred ccccccCCCceeeCCCCCCCCc----CCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccC-C-cc
Q 002299 616 DDVQNLVNLKEIDLSDSKQLTK----LPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLP-H-TI 689 (940)
Q Consensus 616 ~~~~~l~~L~~L~L~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~-~~ 689 (940)
..+.++++|++|+++.+..... ...+..+++|+.|+++++ ....+|..+..+++|++|++++|....... . ..
T Consensus 237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~ 315 (592)
T 3ogk_B 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315 (592)
T ss_dssp HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence 6677788888888875432211 123777888899988875 456677778889999999999987332222 1 13
Q ss_pred CCCCCCEEEecCCCCCCcCCCCC--cCCccEEecCC-----------CCCc--ccCccccccCCCcEEEecCCCCCcccc
Q 002299 690 RSESLFELRLSGCTSLKRFPKIS--SCFLKDLDLES-----------CGIE--ELPSSIECLYNLRSIDLLNCTRLEYIA 754 (940)
Q Consensus 690 ~l~~L~~L~l~~~~~l~~~~~~~--~~~L~~L~L~~-----------~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~ 754 (940)
.+++|++|+++++-.-..++... ..+|++|++++ +.++ .++.....+++|+.|+++.+.+....+
T Consensus 316 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred hCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 58899999998432111111111 12599999993 5565 233335668999999998777766655
Q ss_pred cccCC-CCCCcEEEecC---CCCCCcCCC---CCcchhccccccCCCceEEEcCCCC--CCccccCcc-CCCCCccEEee
Q 002299 755 SSIFT-LKSLESIRISK---CSNLRKFPE---IPSCIIDEAGIKRQALSKLELNNCS--RLESFPSSL-CMFESLASLKI 824 (940)
Q Consensus 755 ~~l~~-l~~L~~L~l~~---~~~~~~~~~---~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~~-~~l~~L~~L~l 824 (940)
..+.. +++|+.|++++ |+.++..|. ++..+.. +++|++|++++|. .....+..+ ..+++|+.|++
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-----~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L 470 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-----CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-----CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEE
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-----CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeec
Confidence 55654 89999999984 334432221 1111222 4899999998765 333222222 35899999999
Q ss_pred eCCCCCC-CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCC-CcCCchhhh
Q 002299 825 IDCPRLD-GLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPD-ELGSLEALK 902 (940)
Q Consensus 825 ~~~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~ 902 (940)
++|.+.+ .++..+..+++|++|+|++|.++.- .++..+..+++|+.|+|++|+++..-.. ....++.|.
T Consensus 471 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~---------~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER---------AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541 (592)
T ss_dssp CSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH---------HHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEE
T ss_pred cCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH---------HHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcE
Confidence 9999765 3555668899999999999997521 1112234578999999999997654222 334566666
Q ss_pred hhhccC
Q 002299 903 RLYAEG 908 (940)
Q Consensus 903 ~L~l~~ 908 (940)
...+..
T Consensus 542 ~~~~~~ 547 (592)
T 3ogk_B 542 IELIPS 547 (592)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 655554
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=1.3e-19 Score=202.07 Aligned_cols=241 Identities=15% Similarity=0.084 Sum_probs=156.4
Q ss_pred CcccCCCccEEeccCCCCCccc----cccccCCCcccEEEecCCCCC---cccCCcc--------CCCCCCEEEecCCCC
Q 002299 640 DLSLARNLESLDLWGCSSLMET----HSSIQYLNKLAFLYLVSCESL---RSLPHTI--------RSESLFELRLSGCTS 704 (940)
Q Consensus 640 ~l~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~---~~l~~~~--------~l~~L~~L~l~~~~~ 704 (940)
.+..+++|++|+|++|.+.... +..+..+++|++|++++|... ..+|..+ .+++|+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~--------- 97 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH--------- 97 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC---------
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc---------
Confidence 3667788888888888665543 334667888888888886332 1223222 234444
Q ss_pred CCcCCCCCcCCccEEecCCCCCcc-----cCccccccCCCcEEEecCCCCCcccc----cccCCC---------CCCcEE
Q 002299 705 LKRFPKISSCFLKDLDLESCGIEE-----LPSSIECLYNLRSIDLLNCTRLEYIA----SSIFTL---------KSLESI 766 (940)
Q Consensus 705 l~~~~~~~~~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l---------~~L~~L 766 (940)
+|+|++|.++. +|..+..+++|+.|+|++|.+....+ ..+..+ ++|++|
T Consensus 98 -------------~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 98 -------------TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp -------------EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred -------------EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 44444444443 66677888888888888887753322 223333 788888
Q ss_pred EecCCCCC-CcCCCCCcchhccccccCCCceEEEcCCCCCCc-----cccCccCCCCCccEEeeeCCCCC----CCCCcc
Q 002299 767 RISKCSNL-RKFPEIPSCIIDEAGIKRQALSKLELNNCSRLE-----SFPSSLCMFESLASLKIIDCPRL----DGLPDE 836 (940)
Q Consensus 767 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~ 836 (940)
++++|... ..++.+...+..+ ++|++|++++|.+.. ..+..+..+++|+.|+|++|.+. ..+|..
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~-----~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSH-----RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHC-----TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred ECCCCCCCcHHHHHHHHHHHhC-----CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 88887643 1112111233333 788888888887653 33446777888888888888874 446677
Q ss_pred CCCCCCCCEEEccCCCCccCchhHHHhhhccCccc--cCCCCCCEEeccCCCCCc----ccCCCc-CCchhhhhhhccCC
Q 002299 837 LGNLKALEELTVEGTAMREVPESLGQLLESLPSSL--YKSKCLQDSYLDDCPNLH----RLPDEL-GSLEALKRLYAEGK 909 (940)
Q Consensus 837 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~--~~l~~L~~L~L~~n~~~~----~~p~~~-~~l~~L~~L~l~~n 909 (940)
+..+++|++|+|++|.++... ...+|..+ +.+++|+.|+|++|.+.. .+|..+ .++++|+.|++++|
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~------~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARG------AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHH------HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HccCCCcCEEECCCCCCchhh------HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 778888888888888876432 12233344 337888888888888776 466665 56788888888888
Q ss_pred ccCC
Q 002299 910 CSDR 913 (940)
Q Consensus 910 ~~~~ 913 (940)
.+..
T Consensus 314 ~l~~ 317 (386)
T 2ca6_A 314 RFSE 317 (386)
T ss_dssp BSCT
T ss_pred cCCc
Confidence 7643
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.2e-18 Score=190.52 Aligned_cols=239 Identities=19% Similarity=0.259 Sum_probs=153.2
Q ss_pred cccc--CCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCcc-ccccccCCCcccEEEecCCCCCcccCCcc-CCCC
Q 002299 618 VQNL--VNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLME-THSSIQYLNKLAFLYLVSCESLRSLPHTI-RSES 693 (940)
Q Consensus 618 ~~~l--~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l~~ 693 (940)
+..+ ++++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|++++|......+..+ .+++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 4555 788899999988777777777889999999999875544 67778888899999998886544444332 3455
Q ss_pred CCEEEecCCCCCCcCCCCCcCCccEEecCCCCCc--ccCccccccCCCcEEEecCC-CCCcc-cccccCCCC-CCcEEEe
Q 002299 694 LFELRLSGCTSLKRFPKISSCFLKDLDLESCGIE--ELPSSIECLYNLRSIDLLNC-TRLEY-IASSIFTLK-SLESIRI 768 (940)
Q Consensus 694 L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l 768 (940)
|++|++++|. .++ .++..+..+++|+.|++++| .+... ++..+..++ +|++|++
T Consensus 144 L~~L~L~~~~---------------------~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 144 LVRLNLSGCS---------------------GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp CSEEECTTCB---------------------SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred CCEEECCCCC---------------------CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 5555554442 344 24555667788888888887 54433 455566777 8888888
Q ss_pred cCCC-CCCcCCCCCcchhccccccCCCceEEEcCCCC-CCccccCccCCCCCccEEeeeCCCCCC-CCCccCCCCCCCCE
Q 002299 769 SKCS-NLRKFPEIPSCIIDEAGIKRQALSKLELNNCS-RLESFPSSLCMFESLASLKIIDCPRLD-GLPDELGNLKALEE 845 (940)
Q Consensus 769 ~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 845 (940)
++|. .+.. ..++..+..+ ++|++|++++|. +....+..+..+++|+.|++++|.... .....+..+++|++
T Consensus 203 ~~~~~~~~~-~~l~~~~~~~-----~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 203 SGYRKNLQK-SDLSTLVRRC-----PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CSCGGGSCH-HHHHHHHHHC-----TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CCCcccCCH-HHHHHHHhhC-----CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 7763 1110 0112222223 778888888877 444555667778888888888886221 11124667888888
Q ss_pred EEccCCCCccCch-hHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCC
Q 002299 846 LTVEGTAMREVPE-SLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGS 897 (940)
Q Consensus 846 L~L~~n~l~~lp~-~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 897 (940)
|++++| ++. .+..+. .+|+.|++++|.+.+..|..+.+
T Consensus 277 L~l~~~----i~~~~~~~l~----------~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 277 LQVFGI----VPDGTLQLLK----------EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp EECTTS----SCTTCHHHHH----------HHSTTSEESCCCSCCTTCSSCSS
T ss_pred EeccCc----cCHHHHHHHH----------hhCcceEEecccCccccCCcccc
Confidence 888888 332 111110 23555667888887777766554
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=176.23 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=96.5
Q ss_pred cccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCc--CCCCCcchhccccccCCCceEEEcCCCCCCccccC
Q 002299 734 ECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRK--FPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPS 811 (940)
Q Consensus 734 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 811 (940)
..+++|+.|++++|.+....+..+..+++|++|++++|..... ++. +.++..+ ++|++|++++|.+. .++.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l-----~~L~~L~Ls~N~l~-~l~~ 214 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA-ALCPHKF-----PAIQNLALRNTGME-TPTG 214 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT-TSCTTSS-----CCCCSCBCCSSCCC-CHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH-HHhhhcC-----CCCCEEECCCCCCC-chHH
Confidence 3566777777777666665556666677777777776654311 000 0111122 66777777777553 2222
Q ss_pred ----ccCCCCCccEEeeeCCCCCCCCCccCCCC---CCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccC
Q 002299 812 ----SLCMFESLASLKIIDCPRLDGLPDELGNL---KALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDD 884 (940)
Q Consensus 812 ----~~~~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~ 884 (940)
.+..+++|++|++++|.+.+..|..+..+ ++|++|+|++|.++.+|. .+ .++|+.|+|++
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-----------~~--~~~L~~L~Ls~ 281 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-----------GL--PAKLRVLDLSS 281 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-----------CC--CSCCSCEECCS
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-----------hh--cCCCCEEECCC
Confidence 23566777777777777776656555554 578888888887766653 22 25777888887
Q ss_pred CCCCcccCCCcCCchhhhhhhccCCccC
Q 002299 885 CPNLHRLPDELGSLEALKRLYAEGKCSD 912 (940)
Q Consensus 885 n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 912 (940)
|++.+ +|. +..+++|+.|++++|++.
T Consensus 282 N~l~~-~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 282 NRLNR-APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCS-CCC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCC-Cch-hhhCCCccEEECcCCCCC
Confidence 77665 343 567777788888877653
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.2e-16 Score=174.94 Aligned_cols=233 Identities=17% Similarity=0.160 Sum_probs=171.9
Q ss_pred ceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhcccccccccccc-ccccccCCCceeeCCCCCCCCcCCC
Q 002299 562 RFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLW-DDVQNLVNLKEIDLSDSKQLTKLPD 640 (940)
Q Consensus 562 r~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~ 640 (940)
++++.+++ .+..+|.++..++++|++++|.|+.+ | ..|.++++|++|+|++|.+.+.+|.
T Consensus 12 ~~v~C~~~---~Lt~iP~~l~~~l~~L~Ls~N~i~~i----------------~~~~f~~l~~L~~L~Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 12 RVFLCQES---KVTEIPSDLPRNAIELRFVLTKLRVI----------------QKGAFSGFGDLEKIEISQNDVLEVIEA 72 (350)
T ss_dssp TEEEEEST---TCCSCCTTCCTTCSEEEEESCCCSEE----------------CTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred CEEEecCC---CCCccCcCcCCCCCEEEccCCcCCCc----------------CHHHHcCCCCCCEEECcCCCCCCccCh
Confidence 44555554 56778887778899999999998876 4 3588999999999999998777764
Q ss_pred --cccCCCccEE-eccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc--CCCCCCEEEecCCCCCCcCCCCCc--
Q 002299 641 --LSLARNLESL-DLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI--RSESLFELRLSGCTSLKRFPKISS-- 713 (940)
Q Consensus 641 --l~~l~~L~~L-~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~--~l~~L~~L~l~~~~~l~~~~~~~~-- 713 (940)
|.++++|.++ .+.+|......|..+..+++|++|++++|.... +|... ...++..|++.++..+..++....
T Consensus 73 ~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred hHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhh
Confidence 8899988764 455565555557788999999999999986544 44332 456778889988877776664321
Q ss_pred --CCccEEecCCCCCcccCccccccCCCcEEEecCCCCCccccc-ccCCCCCCcEEEecCCCCCCcCCCCCcchhccccc
Q 002299 714 --CFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIAS-SIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGI 790 (940)
Q Consensus 714 --~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 790 (940)
..++.|++++|.|+.+|.......+|+.|++.+|+.++.+|. .|.++++|+.|++++|.. +.+|. ..
T Consensus 152 ~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~---~~------ 221 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPS---YG------ 221 (350)
T ss_dssp SBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCS---SS------
T ss_pred cchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccCh---hh------
Confidence 257889999999998888776777888999887777777765 467888888888888643 33332 11
Q ss_pred cCCCceEEEcCCCCCCccccCccCCCCCccEEeeeC
Q 002299 791 KRQALSKLELNNCSRLESFPSSLCMFESLASLKIID 826 (940)
Q Consensus 791 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 826 (940)
+.+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 222 -~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 222 -LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp -CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred -hccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 16777777777777777774 67777777777755
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1e-16 Score=171.98 Aligned_cols=197 Identities=18% Similarity=0.201 Sum_probs=112.6
Q ss_pred ccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEE
Q 002299 618 VQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFEL 697 (940)
Q Consensus 618 ~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L 697 (940)
..++++|++|++++|.+ ..++.+..+++|++|++++|.... ++. +..+++|++|++++|.. ..++....+++
T Consensus 37 ~~~l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~l~~---- 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPL-KNVSAIAGLQS---- 108 (308)
T ss_dssp HHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCC-SCCGGGTTCTT----
T ss_pred HHHcCCcCEEEeeCCCc-cCchhhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcC-CCchhhcCCCC----
Confidence 45678888888888854 445677888888888888875443 333 77788888888887753 33333223444
Q ss_pred EecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcC
Q 002299 698 RLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKF 777 (940)
Q Consensus 698 ~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 777 (940)
|++|++++|.++.++. +..+++|+.|++++|.+....+ +..+++|+.|++++|... .
T Consensus 109 ------------------L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~- 165 (308)
T 1h6u_A 109 ------------------IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-D- 165 (308)
T ss_dssp ------------------CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-C-
T ss_pred ------------------CCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-C-
Confidence 4444444445554443 5556666666666655443322 455566666666655332 1
Q ss_pred CCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc
Q 002299 778 PEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 778 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
++. +..+ ++|+.|++++|.+....+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|+++..|
T Consensus 166 --~~~-l~~l-----~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 166 --LTP-LANL-----SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp --CGG-GTTC-----TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEECCC
T ss_pred --Chh-hcCC-----CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCCeeecCC
Confidence 111 2222 555555555554433222 45566666666666665542 2 2556666666666666665544
No 99
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.70 E-value=7.1e-16 Score=169.39 Aligned_cols=292 Identities=16% Similarity=0.088 Sum_probs=176.3
Q ss_pred cccCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhh--ccCCHH
Q 002299 185 DTFQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQ--ETGGLA 262 (940)
Q Consensus 185 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~ 262 (940)
..++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++. + .+|+....... ......
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEEHHHHHHTTTCBCHH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEEeecccccccCCCHH
Confidence 345556778999999999999998753 689999999999999999999875 2 56665432210 011233
Q ss_pred HHHHHHHHHhhC----------------CCC--CCCchhhhHHHHHhhhcC-CceEEEEeCCCChH--------H-HHHH
Q 002299 263 HLRQQLLSTLLD----------------DRN--VKNFPYIILNFQSKRFSC-KKVLIVFDDVTHLK--------Q-IEFL 314 (940)
Q Consensus 263 ~l~~~l~~~~~~----------------~~~--~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~--------~-~~~l 314 (940)
.+...+...+.. ... .........+.+.+.... ++++||+||++... . +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 333333332211 000 012333444555544432 48999999997643 2 2222
Q ss_pred HcccCCCCCCcEEEEEeCChhhhhh----------C--CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Q 002299 315 IGRLDWFASGSRIIITTRDKQVLSN----------C--RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAV 382 (940)
Q Consensus 315 ~~~l~~~~~gs~iiiTtR~~~~~~~----------~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~ 382 (940)
..... ..++.++|+|++....... . .....+.+.+|+.+|+.+++.......... ...+.+.+++
T Consensus 156 ~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 22111 1257889999987643111 1 112478999999999999998754221111 1235678999
Q ss_pred HHhcCChhhHHHHhhhhcC-CCHHHHHH-HHHHHhcCCCchHHHHHHhhhcCC---ChhhHHHHHhhhcccCCCCHHHHH
Q 002299 383 KYAKGVPLALKVLGSFLSG-RRKEEWKS-AMRKLEIVPHMEIQEVLKISYDGL---DGHEQDIFLDIACFLVGEDRDQVI 457 (940)
Q Consensus 383 ~~~~g~PLal~~~~~~l~~-~~~~~w~~-~l~~l~~~~~~~i~~~l~~s~~~L---~~~~k~~~l~la~f~~~~~~~~l~ 457 (940)
+.++|+|+++..++..+.. .+...+.. ..+. +...+.-.+..+ ++..+.++..+|+ .......+.
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV--------AKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH--------HHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHH
Confidence 9999999999998876432 22222211 1111 111111112222 7888999988887 234555555
Q ss_pred HHHHHC--CCC---chhchHHHHhccceEEeCCeeee-hHHHHHHHH
Q 002299 458 RFLDSC--GFF---PEIGLRVLVDKSLITIDYNTIKM-HDLLRDMGR 498 (940)
Q Consensus 458 ~~~~~~--~~~---~~~~l~~L~~~sll~~~~~~~~m-H~lv~~~~~ 498 (940)
..+... +.. ...+++.|.+.++|...++.|.+ |++++++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 544322 222 24568899999999887667764 888887764
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=2.6e-16 Score=168.77 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=144.4
Q ss_pred CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCcccc
Q 002299 583 TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETH 662 (940)
Q Consensus 583 ~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 662 (940)
.+|++|+++++.++.+ + .+..+++|++|+|++|.+....+ +..+++|++|++++|... .++
T Consensus 41 ~~L~~L~l~~~~i~~l----------------~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~ 101 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI----------------E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS 101 (308)
T ss_dssp HTCCEEECTTSCCCCC----------------T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG
T ss_pred CCcCEEEeeCCCccCc----------------h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch
Confidence 8899999999988765 3 57889999999999997665544 999999999999999644 444
Q ss_pred ccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEE
Q 002299 663 SSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSI 742 (940)
Q Consensus 663 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 742 (940)
.+..+++|++|++++|... .++....+++ |++|++++|.++.++. +..+++|+.|
T Consensus 102 -~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~----------------------L~~L~l~~n~l~~~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQIT-DVTPLAGLSN----------------------LQVLYLDLNQITNISP-LAGLTNLQYL 156 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCC-CCGGGTTCTT----------------------CCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred -hhcCCCCCCEEECCCCCCC-CchhhcCCCC----------------------CCEEECCCCccCcCcc-ccCCCCccEE
Confidence 6899999999999999653 3343223444 5566666666666665 7788888888
Q ss_pred EecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEE
Q 002299 743 DLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASL 822 (940)
Q Consensus 743 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 822 (940)
++++|.+... +. +..+++|+.|++++|... .++ . +..+ ++|+.|++++|.+....+ +..+++|+.|
T Consensus 157 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~---~-l~~l-----~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 222 (308)
T 1h6u_A 157 SIGNAQVSDL-TP-LANLSKLTTLKADDNKIS-DIS---P-LASL-----PNLIEVHLKNNQISDVSP--LANTSNLFIV 222 (308)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG---G-GGGC-----TTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred EccCCcCCCC-hh-hcCCCCCCEEECCCCccC-cCh---h-hcCC-----CCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence 8888866553 33 778888888888887543 222 1 3333 889999999997765443 7889999999
Q ss_pred eeeCCCCCC
Q 002299 823 KIIDCPRLD 831 (940)
Q Consensus 823 ~l~~~~~~~ 831 (940)
++++|++..
T Consensus 223 ~l~~N~i~~ 231 (308)
T 1h6u_A 223 TLTNQTITN 231 (308)
T ss_dssp EEEEEEEEC
T ss_pred EccCCeeec
Confidence 999999865
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=6.3e-16 Score=160.66 Aligned_cols=178 Identities=17% Similarity=0.107 Sum_probs=133.7
Q ss_pred CCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCc-cccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCC
Q 002299 694 LFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPS-SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCS 772 (940)
Q Consensus 694 L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 772 (940)
.++++++++. +..+|.....+++.|++++|.++.++. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 16 ~~~l~~~~~~-l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQGKS-LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTTCC-CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEEecCCCC-ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 3444444432 334444444458888888888887665 47888999999999988887777778889999999999876
Q ss_pred CCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCC
Q 002299 773 NLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTA 852 (940)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 852 (940)
.....+ ..+..+ ++|++|+|++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|+
T Consensus 95 l~~~~~---~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 95 LASLPL---GVFDHL-----TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CCCCCT---TTTTTC-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCh---hHhccc-----CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 543222 223333 889999999997776666667889999999999998887666678889999999999999
Q ss_pred CccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcc
Q 002299 853 MREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHR 890 (940)
Q Consensus 853 l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~ 890 (940)
++.+|. ..+..+++|+.|+|++|++...
T Consensus 167 l~~~~~----------~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 167 LQSVPH----------GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSCCCT----------TTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCH----------HHHhCCCCCCEEEeeCCceeCC
Confidence 887763 4566788999999999987654
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2e-16 Score=163.28 Aligned_cols=170 Identities=15% Similarity=0.100 Sum_probs=97.0
Q ss_pred ccEEecCCCC-CcccCc-cccccCCCcEEEecC-CCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 716 LKDLDLESCG-IEELPS-SIECLYNLRSIDLLN-CTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 716 L~~L~L~~~~-i~~lp~-~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
|++|++++|. ++.++. .+..+++|+.|++++ |.+....+..+.++++|++|++++|... .+|. +..+
T Consensus 57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~----~~~l----- 126 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD----LTKV----- 126 (239)
T ss_dssp CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC----CTTC-----
T ss_pred CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc----cccc-----
Confidence 4444445553 555544 356666677777766 4444444445666667777777665433 2332 2222
Q ss_pred CCce---EEEcCCC-CCCccccCccCCCCCcc-EEeeeCCCCCCCCCccCCCCCCCCEEEccCCC-CccCchhHHHhhhc
Q 002299 793 QALS---KLELNNC-SRLESFPSSLCMFESLA-SLKIIDCPRLDGLPDELGNLKALEELTVEGTA-MREVPESLGQLLES 866 (940)
Q Consensus 793 ~~L~---~L~L~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~~ 866 (940)
++|+ .|++++| .+....+..+..+++|+ .|++++|.+.. +|......++|++|++++|+ ++.+|.
T Consensus 127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~-------- 197 (239)
T 2xwt_C 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDK-------- 197 (239)
T ss_dssp CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECTTCTTCCEECT--------
T ss_pred cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcCCCCCcccCCH--------
Confidence 3444 7777777 44443344566777777 77777777663 44332233677777777773 665542
Q ss_pred cCccccCC-CCCCEEeccCCCCCcccCCCcCCchhhhhhhccCC
Q 002299 867 LPSSLYKS-KCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 867 lp~~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n 909 (940)
..|.++ ++|+.|+|++|++.. +|.. .+++|+.|++++|
T Consensus 198 --~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 198 --DAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp --TTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred --HHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 335556 777777777776654 4432 4566666666654
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=169.97 Aligned_cols=201 Identities=20% Similarity=0.158 Sum_probs=123.2
Q ss_pred ccCCCceeeCCCCCCCCcCCC-c--ccCCCccEEeccCCCCCcccc----ccccCCCcccEEEecCCCCCcccCCcc-CC
Q 002299 620 NLVNLKEIDLSDSKQLTKLPD-L--SLARNLESLDLWGCSSLMETH----SSIQYLNKLAFLYLVSCESLRSLPHTI-RS 691 (940)
Q Consensus 620 ~l~~L~~L~L~~~~~~~~~~~-l--~~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~l~~~~-~l 691 (940)
.+++|++|++++|.+....|. + ..+++|++|++++|......+ ..+..+++|++|++++|......+..+ .+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 456789999999887777764 5 788899999999887665433 344578888888888887655554444 56
Q ss_pred CCCCEEEecCCCCCCc--CC--C--CCcCCccEEecCCCCCcccCcc----ccccCCCcEEEecCCCCCcccccccCCCC
Q 002299 692 ESLFELRLSGCTSLKR--FP--K--ISSCFLKDLDLESCGIEELPSS----IECLYNLRSIDLLNCTRLEYIASSIFTLK 761 (940)
Q Consensus 692 ~~L~~L~l~~~~~l~~--~~--~--~~~~~L~~L~L~~~~i~~lp~~----~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 761 (940)
++|++|++++|..... ++ . ....+|++|++++|.++.+|.. +..+++|+.|++++|.+.+..|..+..+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 7777777777653321 10 0 0111355555555555544432 34445555555555554444343333321
Q ss_pred CCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCC
Q 002299 762 SLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLK 841 (940)
Q Consensus 762 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 841 (940)
.. ++|++|++++|.+. .+|..+. ++|+.|++++|.+.+ +|. +..++
T Consensus 249 ------------------------~~-----~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~ 294 (310)
T 4glp_A 249 ------------------------WS-----SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELP 294 (310)
T ss_dssp ------------------------CC-----TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCC
T ss_pred ------------------------Cc-----CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCC
Confidence 01 45666666666544 4454442 678888888887765 343 56778
Q ss_pred CCCEEEccCCCCc
Q 002299 842 ALEELTVEGTAMR 854 (940)
Q Consensus 842 ~L~~L~L~~n~l~ 854 (940)
+|+.|+|++|+++
T Consensus 295 ~L~~L~L~~N~l~ 307 (310)
T 4glp_A 295 EVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCEECSSTTTS
T ss_pred CccEEECcCCCCC
Confidence 8888888888775
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=6.4e-16 Score=159.38 Aligned_cols=197 Identities=12% Similarity=0.109 Sum_probs=113.2
Q ss_pred CccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCC-cc-CCCCCCEEEecCCCCCCcCCCCCcCCccEEecCC
Q 002299 646 NLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPH-TI-RSESLFELRLSGCTSLKRFPKISSCFLKDLDLES 723 (940)
Q Consensus 646 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~-~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~ 723 (940)
+|++|++++|......+..+..+++|++|++++|..++.++. .+ .+++|++|++++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~--------------------- 90 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT--------------------- 90 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE---------------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC---------------------
Confidence 566666666544443334555666666666666542333332 12 3344444333331
Q ss_pred CCCcccCc-cccccCCCcEEEecCCCCCcccccccCCCCCCc---EEEecCCCCCCcCCCCCcchhccccccCCCce-EE
Q 002299 724 CGIEELPS-SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLE---SIRISKCSNLRKFPEIPSCIIDEAGIKRQALS-KL 798 (940)
Q Consensus 724 ~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L 798 (940)
|.++.+|. .+..+++|+.|++++|.+.+ +|. +..+++|+ .|++++|..++.++. ..+..+ ++|+ .|
T Consensus 91 n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l-----~~L~~~L 161 (239)
T 2xwt_C 91 RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGL-----CNETLTL 161 (239)
T ss_dssp TTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTT-----BSSEEEE
T ss_pred CCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc--ccccch-----hcceeEE
Confidence 33444432 35556666666666655443 443 55555565 666666633332221 112222 6777 77
Q ss_pred EcCCCCCCccccCccCCCCCccEEeeeCCC-CCCCCCccCCCC-CCCCEEEccCCCCccCchhHHHhhhccCccccCCCC
Q 002299 799 ELNNCSRLESFPSSLCMFESLASLKIIDCP-RLDGLPDELGNL-KALEELTVEGTAMREVPESLGQLLESLPSSLYKSKC 876 (940)
Q Consensus 799 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~ 876 (940)
++++|.+. .+|......++|+.|++++|+ +....+..+..+ ++|+.|++++|+++.+|.. .+++
T Consensus 162 ~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-------------~~~~ 227 (239)
T 2xwt_C 162 KLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-------------GLEH 227 (239)
T ss_dssp ECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-------------TCTT
T ss_pred EcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-------------Hhcc
Confidence 77777655 444433333788888888885 665445667788 8889999998888777631 4678
Q ss_pred CCEEeccCCC
Q 002299 877 LQDSYLDDCP 886 (940)
Q Consensus 877 L~~L~L~~n~ 886 (940)
|+.|++++|.
T Consensus 228 L~~L~l~~~~ 237 (239)
T 2xwt_C 228 LKELIARNTW 237 (239)
T ss_dssp CSEEECTTC-
T ss_pred CceeeccCcc
Confidence 8888888775
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=1e-17 Score=183.01 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=169.5
Q ss_pred CCceeeCCCCCCCCcCCCcccC--CCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcc-cCCcc-CCCCCCEEE
Q 002299 623 NLKEIDLSDSKQLTKLPDLSLA--RNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRS-LPHTI-RSESLFELR 698 (940)
Q Consensus 623 ~L~~L~L~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~~-~l~~L~~L~ 698 (940)
.++.++++++.+. ...+..+ ++++.|++++|...... ..+..+++|++|++++|..... ++..+ .+++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~----- 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK----- 119 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC-----
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccc-hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC-----
Confidence 4778888887643 1225555 78888888887544443 3455677888888887754322 33222 2333
Q ss_pred ecCCCCCCcCCCCCcCCccEEecCCCCCc-ccCccccccCCCcEEEecCCC-CCc-ccccccCCCCCCcEEEecCCCCCC
Q 002299 699 LSGCTSLKRFPKISSCFLKDLDLESCGIE-ELPSSIECLYNLRSIDLLNCT-RLE-YIASSIFTLKSLESIRISKCSNLR 775 (940)
Q Consensus 699 l~~~~~l~~~~~~~~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~l~~L~~L~l~~~~~~~ 775 (940)
|++|++++|.++ ..|..+..+++|+.|++++|. +.. .++..+.++++|++|++++|..++
T Consensus 120 -----------------L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 120 -----------------LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp -----------------CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred -----------------CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 666666666665 456668889999999999994 443 366668889999999999984332
Q ss_pred cCCCCCcchhccccccCC-CceEEEcCCCC--CC-ccccCccCCCCCccEEeeeCCC-CCCCCCccCCCCCCCCEEEccC
Q 002299 776 KFPEIPSCIIDEAGIKRQ-ALSKLELNNCS--RL-ESFPSSLCMFESLASLKIIDCP-RLDGLPDELGNLKALEELTVEG 850 (940)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~ 850 (940)
.. .++..+..+ + +|++|++++|. .. ..++..+..+++|+.|++++|. +.+..+..+..+++|++|++++
T Consensus 183 ~~-~~~~~~~~l-----~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 183 EK-HVQVAVAHV-----SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp HH-HHHHHHHHS-----CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred hH-HHHHHHHhc-----ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 10 122333333 7 99999999994 33 4566667789999999999999 5556677888999999999999
Q ss_pred CCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCc-hhhhhhhccCCccC
Q 002299 851 TAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSL-EALKRLYAEGKCSD 912 (940)
Q Consensus 851 n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~l~~n~~~ 912 (940)
|. ...|..+ ..+.++++|+.|+|++| +. ...+..+ .+|..|++++|.+.
T Consensus 257 ~~-~~~~~~~--------~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 257 CY-DIIPETL--------LELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp CT-TCCGGGG--------GGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSC
T ss_pred CC-CCCHHHH--------HHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCc
Confidence 96 2222211 23567999999999999 22 2245555 35888889888654
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=1.9e-18 Score=190.38 Aligned_cols=256 Identities=11% Similarity=0.000 Sum_probs=159.0
Q ss_pred ccccccccCCCceeeCCCCCCCCcCC----C-cccCC-CccEEeccCCCCCccccccccCC-----CcccEEEecCCCCC
Q 002299 614 LWDDVQNLVNLKEIDLSDSKQLTKLP----D-LSLAR-NLESLDLWGCSSLMETHSSIQYL-----NKLAFLYLVSCESL 682 (940)
Q Consensus 614 l~~~~~~l~~L~~L~L~~~~~~~~~~----~-l~~l~-~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~ 682 (940)
+|..+....+|++|+|++|.+....+ . +..++ +|++|+|++|.+....+..+..+ ++|++|++++|...
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 34444444557777777765443332 2 45555 66666666665544444444433 56666666666433
Q ss_pred cccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCcc-----ccc-cCCCcEEEecCCCCCc----c
Q 002299 683 RSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSS-----IEC-LYNLRSIDLLNCTRLE----Y 752 (940)
Q Consensus 683 ~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~-----~~~-l~~L~~L~l~~~~~~~----~ 752 (940)
...+..+. . .+.. ...+|++|++++|.++..+.. +.. .++|+.|++++|.+.. .
T Consensus 94 ~~~~~~l~----------~-----~l~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 94 YKSSDELV----------K-----TLAA-IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp GSCHHHHH----------H-----HHHT-SCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred hHHHHHHH----------H-----HHHh-CCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 22211100 0 0000 002488888888888866542 333 3699999999998774 3
Q ss_pred cccccCCCC-CCcEEEecCCCCCCcCCCCCcchhccccccC-CCceEEEcCCCCCCc----cccCccCC-CCCccEEeee
Q 002299 753 IASSIFTLK-SLESIRISKCSNLRKFPEIPSCIIDEAGIKR-QALSKLELNNCSRLE----SFPSSLCM-FESLASLKII 825 (940)
Q Consensus 753 ~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~----~~~~~~~~-l~~L~~L~l~ 825 (940)
++..+..++ +|++|++++|..... .+..+..... .+ ++|++|+|++|.+.. .++..+.. .++|++|+|+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~---~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASK---NCAELAKFLA-SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGS---CHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HHHHHhcCCccccEeeecCCCCchh---hHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 344455665 999999999865421 2222211101 11 489999999998655 24444544 4599999999
Q ss_pred CCCCCCCCC----ccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC
Q 002299 826 DCPRLDGLP----DELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 826 ~~~~~~~~~----~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
+|.+.+..+ ..+..+++|+.|+|++|.+..++... ...++..+..+++|+.|++++|++....+
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~---~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ---CKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH---HHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHH---HHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 999877433 44578899999999999877665432 33455667789999999999999876533
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=6.4e-18 Score=186.16 Aligned_cols=242 Identities=14% Similarity=0.091 Sum_probs=155.0
Q ss_pred CCcceEEeCCCCCchhhhhhhccccccccccccccccccC-CCceeeCCCCCCCCcCCC-cccC-----CCccEEeccCC
Q 002299 583 TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLV-NLKEIDLSDSKQLTKLPD-LSLA-----RNLESLDLWGC 655 (940)
Q Consensus 583 ~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~-~L~~L~L~~~~~~~~~~~-l~~l-----~~L~~L~L~~~ 655 (940)
..|++|++++|.+...... .+...+.+++ +|++|+|++|.+....+. +..+ ++|++|+|++|
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~-----------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTV-----------ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp TTCCEEECTTSCGGGSCHH-----------HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred CCceEEEccCCCCChHHHH-----------HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 5688888888887765211 1124567777 899999999976555443 5554 89999999998
Q ss_pred CCCcccccc----ccCC-CcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCc---
Q 002299 656 SSLMETHSS----IQYL-NKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIE--- 727 (940)
Q Consensus 656 ~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~--- 727 (940)
......+.. +..+ ++|+.|++++|......+..+.- .+.. ...+|++|+|++|.++
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~------------~l~~----~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ------------AFSN----LPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH------------HHTT----SCTTCCEEECTTSCGGGSC
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH------------HHHh----CCCceeEEEccCCcCCHHH
Confidence 766555543 3344 78889999888653332211100 0000 0012666666666666
Q ss_pred --ccCccccccC-CCcEEEecCCCCCcccccc----cCCC-CCCcEEEecCCCCCCcCC-CCCcchhccccccCCCceEE
Q 002299 728 --ELPSSIECLY-NLRSIDLLNCTRLEYIASS----IFTL-KSLESIRISKCSNLRKFP-EIPSCIIDEAGIKRQALSKL 798 (940)
Q Consensus 728 --~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L 798 (940)
.++..+..++ +|+.|++++|.+....+.. +..+ ++|++|++++|.....-. .++..+... .++|++|
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~----~~~L~~L 230 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI----PNHVVSL 230 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS----CTTCCEE
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC----CCCceEE
Confidence 4445555665 8999999998876655433 3445 589999999886432100 012222221 1589999
Q ss_pred EcCCCCCCccc----cCccCCCCCccEEeeeCCCCCCC-------CCccCCCCCCCCEEEccCCCCcc
Q 002299 799 ELNNCSRLESF----PSSLCMFESLASLKIIDCPRLDG-------LPDELGNLKALEELTVEGTAMRE 855 (940)
Q Consensus 799 ~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-------~~~~l~~l~~L~~L~L~~n~l~~ 855 (940)
+|++|.+.... ...+..+++|+.|++++|.+... ++..+..+++|+.|++++|++..
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 99999776532 24457788899999999984432 33457788889999999998864
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=5.3e-18 Score=200.95 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=50.2
Q ss_pred CCCCCccEEeeeCCCCCCCCCccCCC-CCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC
Q 002299 814 CMFESLASLKIIDCPRLDGLPDELGN-LKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 814 ~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
..+++|+.|++++ .+.+..+..+.. +++|+.|+|++|.++... +. .-..++++|+.|+|++|++....+
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~--~~-------~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG--MH-------HVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH--HH-------HHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH--HH-------HHHhcCCCcCEEECcCCCCcHHHH
Confidence 3445555555544 222211112222 566667777666653211 11 111347889999999998854322
Q ss_pred -CCcCCchhhhhhhccCCcc
Q 002299 893 -DELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 893 -~~~~~l~~L~~L~l~~n~~ 911 (940)
.....+++|+.|++++|..
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhCCCCCEEeeeCCCC
Confidence 3456688999999999865
No 109
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=1.2e-15 Score=168.15 Aligned_cols=291 Identities=14% Similarity=0.074 Sum_probs=170.6
Q ss_pred ccCCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhh-hccCCHHHH
Q 002299 186 TFQSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREA-QETGGLAHL 264 (940)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~l 264 (940)
.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+...... ........+
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHH
Confidence 344566789999999999999 753 589999999999999999999876532 4676543210 000122222
Q ss_pred HHHHHHHh-------------hCCC------C----------CCCchhhhHHHHHhhhcCCceEEEEeCCCChH-----H
Q 002299 265 RQQLLSTL-------------LDDR------N----------VKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-----Q 310 (940)
Q Consensus 265 ~~~l~~~~-------------~~~~------~----------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----~ 310 (940)
...+...+ .... . .........+.+.+... ++++||+||++... +
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchh
Confidence 22222111 0000 0 01122333344433322 48999999996632 1
Q ss_pred HHHHHcccCCCCCCcEEEEEeCChhhhhh----------C-CC-CcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHH
Q 002299 311 IEFLIGRLDWFASGSRIIITTRDKQVLSN----------C-RV-DQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLT 378 (940)
Q Consensus 311 ~~~l~~~l~~~~~gs~iiiTtR~~~~~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~ 378 (940)
+..++..+....++.++|+|+|....... . +. ...+.+.+|+.+|+.+++...+.......+. .
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~ 232 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----Y 232 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----H
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----H
Confidence 21111111111247889999997643211 1 11 2578999999999999998754211111111 2
Q ss_pred HHHHHHhcCChhhHHHHhhhhcC-CCHHHHHHH-HHHHhcCCCchHHHHHH-hhh--cCCChhhHHHHHhhhcccCCCCH
Q 002299 379 HEAVKYAKGVPLALKVLGSFLSG-RRKEEWKSA-MRKLEIVPHMEIQEVLK-ISY--DGLDGHEQDIFLDIACFLVGEDR 453 (940)
Q Consensus 379 ~~i~~~~~g~PLal~~~~~~l~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~s~--~~L~~~~k~~~l~la~f~~~~~~ 453 (940)
.+|++.++|+|+++..++..+.. .+...|... .+... ..+...+. ..+ ..+++..+.++..+|+ . . +.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CH
Confidence 78999999999999999877642 233333221 11110 01111222 111 1678889999999988 2 2 55
Q ss_pred HHHHHHHH-HCC--CC---chhchHHHHhccceEEeCCeee-ehHHHHHHH
Q 002299 454 DQVIRFLD-SCG--FF---PEIGLRVLVDKSLITIDYNTIK-MHDLLRDMG 497 (940)
Q Consensus 454 ~~l~~~~~-~~~--~~---~~~~l~~L~~~sll~~~~~~~~-mH~lv~~~~ 497 (940)
..+...+. ..| .. ....++.|.+.++|...++.|+ .|++++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 55554331 223 22 2456889999999988766676 589998764
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=1.6e-15 Score=174.53 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=64.2
Q ss_pred CccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCC
Q 002299 646 NLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCG 725 (940)
Q Consensus 646 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~ 725 (940)
+|++|++++|.+. .+|..+ +++|+.|++++|.+. .+| ..+++|++|++++|.. ..+|. ...+|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l-~~ip~-l~~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRL-STLPE-LPASLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSSC
T ss_pred CccEEEeCCCCCC-ccCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCC-CCcch-hhcCCCEEECCCCc
Confidence 7888888887544 466655 367888888887543 556 2356666666666543 22444 22246666666666
Q ss_pred CcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCC
Q 002299 726 IEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCS 772 (940)
Q Consensus 726 i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 772 (940)
++.+|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred CCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence 555555 35555555555554433 333 34455555555543
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.1e-15 Score=167.90 Aligned_cols=183 Identities=15% Similarity=0.042 Sum_probs=128.3
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccC-CCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIF-TLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
-+.++++++.++.+|..+. +.++.|+|++|.+....+..+. ++++|+.|+|++|......+ ..+..+ ++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~---~~~~~l-----~~ 89 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS---EAFVPV-----PN 89 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT---TTTTTC-----TT
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh---hhccCC-----CC
Confidence 4567777777777776543 4577777777766655555555 67777777777765432222 223333 77
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCC
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKS 874 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l 874 (940)
|+.|+|++|.+....+..+..+++|+.|+|++|.+....|..|..+++|+.|+|++|.++.+|..+. ..+..+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-------~~~~~l 162 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI-------KDGNKL 162 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT-------C----C
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh-------cCcccC
Confidence 8888888887666666678888999999999998887777888889999999999999888775321 112468
Q ss_pred CCCCEEeccCCCCCcccCCCcCCchh--hhhhhccCCccCCCc
Q 002299 875 KCLQDSYLDDCPNLHRLPDELGSLEA--LKRLYAEGKCSDRST 915 (940)
Q Consensus 875 ~~L~~L~L~~n~~~~~~p~~~~~l~~--L~~L~l~~n~~~~~~ 915 (940)
++|+.|+|++|++....+..+..++. |+.|++++|++.|++
T Consensus 163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 88999999999877644456667776 478999999887764
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=5.4e-15 Score=149.85 Aligned_cols=152 Identities=18% Similarity=0.128 Sum_probs=80.9
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
-+.++++++.++.+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|......+ ..+..+ ++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~---~~~~~l-----~~L 82 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP---DAFQGL-----RSL 82 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT---TTTTTC-----SSC
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH---HHhhCC-----cCC
Confidence 4567777777777776553 677778887776665555556666666666666654332111 112222 444
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCC
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSK 875 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~ 875 (940)
++|+|++|.+....+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.++.+|. ..|..++
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------~~~~~l~ 152 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK----------GTFSPLR 152 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----------TTTTTCT
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH----------HHHhCCC
Confidence 444444444433333334455555555555555554444455555555555555555544431 2233445
Q ss_pred CCCEEeccCCCC
Q 002299 876 CLQDSYLDDCPN 887 (940)
Q Consensus 876 ~L~~L~L~~n~~ 887 (940)
+|+.|+|++|++
T Consensus 153 ~L~~L~L~~N~~ 164 (220)
T 2v9t_B 153 AIQTMHLAQNPF 164 (220)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEeCCCCc
Confidence 555555555544
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=8.1e-15 Score=168.60 Aligned_cols=189 Identities=21% Similarity=0.221 Sum_probs=151.1
Q ss_pred cccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCC
Q 002299 670 KLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTR 749 (940)
Q Consensus 670 ~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~ 749 (940)
+|+.|++++|... .+|..+ .++|++|++++|.. ..+| ....+|++|++++|.++.+|. +.. +|+.|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l-~~~L~~L~Ls~N~l-~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL-PPQITVLEITQNAL-ISLP-ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC-CTTCSEEECCSSCC-SCCC-CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCC-ccCHhH-cCCCCEEECcCCCC-cccc-cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC
Confidence 8999999999654 477755 48899999999864 4677 444579999999999999998 655 999999999887
Q ss_pred CcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCC
Q 002299 750 LEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPR 829 (940)
Q Consensus 750 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 829 (940)
.+ +|. .+++|+.|++++|... .+|. . + ++|+.|++++|.+.. +|. +. ++|+.|+|++|.+
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~---l-----~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLT-MLPE---L---P-----TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCS-CCCC---C---C-----TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred CC-CCC---cCccccEEeCCCCccC-cCCC---c---C-----CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence 76 665 6899999999998654 3443 1 2 899999999998765 776 55 8999999999998
Q ss_pred CCCCCccCCCCCCC-------CEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchh
Q 002299 830 LDGLPDELGNLKAL-------EELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEA 900 (940)
Q Consensus 830 ~~~~~~~l~~l~~L-------~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 900 (940)
. .+|. +.. +| +.|+|++|.|+.+|.. +..+++|+.|+|++|++.+.+|..+..++.
T Consensus 193 ~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-----------l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 193 E-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPEN-----------ILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp S-SCCC-CC----------CCEEEECCSSCCCCCCGG-----------GGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred C-chhh-HHH--hhhcccccceEEecCCCcceecCHH-----------HhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 7 5776 554 77 9999999999877754 445899999999999999888877666544
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=7.8e-15 Score=147.64 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=109.3
Q ss_pred CCCCCcCCccEEecCCCCCcccCcc-ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhc
Q 002299 708 FPKISSCFLKDLDLESCGIEELPSS-IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIID 786 (940)
Q Consensus 708 ~~~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 786 (940)
+|.....+|++|++++|.++.+|.. +..+++|+.|++++|.+....+..+..+++|++|++++|.... ++ +..+..
T Consensus 22 ~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~--~~~~~~ 98 (208)
T 2o6s_A 22 VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LP--NGVFDK 98 (208)
T ss_dssp CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC--TTTTTT
T ss_pred CCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cC--HhHhcC
Confidence 3333333577777777777766654 5677778888887776665555556677777777777765432 21 111222
Q ss_pred cccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhc
Q 002299 787 EAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLES 866 (940)
Q Consensus 787 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~ 866 (940)
+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 99 l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------ 161 (208)
T 2o6s_A 99 L-----TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------------ 161 (208)
T ss_dssp C-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------------
T ss_pred c-----cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------------
Confidence 3 67777777777666555555677777777777777776655555677777777777777543
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCCCcCCchh
Q 002299 867 LPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEA 900 (940)
Q Consensus 867 lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 900 (940)
+.+++|+.|+++.|.+.+.+|..++.++.
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 23556777777777777777776666554
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=3.3e-15 Score=174.02 Aligned_cols=192 Identities=19% Similarity=0.155 Sum_probs=102.9
Q ss_pred CCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCC
Q 002299 644 ARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLES 723 (940)
Q Consensus 644 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~ 723 (940)
+.++..+.+..+...... .+..+++|+.|++++|.. ..++....+++|+.|+|++|
T Consensus 20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N--------------------- 75 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGN--------------------- 75 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTS---------------------
T ss_pred HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCC---------------------
Confidence 344555566655433322 256778888888888743 44444334555555555554
Q ss_pred CCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCC
Q 002299 724 CGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNC 803 (940)
Q Consensus 724 ~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 803 (940)
.++.+|+ +..+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|.... + ..+..+ ++|+.|+|++|
T Consensus 76 -~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l----~~l~~l-----~~L~~L~Ls~N 141 (605)
T 1m9s_A 76 -KLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I----NGLVHL-----PQLESLYLGNN 141 (605)
T ss_dssp -CCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C----GGGGGC-----TTCSEEECCSS
T ss_pred -CCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C----ccccCC-----CccCEEECCCC
Confidence 4444444 5555555555555554433 22 35555556666655554321 1 122222 55666666665
Q ss_pred CCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEecc
Q 002299 804 SRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLD 883 (940)
Q Consensus 804 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~ 883 (940)
.+... ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+..+| .+..+++|+.|+|+
T Consensus 142 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~------------~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 142 KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR------------ALAGLKNLDVLELF 205 (605)
T ss_dssp CCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG------------GGTTCTTCSEEECC
T ss_pred ccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh------------HHccCCCCCEEEcc
Confidence 54432 335556666666666666554333 556666666666666655443 13445666666666
Q ss_pred CCCCCc
Q 002299 884 DCPNLH 889 (940)
Q Consensus 884 ~n~~~~ 889 (940)
+|++..
T Consensus 206 ~N~l~~ 211 (605)
T 1m9s_A 206 SQECLN 211 (605)
T ss_dssp SEEEEC
T ss_pred CCcCcC
Confidence 665544
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=9.7e-18 Score=198.68 Aligned_cols=343 Identities=13% Similarity=0.062 Sum_probs=179.6
Q ss_pred hhccCCCcceEEEecCCCcc--cccCCCC--CCCCcceEEeCCCC--Cchhhh-----hhhccccccccc-----ccccc
Q 002299 554 TFSMMPELRFLKFYGQNKCM--ITHFEGA--PFTDVRYFEWHKSP--LKSLNI-----RAENLVSLILPG-----RLWDD 617 (940)
Q Consensus 554 ~f~~~~~Lr~L~l~~~~~~~--i~~l~~~--~~~~L~~L~l~~~~--l~~l~l-----~~~~L~~l~l~~-----~l~~~ 617 (940)
.+..+++|+.|++++|.... ...++.. ..++|++|+++++. +..-.+ ...+|+.+++.+ .++..
T Consensus 151 ~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~ 230 (594)
T 2p1m_B 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL 230 (594)
T ss_dssp HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH
T ss_pred HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH
Confidence 34567888888887763111 0111111 12677888887775 211111 123344444432 12333
Q ss_pred ccccCCCceeeCCCCCCC-------CcCCCcccCCCccEE-eccCCCCCccccccccCCCcccEEEecCCCCCcccCCc-
Q 002299 618 VQNLVNLKEIDLSDSKQL-------TKLPDLSLARNLESL-DLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHT- 688 (940)
Q Consensus 618 ~~~l~~L~~L~L~~~~~~-------~~~~~l~~l~~L~~L-~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~- 688 (940)
+.++++|+.|+++.+... ...+.+.++++|+.| .+.+. ....++..+..+++|++|++++|.........
T Consensus 231 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~ 309 (594)
T 2p1m_B 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309 (594)
T ss_dssp HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence 444455555554433210 000123444444444 22221 12233444446778888888887633221111
Q ss_pred -cCCCCCCEEEecCCCCCCcCCCCC--cCCccEEecCC---------CCCcc--cCccccccCCCcEEEecCCCCCcccc
Q 002299 689 -IRSESLFELRLSGCTSLKRFPKIS--SCFLKDLDLES---------CGIEE--LPSSIECLYNLRSIDLLNCTRLEYIA 754 (940)
Q Consensus 689 -~~l~~L~~L~l~~~~~l~~~~~~~--~~~L~~L~L~~---------~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~ 754 (940)
..+++|++|++++|.....++... ..+|++|++++ +.++. +......+++|+.|.+..+.+....+
T Consensus 310 ~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~ 389 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL 389 (594)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHH
T ss_pred HhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHH
Confidence 156788888888772111111111 12488888733 34442 11112357889999777766655444
Q ss_pred cccC-CCCCCcEEEec-----CCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCC-CCCccEEeeeCC
Q 002299 755 SSIF-TLKSLESIRIS-----KCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCM-FESLASLKIIDC 827 (940)
Q Consensus 755 ~~l~-~l~~L~~L~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~l~~~ 827 (940)
..+. .+++|+.|+++ +|+.++..|. ...+... ...+++|+.|++++ .+....+..+.. +++|+.|++++|
T Consensus 390 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~~~l-~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPL-DIGFGAI-VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHHCTTCCEEEEEESSTTCCCTTTCCCT-HHHHHHH-HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHhhCCCcceeEeecccCCCcccccCCch-hhHHHHH-HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC
Confidence 4443 47899999998 4555432221 0111110 11237899999977 344433333333 788999999999
Q ss_pred CCCCCCCccC-CCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCc-CCchhhhhhh
Q 002299 828 PRLDGLPDEL-GNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDEL-GSLEALKRLY 905 (940)
Q Consensus 828 ~~~~~~~~~l-~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~ 905 (940)
.+.+..+..+ ..+++|++|+|++|.++... + ......+++|+.|++++|++...-...+ ..+++|+...
T Consensus 467 ~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~--~-------~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA--L-------LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp CSSHHHHHHHHHHCTTCCEEEEESCSCCHHH--H-------HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred CCcHHHHHHHHhcCCCcCEEECcCCCCcHHH--H-------HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 8755323233 56889999999999874221 1 1123356789999999998743222222 3455665544
Q ss_pred ccCC
Q 002299 906 AEGK 909 (940)
Q Consensus 906 l~~n 909 (940)
+.++
T Consensus 538 ~~~~ 541 (594)
T 2p1m_B 538 IDER 541 (594)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 5443
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=146.81 Aligned_cols=153 Identities=15% Similarity=0.059 Sum_probs=77.5
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccc-cccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIA-SSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
-+.+++++|.++.+|..+ .+.++.|++++|.+....+ ..+..+++|+.|++++|......+ ..+..+ ++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~---~~~~~l-----~~ 82 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE---GAFEGA-----SG 82 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT---TTTTTC-----TT
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH---HHhCCC-----CC
Confidence 456777777777777654 3455677777766555433 234555666666665544321111 111111 44
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCC
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKS 874 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l 874 (940)
|++|+|++|.+....+..+..+++|++|+|++|.+.+..|..+..+++|++|+|++|.++.++ |..|..+
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l 152 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA----------PGAFDTL 152 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC----------TTTTTTC
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC----------HHHhcCC
Confidence 444444444444333444455555555555555555444445555555555555555544432 2334445
Q ss_pred CCCCEEeccCCCCC
Q 002299 875 KCLQDSYLDDCPNL 888 (940)
Q Consensus 875 ~~L~~L~L~~n~~~ 888 (940)
++|+.|+|++|++.
T Consensus 153 ~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 153 HSLSTLNLLANPFN 166 (220)
T ss_dssp TTCCEEECCSCCEE
T ss_pred CCCCEEEecCcCCc
Confidence 55555555555443
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.7e-14 Score=143.62 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=137.2
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
-+.++.+++.++.+|..+ .++|+.|++++|.+....+..+..+++|++|++++|.... ++ +..+..+ ++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~~~~l-----~~L 78 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LP--NGVFNKL-----TSL 78 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CC--TTTTTTC-----TTC
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cC--hhhcCCC-----CCc
Confidence 567888999999999765 5699999999998887666678899999999999976542 22 1223333 899
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCC
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSK 875 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~ 875 (940)
++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+|. ..+..++
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------~~~~~l~ 148 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD----------GVFDRLT 148 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----------TTTTTCT
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH----------HHhccCC
Confidence 999999998876666667899999999999999987666678899999999999999887763 3467789
Q ss_pred CCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccC
Q 002299 876 CLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSD 912 (940)
Q Consensus 876 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 912 (940)
+|+.|+|++|++.. .+++|+.|++++|.+.
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 99999999997654 4567888888887543
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=2.1e-14 Score=146.54 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=91.1
Q ss_pred CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
..+.++.+++.++.+|..+. ++|+.|+|++|.+.+..|..+..+++|+.|++++|... .++. ..+..+ ++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~--~~~~~l-----~~ 89 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV--GVFDSL-----TQ 89 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT--TTTTTC-----TT
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcCh--hhcccC-----CC
Confidence 36778888888888887654 88899999988888777777888888888888876542 2211 111222 55
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCC
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKS 874 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l 874 (940)
|+.|+|++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++|++..+|. ..+..+
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~----------~~~~~l 158 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH----------GAFDRL 158 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT----------TTTTTC
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH----------HHHhCC
Confidence 555555555444433344455555555555555554 345455555555555555555544442 223445
Q ss_pred CCCCEEeccCCCCC
Q 002299 875 KCLQDSYLDDCPNL 888 (940)
Q Consensus 875 ~~L~~L~L~~n~~~ 888 (940)
++|+.|+|++|++.
T Consensus 159 ~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 159 SSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCCEEECTTSCBC
T ss_pred CCCCEEEeeCCCcc
Confidence 55555555555543
No 120
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.3e-14 Score=153.93 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=105.2
Q ss_pred ccCCCcccEEEecCCCCCcccCCccCCCCCCEEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEe
Q 002299 665 IQYLNKLAFLYLVSCESLRSLPHTIRSESLFELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDL 744 (940)
Q Consensus 665 ~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l 744 (940)
+..+++|+.|++++|.. ..++....+++ |++|++++|.++.++. +..+++|+.|++
T Consensus 42 ~~~l~~L~~L~l~~~~i-~~~~~~~~l~~----------------------L~~L~L~~n~l~~~~~-l~~l~~L~~L~l 97 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI-KSVQGIQYLPN----------------------VTKLFLNGNKLTDIKP-LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHTCCEEECTTSCC-CCCTTGGGCTT----------------------CCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hhhcCcccEEEccCCCc-ccChhHhcCCC----------------------CCEEEccCCccCCCcc-cccCCCCCEEEC
Confidence 45677888888888743 33343223444 5555555555555555 666666777777
Q ss_pred cCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEee
Q 002299 745 LNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKI 824 (940)
Q Consensus 745 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 824 (940)
++|.+.. ++ .+..+++|++|++++|.... + ..+..+ ++|+.|++++|.+... ..+..+++|+.|++
T Consensus 98 ~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~----~~l~~l-----~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 98 DENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I----NGLVHL-----PQLESLYLGNNKITDI--TVLSRLTKLDTLSL 163 (291)
T ss_dssp CSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C----GGGGGC-----TTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C----hhhcCC-----CCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence 6665443 22 26666677777776654331 1 123333 6677777777655443 34666777777777
Q ss_pred eCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCc
Q 002299 825 IDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLH 889 (940)
Q Consensus 825 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~ 889 (940)
++|.+.+..+ +..+++|+.|++++|.++.+|. +..+++|+.|++++|++..
T Consensus 164 ~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~------------l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 164 EDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA------------LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG------------GTTCTTCSEEEEEEEEEEC
T ss_pred cCCccccchh--hcCCCccCEEECCCCcCCCChh------------hccCCCCCEEECcCCcccC
Confidence 7777665333 6677777777777777765542 4456777777777776654
No 121
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=9e-14 Score=156.27 Aligned_cols=281 Identities=13% Similarity=0.079 Sum_probs=167.2
Q ss_pred CCCCccchhhhHHHHHHHh-hcC--C--CCeeEEEE--EecCCchhhHHHHHHHHHhhcc-----cc-ceEEEecchhhh
Q 002299 190 DNKDLVGVECRIKEIELLL-RTG--S--AGVCKLGI--WGIGGIGKTTIAGAIFTKMSKH-----FE-GSYFAHNVREAQ 256 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l-~~~--~--~~~~vv~I--~G~gGiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~~ 256 (940)
.+..|+||+.+++++..++ ... . ...+.+.| +|++|+||||||+++++..... +. ..+|+.+.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF---- 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG----
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC----
Confidence 3478999999999999888 421 1 23455666 9999999999999999876553 22 24555542
Q ss_pred ccCCHHHHHHHHHHHhhCCCC-CCCchhhhHHHHHhhhc--CCceEEEEeCCCCh--------HHHHHHHcccCCC---C
Q 002299 257 ETGGLAHLRQQLLSTLLDDRN-VKNFPYIILNFQSKRFS--CKKVLIVFDDVTHL--------KQIEFLIGRLDWF---A 322 (940)
Q Consensus 257 ~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~l~~~---~ 322 (940)
.......+..+++..+..... ...+.......+.+.+. +++++||+||++.. +.+..+...+... +
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 234556677777776643321 11223344555555553 67999999999764 2343332222111 2
Q ss_pred --CCcEEEEEeCChhhhhh---------CCCCcEEEcCCCCHHHHHHHHHHhh---cCCCCCCchhhHHHHHHHHHhc--
Q 002299 323 --SGSRIIITTRDKQVLSN---------CRVDQIYDVKELVDVDALKLFSRCA---FGEDDPTASYTKLTHEAVKYAK-- 386 (940)
Q Consensus 323 --~gs~iiiTtR~~~~~~~---------~~~~~~~~l~~L~~~ea~~Lf~~~~---~~~~~~~~~~~~~~~~i~~~~~-- 386 (940)
....||+||+...+... ......+.+++++.+++.++|..++ +... ....+....+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~---~~~~~~~~~i~~~~~~~ 252 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT---VWEPRHLELISDVYGED 252 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT---SCCHHHHHHHHHHHCGG
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC---CCChHHHHHHHHHHHHh
Confidence 34457878875543211 0112349999999999999997654 2221 122456788999999
Q ss_pred ----CChhhHHHHhhhh------cCC---CHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhhcccC----
Q 002299 387 ----GVPLALKVLGSFL------SGR---RKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIACFLV---- 449 (940)
Q Consensus 387 ----g~PLal~~~~~~l------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la~f~~---- 449 (940)
|.|..+..++... .+. +.+.+..++..... ...+..++..||+..+.++..++.+..
T Consensus 253 ~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 253 KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 9997665544321 111 23444433332110 234555678899999999988887541
Q ss_pred CCCHHHHHH----HH-HHCCCC------chhchHHHHhccceEEe
Q 002299 450 GEDRDQVIR----FL-DSCGFF------PEIGLRVLVDKSLITID 483 (940)
Q Consensus 450 ~~~~~~l~~----~~-~~~~~~------~~~~l~~L~~~sll~~~ 483 (940)
......+.. +. ...|.. ....++.|.+.++|...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 223433322 22 333322 13457889999999775
No 122
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.8e-14 Score=152.84 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=138.1
Q ss_pred CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
+|++|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.... ++ .+..+ ++
T Consensus 47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~----~l~~l-----~~ 113 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS----SLKDL-----KK 113 (291)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG----GGTTC-----TT
T ss_pred cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch----hhccC-----CC
Confidence 47888888888888865 8899999999999998776544 8899999999999986432 22 24444 89
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCC
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKS 874 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l 874 (940)
|++|++++|.+.. + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+..++. +..+
T Consensus 114 L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~------------l~~l 177 (291)
T 1h6t_A 114 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP------------LAGL 177 (291)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG------------GTTC
T ss_pred CCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh------------hcCC
Confidence 9999999998765 3 3578899999999999998864 578899999999999999987753 5678
Q ss_pred CCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 875 KCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 875 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
++|+.|+|++|.+.. +|. +..+++|+.|++++|.+
T Consensus 178 ~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 178 TKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEE
T ss_pred CccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcc
Confidence 999999999998766 454 88999999999999965
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.7e-14 Score=143.63 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=55.3
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCC-CccCchhHHHhhhccCccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTA-MREVPESLGQLLESLPSSL 871 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~~lp~~~ 871 (940)
++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|. +..+| .+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~------------~l 155 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM------------PL 155 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG------------GG
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH------------hh
Confidence 445555555554444444455555566666666655554445555555666666666665 44443 13
Q ss_pred cCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 872 YKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 872 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
..+++|+.|++++|++.. ++ .+..+++|+.|++++|.+
T Consensus 156 ~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 156 KTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred cCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 345556666666665443 23 455556666666666543
No 124
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=9.1e-15 Score=145.60 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=123.7
Q ss_pred CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
+|++|++++|.++.+| .+..+++|+.|++++|.+ ..+ ..+..+++|++|++++|...... +..+..+ ++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l-----~~ 113 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDK---IPNLSGL-----TS 113 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGG---SCCCTTC-----TT
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCccc---ChhhcCC-----CC
Confidence 6999999999999999 699999999999999844 333 46889999999999998765322 3334444 89
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCC
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKS 874 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l 874 (940)
|++|++++|.+....|..+..+++|+.|++++|...+.+| .+..+++|+.|++++|.++.++ .+..+
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~------------~l~~l 180 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR------------GIEDF 180 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT------------TGGGC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH------------HhccC
Confidence 9999999999888788889999999999999999555566 6889999999999999988765 34568
Q ss_pred CCCCEEeccCCCCC
Q 002299 875 KCLQDSYLDDCPNL 888 (940)
Q Consensus 875 ~~L~~L~L~~n~~~ 888 (940)
++|+.|++++|++.
T Consensus 181 ~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 181 PKLNQLYAFSQTIG 194 (197)
T ss_dssp SSCCEEEECBC---
T ss_pred CCCCEEEeeCcccC
Confidence 99999999999864
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=4.9e-14 Score=154.83 Aligned_cols=174 Identities=19% Similarity=0.109 Sum_probs=130.1
Q ss_pred EEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCcc-cc-ccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCC
Q 002299 696 ELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSS-IE-CLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSN 773 (940)
Q Consensus 696 ~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~-~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 773 (940)
.++++++ .+..+|......++.|+|++|.++.++.. +. .+++|+.|+|++|.+....+..|.++++|+.|+|++|..
T Consensus 22 ~l~c~~~-~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQ-QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSS-CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCC-CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 4555443 34455554555688899999999988765 44 899999999999888777777889999999999999765
Q ss_pred CCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccC---CCCCCCCEEEccC
Q 002299 774 LRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDEL---GNLKALEELTVEG 850 (940)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~ 850 (940)
....+ ..+..+ ++|+.|+|++|.+....|..+..+++|+.|+|++|.+....+..+ ..+++|+.|+|++
T Consensus 101 ~~~~~---~~~~~l-----~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 101 HTLDE---FLFSDL-----QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CEECT---TTTTTC-----TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred CcCCH---HHhCCC-----cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 43222 223333 899999999998888778889999999999999999887433444 5689999999999
Q ss_pred CCCccCchhHHHhhhccCccccCCCC--CCEEeccCCCCC
Q 002299 851 TAMREVPESLGQLLESLPSSLYKSKC--LQDSYLDDCPNL 888 (940)
Q Consensus 851 n~l~~lp~~l~~l~~~lp~~~~~l~~--L~~L~L~~n~~~ 888 (940)
|+++.+|... +..++. |+.|+|++|++.
T Consensus 173 N~l~~l~~~~----------~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKKLPLTD----------LQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCCCCHHH----------HHHSCHHHHTTEECCSSCEE
T ss_pred CCCCccCHHH----------hhhccHhhcceEEecCCCcc
Confidence 9999888422 223444 478999998864
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=9.3e-14 Score=140.69 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=123.6
Q ss_pred EEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCc--cccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCC
Q 002299 696 ELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPS--SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSN 773 (940)
Q Consensus 696 ~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 773 (940)
.++++++. +..+|......+++|++++|.++.++. .+..+++|+.|++++|.+.+..+..+.++++|++|++++|..
T Consensus 15 ~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 45555543 344555444568899999999998843 388999999999999988877777899999999999999876
Q ss_pred CCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 002299 774 LRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAM 853 (940)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l 853 (940)
.... +..+..+ ++|++|+|++|.+....|..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|++
T Consensus 94 ~~~~---~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 94 ENVQ---HKMFKGL-----ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCC---GGGGTTC-----SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccC---HhHhcCC-----cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 4322 2334444 8999999999998888888999999999999999999987789999999999999999998
Q ss_pred cc
Q 002299 854 RE 855 (940)
Q Consensus 854 ~~ 855 (940)
..
T Consensus 166 ~c 167 (220)
T 2v70_A 166 NC 167 (220)
T ss_dssp EC
T ss_pred cC
Confidence 74
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=1.4e-13 Score=139.40 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=123.0
Q ss_pred EEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCc-cccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCC
Q 002299 696 ELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPS-SIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNL 774 (940)
Q Consensus 696 ~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 774 (940)
.++.+++ .+..+|.....+++.|++++|.++.+|. .+..+++|+.|+|++|.+....|..|.++++|++|+|++|...
T Consensus 15 ~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 3444443 2444554444569999999999998876 5889999999999999988888889999999999999998654
Q ss_pred CcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc
Q 002299 775 RKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
.++. ..+..+ ++|+.|+|++|.+....|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++.
T Consensus 94 -~l~~--~~f~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 94 -ELPK--SLFEGL-----FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp -CCCT--TTTTTC-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -ccCH--hHccCC-----CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 2221 122333 89999999999988888888999999999999999999877778999999999999999886
Q ss_pred c
Q 002299 855 E 855 (940)
Q Consensus 855 ~ 855 (940)
.
T Consensus 166 c 166 (220)
T 2v9t_B 166 C 166 (220)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=6e-17 Score=187.62 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=47.0
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCC-CccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGL-PDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSL 871 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~ 871 (940)
++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.+.. |..+..+++|+.|+|++|+++.+|+.+..+ +
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l-------~ 556 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL-------A 556 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH-------H
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH-------H
Confidence 444444444443332 34 4666677777777777766644 666777777777777777776665433221 2
Q ss_pred cCCCCCCEEec
Q 002299 872 YKSKCLQDSYL 882 (940)
Q Consensus 872 ~~l~~L~~L~L 882 (940)
..+|+|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 23556666643
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=3.8e-12 Score=141.45 Aligned_cols=274 Identities=15% Similarity=0.035 Sum_probs=171.5
Q ss_pred CCccchhhhHHHHHHHhhc--CCCCeeEEEEEecCCchhhHHHHHHHHHhhcc--------ccceEEEecchhhhccC-C
Q 002299 192 KDLVGVECRIKEIELLLRT--GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH--------FEGSYFAHNVREAQETG-G 260 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~-~ 260 (940)
..++||+.+++++..++.. .....+.+.|+|++|+||||+|+.+++..... ....+|+.+. ... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR----EVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH----HHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc----cCCCC
Confidence 6899999999999887754 23345689999999999999999999976443 2234555432 223 4
Q ss_pred HHHHHHHHHHHhhCCCC--CCCchhhhHHHHHhhhcCCceEEEEeCCCChHH-------HHHHHcccCCCCCCcEEEEEe
Q 002299 261 LAHLRQQLLSTLLDDRN--VKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ-------IEFLIGRLDWFASGSRIIITT 331 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~iiiTt 331 (940)
...+..+++..+.+... ...........+.+.+..++.+||+|+++.... +..+... . .+..||+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEE
Confidence 55666666666643322 122234556666777776666999999976542 2333322 1 678899999
Q ss_pred CChhhhhhC------CCCcEEEcCCCCHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHhc---CChh-hHHHHhhh
Q 002299 332 RDKQVLSNC------RVDQIYDVKELVDVDALKLFSRCAF---GEDDPTASYTKLTHEAVKYAK---GVPL-ALKVLGSF 398 (940)
Q Consensus 332 R~~~~~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~PL-al~~~~~~ 398 (940)
+.......+ .....+.+++++.++..+++..++. ...... .+..+.+++.++ |.|. |+..+-..
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 875321111 1123899999999999999998753 222222 345677888888 8887 33332222
Q ss_pred h--c----CCCHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhhcccC-CCCHHHHHHHHHHCCCC-----
Q 002299 399 L--S----GRRKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIACFLV-GEDRDQVIRFLDSCGFF----- 466 (940)
Q Consensus 399 l--~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la~f~~-~~~~~~l~~~~~~~~~~----- 466 (940)
. . .-+.+.+..++.... ...+..+++.|+++++..+..++.... +........+....|..
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYR 321 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHH
Confidence 1 1 125677777766542 234666778999998888887776111 11112333344443321
Q ss_pred -chhchHHHHhccceEEe
Q 002299 467 -PEIGLRVLVDKSLITID 483 (940)
Q Consensus 467 -~~~~l~~L~~~sll~~~ 483 (940)
....+..|.++|++...
T Consensus 322 ~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 322 RFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 13446778899998764
No 130
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=9.4e-14 Score=161.76 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=78.2
Q ss_pred ccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCEE
Q 002299 618 VQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFEL 697 (940)
Q Consensus 618 ~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L 697 (940)
+..|.+|+.|++++|. +..++.+..+++|+.|+|++|.+....+ +..+++|+.|+|++|.. ..+|....+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC-CCChhhccCCCCCEE
Confidence 4567777888888775 3445667777888888888775444333 77777788888877743 334433345555555
Q ss_pred EecCCCCCCcCCCCCc-CCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCC
Q 002299 698 RLSGCTSLKRFPKISS-CFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKC 771 (940)
Q Consensus 698 ~l~~~~~l~~~~~~~~-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 771 (940)
+|++|... .++.+.. .+|+.|+|++|.++.+ ..+..+++|+.|+|++|.+....| +..+++|+.|+|++|
T Consensus 115 ~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 115 SLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp ECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EecCCCCC-CCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 55554322 1221111 1344444444444444 234444444444444444433322 444444444444444
No 131
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=6.9e-14 Score=145.91 Aligned_cols=169 Identities=19% Similarity=0.220 Sum_probs=119.9
Q ss_pred CCCCCEEEecCCCCCCcCCCC-CcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEec
Q 002299 691 SESLFELRLSGCTSLKRFPKI-SSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRIS 769 (940)
Q Consensus 691 l~~L~~L~l~~~~~l~~~~~~-~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 769 (940)
+.++..++++++.. ..++.. ...+|++|++++|.++.+| .+..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 18 l~~l~~l~l~~~~i-~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSV-TDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCT-TSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCc-ccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 44555666666543 222211 1125888899888888887 57888889999998887665443 7888888899888
Q ss_pred CCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEcc
Q 002299 770 KCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVE 849 (940)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~ 849 (940)
+|... .++..+. ++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+ ++ .+..+++|+.|+++
T Consensus 94 ~N~l~-~l~~~~~----------~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 94 RNRLK-NLNGIPS----------ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLH 158 (263)
T ss_dssp SSCCS-CCTTCCC----------SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECT
T ss_pred CCccC-CcCcccc----------CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECC
Confidence 87543 3332221 678888888886654 33 47788888888888888765 44 57788888888888
Q ss_pred CCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcc
Q 002299 850 GTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHR 890 (940)
Q Consensus 850 ~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~ 890 (940)
+|++..+ ..+..+++|+.|++++|++...
T Consensus 159 ~N~i~~~------------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 159 GNEITNT------------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC------------TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCcch------------HHhccCCCCCEEeCCCCcccCC
Confidence 8887665 2356788888888888887654
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=9.9e-13 Score=134.08 Aligned_cols=153 Identities=13% Similarity=0.026 Sum_probs=117.5
Q ss_pred CEEEecCCCCCCcCCCCCcCCccEEecCCCCCccc-CccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCC
Q 002299 695 FELRLSGCTSLKRFPKISSCFLKDLDLESCGIEEL-PSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSN 773 (940)
Q Consensus 695 ~~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 773 (940)
+.++.+++ .+..+|.....+|++|+|++|.++.+ |..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|..
T Consensus 22 ~~v~c~~~-~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCC-CcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 34444432 34455554445688899999999877 55688899999999999887665556678899999999999865
Q ss_pred CCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 002299 774 LRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAM 853 (940)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l 853 (940)
....+. .+..+ ++|+.|+|++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|+.|+|++|++
T Consensus 101 ~~l~~~---~~~~l-----~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 101 TVLPSA---VFDRL-----VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCTT---TTTTC-----TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CccChh---HhCcc-----hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 422222 22333 89999999999765 7788889999999999999999876667789999999999999998
Q ss_pred ccCc
Q 002299 854 REVP 857 (940)
Q Consensus 854 ~~lp 857 (940)
..-.
T Consensus 172 ~c~c 175 (229)
T 3e6j_A 172 DCEC 175 (229)
T ss_dssp CTTB
T ss_pred cCCc
Confidence 7544
No 133
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=3.1e-13 Score=140.96 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=87.0
Q ss_pred cccccCCCceeeCCCCCCCCcCCCcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCccCCCCCCE
Q 002299 617 DVQNLVNLKEIDLSDSKQLTKLPDLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTIRSESLFE 696 (940)
Q Consensus 617 ~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~ 696 (940)
.+..+++|++|++++|.+ ..++.+..+++|++|++++|.... ++. +..+++|++|++++|... .+|.... ++
T Consensus 36 ~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~~-~~--- 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIPS-AC--- 107 (263)
T ss_dssp CHHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCCC-SS---
T ss_pred chhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCcccc-Cc---
Confidence 356677777777777754 345567777777777777775443 333 777777777777777432 2332222 33
Q ss_pred EEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCc
Q 002299 697 LRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRK 776 (940)
Q Consensus 697 L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 776 (940)
|++|++++|.++.++ .+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.....
T Consensus 108 -------------------L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 108 -------------------LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp -------------------CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred -------------------ccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 555555556555554 355666666666666554432 2 355566666666666544321
Q ss_pred CCCCCcchhccccccCCCceEEEcCCCCC
Q 002299 777 FPEIPSCIIDEAGIKRQALSKLELNNCSR 805 (940)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 805 (940)
..+..+ ++|+.|++++|++
T Consensus 166 -----~~l~~l-----~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 -----GGLTRL-----KKVNWIDLTGQKC 184 (263)
T ss_dssp -----TTSTTC-----CCCCEEEEEEEEE
T ss_pred -----HHhccC-----CCCCEEeCCCCcc
Confidence 122222 5666666666654
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=4.7e-16 Score=180.13 Aligned_cols=181 Identities=18% Similarity=0.115 Sum_probs=130.4
Q ss_pred CccEEecCCCCCcccCccccccCCCcEEEecCCC-------------CCcccccccCCCCCCcEEE-ecCCCCCCcCCCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCT-------------RLEYIASSIFTLKSLESIR-ISKCSNLRKFPEI 780 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~ 780 (940)
+|+.|+|++|.++.+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.| .+..++..
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHH
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchhhhh
Confidence 3788888888888999999999999999886653 3455566667777777777 4432 11111100
Q ss_pred CcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhH
Q 002299 781 PSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESL 860 (940)
Q Consensus 781 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l 860 (940)
.-.-..+.......|+.|++++|.+.. +|. +..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+|
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp--- 502 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--- 502 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG---
T ss_pred hhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc---
Confidence 000000111112468889999886654 676 888889999999998887 57888888999999999999887665
Q ss_pred HHhhhccCccccCCCCCCEEeccCCCCCccc-CCCcCCchhhhhhhccCCcc
Q 002299 861 GQLLESLPSSLYKSKCLQDSYLDDCPNLHRL-PDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 861 ~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~ 911 (940)
.+.++++|+.|+|++|.+.+.. |..+..+++|+.|++++|.+
T Consensus 503 ---------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 503 ---------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp ---------GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred ---------ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 3457888999999998887765 88888899999999998865
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=1.3e-12 Score=129.04 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=55.5
Q ss_pred CceEEEcCCCCCCccccC-ccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 794 ALSKLELNNCSRLESFPS-SLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 794 ~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
+|+.|++++|.+....+. .+..+++|++|++++|.+.+..|..+..+++|++|+|++|.++.++ |..|.
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~~~ 99 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS----------NKMFL 99 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC----------SSSST
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC----------HHHhc
Confidence 444445544443332222 2445555555555555555544555555555555555555554433 12344
Q ss_pred CCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCC
Q 002299 873 KSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 913 (940)
++++|+.|+|++|++.+..|..+..+++|+.|++++|.+.+
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 45555555555555555555555555555555555555444
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.7e-11 Score=136.32 Aligned_cols=283 Identities=14% Similarity=0.070 Sum_probs=165.9
Q ss_pred CCCCccchhhhHHHHHHHhhcC--CCCeeEEEEEecCCchhhHHHHHHHHHhhcccc---ceEEEecchhhhccCCHHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTG--SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE---GSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l 264 (940)
.+..|+||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++.....+. ..+|+.+. .......+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~----~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR----QIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH----HHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC----CCCCHHHH
Confidence 3478999999999999988742 344567999999999999999999998766542 34555532 12344455
Q ss_pred HHHHHHHhhCCCC-CCCchhhhHHHHHhhhc--CCceEEEEeCCCChH------HHHHHHcccCC-CCCCcEEEEEeCCh
Q 002299 265 RQQLLSTLLDDRN-VKNFPYIILNFQSKRFS--CKKVLIVFDDVTHLK------QIEFLIGRLDW-FASGSRIIITTRDK 334 (940)
Q Consensus 265 ~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~iiiTtR~~ 334 (940)
...++..+..... .........+.+.+.+. +++.+||+|+++... .+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 5555554432211 11123344444444443 458999999986532 23444322211 13456678888766
Q ss_pred hhhhhCC-------CCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhc---CChhhHHHHhhhh-----
Q 002299 335 QVLSNCR-------VDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAK---GVPLALKVLGSFL----- 399 (940)
Q Consensus 335 ~~~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---g~PLal~~~~~~l----- 399 (940)
.....+. ....+.+++++.++..+++...+...........+..+.+++.++ |.|..+..+....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4322211 125899999999999999987642111111222456677888888 9998443332221
Q ss_pred -cC---CCHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhhcccC-CC---CHHHH----HHHHHHCCCC-
Q 002299 400 -SG---RRKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIACFLV-GE---DRDQV----IRFLDSCGFF- 466 (940)
Q Consensus 400 -~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la~f~~-~~---~~~~l----~~~~~~~~~~- 466 (940)
.+ -+.+.+..++.... ...+.-.+..+++..+.++..++.... +. ....+ ..+....|..
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~ 326 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEA 326 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCC
Confidence 11 14555555555432 234566678899998888888875432 21 23222 2223332322
Q ss_pred -----chhchHHHHhccceEEe
Q 002299 467 -----PEIGLRVLVDKSLITID 483 (940)
Q Consensus 467 -----~~~~l~~L~~~sll~~~ 483 (940)
....++.|.+.|++...
T Consensus 327 ~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 327 VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 13457778888888754
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=2.8e-12 Score=126.68 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..|.++++|++|+|++|.++.+| |..|.
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~----------~~~f~ 99 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP----------PRTFD 99 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC----------TTTTT
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC----------HHHhC
Confidence 45666777766543 45566677777777777777777655666777777777777777776665 23456
Q ss_pred CCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCC
Q 002299 873 KSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRS 914 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 914 (940)
.+++|+.|+|++|.+....+..+..+++|+.|++++|++.++
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 677777777777776655445677777777777777776554
No 138
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=4.7e-11 Score=132.76 Aligned_cols=279 Identities=12% Similarity=0.063 Sum_probs=165.7
Q ss_pred CCCccchhhhHHHHHHHhhcC--CCCeeEEEEEecCCchhhHHHHHHHHHhhccc------cceEEEecchhhhccCCHH
Q 002299 191 NKDLVGVECRIKEIELLLRTG--SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF------EGSYFAHNVREAQETGGLA 262 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 262 (940)
++.++||+.+++++..++... ....+.+.|+|++|+||||+|+.+++.....+ ...+|+.+ .......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA----RHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET----TTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC----CcCCCHH
Confidence 478999999999999988542 34456789999999999999999998764432 22345543 2233455
Q ss_pred HHHHHHHHHhhCCCCC-CCchhhhHHHHHhhh--cCCceEEEEeCCCChHH-------HHHHHcccCCC--CCCcEEEEE
Q 002299 263 HLRQQLLSTLLDDRNV-KNFPYIILNFQSKRF--SCKKVLIVFDDVTHLKQ-------IEFLIGRLDWF--ASGSRIIIT 330 (940)
Q Consensus 263 ~l~~~l~~~~~~~~~~-~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~-------~~~l~~~l~~~--~~gs~iiiT 330 (940)
.+...++..+...... ..........+.+.+ .+++.+||+|+++.... +..+....... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 6666666666432211 122334455555555 34688999999977542 22223222111 345678888
Q ss_pred eCChhhhhhC------CCC-cEEEcCCCCHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHhc---CChhhHH-HHh
Q 002299 331 TRDKQVLSNC------RVD-QIYDVKELVDVDALKLFSRCAF---GEDDPTASYTKLTHEAVKYAK---GVPLALK-VLG 396 (940)
Q Consensus 331 tR~~~~~~~~------~~~-~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~PLal~-~~~ 396 (940)
|+.......+ ... ..+.+++++.++..+++...+. ..... ..+..+.++++++ |.|..+. .+.
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL---DPDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB---CSSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 8765321111 111 4789999999999999988752 22221 2345677888888 9994332 222
Q ss_pred hh---hc--C---CCHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhhcccCCC---CHH----HHHHHHH
Q 002299 397 SF---LS--G---RRKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIACFLVGE---DRD----QVIRFLD 461 (940)
Q Consensus 397 ~~---l~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la~f~~~~---~~~----~l~~~~~ 461 (940)
.. .. + -+.+.+..++.... ...+.-++..|+++.+..+..++....+. ... .......
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 11 11 1 15666666665542 23455677899999998888777543332 222 2222333
Q ss_pred HCCCC------chhchHHHHhccceEEe
Q 002299 462 SCGFF------PEIGLRVLVDKSLITID 483 (940)
Q Consensus 462 ~~~~~------~~~~l~~L~~~sll~~~ 483 (940)
..|.. ....+..|...|++...
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 324 TLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 33321 12446777888888763
No 139
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=1.7e-12 Score=125.45 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=74.6
Q ss_pred CccEEecCCCCCc--ccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 715 FLKDLDLESCGIE--ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 715 ~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
+|++|++++|.++ .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|...
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~------------------ 84 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF------------------ 84 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC------------------
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc------------------
Confidence 3666666666666 6666666777777777777664443 44555666666666665433
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCC-CCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDG-LPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSL 871 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~ 871 (940)
..+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|++..+|.... ..+
T Consensus 85 --------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-------~~~ 143 (168)
T 2ell_A 85 --------------GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE-------SVF 143 (168)
T ss_dssp --------------SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHH-------HHH
T ss_pred --------------hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHH-------HHH
Confidence 22333333455566666666655441 11455566666666666666555443110 123
Q ss_pred cCCCCCCEEeccCCCCC
Q 002299 872 YKSKCLQDSYLDDCPNL 888 (940)
Q Consensus 872 ~~l~~L~~L~L~~n~~~ 888 (940)
..+++|+.|++++|...
T Consensus 144 ~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 144 KLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TTCSSCCEETTEETTSC
T ss_pred HhCccCcEecCCCCChh
Confidence 45666666666666543
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=7.9e-13 Score=158.15 Aligned_cols=184 Identities=19% Similarity=0.100 Sum_probs=75.5
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
+..++++.|.+...|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|... .+|..+..+ ++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l-----~~L 272 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT----ELPAEIKNL-----SNL 272 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS----CCCGGGGGG-----TTC
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc----ccChhhhCC-----CCC
Confidence 34444444555544555666666666666666544 45555556666666666665432 334444444 667
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccC-chhHHHh-----hhccCc
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREV-PESLGQL-----LESLPS 869 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l-----~~~lp~ 869 (940)
+.|+|++|.+. .+|..+..|++|++|+|++|.+. .+|..|..+++|+.|+|++|.+... |..+..+ .-.+..
T Consensus 273 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~ 350 (727)
T 4b8c_D 273 RVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD 350 (727)
T ss_dssp CEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhcc
Confidence 77777776655 55666777777777777777665 4666677777777777777777633 3333211 000000
Q ss_pred ---cccCCCCCCEEeccCC--------CCCcccCCCcCCchhhhhhhccCCcc
Q 002299 870 ---SLYKSKCLQDSYLDDC--------PNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 870 ---~~~~l~~L~~L~L~~n--------~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
...-...|+.|+++.| .+.+..+..+..+..+....+++|..
T Consensus 351 N~l~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 351 NRPEIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp CCCCCCCCCC-----------------------------------------CC
T ss_pred CcccCcCccccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 0112345677777766 22222233445566666677777754
No 141
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1.9e-12 Score=125.12 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=87.9
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
++|+.|++++|.+... ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.++.+|. +..+.
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~l~ 117 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST---------LEPLK 117 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGG---------GGGGS
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchh---------HHHHh
Confidence 5666666666654433 557889999999999999988788878789999999999999988762 13467
Q ss_pred CCCCCCEEeccCCCCCcccC---CCcCCchhhhhhhccCCcc
Q 002299 873 KSKCLQDSYLDDCPNLHRLP---DELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~l~~n~~ 911 (940)
.+++|+.|++++|++....+ ..+..+++|+.|++++|..
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 89999999999999876543 3788999999999999864
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=6.6e-12 Score=124.02 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=88.5
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCccccc-ccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIAS-SIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
-+.++++++.++.+|..+. .+|+.|++++|.+.+..+. .+..+++|++|++++|......| ..+..+ ++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l-----~~ 79 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP---NAFEGA-----SH 79 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT---TTTTTC-----TT
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH---hHcCCc-----cc
Confidence 4567777777777776553 3777777777665544443 36667777777777765443222 233333 67
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
|+.|+|++|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|+|++|++.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 777777777766666666778888888888888887777777888888888888888776
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=9.3e-13 Score=157.54 Aligned_cols=174 Identities=17% Similarity=0.152 Sum_probs=109.0
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEE-----ecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSID-----LLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGI 790 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~-----l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 790 (940)
++.|+|.+|.+...+..+.....|..+. +..| .....+..+..+++|+.|+|++|... .+|..+..+
T Consensus 175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n-~~~~~~~~~~~l~~L~~L~Ls~n~l~----~l~~~~~~l--- 246 (727)
T 4b8c_D 175 TPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN-RMVMPKDSKYDDQLWHALDLSNLQIF----NISANIFKY--- 246 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCS----CCCGGGGGC---
T ss_pred cceEEeeCCCCCcchhhHhhcCccCcccccCcccccc-ceecChhhhccCCCCcEEECCCCCCC----CCChhhcCC---
Confidence 4455555555554444332223333332 2222 23355777889999999999998654 345455444
Q ss_pred cCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcc
Q 002299 791 KRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSS 870 (940)
Q Consensus 791 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~ 870 (940)
++|++|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++.+| ..
T Consensus 247 --~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp-----------~~ 311 (727)
T 4b8c_D 247 --DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLP-----------WE 311 (727)
T ss_dssp --CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCC-----------SS
T ss_pred --CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccC-----------hh
Confidence 89999999999876 88888999999999999999988 68999999999999999999987666 45
Q ss_pred ccCCCCCCEEeccCCCCCcccCCCcCCchh-hhhhhccCCccC
Q 002299 871 LYKSKCLQDSYLDDCPNLHRLPDELGSLEA-LKRLYAEGKCSD 912 (940)
Q Consensus 871 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~l~~n~~~ 912 (940)
|..+++|+.|+|++|++.+.+|..+..+.. +..|++++|.+.
T Consensus 312 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 678999999999999999888876655432 234667777553
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=2.1e-10 Score=127.63 Aligned_cols=303 Identities=13% Similarity=0.065 Sum_probs=176.0
Q ss_pred CCCccchhhhHHHHHHHhhcC----CCCeeEEEEEecCCchhhHHHHHHHHHhhccc-cceEEEecchhhhccCCHHHHH
Q 002299 191 NKDLVGVECRIKEIELLLRTG----SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF-EGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
++.++||+.+++++..++... ....+.+.|+|++|+||||+|+.+++...... ...+++.+ ........+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~----~~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING----FIYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET----TTCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC----ccCCCHHHHH
Confidence 478999999999998888652 22234799999999999999999999876542 23455543 2223445666
Q ss_pred HHHHHHhhCCCC-CCCchhhhHHHHHhhhc--CCceEEEEeCCCCh--HHHHHHHcccCCCC----CCcEEEEEeCChhh
Q 002299 266 QQLLSTLLDDRN-VKNFPYIILNFQSKRFS--CKKVLIVFDDVTHL--KQIEFLIGRLDWFA----SGSRIIITTRDKQV 336 (940)
Q Consensus 266 ~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--~~~~~l~~~l~~~~----~gs~iiiTtR~~~~ 336 (940)
..++..+..... .........+.+.+.+. +++.+||+|+++.. +.+..+...+.... .+..||++|+....
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 666665543221 11223344444444442 56889999999764 33455544432211 46678888876643
Q ss_pred hhhCC-------CCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHh---------cCChhhHHHHhhhhc
Q 002299 337 LSNCR-------VDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYA---------KGVPLALKVLGSFLS 400 (940)
Q Consensus 337 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLal~~~~~~l~ 400 (940)
..... ....+.+++++.++..+++...+........-..+..+.+++.+ +|.|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 32221 12379999999999999998775321111122345677888998 788765444332211
Q ss_pred ------CC---CHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhhccc---CC--CCHHHHHHH----HHH
Q 002299 401 ------GR---RKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIACFL---VG--EDRDQVIRF----LDS 462 (940)
Q Consensus 401 ------~~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la~f~---~~--~~~~~l~~~----~~~ 462 (940)
+. +.+....+....... . +.-.+..|+.+.+.++..++.+. .+ .....+... ...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~~---~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLFG---I----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSCC---C----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhhh---h----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 11 334444444433211 1 12234567888888887777654 22 233333332 223
Q ss_pred CCCC------chhchHHHHhccceEEeC--------Cee-------eehHHHHHHHHHHHhhc
Q 002299 463 CGFF------PEIGLRVLVDKSLITIDY--------NTI-------KMHDLLRDMGREIVRKE 504 (940)
Q Consensus 463 ~~~~------~~~~l~~L~~~sll~~~~--------~~~-------~mH~lv~~~~~~~~~~~ 504 (940)
.+.. ....+..|.++++|.... +++ ..|++++.+...+..+|
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 325 YGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 3321 124578899999998741 222 24666666666555443
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=2.6e-12 Score=139.11 Aligned_cols=268 Identities=13% Similarity=0.044 Sum_probs=144.7
Q ss_pred ccCCCceeeCCCCCCCCcCCCccc-CCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCcc--C------
Q 002299 620 NLVNLKEIDLSDSKQLTKLPDLSL-ARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHTI--R------ 690 (940)
Q Consensus 620 ~l~~L~~L~L~~~~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~--~------ 690 (940)
.+.+|+.|.++++-....+..+.. +++|++|+|++|.+... ...-+.++.+..+.+..+ .+|... +
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTT----EECTTTTEEEETTEE
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEe-cCcccccccccccccccc----ccCHHHhcccccccc
Confidence 367788888887521111222444 77899999998865411 111123333455555544 233222 4
Q ss_pred --CCCCCEEEecCCCCCCcCCCCCc---CCccEEecCCCCCcccCcc-ccccCCCcEEEecCCC----CCcccccccCCC
Q 002299 691 --SESLFELRLSGCTSLKRFPKISS---CFLKDLDLESCGIEELPSS-IECLYNLRSIDLLNCT----RLEYIASSIFTL 760 (940)
Q Consensus 691 --l~~L~~L~l~~~~~l~~~~~~~~---~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~----~~~~~~~~l~~l 760 (940)
+++|+.|+|.+ .+..++.... .+|++|++.+|.+..++.. |..+.++..+.+.... ........+.++
T Consensus 98 ~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 67777777766 3333332211 1566666666666655443 4444444444332210 000111122233
Q ss_pred CCCc-EEEecCCCCCCcC----CCCCcchhcc-------------ccccCCCceEEEcCCCCCCccccCccCCCCCccEE
Q 002299 761 KSLE-SIRISKCSNLRKF----PEIPSCIIDE-------------AGIKRQALSKLELNNCSRLESFPSSLCMFESLASL 822 (940)
Q Consensus 761 ~~L~-~L~l~~~~~~~~~----~~~~~~~~~~-------------~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 822 (940)
.+|+ .+.+.....+... ...+..+..+ ....+++|+.|+|++|.+...-+..|.++++|+.|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 3333 2222211100000 0000000000 00014788888888877666556678888888888
Q ss_pred eeeCCCCCCCCCccCCCCCCCC-EEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhh
Q 002299 823 KIIDCPRLDGLPDELGNLKALE-ELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEAL 901 (940)
Q Consensus 823 ~l~~~~~~~~~~~~l~~l~~L~-~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 901 (940)
++.+| +...-+..|.++++|+ .|++.+ .++.++ +..|.++++|+.|++++|.+...-+.+|.++++|
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~----------~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE----------FGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC----------TTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc----------hhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 88886 5544556788888888 888887 565554 2557788888888888887776666688888888
Q ss_pred hhhhc
Q 002299 902 KRLYA 906 (940)
Q Consensus 902 ~~L~l 906 (940)
+.|+.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 87653
No 146
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=1.6e-12 Score=122.83 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=73.7
Q ss_pred cCCCcEEEecCCCCC-cccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccC
Q 002299 736 LYNLRSIDLLNCTRL-EYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLC 814 (940)
Q Consensus 736 l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 814 (940)
.++|+.|++++|.+. +.+|..+..+++|+.|++++|. +... ..+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--------------------------------l~~~--~~~~ 61 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--------------------------------LTSI--ANLP 61 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--------------------------------CCCC--TTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--------------------------------CCCc--hhhh
Confidence 355666666666554 3555555555666666665543 2222 3345
Q ss_pred CCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC--
Q 002299 815 MFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP-- 892 (940)
Q Consensus 815 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p-- 892 (940)
.+++|+.|++++|.+.+.+|..+..+++|++|++++|.++.+|. +..+..+++|+.|++++|++.+..+
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~---------~~~~~~l~~L~~L~l~~N~l~~~~~~~ 132 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST---------IEPLKKLENLKSLDLFNCEVTNLNDYR 132 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHH---------HGGGGGCTTCCEEECTTCGGGGSTTHH
T ss_pred cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHH---------HHHHhhCCCCCEEeCcCCcccchHHHH
Confidence 56666666666666665555555556666666666666655431 1234456666666666666554332
Q ss_pred -CCcCCchhhhhhhcc
Q 002299 893 -DELGSLEALKRLYAE 907 (940)
Q Consensus 893 -~~~~~l~~L~~L~l~ 907 (940)
..+..+++|+.|+++
T Consensus 133 ~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 133 ENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEETTB
T ss_pred HHHHHHCCCcccccCC
Confidence 245666666666654
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=3.4e-11 Score=117.33 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=73.8
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
.+.+++++++++.+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|...
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------------- 65 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--------------------- 65 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------------
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce---------------------
Confidence 567888888888887654 367888888887766555555666777777777765432
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCC
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSK 875 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~ 875 (940)
...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+|. ..+..++
T Consensus 66 -----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------~~~~~l~ 124 (177)
T 2o6r_A 66 -----------SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD----------GIFDRLT 124 (177)
T ss_dssp -----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----------TTTTTCT
T ss_pred -----------EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH----------HHhcCCc
Confidence 1112223444555555555555544333344555555555555555544442 1233455
Q ss_pred CCCEEeccCCCCCc
Q 002299 876 CLQDSYLDDCPNLH 889 (940)
Q Consensus 876 ~L~~L~L~~n~~~~ 889 (940)
+|+.|+|++|++..
T Consensus 125 ~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 125 SLQKIWLHTNPWDC 138 (177)
T ss_dssp TCCEEECCSSCBCC
T ss_pred ccCEEEecCCCeec
Confidence 55555555555544
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.6e-11 Score=118.10 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=95.1
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|. ..+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------~~~~ 97 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN----------GVFD 97 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TTTT
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH----------HHhh
Confidence 678889999888766556667899999999999999987666678999999999999999987763 3467
Q ss_pred CCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCCC
Q 002299 873 KSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDRS 914 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 914 (940)
.+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 98 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 899999999999998865555678999999999999987664
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=3.1e-11 Score=119.15 Aligned_cols=127 Identities=16% Similarity=0.096 Sum_probs=63.2
Q ss_pred cEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCce
Q 002299 717 KDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALS 796 (940)
Q Consensus 717 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 796 (940)
+.++++++.++.+|..+ .++|+.|++++|.+. .+|..+..+++|+.|++++|......+ ..+..+ ++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~---~~f~~l-----~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN---QSFSNM-----TQLL 81 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCT---TTTTTC-----TTCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCH---hHccCC-----CCCC
Confidence 45566666666666543 245666666665443 344445555555555555543321111 111111 4444
Q ss_pred EEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCc
Q 002299 797 KLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMR 854 (940)
Q Consensus 797 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 854 (940)
+|+|++|.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|++.
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 4444444444434444555555666666665555433334555556666666665543
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=3.1e-11 Score=130.65 Aligned_cols=261 Identities=13% Similarity=0.081 Sum_probs=135.9
Q ss_pred CCCcceEEEecCCCcccccCCCCCCCCcceEEeCCCCCchhhhhhhccccccccccccccccc--------cCCCceeeC
Q 002299 558 MPELRFLKFYGQNKCMITHFEGAPFTDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQN--------LVNLKEIDL 629 (940)
Q Consensus 558 ~~~Lr~L~l~~~~~~~i~~l~~~~~~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~--------l~~L~~L~L 629 (940)
+++|+.|+|++|..... ....+.+..++++.+..+.+. ...|.+ +++|+.|+|
T Consensus 48 l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~~I~------------------~~aF~~~~~~~~~g~~~L~~l~L 108 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMANFVP------------------AYAFSNVVNGVTKGKQTLEKVIL 108 (329)
T ss_dssp CTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTTEEC------------------TTTTEEEETTEEEECTTCCC-CB
T ss_pred hccCeEEecCcceeEEe-cCccccccccccccccccccC------------------HHHhcccccccccccCCCcEEEC
Confidence 67788888888732210 222222222444444444222 233455 899999999
Q ss_pred CCCCCCCcCCC-cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCC---CcccCC-cc-CCCCCC-EEEecCC
Q 002299 630 SDSKQLTKLPD-LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCES---LRSLPH-TI-RSESLF-ELRLSGC 702 (940)
Q Consensus 630 ~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---~~~l~~-~~-~l~~L~-~L~l~~~ 702 (940)
.+ .+....+. |..+++|+.|++.+|......+..|..+.++..+.+..... ...+.. .+ .+.+|+ .+.+...
T Consensus 109 ~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~ 187 (329)
T 3sb4_A 109 SE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM 187 (329)
T ss_dssp CT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT
T ss_pred Cc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC
Confidence 98 44443333 89999999999999876666667777777776665544210 011110 01 233333 2333221
Q ss_pred CCCCcCCCCCcCCccEEecCCCCCcccCccc----cccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCC
Q 002299 703 TSLKRFPKISSCFLKDLDLESCGIEELPSSI----ECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFP 778 (940)
Q Consensus 703 ~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 778 (940)
.. ++..+ ....++..+.+.++-...........+++|+.|++++|+. +.++
T Consensus 188 ~~------------------------l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i-~~I~ 242 (329)
T 3sb4_A 188 GK------------------------LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA-TTIP 242 (329)
T ss_dssp CC------------------------HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC-CEEC
T ss_pred Cc------------------------HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc-ceec
Confidence 11 11110 1123344444443211100000011244555555554332 1222
Q ss_pred CCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCcc-EEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc
Q 002299 779 EIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLA-SLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 779 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
. ..+..+ ++|+.|++.+| +...-+..|.++++|+ .|.+.+ .+...-+..|.++++|+.|++++|.++.++
T Consensus 243 ~--~aF~~~-----~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 243 D--FTFAQK-----KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp T--TTTTTC-----TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred H--hhhhCC-----CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 1 112222 55555555554 3333345677778887 888877 555445567888888888888888877766
Q ss_pred hhHHHhhhccCccccCCCCCCEEec
Q 002299 858 ESLGQLLESLPSSLYKSKCLQDSYL 882 (940)
Q Consensus 858 ~~l~~l~~~lp~~~~~l~~L~~L~L 882 (940)
. ..|.++++|+.++.
T Consensus 314 ~----------~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 314 D----------ELFGNGVPSKLIYK 328 (329)
T ss_dssp T----------TTTCTTCCCCEEEC
T ss_pred h----------hhhcCCcchhhhcc
Confidence 3 45777888887763
No 151
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.24 E-value=1.8e-10 Score=118.93 Aligned_cols=199 Identities=15% Similarity=0.058 Sum_probs=119.8
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+.+++.....+....+. + ...... ..+
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~-~-------~~~~~~-~~~ 89 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-C-------GVCDNC-REI 89 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC-C-------SCSHHH-HHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC-C-------cccHHH-HHH
Confidence 334579999999999999987643 235789999999999999999998765433211000 0 000000 000
Q ss_pred HHHhh----CCC-CCCCchhhhHHHHHhh----hcCCceEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCChhhh
Q 002299 269 LSTLL----DDR-NVKNFPYIILNFQSKR----FSCKKVLIVFDDVTH--LKQIEFLIGRLDWFASGSRIIITTRDKQVL 337 (940)
Q Consensus 269 ~~~~~----~~~-~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~ 337 (940)
..... ... ......+.....+... ..+++.+||+||++. ...++.+...+.....+..+|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000 000 0000111111112111 234678999999965 344566655544445678888888765422
Q ss_pred h-h-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhh
Q 002299 338 S-N-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFL 399 (940)
Q Consensus 338 ~-~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 399 (940)
. . ......+.+++++.++..+++...+..... .-..+..+.|++.++|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1 122468999999999999999887743222 1123567889999999999888765443
No 152
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=7.3e-12 Score=118.22 Aligned_cols=128 Identities=13% Similarity=0.064 Sum_probs=83.3
Q ss_pred CccEEecCCCCCc--ccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccC
Q 002299 715 FLKDLDLESCGIE--ELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKR 792 (940)
Q Consensus 715 ~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 792 (940)
+|+.|++++|.++ .+|..+..+++|+.|++++|.+... ..+..+++|+.|++++|...
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~------------------ 77 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS------------------ 77 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC------------------
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc------------------
Confidence 4888999999988 8888889999999999999876654 55666777777777766443
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCC-CCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDG-LPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSL 871 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~ 871 (940)
..+|..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|+++.+|.... ..+
T Consensus 78 --------------~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-------~~~ 136 (149)
T 2je0_A 78 --------------GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE-------NVF 136 (149)
T ss_dssp --------------SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHH-------HHH
T ss_pred --------------chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHH-------HHH
Confidence 22333333455566666666665441 22556666777777777776665553100 123
Q ss_pred cCCCCCCEEecc
Q 002299 872 YKSKCLQDSYLD 883 (940)
Q Consensus 872 ~~l~~L~~L~L~ 883 (940)
..+++|+.|+++
T Consensus 137 ~~l~~L~~L~l~ 148 (149)
T 2je0_A 137 KLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEETTB
T ss_pred HHCCCcccccCC
Confidence 446667777665
No 153
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.2e-11 Score=120.49 Aligned_cols=107 Identities=11% Similarity=0.047 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..+|.. ..+.
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---------~~l~ 110 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL---------DPLA 110 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGG---------GGGG
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhh---------Hhhh
Confidence 3666666666655443 4566777777777777777653333346777777777777777665530 1344
Q ss_pred CCCCCCEEeccCCCCCcccCCC----cCCchhhhhhhccCCcc
Q 002299 873 KSKCLQDSYLDDCPNLHRLPDE----LGSLEALKRLYAEGKCS 911 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p~~----~~~l~~L~~L~l~~n~~ 911 (940)
.+++|+.|++++|++.. +|.. +..+++|+.|++++|..
T Consensus 111 ~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 67777777777777653 4553 67777777777777643
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=1.9e-10 Score=110.90 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=55.8
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCC
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSK 875 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~ 875 (940)
+.+++++|.+. .+|..+ .++|+.|+|++|.+.+..|..|..+++|++|+|++|+++.+|. ..|.+++
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----------~~f~~l~ 78 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------GVFDKLT 78 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT----------TTTTTCT
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh----------hhccCCC
Confidence 44555554332 234322 2555666666665555445555556666666666665555442 2234555
Q ss_pred CCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCC
Q 002299 876 CLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 876 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 913 (940)
+|+.|+|++|++.+..+..+..+++|+.|++++|.+.+
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66666666665554434445566666666666665543
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=2.3e-10 Score=110.63 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=53.5
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCC
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSK 875 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~ 875 (940)
+.+++++|.+ +.+|..+. ++|+.|+|++|.+.+..|..+..+++|++|+|++|+++.+|. ..|.+++
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----------~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT----------GVFDKLT 81 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TTTTTCT
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh----------hHhCCcc
Confidence 3444444432 33343332 455555555555555445555555555555555555554442 1234455
Q ss_pred CCCEEeccCCCCCcccCCCcCCchhhhhhhccCCccCC
Q 002299 876 CLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCSDR 913 (940)
Q Consensus 876 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 913 (940)
+|+.|+|++|.+....+..+..+++|+.|++++|.+.+
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 55556665555544333345555556666666655443
No 156
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=8.6e-10 Score=112.00 Aligned_cols=184 Identities=13% Similarity=0.095 Sum_probs=113.9
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccce-EEEecchhhhccCCHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGS-YFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~-~~~~~~~~~~~~~~~~~l~~ 266 (940)
.....++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++.+... +... +.+.. ........+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 87 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA----SDERGIDVVRH 87 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET----TCTTCHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc----ccccChHHHHH
Confidence 345679999999999999987643 2338999999999999999999876433 2222 22221 11112222211
Q ss_pred HHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChhhh-hh-CCC
Q 002299 267 QLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDKQVL-SN-CRV 342 (940)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~~~-~~-~~~ 342 (940)
.+....... ....+++.+||+||++.. ...+.+...+.....+.++|+||+..... .. ...
T Consensus 88 -~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 88 -KIKEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp -HHHHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred -HHHHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 111111110 011246889999999764 33444443333345678889888765321 11 122
Q ss_pred CcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 343 DQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
...+.+++++.++..+++.+.+...... -..+..+.+++.++|.|..+..+
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3488999999999999998876432211 22356778889999999865544
No 157
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=1e-10 Score=113.79 Aligned_cols=88 Identities=17% Similarity=0.097 Sum_probs=59.3
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCc--cCCCCCCCCEEEccCCCCccCchhHHHhhhccCcc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPD--ELGNLKALEELTVEGTAMREVPESLGQLLESLPSS 870 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~ 870 (940)
++|++|++++|.+....+..+..+++|+.|++++|.+.. +|. .+..+++|+.|++++|++..+|.... ..
T Consensus 64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~-------~~ 135 (176)
T 1a9n_A 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRL-------YV 135 (176)
T ss_dssp SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHH-------HH
T ss_pred CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHH-------HH
Confidence 566666666665543333334677888888888887754 554 67788888888888888877664311 01
Q ss_pred ccCCCCCCEEeccCCCCC
Q 002299 871 LYKSKCLQDSYLDDCPNL 888 (940)
Q Consensus 871 ~~~l~~L~~L~L~~n~~~ 888 (940)
+..+++|+.|++++|...
T Consensus 136 ~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 136 IYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCTTCSEETTEECCHH
T ss_pred HHHCCccceeCCCcCCHH
Confidence 445788888888888654
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.12 E-value=3.4e-09 Score=117.02 Aligned_cols=170 Identities=9% Similarity=0.094 Sum_probs=88.9
Q ss_pred CccEEecCCCCCcccCcc-ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCC
Q 002299 715 FLKDLDLESCGIEELPSS-IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQ 793 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (940)
+|+.+.+.. .++.++.. |..+++|+.+++..+ +...-...|.+ .+|+.+.+.++ ++.++. ..+..+ +
T Consensus 204 ~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~--~aF~~c-----~ 271 (401)
T 4fdw_A 204 GIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG--VTNIAS--RAFYYC-----P 271 (401)
T ss_dssp CCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT--CCEECT--TTTTTC-----T
T ss_pred ccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC--ccEECh--hHhhCC-----C
Confidence 355555542 24444432 555666666666542 22222333444 55666666431 222211 112222 5
Q ss_pred CceEEEcCCCCCC-----ccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccC
Q 002299 794 ALSKLELNNCSRL-----ESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLP 868 (940)
Q Consensus 794 ~L~~L~L~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp 868 (940)
+|+.+.+.++... ..-+..|.++++|+.+.|.+ .+...-...|.++++|+.+.|.+| ++.++ +
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~----------~ 339 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN----------F 339 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC----------T
T ss_pred CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc----------H
Confidence 6666666554332 23344566777777777763 344334456667777777777544 44443 2
Q ss_pred ccccCCCCCCEEeccCCCCCcccCCCcCCch-hhhhhhccCC
Q 002299 869 SSLYKSKCLQDSYLDDCPNLHRLPDELGSLE-ALKRLYAEGK 909 (940)
Q Consensus 869 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~l~~n 909 (940)
..|.++ +|+.+++.+|......+..|.+++ ++..|++..+
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 346666 777777777766554455566663 5566666554
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=7.1e-09 Score=114.48 Aligned_cols=238 Identities=15% Similarity=0.126 Sum_probs=160.4
Q ss_pred ccCCCceeeCCCCCCCCcCCC--cccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCc-c-CCCCCC
Q 002299 620 NLVNLKEIDLSDSKQLTKLPD--LSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHT-I-RSESLF 695 (940)
Q Consensus 620 ~l~~L~~L~L~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~-~l~~L~ 695 (940)
.+..++.+.+.++ .+.++. |.++ +|+.+.+..+ ........|.+ .+|+.+.+.. .+..++.. + ++.
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~--- 180 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCY--- 180 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCT---
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcc---
Confidence 3466777777664 333332 6553 6777777654 22222334444 3466666553 12222211 1 122
Q ss_pred EEEecCCCCCCcCCCCCcCCccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCC
Q 002299 696 ELRLSGCTSLKRFPKISSCFLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLR 775 (940)
Q Consensus 696 ~L~l~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 775 (940)
+|+.+++.+|.++.+|.......+|+.+.+.+ ++...-...|.++++|+.+.+..+ ++
T Consensus 181 -------------------~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~ 238 (401)
T 4fdw_A 181 -------------------NLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VS 238 (401)
T ss_dssp -------------------TCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CC
T ss_pred -------------------cCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--cc
Confidence 47777888888888887754578999999986 455555667889999999999863 33
Q ss_pred cCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCC-----CCCCccCCCCCCCCEEEccC
Q 002299 776 KFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRL-----DGLPDELGNLKALEELTVEG 850 (940)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~L~~ 850 (940)
.++.. .+. ..+|+.+.+.++ ....-...|..+++|+.+.+.++... ...+..|.++++|+.+.|.+
T Consensus 239 ~I~~~--aF~------~~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 239 TIGQE--AFR------ESGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp EECTT--TTT------TCCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred Ccccc--ccc------cCCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 33321 111 167999999543 44455678899999999999998764 23456789999999999995
Q ss_pred CCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCcc
Q 002299 851 TAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 851 n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
.++.++. ..|.++++|+.+.|..+ +...-+.+|.++ +|+.|++.+|..
T Consensus 310 -~i~~I~~----------~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 310 -SIRILGQ----------GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp -TCCEECT----------TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred -ceEEEhh----------hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 4766653 45889999999999765 555446689999 999999999854
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.02 E-value=1.4e-08 Score=112.71 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=29.8
Q ss_pred eEEeChhhhccCCCcceEEEecCCCcccccCCCCCC---CCcceEEeCCC
Q 002299 547 EIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKS 593 (940)
Q Consensus 547 ~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~ 593 (940)
...+...+|.++.+|+.+.+..+ +..+....+ .+|+.+++..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIPDS 104 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeCCC
Confidence 44678889999999999988643 344554444 67777777543
No 161
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1.3e-12 Score=129.97 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=31.4
Q ss_pred ccEEecCCC--CCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCC
Q 002299 716 LKDLDLESC--GIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCS 772 (940)
Q Consensus 716 L~~L~L~~~--~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 772 (940)
++.+.+.++ .++.+|..+..+++|+.|++++|.+.. +| .+..+++|+.|++++|.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~ 81 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL 81 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC
Confidence 444444443 444555566667777777776665444 44 45556666666666653
No 162
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=2.2e-09 Score=103.35 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=76.3
Q ss_pred CccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCC
Q 002299 715 FLKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQA 794 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (940)
..+.+++++|.++.+|..+ .++|+.|+|++|.+.+..|..+.++++|++|+|++|.
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~---------------------- 65 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ---------------------- 65 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----------------------
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC----------------------
Confidence 3677888888888888765 3777888888777666656666666666666666543
Q ss_pred ceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCch
Q 002299 795 LSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPE 858 (940)
Q Consensus 795 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 858 (940)
+....+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++...+.
T Consensus 66 ----------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 66 ----------LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ----------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ----------cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 222223345677788888888888776555567888888888888888775554
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=3.3e-09 Score=102.49 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=77.0
Q ss_pred ccEEecCCCCCcccCccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCc
Q 002299 716 LKDLDLESCGIEELPSSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQAL 795 (940)
Q Consensus 716 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 795 (940)
-+.+++++|.++.+|..+. ++|+.|+|++|.+.+..|..+.++++|+.|+|++|.
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~----------------------- 68 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK----------------------- 68 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----------------------
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-----------------------
Confidence 4678888888888887653 778888888877666656666666666666666543
Q ss_pred eEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHH
Q 002299 796 SKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLG 861 (940)
Q Consensus 796 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~ 861 (940)
+....+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++...+..+.
T Consensus 69 ---------l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 69 ---------LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp ---------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred ---------CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 222222335667788888888888776444557888888888888888877665443
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=5.2e-09 Score=112.87 Aligned_cols=184 Identities=16% Similarity=0.224 Sum_probs=112.0
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccc-eEEEecchhhhccCCHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEG-SYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~l~~ 266 (940)
.....++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+... +.. .+++.. ........+ +
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~----~~~~~~~~i-~ 90 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA----SDDRGIDVV-R 90 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT----TSCCSHHHH-H
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC----ccccChHHH-H
Confidence 344679999999999999987643 2238899999999999999999976432 221 233322 111122211 1
Q ss_pred HHHHHhhCCCCCCCchhhhHHHHHhhh-cCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChhh-hhh-CC
Q 002299 267 QLLSTLLDDRNVKNFPYIILNFQSKRF-SCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDKQV-LSN-CR 341 (940)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~~-~~~-~~ 341 (940)
.++..+.... ..+ .+++.++|+||++.. ...+.+...+.....++++|+||+.... ... ..
T Consensus 91 ~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 91 NQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp THHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 1211111000 011 345789999999763 3333343333333567788888876432 111 12
Q ss_pred CCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhh-HHHH
Q 002299 342 VDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLA-LKVL 395 (940)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa-l~~~ 395 (940)
....+.+++++.++..+++...+...... -..+....+++.++|.|.. +..+
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23589999999999999998876322111 1235678899999999954 4443
No 165
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.94 E-value=7.9e-12 Score=124.30 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=90.0
Q ss_pred cCCCcEEEecCCCCCccccc------ccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccc
Q 002299 736 LYNLRSIDLLNCTRLEYIAS------SIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESF 809 (940)
Q Consensus 736 l~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 809 (940)
...++.++++.+.+.+..|. .+..+++|+.|++++|... . +| .+..+ ++|+.|++++|.+. .+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~---l~-~~~~l-----~~L~~L~l~~n~l~-~l 85 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-K---IS-SLSGM-----ENLRILSLGRNLIK-KI 85 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-C---CC-CHHHH-----TTCCEEEEEEEEEC-SC
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-c---cc-ccccC-----CCCCEEECCCCCcc-cc
Confidence 34444444444444333333 6667777777777776433 2 23 44444 67777777777544 45
Q ss_pred cCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCc
Q 002299 810 PSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLH 889 (940)
Q Consensus 810 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~ 889 (940)
|..+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+..+|.- ..+..+++|+.|++++|++..
T Consensus 86 ~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~---------~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 86 ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEI---------DKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHH---------HHHTTTTTCSEEEECSCHHHH
T ss_pred cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHH---------HHHhcCCCCCEEEecCCcccc
Confidence 6555566777777777777665 44 466677777777777777655420 124457777777777777665
Q ss_pred ccCCC----------cCCchhhhhhh
Q 002299 890 RLPDE----------LGSLEALKRLY 905 (940)
Q Consensus 890 ~~p~~----------~~~l~~L~~L~ 905 (940)
..|.. +..+++|+.|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 155 DYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccccchHHHHHHHHHhCCCcEEEC
Confidence 54432 56677777665
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=4.1e-11 Score=131.10 Aligned_cols=167 Identities=15% Similarity=0.072 Sum_probs=111.6
Q ss_pred CccEEecCCCCCcccC-----cccc-ccCCCcEEEecCCCCCccccccc-CCCCCCcEEEecCCCCCCcCCCCCcchhcc
Q 002299 715 FLKDLDLESCGIEELP-----SSIE-CLYNLRSIDLLNCTRLEYIASSI-FTLKSLESIRISKCSNLRKFPEIPSCIIDE 787 (940)
Q Consensus 715 ~L~~L~L~~~~i~~lp-----~~~~-~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 787 (940)
+|++|+|++|.++... ..+. ..++|+.|+|++|.+.......+ ..+++|+.|+|++|.... .....+...
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~---~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP---EACKDLRDL 149 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH---HHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH---HHHHHHHHH
Confidence 5899999999988432 2222 23689999999998755333222 235689999999985431 111111111
Q ss_pred ccccCCCceEEEcCCCCCCc----cccCccCCCCCccEEeeeCCCCCC----CCCccCCCCCCCCEEEccCCCCccCchh
Q 002299 788 AGIKRQALSKLELNNCSRLE----SFPSSLCMFESLASLKIIDCPRLD----GLPDELGNLKALEELTVEGTAMREVPES 859 (940)
Q Consensus 788 ~~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~ 859 (940)
.....++|++|+|++|.+.. .++..+..+++|++|+|++|.+.+ .++..+..+++|++|+|++|.++...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-- 227 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-- 227 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH--
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH--
Confidence 00123789999999997644 344445678899999999998764 23456677789999999999887533
Q ss_pred HHHhhhccCccccCCCCCCEEeccCCCCCcc
Q 002299 860 LGQLLESLPSSLYKSKCLQDSYLDDCPNLHR 890 (940)
Q Consensus 860 l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~ 890 (940)
...++..+...++|+.|+|++|++...
T Consensus 228 ----~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 228 ----ALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp ----HHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred ----HHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 122334445678899999999987653
No 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.8e-08 Score=108.80 Aligned_cols=186 Identities=19% Similarity=0.173 Sum_probs=113.1
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc-cc-eEEEecchhhhccCCHHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF-EG-SYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l~ 265 (940)
|.....++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+.... .. .+.+...... +...+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~- 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER----GINVI- 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH----HHHTT-
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC----chHHH-
Confidence 3345679999999999999987643 33489999999999999999999764322 11 2222211100 00000
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChhhh-hhC-C
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDKQVL-SNC-R 341 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~~~-~~~-~ 341 (940)
...+....... ....+++.++|+|+++.. +..+.+...+.....+.++|+||...... ... .
T Consensus 94 ~~~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 94 REKVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp HHHHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 01111100000 011256789999999764 33444544443345678888888765321 111 1
Q ss_pred CCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHh
Q 002299 342 VDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLG 396 (940)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 396 (940)
....+.+.+++.++..+++...+..... .-..+..+.+++.++|.|..+..+.
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2247899999999999999887643322 1224567889999999998655443
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=5.8e-09 Score=113.76 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=31.0
Q ss_pred CCceEEEcCC-CCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCc
Q 002299 793 QALSKLELNN-CSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVP 857 (940)
Q Consensus 793 ~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 857 (940)
++|+.|+|++ |.+....+..|..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|+|+.+|
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 4455555553 4333333344445555555555555544444444445555555555555544444
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=1.9e-07 Score=103.51 Aligned_cols=304 Identities=13% Similarity=0.095 Sum_probs=161.7
Q ss_pred eEEeChhhhccCCCcceEEEecCCCcccccCCCCCC---CCcceEEeCCCCCchhhhhhhccccccccccccccccccCC
Q 002299 547 EIHINPYTFSMMPELRFLKFYGQNKCMITHFEGAPF---TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVN 623 (940)
Q Consensus 547 ~~~~~~~~f~~~~~Lr~L~l~~~~~~~i~~l~~~~~---~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~ 623 (940)
...+...+|.++++|+.+.+.++ +..+....+ ..|+.+.+..+ ++.+. ...|.++..
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p~~-l~~i~---------------~~aF~~~~~ 141 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLPLM-LKSIG---------------VEAFKGCDF 141 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCCTT-CCEEC---------------TTTTTTCCC
T ss_pred ccCcchhHhhCCCCCcEEEeCCC----ceEccchhhcccccchhhcccCc-eeeec---------------ceeeecccc
Confidence 45688899999999999999754 234444444 44554443322 22220 111222222
Q ss_pred CceeeCCCCCCCCcCC--CcccCCCccEEeccCCCCCccccccccCCCcccEEEecCCCCCcccCCc-c-CCCCCCEEEe
Q 002299 624 LKEIDLSDSKQLTKLP--DLSLARNLESLDLWGCSSLMETHSSIQYLNKLAFLYLVSCESLRSLPHT-I-RSESLFELRL 699 (940)
Q Consensus 624 L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~-~l~~L~~L~l 699 (940)
+........ ..+. .|..+.+|+.+.+.++ ........+.++.+|+.+.+..+ ...++.. + .+..|+.+.+
T Consensus 142 ~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 142 KEITIPEGV---TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp SEEECCTTC---CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCC
T ss_pred cccccCccc---cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeec
Confidence 221111111 1111 2445555555555432 22222233444555555544432 1222211 1 2344444443
Q ss_pred cCCCCCCcCCCCCcCCccEEecCCCCCcccC-ccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCC
Q 002299 700 SGCTSLKRFPKISSCFLKDLDLESCGIEELP-SSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFP 778 (940)
Q Consensus 700 ~~~~~l~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 778 (940)
..+.....-......+|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ........+..+..|+.+...... ++
T Consensus 216 ~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~ 289 (394)
T 4fs7_A 216 PNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VP 289 (394)
T ss_dssp CTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----EC
T ss_pred CCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee----ec
Confidence 3321110001111124666655432 23333 23567778888888763 334444556777888877765431 11
Q ss_pred CCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCch
Q 002299 779 EIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPE 858 (940)
Q Consensus 779 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 858 (940)
. ..+.. +.+|+.+.+.++ ....-...|.++.+|+.++|.++ +...-..+|.++++|+.+.+..+ ++.++.
T Consensus 290 ~--~~F~~-----~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 290 E--KTFYG-----CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp T--TTTTT-----CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred c--ccccc-----cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence 1 11112 277888888764 33333456788899999998654 44334567889999999999776 655542
Q ss_pred hHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhh
Q 002299 859 SLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRL 904 (940)
Q Consensus 859 ~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 904 (940)
.+|.++++|+.++|..+ .+.+...|.++++|+.+
T Consensus 360 ----------~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 ----------NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ----------TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred ----------HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 45888999999999754 33445678888888754
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=1.2e-10 Score=127.31 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=109.9
Q ss_pred CCCCCEEEecCCCCCCc----CCCC---CcCCccEEecCCCCCcc--cCccccccCCCcEEEecCCCCCccccccc----
Q 002299 691 SESLFELRLSGCTSLKR----FPKI---SSCFLKDLDLESCGIEE--LPSSIECLYNLRSIDLLNCTRLEYIASSI---- 757 (940)
Q Consensus 691 l~~L~~L~l~~~~~l~~----~~~~---~~~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~l---- 757 (940)
+++|+.|++++|..-.. +... ...+|++|+|++|.++. +......+++|+.|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999874321 1111 11369999999999873 22223457789999999998765433333
Q ss_pred -CCCCCCcEEEecCCCCCCc-CCCCCcchhccccccCCCceEEEcCCCCCCc----cccCccCCCCCccEEeeeCCCCCC
Q 002299 758 -FTLKSLESIRISKCSNLRK-FPEIPSCIIDEAGIKRQALSKLELNNCSRLE----SFPSSLCMFESLASLKIIDCPRLD 831 (940)
Q Consensus 758 -~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~ 831 (940)
...++|++|+|++|..... ...++..+.. .++|++|+|++|.+.. .++..+...++|+.|+|++|.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-----~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-----NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-----CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhc-----CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3468899999999864210 0011112222 3889999999998754 234556677899999999999875
Q ss_pred ----CCCccCCCCCCCCEEEccCCCCccC
Q 002299 832 ----GLPDELGNLKALEELTVEGTAMREV 856 (940)
Q Consensus 832 ----~~~~~l~~l~~L~~L~L~~n~l~~l 856 (940)
.++..+..+++|++|+|++|.|+..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 2344556678999999999998743
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.77 E-value=2.8e-07 Score=99.16 Aligned_cols=259 Identities=15% Similarity=0.126 Sum_probs=145.2
Q ss_pred CCCCCccchhhhHHHHHHHhhcC---CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTG---SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
.....++|++..++.+..++... ......+.|+|++|+|||++|+++++.....| +++.+. .......+
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~~~----~~~~~~~l- 80 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTSGP----AIEKPGDL- 80 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEECTT----TCCSHHHH-
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEecc----ccCChHHH-
Confidence 34578999999999888877531 12335688999999999999999998764332 233221 11111111
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--HHHHHHcccCCC------------------CCCc
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWF------------------ASGS 325 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~------------------~~gs 325 (940)
...+... ..++.+|++|+++... ..+.+...+... .++.
T Consensus 81 --------------------~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 81 --------------------AAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp --------------------HHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred --------------------HHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 1111111 1245699999997743 222222111100 1245
Q ss_pred EEEEEeCChhhh-hhC--CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhhcC-
Q 002299 326 RIIITTRDKQVL-SNC--RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFLSG- 401 (940)
Q Consensus 326 ~iiiTtR~~~~~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~- 401 (940)
++|.||...... ..+ .....+.+++++.+|..+++.+.+...... -..+....++++++|.|..+..+...+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 666666643221 111 223589999999999999998876433221 22456788999999999887766544321
Q ss_pred -----C---CHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhhcccCC--CCHHHHHHHHHHCCCCc---h
Q 002299 402 -----R---RKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIACFLVG--EDRDQVIRFLDSCGFFP---E 468 (940)
Q Consensus 402 -----~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la~f~~~--~~~~~l~~~~~~~~~~~---~ 468 (940)
. +.+....++.. +...+..++..++..+..+.....+ .....+...+ |... .
T Consensus 218 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~tl~ 282 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGTLE 282 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHHH
Confidence 1 23333333322 2233456777777777665544322 3344444432 3221 1
Q ss_pred hchH-HHHhccceEEeCCeeeehHHH
Q 002299 469 IGLR-VLVDKSLITIDYNTIKMHDLL 493 (940)
Q Consensus 469 ~~l~-~L~~~sll~~~~~~~~mH~lv 493 (940)
..+. .+++.+++........+-+..
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~~ 308 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTELA 308 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHHH
T ss_pred HHHhHHHHHhcchhcCCccceecHHH
Confidence 1122 367788887765444444443
No 172
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.72 E-value=9.3e-07 Score=97.89 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=54.4
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
++|+.+.+... ....-...|.++.+|+.+.|..+ +...-...|.++.+|+.+.|..+ ++.++. ..|.
T Consensus 288 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~----------~aF~ 354 (394)
T 4gt6_A 288 PALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE----------SAFS 354 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG----------GGGT
T ss_pred cccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH----------hHhh
Confidence 56677666532 33333345667777777777653 33333456777777777777543 444442 3466
Q ss_pred CCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCC
Q 002299 873 KSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n 909 (940)
++++|+.+++.++... -..+..+..|+.+.+..|
T Consensus 355 ~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred CCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 7777777777765322 134555666776666654
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.67 E-value=1.7e-07 Score=100.69 Aligned_cols=184 Identities=12% Similarity=0.093 Sum_probs=112.6
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh-ccccc-eEEEecchhhhccCCHHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS-KHFEG-SYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~-~~~~~~~~~~~~~~~~~~l~ 265 (940)
|.....++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+. ..+.. .+.+.... ......+....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-ERGIDVVRHKI 89 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS-TTCTTTSSHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc-ccChHHHHHHH
Confidence 3445679999999999998886543 23388999999999999999998763 22221 22222211 00000111111
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhhh-cCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChh-hhhh-C
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKRF-SCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDKQ-VLSN-C 340 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~-~ 340 (940)
..+.. ...+ .+++.++|+|+++.. +..+.+...+.....+.++|+||.... +... .
T Consensus 90 ~~~~~-------------------~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 90 KEFAR-------------------TAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp HHHHH-------------------SCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred HHHHh-------------------cCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 11100 0001 246789999999764 335556665555556778888876543 1111 1
Q ss_pred CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 341 RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
.....+.+.+++.++..+++...+...... -..+....+++.++|.+..+...
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 223589999999999999998776433221 22456778889999998765443
No 174
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.66 E-value=1.8e-07 Score=103.00 Aligned_cols=195 Identities=15% Similarity=0.064 Sum_probs=112.1
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLL 269 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 269 (940)
....++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ...+ ..... ...+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~~-------~~~~~-~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPC-------GVCDN-CREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSCC-------SSSHH-HHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCCC-------cccHH-HHHHh
Confidence 34579999999999999887543 235688999999999999999998764322110 0000 00000 00110
Q ss_pred HH-------hhCCC-CCCCchhhhHHHHHhh-hcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChhh-h
Q 002299 270 ST-------LLDDR-NVKNFPYIILNFQSKR-FSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDKQV-L 337 (940)
Q Consensus 270 ~~-------~~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~~-~ 337 (940)
.. +.... ..........+.+... ..+++.++|+||++.. ...+.+...+.....+..+|++|....- .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 00000 0111111111111111 1346789999999753 3355554444433456677777764432 1
Q ss_pred hh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHh
Q 002299 338 SN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLG 396 (940)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 396 (940)
.. ......+++.+++.++..+++.+.+..... ....+....+++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11 123368999999999999999876532111 1123557789999999998876554
No 175
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.62 E-value=4e-06 Score=92.79 Aligned_cols=104 Identities=7% Similarity=0.083 Sum_probs=76.6
Q ss_pred CCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCcccc
Q 002299 793 QALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLY 872 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~ 872 (940)
..|+.+.+.++ ....-...+..+++|+.+.+.. .+...-...|.++.+|+.+.|..+ ++.++. .+|.
T Consensus 265 ~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~----------~aF~ 331 (394)
T 4gt6_A 265 AYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD----------DAFA 331 (394)
T ss_dssp SSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT----------TTTT
T ss_pred ccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH----------hHhh
Confidence 67888887654 3334455678899999999864 344444567889999999999765 544442 4588
Q ss_pred CCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCCc
Q 002299 873 KSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGKC 910 (940)
Q Consensus 873 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 910 (940)
++++|+.+.|..+ +...-..+|.+|++|+.+++.++.
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 9999999999754 444335589999999999999873
No 176
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.60 E-value=5.7e-07 Score=94.24 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=96.5
Q ss_pred CccchhhhHHHHHHHhhcC--CCCeeEEEEEecCCchhhHHHHHHHHHhhcccc-------ceEEEecchhhhccCCHHH
Q 002299 193 DLVGVECRIKEIELLLRTG--SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE-------GSYFAHNVREAQETGGLAH 263 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~ 263 (940)
.+.||+++++++...|... .+....+.|+|++|+|||++|+.+++.+..... ..+++.+. .......
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----ELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----CCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----ccCCHHH
Confidence 4889999999998777542 345567899999999999999999997754221 23445442 2233445
Q ss_pred HHHHHHHHhhCCCCCCCchhhhHHHHHhh---hcCCceEEEEeCCCChH---HHHHHHcccCCCCCCcE--EEEEeCChh
Q 002299 264 LRQQLLSTLLDDRNVKNFPYIILNFQSKR---FSCKKVLIVFDDVTHLK---QIEFLIGRLDWFASGSR--IIITTRDKQ 335 (940)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~---l~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~--iiiTtR~~~ 335 (940)
+...++.++.+............+.+.+. -.++++++|||+++... .+-.+..... ...++ ||.++-..+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEecCcc
Confidence 66667776654432111112222222222 24567999999997742 2322221100 12332 333343321
Q ss_pred h----h-----hhCCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 336 V----L-----SNCRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 336 ~----~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
. . ..++ ...+.+++++.+|-.+++.+++
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1 1 1121 2578999999999999998775
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.58 E-value=2.2e-07 Score=91.47 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=41.7
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
....++||+.+++++.+.+... ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999988653 3456789999999999999999987643
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=1.5e-06 Score=99.47 Aligned_cols=190 Identities=14% Similarity=0.174 Sum_probs=105.6
Q ss_pred CCCCCccchhhhHHHHHHHhhcCC---------------CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecch
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGS---------------AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVR 253 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~---------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 253 (940)
.....++|++..++++..++.... ...+.+.|+|++|+||||+|+.+++... +. .+.+.+
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in~-- 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQNA-- 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEECT--
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEeC--
Confidence 345679999999999999986410 1346899999999999999999999772 22 222322
Q ss_pred hhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh--------HHHHHHHcccCCCCCCc
Q 002299 254 EAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL--------KQIEFLIGRLDWFASGS 325 (940)
Q Consensus 254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~~~~l~~~l~~~~~gs 325 (940)
+.... ..+....+.................. .....+++.+||+|+++.. ..+..+... .+.
T Consensus 111 --s~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~~~ 180 (516)
T 1sxj_A 111 --SDVRS-KTLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----TST 180 (516)
T ss_dssp --TSCCC-HHHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----CSS
T ss_pred --CCcch-HHHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----cCC
Confidence 11111 12222222222111100000000000 0012356789999999653 223333322 234
Q ss_pred EEEEEeCChh---hhhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh-hhHHHH
Q 002299 326 RIIITTRDKQ---VLSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP-LALKVL 395 (940)
Q Consensus 326 ~iiiTtR~~~---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 395 (940)
.||+++.... +.........+.+++++.++..+.+...+....... ..+....|++.++|.+ -++..+
T Consensus 181 ~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 181 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 4655554432 222223346799999999999998877664322111 1244678889999954 444444
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=2e-08 Score=108.69 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=84.4
Q ss_pred ccccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCC------
Q 002299 731 SSIECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCS------ 804 (940)
Q Consensus 731 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~------ 804 (940)
..+..+|+|+.|+|++|... .++. +. +++|++|+|..|... ...+..+....+++|++|+|+.+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~------~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP------DSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC------HHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC------hHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 33455566666666655222 1222 22 566666666654321 111111111123666666664211
Q ss_pred -CCccccCcc--CCCCCccEEeeeCCCCCCCCCccC---CCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCC
Q 002299 805 -RLESFPSSL--CMFESLASLKIIDCPRLDGLPDEL---GNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQ 878 (940)
Q Consensus 805 -~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~ 878 (940)
....+...+ ..+|+|+.|++++|.+.+..+..+ ..+++|++|+|+.|.+...- ...++..+.++++|+
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G------~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG------ARLLLDHVDKIKHLK 310 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH------HHHHHTTHHHHTTCS
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH------HHHHHhhcccCCcce
Confidence 011111112 357899999999988764222111 35789999999999876421 112233344678899
Q ss_pred EEeccCCCCCcccCCCcCCchh-h-hhhhccCCc
Q 002299 879 DSYLDDCPNLHRLPDELGSLEA-L-KRLYAEGKC 910 (940)
Q Consensus 879 ~L~L~~n~~~~~~p~~~~~l~~-L-~~L~l~~n~ 910 (940)
.|+|++|.+....-. .+.. | ..++++++.
T Consensus 311 ~L~L~~n~i~d~~~~---~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 311 FINMKYNYLSDEMKK---ELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp EEECCSBBCCHHHHH---HHHHHCCSEEECCSBC
T ss_pred EEECCCCcCCHHHHH---HHHHHcCCEEEecCCc
Confidence 999999976543222 2222 2 346677665
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=2.8e-08 Score=107.52 Aligned_cols=165 Identities=13% Similarity=0.055 Sum_probs=108.5
Q ss_pred cCccccccCCCcEEEecCCCC---------CcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEE
Q 002299 729 LPSSIECLYNLRSIDLLNCTR---------LEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLE 799 (940)
Q Consensus 729 lp~~~~~l~~L~~L~l~~~~~---------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 799 (940)
+..++..+++|+.|.+.+... ...+...+..+|+|+.|+|++|.... ++. + ..++|++|+
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~----~------~~~~L~~L~ 199 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK----K------PRPNLKSLE 199 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS----C------BCTTCSEEE
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc----c------cCCCCcEEE
Confidence 344466788999999865422 11244455678999999999874331 221 1 128999999
Q ss_pred cCCCCCCccccCcc--CCCCCccEEeeeCC--CCCC-----CCCccC--CCCCCCCEEEccCCCCccC-chhHHHhhhcc
Q 002299 800 LNNCSRLESFPSSL--CMFESLASLKIIDC--PRLD-----GLPDEL--GNLKALEELTVEGTAMREV-PESLGQLLESL 867 (940)
Q Consensus 800 L~~~~~~~~~~~~~--~~l~~L~~L~l~~~--~~~~-----~~~~~l--~~l~~L~~L~L~~n~l~~l-p~~l~~l~~~l 867 (940)
|..|.+.......+ ..+|+|+.|+|+.+ ...+ .+...+ ..+|+|+.|+|.+|.+..- +..+ ...
T Consensus 200 L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l----a~a 275 (362)
T 2ra8_A 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF----LES 275 (362)
T ss_dssp EECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH----HHC
T ss_pred EecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH----HhC
Confidence 99886544332223 36899999999742 1111 111223 3579999999999987631 1111 111
Q ss_pred CccccCCCCCCEEeccCCCCCcc----cCCCcCCchhhhhhhccCCccC
Q 002299 868 PSSLYKSKCLQDSYLDDCPNLHR----LPDELGSLEALKRLYAEGKCSD 912 (940)
Q Consensus 868 p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~ 912 (940)
..+++|++|+|+.|.+... ++..+.++++|+.|++++|++.
T Consensus 276 ----~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 276 ----DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp ----SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred ----ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2478999999999987652 4555678899999999999754
No 181
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.54 E-value=2.4e-06 Score=92.42 Aligned_cols=251 Identities=15% Similarity=0.138 Sum_probs=137.0
Q ss_pred CCCCCccchhhhHHHHHHHhhcC---CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTG---SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
.....++|++..++++..++... ......|.|+|++|+|||++|+.++++....| +.+.+. .......+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~~~----~~~~~~~~- 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTAAP----MIEKSGDL- 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEEGG----GCCSHHHH-
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEecch----hccchhHH-
Confidence 34568999999999998888642 23345688999999999999999998764443 222211 01111111
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--HHHHHHcccCCC------------------CCCc
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWF------------------ASGS 325 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~------------------~~gs 325 (940)
...+.. ..+..+|++|+++... ..+.+...+... .++.
T Consensus 98 --------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 --------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp --------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred --------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 111111 2356799999997542 222232221111 1234
Q ss_pred EEEEEeCChhhh-hh--CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHhhhh---
Q 002299 326 RIIITTRDKQVL-SN--CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLGSFL--- 399 (940)
Q Consensus 326 ~iiiTtR~~~~~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l--- 399 (940)
.+|.+|...... .. -.....+.+++++.++..+++.+.+.... .....+..+.+++.+.|.|-.+..+...+
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 566666543221 11 12346899999999999999987763322 12234567788889999986655443322
Q ss_pred ---cCC---CHHHHHHHHHHHhcCCCchHHHHHHhhhcCCChhhHHHHHhhhcccCC-CCHHHHHHHHHHCCCCchhchH
Q 002299 400 ---SGR---RKEEWKSAMRKLEIVPHMEIQEVLKISYDGLDGHEQDIFLDIACFLVG-EDRDQVIRFLDSCGFFPEIGLR 472 (940)
Q Consensus 400 ---~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~l~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~ 472 (940)
.+. +.+....++. .+..+...++..+++.+..++-...+ .....+...+.-..-.....++
T Consensus 234 a~~~~~~~i~~~~~~~~~~------------~~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALN------------SLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp HHHTTCSEECHHHHHHHHH------------HHTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred HHhhcCCccCHHHHHHHHH------------HhCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 111 2222222222 22334445666556666655544111 2344444433211111122344
Q ss_pred -HHHhccceEEe
Q 002299 473 -VLVDKSLITID 483 (940)
Q Consensus 473 -~L~~~sll~~~ 483 (940)
.|++.+++...
T Consensus 302 ~~l~~~gli~~~ 313 (338)
T 3pfi_A 302 PYLLANGYIERT 313 (338)
T ss_dssp HHHHHTTSEEEE
T ss_pred HHHHHcCceecC
Confidence 78888988776
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.54 E-value=3.7e-07 Score=96.23 Aligned_cols=181 Identities=19% Similarity=0.206 Sum_probs=102.8
Q ss_pred CCCCCccchhhhHHHHHHHhhcC-----------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhc
Q 002299 189 SDNKDLVGVECRIKEIELLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQE 257 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (940)
.....++|++..++++.+.+... ....+.+.|+|++|+|||++|+++++.....| +.+.. .....
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~~-~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVVG-SELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEEG-GGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeh-HHHHH
Confidence 34567999999999998776431 12345689999999999999999998764432 12221 11100
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh----------------HHHHHHHcccC--
Q 002299 258 TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL----------------KQIEFLIGRLD-- 319 (940)
Q Consensus 258 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~-- 319 (940)
.... .........+......++.+|++|+++.. ..+..+...+.
T Consensus 90 -~~~~-----------------~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 90 -KFIG-----------------EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp -CSTT-----------------HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred -hccc-----------------hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 0000 00011112222223346689999999653 11223332221
Q ss_pred CCCCCcEEEEEeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcC-ChhhHH
Q 002299 320 WFASGSRIIITTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKG-VPLALK 393 (940)
Q Consensus 320 ~~~~gs~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~ 393 (940)
....+..||.||....... .......+.++..+.++..+++...+.......+ .....+++.+.| .|-.+.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHH
Confidence 1234566777877553322 1123357899999999999999887643322111 114566666666 444444
Q ss_pred H
Q 002299 394 V 394 (940)
Q Consensus 394 ~ 394 (940)
.
T Consensus 229 ~ 229 (285)
T 3h4m_A 229 A 229 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.52 E-value=1.9e-07 Score=95.78 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=100.4
Q ss_pred CCCCccchh---hhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHH
Q 002299 190 DNKDLVGVE---CRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 190 ~~~~~vGr~---~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (940)
..+.|+|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++........+.|+.... .... +
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~-~~~~--~----- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI-HASI--S----- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG-GGGS--C-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH-HHHH--H-----
Confidence 346788743 4556666666532 3467889999999999999999997765544455655321 1100 0
Q ss_pred HHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH----HHHHHcccCCC-CCC-cEEEEEeCChhh----
Q 002299 267 QLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ----IEFLIGRLDWF-ASG-SRIIITTRDKQV---- 336 (940)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~l~~~l~~~-~~g-s~iiiTtR~~~~---- 336 (940)
.... +.+ .++.+||+||++.... .+.+...+... ..+ .++|+||+...-
T Consensus 96 ----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 011 2456999999865321 22222111100 122 258888774321
Q ss_pred -----hhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHh
Q 002299 337 -----LSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLG 396 (940)
Q Consensus 337 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 396 (940)
...+.....+.+++++.++..+++...+..... .-..+..+.+++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 111111268999999999999999887642221 1224567788889999887665443
No 184
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=3.9e-07 Score=99.16 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=27.7
Q ss_pred EEecCCC-CCcccCccccccCCCcEEEecC-CCCCcccccccCCCCCCcEEEecCC
Q 002299 718 DLDLESC-GIEELPSSIECLYNLRSIDLLN-CTRLEYIASSIFTLKSLESIRISKC 771 (940)
Q Consensus 718 ~L~L~~~-~i~~lp~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~ 771 (940)
.++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N 66 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC
Confidence 3455555 5555665 55556666666654 4444433344555555555555544
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.43 E-value=4.7e-06 Score=90.38 Aligned_cols=203 Identities=15% Similarity=0.105 Sum_probs=111.4
Q ss_pred hhHHHHHHHHhhhhccCcccCCCCCCccchhhhHHHHHHHhhc----------CCCCeeEEEEEecCCchhhHHHHHHHH
Q 002299 168 ESKLIEEIVGEVLKRLDDTFQSDNKDLVGVECRIKEIELLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 168 ~~~~~~~i~~~~~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
+...++.+...+..+. ++..-..++|.+..++++.+.+.. .....+.|.|+|++|+|||++|+++++
T Consensus 63 ~~~~~~~i~~~i~~~~---~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHG---PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBCCS---CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCC---CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3444555555554433 234456799999999999877642 112356789999999999999999998
Q ss_pred HhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh---------
Q 002299 238 KMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL--------- 308 (940)
Q Consensus 238 ~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------- 308 (940)
.....| +.+... ...... ... ........+......++.+|+||+++..
T Consensus 140 ~~~~~~---~~i~~~-~l~~~~-~g~-----------------~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 140 QSGATF---FSISAS-SLTSKW-VGE-----------------GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HTTCEE---EEEEGG-GGCCSS-TTH-----------------HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred HcCCeE---EEEehH-Hhhccc-cch-----------------HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 764322 223221 110000 000 0001111112222346789999998432
Q ss_pred ----HHHHHHHcccC----CCCCCcEEEEEeCChhhhh-h--CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHH
Q 002299 309 ----KQIEFLIGRLD----WFASGSRIIITTRDKQVLS-N--CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKL 377 (940)
Q Consensus 309 ----~~~~~l~~~l~----~~~~gs~iiiTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~ 377 (940)
.....++..+. ....+..||.||....... . -.....+.++..+.++..+++...+...... -..+.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~ 275 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEE 275 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHH
Confidence 11223322221 1123445565665432211 1 1334578899999999999988776332211 11345
Q ss_pred HHHHHHHhcC-ChhhHHHHhh
Q 002299 378 THEAVKYAKG-VPLALKVLGS 397 (940)
Q Consensus 378 ~~~i~~~~~g-~PLal~~~~~ 397 (940)
...+++.+.| .+-.|..++.
T Consensus 276 l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 276 IEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 6778888888 4555655543
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.40 E-value=1.3e-06 Score=97.35 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=102.6
Q ss_pred CCcc-chhhhH--HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccc--eEEEecchhhhccCCHHHHHH
Q 002299 192 KDLV-GVECRI--KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEG--SYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 192 ~~~v-Gr~~~~--~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~ 266 (940)
+.|| |..... ..+........ ....+.|+|++|+||||||+.+++.+...++. ++++... .+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~----------~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE----------KFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH----------HHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH----------HHHH
Confidence 4566 655443 33344433322 25568999999999999999999987665533 3444321 1122
Q ss_pred HHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----HHHHHHcccCC-CCCCcEEEEEeCChh------
Q 002299 267 QLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----QIEFLIGRLDW-FASGSRIIITTRDKQ------ 335 (940)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iiiTtR~~~------ 335 (940)
.+...+... ....+.+.+..++-+|++||++... ..+.+...+.. ...|..||+||....
T Consensus 174 ~~~~~~~~~---------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l 244 (440)
T 2z4s_A 174 DLVDSMKEG---------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_dssp HHHHHHHTT---------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC
T ss_pred HHHHHHHcc---------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH
Confidence 232222211 1122333344356799999995432 22223222111 135678888887632
Q ss_pred ---hhhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 336 ---VLSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 336 ---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
+...+.....+.+++++.++..+++.+.+...... -..+....|++.++|.+-.+..
T Consensus 245 ~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 245 QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHH
Confidence 11112223578899999999999998876321111 1124467788888888765543
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.39 E-value=3.3e-06 Score=90.31 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=103.7
Q ss_pred CCCCCccchhhhHHHHHHHhh----------cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhcc
Q 002299 189 SDNKDLVGVECRIKEIELLLR----------TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQET 258 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (940)
..-..++|.+..++.|..++. ......+-|.|+|++|+|||++|+++++.....| +.+.. ..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~~-~~---- 86 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVSS-SD---- 86 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEEH-HH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEch-HH----
Confidence 345679999999999987762 1112245689999999999999999999764433 22221 11
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH-------------HHHHHHccc---CCCC
Q 002299 259 GGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-------------QIEFLIGRL---DWFA 322 (940)
Q Consensus 259 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l---~~~~ 322 (940)
+.....+ .........+......++.+|++|+++... ....+...+ ....
T Consensus 87 ---------l~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 ---------LVSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ---------HHTTTGG-----GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ---------Hhhcccc-----hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 0000000 001111122222223467899999997431 123332222 2223
Q ss_pred CCcEEEEEeCChhhhhh---CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC-hhhHHHHh
Q 002299 323 SGSRIIITTRDKQVLSN---CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV-PLALKVLG 396 (940)
Q Consensus 323 ~gs~iiiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 396 (940)
.+..||.||........ -.....+.++..+.++..+++..++.+..... .......+++.+.|. +-.|..+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45566667765432211 02346788999999999999988774332211 123456777777763 44444443
No 188
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.38 E-value=3.5e-06 Score=87.39 Aligned_cols=182 Identities=15% Similarity=0.123 Sum_probs=98.3
Q ss_pred CCCccchhhhHHHHHHHhhc---C-------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 191 NKDLVGVECRIKEIELLLRT---G-------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
-.+++|.+..++++.+++.. . ....+-+.|+|++|+|||++|+++++.....| +.+... .......
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~~~-~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMAGA-EFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEETT-TTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEechH-HHHhhcc
Confidence 45789998888777665431 1 12345588999999999999999999764332 222221 1100000
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH-----------------HHHHHHcccCCC--
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-----------------QIEFLIGRLDWF-- 321 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~l~~~l~~~-- 321 (940)
..........+.......+.+|++|+++... .+..+...+...
T Consensus 81 ------------------~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 ------------------GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ------------------THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ------------------ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0001111222222333457899999997641 123333322211
Q ss_pred CCCcEEEEEeCChhhhh-hC----CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChh-hHHHH
Q 002299 322 ASGSRIIITTRDKQVLS-NC----RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPL-ALKVL 395 (940)
Q Consensus 322 ~~gs~iiiTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 395 (940)
..+..||.||....... .. .....+.++..+.++..+++...+..... ..........+++.+.|.+- .|..+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 23456666776543221 11 23467889999999999999877633222 11112234667777777643 44433
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.6e-06 Score=94.49 Aligned_cols=195 Identities=10% Similarity=0.084 Sum_probs=110.0
Q ss_pred CCCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc--cccce-EEEecchhhhccCCHHHH
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK--HFEGS-YFAHNVREAQETGGLAHL 264 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f~~~-~~~~~~~~~~~~~~~~~l 264 (940)
|.....++|++..++.+..++..+.. +.+.|+|++|+||||+|+.+++.+.. .+... ..+.. ....+...+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~----~~~~~~~~~ 106 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA----SDERGISIV 106 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS----SSCCCHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc----ccccchHHH
Confidence 33456799999999999999876432 23889999999999999999987542 12222 22221 111122222
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCChh-hhhhC-
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDKQ-VLSNC- 340 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~- 340 (940)
.+............ .... .....-..++-++++|+++... ..+.+...+.......++|++|.... +....
T Consensus 107 -~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 107 -REKVKNFARLTVSK-PSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp -TTHHHHHHHSCCCC-CCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHHhhhcccc-cchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 11111111110000 0000 0011112355699999986532 23334333332345667777775442 21111
Q ss_pred CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 341 RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
.....+.+.+++.++..+.+...+...... -.++..+.|++.++|.|..+..+
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 112478999999999999998876432221 22456788999999998865443
No 190
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.36 E-value=1.2e-05 Score=83.72 Aligned_cols=169 Identities=15% Similarity=0.078 Sum_probs=91.1
Q ss_pred CCccchhhhHHHHHH-------Hhhc-CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHH
Q 002299 192 KDLVGVECRIKEIEL-------LLRT-GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAH 263 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~-------~l~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 263 (940)
..++|....++++.. .+.. .....+.+.|+|++|+|||++|+++++.....| +.+...... .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cCCchHH
Confidence 457787776665544 3321 234567789999999999999999999753322 222221100 0000000
Q ss_pred HHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh------------HHHHHHHcccCC---CCCCcEEE
Q 002299 264 LRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL------------KQIEFLIGRLDW---FASGSRII 328 (940)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~l~~~l~~---~~~gs~ii 328 (940)
. .......+......++.+|++|+++.. ..++.+...+.. ......||
T Consensus 109 ~-----------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 109 K-----------------CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp H-----------------HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred H-----------------HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0 011112222233356789999998643 123333332221 22334567
Q ss_pred EEeCChhhhhh---C-CCCcEEEcCCCCH-HHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC
Q 002299 329 ITTRDKQVLSN---C-RVDQIYDVKELVD-VDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 329 iTtR~~~~~~~---~-~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 388 (940)
.||........ . .....+.+++++. ++..+++.+.. .. ..+....+++.+.|.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~----~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF----KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS----CHHHHHHHHHHHTTS
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC----CHHHHHHHHHHhcCC
Confidence 77777654332 1 2246789999988 66666655421 11 134567788888773
No 191
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.36 E-value=0.00012 Score=80.30 Aligned_cols=144 Identities=12% Similarity=0.055 Sum_probs=74.3
Q ss_pred ccccCCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCc
Q 002299 733 IECLYNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSS 812 (940)
Q Consensus 733 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 812 (940)
+....+|+.+.+.. .........+.++..|+.+.+..+ ++.++. ..+.. +.+|+.+.+..+ ....-...
T Consensus 213 f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~--~aF~~-----~~~l~~i~l~~~-i~~i~~~a 281 (379)
T 4h09_A 213 FSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN--VTSIGS--FLLQN-----CTALKTLNFYAK-VKTVPYLL 281 (379)
T ss_dssp TTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT--CCEECT--TTTTT-----CTTCCEEEECCC-CSEECTTT
T ss_pred cccccccceeeecc-ceeEEccccccCCccceEEEcCCC--ccEeCc--cccce-----eehhcccccccc-ceeccccc
Confidence 44556666666654 233333344556666776666542 222211 11111 155666666543 22223345
Q ss_pred cCCCCCccEEeeeCCCCCCCCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC
Q 002299 813 LCMFESLASLKIIDCPRLDGLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
+..+++|+.+.+.++.+...-...|.++.+|+.+.|..+ ++.++. .+|.++++|+.+.+..+ +...-.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~----------~aF~~C~~L~~i~ip~~-v~~I~~ 349 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV----------YAFKNCKALSTISYPKS-ITLIES 349 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT----------TTTTTCTTCCCCCCCTT-CCEECT
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH----------HHhhCCCCCCEEEECCc-cCEEch
Confidence 666777777777666555444456677777777777543 443331 34666777777766543 222223
Q ss_pred CCcCCch
Q 002299 893 DELGSLE 899 (940)
Q Consensus 893 ~~~~~l~ 899 (940)
.+|.+++
T Consensus 350 ~aF~~c~ 356 (379)
T 4h09_A 350 GAFEGSS 356 (379)
T ss_dssp TTTTTSS
T ss_pred hHhhCCC
Confidence 3455543
No 192
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.34 E-value=9.5e-06 Score=88.86 Aligned_cols=201 Identities=14% Similarity=0.052 Sum_probs=105.0
Q ss_pred CCCccchhhhHHHH---HHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHH
Q 002299 191 NKDLVGVECRIKEI---ELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 191 ~~~~vGr~~~~~~l---~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
.+.|||++..++.+ .+.+..+....+.+.|+|++|+|||++|+.+++......+.. .+.+..-............+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcccchhHHHHH
Confidence 46899999887764 444444433335789999999999999999999876433221 12221111111222222222
Q ss_pred HHHHhhCCC-----------------------------C-CCCchhhhHHHHHhhh-----cCC----ceEEEEeCCCCh
Q 002299 268 LLSTLLDDR-----------------------------N-VKNFPYIILNFQSKRF-----SCK----KVLIVFDDVTHL 308 (940)
Q Consensus 268 l~~~~~~~~-----------------------------~-~~~~~~~~~~~l~~~l-----~~~----~~LlVlDdv~~~ 308 (940)
.+....+.. . ...........+.+.. .++ +.+|++|+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 222211000 0 0000111222221111 122 459999999764
Q ss_pred H--HHHHHHcccCCCCCCcEEEEEeCC-h------------hhhhh-CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 002299 309 K--QIEFLIGRLDWFASGSRIIITTRD-K------------QVLSN-CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTA 372 (940)
Q Consensus 309 ~--~~~~l~~~l~~~~~gs~iiiTtR~-~------------~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 372 (940)
. ..+.+...+...... .++++|.. . .+... ......+.+++++.++..+++...+..... .
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~--~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV--E 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--C
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--C
Confidence 3 344444444332222 34444431 1 01010 112245799999999999999877643222 1
Q ss_pred hhhHHHHHHHHHhc-CChhhHHHH
Q 002299 373 SYTKLTHEAVKYAK-GVPLALKVL 395 (940)
Q Consensus 373 ~~~~~~~~i~~~~~-g~PLal~~~ 395 (940)
-..+....+++.+. |.|-.+..+
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 22456778888888 887665543
No 193
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=2.4e-06 Score=93.07 Aligned_cols=198 Identities=11% Similarity=0.065 Sum_probs=105.2
Q ss_pred CCCCCCccchhhhHHHHHHHh-hcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchh------------
Q 002299 188 QSDNKDLVGVECRIKEIELLL-RTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVRE------------ 254 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l-~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~------------ 254 (940)
|.....++|.+..++.+.+++ ..+. ... +.|+|+.|+||||+|+.++..+...-.+.+++.....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 344567999999999998888 4432 233 8999999999999999999865322222221110000
Q ss_pred ----------hhc-cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH--HHHHHcccCCC
Q 002299 255 ----------AQE-TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWF 321 (940)
Q Consensus 255 ----------~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~ 321 (940)
... ........++.+..+....... ... .+ ..+.+++-++|+|+++..+. .+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 000 0000001111111111100000 000 00 00133566999999976432 33333333222
Q ss_pred CCCcEEEEEeCChh-hhhhC-CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchh-hHHHHHHHHHhcCChhhHHHH
Q 002299 322 ASGSRIIITTRDKQ-VLSNC-RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASY-TKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 322 ~~gs~iiiTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~-~~~~~~i~~~~~g~PLal~~~ 395 (940)
..+..+|++|.... +.... .....+++++++.++..+.+.+.+..... .-. .+....|++.++|.+..+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 45677888776542 22211 22368999999999999999877632211 111 355778889999988765443
No 194
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.29 E-value=1.6e-05 Score=84.81 Aligned_cols=183 Identities=13% Similarity=0.096 Sum_probs=100.8
Q ss_pred CCCCccchhhhHHHHHHHhhc----------CCCCeeEEEEEecCCchhhHHHHHHHHHh-hccccceEEEecchhhhcc
Q 002299 190 DNKDLVGVECRIKEIELLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKM-SKHFEGSYFAHNVREAQET 258 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~~~~ 258 (940)
.-.+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.. ...| +.+... ...
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~-~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSS-DLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECC-SSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhH-HHH--
Confidence 345788988888888765531 11234678999999999999999999976 2222 122211 000
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH-------------HHHHHHcccCC---CC
Q 002299 259 GGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-------------QIEFLIGRLDW---FA 322 (940)
Q Consensus 259 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~---~~ 322 (940)
... ...........+...-..++.+|++|+++... ....++..+.. ..
T Consensus 84 ---------------~~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 84 ---------------SKW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp ---------------CSS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred ---------------hhh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 000 00111111222222223567899999997541 12333322221 23
Q ss_pred CCcEEEEEeCChhhhh-h--CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC-hhhHHHHh
Q 002299 323 SGSRIIITTRDKQVLS-N--CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV-PLALKVLG 396 (940)
Q Consensus 323 ~gs~iiiTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 396 (940)
.+..||.||....... . -.....+.++..+.++..+++..++....... .......|++.+.|. +-.|..+.
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4445565665432211 1 13446788999999999999988763322111 134466788888776 43455443
No 195
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.29 E-value=6.2e-05 Score=82.65 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=89.8
Q ss_pred ccCCCCCCcEEEecCCCCCCcCCCCCcchhccccccCCCceEEEcCCCCCCccccCccCCCCCccEEeeeCCCCCCCCCc
Q 002299 756 SIFTLKSLESIRISKCSNLRKFPEIPSCIIDEAGIKRQALSKLELNNCSRLESFPSSLCMFESLASLKIIDCPRLDGLPD 835 (940)
Q Consensus 756 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 835 (940)
.+..+.+|+.+.+..+ +..++. ..+. .+..|+.+.+..+ ....-...+..+.+|+.+.+..+ +...-..
T Consensus 212 ~f~~~~~l~~i~~~~~--~~~i~~--~~f~-----~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~ 280 (379)
T 4h09_A 212 GFSYGKNLKKITITSG--VTTLGD--GAFY-----GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL 280 (379)
T ss_dssp TTTTCSSCSEEECCTT--CCEECT--TTTT-----TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT
T ss_pred ccccccccceeeeccc--eeEEcc--cccc-----CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc
Confidence 4455666777766542 211111 1111 2278888888765 33344456778899999998654 3333345
Q ss_pred cCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccCCCcCCchhhhhhhccCC
Q 002299 836 ELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 836 ~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n 909 (940)
.|.++++|+.+.+.++.++.++. ..|.++++|+.+.|..+ +...-..+|.+|++|+.+.+..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~----------~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEP----------RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECT----------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccceehh----------hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 68899999999999988877763 46889999999999754 33333458999999999988654
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.26 E-value=1.3e-05 Score=85.99 Aligned_cols=177 Identities=13% Similarity=0.105 Sum_probs=95.8
Q ss_pred CCCcc-chhhh--HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHH
Q 002299 191 NKDLV-GVECR--IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQ 267 (940)
Q Consensus 191 ~~~~v-Gr~~~--~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (940)
.++|| |.... ...+..+..........+.|+|++|+||||||+.+++.....-...+++... .+...
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~----------~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD----------DFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH----------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH----------HHHHH
Confidence 34565 54433 3344555544322345688999999999999999999775432233444421 11122
Q ss_pred HHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----HHHHHHcccCC-CCCCcEEEEEeCChhh------
Q 002299 268 LLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----QIEFLIGRLDW-FASGSRIIITTRDKQV------ 336 (940)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iiiTtR~~~~------ 336 (940)
+...+... ....+.+... ++.+|++|+++... ..+.+...+.. ...|..||+||.....
T Consensus 80 ~~~~~~~~---------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKG---------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHT---------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcC---------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 22221110 1111222222 36699999996533 12222221110 1345678888764311
Q ss_pred ---hhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhh
Q 002299 337 ---LSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLA 391 (940)
Q Consensus 337 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (940)
...+.....+++++ +.++..+++...+...... -.++....+++++ |.+-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHH
Confidence 11112235789999 9999999998876432221 1245567788888 76643
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.25 E-value=3.2e-05 Score=83.64 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=101.2
Q ss_pred CCCCccchhhhHHHHHHHhhc----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 190 DNKDLVGVECRIKEIELLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
.-..++|.+..++.|...+.. .....+-|.|+|++|+|||+||+++++.....| +.+.. ..
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~~-~~----- 119 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVSS-SD----- 119 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEEH-HH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEeeH-HH-----
Confidence 346799999999988876631 112234588999999999999999999774332 12221 11
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH-------------HHHHHHccc---CCCCC
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-------------QIEFLIGRL---DWFAS 323 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l---~~~~~ 323 (940)
+.....+ .........+......++.+|+||+++... ....++..+ .....
T Consensus 120 --------l~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 120 --------LVSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp --------HHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred --------Hhhhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1100000 011111122222223477899999997532 122332222 11234
Q ss_pred CcEEEEEeCChhhhh-h--CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcC-ChhhHHHHh
Q 002299 324 GSRIIITTRDKQVLS-N--CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKG-VPLALKVLG 396 (940)
Q Consensus 324 gs~iiiTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~~ 396 (940)
+..||.||....... . -.....+.++..+.++..+++..++....... .......|++.+.| .+-.|..++
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555666665442211 0 13456788999999999999988764322111 13345678888887 444454443
No 198
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.24 E-value=1.7e-05 Score=88.19 Aligned_cols=177 Identities=16% Similarity=0.250 Sum_probs=103.8
Q ss_pred CCCCCccchhhhH---HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHH
Q 002299 189 SDNKDLVGVECRI---KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLR 265 (940)
Q Consensus 189 ~~~~~~vGr~~~~---~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 265 (940)
.....+||.+..+ ..+...+..+ ..+.+.|+|++|+||||+|+.+++.....|.. +... ..+...+.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~a~-----~~~~~~ir 92 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---ISAV-----TSGVKEIR 92 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EETT-----TCCHHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EEec-----cCCHHHHH
Confidence 4456899999888 6777777654 34678999999999999999999977544321 1111 12222221
Q ss_pred HHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH--HHHHHcccCCCCCCcEEEE-EeCChh--hhh-h
Q 002299 266 QQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ--IEFLIGRLDWFASGSRIII-TTRDKQ--VLS-N 339 (940)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iii-TtR~~~--~~~-~ 339 (940)
.++.. .......+++.+|++|+++.... .+.++..+.. ....+|. ||.+.. +.. .
T Consensus 93 -~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 -EAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp -HHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred -HHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 11111 01111245678999999976542 3333333321 2234444 444432 111 1
Q ss_pred CCCCcEEEcCCCCHHHHHHHHHHhhcCCC-----CCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 340 CRVDQIYDVKELVDVDALKLFSRCAFGED-----DPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 340 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
.....++.+++++.++..+++.+.+-... ....-..+..+.+++.++|.+-.+..
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 12335889999999999999988764311 11122345677888899998875543
No 199
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.23 E-value=1.3e-05 Score=85.47 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=87.3
Q ss_pred CccchhhhHHHHHHHhhcC-------------CCCeeEEEEEecCCchhhHHHHHHHHHhhcccc----ceEEEecchhh
Q 002299 193 DLVGVECRIKEIELLLRTG-------------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFE----GSYFAHNVREA 255 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~-------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~----~~~~~~~~~~~ 255 (940)
.++|.+..++.+.+++... ......+.|+|++|+|||++|+.+++.+..... ..+.+.. ...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR-DDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG-GGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH-HHh
Confidence 5788888888777655321 233456899999999999999999987644221 2222221 110
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCC-----------ChHHHHHHHcccCCCCCC
Q 002299 256 QETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVT-----------HLKQIEFLIGRLDWFASG 324 (940)
Q Consensus 256 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-----------~~~~~~~l~~~l~~~~~g 324 (940)
.... ...........+... +..+|++|+++ .......+...+.....+
T Consensus 111 -----------------~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 111 -----------------VGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp -----------------CCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred -----------------hhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 0000 000011111222222 34599999997 333345554444434556
Q ss_pred cEEEEEeCChhhhh------hC--CCCcEEEcCCCCHHHHHHHHHHhhc
Q 002299 325 SRIIITTRDKQVLS------NC--RVDQIYDVKELVDVDALKLFSRCAF 365 (940)
Q Consensus 325 s~iiiTtR~~~~~~------~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 365 (940)
..||.||....... .+ .....+.+++++.++..+++...+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 78888886432110 00 1236789999999999999987763
No 200
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.21 E-value=1.7e-05 Score=87.25 Aligned_cols=185 Identities=15% Similarity=0.113 Sum_probs=100.3
Q ss_pred CCCCCCccchhhhHHHHHHHhhc----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhc
Q 002299 188 QSDNKDLVGVECRIKEIELLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQE 257 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (940)
+..-..++|.+..++.+..++.. .....+-|.|+|++|+|||++|++++++....| +.+.+ ....
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~~-~~l~- 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNISA-ASLT- 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEECS-CCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEeeH-HHhh-
Confidence 34456899999999999887732 011245689999999999999999998754332 22221 1000
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh-----------H--HHHHHHccc---CC-
Q 002299 258 TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL-----------K--QIEFLIGRL---DW- 320 (940)
Q Consensus 258 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~--~~~~l~~~l---~~- 320 (940)
... .+ .........+.......+.+|+||+++.. . ....+...+ ..
T Consensus 186 ----~~~--------~g-----~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 186 ----SKY--------VG-----EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp -----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred ----ccc--------cc-----hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 000 00 00011111122222335679999999654 1 112222111 11
Q ss_pred CCCCcEEEEEeCChhhhh-h--CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChh-hHHHHh
Q 002299 321 FASGSRIIITTRDKQVLS-N--CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPL-ALKVLG 396 (940)
Q Consensus 321 ~~~gs~iiiTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 396 (940)
......||.||....... . -.....+.++..+.++..+++...+-..... ...+....+++.+.|..- +|..+.
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 123345565665432211 1 1333578899999999999998776332221 123456778888887544 554443
No 201
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.21 E-value=1.8e-05 Score=83.59 Aligned_cols=185 Identities=18% Similarity=0.149 Sum_probs=100.7
Q ss_pred CCCCCCccchhhhHHHHHHHhhcC----------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhc
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTG----------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQE 257 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (940)
+..-..++|.+..++.+.+++... ....+.+.|+|++|+|||++|+.++......| +.+... ....
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~~~-~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNISAA-SLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEEST-TTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEeeHH-HHhh
Confidence 344568999999999998776321 12245789999999999999999998764332 222211 1000
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh-------------HHHHHHHc---ccCCC
Q 002299 258 TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL-------------KQIEFLIG---RLDWF 321 (940)
Q Consensus 258 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~---~l~~~ 321 (940)
.. ...........+......++.+|++|+++.. .....++. .....
T Consensus 93 -----------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 93 -----------------KY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp -----------------SS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred -----------------cc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 00 0000111111122222346789999998543 11112221 11111
Q ss_pred --CCCcEEEEEeCChhhhhh-C--CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChh-hHHHH
Q 002299 322 --ASGSRIIITTRDKQVLSN-C--RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPL-ALKVL 395 (940)
Q Consensus 322 --~~gs~iiiTtR~~~~~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 395 (940)
+.+..||.||........ . .....+.++..+.++..+++...+...... -..+....+++.+.|.+- ++..+
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 234556667765432111 0 233577888888888888887765322211 113456778888888775 55444
Q ss_pred h
Q 002299 396 G 396 (940)
Q Consensus 396 ~ 396 (940)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.20 E-value=1e-05 Score=78.85 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=41.6
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
....++||+.+++.+.+.+... ..+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999988653 3456789999999999999999987644
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.17 E-value=2.2e-05 Score=84.21 Aligned_cols=177 Identities=16% Similarity=0.130 Sum_probs=102.1
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
...++++|.+..++.+.+++..+. ...++.+.|++|+|||++|+.+++.+... .+.+... ..+...+ +..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~~~-----~~~~~~i-~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVNGS-----DCKIDFV-RGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEETT-----TCCHHHH-HTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEccc-----ccCHHHH-HHH
Confidence 445789999999999999997543 34577888999999999999999876422 2333321 1122222 111
Q ss_pred HHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH---HHHHHHcccCCCCCCcEEEEEeCChhhhh-hC-CCC
Q 002299 269 LSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK---QIEFLIGRLDWFASGSRIIITTRDKQVLS-NC-RVD 343 (940)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iiiTtR~~~~~~-~~-~~~ 343 (940)
+....... ...+++-++|+|+++... ..+.+...+.....+.++|+||....-.. .. ...
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 11111100 112367799999998765 33333333222235678888887643211 00 112
Q ss_pred cEEEcCCCCHHHHHHHH-------HHhhcCCCCCCchhh-HHHHHHHHHhcCChhhH
Q 002299 344 QIYDVKELVDVDALKLF-------SRCAFGEDDPTASYT-KLTHEAVKYAKGVPLAL 392 (940)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf-------~~~~~~~~~~~~~~~-~~~~~i~~~~~g~PLal 392 (940)
..+++++++.++..+++ .+.+..... .-.. +....+++.++|.+..+
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI--AIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTCSCTTHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCCCCHHHH
Confidence 57899999988854332 222211111 1112 56777888888877643
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.16 E-value=2.7e-05 Score=86.93 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=103.1
Q ss_pred CCCCCccchhhhHHHHHHHhhc----------CCCCeeEEEEEecCCchhhHHHHHHHHHh-hccccceEEEecchhhhc
Q 002299 189 SDNKDLVGVECRIKEIELLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKM-SKHFEGSYFAHNVREAQE 257 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~~~ 257 (940)
..-..++|.+..++.|...+.. .....+-|.|+|++|+|||+||+++++.. ...| +.+.. .
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~---~~v~~-~---- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISS-S---- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE---EEECC-C----
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE---EEEeH-H----
Confidence 3456799999998888876621 11234678999999999999999999976 2211 11211 0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh-------------HHHHHHHcccCCC---
Q 002299 258 TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL-------------KQIEFLIGRLDWF--- 321 (940)
Q Consensus 258 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~--- 321 (940)
. +... ..+.. ... ....+...-..++.+|+||+++.. .....++..+...
T Consensus 203 --~---l~~~----~~g~~--~~~---~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 203 --D---LVSK----WLGES--EKL---VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp ------------------C--CCT---HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred --H---HHhh----hcchH--HHH---HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 0 1111 11110 111 112222222346789999999754 1234455544332
Q ss_pred CCCcEEEEEeCChhhhhh---CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC-hhhHHHH
Q 002299 322 ASGSRIIITTRDKQVLSN---CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV-PLALKVL 395 (940)
Q Consensus 322 ~~gs~iiiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 395 (940)
..+..||.||........ -.....+.++..+.++..+++..++....... .......|++.+.|. +-.|..+
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 345566667765432111 13446788999999999999988763322111 123456777888774 4444444
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.13 E-value=4.5e-05 Score=80.56 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=98.9
Q ss_pred CCCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhcc
Q 002299 190 DNKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQET 258 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (940)
.-.+++|.+..++++.+++.. +-...+.|.|+|++|+|||++|++++......| +.+.+
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~~------- 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIKG------- 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEECH-------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEEh-------
Confidence 345789999888888776642 123345789999999999999999998764322 22221
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH----------------HHHHHcccCC--
Q 002299 259 GGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ----------------IEFLIGRLDW-- 320 (940)
Q Consensus 259 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~l~~-- 320 (940)
..+.. ...+.. .......+.......+.++++|+++.... ...++..+..
T Consensus 83 ---~~l~~----~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 83 ---PELLT----MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp ---HHHHH----HHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred ---HHHHh----hhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 11221 111211 11222333333345678999999975321 2233322211
Q ss_pred CCCCcEEEEEeCChhhhh-h----CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCC-CchhhHHHHHHHHHhcCChh
Q 002299 321 FASGSRIIITTRDKQVLS-N----CRVDQIYDVKELVDVDALKLFSRCAFGEDDP-TASYTKLTHEAVKYAKGVPL 390 (940)
Q Consensus 321 ~~~gs~iiiTtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~PL 390 (940)
...+..||.||....... . ......+.++..+.++..+++..+....... ... ...+++.+.|.|-
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCH
Confidence 123556777776543221 1 1344678999999999999887766332211 111 2345555666554
No 206
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.10 E-value=6.2e-05 Score=80.76 Aligned_cols=182 Identities=14% Similarity=0.087 Sum_probs=100.7
Q ss_pred hhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHH------
Q 002299 198 ECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLST------ 271 (940)
Q Consensus 198 ~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~------ 271 (940)
+...+.+...+..+ .-.+.+.++|+.|+|||++|+.+++.+....... ...+ +.-.....+...
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c--------~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSC--------GHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCC--------SCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCC--------CCCHHHHHHhcCCCCCEE
Confidence 34455666666543 2345688999999999999999999764322100 0000 000000000000
Q ss_pred -hhCCC-CCCCchhhhHHHHHhh----hcCCceEEEEeCCCChH--HHHHHHcccCCCCCCcEEEEEeCChh-hhhhC-C
Q 002299 272 -LLDDR-NVKNFPYIILNFQSKR----FSCKKVLIVFDDVTHLK--QIEFLIGRLDWFASGSRIIITTRDKQ-VLSNC-R 341 (940)
Q Consensus 272 -~~~~~-~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~-~ 341 (940)
+.... ......++..+.+... ..+++-++|+|+++... ..+.++..+....++..+|++|.+.. +.... .
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 00000 0011111222211111 13456799999997643 35555555544455677777776653 32221 2
Q ss_pred CCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHh
Q 002299 342 VDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVLG 396 (940)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 396 (940)
....+.+++++.++..+.+.+.. . ...+.+..+++.++|.|..+..+.
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~---~----~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV---T----MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC---C----CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred cceeeeCCCCCHHHHHHHHHHhc---C----CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 34689999999999999998775 1 112456778999999997765543
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.00 E-value=8.3e-06 Score=75.65 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=35.4
Q ss_pred CccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 193 DLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+++|+...++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999887775422222347899999999999999998854
No 208
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.94 E-value=5.1e-07 Score=87.90 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=45.6
Q ss_pred cCCCCCccEEeeeCCCCCC----CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEec--cCCC
Q 002299 813 LCMFESLASLKIIDCPRLD----GLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYL--DDCP 886 (940)
Q Consensus 813 ~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L--~~n~ 886 (940)
+...++|++|+|++|.+.. .+...+...++|++|+|++|.|..-. ...+...+...++|+.|+| ++|.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g------~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG------ILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH------HHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH------HHHHHHHHHhCCCceEEEecCCCCC
Confidence 3344556666666665543 12233344456666666666654211 1112233344556666666 5555
Q ss_pred CCcc----cCCCcCCchhhhhhhccCCcc
Q 002299 887 NLHR----LPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 887 ~~~~----~p~~~~~l~~L~~L~l~~n~~ 911 (940)
+... +...+...++|++|++++|.+
T Consensus 135 i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 135 LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 5432 223344445666666666643
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.93 E-value=0.0001 Score=82.81 Aligned_cols=178 Identities=14% Similarity=0.134 Sum_probs=98.6
Q ss_pred CCccchhhhHHHHHHHhhcC-----------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 192 KDLVGVECRIKEIELLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
..++|.+..++++.+++... ....+-|.|+|++|+|||++|+++++.....| +.+.+ ......
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn~-~~l~~~-- 277 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLING-PEIMSK-- 277 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEEH-HHHHTS--
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEEc-hHhhhh--
Confidence 46899999999998876532 23345688999999999999999998763322 22222 111100
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh-------------HHHHHHHcccCC--CCCCc
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL-------------KQIEFLIGRLDW--FASGS 325 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~gs 325 (940)
.. ..........+.....+++.+|+||+++.. .....++..+.. ...+.
T Consensus 278 -----------~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 278 -----------LA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp -----------CT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred -----------hc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 00 001111222333334456789999998321 112223222211 12345
Q ss_pred EEEEEeCChhh-----hhhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCC-hhhHHH
Q 002299 326 RIIITTRDKQV-----LSNCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGV-PLALKV 394 (940)
Q Consensus 326 ~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~ 394 (940)
.||.||..... .........+.++..+.++..+++..++........ ....++++.+.|. +-.+..
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHH
Confidence 56666665432 111234457899999999999999887633221111 1134566666664 433443
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.93 E-value=0.00014 Score=74.84 Aligned_cols=180 Identities=16% Similarity=0.093 Sum_probs=94.0
Q ss_pred CCCCCccchhhhHHHHHHHhhc---C-------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhcc
Q 002299 189 SDNKDLVGVECRIKEIELLLRT---G-------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQET 258 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (940)
..-.+++|.+..++++.+++.. . ....+-+.|+|++|+||||+|+.+++.....| +.+... .....
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~~~-~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGS-DFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECSC-SSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEeHH-HHHHH
Confidence 3446789988887777654321 1 11233488999999999999999998764332 233211 00000
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh----------------HHHHHHHcccCC--
Q 002299 259 GGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL----------------KQIEFLIGRLDW-- 320 (940)
Q Consensus 259 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~-- 320 (940)
. ...........+.......+.++++|+++.. ..+..++..+..
T Consensus 85 -------------~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 85 -------------F-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp -------------C-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred -------------h-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 0 0011112222333333445679999998321 112333322221
Q ss_pred CCCCcEEEEEeCChhhh-hhC----CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcC-ChhhHH
Q 002299 321 FASGSRIIITTRDKQVL-SNC----RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKG-VPLALK 393 (940)
Q Consensus 321 ~~~gs~iiiTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~ 393 (940)
...+..||.||...... ... .....+.++..+.++..+++..+.-......+ .....++..+.| .+--|+
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHH
Confidence 12345667777654322 111 23457888888888888888766522111111 113445666666 554444
No 211
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.93 E-value=0.00051 Score=73.57 Aligned_cols=174 Identities=18% Similarity=0.193 Sum_probs=96.1
Q ss_pred CCCCccchhhhHHHHHHHhhcC---CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTG---SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQ 266 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (940)
....++|.+..++.+...+..+ ......+.|+|++|+||||||+.++..+...|. ... ... ......+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~--~~~~~~l-- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPV--LVKQGDM-- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTT--CCSHHHH--
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chH--hcCHHHH--
Confidence 4467889888888887766542 223456899999999999999999997743321 111 000 0001111
Q ss_pred HHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH--HHHHHHcccCCC--------C----------CCcE
Q 002299 267 QLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK--QIEFLIGRLDWF--------A----------SGSR 326 (940)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~--------~----------~gs~ 326 (940)
...+ ..+ .++-++++|+++... ..+.+...+... + +...
T Consensus 94 -------------------~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 94 -------------------AAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -------------------HHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -------------------HHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1111 111 134477788875432 222222111100 0 1112
Q ss_pred E-EEEeCChhhhhhC--CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHHHH
Q 002299 327 I-IITTRDKQVLSNC--RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALKVL 395 (940)
Q Consensus 327 i-iiTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 395 (940)
+ -.|++...+...+ .......+++.+.++-.+++.+.+-... .....+.+..|++.+.|.|-.+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 2 2344433322111 2234688999999999999987763211 1223466888999999999755433
No 212
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00011 Score=78.87 Aligned_cols=173 Identities=17% Similarity=0.198 Sum_probs=98.2
Q ss_pred CCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 191 NKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +.+.. .+.....
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~-s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVSG-AELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEEG-GGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEh-HHhhccc
Confidence 35678888888888765432 223345688999999999999999999875544 12221 1110000
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----------------HHHHHHcccCCC--
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----------------QIEFLIGRLDWF-- 321 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~-- 321 (940)
.......+.+.+...-...+++|.+|+++... .+..++..+...
T Consensus 223 ------------------vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 223 ------------------IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ------------------cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 00011111122222224478999999986421 133344333322
Q ss_pred CCCcEEEEEeCChhhh-----hhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCC-CchhhHHHHHHHHHhcCCh
Q 002299 322 ASGSRIIITTRDKQVL-----SNCRVDQIYDVKELVDVDALKLFSRCAFGEDDP-TASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 322 ~~gs~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 389 (940)
..+..||.||-..+.. ..-..+..+.++..+.++..++|..+.-+.... ..+ ..++++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 2344556666544332 122456789999999999999998776332211 112 356677777653
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=6.1e-05 Score=81.22 Aligned_cols=182 Identities=13% Similarity=0.188 Sum_probs=102.6
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEecchhhhccCCHHHHHHHH
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHNVREAQETGGLAHLRQQL 268 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (940)
....++|.+..++.+...+..+. .+.+.++|++|+||||+|+.++..+... +...+.-.+. ....+...+. ..
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~~~~ir-~~ 96 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRGIDVVR-NQ 96 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCSHHHHH-TH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cccccHHHHH-HH
Confidence 34568898888899988887542 2238899999999999999999876432 2111111111 1111222211 11
Q ss_pred HHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCChh-hhhh-CCCCc
Q 002299 269 LSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDKQ-VLSN-CRVDQ 344 (940)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~-~~~~~ 344 (940)
...+.... ....+.+-++|+|+++.. +..+.+...+.......++|++|.... +... .....
T Consensus 97 i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11111000 001234668999998653 233334333322345667777765432 1111 12235
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 002299 345 IYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVPLALK 393 (940)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (940)
.+.+.+++.++..+.+.+.+-.... .-..+..+.+++.++|.+--+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 7899999999998888776632221 1123456788899999887443
No 214
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.91 E-value=0.00012 Score=82.18 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=82.3
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc------cceEEEecchhhhccCCHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF------EGSYFAHNVREAQETGGLA 262 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 262 (940)
...+.+|||+.+++.+...+.... ..-+.|+|++|+|||++|+.+++.+...+ +..++..+..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 345679999999999999987532 23467999999999999999999874432 1122211110
Q ss_pred HHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhhh----
Q 002299 263 HLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVLS---- 338 (940)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~---- 338 (940)
....+. ... .....+...-..++.+|++| ...+....+...+. ....++|.+|.......
T Consensus 246 -------~~~~g~--~e~---~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -------TKYRGE--FED---RLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp ----------------CT---THHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -------ccccch--HHH---HHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 000000 001 11222222223467899999 22222333433332 22355666655443111
Q ss_pred --h-CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 339 --N-CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 339 --~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
. ...-..+.++..+.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0 0122468999999999999998655
No 215
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=9e-06 Score=76.74 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=26.2
Q ss_pred CCCcEEEecCCCCCcccccccCCCCCCcEEEecCCCCC
Q 002299 737 YNLRSIDLLNCTRLEYIASSIFTLKSLESIRISKCSNL 774 (940)
Q Consensus 737 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 774 (940)
.+|+.|++++|.+...-...+.++++|++|+|++|..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~I 98 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI 98 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCcc
Confidence 46777777777765554455667777777777777644
No 216
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.80 E-value=8.8e-05 Score=90.27 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=81.8
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc------cceEEEecchhhhccCCHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF------EGSYFAHNVREAQETGGLA 262 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 262 (940)
...+.+|||+.+++++.+.+.... .+-+.|+|++|+|||++|+.+++++.... ...++.......
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l------- 237 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL------- 237 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh-------
Confidence 445679999999999999886533 23478999999999999999999774321 222222111110
Q ss_pred HHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc-CCceEEEEeCCCChHH----------HHHHHcccCCCCCCcEEEEEe
Q 002299 263 HLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS-CKKVLIVFDDVTHLKQ----------IEFLIGRLDWFASGSRIIITT 331 (940)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~----------~~~l~~~l~~~~~gs~iiiTt 331 (940)
.. +..............+..... +++.+|++|+++.... ...+...+. ..+..+|.+|
T Consensus 238 --~~-------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at 306 (854)
T 1qvr_A 238 --LA-------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEE
T ss_pred --hc-------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEec
Confidence 00 000000011111222222222 3678999999976431 111222221 2334566555
Q ss_pred CChhh-----hhhC-CCCcEEEcCCCCHHHHHHHHHHh
Q 002299 332 RDKQV-----LSNC-RVDQIYDVKELVDVDALKLFSRC 363 (940)
Q Consensus 332 R~~~~-----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 363 (940)
..... ...+ .....+.+++++.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 53322 1111 12235899999999999998643
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00029 Score=76.67 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=96.0
Q ss_pred CCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 192 KDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .+.. .......
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi---~vs~-s~L~sk~- 283 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI---RVIG-SELVQKY- 283 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EEEG-GGGCCCS-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE---EEEh-HHhhccc-
Confidence 5688899888888765421 2234667899999999999999999998755431 2221 1110000
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----------------HHHHHHcccCCC--C
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----------------QIEFLIGRLDWF--A 322 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~ 322 (940)
.......+...+...-...+++|++|+++... .+..++..+... .
T Consensus 284 -----------------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 284 -----------------VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp -----------------SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred -----------------CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 00011111122222234578999999986421 122233332222 2
Q ss_pred CCcEEEEEeCChhhh-----hhCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCC-CchhhHHHHHHHHHhcCC
Q 002299 323 SGSRIIITTRDKQVL-----SNCRVDQIYDVKELVDVDALKLFSRCAFGEDDP-TASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 323 ~gs~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~ 388 (940)
.+..||.||-..... ..-..+..+.++..+.++..++|..+.-+-... .-+ ...|++.+.|.
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 233455566443322 112456789999999999999998776332211 112 35566777765
No 218
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=0.0001 Score=71.17 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHhhcCC-CCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 197 VECRIKEIELLLRTGS-AGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 197 r~~~~~~l~~~l~~~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
....++.+.+++..-. .....+.|+|++|+||||||+.++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344455555554321 2346799999999999999999999775
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00025 Score=77.42 Aligned_cols=172 Identities=19% Similarity=0.274 Sum_probs=97.3
Q ss_pred CCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 191 NKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +.+.. .......
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~-s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSPA-SGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEG-GGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeh-hhhcccc
Confidence 45678898888888765432 223456789999999999999999999875443 12221 1110000
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----------------HHHHHHcccCCC--
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----------------QIEFLIGRLDWF-- 321 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~-- 321 (940)
...........+...-...+++|.+|+++... .+..++..+...
T Consensus 256 ------------------~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 256 ------------------IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ------------------SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ------------------chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 00011111122222224578999999996420 123343333222
Q ss_pred CCCcEEEEEeCChhhhhh-C----CCCcEEEcCCCCHHHHHHHHHHhhcCCCC-CCchhhHHHHHHHHHhcCC
Q 002299 322 ASGSRIIITTRDKQVLSN-C----RVDQIYDVKELVDVDALKLFSRCAFGEDD-PTASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 322 ~~gs~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~ 388 (940)
..+..||.||-....... + ..+..+.++..+.++..++|..+.-+... ...+ ...+++.+.|.
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGF 386 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCC
Confidence 234566777765443221 1 23567889988999989998877643221 1112 34566677664
No 220
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.77 E-value=6.9e-05 Score=74.00 Aligned_cols=61 Identities=23% Similarity=0.178 Sum_probs=40.9
Q ss_pred CCCccchh----hhHHHHHHHhhcCCCC--eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 191 NKDLVGVE----CRIKEIELLLRTGSAG--VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 191 ~~~~vGr~----~~~~~l~~~l~~~~~~--~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
.++|++.. ..++.+.+++...... .+.+.|+|++|+|||+||+++++....+...++|+..
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 34566544 3444555665543221 2678999999999999999999987665555666643
No 221
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00012 Score=80.06 Aligned_cols=171 Identities=16% Similarity=0.174 Sum_probs=95.5
Q ss_pred CCCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhcc
Q 002299 190 DNKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQET 258 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (940)
.-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||++++......|- .+. .......
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL---KLA-APQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE---EEe-hhhhhhc
Confidence 346788999888888764321 2234567899999999999999999998754431 121 1111000
Q ss_pred -CC-HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh------------H----HHHHHHcccCC
Q 002299 259 -GG-LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL------------K----QIEFLIGRLDW 320 (940)
Q Consensus 259 -~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~----~~~~l~~~l~~ 320 (940)
.+ -....+.+ +...-...+++|.+|+++.. . .+..++..+..
T Consensus 255 ~vGese~~ir~l--------------------F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 255 YIGEGAKLVRDA--------------------FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp CSSHHHHHHHHH--------------------HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHH--------------------HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 00 01111111 11122236889999998431 0 12334444443
Q ss_pred CC--CCcEEEEEeCChhhhhh-C----CCCcEEEcCCCCHHHHHHHHHHhhcCCCC-CCchhhHHHHHHHHHhcCC
Q 002299 321 FA--SGSRIIITTRDKQVLSN-C----RVDQIYDVKELVDVDALKLFSRCAFGEDD-PTASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 321 ~~--~gs~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~ 388 (940)
.. .+..||.||........ + ..+..+.++..+.++..++|..+.-+-.. ..-+ ..++++.+.|.
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 32 23345556665443221 1 34567899999999989988766532211 1112 34566677664
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00012 Score=79.85 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=40.2
Q ss_pred CCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 191 NKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 35678899888888765432 223456689999999999999999999875443
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.71 E-value=6e-05 Score=80.18 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=37.5
Q ss_pred CCccchhhhHHHHHHHhhc------------CCCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 192 KDLVGVECRIKEIELLLRT------------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~------------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..++|.+..++.+...+.. .......+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999888888776643 011234578999999999999999998774
No 224
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.71 E-value=1.9e-06 Score=83.82 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=52.4
Q ss_pred CCceEEEcCCCCCCc----cccCccCCCCCccEEeeeCCCCCCC----CCccCCCCCCCCEEEc--cCCCCccCchhHHH
Q 002299 793 QALSKLELNNCSRLE----SFPSSLCMFESLASLKIIDCPRLDG----LPDELGNLKALEELTV--EGTAMREVPESLGQ 862 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L--~~n~l~~lp~~l~~ 862 (940)
++|++|+|++|.+.. .+...+...++|++|+|++|.+... +...+...++|++|+| ++|.+..-.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g----- 139 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV----- 139 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH-----
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH-----
Confidence 344444554444332 1222233446677788887776542 3455667778888888 778776311
Q ss_pred hhhccCccccCCCCCCEEeccCCCCC
Q 002299 863 LLESLPSSLYKSKCLQDSYLDDCPNL 888 (940)
Q Consensus 863 l~~~lp~~~~~l~~L~~L~L~~n~~~ 888 (940)
...+...+...++|+.|+|++|.+.
T Consensus 140 -~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 -EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1112233445678888888888753
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.70 E-value=0.00042 Score=83.44 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=88.6
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc------ccceEEEecchhhhccCCHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH------FEGSYFAHNVREAQETGGLA 262 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~ 262 (940)
...+.++||+.+++++.+.+.... ..-+.|+|++|+|||++|+.+++++... ....+|.......
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------- 253 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------- 253 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------
Confidence 345679999999999999887542 3447899999999999999999876432 1222332211110
Q ss_pred HHHHHHHHHhhCCCCCCCchhh-hHHHHHhhhcCCceEEEEeCCCCh----------HHHHHHHcccCCCCCCcEEEEEe
Q 002299 263 HLRQQLLSTLLDDRNVKNFPYI-ILNFQSKRFSCKKVLIVFDDVTHL----------KQIEFLIGRLDWFASGSRIIITT 331 (940)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iiiTt 331 (940)
..+.. .....+. ....+......++.+|++|+++.. .+...++..+.. ..+.++|.+|
T Consensus 254 ---------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at 322 (758)
T 1r6b_X 254 ---------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGST 322 (758)
T ss_dssp ----------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEE
T ss_pred ---------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEe
Confidence 00000 1111111 222222222335789999999754 122233333221 2345666666
Q ss_pred CChhhhhhC-------CCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 332 RDKQVLSNC-------RVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 332 R~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
......... .....+.++..+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544321111 112368999999999988887543
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.68 E-value=0.00084 Score=74.60 Aligned_cols=174 Identities=16% Similarity=0.144 Sum_probs=96.1
Q ss_pred CCCccchhhhHHHHHHHhhc--C--------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 191 NKDLVGVECRIKEIELLLRT--G--------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~--~--------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
..+++|.+..++++.+.... . ..-.+-|.|+|++|+|||+||++++.+....| +.+.. .+......
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is~-~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHISG-SDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEEG-GGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCCH-HHHHHHHh
Confidence 35689988887777655431 1 11123488999999999999999999764333 22222 11111000
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh----------------HHHHHHHcccCCC--C
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL----------------KQIEFLIGRLDWF--A 322 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~ 322 (940)
..........+.......+.+|++|+++.. ..+..++..+... .
T Consensus 91 ------------------g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 91 ------------------GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ------------------THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ------------------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 000111222333334457889999998542 1133333322211 2
Q ss_pred CCcEEEEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh
Q 002299 323 SGSRIIITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 323 ~gs~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 389 (940)
.+..||.||........ ......+.++..+.++-.+++..++-......+ . ....+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~-v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED-V--NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT-C--CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch-h--hHHHHHHhcCCCc
Confidence 35567777766543321 123457889999988888888776633221111 1 1345777777776
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.64 E-value=0.00039 Score=71.83 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999888888766643222234578999999999999999998653
No 228
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.64 E-value=0.00027 Score=75.14 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=41.8
Q ss_pred CccchhhhHHHHHHHhhcCC------C-CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 193 DLVGVECRIKEIELLLRTGS------A-GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~~------~-~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.++|.+..++.+...+.... . ....+.|+|++|+|||++|+.++......-...+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 67899988888877665421 1 1357899999999999999999997644333334444
No 229
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=0.00021 Score=74.98 Aligned_cols=146 Identities=10% Similarity=0.079 Sum_probs=87.1
Q ss_pred chhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh---ccccceEEEecchhhhccCCHHHHHHHHHHHh
Q 002299 196 GVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS---KHFEGSYFAHNVREAQETGGLAHLRQQLLSTL 272 (940)
Q Consensus 196 Gr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 272 (940)
|-+..++.+.+.+..+. .+...++|++|+||||+|+.+++... ...+...++... ....++..+ +++....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDI-RTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHH-HHHHHHH
Confidence 34556677788776554 67888999999999999999987531 122333444321 001222222 2232222
Q ss_pred hCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh--HHHHHHHcccCCCCCCcEEEEEeCCh-hhhhhCCCCcEEEcC
Q 002299 273 LDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL--KQIEFLIGRLDWFASGSRIIITTRDK-QVLSNCRVDQIYDVK 349 (940)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~~~~~~~~l~ 349 (940)
.... ..+++-++|+|+++.. +..+.++..+....+.+.+|++|.+. .+....... .+++.
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 1111 1234568999999764 33555555544445677777776544 344433334 89999
Q ss_pred CCCHHHHHHHHHHhh
Q 002299 350 ELVDVDALKLFSRCA 364 (940)
Q Consensus 350 ~L~~~ea~~Lf~~~~ 364 (940)
+++.++..+.+.+.+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998776
No 230
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=1.6e-05 Score=81.19 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=33.1
Q ss_pred CCCccEEeeeCCCCCC--CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCCCcccC
Q 002299 816 FESLASLKIIDCPRLD--GLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPNLHRLP 892 (940)
Q Consensus 816 l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~~~~~p 892 (940)
+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+..+.. +. .+..+ +|+.|+|++|++.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~--------~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LD--------KIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GG--------GGTTS-CCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hh--------hcccC-CcceEEccCCcCccccC
Confidence 4555555555555544 233334455666666666666554421 11 11223 56666666666554443
No 231
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.60 E-value=5.2e-05 Score=78.69 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=83.1
Q ss_pred CCCCccchhhhHHHHHHHhhc----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 190 DNKDLVGVECRIKEIELLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
....++|.+..++++.+.+.. +....+-+.|+|++|+|||++|+++++.....|-. +.. ....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~~-~~~~--- 81 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MGG-SSFI--- 81 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CCS-CTTT---
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ech-HHHH---
Confidence 346799999888888766541 11112337799999999999999999976544321 111 0000
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH-----------------HHHHHcccCCC-
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ-----------------IEFLIGRLDWF- 321 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------------~~~l~~~l~~~- 321 (940)
....+.. ........+ .....++.+|++|+++.... +..+...+...
T Consensus 82 ----------~~~~~~~--~~~~~~~~~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 82 ----------EMFVGLG--ASRVRDLFE---TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp ----------TSCSSSC--SSSSSTTHH---HHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred ----------HhhcchH--HHHHHHHHH---HHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 0000100 111112222 22223568999999965321 22233222211
Q ss_pred --CCCcEEEEEeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 322 --ASGSRIIITTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 322 --~~gs~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
.....||.||....... .......+.++..+.++..+++...+
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 12245666666543211 11233567888888888888887665
No 232
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00043 Score=74.53 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=94.1
Q ss_pred CCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 191 NKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||++++......|- .+. ..+.....
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhhcc
Confidence 35678888888888765432 2234567999999999999999999998755432 121 11110000
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh----------------HHHHHHHcccCCC--
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL----------------KQIEFLIGRLDWF-- 321 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~-- 321 (940)
.......+...+...-...+++|.+|+++.. ..+..++..+...
T Consensus 257 ------------------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 257 ------------------LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp ------------------SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred ------------------CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0000111111222222346899999998531 0122333322211
Q ss_pred CCCcEEEEEeCChhhhh-hC----CCCcEEEcCCCCHHHHHHHHHHhhcCCCCC-CchhhHHHHHHHHHhcCC
Q 002299 322 ASGSRIIITTRDKQVLS-NC----RVDQIYDVKELVDVDALKLFSRCAFGEDDP-TASYTKLTHEAVKYAKGV 388 (940)
Q Consensus 322 ~~gs~iiiTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~ 388 (940)
..+..||.||-..+... .+ ..+..+.++.-+.++..++|..+.-+-... ..+ ...+++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 23445566665444322 11 234578899889999999998776332211 112 34566666664
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.56 E-value=0.0005 Score=82.62 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=83.4
Q ss_pred CCCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc------cceEEEecchhhhccCCHH
Q 002299 189 SDNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF------EGSYFAHNVREAQETGGLA 262 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 262 (940)
...+.+|||+.+++++...+.... ..-+.|+|++|+|||++|+.+++.+.... ...++....
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 345679999999999999987533 23478999999999999999999863321 112221110
Q ss_pred HHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhhh----
Q 002299 263 HLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVLS---- 338 (940)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~---- 338 (940)
.....+ .........+......++.+|++| ...+....+.+.+. ....++|.||.......
T Consensus 245 ------g~~~~G-----~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ------GTKYRG-----EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------cccccc-----hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000 001112222333334577899999 22222333443333 33456666665443100
Q ss_pred --hC-CCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 339 --NC-RVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 339 --~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
.. ..-..+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 112568999999999999998654
No 234
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=4e-05 Score=72.30 Aligned_cols=91 Identities=15% Similarity=0.342 Sum_probs=42.3
Q ss_pred cCCCCCC--CCcceEEeCCCCCchhhhhhhccccccccccccccccccCCCceeeCCCCCCCCcCC--CcccC----CCc
Q 002299 576 HFEGAPF--TDVRYFEWHKSPLKSLNIRAENLVSLILPGRLWDDVQNLVNLKEIDLSDSKQLTKLP--DLSLA----RNL 647 (940)
Q Consensus 576 ~l~~~~~--~~L~~L~l~~~~l~~l~l~~~~L~~l~l~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l----~~L 647 (940)
.+|.... ..|+.|+++++.+....+ ..+..+++|++|+|++|..++... .++.+ ++|
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL---------------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L 116 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGF---------------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGG---------------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHH---------------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC
Confidence 5555432 456666666665544322 123455566666666654333211 13332 245
Q ss_pred cEEeccCCCCCcc-ccccccCCCcccEEEecCCCC
Q 002299 648 ESLDLWGCSSLME-THSSIQYLNKLAFLYLVSCES 681 (940)
Q Consensus 648 ~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~ 681 (940)
++|+|++|..++. .-..+..+++|++|++++|..
T Consensus 117 ~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred CEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence 5555555543322 122344455555555555543
No 235
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.50 E-value=0.00065 Score=71.48 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=37.3
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 368999999998887775532223447899999999999999999854
No 236
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.45 E-value=3.4e-05 Score=71.25 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=33.4
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 367899998888887765321222347799999999999999988754
No 237
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.43 E-value=0.0024 Score=71.49 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=37.9
Q ss_pred CCCccchhhhHHHHHHHh---hcCCCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 191 NKDLVGVECRIKEIELLL---RTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l---~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...++|.+..++.+..++ ..+....+-+.++|++|+|||++|+++++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 368999998877655443 33333335688999999999999999998765
No 238
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.39 E-value=0.0023 Score=65.43 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=79.8
Q ss_pred CCCCccchhhhHHHHHHHhhc--C--------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 190 DNKDLVGVECRIKEIELLLRT--G--------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~--~--------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
..++++|.+....++.++... . -.-.+-+.|+|++|+||||||+.++..... ..+.+... ......
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~~-~~~~~~ 89 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASGS-DFVEMF 89 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHH-HHHHSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeeHH-HHHHHH
Confidence 345788887766666543321 0 011123899999999999999999987642 22333221 100000
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----------------HHHHHHcccCCC--
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----------------QIEFLIGRLDWF-- 321 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~-- 321 (940)
. ..........++..-...+.++++|+++... .+..+...+...
T Consensus 90 -~-----------------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 90 -V-----------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp -T-----------------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred -h-----------------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 0 0000111112222222356799999984221 122333222211
Q ss_pred CCCcEEEEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 322 ASGSRIIITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 322 ~~gs~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
.....++.||........ ......+.++..+.++-.+++..++
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 122344556665544321 1345678999999998888887665
No 239
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.36 E-value=0.00026 Score=65.61 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=27.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
-..++|+|+.|+|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 457999999999999999999987654311255554
No 240
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.34 E-value=0.004 Score=64.64 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=90.5
Q ss_pred CCCCCCccchhhhHHHHHHHhhcC---------C-CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhc
Q 002299 188 QSDNKDLVGVECRIKEIELLLRTG---------S-AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQE 257 (940)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~l~~~---------~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (940)
....++++|.+..++++.++...- + .-.+-+.|+|++|+||||||+.++..... ..+.+... ....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~~-~~~~ 111 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASGS-DFVE 111 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHH-HHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEecHH-HHHH
Confidence 344567899887776665543210 0 11122899999999999999999987642 23333321 1000
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh----------------HHHHHHHcccCCC
Q 002299 258 TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL----------------KQIEFLIGRLDWF 321 (940)
Q Consensus 258 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~ 321 (940)
.. . ..........++......+.++++|+++.. ..+..+...+...
T Consensus 112 ~~-~-----------------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 112 MF-V-----------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp ST-T-----------------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred HH-h-----------------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 00 0 000001112222222235679999998421 1123333333322
Q ss_pred C--CCcEEEEEeCChhhhh-----hCCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh
Q 002299 322 A--SGSRIIITTRDKQVLS-----NCRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 322 ~--~gs~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 389 (940)
. ....++.||....... .......+.++..+.++-.+++..++-+.....+ .....++..+.|..
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 1 1233455565554322 1134568899999999888888766532111111 11334566666644
No 241
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.34 E-value=0.00078 Score=80.93 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=82.8
Q ss_pred CCccchhhhHHHHHHHhhcCC-------CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHH
Q 002299 192 KDLVGVECRIKEIELLLRTGS-------AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHL 264 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (940)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-...+.+.+ ..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~-s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM-SEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG-GGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec-hhcccccccc--
Confidence 468999998888877765321 112368999999999999999999976443333444443 2221111100
Q ss_pred HHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChHH--HHHHHcccCC-----------CCCCcEEEEEe
Q 002299 265 RQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLKQ--IEFLIGRLDW-----------FASGSRIIITT 331 (940)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~~l~~-----------~~~gs~iiiTt 331 (940)
.......+++ ...-+|+||+++.... ...+...+.. .....+||+||
T Consensus 568 -----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 1112222222 2345899999975432 3333222111 12346888888
Q ss_pred CChh-----h----hhh------CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 332 RDKQ-----V----LSN------CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 332 R~~~-----~----~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
.... + ... ...+.++.+.+++.++..+++...+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 7311 0 000 1233578899999888877776543
No 242
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.26 E-value=0.00013 Score=74.48 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=44.1
Q ss_pred CCceEEEcCCCCCCc--cccCccCCCCCccEEeeeCCCCCCC-CCccCCCCCCCCEEEccCCCCcc-CchhHHHhhhccC
Q 002299 793 QALSKLELNNCSRLE--SFPSSLCMFESLASLKIIDCPRLDG-LPDELGNLKALEELTVEGTAMRE-VPESLGQLLESLP 868 (940)
Q Consensus 793 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~~lp 868 (940)
++|+.|+|++|.+.. .+|..+..+++|+.|+|++|.+.+. -...+..+ +|++|+|++|++.. +|..-. ...
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~----y~~ 244 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST----YIS 244 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH----HHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchh----HHH
Confidence 444455555544433 3334445667777777777776652 11223333 78888888888753 331100 001
Q ss_pred ccccCCCCCCEEe
Q 002299 869 SSLYKSKCLQDSY 881 (940)
Q Consensus 869 ~~~~~l~~L~~L~ 881 (940)
..+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1234567777765
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.25 E-value=0.0016 Score=76.71 Aligned_cols=173 Identities=15% Similarity=0.183 Sum_probs=96.7
Q ss_pred CCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 192 KDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
.++.|.+..+++|.+++.. +...++-|.++|++|.|||+||+++++.....| +.+.. .+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~-~~l----- 274 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLING-PEI----- 274 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEH-HHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEh-HHh-----
Confidence 4678888888888766532 113356789999999999999999998664332 22322 111
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH-------------HHHHHHcccCCC--CCCc
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-------------QIEFLIGRLDWF--ASGS 325 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~--~~gs 325 (940)
.... .......+...+.......+.+|++|+++... ....++..+... ..+.
T Consensus 275 --------~sk~-----~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 275 --------MSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp --------HSSC-----TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred --------hccc-----chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 0000 01111122233333445678999999985421 123333222211 1233
Q ss_pred EEEEEeCChhhhh-hC----CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh
Q 002299 326 RIIITTRDKQVLS-NC----RVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 326 ~iiiTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 389 (940)
.||.||...+... .+ ..+..++++..+.++-.+++..+.-+.....+ .-..++++.+.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 4555655443221 11 34568899999999999999877633211111 11456777777764
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.18 E-value=0.0075 Score=67.41 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=92.3
Q ss_pred CCCCCccchhhhHHHHHHHhhc---C-------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhcc
Q 002299 189 SDNKDLVGVECRIKEIELLLRT---G-------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQET 258 (940)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (940)
....+++|.+..+.++.++... . -.-.+-|.|+|++|+||||||++++...... .+.+... .....
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~g~-~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGS-DFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEEGG-GGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEehh-HHHHh
Confidence 3456789988877776654321 1 0112338999999999999999999876422 2333321 11110
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh----cCCceEEEEeCCCCh----------------HHHHHHHccc
Q 002299 259 GGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF----SCKKVLIVFDDVTHL----------------KQIEFLIGRL 318 (940)
Q Consensus 259 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~LlVlDdv~~~----------------~~~~~l~~~l 318 (940)
. .. .....+...+ ...+.++++|+++.. ..+..++..+
T Consensus 104 ~-~g---------------------~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 104 F-VG---------------------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp C-TT---------------------HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred h-hh---------------------hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 0 00 0011111111 124579999998431 1133444333
Q ss_pred CCC--CCCcEEEEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhcCCh
Q 002299 319 DWF--ASGSRIIITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCAFGEDDPTASYTKLTHEAVKYAKGVP 389 (940)
Q Consensus 319 ~~~--~~gs~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 389 (940)
... ..+..|+.||........ ...+..+.++..+.++-.+++..++-+.....+ .....++..+.|..
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 322 223445556665544321 123468899999999999988876532211111 11345666777764
No 245
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.06 E-value=0.016 Score=59.76 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=78.7
Q ss_pred CCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 192 KDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
.++.|.+...++|.+.+.. +-.-.+-+.|+|++|+||||||+.++..... ..+++... +.. ...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~-~l~-~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVKGP-ELL-NMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEETT-TTC-SST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcH-HHH-hhh
Confidence 3566666666666543211 0011122899999999999999999986543 23333321 100 000
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH-------------HHHHHHcccCCC--CCCc
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK-------------QIEFLIGRLDWF--ASGS 325 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~--~~gs 325 (940)
.....+ .+....+..-...+.++++|+++... ....+...+... ....
T Consensus 85 ~~~~~~-----------------~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 85 VGESER-----------------AVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp THHHHH-----------------HHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred hhHHHH-----------------HHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 011000 01111111112357799999986421 122222222211 2234
Q ss_pred EEEEEeCChhhhhh-----CCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 326 RIIITTRDKQVLSN-----CRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 326 ~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
-++.+|....+... ...+..+.++..+.++..+++....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 45666666554322 1456788899999999999998765
No 246
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.02 E-value=0.0031 Score=65.90 Aligned_cols=30 Identities=37% Similarity=0.534 Sum_probs=25.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..++.+.++|++|+|||+||+++++.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345678899999999999999999987443
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.00 E-value=0.0032 Score=75.51 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=84.9
Q ss_pred CCCccchhhhHHHHHHHhhc-----------CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccC
Q 002299 191 NKDLVGVECRIKEIELLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETG 259 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (940)
-..++|.+..++++.+++.. +-.....|.|+|++|+||||||+.++......| +.+... .... .
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~~~-~l~~-~ 277 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGP-EIMS-K 277 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEEHH-HHSS-S
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEEch-Hhhh-h
Confidence 35789999999988877753 123345689999999999999999998664333 233221 1100 0
Q ss_pred CHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCCh---------H----HHHHH---HcccCCCCC
Q 002299 260 GLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHL---------K----QIEFL---IGRLDWFAS 323 (940)
Q Consensus 260 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~----~~~~l---~~~l~~~~~ 323 (940)
. ...........++......+.++++|+++.. + ....+ ..... ...
T Consensus 278 ~-----------------~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~ 339 (806)
T 1ypw_A 278 L-----------------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (806)
T ss_dssp S-----------------TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTS
T ss_pred h-----------------hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccc
Confidence 0 0000111122222333346789999998321 0 11222 22222 123
Q ss_pred CcEEEEEeCChhhhh-hC----CCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 324 GSRIIITTRDKQVLS-NC----RVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 324 gs~iiiTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
+..+|.||....... .. .....+.+...+.++..+++...+
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 445566665542221 11 233567888899999999988765
No 248
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.92 E-value=0.0043 Score=67.63 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+.|+|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998774
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.75 E-value=0.0012 Score=63.20 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=60.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHh--hCCCC--CC-------Cchhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTL--LDDRN--VK-------NFPYI 284 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~--~~-------~~~~~ 284 (940)
..|.|++-.|.||||.|...+-+...+=-.+.++...... ...+...+.+.+.-.+ .+... .. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4567777777999999999998766554444444322210 1122223333320000 00000 00 11122
Q ss_pred hHHHHHhhhcCCce-EEEEeCCCCh-----HHHHHHHcccCCCCCCcEEEEEeCCh
Q 002299 285 ILNFQSKRFSCKKV-LIVFDDVTHL-----KQIEFLIGRLDWFASGSRIIITTRDK 334 (940)
Q Consensus 285 ~~~~l~~~l~~~~~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iiiTtR~~ 334 (940)
..+..++.+.+.++ |||||++... -..+.+...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 33445555655555 9999998322 11222322222335678899999986
No 250
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.66 E-value=0.0044 Score=74.54 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=37.2
Q ss_pred CCccchhhhHHHHHHHhhcCC-------CCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 192 KDLVGVECRIKEIELLLRTGS-------AGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 458899988888876664311 123468999999999999999999977
No 251
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.64 E-value=0.0065 Score=60.43 Aligned_cols=46 Identities=22% Similarity=0.119 Sum_probs=31.3
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
.|..++..+-..-.++.|.|.+|+||||||..++. ..-..++|+..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 44445532223345899999999999999999988 22245666653
No 252
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.59 E-value=0.0061 Score=64.05 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=36.0
Q ss_pred hhhHHHHHHHhhcCCC-CeeEEEEEecCCchhhHHHHHHHHHhh-ccccceEEEe
Q 002299 198 ECRIKEIELLLRTGSA-GVCKLGIWGIGGIGKTTIAGAIFTKMS-KHFEGSYFAH 250 (940)
Q Consensus 198 ~~~~~~l~~~l~~~~~-~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~ 250 (940)
...++.+.+++..... ....+.|+|++|+|||+||.++++... .+...+.++.
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3344455566654322 245688999999999999999999776 5444455554
No 253
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.0026 Score=57.15 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=8.3
Q ss_pred CCCEEEccCCCCccCc
Q 002299 842 ALEELTVEGTAMREVP 857 (940)
Q Consensus 842 ~L~~L~L~~n~l~~lp 857 (940)
+|+.|+|++|+|+.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~ 47 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP 47 (130)
T ss_dssp TCSEEECTTSCCSSCC
T ss_pred CCCEEECCCCcCCccC
Confidence 4555555555555444
No 254
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.57 E-value=0.0045 Score=70.69 Aligned_cols=51 Identities=27% Similarity=0.298 Sum_probs=35.8
Q ss_pred CccchhhhHHHHHHHhhc----CCCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 193 DLVGVECRIKEIELLLRT----GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
.++|.+...+.+...+.. .......+.|+|++|+||||||+.++......|
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 467877766666443321 112345799999999999999999999775443
No 255
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.47 E-value=0.0019 Score=55.28 Aligned_cols=63 Identities=6% Similarity=0.032 Sum_probs=46.8
Q ss_pred CCcccEEEcCcccccCCcchHHHHHHHHhCCCcEEecCCCCCCCcchHHHHHHHHhcceEEEEecCCccchhhhHHHHHH
Q 002299 19 KNKYDVFLSFRGEDTRGNFTSHLFSALSKKHIETFIDDQLIRGDEISQSLLDAIEASTISVIIFSEGYASSKWCLDELLK 98 (940)
Q Consensus 19 ~~~~dvFis~~~~d~~~~f~~~l~~~L~~~g~~~f~d~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El~~ 98 (940)
+.+|.+||||+.+|. .+.|...|.+.|+. |.| +.|+.|.++||+.++..+.|.||..|+..
T Consensus 2 ~~~~~lFISh~~~d~----~~~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 2 TAEIRLYITEGEVED----YRVFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCCEEEEECCCCSHH----HHHHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred CceEEEEEecccHhH----HHHHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 357999999999982 33444444444553 333 56788999999999999999999999976
Q ss_pred HH
Q 002299 99 II 100 (940)
Q Consensus 99 ~~ 100 (940)
+.
T Consensus 63 A~ 64 (111)
T 1eiw_A 63 AR 64 (111)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 256
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.35 E-value=0.0028 Score=65.55 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=42.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
.+++.|+|++|+|||+||.+++.. .-..+.|+..-.+ ..+ .. .....+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~e----E~v--------~~------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFG----EPL--------SG------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBS----CSS--------TT------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecch----hhh--------hh------hhcCHHHHHHHHHHHHh
Confidence 356789999999999999999886 1123445543000 000 00 00223344444555555
Q ss_pred CCceEEEEeCCCC
Q 002299 295 CKKVLIVFDDVTH 307 (940)
Q Consensus 295 ~~~~LlVlDdv~~ 307 (940)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 555 999999865
No 257
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.29 E-value=0.00028 Score=67.89 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=64.8
Q ss_pred CCceEEEcCCC-CCCc----cccCccCCCCCccEEeeeCCCCCC----CCCccCCCCCCCCEEEccCCCCccCchhHHHh
Q 002299 793 QALSKLELNNC-SRLE----SFPSSLCMFESLASLKIIDCPRLD----GLPDELGNLKALEELTVEGTAMREVPESLGQL 863 (940)
Q Consensus 793 ~~L~~L~L~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l 863 (940)
+.|+.|+|++| .+.. .+...+..-+.|+.|+|++|.+.+ .+.+.+...+.|++|+|++|.|..- .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~--G---- 114 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE--L---- 114 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH--H----
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH--H----
Confidence 45666666654 3322 223334445677788888777654 2344455667788888888877631 1
Q ss_pred hhccCccccCCCCCCEEeccCCCC--Cc-----ccCCCcCCchhhhhhhccCCcc
Q 002299 864 LESLPSSLYKSKCLQDSYLDDCPN--LH-----RLPDELGSLEALKRLYAEGKCS 911 (940)
Q Consensus 864 ~~~lp~~~~~l~~L~~L~L~~n~~--~~-----~~p~~~~~l~~L~~L~l~~n~~ 911 (940)
...+.+.+..-+.|+.|+|++|.. .+ .+...+..-++|+.|+++.|+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 122233444556688888876532 11 1333455556777777776654
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.23 E-value=0.044 Score=57.04 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=34.8
Q ss_pred hhHHHHHHHhhcC------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 199 CRIKEIELLLRTG------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 199 ~~~~~l~~~l~~~------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
.-.++|.+.+... .....+++|+|.+|+||||++..++..+...-..+.++
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 3445566666432 12457899999999999999999998776543334443
No 259
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.18 E-value=0.0095 Score=59.84 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=26.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.+++|.|.+|+|||||++.++......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57999999999999999999975543333455554
No 260
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.17 E-value=0.0099 Score=72.20 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=37.8
Q ss_pred CccchhhhHHHHHHHhhcC------C-CCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 193 DLVGVECRIKEIELLLRTG------S-AGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~~~------~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.++|.+..++.+...+... + .....+.|+|++|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999888887766432 1 12357899999999999999999987643
No 261
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.10 E-value=0.005 Score=60.79 Aligned_cols=110 Identities=16% Similarity=-0.011 Sum_probs=60.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC--CCCchhhhHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN--VKNFPYIILNFQSKR 292 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~l~~~ 292 (940)
-.++.|+|..|+||||++..++.+...+-..+..+....+.. +. .++...+..... ......++.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---SI----RNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---GC----SSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---HH----HHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 467889999999999999999998766544444443211110 10 011112111100 112233444555554
Q ss_pred hcCCce-EEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCCh
Q 002299 293 FSCKKV-LIVFDDVTH--LKQIEFLIGRLDWFASGSRIIITTRDK 334 (940)
Q Consensus 293 l~~~~~-LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~ 334 (940)
+.+.++ +||+|.+.. .++++.+... . ..|-.||+|.+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L-~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANIL-A--ENGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHH-H--HTTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHH-H--hCCCeEEEEeccc
Confidence 444444 999999854 2444444321 1 1378899999854
No 262
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.07 E-value=0.033 Score=58.64 Aligned_cols=65 Identities=18% Similarity=0.073 Sum_probs=42.4
Q ss_pred hHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHH
Q 002299 200 RIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLST 271 (940)
Q Consensus 200 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 271 (940)
-+..|.+++ .+-..-.++.|.|.+|+||||+|..++.....+-..++|+.. +.....+...+...
T Consensus 54 G~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl------E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 54 GFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL------EMGKKENIKRLIVT 118 (315)
T ss_dssp SCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES------SSCHHHHHHHHHHH
T ss_pred ChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC------CCCHHHHHHHHHHH
Confidence 344555555 333344679999999999999999998765544356677653 34455555555543
No 263
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.06 E-value=0.023 Score=60.57 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 201 IKEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
...|..+|. .+-..-+++.|+|.+|+||||||..++......-..++|+..
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 445556664 332344689999999999999999998766554456777764
No 264
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.02 E-value=0.015 Score=61.70 Aligned_cols=102 Identities=19% Similarity=0.071 Sum_probs=55.9
Q ss_pred HHHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCC-CCC
Q 002299 201 IKEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDD-RNV 278 (940)
Q Consensus 201 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~ 278 (940)
...|...|. .+-..-.++.|+|++|+||||||..++......-..++|++... ..... ..+++.-..... -..
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~----s~~~~-ra~rlgv~~~~l~i~~ 120 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH----ALDPV-YAKNLGVDLKSLLISQ 120 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC----CCCHH-HHHHHTCCGGGCEEEC
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc----ccchH-HHHHcCCchhhhhhhh
Confidence 345666665 33234568999999999999999999987655444567775421 11111 222221000000 001
Q ss_pred CCchhhhHHHHHhhhc-CCceEEEEeCCCC
Q 002299 279 KNFPYIILNFQSKRFS-CKKVLIVFDDVTH 307 (940)
Q Consensus 279 ~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~ 307 (940)
..+.++....+....+ .+.-++|+|.+..
T Consensus 121 ~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 121 PDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp CSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred ccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 2334444455544443 3456899998743
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.02 E-value=0.023 Score=60.82 Aligned_cols=52 Identities=27% Similarity=0.196 Sum_probs=36.9
Q ss_pred hHHHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 200 RIKEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 200 ~~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
-...|..+|. .+-..-.++.|+|.+|+||||||..++......-..++|++.
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3456666664 222334578899999999999999998866544456788764
No 266
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.78 E-value=0.046 Score=56.25 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=34.1
Q ss_pred HHHHHHhh----cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc--cceEEEec
Q 002299 202 KEIELLLR----TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF--EGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~ 251 (940)
.+|...|. .+-.. .++-|+|++|+||||||.+++.....++ ..++|++.
T Consensus 12 ~~LD~~LGg~~~GGl~~-GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 12 PMMNIALSGEITGGMQS-GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp HHHHHHHHSSTTCCBCS-EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHhCCCCCCCCcC-CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 34555565 22222 3689999999999999999988765542 45677764
No 267
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.75 E-value=0.017 Score=60.89 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=43.9
Q ss_pred chhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHh
Q 002299 196 GVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTL 272 (940)
Q Consensus 196 Gr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 272 (940)
|...-...|..++. +-..-.++.|.|.+|+||||+|..++.....+-..++|+.. +.....+..+++...
T Consensus 28 gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl------Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL------EMSAEQLALRALSDL 97 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES------SSCHHHHHHHHHHHH
T ss_pred cccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCHHHHHHHHHHHh
Confidence 33333445555553 32334578999999999999999999866543344556542 345566666665543
No 268
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.72 E-value=0.0057 Score=65.37 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=38.8
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..++|++..++.+...+..+. -+.++|++|+|||++|+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 478999999988887776532 38899999999999999999876544
No 269
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.68 E-value=0.078 Score=58.87 Aligned_cols=67 Identities=18% Similarity=0.042 Sum_probs=43.3
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEecchhhhccCCHHHHHHHHHHHh
Q 002299 199 CRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHNVREAQETGGLAHLRQQLLSTL 272 (940)
Q Consensus 199 ~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 272 (940)
.-...|..++ .+-..-.++.|.|.+|+||||+|..++..+... -..++|+.. +.....+..+++...
T Consensus 185 tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 185 TGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp CSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------SSCHHHHHHHHHHHH
T ss_pred CCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------CCCHHHHHHHHHHHH
Confidence 3344555555 333344678999999999999999999876543 234666643 344556666665443
No 270
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.62 E-value=0.02 Score=55.87 Aligned_cols=44 Identities=30% Similarity=0.320 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHhhcC-CCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 197 VECRIKEIELLLRTG-SAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 197 r~~~~~~l~~~l~~~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
|++.++++.+.+... .....+|+|.|..|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 555667776665542 24457899999999999999999988664
No 271
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.57 E-value=0.017 Score=61.73 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEec
Q 002299 201 IKEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 251 (940)
...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|++.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445556664 222344689999999999999999999866554456778764
No 272
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.50 E-value=0.054 Score=56.87 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=28.0
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
...+++|+|.+|+||||++..++..+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467899999999999999999998776543334444
No 273
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.48 E-value=0.033 Score=56.52 Aligned_cols=36 Identities=28% Similarity=0.199 Sum_probs=25.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh-ccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS-KHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~ 250 (940)
-.+++|.|+.|+|||||++.++.... ..-..++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 35799999999999999999885322 2233445543
No 274
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.45 E-value=0.021 Score=60.88 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=64.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEE-EecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYF-AHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
.+++|.|+.|+||||+.+.++..+.......++ +....+...... . ................+.+...+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~--------~-~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK--------K-CLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS--------S-SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc--------c-cceeeeeeccccCCHHHHHHHHhh
Confidence 489999999999999999998866544333332 221110000000 0 000000000111234457778888
Q ss_pred CCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhhh
Q 002299 295 CKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQVL 337 (940)
Q Consensus 295 ~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~ 337 (940)
..+=+|++|.+.+.+.++.+.... ..|..||+|+.....+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 888899999998877766544331 3466789998876544
No 275
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.43 E-value=0.22 Score=54.24 Aligned_cols=36 Identities=25% Similarity=0.121 Sum_probs=27.9
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
...+|.++|.+|+||||++..++..++.+-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999999998776543333333
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.35 E-value=0.0078 Score=57.55 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|.|.|++|+||||+|+.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 277
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.34 E-value=0.012 Score=63.64 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=35.6
Q ss_pred CccchhhhHHHHHHHhh-------------cCCCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 193 DLVGVECRIKEIELLLR-------------TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 193 ~~vGr~~~~~~l~~~l~-------------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.++|.+..++.+...+. ......+.|.|+|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46888888877776662 1111234588999999999999999998764
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.33 E-value=0.016 Score=57.00 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+++|.+.+........+|+|.|+.|.|||||++.++..+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444444432234457899999999999999999998665
No 279
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.26 E-value=0.24 Score=52.82 Aligned_cols=155 Identities=8% Similarity=-0.055 Sum_probs=95.0
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh-ccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS-KHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKR 292 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 292 (940)
-.++..++|+.|.||++.|..+...+. ..|+....+. .. ...++..+...+.. .-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~--------------------~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQA--------------------MS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHHH--------------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhcC--------------------cC
Confidence 456889999999999999999988654 3443221111 11 12333333322211 11
Q ss_pred hcCCceEEEEeCCCC---hHHHHHHHcccCCCCCCcEEEEEeCC-------hhhhhh-CCCCcEEEcCCCCHHHHHHHHH
Q 002299 293 FSCKKVLIVFDDVTH---LKQIEFLIGRLDWFASGSRIIITTRD-------KQVLSN-CRVDQIYDVKELVDVDALKLFS 361 (940)
Q Consensus 293 l~~~~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iiiTtR~-------~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~ 361 (940)
+.+++=++|+|+++. .+..+.+...+....+++.+|+++-. ..+... ......++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 234556889999865 34556665555544567777776643 223333 2344688999999999998887
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 002299 362 RCAFGEDDPTASYTKLTHEAVKYAKGVPLALKV 394 (940)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (940)
+.+-..+ ..-..+.+..+++.++|.+.++..
T Consensus 153 ~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLN--LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTT--CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhchHHHHHHH
Confidence 7663222 122245677889999998877654
No 280
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.23 E-value=0.091 Score=56.00 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc------cccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK------HFEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~ 251 (940)
..|..+|..+-..-.++.|+|.+|+||||||..++..... .-..++|+..
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~ 164 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT 164 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 3455556433344568999999999999999999886432 2245677764
No 281
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.23 E-value=0.019 Score=67.63 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=77.7
Q ss_pred CCccchhhhHHHHHHHhhcC-----------CCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCC
Q 002299 192 KDLVGVECRIKEIELLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGG 260 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (940)
..+.|.+...++|.+.+... ....+-|.++|++|.|||.+|++++......| +....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~v~~------- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----ISIKG------- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EECCH-------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EEecc-------
Confidence 45677887777776654321 12234578999999999999999999764332 22111
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcCCceEEEEeCCCChH----------------HHHHHHcccCCCCCC
Q 002299 261 LAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSCKKVLIVFDDVTHLK----------------QIEFLIGRLDWFASG 324 (940)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~~~g 324 (940)
..++....+ .....+.+.+...-+..+.+|++|+++... .+..++..+......
T Consensus 545 -----~~l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 545 -----PELLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -----HHHHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred -----chhhccccc-----hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 112211111 112222233333334578999999985320 133444433322222
Q ss_pred c-EEEE-EeCChhh-----hhhCCCCcEEEcCCCCHHHHHHHHHHhh
Q 002299 325 S-RIII-TTRDKQV-----LSNCRVDQIYDVKELVDVDALKLFSRCA 364 (940)
Q Consensus 325 s-~iii-TtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 364 (940)
. -++| ||-.... ......+..+.++.-+.++-.++|..+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2 2333 4433222 2112456788888878888888887665
No 282
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.22 E-value=0.044 Score=53.79 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=24.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999865
No 283
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.19 E-value=0.041 Score=55.43 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc------cccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK------HFEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~ 251 (940)
..|..++..+-..-.+++|+|++|+|||||++.++..... .-..++|+..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 3455555433233458999999999999999999985322 1345677754
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.18 E-value=0.023 Score=57.82 Aligned_cols=112 Identities=9% Similarity=0.022 Sum_probs=60.8
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF 293 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 293 (940)
.-.+++|+|+.|+|||||++.++..+...+.+.+++....-......... + +....... ........+.+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~----~---v~q~~~gl-~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS----I---VNQREVGE-DTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS----E---EEEEEBTT-TBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce----e---eeHHHhCC-CHHHHHHHHHHHH
Confidence 34689999999999999999998866544344444432100000000000 0 00000000 0112344555555
Q ss_pred cCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChhh
Q 002299 294 SCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQV 336 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~ 336 (940)
..++=++++|...+.+......... ..|..|++||.+...
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 5567799999997666554443321 346678888887653
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.15 E-value=0.071 Score=51.89 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.7
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+++|.|+.|+||||+++.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999866
No 286
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.10 E-value=0.044 Score=58.01 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc------ccceEEEec
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH------FEGSYFAHN 251 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~~ 251 (940)
..|..+|..+-..-.++.|+|.+|+||||||..++...... -..++|+..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 34555554322334589999999999999999998865332 245677764
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.04 E-value=0.012 Score=55.84 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=22.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 288
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.02 E-value=0.048 Score=53.18 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=46.5
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccccceEEEec---chhhhc-cCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHN---VREAQE-TGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKR 292 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 292 (940)
+|.|.|++|+||+|.|+.+++++. ...+.. .+..-. ...+....+..+.. +.....+.....+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~~-----G~lvpd~iv~~lv~~~ 71 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYMER-----GELVPDDLIIALIEEV 71 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHH-----TCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHhc-----CCcCCHHHHHHHHHHh
Confidence 577999999999999999998652 222321 111100 11111111122111 1122334556677777
Q ss_pred hcCCceEEEEeCCC-ChHHHHHH
Q 002299 293 FSCKKVLIVFDDVT-HLKQIEFL 314 (940)
Q Consensus 293 l~~~~~LlVlDdv~-~~~~~~~l 314 (940)
+..... +|||+.- +..|.+.+
T Consensus 72 l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 72 FPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp CCSSSC-EEEESCCCSHHHHHHH
T ss_pred hccCCc-eEecCCchhHHHHHHH
Confidence 766554 7899984 45554444
No 289
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.87 E-value=0.029 Score=58.08 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=25.5
Q ss_pred CCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 212 SAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 355678999999999999999999886653
No 290
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.86 E-value=0.014 Score=56.08 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.7
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+.|.|+|++|+||||+|+.+++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.86 E-value=0.015 Score=56.81 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|+|+|+.|+||||+|+.++.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998763
No 292
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.84 E-value=0.081 Score=58.90 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=32.5
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccc-cceEEEe
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF-EGSYFAH 250 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~ 250 (940)
..|.+++ .+-..-.++.|.|.+|+||||+|..++..+.... ..++|+.
T Consensus 191 ~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 191 TELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3444444 2223345799999999999999999998765432 2566664
No 293
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.69 E-value=0.092 Score=54.47 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=24.3
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
...+++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999987653
No 294
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.65 E-value=0.066 Score=56.63 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 202 KEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 202 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..|..+|..+-..-.++.|+|.+|+||||+|..++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555554332344689999999999999999998753
No 295
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.64 E-value=0.32 Score=53.33 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=25.6
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..++|.++|.+|+||||++..++..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999877665
No 296
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.61 E-value=0.14 Score=57.81 Aligned_cols=55 Identities=9% Similarity=-0.060 Sum_probs=38.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhcc-ccceEEEecchhhhccCCHHHHHHHHHHHhh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKH-FEGSYFAHNVREAQETGGLAHLRQQLLSTLL 273 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 273 (940)
..-.++.|.|.+|+||||+|..++.....+ -..++|+.. +....++...++....
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~------E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML------EESVEETAEDLIGLHN 295 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES------SSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec------cCCHHHHHHHHHHHHc
Confidence 344578999999999999999999877654 335666643 3445566666655443
No 297
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.59 E-value=0.032 Score=54.37 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=24.1
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...+|+|.|+.|+||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998775
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.59 E-value=0.032 Score=53.88 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.+|.|.|++|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 299
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.59 E-value=0.03 Score=56.51 Aligned_cols=41 Identities=17% Similarity=0.025 Sum_probs=28.6
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 199 CRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 199 ~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+.++.............|+|.|++|+||||+|+.+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444433333222345689999999999999999998765
No 300
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.57 E-value=0.016 Score=64.88 Aligned_cols=44 Identities=25% Similarity=0.193 Sum_probs=36.6
Q ss_pred CCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 192 KDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+.++|++..++.+...+..+ +-|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 47899999998887776543 248899999999999999999865
No 301
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.55 E-value=0.031 Score=58.74 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=32.7
Q ss_pred chhhhHHHHHHHhhc--CCCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 196 GVECRIKEIELLLRT--GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 196 Gr~~~~~~l~~~l~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
+.+...+++.+.+.. ..+....|.|+|++|+||||+++.++..+...|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444555444432 233456789999999999999999998765444
No 302
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.54 E-value=0.03 Score=58.66 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=28.5
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
++.+||+|+|-|||||||.|..++.-+...-..+.-++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46789999999999999999988876655433344443
No 303
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.49 E-value=0.0095 Score=71.42 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=39.1
Q ss_pred CCCccchhhhHHHHHHHhhcC-----------CCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 191 NKDLVGVECRIKEIELLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
-..++|.+...+.+.+.+... -...+.+.++|++|+|||+||+.++......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356788888888887766421 11234588999999999999999999775443
No 304
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.46 E-value=0.021 Score=53.82 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...+|+|.|+.|+||||+|+.++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998764
No 305
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.46 E-value=0.17 Score=55.87 Aligned_cols=50 Identities=18% Similarity=0.069 Sum_probs=34.2
Q ss_pred hHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 200 RIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 200 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
-+..|..++. +-..-.++.|.|.+|+||||+|..++.....+-..++|+.
T Consensus 183 G~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 183 GFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3444555552 3334457899999999999999999987654433456654
No 306
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.45 E-value=0.095 Score=57.34 Aligned_cols=29 Identities=28% Similarity=0.691 Sum_probs=23.8
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccccc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHFEG 245 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~ 245 (940)
.++|+|..|+|||||+..++.....++..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~ 181 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGG 181 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence 48899999999999999999866554433
No 307
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.44 E-value=0.018 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 43
No 308
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.41 E-value=0.061 Score=58.66 Aligned_cols=36 Identities=25% Similarity=0.130 Sum_probs=28.0
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
..++|.++|.+|+||||++..++..++.+-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 367999999999999999999998776543334443
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.38 E-value=0.037 Score=51.72 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=24.8
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..++++|.|..|+|||||+..++..++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999877654
No 310
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.36 E-value=0.015 Score=55.56 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=23.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
|.|.|+|+.|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4578999999999999999988654444
No 311
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.36 E-value=0.018 Score=60.75 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=23.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
..++|+|.+|+|||||++.+++.+.+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 4689999999999999999988665433
No 312
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.33 E-value=0.038 Score=53.12 Aligned_cols=29 Identities=31% Similarity=0.312 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
...+|.|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34679999999999999999999877543
No 313
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.30 E-value=0.11 Score=53.86 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=28.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
..+++++|.+|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 578999999999999999999987765433444443
No 314
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.29 E-value=0.0043 Score=59.62 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=65.6
Q ss_pred cCCCCCccEEeeeCC-CCCC----CCCccCCCCCCCCEEEccCCCCccCchhHHHhhhccCccccCCCCCCEEeccCCCC
Q 002299 813 LCMFESLASLKIIDC-PRLD----GLPDELGNLKALEELTVEGTAMREVPESLGQLLESLPSSLYKSKCLQDSYLDDCPN 887 (940)
Q Consensus 813 ~~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~~lp~~~~~l~~L~~L~L~~n~~ 887 (940)
+..-+.|+.|+|++| .+.. .+-+.+...+.|+.|+|++|.+..-- ...+.+.+..-+.|+.|+|++|.+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g------a~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE------ARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH------HTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH------HHHHHHHHhcCCccCeEecCCCcC
Confidence 345578999999986 5543 24456778899999999999987321 223334455568899999999998
Q ss_pred Ccc----cCCCcCCchhhhhhhccCC
Q 002299 888 LHR----LPDELGSLEALKRLYAEGK 909 (940)
Q Consensus 888 ~~~----~p~~~~~l~~L~~L~l~~n 909 (940)
... +-..+..-+.|+.|+|++|
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCC
Confidence 642 3445666678999999865
No 315
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.28 E-value=0.024 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=20.5
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.25 E-value=0.03 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+|.|.|++|+||||+|+.++.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999876
No 317
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.24 E-value=0.019 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998653
No 318
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.20 E-value=0.023 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35799999999999999999988654
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.18 E-value=0.02 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.++|.|.|++|+||||+|+.+++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999875
No 320
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.17 E-value=0.025 Score=60.78 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=34.6
Q ss_pred CCCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 190 DNKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.-..++|.+..++.+........ ..-+.|+|++|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34568999886655443332211 22388999999999999999998654
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.16 E-value=0.022 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
No 322
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.14 E-value=0.044 Score=52.50 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 197 VECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 197 r~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
...-+..+..++..- .....+.|+|++|+||||+|.++++.+..
T Consensus 41 ~~~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 41 FITFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334466677776532 22346899999999999999999987643
No 323
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.01 E-value=0.029 Score=56.93 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=22.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.++.|.|++|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998653
No 324
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.01 E-value=0.028 Score=54.33 Aligned_cols=24 Identities=38% Similarity=0.282 Sum_probs=21.4
Q ss_pred eeEEEEEecCCchhhHHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
..+++|.|+.|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999874
No 325
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.99 E-value=0.03 Score=54.06 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.2
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.+|.|.|++|+||||+|+.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999997753
No 326
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.97 E-value=0.024 Score=55.33 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+|+|.|+.|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.97 E-value=0.024 Score=54.43 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.7
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+|+|.|++|+||||+|+.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998763
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.88 E-value=0.033 Score=53.98 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=22.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+|+|.|++|+||||+|+.+++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999865
No 329
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.87 E-value=0.03 Score=54.75 Aligned_cols=24 Identities=42% Similarity=0.691 Sum_probs=21.9
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.81 E-value=0.025 Score=54.12 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=18.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988653
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.79 E-value=0.055 Score=53.18 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
.+|+|.|++|+||||+|+.++.++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5789999999999999999999775543
No 332
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.79 E-value=0.029 Score=54.00 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=24.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcccc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFE 244 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 244 (940)
++++|.|+.|+|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 46899999999999999999987654443
No 333
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.75 E-value=0.049 Score=52.45 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=24.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.+++|.|+.|+||||+++.++.. ....+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 47899999999999999999862 33445554
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.74 E-value=0.058 Score=53.14 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=24.4
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..+|+|.|+.|+||||+|+.+++++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999987544
No 335
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.73 E-value=0.1 Score=56.27 Aligned_cols=109 Identities=11% Similarity=0.068 Sum_probs=60.5
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceE-EEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSY-FAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRF 293 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 293 (940)
-.+++|+|+.|+||||+++.++..+.....+.+ ++.... ..... .. ..-+.... ...........+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~----e~~~~---~~-~~~v~Q~~-~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI----EYVFK---HK-KSIVNQRE-VGEDTKSFADALRAAL 206 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC----CSCCC---CS-SSEEEEEE-BTTTBSCSHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH----hhhhc---cC-ceEEEeee-cCCCHHHHHHHHHHHh
Confidence 457999999999999999999986654323444 332110 00000 00 00000000 0001123345666777
Q ss_pred cCCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChh
Q 002299 294 SCKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQ 335 (940)
Q Consensus 294 ~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 335 (940)
...+=++++|.+.+.+.+....... ..|..|+.|+....
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 7777899999998776655443332 34666777777654
No 336
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.70 E-value=0.093 Score=46.79 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=14.5
Q ss_pred CCcEEEecCCCCCcccccccCCCCCCcEEEecCC
Q 002299 738 NLRSIDLLNCTRLEYIASSIFTLKSLESIRISKC 771 (940)
Q Consensus 738 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 771 (940)
+|+.|+|++|.+....+..|..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444433333333344444444444443
No 337
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.68 E-value=0.047 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.4
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+++|.|+.|+||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999998865
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.66 E-value=0.03 Score=53.01 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|.|.|+.|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998763
No 339
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.64 E-value=0.041 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
...+|+|.|+.|+||||+|+.+++++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999864
No 340
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.63 E-value=0.04 Score=53.31 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+|+|.|++|+||||+|+.++.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 341
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.63 E-value=0.1 Score=55.92 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=29.7
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
++...+........+|+|+|.+|+|||||+..++..+...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3444443334567889999999999999999998866443
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.62 E-value=0.038 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|+|.|++|+||||+|+.+++++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998763
No 343
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.58 E-value=0.03 Score=54.96 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+++|+|+.|+|||||++.++....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998654
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.56 E-value=0.068 Score=55.90 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=33.0
Q ss_pred ccchhhhHHHHHHHhhcC--CCCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 194 LVGVECRIKEIELLLRTG--SAGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 194 ~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
++|-...+..+...+... ...+.+|+|.|..|+||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555555554433332 34567899999999999999999987664
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.53 E-value=0.042 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..|+|.|++|+||||+|+.+++++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999865
No 346
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.53 E-value=0.043 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
...|+|+|+.|+||||+|+.++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999986
No 347
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.52 E-value=0.049 Score=59.49 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=35.9
Q ss_pred CCccchhhhHHHHHHHhhcC------------CCCeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 192 KDLVGVECRIKEIELLLRTG------------SAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 192 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
..++|.+...+.+...+... ....+-+.++|++|+||||+|+.++......|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 35777777776665544210 01234588999999999999999999775433
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.50 E-value=0.042 Score=55.81 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=24.0
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
....+|+|.|+.|+||||+|+.++..+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999998654
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.50 E-value=0.042 Score=51.68 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.6
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 350
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.48 E-value=0.1 Score=54.82 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=25.3
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
....+++|+|+.|+||||+++.++..++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346799999999999999999999866544
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.47 E-value=0.051 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|+|.|++|+||||+|+.++.++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998763
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.40 E-value=0.042 Score=54.50 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.7
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...|.|.|++|+||||+|+.++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998763
No 353
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.37 E-value=0.068 Score=53.96 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=28.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 357999999999999999998876544444566665
No 354
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.30 E-value=0.036 Score=54.26 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.++|+|+|++|+||||+++.++....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999998763
No 355
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.29 E-value=0.05 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHH
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
....+|+|.|+.|+||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999874
No 356
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.28 E-value=0.089 Score=52.40 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc------cccceEEEec
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK------HFEGSYFAHN 251 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~ 251 (940)
.+...+..+-..-.+++|+|+.|+|||||++.++..... .-...+|+..
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~ 67 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 67 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEEC
Confidence 444444322233468999999999999999999875432 1234666653
No 357
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.28 E-value=0.044 Score=52.74 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.4
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346799999999999999999998654
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.25 E-value=0.049 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.5
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+|+|.|++|+||||+|+.++.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999865
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.19 E-value=0.052 Score=53.36 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=24.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..+|+|.|+.|+||||+|+.+++++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999876543
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.13 E-value=0.052 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.1
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 361
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.07 E-value=0.051 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+|+|+|+.|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 362
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.04 E-value=0.086 Score=54.89 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=27.2
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
...+++|+|+.|+||||+++.++..+... .+.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEE
Confidence 45689999999999999999999866544 334444
No 363
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.01 E-value=0.051 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.3
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.+|+|.|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 364
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.95 E-value=0.066 Score=52.60 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...+|+|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998654
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.94 E-value=0.056 Score=52.25 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.0
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998774
No 366
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.94 E-value=0.05 Score=53.15 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+++|.|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999998764
No 367
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.94 E-value=0.15 Score=65.64 Aligned_cols=95 Identities=17% Similarity=0.077 Sum_probs=54.8
Q ss_pred HHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCC--C--
Q 002299 203 EIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDR--N-- 277 (940)
Q Consensus 203 ~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~-- 277 (940)
+|..+|. .+-...+.|.|+|++|+|||+||.+++.....+=..++|+.... ...... .+ ....+- -
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~----~~~~l~-a~----~~G~dl~~l~v 1484 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH----ALDPIY-AR----KLGVDIDNLLC 1484 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS----CCCHHH-HH----HTTCCTTTCEE
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc----ccCHHH-HH----HcCCCchhcee
Confidence 4555664 22234568999999999999999999987666545667775421 111111 11 111000 0
Q ss_pred -CCCchhhhHHHHHhhhc-CCceEEEEeCCC
Q 002299 278 -VKNFPYIILNFQSKRFS-CKKVLIVFDDVT 306 (940)
Q Consensus 278 -~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 306 (940)
.....++..+.+++..+ .+.-+||+|.+.
T Consensus 1485 ~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1485 SQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 12233344444444432 466799999984
No 368
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.91 E-value=0.057 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.7
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+++|.|+.|+||||+++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 369
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.91 E-value=0.27 Score=53.66 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=26.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhc-cccceEEE
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSK-HFEGSYFA 249 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~ 249 (940)
..++|.|.+|+|||+|+.++++.+.. +-+.++|+
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 45899999999999999999987643 33445554
No 370
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.88 E-value=0.061 Score=51.79 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
...+|+|.|+.|+||||+|+.++..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998863
No 371
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.88 E-value=0.24 Score=54.59 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.9
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
...+++|+|..|+|||||++.++..++.. .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35689999999999999999999876543 3445543
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.88 E-value=0.05 Score=54.04 Aligned_cols=26 Identities=35% Similarity=0.207 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 373
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.87 E-value=0.064 Score=50.99 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.4
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998654
No 374
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.85 E-value=0.14 Score=53.16 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=27.0
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
...+++|+|+.|+||||+++.++..+... .+.+++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 35689999999999999999999876543 333444
No 375
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.82 E-value=0.14 Score=50.88 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.+.+...+.. .....|+|+|.+|+|||||+..++.....
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3444444432 34678999999999999999999886433
No 376
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.82 E-value=0.07 Score=55.20 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
...+|.|.|++|+||||+|+.++.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 377
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.82 E-value=0.11 Score=51.26 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=30.3
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 199 CRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 199 ~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
...+.+...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344444444432 356789999999999999999998875444
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.81 E-value=0.052 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.3
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
...|.|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999865
No 379
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.74 E-value=0.064 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHH
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
...+|+|.|+.|+||||+|+.++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998864
No 380
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.69 E-value=0.057 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+++|.|+.|+||||+++.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998765
No 381
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.68 E-value=0.051 Score=54.77 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|+|+|+.|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999998764
No 382
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.64 E-value=0.091 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...+|.|.|++|+||||+|+.++.++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999998753
No 383
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.61 E-value=0.05 Score=51.43 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.6
Q ss_pred eeEEEEEecCCchhhHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAI 235 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~ 235 (940)
-.+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 357999999999999999964
No 384
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.60 E-value=0.065 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 385
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.59 E-value=0.13 Score=50.27 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=22.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347889999999999999999876554
No 386
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.58 E-value=0.22 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.138 Sum_probs=22.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
..++|.|.+|+|||+|+.++++.+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 45899999999999999999987654
No 387
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=92.54 E-value=0.7 Score=42.51 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=60.3
Q ss_pred chHHHHHHHHhCCCcEEecC-CCC----C----CCcchHHHHHHHHhcceEEEEecCCccchhhhHHHHHHHHHhhccCC
Q 002299 37 FTSHLFSALSKKHIETFIDD-QLI----R----GDEISQSLLDAIEASTISVIIFSEGYASSKWCLDELLKIIDCKNNSG 107 (940)
Q Consensus 37 f~~~l~~~L~~~g~~~f~d~-~~~----~----g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El~~~~~~~~~~~ 107 (940)
...-|...-....+-.|.|. +.. - -+.|.+.+.+.|..|+.+|+++|++...|.|-..|+..++. +.+
T Consensus 33 yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~ 109 (189)
T 3hyn_A 33 YYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKG 109 (189)
T ss_dssp HHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTC
T ss_pred HHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcC
Confidence 44455555555556557775 442 2 24588899999999999999999999999999999888762 234
Q ss_pred CEEEEEEcccC-Ccchhhcccch
Q 002299 108 QMVIPVFYRVD-PSHVRKQIGSF 129 (940)
Q Consensus 108 ~~v~pvf~~v~-p~~v~~~~~~~ 129 (940)
..|+-|.-+-+ .++++...|++
T Consensus 110 ~PII~Vy~~~~~~~~i~~~~g~~ 132 (189)
T 3hyn_A 110 LPVIVIYPDYDKKSDIVDSNGNF 132 (189)
T ss_dssp CCEEEEETTCCSGGGTBCTTSCB
T ss_pred CcEEEEECCccccchhhhccccc
Confidence 46666654432 23444444444
No 388
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.53 E-value=0.078 Score=61.45 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=39.4
Q ss_pred CCCccchhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 191 NKDLVGVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 191 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
...++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 457899998888888877654 368999999999999999999865433
No 389
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.53 E-value=0.062 Score=52.56 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 390
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.48 E-value=0.26 Score=54.62 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEEecCCchhhHHHHHHHHH
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.|+|+|.+|+|||||...+...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3889999999999999998874
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.46 E-value=0.059 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.5
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987753
No 392
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.44 E-value=0.072 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.3
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhc
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.|+|.|+.|+||||+|+.+++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.42 E-value=0.082 Score=50.30 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|+|.|+.|+||||+++.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.41 E-value=0.066 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|+|.|+.|+||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998763
No 395
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.31 E-value=0.87 Score=46.70 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=31.6
Q ss_pred cchHHHHHHHHhcceEEEEecCCccchhhhHHHHHHHHHhhccCCCEEEEEEcccC
Q 002299 63 EISQSLLDAIEASTISVIIFSEGYASSKWCLDELLKIIDCKNNSGQMVIPVFYRVD 118 (940)
Q Consensus 63 ~~~~~l~~ai~~s~~~i~v~S~~y~~s~~cl~El~~~~~~~~~~~~~v~pvf~~v~ 118 (940)
....++.+.++++.+.|.|+.-.-..+..+ .++.+.+ ++..++-|+-+.|
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-----~~kp~ilVlNK~D 61 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-----KNKPRIMLLNKAD 61 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-----SSSCEEEEEECGG
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-----CCCCEEEEEECcc
Confidence 355688899999999999998765555554 2344443 2334455554554
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.31 E-value=0.066 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 397
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.30 E-value=0.13 Score=54.45 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=56.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhcC
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFSC 295 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (940)
.+++|+|..|.|||||++.++..+.. -.+.+.+....+.... ... .... +.. .........+...+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~----~~i~-~~~-----ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHK----NYTQ-LFF-----GGNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCS----SEEE-EEC-----BTTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cch----hEEE-EEe-----CCChhHHHHHHHHhhh
Confidence 36999999999999999998875433 3455555542211000 000 0000 000 0112334455566777
Q ss_pred CceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCChh
Q 002299 296 KKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDKQ 335 (940)
Q Consensus 296 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 335 (940)
++=++++|.+...+.++.+. .+. ..+..+|+||....
T Consensus 240 ~p~ilildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFYN-VLC--SGHKGTLTTLHAGS 276 (330)
T ss_dssp CCSEEEECCCCSTHHHHHHH-HHH--TTCCCEEEEEECSS
T ss_pred CCCEEEEcCCChHHHHHHHH-HHh--cCCCEEEEEEcccH
Confidence 78899999998755554433 222 11223666666543
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.30 E-value=0.069 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 399
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.28 E-value=0.059 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999987653
No 400
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.19 E-value=0.078 Score=55.61 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.6
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.18 E-value=0.2 Score=53.32 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=27.1
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
...+++|+|+.|+||||+++.++..+... .+.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 35689999999999999999999876543 333443
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.11 E-value=0.082 Score=52.40 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|+|.|++|+||||+|+.++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998763
No 403
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.07 E-value=0.13 Score=53.99 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=28.6
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
...++|+|+|-||+||||+|..++..+..+-..+..++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35678888899999999999999987765533444444
No 404
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.01 E-value=0.12 Score=56.77 Aligned_cols=36 Identities=25% Similarity=0.174 Sum_probs=27.3
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
..++|+|+|.+|+||||+|..++...+.+-..+.++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 356899999999999999999998765442234444
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.00 E-value=0.093 Score=51.51 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
..+|.|.|+.|+||||+|+.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.98 E-value=0.09 Score=54.25 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.0
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHH
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
....+|+|.|+.|+||||+|+.++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 407
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.95 E-value=0.14 Score=52.35 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=27.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
++|+|.|-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999987765533445444
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.91 E-value=0.094 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...|.|.|+.|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998763
No 409
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.91 E-value=0.091 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.0
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+|+|.|+.|+||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998663
No 410
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.89 E-value=0.078 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=22.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+|.|+|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999865
No 411
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.88 E-value=0.15 Score=51.95 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.8
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999998766
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.87 E-value=0.058 Score=56.36 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.3
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..+|.|.|+.|+||||||.++++++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3589999999999999999999865
No 413
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.85 E-value=0.1 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
...+|+|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 414
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.83 E-value=0.15 Score=48.00 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.7
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987653
No 415
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.77 E-value=0.16 Score=51.13 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..-+..++.........+.|+|++|.|||.+|.++++.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 445677776542334568999999999999999999853
No 416
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.76 E-value=0.15 Score=52.85 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=27.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.++|+|.|-||+||||+|..++..+..+-..+..++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999987765422344443
No 417
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.75 E-value=0.11 Score=54.42 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
....+|+|.|..|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3457899999999999999999988654
No 418
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.72 E-value=0.073 Score=55.14 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=20.5
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+..+|+|.|..|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 419
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.67 E-value=0.33 Score=53.20 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999988754
No 420
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.66 E-value=0.1 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999866
No 421
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.65 E-value=0.086 Score=51.60 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
-.+++|.|+.|+|||||++.++...
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998865
No 422
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.63 E-value=0.18 Score=46.70 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.-.+++|.|+-|.|||||++.++...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34589999999999999999999866
No 423
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.62 E-value=0.092 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+|+|.|+.|+||||+++.+++++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999865
No 424
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.60 E-value=0.1 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.0
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 425
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.53 E-value=0.31 Score=53.43 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=33.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhc-cccceEEEecchhhhccCCHHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSK-HFEGSYFAHNVREAQETGGLAHLRQQLLS 270 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 270 (940)
..++|.|..|+|||+|+.++++.+.. +-+.++|+- +.+. .....++.+.+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGER--~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGER--TREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESCC--SHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-cccC--cHHHHHHHHhhhc
Confidence 34899999999999999999987643 345556653 3221 1234455555543
No 426
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.52 E-value=0.081 Score=49.77 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.+++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886654
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.51 E-value=0.17 Score=54.14 Aligned_cols=29 Identities=24% Similarity=0.078 Sum_probs=24.1
Q ss_pred CCCCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 211 GSAGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 211 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+-....+++|+|+.|.|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33445689999999999999999999754
No 428
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.47 E-value=0.19 Score=53.50 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=33.5
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhcc--c----cceEEEec
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKH--F----EGSYFAHN 251 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--f----~~~~~~~~ 251 (940)
.|..+|..+-..-.++.|+|+.|+|||||+..++...... . ..++|++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4444554333445789999999999999999999865322 2 23477764
No 429
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.47 E-value=0.17 Score=48.26 Aligned_cols=26 Identities=23% Similarity=-0.125 Sum_probs=21.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.++.|+|+.|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999888876543
No 430
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.47 E-value=0.17 Score=52.47 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=27.3
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
...+++|+|.+|+||||++..++..+...-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 346899999999999999999998766543334443
No 431
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.45 E-value=0.091 Score=54.10 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 578999999999999999999854
No 432
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.44 E-value=0.11 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.8
Q ss_pred eeEEEEEecCCchhhHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 433
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.41 E-value=0.27 Score=62.59 Aligned_cols=101 Identities=18% Similarity=0.107 Sum_probs=56.7
Q ss_pred hhhHHHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCC
Q 002299 198 ECRIKEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDR 276 (940)
Q Consensus 198 ~~~~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 276 (940)
..-..+|..++. .+-..-.++.|.|.+|+||||||..++.....+-..++|+..- .....+. ...+....
T Consensus 714 ~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E------es~~ql~---A~~lGvd~ 784 (1706)
T 3cmw_A 714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE------HALDPIY---ARKLGVDI 784 (1706)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT------SCCCHHH---HHHTTCCG
T ss_pred ccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc------chHHHHH---HHHcCCCh
Confidence 333456666664 2223346799999999999999999998766544456776532 1112222 11111100
Q ss_pred C-----CCCchhhhHHHHHhhh-cCCceEEEEeCCCC
Q 002299 277 N-----VKNFPYIILNFQSKRF-SCKKVLIVFDDVTH 307 (940)
Q Consensus 277 ~-----~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 307 (940)
. ...+.++..+.+++.. ..+.-+||+|.+..
T Consensus 785 ~~L~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 785 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred hheEEecCCcHHHHHHHHHHHHHccCCCEEEEechhh
Confidence 0 1223444444444332 24566999999853
No 434
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.40 E-value=0.083 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.+++|+|+.|+|||||++.++...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 569999999999999999998855
No 435
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.33 E-value=0.13 Score=51.88 Aligned_cols=36 Identities=28% Similarity=0.191 Sum_probs=26.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHh-hccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKM-SKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~-~~~f~~~~~~~ 250 (940)
-.++.|.|.+|+|||++|..++... .+.-..++|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3578999999999999999987643 33334455554
No 436
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.31 E-value=0.11 Score=53.43 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
..++|.|.|+.|+||||||..+++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999999864
No 437
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.28 E-value=0.27 Score=54.74 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.1
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..++|+|+|.+|+||||++..++..+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999876654
No 438
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.27 E-value=0.17 Score=52.77 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=27.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhcccc-ceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFE-GSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~ 250 (940)
-.+++|.|.+|+|||||++.++..+..... .++|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 357999999999999999999986654433 455554
No 439
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.19 E-value=0.59 Score=53.01 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 203 EIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 203 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
.+...|..+-..-.+++|.|..|+|||||++.++......-..++++
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 34444433223345799999999999999999998654432223454
No 440
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.14 E-value=0.21 Score=52.20 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=24.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
....+|+|.|..|+|||||++.++..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999988664
No 441
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.14 E-value=0.1 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.4
Q ss_pred EEEEEecCCchhhHHHHHHHHHhh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999998654
No 442
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.06 E-value=0.11 Score=51.11 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
-.+++|+|+.|+|||||++.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35799999999999999999988654
No 443
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.92 E-value=0.51 Score=45.63 Aligned_cols=110 Identities=12% Similarity=-0.042 Sum_probs=53.6
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
-.+..++|..|.||||.|...+.+...+-..++.+..... ...+...+...+.... .........+ +.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~--~a~~~~~~~~----~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSEEDVVSHNGLKV--KAVPVSASKD----IFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------C--CEEECSSGGG----GGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchHHHHHhhcCCee--EEeecCCHHH----HHHHHh
Confidence 4678899999999999999998877655444444432111 1112222222221111 0001111111 222222
Q ss_pred CCceEEEEeCCCC--hHHHHHHHcccCCCCCCcEEEEEeCChh
Q 002299 295 CKKVLIVFDDVTH--LKQIEFLIGRLDWFASGSRIIITTRDKQ 335 (940)
Q Consensus 295 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 335 (940)
++--+|++|.+.- .++++.+... . ..|-.||+|.++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l-~--~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVL-A--NRGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHH-H--HTTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHHH-h--hCCCEEEEEecccc
Confidence 3334999999843 3445443321 1 23778999999643
No 444
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.86 E-value=0.32 Score=51.69 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=25.1
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
.+..+|+|+|.+|+||||++..++......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999998765443
No 445
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.82 E-value=0.1 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhhHHHHHHHHHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
+.|.|.|+.|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998754
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.66 E-value=0.21 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.++.|+|.+|+||||||..++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999987554
No 447
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.61 E-value=0.095 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=15.9
Q ss_pred eEEEEEecCCchhhHHHHHHH-HHh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIF-TKM 239 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~-~~~ 239 (940)
.+++|+|+.|+|||||++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 579999999999999999998 654
No 448
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.59 E-value=0.19 Score=56.06 Aligned_cols=28 Identities=4% Similarity=0.023 Sum_probs=24.6
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
...+|.+.|+.|+||||+|+++++++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3467999999999999999999998864
No 449
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.55 E-value=0.5 Score=47.90 Aligned_cols=30 Identities=7% Similarity=0.004 Sum_probs=22.8
Q ss_pred cchHHHHHHHHhcceEEEEecCCccchhhh
Q 002299 63 EISQSLLDAIEASTISVIIFSEGYASSKWC 92 (940)
Q Consensus 63 ~~~~~l~~ai~~s~~~i~v~S~~y~~s~~c 92 (940)
....++.+.++.+.+.|.|++-+-..+..+
T Consensus 10 ka~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 10 KAKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp CTTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 345688999999999999998765444443
No 450
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.37 E-value=1.1 Score=44.62 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=17.3
Q ss_pred eEEEEEecCCchhhHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIF 236 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~ 236 (940)
+.+.|.|..|.||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 468999999999998766554
No 451
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.36 E-value=0.17 Score=50.68 Aligned_cols=27 Identities=26% Similarity=0.312 Sum_probs=23.5
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHh
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
....+|+|.|+.|+||||+++.++.++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998865
No 452
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.07 E-value=0.46 Score=45.77 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=26.2
Q ss_pred EEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
.|+|-|.-|+||||.++.+++.+..+.-.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887654444443
No 453
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.03 E-value=0.14 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.143 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+++|.|+.|.|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998864
No 454
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.03 E-value=0.18 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.5
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 455
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.98 E-value=0.57 Score=60.53 Aligned_cols=104 Identities=17% Similarity=0.119 Sum_probs=60.2
Q ss_pred ccchhhhHHHHHHHhh-cCCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHh
Q 002299 194 LVGVECRIKEIELLLR-TGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTL 272 (940)
Q Consensus 194 ~vGr~~~~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 272 (940)
..+...-...|..+|. .+-..-.++.|+|++|+||||||..++......-..++|++... ....+. ...+
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~------s~~~~~---a~~l 431 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH------ALDPIY---ARKL 431 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS------CCCHHH---HHHT
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC------CHHHHH---HHHc
Confidence 3344444566777775 22234568999999999999999999987765545677775421 111221 1122
Q ss_pred hCCCC-----CCCchhhhHHHHHhhh-cCCceEEEEeCCC
Q 002299 273 LDDRN-----VKNFPYIILNFQSKRF-SCKKVLIVFDDVT 306 (940)
Q Consensus 273 ~~~~~-----~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 306 (940)
..... ...+.++..+.++... ..+.-+||+|.+.
T Consensus 432 Gvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 432 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 11111 2234445555554333 2455699999873
No 456
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.96 E-value=0.16 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=22.0
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHH
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.. .+++|.|+.|+|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999863
No 457
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.92 E-value=0.25 Score=47.99 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=26.6
Q ss_pred eEEEEE-ecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 216 CKLGIW-GIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 216 ~vv~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
++|+|+ +-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 68999999999999987766434455554
No 458
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.88 E-value=0.17 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 459
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.85 E-value=0.19 Score=48.79 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=23.1
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhh
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
.+|+|.|+.|+||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999874
No 460
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.81 E-value=0.29 Score=53.19 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=27.7
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEE
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFA 249 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 249 (940)
...+++++|.+|+||||++..++..+..+-..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 356899999999999999999998776553333433
No 461
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.78 E-value=0.18 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999873
No 462
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.76 E-value=0.2 Score=49.77 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
...+|+|.|+.|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3467999999999999999999998765
No 463
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.66 E-value=0.2 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhh
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMS 240 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 240 (940)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 464
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.65 E-value=0.29 Score=55.23 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=25.4
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccc
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHF 243 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 243 (940)
...+|.++|++|.||||+|+++++.+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998775444
No 465
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.62 E-value=0.47 Score=50.21 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
....+++|+|.+|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45578999999999999999999875543
No 466
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.57 E-value=0.32 Score=52.66 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc------cccceEEEec
Q 002299 201 IKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK------HFEGSYFAHN 251 (940)
Q Consensus 201 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~ 251 (940)
...|..+|..+-..-.++.|+|++|+|||||+..++-.... .-..++|+..
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 34555556433233468999999999999999987643321 2234677754
No 467
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.56 E-value=0.27 Score=49.65 Aligned_cols=33 Identities=33% Similarity=0.654 Sum_probs=25.5
Q ss_pred EEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 218 LGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 218 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
|+|.|-||+||||+|..++..+..+-..+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999998766543444444
No 468
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.45 E-value=0.15 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=20.1
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.+++|+|+.|+|||||++.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 469
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.36 E-value=0.32 Score=47.29 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=24.9
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcccc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKHFE 244 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 244 (940)
..|+|-|.-|+||||+++.+++++...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998865554
No 470
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.31 E-value=0.16 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=20.2
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.+++|+|+.|+|||||++.++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999875
No 471
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.29 E-value=0.22 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
+.|+|.|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4588999999999999999886
No 472
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.27 E-value=0.22 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.9
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 473
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.17 E-value=0.31 Score=55.11 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.4
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
-.+++|+|+.|+|||||++.++..+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 4679999999999999999999987543
No 474
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.03 E-value=0.47 Score=50.49 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=28.1
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
...+++.+.|.||+||||+|..++..+...-..+..++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 44567778899999999999999987766533344443
No 475
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.93 E-value=0.68 Score=45.23 Aligned_cols=108 Identities=11% Similarity=-0.025 Sum_probs=53.4
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCCCCCchhhhHHHHHhhhc
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRNVKNFPYIILNFQSKRFS 294 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (940)
..+..++|.-|.||||-+...+++...+-..++.+.-.. ....+ ..+...+..... ........++.+.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~--D~Ryg-~~i~sr~G~~~~--a~~i~~~~di~~~~----- 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK--DTRYS-SSFCTHDRNTME--ALPACLLRDVAQEA----- 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT--CCCC------------CE--EEEESSGGGGHHHH-----
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC--Cccch-HHHHhhcCCeeE--EEecCCHHHHHHHh-----
Confidence 357889999999999988888877655433343333211 12233 333333311110 00011122233322
Q ss_pred CCceEEEEeCCCChHHHHHHHcccCCCCCCcEEEEEeCCh
Q 002299 295 CKKVLIVFDDVTHLKQIEFLIGRLDWFASGSRIIITTRDK 334 (940)
Q Consensus 295 ~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 334 (940)
++--+|++|.+.-...+.++...+. ..|-.||+|.++.
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALDG 126 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCSB
T ss_pred ccCCEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEeccc
Confidence 2233999999743222444433332 2577899999983
No 476
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.91 E-value=0.4 Score=50.80 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=29.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHHHhh--ccccceEEEe
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFTKMS--KHFEGSYFAH 250 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 250 (940)
...+++.+.|.||+||||+|..++..+. ..-..+..++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3467899999999999999999998777 4433444444
No 477
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.86 E-value=0.37 Score=51.98 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCeeEEEEEe-cCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 213 AGVCKLGIWG-IGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 213 ~~~~vv~I~G-~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
...++|+|+| -||+||||+|..++..+..+-..+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4567888885 9999999999999987766534455555
No 478
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.82 E-value=0.2 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.9
Q ss_pred eeEEEEEecCCchhhHHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999873
No 479
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.71 E-value=0.18 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+++|+|+.|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 480
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.62 E-value=0.24 Score=48.71 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEecCCchhhHHHHHHHHHh
Q 002299 217 KLGIWGIGGIGKTTIAGAIFTKM 239 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~~~ 239 (940)
.++|.|++|+||||+|+.+++++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998865
No 481
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.61 E-value=0.18 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=20.1
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.+++|+|+.|+|||||++.++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999875
No 482
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.61 E-value=0.33 Score=51.20 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=27.5
Q ss_pred eeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
.+++...|.||+||||+|..++..+.++-..+..++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 466778899999999999999987766633444444
No 483
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.60 E-value=0.22 Score=54.03 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHH
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
....+++|+|..|+|||||.+.++.
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3456899999999999999999986
No 484
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.56 E-value=0.49 Score=53.61 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=30.6
Q ss_pred chhhhHHHHHHHhhcCCCCeeEEEEEecCCchhhHHHHHHHHHhhc
Q 002299 196 GVECRIKEIELLLRTGSAGVCKLGIWGIGGIGKTTIAGAIFTKMSK 241 (940)
Q Consensus 196 Gr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 241 (940)
.|..-.+.+.+..........+|.+.|++|+||||+|+.+..++..
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3333334444444211233567999999999999999999987643
No 485
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.56 E-value=0.22 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+++|.|+.|+|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998873
No 486
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.51 E-value=0.46 Score=46.46 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=24.0
Q ss_pred eEEEEEecCCchhhHHHHHHHHHhhcc
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTKMSKH 242 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 242 (940)
..|.|.|+.|+||||+++.+++.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999987654
No 487
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.50 E-value=0.18 Score=48.11 Aligned_cols=21 Identities=43% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEEecCCchhhHHHHHHHH
Q 002299 217 KLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.|+|+|.+|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 488
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.47 E-value=0.56 Score=59.74 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHHHHhhc-CCCCeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEecchhhhccCCHHHHHHHHHHHhhCCCC----
Q 002299 203 EIELLLRT-GSAGVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAHNVREAQETGGLAHLRQQLLSTLLDDRN---- 277 (940)
Q Consensus 203 ~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---- 277 (940)
.|..+|.. +-.+-++|-|+|+.|+||||||.++....+.+=...+|++.- +.+.... +..+.-+-.
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e------~~~~~~~---~~~~Gv~~~~l~~ 1488 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE------HALDPIY---ARKLGVDIDNLLC 1488 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT------SCCCHHH---HHHTTCCGGGCEE
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecC------CCCCHHH---HHHcCCCHHHeEE
Confidence 44445542 223447899999999999999999998777777778888642 2222222 222222111
Q ss_pred -CCCchhhhHHHHHhhhcC-CceEEEEeCC
Q 002299 278 -VKNFPYIILNFQSKRFSC-KKVLIVFDDV 305 (940)
Q Consensus 278 -~~~~~~~~~~~l~~~l~~-~~~LlVlDdv 305 (940)
.++..++....+...++. ..-++|+|-|
T Consensus 1489 ~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1489 SQPDTGEQALEICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred eCCCcHHHHHHHHHHHHHcCCCCEEEEccH
Confidence 233445555555555543 4559999987
No 489
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=88.46 E-value=0.41 Score=46.74 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=25.1
Q ss_pred EEEEE-ecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 217 KLGIW-GIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 217 vv~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
+|+|+ +-||+||||+|..++..+..+- .+..++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 45554 7899999999999999877664 555554
No 490
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.45 E-value=0.19 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.237 Sum_probs=21.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
-.+++|.|+.|+|||||++.++.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998863
No 491
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.42 E-value=0.47 Score=47.59 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=27.5
Q ss_pred CeeEEEEEe-cCCchhhHHHHHHHHHhhcc-ccceEEEe
Q 002299 214 GVCKLGIWG-IGGIGKTTIAGAIFTKMSKH-FEGSYFAH 250 (940)
Q Consensus 214 ~~~vv~I~G-~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 250 (940)
..++|+|+| -||+||||+|..++..+..+ -..+..++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 346777775 79999999999999988765 33445544
No 492
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.41 E-value=0.45 Score=50.10 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=29.2
Q ss_pred CeeEEEEEecCCchhhHHHHHHHHHhhccccceEEEe
Q 002299 214 GVCKLGIWGIGGIGKTTIAGAIFTKMSKHFEGSYFAH 250 (940)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 250 (940)
..+++.+.|.||+||||+|..++..+...-..+..++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578889999999999999999988776544455554
No 493
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.36 E-value=0.23 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.8
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998874
No 494
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.29 E-value=0.2 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+++|+|+.|.|||||++.++.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999998863
No 495
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.28 E-value=0.17 Score=49.52 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
.+++|.|+.|+|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998763
No 496
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.27 E-value=0.2 Score=50.15 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=20.2
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999875
No 497
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.17 E-value=0.26 Score=45.66 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.2
Q ss_pred EEEEEecCCchhhHHHHHHHH
Q 002299 217 KLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 217 vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.|++.|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999986
No 498
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.16 E-value=0.21 Score=50.74 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.0
Q ss_pred eeEEEEEecCCchhhHHHHHHHHH
Q 002299 215 VCKLGIWGIGGIGKTTIAGAIFTK 238 (940)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~~~~~ 238 (940)
-.+++|.|+.|+|||||++.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 357999999999999999998853
No 499
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.14 E-value=0.37 Score=45.74 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCeeEEEEEecCCchhhHHHHHHHH
Q 002299 213 AGVCKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.....|+|+|.+|+|||||...+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3455689999999999999998875
No 500
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.13 E-value=0.21 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEEEEEecCCchhhHHHHHHHH
Q 002299 216 CKLGIWGIGGIGKTTIAGAIFT 237 (940)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~~~~ 237 (940)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999875
Done!