BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002301
(940 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 160/773 (20%), Positives = 301/773 (38%), Gaps = 98/773 (12%)
Query: 99 AIIGPQDAVTSHVVSHVANELQVPLLSFS-ATDPTLSSLQFPYFVRTTQSDQYQMAAIAE 157
AI G D + + ++ L V ++ S TD T P+ ++ + A+
Sbjct: 63 AIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGT-----HPFVIQMRPDLK---GALLS 114
Query: 158 IVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISF--KAPLSVEATEDEITDLLV 215
++++Y W + +Y D D G + + A+ D+ A K+ +++ ++ + ++ L
Sbjct: 115 LIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQ 173
Query: 216 KVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMD 275
+ L + R +++ ++ + +G GY +I N F +
Sbjct: 174 DLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIA---------NLGFTDGDLL 224
Query: 276 DIQ----GVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAY-GFYAYDTVWLLA 330
IQ V + D L KFI RW L + + P + Y YD V ++
Sbjct: 225 KIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 284
Query: 331 RAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARF 390
A + KQ + S+ D + + + G + ++ Q + G +G +F
Sbjct: 285 EAFRNLRKQ--RIEISRRGNAGDCLANPAVP----WGQGVEIERALKQVQVEGLSGNIKF 338
Query: 391 NSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLSVVRPETLYSKPPNRSSSNQRLYSVIW 450
+ +G IN I+ + G R+IGYWS + + +T S Q+ V
Sbjct: 339 DQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDDT--------SGLEQKTVVVT- 389
Query: 451 PGQTTQKPRGWVFPNNGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYA 510
+ P + N+ ++ G+E G+C+D+ AA
Sbjct: 390 --TILESPYVMMKANHA-----------------ALAGNERYEGYCVDL--AAEIAKHCG 428
Query: 511 VPYKLIPFGDGHNNPSCTE------LVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIE 564
YKL GDG + +V + G D A+ + I R ++ DF++P++
Sbjct: 429 FKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 488
Query: 565 SGL-VVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILE-----HRLNDEFR 618
G+ +++ +K ++FL P +W ++ V V++++ +EF
Sbjct: 489 LGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFE 548
Query: 619 GPPKRQ---------VVTIFWFSFSTMFFAHKEKTVSAL-GRXXXXXXXXXXXXXNSSYT 668
+ Q + WFS + + +L GR SSYT
Sbjct: 549 DGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYT 608
Query: 669 ASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQV---NSFARNYLVDELNIDESRLVPLNS 725
A+L + LTV+++ SPI+ + L S I Y S + ++ + + + S
Sbjct: 609 ANLAAFLTVERMVSPIESAEDL-SKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRS 667
Query: 726 --PEEYAKALKDG-----PHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGWGFAF 778
P + + +G KG A +++ + C+ VG G+G A
Sbjct: 668 AEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIAT 727
Query: 779 PRDSPLAVDISTAILKLSENGDLQRIHDKWLL-RSACSSQ--GAKLDVDRLQL 828
P+ S L ++ A+LKLSE G L ++ +KW + C ++ G+K L L
Sbjct: 728 PKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSL 780
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/443 (23%), Positives = 178/443 (40%), Gaps = 84/443 (18%)
Query: 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSG---FLA 85
P +VNIGA+LS + + + AV+ N G K++L H +A
Sbjct: 4 PKIVNIGAVLSTRKH-----EQMFREAVNQANK---RHGSWKIQLNATSVTHKPNAIQMA 55
Query: 86 LAEALHLMEGQTVAII-----GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPY 140
L+ L+ Q AI+ P D T VS+ A ++P+L + S
Sbjct: 56 LSVCEDLISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSIHL 115
Query: 141 -FVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKA 199
F+RT +Q + E++ Y W +I + DD GR L +TL +R + K
Sbjct: 116 SFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRL-ETLLEERESKAEKV 174
Query: 200 PLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWL 259
L + +T LL++ E+R+I++ + V+ A L M G+GYVW+
Sbjct: 175 -LQFDPGTKNVTALLMEARELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGE-- 231
Query: 260 STALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYG 319
+I G LR Y PD ++ + I + K + +I
Sbjct: 232 ---------------REISGN-ALR-YAPDGIIGLQLI-------NGKNESAHIS----- 262
Query: 320 FYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA 379
D V ++A+A++ + K++ +G + + I+ G L + ++ +
Sbjct: 263 ----DAVGVVAQAVHELLE--------KENITDPPRGC--VGNTNIWKTGPLFKRVLMSS 308
Query: 380 NMT-GTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLSVVRPETLYSKPPNR 438
G G FN GD Y I+N+ ++G Y+G V+ P +R
Sbjct: 309 KYADGVTGRVEFNEDGDRKFANYSIMNLQNRKLVQVGI---YNGTHVI--------PNDR 357
Query: 439 SSSNQRLYSVIWPGQTTQKPRGW 461
+IWPG T+KPRG+
Sbjct: 358 --------KIIWPGGETEKPRGY 372
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/453 (23%), Positives = 186/453 (41%), Gaps = 84/453 (18%)
Query: 51 AIKAAVDDVNSDPTTLGGTKLKLQMQD-CNHSGFLALAEALHLM----------EG---- 95
A+ ++ +NSDPT L L +++D C HS +AL +++ + EG
Sbjct: 58 AMLHTLERINSDPTLLPNITLGCEIRDSCWHSA-VALEQSIEFIRDSLISSEEEEGLVRC 116
Query: 96 ------------QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQ-FPYFV 142
V +IGP + + V ++ +P +++SAT LS F YF+
Sbjct: 117 VDGSSSSFRSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFM 176
Query: 143 RTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLS 202
R SD Q A+ +IV Y W V A++ + ++G +G+ A D A + I+ +
Sbjct: 177 RVVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIY 236
Query: 203 VEATEDEITDLLVKVA--LTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLS 260
A E LL K+ L ++R++ + + LG+ G + + W
Sbjct: 237 SNAGEQSFDKLLKKLTSHLPKARVVACFCEGMTVRGLLMAMRRLGLAGEFLLLGSDGWAD 296
Query: 261 TALDTNSPFPSDVMDDIQ----GVLTLRTYTPDSVLKRKFISRWRNLTDAKTP------- 309
DV D Q G +T++ +PD + + R T+ + P
Sbjct: 297 RY---------DVTDGYQREAVGGITIKLQSPDVKWFDDYYLKLRPETNHRNPWFQEFWQ 347
Query: 310 -------NGYIGLNA-YGFYAYDTVWL---------LARAINSFFKQGGNLSFSKDSRLS 352
G+ N+ Y ++ L + IN+ + L + ++S
Sbjct: 348 HRFQCRLEGFPQENSKYNKTCNSSLTLKTHHVQDSKMGFVINAIYSMAYGL---HNMQMS 404
Query: 353 DIQGHLRL-DSLRIFNGGNLLRDSILQANMTGTAGPA-RFNSHGDLINPA-YEIINVIGT 409
G+ L D+++ +G LL +S+++ N TG +G F+ +GD +P YEI+N
Sbjct: 405 LCPGYAGLCDAMKPIDGRKLL-ESLMKTNFTGVSGDTILFDENGD--SPGRYEIMNFKEM 461
Query: 410 G-----YRRIGYWSNYSGLSVVRPETLYSKPPN 437
G Y +G W N G + + ++SK N
Sbjct: 462 GKDYFDYINVGSWDN--GELKMDDDEVWSKKSN 492
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 151/372 (40%), Gaps = 50/372 (13%)
Query: 43 NVGKVAKLAIKAAVDDVNSD----PTTLGGTKLKLQMQDC-NHSGFLALAEALHLMEGQT 97
++G+ A++ A++ + ++ P L L+L +C N G A +A+
Sbjct: 31 SIGRGVLPAVELAIEQIRNESLLRPYFL---DLRLYDTECDNAKGLKAFYDAIKYGPNHL 87
Query: 98 VAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLS-SLQFPYFVRTTQSDQYQMAAIA 156
+ G +VTS +++ + LSF+AT P L+ ++PYF RT SD AI
Sbjct: 88 MVFGGVCPSVTS-IIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAIL 146
Query: 157 EIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVK 216
+++ HY W+ V + D L L + IS E+ ++ + K
Sbjct: 147 KLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEIS-----DTESFSNDPCTSVKK 201
Query: 217 VALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSW--------LSTALDTNSP 268
+ + RII+ N VF A M G+ Y WI W + T +++
Sbjct: 202 LKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRC 261
Query: 269 FPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGY----------IGLNAY 318
+++ ++G + + + P S + K IS KTP Y +G + +
Sbjct: 262 LRKNLLAAMEGYIGV-DFEPLSSKQIKTIS-------GKTPQQYEREYNNKRSGVGPSKF 313
Query: 319 GFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQ 378
YAYD +W++A+ + Q + SR IQ D G ++ +++ +
Sbjct: 314 HGYAYDGIWVIAKTL-----QRAMETLHASSRHQRIQDFNYTDHTL----GRIILNAMNE 364
Query: 379 ANMTGTAGPARF 390
N G G F
Sbjct: 365 TNFFGVTGQVVF 376
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/455 (22%), Positives = 173/455 (38%), Gaps = 105/455 (23%)
Query: 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH---SGFLA 85
P +VNIGA+LS K + + AV+ N T K++LQ H + +A
Sbjct: 2 PKIVNIGAVLS-----TKKHEQIFREAVNQANKRHFT---RKIQLQATSVTHRPNAIQMA 53
Query: 86 LAEALHLMEGQTVAII-----GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPY 140
L+ L+ Q AI+ P D +T +S+ A ++P++ + S
Sbjct: 54 LSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHL 113
Query: 141 -FVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCR----- 194
F+RT +Q E++ + W VI I DD GR L L K +
Sbjct: 114 SFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRN 173
Query: 195 ------ISF---KAP-----LSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 240
+S+ + P L E +T LL++ E+R+I++ + V+
Sbjct: 174 YENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKS 233
Query: 241 AQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRW 300
A L M G GYVW+ +I G LR Y PD ++ + I
Sbjct: 234 AAMLDMTGAGYVWLVGE-----------------REISGS-ALR-YAPDGIIGLQLI--- 271
Query: 301 RNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLR- 359
+ K + +I D V ++A+AI+ F+ + +I R
Sbjct: 272 ----NGKNESAHIS---------DAVAVVAQAIHELFE------------MENITDPPRG 306
Query: 360 -LDSLRIFNGGNLLRDSILQANM-TGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYW 417
+ + I+ G L + ++ + G G FN GD Y I+N+ ++G
Sbjct: 307 CVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGI- 365
Query: 418 SNYSGLSVVRPETLYSKPPNRSSSNQRLYSVIWPG 452
++G +++ N R +IWPG
Sbjct: 366 --FNGSYIIQ--------------NDR--KIIWPG 382
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/441 (21%), Positives = 167/441 (37%), Gaps = 81/441 (18%)
Query: 51 AIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--------------- 95
A+ A+D +NSDP L L ++ D AL ++L ++
Sbjct: 49 AMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGE 108
Query: 96 --------QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLS-SLQFPYFVRTTQ 146
+ V +IG + S +V+++ Q+P +S+++T P LS ++ +F R
Sbjct: 109 PPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVP 168
Query: 147 SDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAAL-------GDTLAAKRCRISFKA 199
D +Q A+ +IV GW V + + +G G+ + G A+ RI
Sbjct: 169 PDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIP--- 225
Query: 200 PLSVEATEDEITDL--LVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255
+ +D D ++K L SR +V+ + + A+ +G ++W+
Sbjct: 226 ----QERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGH-FLWVG 280
Query: 256 TSWLSTALDTNSPFPSDVMDDI-QGVLTLR----------TYTPDSVLKRKFISRWRNLT 304
+ + ++ P +DI +G +T++ Y L+ + W
Sbjct: 281 SDSWGSKIN-----PLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVW--FA 333
Query: 305 DAKTPNGYIGLNAYGFYAYDTVWLLAR----AINSFFKQGGNLSFSKDS--RLSDIQGHL 358
+ N L G DT +S ++Q G + F D+ ++ H+
Sbjct: 334 EYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHM 393
Query: 359 RLDSLRIFN---------GGNLLRDSILQANMTGTAG-PARFNSHGDLINP----AYEII 404
D + GG L I N G+AG P FN +GD Y+
Sbjct: 394 NKDLCADYRGVCPEMEQAGGKKLLKYIRHVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTT 453
Query: 405 NVIGTGYRRIGYWSNYSGLSV 425
N GYR IG W++ L++
Sbjct: 454 NTTNPGYRLIGQWTDELQLNI 474
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/435 (20%), Positives = 168/435 (38%), Gaps = 69/435 (15%)
Query: 51 AIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--------------- 95
A+ A+D +NSDP L L ++ D AL ++L ++
Sbjct: 49 AMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGE 108
Query: 96 --------QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLS-SLQFPYFVRTTQ 146
+ V +IG + S +V+++ Q+P +S+++T P LS ++ +F R
Sbjct: 109 PPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVP 168
Query: 147 SDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEAT 206
D +Q A+ +IV GW V + + +G G+ + ++ + +S + +
Sbjct: 169 PDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESF-TQISKEAGGLSIAQSVRIPQE 227
Query: 207 EDEIT---DLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLST 261
+ T D ++K L SR +V+ + + A+ +G ++W+ + +
Sbjct: 228 RKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGH-FLWVGSDSWGS 286
Query: 262 ALDTNSPFPSDVMDDI-QGVLTLR----------TYTPDSVLKRKFISRWRNLTDAKTPN 310
++ P +DI +G +T++ Y L+ + W + N
Sbjct: 287 KIN-----PLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVW--FAEYWEEN 339
Query: 311 GYIGLNAYGFYAYDTVWLLAR----AINSFFKQGGNLSFSKDS--RLSDIQGHLRLDSLR 364
L G DT +S ++Q G + F D+ ++ H+ D
Sbjct: 340 FNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCA 399
Query: 365 IFN---------GGNLLRDSILQANMTGTAG-PARFNSHGDLINP----AYEIINVIGTG 410
+ GG L I N G+AG P FN +GD Y+ N G
Sbjct: 400 DYRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPG 459
Query: 411 YRRIGYWSNYSGLSV 425
YR IG W++ L++
Sbjct: 460 YRLIGQWTDELQLNI 474
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 36/254 (14%)
Query: 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH---SGFLA 85
P +VNIGA+LS K + + AV+ N T K++LQ H + A
Sbjct: 3 PKIVNIGAVLS-----TKKHEQIFREAVNQANKRHFT---RKIQLQATSVTHRPNAIQXA 54
Query: 86 LAEALHLMEGQTVAII-----GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPY 140
L+ L+ Q AI+ P D +T +S+ A ++P++ + S
Sbjct: 55 LSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRXSIYSDKSIHL 114
Query: 141 -FVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCR----- 194
F+RT +Q E + W VI I DD GR L L K +
Sbjct: 115 SFLRTVPPYSHQALVWFEXXRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRN 174
Query: 195 ------ISF---KAP-----LSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 240
+S+ + P L E +T LL++ E+R+I++ + V+
Sbjct: 175 YENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKS 234
Query: 241 AQYLGMLGTGYVWI 254
A L G GYVW+
Sbjct: 235 AAXLDXTGAGYVWL 248
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 133/327 (40%), Gaps = 34/327 (10%)
Query: 99 AIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI 158
AI G + T ++++ L V ++ S P +S QF +R + A+ I
Sbjct: 70 AIFGFYERRTVNMLTSFCGALHVCFITPSF--PVDTSNQFVLQLRPELQE-----ALISI 122
Query: 159 VDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA 218
+DHY W+ + IY D D G + + + DT A K +++ L+ TE+ L +
Sbjct: 123 IDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVTAVNILT--TTEEGYRMLFQDLE 179
Query: 219 LTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQ 278
+ R++VV R + L G GY +I + +D N S ++
Sbjct: 180 KKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDLNKFKESGA--NVT 237
Query: 279 GVLTLRTYTPDSVLKRKFISRWRN-------LTDAKTPNGYIGLNAYGFYAYDTVWLLAR 331
G L YT D++ R + +WR D K P L YD V ++A
Sbjct: 238 G-FQLVNYT-DTIPAR-IMQQWRTSDSRDHTRVDWKRPKYTSAL------TYDGVKVMAE 288
Query: 332 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFN 391
A S +Q ++S ++ G + + G ++ ++ Q G G +FN
Sbjct: 289 AFQSLRRQRIDISRRGNA------GDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFN 342
Query: 392 SHGDLINPAYEIINVIGTGYRRIGYWS 418
G N +I + G R+IGYW+
Sbjct: 343 EKGRRTNYTLHVIEMKHDGIRKIGYWN 369
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 135/339 (39%), Gaps = 32/339 (9%)
Query: 99 AIIGPQDAVTSHVVSHVANELQVPLLSFS-ATDPTLSSLQFPYFVRTTQSDQYQMAAIAE 157
AI G D + + ++ L V ++ S TD T P+ ++ + A+
Sbjct: 71 AIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGT-----HPFVIQMRPDLK---GALLS 122
Query: 158 IVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISF--KAPLSVEATEDEITDLLV 215
++++Y W + +Y D D G + + A+ D+ A K+ +++ ++ + ++ L
Sbjct: 123 LIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQ 181
Query: 216 KVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMD 275
+ L + R +++ ++ + +G GY +I N F +
Sbjct: 182 DLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIA---------NLGFTDGDLL 232
Query: 276 DIQ----GVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAY-GFYAYDTVWLLA 330
IQ V + D L KFI RW L + + P + Y YD V ++
Sbjct: 233 KIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 292
Query: 331 RAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARF 390
A + KQ + S+ D + + + G + ++ Q + G +G +F
Sbjct: 293 EAFRNLRKQ--RIEISRRGNAGDCLANPAVP----WGQGVEIERALKQVQVEGLSGNIKF 346
Query: 391 NSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLSVVRPE 429
+ +G IN I+ + G R+IGYWS + V E
Sbjct: 347 DQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTE 385
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 51 AIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALH------------------- 91
A+ A+D++N D L G KL + + D AL ++L
Sbjct: 46 AMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDG 105
Query: 92 ---LMEGQTVAIIGPQDAVTSHVVSHVANEL---QVPLLSFSATDPTLSSL-QFPYFVRT 144
+ E + I G S V VAN L Q+P +S+++T LS ++ YF RT
Sbjct: 106 SYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFART 165
Query: 145 TQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAAL 184
D YQ A+AEI+ + W V + + D+G GI A
Sbjct: 166 VPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAF 205
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 135/340 (39%), Gaps = 32/340 (9%)
Query: 99 AIIGPQDAVTSHVVSHVANELQVPLLSFS-ATDPTLSSLQFPYFVRTTQSDQYQMAAIAE 157
AI G D + + ++ L V ++ S TD T P+ ++ + A+
Sbjct: 66 AIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGT-----HPFVIQMRPDLK---GALLS 117
Query: 158 IVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISF--KAPLSVEATEDEITDLLV 215
++++Y W + +Y D D G + + A+ D+ A K+ +++ ++ + ++ L
Sbjct: 118 LIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQ 176
Query: 216 KVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMD 275
+ L + R +++ ++ + +G GY +I N F +
Sbjct: 177 DLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIA---------NLGFTDGDLL 227
Query: 276 DIQ----GVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAY-GFYAYDTVWLLA 330
IQ V + D L KFI RW L + + P + Y YD V ++
Sbjct: 228 KIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 287
Query: 331 RAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARF 390
A + KQ + S+ D + + + G + ++ Q + G +G +F
Sbjct: 288 EAFRNLRKQ--RIEISRRGNAGDCLANPAVP----WGQGVEIERALKQVQVEGLSGNIKF 341
Query: 391 NSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLSVVRPET 430
+ +G IN I+ + G R+IGYWS + V T
Sbjct: 342 DQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTRT 381
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 51 AIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALH------------------- 91
A+ A+D++N D L G KL + + D AL ++L
Sbjct: 47 AMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDG 106
Query: 92 ---LMEGQTVAIIGPQDAVTSHVVSHVANEL---QVPLLSFSATDPTLSSL-QFPYFVRT 144
+ E + I G S V VAN L Q+P +S+++T LS ++ YF RT
Sbjct: 107 SYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFART 166
Query: 145 TQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAAL 184
D YQ A+AEI+ + W V + + D+G GI A
Sbjct: 167 VPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAF 206
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 134/335 (40%), Gaps = 32/335 (9%)
Query: 99 AIIGPQDAVTSHVVSHVANELQVPLLSFS-ATDPTLSSLQFPYFVRTTQSDQYQMAAIAE 157
AI G D + + ++ L V ++ S TD T P+ ++ + A+
Sbjct: 63 AIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGT-----HPFVIQMRPDLK---GALLS 114
Query: 158 IVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISF--KAPLSVEATEDEITDLLV 215
++++Y W + +Y D D G + + A+ D+ A K+ +++ ++ + ++ L
Sbjct: 115 LIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQ 173
Query: 216 KVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMD 275
+ L + R +++ ++ + +G GY +I N F +
Sbjct: 174 DLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIA---------NLGFTDGDLL 224
Query: 276 DIQ----GVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAY-GFYAYDTVWLLA 330
IQ V + D L KFI RW L + + P + Y YD V ++
Sbjct: 225 KIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 284
Query: 331 RAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARF 390
A + KQ + S+ D + + + G + ++ Q + G +G +F
Sbjct: 285 EAFRNLRKQ--RIEISRRGNAGDCLANPAVP----WGQGVEIERALKQVQVEGLSGNIKF 338
Query: 391 NSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLSV 425
+ +G IN I+ + G R+IGYWS + V
Sbjct: 339 DQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 134/335 (40%), Gaps = 32/335 (9%)
Query: 99 AIIGPQDAVTSHVVSHVANELQVPLLSFS-ATDPTLSSLQFPYFVRTTQSDQYQMAAIAE 157
AI G D + + ++ L V ++ S TD T P+ ++ + A+
Sbjct: 61 AIFGFYDKKSVNAITSFCGTLHVSFITPSFPTDGT-----HPFVIQMRPDLK---GALLS 112
Query: 158 IVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISF--KAPLSVEATEDEITDLLV 215
++++Y W + +Y D D G + + A+ D+ A K+ +++ ++ + ++ L
Sbjct: 113 LIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQ 171
Query: 216 KVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMD 275
+ L + R +++ ++ + +G GY +I N F +
Sbjct: 172 DLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIA---------NLGFTDGDLL 222
Query: 276 DIQ----GVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAY-GFYAYDTVWLLA 330
IQ V + D L KFI RW L + + P + Y YD V ++
Sbjct: 223 KIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 282
Query: 331 RAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARF 390
A + KQ + S+ D + + + G + ++ Q + G +G +F
Sbjct: 283 EAFRNLRKQ--RIEISRRGNAGDCLANPAVP----WGQGVEIERALKQVQVEGLSGNIKF 336
Query: 391 NSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLSV 425
+ +G IN I+ + G R+IGYWS + V
Sbjct: 337 DQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 371
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 135/339 (39%), Gaps = 32/339 (9%)
Query: 99 AIIGPQDAVTSHVVSHVANELQVPLLSFS-ATDPTLSSLQFPYFVRTTQSDQYQMAAIAE 157
AI G D + + ++ L V ++ S TD T P+ ++ + A+
Sbjct: 63 AIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGT-----HPFVIQMRPDLK---GALLS 114
Query: 158 IVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISF--KAPLSVEATEDEITDLLV 215
++++Y W + +Y D D G + + A+ D+ A K+ +++ ++ + ++ L
Sbjct: 115 LIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDEMYRSLFQ 173
Query: 216 KVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMD 275
+ L + R +++ ++ + +G GY +I N F +
Sbjct: 174 DLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIA---------NLGFTDGDLL 224
Query: 276 DIQ----GVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAY-GFYAYDTVWLLA 330
IQ V + D L KFI RW L + + P + Y YD V ++
Sbjct: 225 KIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTTTIKYTSALTYDAVQVMT 284
Query: 331 RAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARF 390
A + KQ + S+ D + + + G + ++ Q + G +G +F
Sbjct: 285 EAFRNLRKQ--RIEISRRGNAGDCLANPAVP----WGQGVEIERALKQVQVEGLSGNIKF 338
Query: 391 NSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLSVVRPE 429
+ +G IN I+ + G R+IGYWS + V E
Sbjct: 339 DQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTE 377
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/333 (19%), Positives = 130/333 (39%), Gaps = 23/333 (6%)
Query: 99 AIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI 158
AI G D + H ++ + L + L++ S PT QF +R + A+ +
Sbjct: 72 AIFGLYDKRSVHTLTSFCSALHISLITPSF--PTEGESQFVLQLRPSLR-----GALLSL 124
Query: 159 VDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATED-EITDLLVKV 217
+DHY W + +Y D D G + + A+ + +S + VE D LL ++
Sbjct: 125 LDHYEWNCFVFLY-DTDRGYSILQAIMEKAGQNGWHVS---AICVENFNDVSYRQLLEEL 180
Query: 218 ALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDI 277
+ + V+ R + +G GY +I + + ++
Sbjct: 181 DRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLERFIHGGA--NV 238
Query: 278 QGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFF 337
G + TP + K + RW+ L + P YD V ++A S
Sbjct: 239 TGFQLVDFNTP---MVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLR 295
Query: 338 KQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLI 397
+Q ++S ++ G + + G + ++ Q + G G +F+ +G +
Sbjct: 296 RQKIDISRRGNA------GDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRV 349
Query: 398 NPAYEIINVIGTGYRRIGYWSNYSGLSVVRPET 430
N ++ + TG R++GYW++ L +++ T
Sbjct: 350 NYTMDVFELKSTGPRKVGYWNDMDKLVLIQDRT 382
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 666 SYTASLTSILTVQKLSSPIKGIDSLRSSNYP---IGYQVNSFARNYLVDELNIDESRLVP 722
S + S S+ + + + I G+D L++ P IG ++ + +Y + E++ P
Sbjct: 99 SNSISDNSMRILMRKGTLIDGMDDLKNGKIPYNRIGIRIGTAGEDYYLREISGGSRNFYP 158
Query: 723 LNSPEEYAKALKDGPHKGGVAAVVD----DRAYAELFLST-RCEFSIVGQVFTKNGWGFA 777
L S +E +L +A ++D D AE + C ++VG+ F K+ +G
Sbjct: 159 LKSRQEMYDSL--------LAGIIDVSFMDIGTAEYVTNNIYCNLTLVGEDFDKSTFGIV 210
Query: 778 FPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSAC 814
P++ A D+ IL L E G L + KW AC
Sbjct: 211 TPKEWLYAKDLDVNILSLRETGILDNLKKKWFQTKAC 247
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 467 GRHLRIGVPNRVSFREFVSV-----KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDG 521
G LRIGV V F +V + + +G+ +D+ + + + +L P
Sbjct: 7 GITLRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAP---- 62
Query: 522 HNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQ 560
N S T LV + G YD A+GDI + + R ++ F+
Sbjct: 63 -PNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSN 100
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 32/188 (17%)
Query: 51 AIKAAVDDVNSDPTTLGGTKLKLQMQD-CNHSGFLALAEALHLM---------------- 93
A+ +D +N+DP L L +++D C HS +AL +++ +
Sbjct: 49 AMFHTLDKINADPVLLPNITLGSEIRDSCWHSS-VALEQSIEFIRDSLISIRDEKDGLNR 107
Query: 94 ---EGQTV----------AIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQ-FP 139
+GQT+ +IGP + + V ++ +P +++SAT LS +
Sbjct: 108 CLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 167
Query: 140 YFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKA 199
YF+R SD Q A+ +IV Y W V A++ + ++G +G+ A + A + I+
Sbjct: 168 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSD 227
Query: 200 PLSVEATE 207
+ A E
Sbjct: 228 KIYSNAGE 235
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 51 AIKAAVDDVNSDPTTLGGTKLKLQMQD-CNHSGFLALAEALHLMEGQTVAIIGPQDAV-- 107
A+ +D +N+DP L L +++D C HS +AL +++ + ++I +D +
Sbjct: 54 AMFHTLDKINADPVLLPNITLGSEIRDSCWHSS-VALEQSIEFIRDSLISIRDEKDGINR 112
Query: 108 ------------------------TSHVVSHVANELQ---VPLLSFSATDPTLSSLQ-FP 139
+S V V N LQ +P +++SAT LS +
Sbjct: 113 CLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 172
Query: 140 YFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKA 199
YF+R SD Q A+ +IV Y W V A++ + ++G +G+ A + A + I+
Sbjct: 173 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSD 232
Query: 200 PLSVEATE 207
+ A E
Sbjct: 233 KIYSNAGE 240
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/405 (21%), Positives = 152/405 (37%), Gaps = 29/405 (7%)
Query: 29 PSVVNIGALLSFS----TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN-HSGF 83
P V+ IG + ++ V + A + + + +N + T L T L +Q + H F
Sbjct: 2 PHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSF 61
Query: 84 LALAEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVR 143
A +A + VAI GP ++ V + N L+VP + L + + ++V
Sbjct: 62 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDN-KDTFYVN 120
Query: 144 TTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSV 203
AI ++V WR +Y DD G + L +A R I K +
Sbjct: 121 LYPDYASLSHAILDLVQSLKWRSATVVY-DDSTGLIRLQEL--IMAPSRYNIRLKIR-QL 176
Query: 204 EATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTAL 263
D+ LL ++ I+ + + A +GM+ Y +I T+ AL
Sbjct: 177 PIDSDDSRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYAL 236
Query: 264 DTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAY 323
D S V + R D+ + +W P GL G
Sbjct: 237 DLEPYRYSGV-----NLTGFRILNVDNPHVSAIVEKWSMERLQAAPRAESGL-LDGVMMT 290
Query: 324 DTVWLL--ARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANM 381
D L ++ +++ ++ ++ +Q H R + R GG + + I +A
Sbjct: 291 DAALLYDAVHIVSVCYQRAPQMT------VNSLQCH-RHKAWRF--GGRFM-NFIKEAQW 340
Query: 382 TGTAGPARFNSHGDL-INPAYEIINVIGTGYRRIGYWSNYSGLSV 425
G G FN L + +II++ G ++G WS GL++
Sbjct: 341 EGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNI 385
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 725 SPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPL 784
S E +A++D + A + D A E S +C+ G++F ++G+G +DSP
Sbjct: 205 SAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPW 260
Query: 785 AVDISTAILKLSENGDLQRIHDKWLLRSACSS 816
++S +ILK ENG ++ + W+ C S
Sbjct: 261 KQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 725 SPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPL 784
S E +A++D + A + D A E S +C+ G++F ++G+G +DSP
Sbjct: 205 SAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPW 260
Query: 785 AVDISTAILKLSENGDLQRIHDKWLLRSACSS 816
++S +ILK ENG ++ + W+ C S
Sbjct: 261 KQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 155/385 (40%), Gaps = 25/385 (6%)
Query: 49 KLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN-HSGFLALAEALHLMEGQTVAIIGPQDAV 107
+LA + AV+ +N + T L T L Q N + F A +A + AI GP +
Sbjct: 23 ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSS 82
Query: 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREV 167
+++ V + N L VP + + +S + ++V AI ++V + W+ V
Sbjct: 83 SANAVQSICNALGVPHIQ-TRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTV 141
Query: 168 IAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVV 227
+Y DD G + L + R+ + + A + LL ++ + ++
Sbjct: 142 TVVY-DDSTGLIRLQELIKAPSRYNLRLKIR---QLPADTKDAKPLLKEMKRGKEFHVIF 197
Query: 228 HTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYT 287
+ + A +GM+ Y +I T+ ALD S V +L
Sbjct: 198 DCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQ 257
Query: 288 PDSVLKRKFISRWRN--LTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345
S++++ + R + D+ +G++ +A YD V +++ A+ F ++
Sbjct: 258 VSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAA--LMYDAVHVVSVAVQQF----PQMTV 311
Query: 346 SKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFN-SHGDLINPAYEII 404
S L+ + + + G I +A+ G G FN ++G + ++I
Sbjct: 312 SS----------LQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVI 361
Query: 405 NVIGTGYRRIGYWSNYSGLSVVRPE 429
++ G +IG W SGL++ +
Sbjct: 362 SLKEEGLEKIGTWDPASGLNMTESQ 386
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/385 (20%), Positives = 154/385 (40%), Gaps = 25/385 (6%)
Query: 49 KLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN-HSGFLALAEALHLMEGQTVAIIGPQDAV 107
+LA + AV+ +N + T L T L Q N + F A +A + AI GP +
Sbjct: 23 ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSS 82
Query: 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREV 167
+++ V + N L VP + + +S + ++V AI ++V + W+ V
Sbjct: 83 SANAVQSICNALGVPHIQ-TRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTV 141
Query: 168 IAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVV 227
+Y DD G + L + R+ + + A + LL ++ + ++
Sbjct: 142 TVVY-DDSTGLIRLQELIKAPSRYNLRLKIR---QLPADTKDAKPLLKEMKRGKEFHVIF 197
Query: 228 HTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYT 287
+ + A + M+ Y +I T+ ALD S V +L
Sbjct: 198 DCSHEMAAGILKQALNMSMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQ 257
Query: 288 PDSVLKRKFISRWRN--LTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345
S++++ + R + D+ +G++ +A YD V +++ A+ F ++
Sbjct: 258 VSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAA--LMYDAVHVVSVAVQQF----PQMTV 311
Query: 346 SKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFN-SHGDLINPAYEII 404
S L+ + + + G I +A+ G G FN ++G + ++I
Sbjct: 312 SS----------LQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVI 361
Query: 405 NVIGTGYRRIGYWSNYSGLSVVRPE 429
++ G +IG W SGL++ +
Sbjct: 362 SLKEEGLEKIGTWDPASGLNMTESQ 386
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 733 LKDGPHKGGVAAVVDDRAYA--ELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
LK+ P K + A + D+A E+ + C+ VG+ F G+G P +SPL +IS
Sbjct: 211 LKNDPEK--LDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISE 268
Query: 791 AILKLSENGDLQRIHDKWLLRSAC 814
I + +G + +HDKW C
Sbjct: 269 LISQYKSHGFMDVLHDKWYKVVPC 292
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 484 VSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGH----NNPSCTELVRLITAGVY 539
V +K + G+CID+ + + + L GDG N T LV + +G
Sbjct: 60 VPIKFKKCCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTA 117
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVR 574
+ AV +I T R+++ DFT P+ + L ++ R
Sbjct: 118 NMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTR 152
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 231 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 290
Query: 814 CSSQGAK 820
C + +K
Sbjct: 291 CPEEESK 297
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 37 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 96
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV 570
+AI R K+ DF++P++ G+ ++
Sbjct: 97 APLAITYVREKVIDFSKPFMTLGISIL 123
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 753 ELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRS 812
E+ + C+ VG+ F G+G P++SPL ++S I + +G + +HDKW
Sbjct: 229 EVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYKMV 288
Query: 813 AC 814
C
Sbjct: 289 PC 290
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 494 GFCIDVFTAAINLLPYAVPYKLIPFGDGH----NNPSCTELVRLITAGVYDAAVGDIAII 549
G+CID+ L A ++L GDG + T LV + AG AV +I
Sbjct: 68 GYCIDLLERLAEDL--AFDFELYIVGDGKYGALRDGRWTGLVGDLLAGRAHMAVTSFSIN 125
Query: 550 TNRTKMADFTQPYIESGLVVVAPVR 574
+ R+++ DFT P+ + L ++ R
Sbjct: 126 SARSQVVDFTSPFFSTSLGIMVRTR 150
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 727 EEYAKALKDGPHKGGVAAVVDDRAYAELFLST---RCEFSIVGQVFTKNGWGFAFPRDSP 783
EE KAL+ K A V D A LF + + + IVG + + +G P +SP
Sbjct: 141 EEAYKALQT---KKADAVVFD--APVLLFYAANEGKGKVEIVGSILREESYGIILPNNSP 195
Query: 784 LAVDISTAILKLSENGDLQRIHDKWL 809
I+ A+L L ENG Q ++DKW
Sbjct: 196 YRKPINQALLNLKENGTYQSLYDKWF 221
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 493 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNR 552
SGF ID++ + + + KLI + S EL+ I + + I+I R
Sbjct: 24 SGFSIDLWRSIATQI--GIESKLIEYS------SVPELISAIKDNKVNLGIAAISITAER 75
Query: 553 TKMADFTQPYIESGLVVVAPVRKLDS 578
+ DF+ P SGL ++ VR L+S
Sbjct: 76 EQNFDFSLPIFASGLQIM--VRNLES 99
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P+ SP I+ AIL+L E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPKGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AILKL E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R ++ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AILKL E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R ++ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AILKL E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R ++ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AILKL E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R ++ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AILKL E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRKKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKLSE G L ++ +KW
Sbjct: 237 AVLKLSEQGVLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKLSE G L ++ +KW
Sbjct: 237 AVLKLSEQGVLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C+ VG G+G A P+ S L ++ A+LKLSE G L ++ +KW
Sbjct: 222 CDTMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKW 270
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYA-VPYKLIPFGDGHNNPSCTE------LVRLITAGV 538
++G+E G+C+D+ A + + + YKL GDG E +V + G
Sbjct: 42 LEGNERYEGYCVDL---AYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGR 98
Query: 539 YDAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D AV + I R ++ DF++P++ G+ ++
Sbjct: 99 ADIAVAPLTITLVREEVIDFSKPFMSLGISIM 130
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Query: 814 C 814
C
Sbjct: 257 C 257
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 753 ELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRS 812
E C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 195 EYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN 254
Query: 813 ACSS 816
C S
Sbjct: 255 GCPS 258
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNPSCTELVRLITAGVYDAAVG 544
G++ G+C+D+ N+L + KL+P +G ++ +V+ + D AV
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 87
Query: 545 DIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+ I R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 PLTITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVRDGSTMTFF 146
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 196 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Query: 814 C 814
C
Sbjct: 256 C 256
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 27 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAV 86
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 87 APLAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 146
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C+ VG G+G A P+ S L ++ A+LKLSE G L ++ +KW
Sbjct: 203 CDTMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKW 251
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 18/137 (13%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYA-VPYKLIPFGDGHNNPSCTE------LVRLITAGV 538
++G+E G+C+D+ A + + + YKL GDG E +V + G
Sbjct: 23 LEGNERYEGYCVDL---AYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGR 79
Query: 539 YDAAVGDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGV 594
D AV + I R ++ DF++P++ G+ ++ P+ + A + + G
Sbjct: 80 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTEIAYGTLDSGS 139
Query: 595 TAIFF----LAVGAVVW 607
TA FF +AV +W
Sbjct: 140 TAEFFRRSKIAVYEKMW 156
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/398 (17%), Positives = 156/398 (39%), Gaps = 26/398 (6%)
Query: 27 GRPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDP-TTLGGTKLKLQMQDCNHSGFLA 85
G P+ ++IG L +T A + AV N++ TT L + + S +
Sbjct: 1 GFPNTISIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFS 57
Query: 86 LAEALHLMEGQTV-AIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRT 144
+ A + V AI G D ++ + ++ L ++ S PT + +QF +R
Sbjct: 58 VTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF--PTDADVQFVIQMRP 115
Query: 145 TQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE 204
AI ++ +Y W + + +Y D + G + + A+ + +++ ++ +++
Sbjct: 116 ALK-----GAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIK 169
Query: 205 ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALD 264
+ E ++ ++ + + ++ R + LG GY ++ L
Sbjct: 170 DVQ-EFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGY-----HYMLANLG 223
Query: 265 TNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIG-LNAYGFYAY 323
VM + + ++ + ++FI RW L + + P L +
Sbjct: 224 FTDILLERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTH 283
Query: 324 DTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTG 383
D + ++A A +Q ++S + G + ++ G + ++ + G
Sbjct: 284 DAILVIAEAFRYLRRQRVDVSRRGSA------GDCLANPAVPWSQGIDIERALKMVQVQG 337
Query: 384 TAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYS 421
G +F+++G N ++ + +G R+ GYW+ Y
Sbjct: 338 MTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYE 375
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C+ VG G+G A P+ S L ++ A+LKLSE G L ++ +KW
Sbjct: 203 CDTMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKW 251
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYA-VPYKLIPFGDGHNNPSCTE------LVRLITAGV 538
++G+E G+C+D+ A + + + YKL GDG E +V + G
Sbjct: 23 LEGNERYEGYCVDL---AYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGR 79
Query: 539 YDAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D AV + I R ++ DF++P++ G+ ++
Sbjct: 80 ADIAVAPLTITLVREEVIDFSKPFMSLGISIM 111
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 206 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 265
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKLSE G L ++ +KW
Sbjct: 266 AVLKLSEQGLLDKLKNKW 283
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 55 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 112
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 113 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 143
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 176 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNL 235
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKLSE G L ++ +KW
Sbjct: 236 AVLKLSEQGVLDKLKNKW 253
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 25 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 82
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 83 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 113
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKLSE G L ++ +KW
Sbjct: 237 AVLKLSEQGVLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNPSCTELVRLITAGVYDAAVG 544
G++ G+C+D+ N+L + KL+P +G ++ +V+ + D AV
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 87
Query: 545 DIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+ I R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 PLTITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVRDGSTMTFF 146
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 753 ELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRS 812
E C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 195 EYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN 254
Query: 813 AC 814
C
Sbjct: 255 GC 256
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNPSCTELVRLITAGVYDAAVG 544
G++ G+C+D+ N+L + KL+P +G ++ +V+ + D AV
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 87
Query: 545 DIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+ I R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 PLTITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVRDGSTMTFF 146
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 753 ELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRS 812
E C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 195 EYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN 254
Query: 813 AC 814
C
Sbjct: 255 GC 256
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNPSCTELVRLITAGVYDAAVG 544
G++ G+C+D+ N+L + KL+P +G ++ +V+ + D AV
Sbjct: 27 GNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 86
Query: 545 DIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+ I R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 87 PLTITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVRDGSTMTFF 145
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 753 ELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRS 812
E C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 194 EYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN 253
Query: 813 AC 814
C
Sbjct: 254 GC 255
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNPSCTELVRLITAGVYDAAVG 544
G++ G+C+D+ N+L + KL+P +G ++ +V+ + D AV
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVA 87
Query: 545 DIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+ I R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 PLTITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVRDGSTMTFF 146
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 753 ELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRS 812
E C + +G + G+G P SP I+ AIL+L E G L + +KW +
Sbjct: 195 EYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN 254
Query: 813 AC 814
C
Sbjct: 255 GC 256
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 174 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 233
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKLSE G L ++ +KW
Sbjct: 234 AVLKLSEQGLLDKLKNKW 251
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 23 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 80
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 81 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 111
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 755 FLSTR-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSA 813
F++ R C + +G + G+G P SP I+ AI +L E G L + +KW +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAICQLQEEGKLHMMKEKWWRGNG 256
Query: 814 CSS 816
C S
Sbjct: 257 CPS 259
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG----DGHNNPSCTELVRLITAGVYDAAV 543
G++ G+CID+ +L + +L+ G N +VR + D AV
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 87
Query: 544 GDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+AI R K+ DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 APLAITCVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFF 147
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKLSE G L ++ +KW
Sbjct: 237 AVLKLSEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 193 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 252
Query: 791 AILKLSENGDLQRIHDKWLL-RSACSS 816
A+LKL+E G L ++ +KW + C S
Sbjct: 253 AVLKLNEQGLLDKLKNKWWYDKGECGS 279
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 42 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 99
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 100 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 130
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKLSE G L ++ +KW
Sbjct: 237 AVLKLSEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITYVREEVIDFSKPFMSLGISIM 114
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 178 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 237
Query: 791 AILKLSENGDLQRIHDKWLL-RSACSSQGA 819
A+LKL+E G L ++ +KW + C S G
Sbjct: 238 AVLKLNEQGLLDKLKNKWWYDKGECGSGGG 267
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 27 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 84
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 85 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 115
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 190 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 249
Query: 791 AILKLSENGDLQRIHDKWLL-RSACSSQGA 819
A+LKL+E G L ++ +KW + C S G
Sbjct: 250 AVLKLNEQGLLDKLKNKWWYDKGECGSGGG 279
Score = 33.5 bits (75), Expect = 0.63, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 39 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 96
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 97 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 127
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 144/343 (41%), Gaps = 48/343 (13%)
Query: 35 GALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLM- 93
G+L ++ T K A+LA VD++N+ + G ++++ +D A + +L+
Sbjct: 18 GSLAAYGTAEQKGAQLA----VDEINA-AGGIDGKQIEVVDKDNKSETAEAASVTTNLVT 72
Query: 94 EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMA 153
+ + A++GP + + A + VPL+S SAT L+ Q F+ T Q D +Q
Sbjct: 73 QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQ-DSFQGK 131
Query: 154 AIAEIVDHYGWREVIAIYVDD--DHGRNGIAALGDTLAAKRCRISFKAPLSVEAT----E 207
I+ V + + +Y D+ D+ + GI AK R S+K + + T +
Sbjct: 132 IISNYVSEKLNAKKVVLYTDNASDYAK-GI--------AKSFRESYKGEIVADETFVAGD 182
Query: 208 DEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM-----LGTGYVWIATSWLSTA 262
+ L K+ + IVV +YN + + A+ +G+ G G+ +TA
Sbjct: 183 TDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQATA 242
Query: 263 LDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYA 322
+ +I + T S + F+ +R + + P+ + L A
Sbjct: 243 ---------EKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN-EEPSTFAAL------A 286
Query: 323 YDTVWLLARAINSFFKQG---GNLSFSKDSRLSDIQGHLRLDS 362
YD+V L+A A G NL+ +KD + G D+
Sbjct: 287 YDSVHLVANAAKGAKNSGEIKDNLAXTKD--FEGVTGQTSFDA 327
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C+ VG G+G A P+ S L ++ A+LKLSE G L ++ +KW
Sbjct: 204 CDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKW 252
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRNAVNL 236
Query: 791 AILKLSENGDLQRIHDKWLL-RSACSS 816
A+LKL+E G L ++ +KW + C S
Sbjct: 237 AVLKLNEQGLLDKLKNKWWYDKGECGS 263
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C+ VG G+G A P+ S L ++ A+LKLSE G L ++ +KW
Sbjct: 202 CDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKW 250
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 744 AVVDDRAYAELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQR 803
A++ + E C + +G + G+G P SP I+ AIL+L E L
Sbjct: 187 ALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHI 246
Query: 804 IHDKWLLRSAC 814
+ +KW S C
Sbjct: 247 MKEKWWRGSGC 257
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLI---PFGDGHNNPSCTELVRLITAGVYDAAVG 544
G++ G+CID+ ++L ++ +L+ +G + +V+ + D AV
Sbjct: 30 GNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVA 89
Query: 545 DIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+ I R K DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 90 PLTITHVREKAIDFSKPFMTLGVSILYRKGTPIDSADDLAKQTKIEYGAVKDGATMTFF 148
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C+ VG G+G A P+ S L ++ A+LKLSE G L ++ +KW
Sbjct: 202 CDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKW 250
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 744 AVVDDRAYAELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQR 803
A++ + E C + +G + G+G P SP I+ AIL+L E L
Sbjct: 185 ALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHI 244
Query: 804 IHDKWLLRSAC 814
+ +KW S C
Sbjct: 245 MKEKWWRGSGC 255
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLI---PFGDGHNNPSCTELVRLITAGVYDAAVG 544
G++ G+CID+ ++L ++ +L+ +G + +V+ + D AV
Sbjct: 28 GNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVA 87
Query: 545 DIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVTAIFF 599
+ I R K DF++P++ G+ ++ P+ D A + + G T FF
Sbjct: 88 PLTITHVREKAIDFSKPFMTLGVSILYRKGTPIDSADDLAKQTKIEYGAVKDGATMTFF 146
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 174 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 233
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 234 AVLKLNEQGLLDKLKNKW 251
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 23 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 80
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 81 DIAIAPLTITLCREEVIDFSKPFMSLGISIM 111
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 174 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 233
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 234 AVLKLNEQGLLDKLKNKW 251
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGH------NNPSCTELVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 23 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGCRDADTKIWNGMVGELVYGKA 80
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 81 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 111
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 175 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 234
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 235 AVLKLNEQGLLDKLKNKW 252
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 24 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 81
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 82 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 112
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 176 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 235
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 236 AVLKLNEQGLLDKLKNKW 253
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 25 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 82
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 83 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 113
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 174 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 233
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 234 AVLKLNEQGLLDKLKNKW 251
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 23 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 80
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 81 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 111
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDG------HNNPSCTELVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDEDTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 485 SVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGV 538
+++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 25 ALEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGK 82
Query: 539 YDAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 83 ADIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITYVREEVIDFSKPFMSLGISIM 114
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVT 595
D A+ + I R ++ DF++P++ G+ ++ P+ + LS T + +G T
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAED-----LSKQTEIAYGTT 138
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGH------NNPSCTELVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKWGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGVT 595
D A+ + I R ++ DF++P++ G+ ++ P+ + LS T + +G T
Sbjct: 84 DIAIAPLTITYVREEVIDFSKPFMSLGISIMIKKGTPIESAED-----LSKQTEIAYGTT 138
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 193 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 252
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 253 AVLKLNEQGLLDKLKNKW 270
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 38 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 95
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSN 579
D A+ + I R ++ DF++P++ G+ ++ D N
Sbjct: 96 DIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPGTDGN 135
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL E G L ++ +KW
Sbjct: 237 AVLKLDEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C+ VG G+G A P+ S L ++ A+LKL+E G L ++ +KW
Sbjct: 203 CDTMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKW 251
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYA-VPYKLIPFGDGHNNPSCTE------LVRLITAGV 538
++G+E G+C+D+ A + + + YKL GDG E +V + G
Sbjct: 23 LEGNERYEGYCVDL---AYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGR 79
Query: 539 YDAAVGDIAIITNRTKMADFTQPYIESGLVVV----APVRKLDSNAWAFLSPFTPMMWGV 594
D AV + I R ++ DF++P++ G+ ++ P+ + A + + G
Sbjct: 80 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTEIAYGTLASGS 139
Query: 595 TAIFF----LAVGAVVW 607
T FF +AV +W
Sbjct: 140 TKEFFRRSKIAVYEKMW 156
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C+ VG G+G A P+ S L ++ A+LKL+E G L ++ +KW
Sbjct: 203 CDTMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKW 251
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYA-VPYKLIPFGDGHNNPSCTE------LVRLITAGV 538
++G+E G+C+D+ A + + + YKL GDG E +V + G
Sbjct: 23 LEGNERYEGYCVDL---AYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGR 79
Query: 539 YDAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D AV + I R ++ DF++P++ G+ ++
Sbjct: 80 ADIAVAPLTITLVREEVIDFSKPFMSLGISIM 111
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 177 GVARVRKSKGKYAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNL 236
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 237 AVLKLNEQGLLDKLKNKW 254
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 26 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 175 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGCNLDSKGYGIATPKGSSLGNAVNL 234
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 235 AVLKLNEQGLLDKLKNKW 252
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 24 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 81
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 82 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 112
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 741 GVAAVVDDRA-YAELFLSTR---------CEFSIVGQVFTKNGWGFAFPRDSPLAVDIST 790
GVA V + YA L ST C+ VG G+G A P+ S L ++
Sbjct: 175 GVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDCKGYGIATPKGSSLGNAVNL 234
Query: 791 AILKLSENGDLQRIHDKW 808
A+LKL+E G L ++ +KW
Sbjct: 235 AVLKLNEQGLLDKLKNKW 252
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 486 VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTE------LVRLITAGVY 539
++G+E G+C+D+ AA YKL GDG + +V + G
Sbjct: 24 LEGNERYEGYCVDL--AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 81
Query: 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVV 570
D A+ + I R ++ DF++P++ G+ ++
Sbjct: 82 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 112
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 81/397 (20%), Positives = 145/397 (36%), Gaps = 36/397 (9%)
Query: 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAE 88
S + + A+L T G+ +LA+ A + +N ++++ + + S +
Sbjct: 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDT 62
Query: 89 ALHLMEGQTVAIIGPQDAVTSH-VVSHVANELQVPLLSFSATD-PTLSSLQFPYFVRTTQ 146
++ V+++GP + S VSH+ E ++P + + P L L+F V
Sbjct: 63 MCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFAS-VSLYP 121
Query: 147 SDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEAT 206
S++ A++ I+ + + I + L R + K LSV
Sbjct: 122 SNEDVSLAVSRILKSFNYPSASLICAKAE-------CLLRLEELVRGFLISKETLSVRML 174
Query: 207 ED--EITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALD 264
+D + T LL ++ + I++ + + +V A LGM Y +I T+ L
Sbjct: 175 DDSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILH 234
Query: 265 TNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISR----WRNLTDAKTPNGYIGLNAYGF 320
+ +++D +L + +F+ WR +A T G A F
Sbjct: 235 LDG-----IVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMF 289
Query: 321 YAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQAN 380
A V R +N + G L S I+ G L + +
Sbjct: 290 DAVHVVVSAVRELNRSQEIGVK--------------PLACTSANIWPHGTSLMNYLRMVE 335
Query: 381 MTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYW 417
G G FNS G N I+ G+R IG W
Sbjct: 336 YDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVW 372
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 474 VPNRVSFREFVSVKGS--------EMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNP 525
V N V R+FV + S + GFCID+ + + L+ G H
Sbjct: 31 VRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGK-HGKK 89
Query: 526 SCTELVRLITAGVYD---AAVGDIAIITNRTKMADFTQPYIESGLVVVA 571
+I VY AVG + I R+++ DF+ P++E+G+ V+
Sbjct: 90 VNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMV 138
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 766 GQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWL 809
G +F G+G A + SP I A+L+ +G+++ + WL
Sbjct: 235 GYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL 278
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C F VG G+G A SP S IL+L ++GD+ + KW
Sbjct: 208 CSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKW 256
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 667 YTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSP 726
Y + L ++ VQ ++ IK ID L I + + +++ L E R P N
Sbjct: 107 YDSGLAAM--VQANNTTIKSIDDLNGK--VIAAKTGTATIDWIKAHLKPKEIRQFP-NID 161
Query: 727 EEYAKALKDGPHKGGVAAVVDDRAYAELFLST--RCEFSIVGQVFTKNGWGFAFPRDSPL 784
+ Y AL+ G V A + D F++ + + G + + +G FP+ SPL
Sbjct: 162 QAYL-ALE----AGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPL 216
Query: 785 AVDISTAILKLSENGDLQRIHDKWLLRSACSSQ 817
++ + ++ +G +I+ KW SQ
Sbjct: 217 VAKVNAELARMKADGRYAKIYKKWFGSEPPKSQ 249
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKW 808
C F VG G+G A SP S IL+L ++GD + KW
Sbjct: 208 CSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDXDILKHKW 256
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 492 TSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVY----DAAVGDIA 547
GFCID+ + + ++ Y L +G + + + V+ D A+G +
Sbjct: 59 CKGFCIDILKRLAHTIGFS--YDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIGSLT 116
Query: 548 IITNRTKMADFTQPYIESGLVVV 570
I R+++ DF+ P++E+G+ V+
Sbjct: 117 INEERSEIVDFSVPFVETGISVM 139
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 201 LSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLS 260
+S++ + +I + L K+ +S II+++ +F VA +G+ G GY WI S ++
Sbjct: 177 MSLDDGDSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVA 233
Query: 261 TALDT-NSPFPS 271
DT S FP+
Sbjct: 234 GDTDTVPSEFPT 245
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 201 LSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLS 260
+S++ + +I + L K+ +S II+++ +F VA +G+ G GY WI S ++
Sbjct: 176 MSLDDGDSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVA 232
Query: 261 TALDT-NSPFPS 271
DT S FP+
Sbjct: 233 GDTDTVPSEFPT 244
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 52/290 (17%), Positives = 110/290 (37%), Gaps = 23/290 (7%)
Query: 68 GTKLKLQMQD--CNHSGFLALAEALHLMEG-QTVAIIGPQDAVTSHVVSHVANELQVPLL 124
GT+ ++ +D C + +L + + G + I+GP + V+ +A+ +P+L
Sbjct: 53 GTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPML 112
Query: 125 SFSATDPTLSSL--QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182
S A ++ + R + + + H+ W +Y DD RN
Sbjct: 113 SAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYF 172
Query: 183 ALGDTLAAKRCRISFKAPLSVEATED-EITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241
L + + S + T+D ++ D++ + +E R++++ + + VA
Sbjct: 173 TLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASE-RVVIMCASSDTIRSIMLVA 231
Query: 242 QYLGMLGTGYVWIATSWLSTAL---------DTNSPFPSDVMDDIQGVLTLRTYTPDSVL 292
GM Y + +++ D + +Q V LRT P+
Sbjct: 232 HRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEF-- 289
Query: 293 KRKFISRWRNLTDAKTPN--GYIGLNAYGFYAYDTVWLLARAINSFFKQG 340
KF ++ + + N Y+ + GF +D + L A++ + G
Sbjct: 290 -EKFSMEVKSSVEKQGLNMEDYVNMFVEGF--HDAILLYVLALHEVLRAG 336
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 740 GGVAAVVDDRAYAELFLSTRCEFSIVGQV------FTKNGWGFAFPRDSPLAVDISTAIL 793
GGV AV+ D A A ++ + QV F +G FP++S L + A+
Sbjct: 188 GGVDAVITDNAVANEYVKNNPNKKL--QVIEDPKNFASEYYGMIFPKNSELKAKVDEALK 245
Query: 794 KLSENGDLQRIHDKWLLRSACSSQGAKLDVDRLQ 827
+ +G I+ KW G + +DRL+
Sbjct: 246 NVINSGKYTEIYKKWF--------GKEPKLDRLK 271
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/290 (17%), Positives = 110/290 (37%), Gaps = 23/290 (7%)
Query: 68 GTKLKLQMQD--CNHSGFLALAEALHLMEG-QTVAIIGPQDAVTSHVVSHVANELQVPLL 124
GT+ ++ +D C + +L + + G + I+GP + V+ +A+ +P+L
Sbjct: 96 GTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPML 155
Query: 125 SFSATDPTLS--SLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182
S A ++ + R + + + H+ W +Y DD RN
Sbjct: 156 SAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYF 215
Query: 183 ALGDTLAAKRCRISFKAPLSVEATED-EITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241
L + + S + T+D ++ D++ + +E R++++ + + VA
Sbjct: 216 TLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASE-RVVIMCASSDTIRSIMLVA 274
Query: 242 QYLGMLGTGYVWIATSWLSTAL---------DTNSPFPSDVMDDIQGVLTLRTYTPDSVL 292
GM Y + +++ D + +Q V LRT P+
Sbjct: 275 HRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEF-- 332
Query: 293 KRKFISRWRNLTDAKTPN--GYIGLNAYGFYAYDTVWLLARAINSFFKQG 340
KF ++ + + N Y+ + GF +D + L A++ + G
Sbjct: 333 -EKFSMEVKSSVEKQGLNMEDYVNMFVEGF--HDAILLYVLALHEVLRAG 379
>pdb|1B25|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B4N|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
Length = 619
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 679 KLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPH 738
KL I G+ Y +V S R Y V E N R + + + LK GPH
Sbjct: 507 KLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPH 566
Query: 739 KGGVAAVVDDRAYAELF 755
KG +D++ Y EL
Sbjct: 567 KG---EHLDEKKYDELL 580
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 52/290 (17%), Positives = 110/290 (37%), Gaps = 23/290 (7%)
Query: 68 GTKLKLQMQD--CNHSGFLALAEALHLMEG-QTVAIIGPQDAVTSHVVSHVANELQVPLL 124
GT+ ++ +D C + +L + + G + I+GP + V+ +A+ +P+L
Sbjct: 95 GTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPML 154
Query: 125 SFSATDPTLSSL--QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182
S A ++ + R + + + H+ W +Y DD RN
Sbjct: 155 SAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYF 214
Query: 183 ALGDTLAAKRCRISFKAPLSVEATED-EITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241
L + + S + T+D ++ D++ + +E R++++ + + VA
Sbjct: 215 TLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASE-RVVIMCASSDTIRSIMLVA 273
Query: 242 QYLGMLGTGYVWIATSWLSTAL---------DTNSPFPSDVMDDIQGVLTLRTYTPDSVL 292
GM Y + +++ D + +Q V LRT P+
Sbjct: 274 HRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEF-- 331
Query: 293 KRKFISRWRNLTDAKTPN--GYIGLNAYGFYAYDTVWLLARAINSFFKQG 340
KF ++ + + N Y+ + GF +D + L A++ + G
Sbjct: 332 -EKFSMEVKSSVEKQGLNMEDYVNMFVEGF--HDAILLYVLALHEVLRAG 378
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 744 AVVDDRAYAELFLST--RCEFSIVGQVFTKNGWGFAFPRDSPLAVD-ISTAILKLSENGD 800
AV+ D F+ T +F VG +G AFP+ S D ++ A+ L ENG
Sbjct: 153 AVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGT 212
Query: 801 LQRIHDKWL 809
I+ KW
Sbjct: 213 YNEIYKKWF 221
>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta
Length = 919
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 29/147 (19%)
Query: 277 IQGVLTLRTYTP-------DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLL 329
I+ V TL T +P + + +S WRN P+ IG N F D +LL
Sbjct: 290 IRNVFTLNTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNF---DIPYLL 346
Query: 330 ARA----INSF--------FKQGGNLSF-------SKDSRLSDIQGHLRLDSLRIFNGGN 370
RA +N F KQ S +++++ +I G L+LD L+
Sbjct: 347 NRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDLLQFIQREY 406
Query: 371 LLRDSILQANMTGTAGPARFNSHGDLI 397
LR L A G + + H +I
Sbjct: 407 KLRSYTLNAVSAHFLGEQKEDVHYSII 433
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 523 NNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVA 571
+N L+ + G +DA G I T R K DFT PY + + +A
Sbjct: 46 SNQPWDSLIPSLKLGKFDALFGGXNITTARQKEVDFTDPYYTNSVSFIA 94
>pdb|1USG|A Chain A, L-Leucine-Binding Protein, Apo Form
pdb|1USK|A Chain A, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|B Chain B, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|C Chain C, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|D Chain D, L-Leucine-Binding Protein With Leucine Bound
pdb|1USI|A Chain A, L-Leucine-Binding Protein With Phenylalanine Bound
pdb|1USI|C Chain C, L-Leucine-Binding Protein With Phenylalanine Bound
Length = 346
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 4/169 (2%)
Query: 31 VVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQD-CNHSGFLALAEA 89
V +GA+ G + + A+ D+N+ G + ++ D C+ +A+A
Sbjct: 5 VAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVAN- 63
Query: 90 LHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQ 149
++ +IG + ++ S + + + ++S AT+P L+ + + +RT D
Sbjct: 64 -KIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDS 122
Query: 150 YQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA-ALGDTLAAKRCRISF 197
Q A+ + + IAI D G+A ++ D L A + F
Sbjct: 123 SQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVF 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,914,534
Number of Sequences: 62578
Number of extensions: 1106709
Number of successful extensions: 2795
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2577
Number of HSP's gapped (non-prelim): 190
length of query: 940
length of database: 14,973,337
effective HSP length: 108
effective length of query: 832
effective length of database: 8,214,913
effective search space: 6834807616
effective search space used: 6834807616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)