Query 002301
Match_columns 940
No_of_seqs 494 out of 3915
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 20:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 3.1E-99 1E-103 939.6 60.2 765 30-862 1-814 (823)
2 3o21_A Glutamate receptor 3; p 100.0 1.6E-51 5.4E-56 463.2 38.8 372 29-425 3-379 (389)
3 4gpa_A Glutamate receptor 4; P 100.0 1.8E-49 6.3E-54 448.3 40.4 379 28-430 2-382 (389)
4 3om0_A Glutamate receptor, ion 100.0 7.6E-49 2.6E-53 443.3 35.6 374 30-426 3-381 (393)
5 3hsy_A Glutamate receptor 2; l 100.0 1.4E-48 4.9E-53 437.6 36.1 366 31-425 2-373 (376)
6 3h6g_A Glutamate receptor, ion 100.0 2.1E-48 7.1E-53 440.2 37.0 375 29-427 2-384 (395)
7 4f11_A Gamma-aminobutyric acid 100.0 9.2E-49 3.1E-53 448.8 34.2 389 27-457 10-424 (433)
8 3sm9_A Mglur3, metabotropic gl 100.0 9.5E-48 3.2E-52 442.8 37.6 371 27-418 9-462 (479)
9 2e4u_A Metabotropic glutamate 100.0 2.6E-47 9E-52 449.0 41.6 393 27-462 10-485 (555)
10 3saj_A Glutamate receptor 1; r 100.0 8.9E-48 3.1E-52 432.7 35.5 371 27-429 6-380 (384)
11 1jdp_A NPR-C, atrial natriuret 100.0 2.3E-47 7.9E-52 438.1 37.7 367 28-422 6-397 (441)
12 3ks9_A Mglur1, metabotropic gl 100.0 3.3E-47 1.1E-51 440.2 38.0 395 27-460 13-496 (496)
13 1dp4_A Atrial natriuretic pept 100.0 2E-47 6.8E-52 438.3 34.1 387 30-462 1-423 (435)
14 3qek_A NMDA glutamate receptor 100.0 7.7E-47 2.6E-51 425.4 33.5 340 28-419 2-369 (384)
15 3mq4_A Mglur7, metabotropic gl 100.0 1.3E-47 4.6E-52 442.9 27.5 373 27-418 12-467 (481)
16 3qel_B Glutamate [NMDA] recept 100.0 2.1E-41 7.1E-46 375.4 26.4 339 29-424 2-355 (364)
17 3i45_A Twin-arginine transloca 100.0 7.7E-39 2.6E-43 360.7 32.1 359 29-432 3-372 (387)
18 3h5l_A Putative branched-chain 100.0 8.1E-39 2.8E-43 364.6 26.1 345 28-411 11-388 (419)
19 4f06_A Extracellular ligand-bi 100.0 8.3E-38 2.8E-42 349.7 29.7 336 29-407 3-346 (371)
20 3ipc_A ABC transporter, substr 100.0 9.7E-38 3.3E-42 347.7 28.3 344 30-420 1-352 (356)
21 3td9_A Branched chain amino ac 100.0 3.2E-37 1.1E-41 344.8 29.1 342 27-420 12-363 (366)
22 4gnr_A ABC transporter substra 100.0 2.2E-36 7.7E-41 336.1 30.9 337 28-416 4-350 (353)
23 1usg_A Leucine-specific bindin 100.0 2E-36 6.7E-41 335.7 28.4 339 30-414 1-345 (346)
24 3hut_A Putative branched-chain 100.0 2.8E-36 9.5E-41 336.1 28.7 343 30-419 3-353 (358)
25 3lkb_A Probable branched-chain 100.0 1.1E-36 3.9E-41 343.7 24.0 351 29-423 5-378 (392)
26 3i09_A Periplasmic branched-ch 100.0 7.6E-36 2.6E-40 334.8 30.2 334 29-410 2-342 (375)
27 4evq_A Putative ABC transporte 100.0 1.3E-35 4.3E-40 333.2 30.1 345 28-420 13-364 (375)
28 3n0w_A ABC branched chain amin 100.0 1.2E-35 4.1E-40 333.7 29.1 335 29-410 4-346 (379)
29 3eaf_A ABC transporter, substr 100.0 1.6E-35 5.5E-40 334.0 29.9 351 29-421 2-373 (391)
30 4eyg_A Twin-arginine transloca 100.0 3.8E-35 1.3E-39 328.4 31.8 345 29-419 4-359 (368)
31 3n0x_A Possible substrate bind 100.0 1.4E-35 4.8E-40 332.3 27.3 331 30-409 3-347 (374)
32 3lop_A Substrate binding perip 100.0 2.3E-35 8E-40 329.4 28.1 339 29-412 3-354 (364)
33 3sg0_A Extracellular ligand-bi 100.0 1.7E-34 5.7E-39 325.4 22.1 342 29-414 25-385 (386)
34 1pea_A Amidase operon; gene re 100.0 3.3E-32 1.1E-36 306.2 32.1 346 29-417 5-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 1.1E-32 3.7E-37 307.6 23.9 341 28-414 4-361 (362)
36 1yae_A Glutamate receptor, ion 99.9 1.5E-27 5.1E-32 259.8 15.4 268 466-828 11-304 (312)
37 2h4a_A YRAM (HI1655); perplasm 99.9 2.7E-27 9.2E-32 256.1 17.1 307 33-414 2-317 (325)
38 3ckm_A YRAM (HI1655), LPOA; pe 99.9 2.2E-26 7.5E-31 252.0 18.9 314 31-417 2-322 (327)
39 3g3k_A Glutamate receptor, ion 99.9 2.4E-25 8.2E-30 235.4 16.6 232 466-815 2-258 (259)
40 1pb7_A N-methyl-D-aspartate re 99.9 1.6E-25 5.6E-30 240.7 13.1 236 468-816 41-292 (292)
41 2a5s_A N-methyl-D-aspartate re 99.9 6.7E-26 2.3E-30 242.9 9.3 238 464-815 25-283 (284)
42 2rc8_A Glutamate [NMDA] recept 99.9 1.4E-24 4.7E-29 234.0 14.3 215 491-815 67-293 (294)
43 4h5g_A Amino acid ABC superfam 99.9 2.6E-24 9E-29 225.0 16.0 219 468-810 12-237 (243)
44 4gvo_A LMO2349 protein; struct 99.9 3.6E-24 1.2E-28 223.9 13.7 222 466-810 7-235 (243)
45 3kzg_A Arginine 3RD transport 99.9 3.1E-23 1.1E-27 215.9 18.0 219 468-812 3-232 (237)
46 1mqi_A Glutamate receptor 2; G 99.9 4.5E-23 1.5E-27 218.4 18.4 230 467-815 3-262 (263)
47 2v3u_A Glutamate receptor delt 99.9 4.2E-23 1.4E-27 218.9 17.6 234 466-815 1-264 (265)
48 3i6v_A Periplasmic His/Glu/Gln 99.9 2.9E-23 1E-27 215.4 14.8 219 467-818 4-225 (232)
49 4f3p_A Glutamine-binding perip 99.9 1E-22 3.5E-27 213.7 16.9 222 465-812 21-244 (249)
50 3k4u_A Binding component of AB 99.9 1.2E-22 4.3E-27 212.5 16.9 224 467-812 4-230 (245)
51 3del_B Arginine binding protei 99.9 2.9E-22 9.8E-27 209.3 17.5 222 467-816 10-238 (242)
52 3hv1_A Polar amino acid ABC up 99.9 4.5E-22 1.5E-26 211.4 18.1 225 467-815 20-253 (268)
53 3kbr_A Cyclohexadienyl dehydra 99.9 1.9E-22 6.5E-27 210.2 13.9 221 467-810 14-237 (239)
54 3tql_A Arginine-binding protei 99.9 7.3E-22 2.5E-26 203.7 17.6 218 468-809 2-227 (227)
55 1ii5_A SLR1257 protein; membra 99.9 1.2E-21 4.2E-26 203.0 17.5 218 467-810 3-226 (233)
56 3h7m_A Sensor protein; histidi 99.9 2E-21 6.9E-26 201.5 17.2 219 466-810 9-230 (234)
57 4eq9_A ABC transporter substra 99.9 1.1E-21 3.7E-26 205.4 14.8 223 467-813 7-238 (246)
58 1lst_A Lysine, arginine, ornit 99.9 2.9E-21 9.8E-26 201.2 16.9 222 467-811 3-233 (239)
59 3mpk_A Virulence sensor protei 99.9 3E-21 1E-25 204.9 16.5 219 467-811 31-253 (267)
60 2y7i_A STM4351; arginine-bindi 99.9 7.3E-21 2.5E-25 196.6 17.9 218 466-810 4-228 (229)
61 4dz1_A DALS D-alanine transpor 99.9 6.8E-21 2.3E-25 201.1 17.3 222 466-810 27-253 (259)
62 1wdn_A GLNBP, glutamine bindin 99.9 6.4E-21 2.2E-25 196.5 16.4 217 468-810 3-222 (226)
63 2iee_A ORF2, probable ABC tran 99.8 4.3E-21 1.5E-25 204.2 10.5 220 467-813 20-250 (271)
64 2q88_A EHUB, putative ABC tran 99.8 2.3E-20 7.8E-25 196.8 15.8 221 467-809 12-239 (257)
65 2pyy_A Ionotropic glutamate re 99.8 2.2E-20 7.4E-25 192.8 14.8 218 468-810 3-222 (228)
66 3qax_A Probable ABC transporte 99.8 6E-20 2.1E-24 194.7 18.0 218 467-811 30-254 (268)
67 2pvu_A ARTJ; basic amino acid 99.8 9E-20 3.1E-24 194.0 17.7 219 466-810 40-262 (272)
68 4i62_A Amino acid ABC transpor 99.8 4.9E-20 1.7E-24 195.5 15.4 219 468-810 39-264 (269)
69 1xt8_A Putative amino-acid tra 99.8 1.2E-19 4.1E-24 195.3 15.5 217 468-810 44-265 (292)
70 2yjp_A Putative ABC transporte 99.8 1.2E-19 4.2E-24 195.0 15.3 217 468-810 55-276 (291)
71 2vha_A Periplasmic binding tra 99.8 2E-19 6.9E-24 193.0 16.1 221 467-811 16-249 (287)
72 2yln_A Putative ABC transporte 99.8 1.8E-19 6.3E-24 192.7 15.2 216 467-810 56-277 (283)
73 2v25_A Major cell-binding fact 99.7 1.8E-17 6E-22 174.6 11.3 213 468-809 38-258 (259)
74 3n5l_A Binding protein compone 98.7 4.8E-08 1.6E-12 104.8 11.8 214 468-809 4-242 (310)
75 3p7i_A PHND, subunit of alkylp 98.7 6E-08 2.1E-12 104.3 12.2 215 466-808 12-250 (321)
76 2ozz_A Hypothetical protein YH 98.7 2.2E-08 7.4E-13 99.9 7.4 182 489-809 27-223 (231)
77 2h3h_A Sugar ABC transporter, 98.3 4.5E-05 1.5E-09 81.8 22.4 198 32-246 2-206 (313)
78 3ksm_A ABC-type sugar transpor 98.2 5.4E-05 1.8E-09 79.4 20.1 199 32-246 1-211 (276)
79 3brq_A HTH-type transcriptiona 98.2 3.2E-05 1.1E-09 82.1 18.1 205 30-252 18-230 (296)
80 2qu7_A Putative transcriptiona 98.2 2E-05 6.7E-10 83.5 15.3 204 29-252 6-217 (288)
81 3d02_A Putative LACI-type tran 98.2 0.00018 6.3E-09 76.5 22.7 202 30-247 3-214 (303)
82 1dbq_A Purine repressor; trans 98.1 7.1E-05 2.4E-09 79.1 19.0 205 30-251 6-216 (289)
83 3brs_A Periplasmic binding pro 98.1 0.00013 4.3E-09 77.2 20.3 201 31-247 5-215 (289)
84 3rot_A ABC sugar transporter, 98.1 7.1E-05 2.4E-09 79.6 17.9 205 31-249 3-215 (297)
85 1tjy_A Sugar transport protein 98.1 0.00032 1.1E-08 75.2 22.3 204 33-255 5-220 (316)
86 2rjo_A Twin-arginine transloca 98.1 0.00032 1.1E-08 75.8 22.1 204 31-247 5-222 (332)
87 2qh8_A Uncharacterized protein 98.0 0.00013 4.5E-09 77.7 17.9 186 30-229 7-201 (302)
88 2x7x_A Sensor protein; transfe 98.0 0.00028 9.5E-09 76.0 20.4 200 30-246 5-212 (325)
89 3c3k_A Alanine racemase; struc 98.0 0.00022 7.5E-09 75.2 19.0 202 30-254 7-216 (285)
90 3gbv_A Putative LACI-family tr 98.0 0.00022 7.6E-09 75.8 19.1 213 29-257 6-232 (304)
91 3l49_A ABC sugar (ribose) tran 98.0 0.00018 6.2E-09 76.0 18.0 199 31-247 5-216 (291)
92 2fn9_A Ribose ABC transporter, 98.0 0.00038 1.3E-08 73.5 20.4 197 32-246 3-215 (290)
93 2fvy_A D-galactose-binding per 98.0 0.00038 1.3E-08 74.2 20.3 204 32-245 3-226 (309)
94 3o1i_D Periplasmic protein TOR 98.0 0.00015 5.2E-09 77.2 16.9 205 30-247 4-218 (304)
95 2iks_A DNA-binding transcripti 98.0 0.00038 1.3E-08 73.6 19.9 206 30-254 19-229 (293)
96 3lkv_A Uncharacterized conserv 97.9 0.00019 6.6E-09 76.3 17.4 189 28-230 5-202 (302)
97 2h0a_A TTHA0807, transcription 97.9 4.5E-05 1.6E-09 80.0 12.2 203 33-255 1-213 (276)
98 3d8u_A PURR transcriptional re 97.9 0.00035 1.2E-08 73.1 18.6 205 31-254 3-213 (275)
99 3clk_A Transcription regulator 97.9 0.00011 3.7E-09 77.9 14.6 203 30-250 7-213 (290)
100 3g1w_A Sugar ABC transporter; 97.9 0.00084 2.9E-08 71.4 21.8 211 31-257 4-221 (305)
101 2fep_A Catabolite control prot 97.9 0.00031 1E-08 74.2 17.7 205 29-251 14-224 (289)
102 2o20_A Catabolite control prot 97.9 0.00026 9E-09 76.5 17.4 207 30-254 62-271 (332)
103 2vk2_A YTFQ, ABC transporter p 97.9 0.00036 1.2E-08 74.4 18.2 205 31-250 2-219 (306)
104 3h75_A Periplasmic sugar-bindi 97.9 0.00096 3.3E-08 72.6 21.9 208 31-250 3-233 (350)
105 2ioy_A Periplasmic sugar-bindi 97.9 0.0013 4.4E-08 69.2 22.2 196 33-246 3-207 (283)
106 3dbi_A Sugar-binding transcrip 97.9 0.00038 1.3E-08 75.5 18.3 208 30-254 60-274 (338)
107 2rgy_A Transcriptional regulat 97.9 0.00018 6.3E-09 76.0 15.4 205 30-252 7-219 (290)
108 3lft_A Uncharacterized protein 97.8 0.00064 2.2E-08 72.0 19.3 200 31-246 2-210 (295)
109 3k4h_A Putative transcriptiona 97.8 0.00044 1.5E-08 73.1 17.9 206 30-252 7-222 (292)
110 1qpz_A PURA, protein (purine n 97.8 0.00072 2.5E-08 73.3 20.0 207 31-254 58-270 (340)
111 3bbl_A Regulatory protein of L 97.8 0.00027 9.3E-09 74.6 16.0 203 31-251 4-217 (287)
112 3l6u_A ABC-type sugar transpor 97.8 0.00096 3.3E-08 70.4 20.2 200 30-247 7-220 (293)
113 2hsg_A Glucose-resistance amyl 97.8 0.0002 6.9E-09 77.4 15.1 205 29-251 58-268 (332)
114 3o74_A Fructose transport syst 97.8 0.00072 2.5E-08 70.5 18.7 206 32-257 3-215 (272)
115 1jx6_A LUXP protein; protein-l 97.8 0.00087 3E-08 72.6 19.7 208 28-246 40-258 (342)
116 8abp_A L-arabinose-binding pro 97.8 0.00085 2.9E-08 71.4 19.2 214 31-257 2-232 (306)
117 3ctp_A Periplasmic binding pro 97.7 0.00026 9E-09 76.4 14.0 201 30-254 59-263 (330)
118 3gv0_A Transcriptional regulat 97.7 0.00087 3E-08 70.7 17.4 205 30-252 7-218 (288)
119 3gyb_A Transcriptional regulat 97.7 0.00018 6.1E-09 75.7 11.7 200 30-252 4-206 (280)
120 3jy6_A Transcriptional regulat 97.6 0.0024 8.3E-08 66.7 19.6 204 30-255 6-214 (276)
121 2x26_A Periplasmic aliphatic s 97.6 0.00027 9.2E-09 75.5 12.1 122 682-810 95-232 (308)
122 2f5x_A BUGD; periplasmic bindi 97.6 0.00045 1.5E-08 73.3 13.4 121 682-808 121-275 (312)
123 3m9w_A D-xylose-binding peripl 97.6 0.0026 8.9E-08 67.9 19.6 200 31-247 2-213 (313)
124 3uif_A Sulfonate ABC transport 97.6 0.00024 8.1E-09 77.4 11.3 106 682-794 109-227 (348)
125 3hcw_A Maltose operon transcri 97.6 0.0036 1.2E-07 66.1 20.2 206 30-254 6-224 (295)
126 3egc_A Putative ribose operon 97.6 0.0006 2.1E-08 72.0 14.0 207 30-254 7-218 (291)
127 3kjx_A Transcriptional regulat 97.6 0.0014 4.7E-08 71.2 16.9 209 29-255 66-280 (344)
128 3k9c_A Transcriptional regulat 97.6 0.0032 1.1E-07 66.2 19.3 204 30-254 11-217 (289)
129 3qk7_A Transcriptional regulat 97.5 0.0014 5E-08 69.2 16.2 203 31-252 6-217 (294)
130 3ksx_A Nitrate transport prote 97.5 0.00054 1.8E-08 73.7 12.9 93 682-781 121-219 (324)
131 3tb6_A Arabinose metabolism tr 97.5 0.002 6.9E-08 68.1 17.1 207 32-255 16-234 (298)
132 3g85_A Transcriptional regulat 97.5 0.00079 2.7E-08 71.0 13.7 206 29-254 9-220 (289)
133 2qpq_A Protein BUG27; alpha/be 97.5 0.00076 2.6E-08 71.2 13.4 121 682-808 112-266 (301)
134 3un6_A Hypothetical protein sa 97.5 0.00012 4.1E-09 79.5 7.4 122 682-810 143-283 (341)
135 3qsl_A Putative exported prote 97.5 0.0005 1.7E-08 74.6 12.4 137 504-759 59-205 (346)
136 2dvz_A BUGE, putative exported 97.5 0.00058 2E-08 72.4 12.3 122 682-808 125-279 (314)
137 3kke_A LACI family transcripti 97.5 0.0028 9.5E-08 67.3 17.3 201 30-250 14-225 (303)
138 3bil_A Probable LACI-family tr 97.4 0.0038 1.3E-07 67.8 18.1 204 30-253 65-272 (348)
139 3e3m_A Transcriptional regulat 97.4 0.0072 2.5E-07 65.7 20.4 207 31-255 70-283 (355)
140 2dri_A D-ribose-binding protei 97.4 0.013 4.5E-07 60.8 21.0 196 33-246 3-206 (271)
141 3cs3_A Sugar-binding transcrip 97.3 0.0059 2E-07 63.7 17.5 198 30-255 7-210 (277)
142 1byk_A Protein (trehalose oper 97.3 0.01 3.5E-07 60.9 18.8 189 33-246 4-196 (255)
143 3e61_A Putative transcriptiona 97.3 0.0025 8.7E-08 66.5 14.2 200 30-255 7-210 (277)
144 3ix1_A N-formyl-4-amino-5-amin 97.3 0.00062 2.1E-08 72.4 9.5 78 489-574 14-95 (302)
145 3h5o_A Transcriptional regulat 97.3 0.0063 2.2E-07 65.7 17.7 204 30-255 61-272 (339)
146 3uug_A Multiple sugar-binding 97.3 0.0049 1.7E-07 66.2 16.6 205 31-250 3-232 (330)
147 1gud_A ALBP, D-allose-binding 97.2 0.029 9.9E-07 58.8 22.1 211 33-256 3-226 (288)
148 4fe7_A Xylose operon regulator 97.2 0.014 4.8E-07 64.8 19.4 207 28-254 22-235 (412)
149 3hs3_A Ribose operon repressor 97.1 0.0059 2E-07 63.7 15.2 197 29-255 8-211 (277)
150 3jvd_A Transcriptional regulat 97.1 0.014 4.6E-07 62.9 18.2 195 30-252 63-261 (333)
151 3huu_A Transcription regulator 97.1 0.0083 2.8E-07 63.6 16.2 200 30-251 21-231 (305)
152 3s99_A Basic membrane lipoprot 97.1 0.045 1.5E-06 59.0 21.4 201 27-246 22-230 (356)
153 2fqx_A Membrane lipoprotein TM 97.0 0.037 1.3E-06 58.9 20.6 206 30-255 3-220 (318)
154 1jye_A Lactose operon represso 97.0 0.031 1.1E-06 60.4 19.8 204 30-255 60-271 (349)
155 2hqb_A Transcriptional activat 96.9 0.12 4.2E-06 54.2 22.8 193 31-245 5-204 (296)
156 3miz_A Putative transcriptiona 96.8 0.0021 7.3E-08 68.1 8.6 203 30-252 12-227 (301)
157 2k1e_A Water soluble analogue 96.5 0.0019 6.5E-08 55.8 4.5 78 598-679 18-97 (103)
158 4ddd_A Immunogenic protein; ss 96.5 0.0041 1.4E-07 66.7 8.0 62 682-749 136-203 (327)
159 2x7q_A Ca3427, possible thiami 96.5 0.011 3.8E-07 63.1 10.9 91 682-781 110-210 (321)
160 3qi7_A Putative transcriptiona 96.2 0.13 4.6E-06 54.7 17.1 216 30-249 11-252 (371)
161 3h5t_A Transcriptional regulat 96.1 0.08 2.8E-06 57.5 15.7 206 30-250 67-296 (366)
162 2g29_A Nitrate transport prote 95.6 0.023 7.7E-07 63.2 8.4 103 688-797 151-272 (417)
163 3jv9_A OXYR, transcriptional r 95.5 0.12 4.1E-06 50.8 13.0 83 468-575 4-86 (219)
164 2ih3_C Voltage-gated potassium 95.5 0.0088 3E-07 53.4 3.8 75 600-678 41-117 (122)
165 3ixl_A Amdase, arylmalonate de 95.4 0.24 8.2E-06 49.9 14.4 126 87-240 57-199 (240)
166 3eff_K Voltage-gated potassium 95.3 0.016 5.3E-07 53.2 4.8 72 602-677 22-95 (139)
167 4ab5_A Transcriptional regulat 95.2 0.13 4.5E-06 50.7 11.9 83 468-575 8-90 (222)
168 3ho7_A OXYR; beta-alpha-barrel 95.0 0.091 3.1E-06 52.4 10.1 83 468-575 11-93 (232)
169 2a9h_A Voltage-gated potassium 95.0 0.017 5.8E-07 53.8 4.2 76 601-680 65-142 (155)
170 3oxn_A Putative transcriptiona 94.8 0.5 1.7E-05 47.3 15.2 84 467-575 18-101 (241)
171 1zbm_A Hypothetical protein AF 94.5 0.02 6.9E-07 59.7 3.8 99 688-798 99-210 (280)
172 4h33_A LMO2059 protein; bilaye 93.6 0.046 1.6E-06 49.8 3.7 56 623-678 42-99 (137)
173 1us5_A Putative GLUR0 ligand b 93.5 0.16 5.5E-06 53.7 8.5 61 682-748 121-187 (314)
174 3fzv_A Probable transcriptiona 92.9 0.59 2E-05 48.8 11.9 83 468-575 95-178 (306)
175 3pjs_K KCSA, voltage-gated pot 92.1 0.011 3.9E-07 55.9 -2.7 59 620-678 63-123 (166)
176 4esw_A Pyrimidine biosynthesis 91.6 0.54 1.8E-05 50.4 9.6 66 682-754 101-169 (342)
177 1i6a_A OXYR, hydrogen peroxide 91.4 0.24 8.2E-06 48.9 6.2 83 468-575 5-87 (219)
178 2zzv_A ABC transporter, solute 91.3 0.69 2.4E-05 49.9 10.1 59 682-752 164-222 (361)
179 3ldc_A Calcium-gated potassium 91.0 0.17 5.8E-06 41.2 3.7 52 624-675 28-81 (82)
180 2hxr_A HTH-type transcriptiona 90.7 3.8 0.00013 40.4 14.6 83 468-575 30-112 (238)
181 3ouf_A Potassium channel prote 90.7 0.095 3.2E-06 44.4 1.9 58 624-681 32-91 (97)
182 2ql3_A Probable transcriptiona 90.6 2 6.8E-05 41.5 12.1 83 468-575 5-87 (209)
183 2esn_A Probable transcriptiona 90.6 3 0.0001 43.3 14.3 83 468-575 101-186 (310)
184 2xed_A Putative maleate isomer 90.6 3.3 0.00011 42.4 14.0 125 88-240 82-227 (273)
185 1atg_A MODA, periplasmic molyb 90.5 0.71 2.4E-05 45.6 8.7 71 496-575 14-90 (231)
186 4gx0_A TRKA domain protein; me 90.4 0.29 9.9E-06 56.6 6.5 125 624-753 51-183 (565)
187 1p7b_A Integral membrane chann 90.2 0.21 7.3E-06 52.6 4.6 62 618-679 90-153 (333)
188 2fyi_A HTH-type transcriptiona 89.9 3.4 0.00012 40.6 13.3 84 468-575 14-97 (228)
189 2y7p_A LYSR-type regulatory pr 89.6 3 0.0001 40.8 12.5 84 467-575 7-90 (218)
190 2i49_A Bicarbonate transporter 89.6 0.91 3.1E-05 50.2 9.3 106 687-797 153-280 (429)
191 2q67_A Potassium channel prote 89.6 0.22 7.4E-06 43.6 3.3 55 624-678 49-105 (114)
192 3r26_A Molybdate-binding perip 89.4 2.6 8.8E-05 42.2 11.9 70 497-575 22-97 (237)
193 1xl4_A Inward rectifier potass 88.8 0.32 1.1E-05 50.6 4.6 61 618-678 76-138 (301)
194 1lnq_A MTHK channels, potassiu 88.7 0.17 5.9E-06 54.1 2.6 124 624-756 45-171 (336)
195 3fxq_A LYSR type regulator of 88.6 2.7 9.1E-05 43.7 11.8 85 468-575 92-176 (305)
196 1sw5_A Osmoprotection protein 88.6 1.3 4.3E-05 45.7 9.0 106 683-796 124-238 (275)
197 3gzg_A Molybdate-binding perip 88.4 1.9 6.4E-05 43.8 10.0 70 497-575 38-113 (253)
198 3vou_A ION transport 2 domain 88.0 0.38 1.3E-05 44.3 4.0 54 624-677 52-107 (148)
199 1al3_A Cys regulon transcripti 87.5 7.9 0.00027 40.5 14.8 206 468-810 93-305 (324)
200 2pfz_A Putative exported prote 87.4 2.9 9.9E-05 43.6 11.1 56 682-749 128-183 (301)
201 1ixc_A CBNR, LYSR-type regulat 87.3 5.2 0.00018 41.0 13.0 83 468-575 91-173 (294)
202 2hzl_A Trap-T family sorbitol/ 87.1 1.4 4.8E-05 47.5 8.6 87 682-781 163-252 (365)
203 1orq_C Potassium channel; volt 86.9 0.41 1.4E-05 47.7 3.9 73 601-677 146-220 (223)
204 2de3_A Dibenzothiophene desulf 86.8 1.4 4.6E-05 47.6 8.3 120 682-810 109-299 (365)
205 2fqx_A Membrane lipoprotein TM 86.0 11 0.00037 39.5 14.8 126 33-165 131-264 (318)
206 2dgd_A 223AA long hypothetical 85.6 8.5 0.00029 37.9 12.9 86 152-240 96-190 (223)
207 2pfy_A Putative exported prote 85.5 3.7 0.00013 42.8 10.6 56 682-749 129-184 (301)
208 3s99_A Basic membrane lipoprot 85.3 3.3 0.00011 44.3 10.2 90 32-130 150-239 (356)
209 2h9b_A HTH-type transcriptiona 84.8 13 0.00045 38.4 14.8 82 469-575 91-172 (312)
210 1twy_A ABC transporter, peripl 83.6 16 0.00053 37.1 14.6 71 495-575 41-113 (290)
211 2h98_A HTH-type transcriptiona 83.2 24 0.00081 36.6 15.9 82 469-575 91-172 (313)
212 1uth_A LYSR-type regulatory pr 82.4 7.3 0.00025 40.5 11.5 83 468-575 105-187 (315)
213 3beh_A MLL3241 protein; transm 82.3 0.46 1.6E-05 51.3 1.9 75 599-677 140-216 (355)
214 2hqb_A Transcriptional activat 81.4 17 0.00058 37.5 13.7 121 33-166 128-248 (296)
215 2qks_A KIR3.1-prokaryotic KIR 81.3 1.1 3.9E-05 46.9 4.4 56 624-679 78-135 (321)
216 2l82_A Designed protein OR32; 80.9 10 0.00034 31.3 8.8 97 141-246 4-104 (162)
217 3k6v_A Solute-binding protein 79.6 33 0.0011 36.3 15.3 69 498-575 59-133 (354)
218 2czl_A Hypothetical protein TT 78.6 1.4 4.8E-05 45.1 4.2 59 687-753 91-150 (272)
219 2r9r_B Paddle chimera voltage 77.1 2.1 7E-05 48.4 5.2 73 601-677 356-430 (514)
220 3hhf_B Transcriptional regulat 76.2 2.8 9.6E-05 40.4 5.4 80 468-575 7-86 (213)
221 1nh8_A ATP phosphoribosyltrans 76.0 5.8 0.0002 40.6 7.6 102 683-796 120-224 (304)
222 2rin_A Putative glycine betain 75.3 6.4 0.00022 40.9 8.0 58 466-545 5-62 (298)
223 3bfj_A 1,3-propanediol oxidore 74.8 6.9 0.00024 42.4 8.5 87 155-241 24-114 (387)
224 1r9l_A Glycine betaine-binding 74.5 7.5 0.00026 40.6 8.4 59 465-544 5-63 (309)
225 3ox4_A Alcohol dehydrogenase 2 72.9 4 0.00014 44.1 5.9 90 153-242 20-111 (383)
226 1jfl_A Aspartate racemase; alp 72.8 15 0.00052 36.1 9.9 38 87-125 65-102 (228)
227 2eq5_A 228AA long hypothetical 72.8 20 0.00069 35.2 10.8 111 89-231 68-184 (228)
228 2hpg_A ABC transporter, peripl 71.8 2.4 8.3E-05 44.8 3.8 88 682-781 148-236 (327)
229 3cfx_A UPF0100 protein MA_0280 70.8 67 0.0023 32.8 14.8 70 497-575 20-95 (296)
230 3hn0_A Nitrate transport prote 70.6 4.7 0.00016 41.5 5.7 61 694-759 96-161 (283)
231 3cij_A UPF0100 protein AF_0094 70.5 76 0.0026 32.3 15.1 70 497-575 20-95 (295)
232 2klu_A T-cell surface glycopro 68.5 12 0.00039 28.1 5.5 10 873-882 43-52 (70)
233 2q5c_A NTRC family transcripti 68.2 84 0.0029 29.9 20.5 158 32-247 5-162 (196)
234 3cfz_A UPF0100 protein MJ1186; 68.2 53 0.0018 33.5 13.3 71 496-575 19-95 (292)
235 2pju_A Propionate catabolism o 66.7 85 0.0029 30.6 13.4 128 80-247 46-174 (225)
236 1vlj_A NADH-dependent butanol 65.5 13 0.00046 40.4 8.2 88 154-241 33-123 (407)
237 1rrm_A Lactaldehyde reductase; 65.3 7.5 0.00026 42.1 6.1 88 155-242 22-111 (386)
238 3m9w_A D-xylose-binding peripl 64.7 24 0.00081 36.4 9.9 79 165-246 3-84 (313)
239 3onm_A Transcriptional regulat 64.4 56 0.0019 31.6 12.2 81 468-575 27-107 (238)
240 3ukm_A Potassium channel subfa 64.0 2.7 9.2E-05 42.8 2.0 66 624-689 201-275 (280)
241 2xxp_A CPS2A; replication, pep 62.2 8.1 0.00028 41.8 5.5 80 667-757 13-98 (398)
242 3kos_A HTH-type transcriptiona 62.0 34 0.0012 32.6 9.9 104 685-795 96-203 (219)
243 3uhj_A Probable glycerol dehyd 61.3 9.3 0.00032 41.2 5.8 80 155-238 44-125 (387)
244 1xs5_A 29 kDa protein, membran 61.1 88 0.003 30.9 12.7 36 500-543 21-56 (241)
245 2xwv_A Sialic acid-binding per 61.0 38 0.0013 35.2 10.4 60 682-752 133-192 (312)
246 3l6g_A Betaine ABC transporter 60.6 26 0.00089 35.2 8.8 42 495-545 16-57 (256)
247 1o2d_A Alcohol dehydrogenase, 60.4 17 0.00059 38.9 7.8 99 139-241 19-120 (371)
248 2zsk_A PH1733, 226AA long hypo 59.7 39 0.0013 33.1 9.8 77 91-196 68-144 (226)
249 3szp_A Transcriptional regulat 59.6 3.6 0.00012 42.1 2.2 71 719-795 213-285 (291)
250 4a8p_A Putrescine carbamoyltra 59.0 1.1E+02 0.0036 32.3 13.1 132 32-199 42-184 (355)
251 2hxw_A Major antigenic peptide 58.3 19 0.00066 35.3 7.4 40 497-546 16-55 (237)
252 4edp_A ABC transporter, substr 57.3 99 0.0034 32.0 13.3 80 723-806 216-297 (351)
253 3g1w_A Sugar ABC transporter; 57.3 25 0.00085 36.1 8.3 80 165-246 5-87 (305)
254 2l69_A Rossmann 2X3 fold prote 56.3 75 0.0026 25.3 8.9 49 145-196 57-105 (134)
255 3jy6_A Transcriptional regulat 56.1 35 0.0012 34.4 9.0 78 164-246 7-86 (276)
256 3fd3_A Chromosome replication 55.6 57 0.002 30.4 10.2 69 493-574 14-82 (208)
257 2qsx_A Putative transcriptiona 55.0 91 0.0031 29.7 11.7 70 720-795 139-210 (218)
258 1h3d_A ATP-phosphoribosyltrans 55.0 37 0.0013 34.7 8.6 102 683-797 115-219 (299)
259 4a8t_A Putrescine carbamoyltra 54.8 1E+02 0.0035 32.2 12.1 132 32-199 64-206 (339)
260 3tb6_A Arabinose metabolism tr 54.7 47 0.0016 33.6 9.9 79 165-246 16-100 (298)
261 3isp_A HTH-type transcriptiona 54.6 67 0.0023 32.6 11.1 46 525-574 127-172 (303)
262 3o74_A Fructose transport syst 54.3 24 0.00081 35.4 7.4 79 165-246 3-83 (272)
263 3s81_A Putative aspartate race 54.1 25 0.00085 35.6 7.2 39 86-125 89-127 (268)
264 3tmg_A Glycine betaine, L-prol 53.9 75 0.0026 32.2 11.0 57 467-545 15-71 (280)
265 3k9c_A Transcriptional regulat 53.9 94 0.0032 31.3 12.1 116 33-159 128-251 (289)
266 2gzm_A Glutamate racemase; enz 53.1 49 0.0017 33.4 9.4 38 88-125 57-94 (267)
267 3l6u_A ABC-type sugar transpor 53.0 38 0.0013 34.3 8.8 81 163-246 7-90 (293)
268 3lr1_A Tungstate ABC transport 51.7 10 0.00035 37.6 3.8 75 493-576 18-95 (236)
269 2dwu_A Glutamate racemase; iso 51.5 1.1E+02 0.0036 31.0 11.7 125 87-239 60-199 (276)
270 3ce9_A Glycerol dehydrogenase; 51.2 28 0.00096 36.9 7.5 96 155-258 25-122 (354)
271 3dbi_A Sugar-binding transcrip 51.2 54 0.0019 34.1 9.9 88 156-246 53-144 (338)
272 1mkz_A Molybdenum cofactor bio 51.0 70 0.0024 29.7 9.4 66 163-230 9-78 (172)
273 1jq5_A Glycerol dehydrogenase; 50.6 22 0.00077 38.0 6.7 95 155-257 23-119 (370)
274 3gbv_A Putative LACI-family tr 50.5 52 0.0018 33.4 9.4 84 163-246 7-95 (304)
275 2oho_A Glutamate racemase; iso 50.1 40 0.0014 34.2 8.2 38 88-125 66-103 (273)
276 3l49_A ABC sugar (ribose) tran 50.1 32 0.0011 34.8 7.7 79 165-246 6-87 (291)
277 3uug_A Multiple sugar-binding 49.8 41 0.0014 34.9 8.6 79 165-246 4-85 (330)
278 3gd5_A Otcase, ornithine carba 49.2 1.6E+02 0.0055 30.4 12.4 132 32-199 49-188 (323)
279 3tpf_A Otcase, ornithine carba 49.0 1.5E+02 0.005 30.5 12.1 132 32-199 37-177 (307)
280 3ksm_A ABC-type sugar transpor 48.3 38 0.0013 33.9 7.8 121 30-159 126-254 (276)
281 8abp_A L-arabinose-binding pro 47.8 46 0.0016 33.9 8.5 78 165-246 3-83 (306)
282 3h75_A Periplasmic sugar-bindi 47.7 40 0.0014 35.4 8.1 80 164-246 3-87 (350)
283 2fn9_A Ribose ABC transporter, 47.3 48 0.0016 33.5 8.5 79 165-246 3-84 (290)
284 4euo_A ABC transporter, substr 47.0 2.4E+02 0.0081 28.7 14.1 83 720-807 176-258 (320)
285 4ep1_A Otcase, ornithine carba 47.0 1.4E+02 0.0047 31.2 11.6 132 32-199 71-210 (340)
286 3brq_A HTH-type transcriptiona 47.0 75 0.0026 32.0 10.0 84 159-246 14-102 (296)
287 3kke_A LACI family transcripti 47.0 46 0.0016 34.0 8.3 86 157-246 8-95 (303)
288 3muq_A Uncharacterized conserv 46.7 13 0.00044 37.0 3.6 75 493-576 18-95 (237)
289 3grf_A Ornithine carbamoyltran 46.2 2.2E+02 0.0075 29.5 13.0 132 32-199 45-193 (328)
290 1tjy_A Sugar transport protein 45.9 38 0.0013 35.0 7.5 80 165-246 4-86 (316)
291 4dik_A Flavoprotein; TM0755, e 45.8 58 0.002 35.2 9.0 92 164-260 265-364 (410)
292 3gyb_A Transcriptional regulat 45.7 50 0.0017 33.1 8.3 115 33-159 120-242 (280)
293 3rot_A ABC sugar transporter, 45.6 40 0.0014 34.4 7.6 81 165-246 4-87 (297)
294 2fep_A Catabolite control prot 42.9 68 0.0023 32.4 8.8 79 164-246 16-96 (289)
295 2iks_A DNA-binding transcripti 42.4 37 0.0013 34.5 6.6 84 159-245 15-100 (293)
296 3huu_A Transcription regulator 42.3 36 0.0012 34.9 6.6 87 156-246 14-107 (305)
297 2vd3_A ATP phosphoribosyltrans 42.2 22 0.00076 36.1 4.6 101 683-796 105-208 (289)
298 3k4h_A Putative transcriptiona 41.0 54 0.0019 33.1 7.7 80 163-246 7-93 (292)
299 3ist_A Glutamate racemase; str 40.8 1.2E+02 0.0041 30.5 9.9 59 66-125 28-96 (269)
300 3kjx_A Transcriptional regulat 40.7 1.1E+02 0.0039 31.6 10.4 78 165-246 69-148 (344)
301 1duv_G Octase-1, ornithine tra 40.3 2.4E+02 0.0082 29.2 12.2 133 32-199 45-187 (333)
302 3h5o_A Transcriptional regulat 40.1 1E+02 0.0035 32.0 9.9 84 159-246 57-142 (339)
303 2fvy_A D-galactose-binding per 40.0 74 0.0025 32.3 8.6 79 165-246 3-85 (309)
304 1jx6_A LUXP protein; protein-l 39.8 81 0.0028 32.7 9.0 82 165-246 44-129 (342)
305 3hl0_A Maleylacetate reductase 39.5 46 0.0016 35.2 6.8 81 154-238 24-106 (353)
306 3p6l_A Sugar phosphate isomera 39.3 1E+02 0.0035 30.5 9.4 93 153-246 25-129 (262)
307 3um7_A Potassium channel subfa 39.3 16 0.00055 37.7 3.1 53 624-676 224-284 (309)
308 3d02_A Putative LACI-type tran 38.4 63 0.0022 32.8 7.8 80 165-246 5-87 (303)
309 2ioy_A Periplasmic sugar-bindi 38.3 78 0.0027 31.8 8.3 79 165-246 2-83 (283)
310 3cg1_A UPF0100 protein PF0080; 38.1 2.3E+02 0.0078 28.5 12.0 72 497-575 20-100 (296)
311 2b4l_A Glycine betaine-binding 38.0 48 0.0017 33.5 6.5 58 466-545 163-220 (268)
312 3lmz_A Putative sugar isomeras 37.7 85 0.0029 31.1 8.4 94 153-247 33-128 (257)
313 3e61_A Putative transcriptiona 37.7 65 0.0022 32.2 7.6 77 164-246 8-87 (277)
314 3um7_A Potassium channel subfa 37.7 8 0.00027 40.0 0.5 52 624-675 115-168 (309)
315 2h3h_A Sugar ABC transporter, 37.6 76 0.0026 32.4 8.3 79 166-246 3-83 (313)
316 1pvv_A Otcase, ornithine carba 37.5 3.6E+02 0.012 27.7 13.8 132 32-199 47-186 (315)
317 2l69_A Rossmann 2X3 fold prote 37.2 1.5E+02 0.0052 23.6 7.6 91 138-236 25-115 (134)
318 2pjk_A 178AA long hypothetical 37.0 1.1E+02 0.0038 28.5 8.3 67 162-230 13-90 (178)
319 3uhf_A Glutamate racemase; str 37.0 3.1E+02 0.011 27.5 12.3 59 66-125 47-115 (274)
320 3hcw_A Maltose operon transcri 37.0 2.6E+02 0.0089 27.9 12.2 114 33-159 133-258 (295)
321 1vlv_A Otcase, ornithine carba 36.8 2.5E+02 0.0087 28.9 11.7 133 32-199 59-199 (325)
322 2dri_A D-ribose-binding protei 35.6 96 0.0033 30.8 8.4 79 165-246 2-83 (271)
323 3jvd_A Transcriptional regulat 35.5 3.7E+02 0.012 27.5 13.3 116 32-160 175-298 (333)
324 3r7f_A Aspartate carbamoyltran 35.4 1.3E+02 0.0044 30.9 9.0 134 32-198 37-179 (304)
325 2jfn_A Glutamate racemase; cel 35.2 1.3E+02 0.0043 30.6 9.2 35 91-125 78-113 (285)
326 3egc_A Putative ribose operon 35.1 51 0.0018 33.3 6.3 80 163-246 7-88 (291)
327 2i6u_A Otcase, ornithine carba 34.9 3.6E+02 0.012 27.5 12.4 133 32-199 40-180 (307)
328 1ccw_A Protein (glutamate muta 34.9 1.8E+02 0.006 25.7 9.0 84 166-256 5-92 (137)
329 1y5e_A Molybdenum cofactor bio 34.7 1.5E+02 0.005 27.3 8.8 68 162-231 11-82 (169)
330 1b73_A Glutamate racemase; iso 34.7 1.1E+02 0.0038 30.4 8.6 125 87-239 53-189 (254)
331 3rfq_A Pterin-4-alpha-carbinol 34.7 86 0.0029 29.5 7.1 66 163-230 29-98 (185)
332 2is8_A Molybdopterin biosynthe 34.4 1E+02 0.0036 28.2 7.6 63 166-230 3-71 (164)
333 1oth_A Protein (ornithine tran 34.3 2.6E+02 0.0089 28.8 11.3 132 32-199 47-186 (321)
334 3brs_A Periplasmic binding pro 33.8 3.6E+02 0.012 26.6 12.9 117 33-159 133-257 (289)
335 3jzd_A Iron-containing alcohol 33.7 58 0.002 34.5 6.5 96 153-257 25-122 (358)
336 3gv0_A Transcriptional regulat 33.5 87 0.003 31.5 7.8 80 163-246 7-90 (288)
337 3d8u_A PURR transcriptional re 33.2 87 0.003 31.1 7.7 78 165-246 4-83 (275)
338 2yxb_A Coenzyme B12-dependent 33.0 2E+02 0.0069 26.2 9.3 86 164-256 18-107 (161)
339 1zuw_A Glutamate racemase 1; ( 32.9 1.5E+02 0.0051 29.8 9.2 40 86-125 55-95 (272)
340 3e3m_A Transcriptional regulat 32.7 1.3E+02 0.0044 31.4 9.2 84 159-246 65-150 (355)
341 2rgy_A Transcriptional regulat 32.4 79 0.0027 31.9 7.3 79 164-246 8-91 (290)
342 1ta9_A Glycerol dehydrogenase; 31.9 51 0.0017 36.2 5.8 95 155-257 82-178 (450)
343 2jfq_A Glutamate racemase; cel 31.8 1.3E+02 0.0045 30.5 8.6 38 88-125 76-113 (286)
344 3sya_A G protein-activated inw 31.6 33 0.0011 35.9 4.0 60 622-681 89-152 (340)
345 3guv_A Site-specific recombina 31.2 3E+02 0.01 24.9 10.4 23 207-229 59-83 (167)
346 2vk2_A YTFQ, ABC transporter p 31.2 95 0.0032 31.6 7.7 79 165-246 3-84 (306)
347 2fp4_A Succinyl-COA ligase [GD 30.9 4.4E+02 0.015 26.8 13.6 144 81-243 80-234 (305)
348 3cvg_A Putative metal binding 30.5 31 0.0011 35.4 3.6 73 494-575 33-115 (294)
349 3hs3_A Ribose operon repressor 29.9 92 0.0031 31.1 7.2 68 159-229 5-75 (277)
350 3dmy_A Protein FDRA; predicted 29.9 5.6E+02 0.019 28.1 13.6 78 164-245 112-198 (480)
351 3mz1_A Putative transcriptiona 29.9 59 0.002 32.6 5.8 71 719-795 215-287 (300)
352 3rvy_A ION transport protein; 29.8 19 0.00065 36.9 1.8 58 622-679 178-243 (285)
353 2jwa_A Receptor tyrosine-prote 29.7 70 0.0024 22.1 3.9 23 839-861 18-40 (44)
354 3cs3_A Sugar-binding transcrip 29.7 2.6E+02 0.0088 27.6 10.6 114 33-159 120-243 (277)
355 2o20_A Catabolite control prot 29.7 1.5E+02 0.005 30.6 8.9 81 162-246 61-143 (332)
356 4h31_A Otcase, ornithine carba 29.5 2.9E+02 0.0098 29.0 10.8 132 33-199 72-213 (358)
357 2rjo_A Twin-arginine transloca 28.8 79 0.0027 32.7 6.6 79 165-246 6-89 (332)
358 1oj7_A Hypothetical oxidoreduc 28.7 61 0.0021 35.1 5.7 83 155-241 43-128 (408)
359 1gud_A ALBP, D-allose-binding 28.7 1.3E+02 0.0044 30.2 8.1 81 165-246 2-85 (288)
360 2hsg_A Glucose-resistance amyl 28.6 1.2E+02 0.004 31.3 7.9 78 164-245 60-139 (332)
361 1p99_A Hypothetical protein PG 28.5 75 0.0026 32.5 6.1 36 500-543 56-91 (295)
362 3t6k_A Response regulator rece 28.5 1.9E+02 0.0064 24.8 8.2 56 180-244 16-73 (136)
363 2vvt_A Glutamate racemase; iso 28.4 1.3E+02 0.0043 30.8 7.7 39 87-125 77-115 (290)
364 2x7x_A Sensor protein; transfe 28.2 1.4E+02 0.0047 30.7 8.4 80 164-246 6-88 (325)
365 1jye_A Lactose operon represso 27.8 1.4E+02 0.0047 31.2 8.3 65 163-229 60-126 (349)
366 3ojc_A Putative aspartate/glut 27.8 68 0.0023 31.5 5.4 80 88-196 68-148 (231)
367 3ezx_A MMCP 1, monomethylamine 27.7 2.8E+02 0.0095 26.6 9.8 86 165-256 93-184 (215)
368 4ecf_A ABC-type phosphate tran 27.7 78 0.0027 31.7 6.0 71 495-575 17-91 (264)
369 3kn3_A Putative periplasmic pr 27.5 36 0.0012 33.7 3.3 74 493-575 18-94 (242)
370 3iwt_A 178AA long hypothetical 27.4 1.3E+02 0.0044 27.9 7.1 49 181-231 42-91 (178)
371 1js1_X Transcarbamylase; alpha 27.2 3.2E+02 0.011 28.2 10.4 136 32-199 37-203 (324)
372 3dnf_A ISPH, LYTB, 4-hydroxy-3 27.2 90 0.0031 31.7 6.1 52 73-124 186-239 (297)
373 4amu_A Ornithine carbamoyltran 27.0 1.8E+02 0.0061 30.7 8.6 132 32-199 72-212 (365)
374 1zq6_A Otcase, ornithine carba 27.0 3.1E+02 0.01 28.8 10.4 136 32-199 59-227 (359)
375 4gd5_A Phosphate ABC transport 26.9 77 0.0026 32.0 5.9 76 1-91 4-83 (279)
376 2qmw_A PDT, prephenate dehydra 26.9 1.1E+02 0.0037 30.8 6.6 83 695-783 4-97 (267)
377 2g2c_A Putative molybdenum cof 26.8 1.2E+02 0.0042 27.8 6.7 63 166-230 7-78 (167)
378 3kbq_A Protein TA0487; structu 26.8 2.3E+02 0.0077 26.2 8.4 62 166-230 5-71 (172)
379 3gt7_A Sensor protein; structu 26.6 3.2E+02 0.011 23.8 9.8 58 179-245 18-77 (154)
380 3c3k_A Alanine racemase; struc 26.6 1.5E+02 0.005 29.7 8.0 77 164-245 8-86 (285)
381 3i42_A Response regulator rece 26.6 2.8E+02 0.0094 23.1 9.8 57 179-244 14-72 (127)
382 2qh8_A Uncharacterized protein 26.4 2.2E+02 0.0076 28.7 9.5 111 32-159 141-254 (302)
383 3g85_A Transcriptional regulat 26.4 2E+02 0.0069 28.6 9.1 119 33-159 129-256 (289)
384 1y80_A Predicted cobalamin bin 26.2 2.2E+02 0.0075 27.1 8.8 86 165-256 89-178 (210)
385 3qk7_A Transcriptional regulat 26.0 1.2E+02 0.004 30.6 7.2 78 164-246 6-89 (294)
386 3pzy_A MOG; ssgcid, seattle st 25.8 88 0.003 28.8 5.4 63 165-230 8-75 (164)
387 3mwb_A Prephenate dehydratase; 25.5 95 0.0032 32.0 6.1 85 694-783 6-101 (313)
388 3lft_A Uncharacterized protein 25.5 3.8E+02 0.013 26.7 11.1 111 32-159 134-247 (295)
389 3hhg_A Transcriptional regulat 25.5 52 0.0018 33.4 4.3 79 468-574 93-171 (306)
390 3bil_A Probable LACI-family tr 25.3 1.1E+02 0.0037 31.9 7.0 78 165-246 67-146 (348)
391 2qip_A Protein of unknown func 24.8 3.9E+02 0.013 24.2 9.8 93 153-246 36-134 (165)
392 3gl9_A Response regulator; bet 24.7 3E+02 0.01 22.8 8.7 57 180-245 14-72 (122)
393 1dbq_A Purine repressor; trans 24.6 2E+02 0.0068 28.6 8.7 64 165-231 8-73 (289)
394 3tsm_A IGPS, indole-3-glycerol 24.5 3.1E+02 0.011 27.5 9.6 87 153-247 82-171 (272)
395 3bbl_A Regulatory protein of L 24.3 1E+02 0.0036 30.9 6.4 78 165-246 5-88 (287)
396 4edp_A ABC transporter, substr 24.3 30 0.001 36.2 2.2 64 1-75 4-69 (351)
397 3miz_A Putative transcriptiona 24.1 1.9E+02 0.0064 29.1 8.4 72 157-231 6-80 (301)
398 3clk_A Transcription regulator 24.1 82 0.0028 31.7 5.5 78 164-245 8-88 (290)
399 3fni_A Putative diflavin flavo 24.0 3.9E+02 0.013 23.9 10.7 77 165-248 5-87 (159)
400 2ef0_A Ornithine carbamoyltran 23.6 4.3E+02 0.015 26.9 10.5 132 32-199 46-185 (301)
401 4exl_A PBP 1, phosphate-bindin 23.3 1.3E+02 0.0045 30.0 6.7 72 495-575 17-91 (265)
402 3grc_A Sensor protein, kinase; 23.1 2.7E+02 0.0092 23.7 8.2 56 179-243 17-74 (140)
403 3umf_A Adenylate kinase; rossm 23.0 29 0.001 33.8 1.6 31 96-126 30-60 (217)
404 3lte_A Response regulator; str 23.0 3.3E+02 0.011 22.7 9.3 57 180-245 18-76 (132)
405 3l4e_A Uncharacterized peptida 23.0 2.1E+02 0.007 27.4 7.7 94 155-257 18-120 (206)
406 2nr1_A NR1 M2, M2; receptor, s 22.6 12 0.00042 22.4 -0.7 17 624-640 8-24 (27)
407 3p9x_A Phosphoribosylglycinami 22.4 3.6E+02 0.012 25.8 9.2 88 152-245 16-105 (211)
408 3spc_A Inward-rectifier K+ cha 22.4 52 0.0018 34.5 3.4 59 622-680 92-154 (343)
409 1xrs_B D-lysine 5,6-aminomutas 22.2 5.8E+02 0.02 25.3 11.0 87 165-257 121-223 (262)
410 1dxh_A Ornithine carbamoyltran 22.2 6.6E+02 0.023 25.9 13.4 133 32-199 46-187 (335)
411 3sr0_A Adenylate kinase; phosp 21.8 39 0.0013 32.6 2.2 30 97-126 2-31 (206)
412 3o1i_D Periplasmic protein TOR 21.7 99 0.0034 31.2 5.6 80 165-246 6-88 (304)
413 2qu7_A Putative transcriptiona 21.7 1.6E+02 0.0056 29.3 7.2 65 164-231 8-73 (288)
414 3ukm_A Potassium channel subfa 21.6 24 0.00083 35.8 0.7 53 624-676 93-147 (280)
415 3out_A Glutamate racemase; str 21.3 1.6E+02 0.0053 29.6 6.7 58 67-125 31-99 (268)
416 1uuy_A CNX1, molybdopterin bio 20.5 2.3E+02 0.008 25.8 7.3 76 164-241 5-96 (167)
417 2csu_A 457AA long hypothetical 20.3 1.9E+02 0.0064 31.7 7.7 145 80-245 72-227 (457)
418 2qmx_A Prephenate dehydratase; 20.3 1.7E+02 0.0058 29.6 6.7 78 695-783 7-95 (283)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-99 Score=939.55 Aligned_cols=765 Identities=19% Similarity=0.347 Sum_probs=637.7
Q ss_pred ceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-CHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
++|+||+++|+++. ..+.|+++|+|+||+++ ++|+++++|++| ++..+..+++++++++|.|||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 37999999999864 78899999999999986 799999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTL 188 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (940)
+.+++++++.++||+|++ +.+.. ..+||+||+.|+ |+.++++++++|||++|++|| |++||....+.+.+++
T Consensus 73 ~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 999999999999999986 33333 367999999999 889999999999999999999 8889999999999999
Q ss_pred hcCceeEEEeecCCCC--CChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCC
Q 002301 189 AAKRCRISFKAPLSVE--ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTN 266 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~--~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 266 (940)
++.|+||++.+.++.. .++.|+..++++|+++++|+||+++....+..++++|+++||++++|+||.+++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999999887743 2378899999999999999999999999999999999999999999999999854333222
Q ss_pred CCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccCC-CCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCccc
Q 002301 267 SPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAK-TPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345 (940)
Q Consensus 267 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 345 (940)
.+..+...|++++.++.++.+.+++|.++|++.++.. ++.....++.+++++||||+++|+|++++..++..+..
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 2334556679999999999999999999999887642 23333456788999999999999999999766544321
Q ss_pred ccCCCcccccCCccCCcc--cccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEEEEecCCCCc
Q 002301 346 SKDSRLSDIQGHLRLDSL--RIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGL 423 (940)
Q Consensus 346 ~~~~~~~~~~g~~~~~~~--~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~~gl 423 (940)
... +..|... ..|.+|.+|.++|++++|+|++|+++||++|++..+.|+|++++++++++||+|++..|+
T Consensus 300 ~~~--------~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~ 371 (823)
T 3kg2_A 300 RGN--------AGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (823)
T ss_dssp SSC--------CCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEE
T ss_pred CCC--------CCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCc
Confidence 111 2234332 467789999999999999999999999999999889999999999999999999998876
Q ss_pred ceecCccccCCCCCCCCCccccceeecCCCcccCCCceeccCCCceEEEEecCcccccceEEe-------CCCcceeeee
Q 002301 424 SVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRGWVFPNNGRHLRIGVPNRVSFREFVSV-------KGSEMTSGFC 496 (940)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~~~~~g~~l~v~v~~~~~~~~~~~~-------~~~~~~~G~~ 496 (940)
....+ . ....+|++|+|++... +||++. ++++++.|||
T Consensus 372 ~~~~~------------------------------~--~~~~~~~~l~v~~~~~---~P~~~~~~~~~~~~~~~~~~G~~ 416 (823)
T 3kg2_A 372 VLTED------------------------------D--TSGLEQKTVVVTTILE---SPYVMMKANHAALAGNERYEGYC 416 (823)
T ss_dssp EECCC------------------------------C--CSSCCCCCEEEEECCC---TTTSEECTTGGGCCGGGGEESHH
T ss_pred eeccC------------------------------c--ccccCCCEEEEEEecC---CCcEEEecCccccCCCCceEEEH
Confidence 53210 0 0123588999999754 455552 4678999999
Q ss_pred HHHHHHHHHhCCCccCeEEee---CCCC-CCCCCHhHHHHHHHcCcccEEeeceeeecCcceeeeeccccccccEEEEEe
Q 002301 497 IDVFTAAINLLPYAVPYKLIP---FGDG-HNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (940)
Q Consensus 497 idll~~l~~~l~~~~~~~~~~---~~~~-~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~ 572 (940)
+||++++++++||+++++.++ ||.. ..||+|++++++|.+|++|++++++++|++|.+.+|||.||+.+++++++|
T Consensus 417 ~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~ 496 (823)
T 3kg2_A 417 VDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIK 496 (823)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEE
T ss_pred HHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEE
Confidence 999999999999997777766 3332 357899999999999999999999999999999999999999999999999
Q ss_pred ccC-CCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCC--------------cCCceeehhhhhhHhh
Q 002301 573 VRK-LDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPP--------------KRQVVTIFWFSFSTMF 637 (940)
Q Consensus 573 ~~~-~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~ 637 (940)
++. ..++++.|++||++.+|++++++++++++++|+++|..+.+|+.+. ..++.+++|+++++++
T Consensus 497 ~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 576 (823)
T 3kg2_A 497 KPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFM 576 (823)
T ss_dssp CCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSC
T ss_pred CCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHH
Confidence 987 4578999999999999999999999999999999997655443221 1236789999999999
Q ss_pred ccccc-cccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCC-CeEEEeCchHHHHHHhhhCC
Q 002301 638 FAHKE-KTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNY-PIGYQVNSFARNYLVDELNI 715 (940)
Q Consensus 638 ~~~~~-~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~-~i~~~~gs~~~~~l~~~~~~ 715 (940)
+++.+ .|++.++|+++++|||++||++++|||+|+|+||++++.++|++++||.+++. ++++..++....++.+. ..
T Consensus 577 ~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~-~~ 655 (823)
T 3kg2_A 577 QQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRS-KI 655 (823)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHC-CC
T ss_pred hcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhc-cc
Confidence 88865 78999999999999999999999999999999999999999999999998653 46767777777777542 11
Q ss_pred Cc-c----------CcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC-CcEEEeCCccccCcceeecCCCCc
Q 002301 716 DE-S----------RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSIVGQVFTKNGWGFAFPRDSP 783 (940)
Q Consensus 716 ~~-~----------~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~sp 783 (940)
.. . ..+.+.+.+|+++.+.+. ++.+|++.+.+.++|+.+++ |+++.+++.+...++++++|||||
T Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~sp 732 (823)
T 3kg2_A 656 AVFDKMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSS 732 (823)
T ss_dssp HHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCS
T ss_pred hHHHHHHHHHHhcCCccccCCHHHHHHHHhcc---CCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCCh
Confidence 11 0 112245889999999731 67799999999999988876 999999999999999999999999
Q ss_pred chHHHHHHHHhcccccchHHHHHhhcc-cCCCCCCCCC--ccccceecccchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002301 784 LAVDISTAILKLSENGDLQRIHDKWLL-RSACSSQGAK--LDVDRLQLKSFSGLYLLCGLACLLALFIYLMQIVHQFSRH 860 (940)
Q Consensus 784 l~~~~~~~il~l~e~G~~~~i~~kw~~-~~~c~~~~~~--~~~~~l~l~~~~g~f~il~~g~~la~~vf~~e~~~~~~~~ 860 (940)
|++.||++|++++|+|++++|.+||+. .+.|...... ....+|+++++.|+|+++++|+++|+++|++|++|++++.
T Consensus 733 l~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~ 812 (823)
T 3kg2_A 733 LGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAE 812 (823)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 999999999999999999999999997 7889876432 4567999999999999999999999999999999887766
Q ss_pred CC
Q 002301 861 YP 862 (940)
Q Consensus 861 ~~ 862 (940)
++
T Consensus 813 ~~ 814 (823)
T 3kg2_A 813 AK 814 (823)
T ss_dssp --
T ss_pred hh
Confidence 54
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=1.6e-51 Score=463.18 Aligned_cols=372 Identities=16% Similarity=0.281 Sum_probs=318.1
Q ss_pred CceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCC-CCCCEEEEEEecCCC-CHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTT-LGGTKLKLQMQDCNH-SGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 29 ~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~i-L~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
+++|+||+++|++.. ..+.|+++|+|+||+++++ |+|++|+++++|++| ++..|+.++++|++++|.|||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 679999999999864 7899999999999999999 799999999999998 99999999999999999999999999
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGD 186 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 186 (940)
..+.+++++++.++||+|+++. |.++ ..+|.||+.|+ |+.++++++++|||++|++|| |++||...++.|.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998743 4443 33556677676 899999999999999999999 88999999999999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCC
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTN 266 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 266 (940)
++++.|+||++.+.++. .+..|+..+|++|+++++|+||+++....+..++++|+++||+.++|+||+++.+....+.
T Consensus 152 ~~~~~g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 229 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILL- 229 (389)
T ss_dssp HHHHTTCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC-
T ss_pred HhhcCCCeEEEEEecCC-CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccccH-
Confidence 99999999999887753 2456899999999999999999999999999999999999999999999998854433332
Q ss_pred CCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccCC-CCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCccc
Q 002301 267 SPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAK-TPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345 (940)
Q Consensus 267 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 345 (940)
.+......|++++.++.++.+.+++|+++|+++++.+ ++.....++.+++++||||+++|+|++++..++..+..
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~ 305 (389)
T 3o21_A 230 ----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSR 305 (389)
T ss_dssp ----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred ----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence 2333456789999989999999999999999987642 22222345788999999999999999998765443321
Q ss_pred ccCCCcccccCCccC--CcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEEEEecCCCCc
Q 002301 346 SKDSRLSDIQGHLRL--DSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGL 423 (940)
Q Consensus 346 ~~~~~~~~~~g~~~~--~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~~gl 423 (940)
... +..| +...+|.+|.+|+++|++++|+|++|+++||++|++..+.|+|+++.++++++||+|++.+||
T Consensus 306 ~~~--------~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~ 377 (389)
T 3o21_A 306 RGS--------AGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERF 377 (389)
T ss_dssp ------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEE
T ss_pred CCC--------CCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCCc
Confidence 110 1233 344678899999999999999999999999999999889999999999999999999999998
Q ss_pred ce
Q 002301 424 SV 425 (940)
Q Consensus 424 ~~ 425 (940)
++
T Consensus 378 ~~ 379 (389)
T 3o21_A 378 VP 379 (389)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.8e-49 Score=448.32 Aligned_cols=379 Identities=18% Similarity=0.277 Sum_probs=322.2
Q ss_pred CCceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCC-CCCEEEEEEecCC-CCHHHHHHHHHHHHhcCcEEEEcCCC
Q 002301 28 RPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTL-GGTKLKLQMQDCN-HSGFLALAEALHLMEGQTVAIIGPQD 105 (940)
Q Consensus 28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL-~g~~l~~~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~ 105 (940)
-|++|+||++||.+. .....|+++|||+||+++++| ++++|.+...|++ +++..+.+.++++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 477999999999874 567899999999999999998 5667777666654 58889999999999999999999999
Q ss_pred chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHH
Q 002301 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALG 185 (940)
Q Consensus 106 s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (940)
|..+.+++++++.++||+++++++.+.. .+||+++|+.+ .+++++++++|||++|++||++++++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~~-----~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPSL-----RGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCCC-----HHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCCH-----HHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999986655432 45676666543 46899999999999999999777665 5677888
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCC
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (940)
+.+.+.|++|+....++ ....++..++++++..++++||+.+....+..++++|+++||++++|+|+.++++....+.
T Consensus 151 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 228 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL 228 (389)
T ss_dssp HHHHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC
T ss_pred HHHHhcCceEEEEeecC--CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchhh
Confidence 99999999999888776 6788999999999999999999999999999999999999999999999999877655433
Q ss_pred CCCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCccc
Q 002301 266 NSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345 (940)
Q Consensus 266 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 345 (940)
.+......|+.++....++.+.+++|.++|++.+..........++.+++++||||+++|+|++++.++......
T Consensus 229 -----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~ 303 (389)
T 4gpa_A 229 -----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISR 303 (389)
T ss_dssp -----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred -----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 345566788999999999999999999999988765444445567889999999999999999999877654321
Q ss_pred ccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEEEEecCCCCcce
Q 002301 346 SKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLSV 425 (940)
Q Consensus 346 ~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~~gl~~ 425 (940)
.. ..+.+.|....+|.+|..|+++|++++|+|++|+|+||++|+|.++.|+|+|++++++++||+|++.+||++
T Consensus 304 ~~------~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~~ 377 (389)
T 4gpa_A 304 RG------NAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVL 377 (389)
T ss_dssp TT------CCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred cC------CccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCeEE
Confidence 11 112456677888999999999999999999999999999999988999999999999999999999999988
Q ss_pred ecCcc
Q 002301 426 VRPET 430 (940)
Q Consensus 426 ~~~~~ 430 (940)
..+++
T Consensus 378 ~~~~t 382 (389)
T 4gpa_A 378 IQDRT 382 (389)
T ss_dssp CCC--
T ss_pred CCCCc
Confidence 76643
No 4
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=7.6e-49 Score=443.27 Aligned_cols=374 Identities=18% Similarity=0.288 Sum_probs=310.9
Q ss_pred ceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCH-HHHHHHHHHHHhcCcEEEEcCCCch-
Q 002301 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSG-FLALAEALHLMEGQTVAIIGPQDAV- 107 (940)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~-~~a~~~a~~li~~~v~aiiGp~~s~- 107 (940)
++|+||+++|+++..|+..+.|+++|+|+||+++++|+|++|+++++|+++++ ..+..+++++++++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 47999999999999999999999999999999999999999999999999976 4566888999888999999999995
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCce--EEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHH
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYF--VRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALG 185 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~--~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (940)
++.+++++++.+++|+|++++++. ....||+| ||+.|++..|+.+++++++++||++|++||+|++||....+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~- 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV- 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-
T ss_pred HHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-
Confidence 457999999999999999987651 12568998 9999999999999999999999999999999999998765555
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCC
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (940)
+.+.+.|++|++.. ++ +..|+..++++|+++++|+||+++...++..++++|+++||+.++|+|+.+++.....+.
T Consensus 160 ~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~l 235 (393)
T 3om0_A 160 RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHL 235 (393)
T ss_dssp HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCCC
T ss_pred HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccch
Confidence 55777899998764 33 456889999999999999999999999999999999999999999999999876544332
Q ss_pred CCCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccCCCCC-CCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCcc
Q 002301 266 NSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPN-GYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (940)
Q Consensus 266 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 344 (940)
. .......|++++..+.++.+.+++|.++|++++++.... ....++.+++++||||+++|+|++++.+.. ...
T Consensus 236 ~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~-~~~ 309 (393)
T 3om0_A 236 D-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQ-EIG 309 (393)
T ss_dssp T-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTS-CCC
T ss_pred h-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhcc-cCc
Confidence 1 223456789999988888999999999998888632111 112467789999999999999999974321 110
Q ss_pred cccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEEEEecCCCCcc
Q 002301 345 FSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLS 424 (940)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~~gl~ 424 (940)
.....|.....|.+|.+|.++|++++|+|++|+++||++|++.+..|+|++++++++++||+|++..||+
T Consensus 310 ----------~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~ 379 (393)
T 3om0_A 310 ----------VKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLA 379 (393)
T ss_dssp ----------CCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC----
T ss_pred ----------CCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCcc
Confidence 0134567777888999999999999999999999999999988899999999999999999999999987
Q ss_pred ee
Q 002301 425 VV 426 (940)
Q Consensus 425 ~~ 426 (940)
+.
T Consensus 380 ~~ 381 (393)
T 3om0_A 380 MN 381 (393)
T ss_dssp --
T ss_pred cc
Confidence 64
No 5
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.4e-48 Score=437.65 Aligned_cols=366 Identities=19% Similarity=0.297 Sum_probs=295.0
Q ss_pred eEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-CHHHHHHHHHHHHhcCcEEEEcCCCchhH
Q 002301 31 VVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (940)
Q Consensus 31 ~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~s~~a 109 (940)
+|+||+++|+++ ...+.|+++|+|+||++ |++|++++.|+++ |+..++.++++|++++|.+||||.+|..+
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~~ 73 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSV 73 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTTH
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhHH
Confidence 699999999985 46789999999999988 6899999999765 99999999999999999999999999999
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHh
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLA 189 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~ 189 (940)
.+++++++.++||+|+++++ . ...++|+||+.|+ |+.++++++++|||++|++|| |++||....+.|.+.++
T Consensus 74 ~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~ 145 (376)
T 3hsy_A 74 NTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAA 145 (376)
T ss_dssp HHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHH
T ss_pred HHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHhh
Confidence 99999999999999998763 2 2356889999887 899999999999999999999 89999999999999999
Q ss_pred cCceeEEEeecCCCC--CChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCCC
Q 002301 190 AKRCRISFKAPLSVE--ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNS 267 (940)
Q Consensus 190 ~~g~~v~~~~~~~~~--~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~ 267 (940)
+.|++|+....++.. .+..|+..++++|+++++|+||+++....+..++++++++||+.++|+||.+++.....+.
T Consensus 146 ~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~-- 223 (376)
T 3hsy_A 146 EKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL-- 223 (376)
T ss_dssp HHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG--
T ss_pred hcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch--
Confidence 999999988766532 2468999999999999999999999999999999999999999999999998753222221
Q ss_pred CCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccC-CCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCcccc
Q 002301 268 PFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA-KTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSFS 346 (940)
Q Consensus 268 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~ 346 (940)
.+......+++++.+..++.+.+++|.++|+++++. +++.+...++.+++++||||+++|+|++++..++..+...
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~ 300 (376)
T 3hsy_A 224 ---LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRR 300 (376)
T ss_dssp ---GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred ---HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 122233345888888888999999999999998763 2222223578899999999999999999987654433211
Q ss_pred cCCCcccccCCccC--CcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEEEEecCCCCcc
Q 002301 347 KDSRLSDIQGHLRL--DSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLS 424 (940)
Q Consensus 347 ~~~~~~~~~g~~~~--~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~~gl~ 424 (940)
..+..| +...+|.+|.+|+++|++++|+|++|+++||++|++....|+|++++++++++||+|++.+||+
T Consensus 301 --------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~ 372 (376)
T 3hsy_A 301 --------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMV 372 (376)
T ss_dssp --------CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEE
T ss_pred --------CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCce
Confidence 002234 4556788899999999999999999999999999998999999999999999999999999876
Q ss_pred e
Q 002301 425 V 425 (940)
Q Consensus 425 ~ 425 (940)
.
T Consensus 373 ~ 373 (376)
T 3hsy_A 373 V 373 (376)
T ss_dssp E
T ss_pred e
Confidence 4
No 6
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=2.1e-48 Score=440.18 Aligned_cols=375 Identities=20% Similarity=0.289 Sum_probs=321.5
Q ss_pred CceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC-CCHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN-HSGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
+++|+||+++|++ +..|...+.|+++|+|+||+++++|+|++|++++.|+. .|+..+...++++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5789999999997 46788999999999999999999999899999998887 588899999999999999999999999
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGD 186 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 186 (940)
..+.+++++++.++||+|+++++++.+++ +.+|+||+.|++..|+.+++++++++||++|++|+ |++||....+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 99999999999999999999999999876 46889999999999999999999999999999998 77899999999999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCC
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTN 266 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 266 (940)
.+++.|++|+... ++ .+..|+..++++|+++++|+|++++...++..++++|+++||+.+.|+|+.+++.....+..
T Consensus 160 ~~~~~g~~v~~~~-~~--~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~~ 236 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LP--ADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVE 236 (395)
T ss_dssp GGGTSSCEEEEEE-CC--SSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCCT
T ss_pred hhhcCCceEEEEE-eC--CCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEechH
Confidence 9999999999876 76 45789999999999999999999999999999999999999999999999986543322221
Q ss_pred CCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccCCCC-----CCCCCCCchhhhhhhHHHHHHHHHHHHhhcCC
Q 002301 267 SPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTP-----NGYIGLNAYGFYAYDTVWLLARAINSFFKQGG 341 (940)
Q Consensus 267 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~-----~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~ 341 (940)
.......++.++.+..++++..++|.++|++++....+ .....++.+++++|||++++++|++++.....
T Consensus 237 -----~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~~ 311 (395)
T 3h6g_A 237 -----PYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV 311 (395)
T ss_dssp -----TTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCC
T ss_pred -----HhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcCCC
Confidence 11111223677788888899999999999986532111 01112567999999999999999998622110
Q ss_pred CcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEcc-CCCCCCCceEEEEeeccceEEEEEecCC
Q 002301 342 NLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNS-HGDLINPAYEIINVIGTGYRRIGYWSNY 420 (940)
Q Consensus 342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~-~G~~~~~~~~I~~~~~~~~~~VG~w~~~ 420 (940)
..+.|.....|.++..|.++|++++|+|++|+++||+ +|++....|+|+++++++++.||+|++.
T Consensus 312 --------------~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~ 377 (395)
T 3h6g_A 312 --------------SSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPA 377 (395)
T ss_dssp --------------CCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETT
T ss_pred --------------cCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCC
Confidence 1346777778989999999999999999999999999 9999888999999999999999999999
Q ss_pred CCcceec
Q 002301 421 SGLSVVR 427 (940)
Q Consensus 421 ~gl~~~~ 427 (940)
.|+++..
T Consensus 378 ~g~~~~~ 384 (395)
T 3h6g_A 378 SGLNMTE 384 (395)
T ss_dssp TEECCCC
T ss_pred CCccccC
Confidence 9987643
No 7
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=9.2e-49 Score=448.81 Aligned_cols=389 Identities=19% Similarity=0.323 Sum_probs=325.1
Q ss_pred CCCceEEEEEEeecCC-----cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEE
Q 002301 27 GRPSVVNIGALLSFST-----NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVA 99 (940)
Q Consensus 27 ~~~~~i~IG~l~~~~~-----~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~a 99 (940)
...++|+||+++|++. ..|+....|+++|+|+||++ |+++|++|+++++|++|++..|+..+++|+.+ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 3457999999999984 56888999999999999999 88899999999999999999999999999985 8999
Q ss_pred EEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcch
Q 002301 100 IIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGR 178 (940)
Q Consensus 100 iiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~ 178 (940)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.+++++++++||++|++|++|++||.
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999998 5799999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCc
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSW 258 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~ 258 (940)
...+.|++.+++.|++|+....++ .|+..++++|+++++|+|++++...++..++++|+++||+.++|+||++++
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 243 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGW 243 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESC
T ss_pred HHHHHHHHHHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCc
Confidence 999999999999999999988887 257789999999999999999999999999999999999988899999998
Q ss_pred cccccCC--------CCCCCCccccccceeEEEEEecCCC--------hhHHHHHHHHHhh-ccCCCCCCCCCCCchhhh
Q 002301 259 LSTALDT--------NSPFPSDVMDDIQGVLTLRTYTPDS--------VLKRKFISRWRNL-TDAKTPNGYIGLNAYGFY 321 (940)
Q Consensus 259 ~~~~~~~--------~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~ 321 (940)
....+.. .........++++|++++.++.+.. +..++|.++|+++ ++ ..++.++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~-------~~~~~~a~~ 316 (433)
T 4f11_A 244 YEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG-------VGPSKFHGY 316 (433)
T ss_dssp SCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT-------SCCCTTHHH
T ss_pred chHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC-------CCcccchhh
Confidence 4433221 0111133457789999999876532 3378899999887 43 456888999
Q ss_pred hhhHHHHHHHHHHHHhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCce
Q 002301 322 AYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAY 401 (940)
Q Consensus 322 ~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~ 401 (940)
+||||+++|+|++++..+..... . +..+..-....|.++++|.++|++++|+|++|+++| ++|++. ..|
T Consensus 317 ~YDAv~~la~Al~~a~~~~~~~~-----~----~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~ 385 (433)
T 4f11_A 317 AYDGIWVIAKTLQRAMETLHASS-----R----HQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTI 385 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS-----S----CCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-----C----CCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeE
Confidence 99999999999999865311000 0 000000011234468999999999999999999999 899975 899
Q ss_pred EEEEeeccceEEEEEecCCCC-cceecCccccCCCCCCCCCccccceeecCCCcccC
Q 002301 402 EIINVIGTGYRRIGYWSNYSG-LSVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQK 457 (940)
Q Consensus 402 ~I~~~~~~~~~~VG~w~~~~g-l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~ 457 (940)
+|++++++++++||.|++..+ |.+ ....|.|||+..++
T Consensus 386 ~I~~~~~g~~~~VG~~~~~~~~l~~------------------~~~~i~W~~~~~P~ 424 (433)
T 4f11_A 386 KFTQFQDSREVKVGEYNAVADTLEI------------------INDTIRFQGSEPPK 424 (433)
T ss_dssp EEEEEETTEEEEEEEEETTTTEEEE------------------CTTTCCCSSSSCCC
T ss_pred EEEEEECCceEEEEEEECCCCeEEE------------------eCCceECCCCCCCC
Confidence 999999999999999986532 221 11368999988433
No 8
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=9.5e-48 Score=442.76 Aligned_cols=371 Identities=20% Similarity=0.336 Sum_probs=308.5
Q ss_pred CCCceEEEEEEeecC------------C-cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHH
Q 002301 27 GRPSVVNIGALLSFS------------T-NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLM 93 (940)
Q Consensus 27 ~~~~~i~IG~l~~~~------------~-~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li 93 (940)
..+++|.||++||++ . ..|.....|+++|+||||+++++|||++|+++++|+|+++..|++++.+|+
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 457899999999996 1 156788999999999999999999999999999999999999999999999
Q ss_pred hc-------------------------CcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCC
Q 002301 94 EG-------------------------QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQS 147 (940)
Q Consensus 94 ~~-------------------------~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps 147 (940)
++ +|+|||||.+|..+.+++++++.+++|+|++++++|.|++ .+||||||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 5999999999999999999999999999999999999998 579999999999
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHH-HHHhcCCCeEEE
Q 002301 148 DQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLL-VKVALTESRIIV 226 (940)
Q Consensus 148 d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l-~~l~~~~~~viv 226 (940)
|..|+.++++++++|||+||++|++|++||+...+.|++++++.|+||++.+.++...+..++..++ +.+++++++|||
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi 248 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVV 248 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999998655678999999 678889999999
Q ss_pred EEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCCCCCCCccccccceeEEEEEecCCChhHHHHHHH-------
Q 002301 227 VHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISR------- 299 (940)
Q Consensus 227 ~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~------- 299 (940)
+++...++..+++++.++|+. ++||+++.|........ .....++|++++.++..+.+++++|++.
T Consensus 249 ~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p 321 (479)
T 3sm9_A 249 LFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNH 321 (479)
T ss_dssp EECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc----cccccCceEEEEEeccCCCcchhhHhhccCcCcCC
Confidence 999999999999999999985 89999998765321111 1125678999999999999998888754
Q ss_pred --------HHhhcc-----------CCCCCCCC-----CCCchhhhhhhHHHHHHHHHHHHhhcCCCcccccCCCccccc
Q 002301 300 --------WRNLTD-----------AKTPNGYI-----GLNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQ 355 (940)
Q Consensus 300 --------~~~~~~-----------~~~~~~~~-----~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~ 355 (940)
|+..|+ .|++.+.. ........+||||+++|+|||+++.+.....
T Consensus 322 ~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~----------- 390 (479)
T 3sm9_A 322 RNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNT----------- 390 (479)
T ss_dssp TCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC-----------
T ss_pred CCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCC-----------
Confidence 444443 13332221 1123346899999999999999976311100
Q ss_pred CCccCCcccccCChHHHH-HHHHhcccccc------ce-eEEEccCCCCCCCceEEEEeec----cceEEEEEec
Q 002301 356 GHLRLDSLRIFNGGNLLR-DSILQANMTGT------AG-PARFNSHGDLINPAYEIINVIG----TGYRRIGYWS 418 (940)
Q Consensus 356 g~~~~~~~~~~~~g~~l~-~~l~~~~f~g~------tG-~v~Fd~~G~~~~~~~~I~~~~~----~~~~~VG~w~ 418 (940)
...|.....+ ++++|. ++|++++|.+. +| ++.||++|++ ...|+|+|++. ..+++||.|+
T Consensus 391 -~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 391 -TKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp -SSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred -CcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 1122222233 488999 99999999998 55 5999999996 68999999973 2368999997
No 9
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=2.6e-47 Score=448.97 Aligned_cols=393 Identities=20% Similarity=0.338 Sum_probs=322.7
Q ss_pred CCCceEEEEEEeecCC-------------cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHH
Q 002301 27 GRPSVVNIGALLSFST-------------NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLM 93 (940)
Q Consensus 27 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li 93 (940)
..+++|+||+++|++. ..|.....|+++|+|+||+++++|||++|+++++|+++++..|++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 3567999999999973 357788899999999999999999999999999999999999999999888
Q ss_pred h-------------------------cCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCC
Q 002301 94 E-------------------------GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQS 147 (940)
Q Consensus 94 ~-------------------------~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~ps 147 (940)
+ ++|+|||||.+|..+.+++++++.+++|+|+++++++.|++ .+||||||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3 48999999999999999999999999999999999999998 579999999999
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc-CCCeEEE
Q 002301 148 DQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIV 226 (940)
Q Consensus 148 d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viv 226 (940)
|..|+.++++++++|||+||++|++|++||....+.|++++++.|+||++.+.++...+..++..++.+|+. +++||||
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi 249 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVV 249 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEE
Confidence 999999999999999999999999999999999999999999999999999888854467889999999964 7999999
Q ss_pred EEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCCCCCCCccccccceeEEEEEecCCChhHHHHH---------
Q 002301 227 VHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFI--------- 297 (940)
Q Consensus 227 ~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~--------- 297 (940)
+++...++..+++++.++|+ +++||+++.|....... ....+.++|++++.++..+.+++++|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p 322 (555)
T 2e4u_A 250 LFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNH 322 (555)
T ss_dssp EECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCC
Confidence 99999999999999999987 78999998776532221 112356789999998876666665544
Q ss_pred ------HHHHhhccC-----------CCCCCCC-----CCCchhhhhhhHHHHHHHHHHHHhhcCCCcccccCCCccccc
Q 002301 298 ------SRWRNLTDA-----------KTPNGYI-----GLNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQ 355 (940)
Q Consensus 298 ------~~~~~~~~~-----------~~~~~~~-----~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~ 355 (940)
+.|+..|+. |++.+.. .+..+++.+||||+++|+||+++..+.....
T Consensus 323 ~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~----------- 391 (555)
T 2e4u_A 323 RNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQT----------- 391 (555)
T ss_dssp TCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTC-----------
T ss_pred CCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCC-----------
Confidence 456665542 3322211 1456788999999999999999864211000
Q ss_pred CCccCCcccccCChHHHHH-HHHhcccc------cccee-EEEccCCCCCCCceEEEEee--cc--ceEEEEEecCCCCc
Q 002301 356 GHLRLDSLRIFNGGNLLRD-SILQANMT------GTAGP-ARFNSHGDLINPAYEIINVI--GT--GYRRIGYWSNYSGL 423 (940)
Q Consensus 356 g~~~~~~~~~~~~g~~l~~-~l~~~~f~------g~tG~-v~Fd~~G~~~~~~~~I~~~~--~~--~~~~VG~w~~~~gl 423 (940)
...|..... .++++|.+ +|++++|+ |++|+ +.||++|++ ...|+|+|++ ++ .+++||.|++ +|
T Consensus 392 -~~~~~~~~~-~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~--~l 466 (555)
T 2e4u_A 392 -TKLCDAMKI-LDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE--TL 466 (555)
T ss_dssp -SSCCGGGTS-CCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--SE
T ss_pred -CccccccCC-CCcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc--eE
Confidence 011222222 25889999 99999999 99998 999999996 4889999996 23 4799999984 33
Q ss_pred ceecCccccCCCCCCCCCccccceeecCCCcccCCCcee
Q 002301 424 SVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRGWV 462 (940)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~ 462 (940)
.+ +...|.|++ .++|+++|
T Consensus 467 ~i------------------~~~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 467 SL------------------DVDSIHWSR--NSVPTSQC 485 (555)
T ss_dssp EC------------------CGGGCCCTT--SSCCCCCS
T ss_pred EE------------------eccccccCC--CCCcceee
Confidence 32 124689987 57899988
No 10
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=8.9e-48 Score=432.73 Aligned_cols=371 Identities=21% Similarity=0.295 Sum_probs=314.4
Q ss_pred CCCceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-CHHHHHHHHHHHHhcCcEEEEcCCC
Q 002301 27 GRPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAEALHLMEGQTVAIIGPQD 105 (940)
Q Consensus 27 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~ 105 (940)
..+++|+||+++|++.. ..+.|+++|+|+||+++ +|++++.|+++ ++..++.++++|++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 45679999999999865 78899999999999885 99999999987 9999999999999999999999999
Q ss_pred chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHH
Q 002301 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALG 185 (940)
Q Consensus 106 s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (940)
|..+.+++++++.++||+|+++ +|.++ ..+|+||+.|+ |+.+++++++++||++|++|| |++||....+.+.
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999973 45553 45677888887 899999999999999999999 7799999999999
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCC
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (940)
+.+++.|+||+....++ .+..|+..++++|+++++|+||+++...++..++++|+++||+.++|+||+++......+.
T Consensus 149 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~ 226 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILT--TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL 226 (384)
T ss_dssp HHHHHHTCEEEEEEGGG--CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH
T ss_pred HHhhhcCceEEEEEecc--CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH
Confidence 99999999999988655 5678999999999999999999999999999999999999999999999999854322221
Q ss_pred CCCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccCC-CCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCcc
Q 002301 266 NSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAK-TPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (940)
Q Consensus 266 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 344 (940)
.+..+...|++++.++.++.+..++|.++|+++++.. ++.....++.+++++||||+++++|++++...+..+.
T Consensus 227 -----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~ 301 (384)
T 3saj_A 227 -----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDIS 301 (384)
T ss_dssp -----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcccee
Confidence 2233455679999999999999999999999987532 2112224577899999999999999999876544432
Q ss_pred cccCCCcccccCCccCCcc--cccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEEEEecCCCC
Q 002301 345 FSKDSRLSDIQGHLRLDSL--RIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSG 422 (940)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~--~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~~g 422 (940)
.+. .+..|... ..|.+|..|+++|++++|+|++|+++||++|++.+..|+|++++++++++||+|++..|
T Consensus 302 ~~~--------~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~g 373 (384)
T 3saj_A 302 RRG--------NAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDK 373 (384)
T ss_dssp CCC--------SCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred cCC--------CCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCCC
Confidence 111 02244432 56788999999999999999999999999999989999999999999999999999999
Q ss_pred cceecCc
Q 002301 423 LSVVRPE 429 (940)
Q Consensus 423 l~~~~~~ 429 (940)
+++.+++
T Consensus 374 l~~~~~~ 380 (384)
T 3saj_A 374 FVPAALE 380 (384)
T ss_dssp EEECCC-
T ss_pred ccccCcc
Confidence 8876654
No 11
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=2.3e-47 Score=438.14 Aligned_cols=367 Identities=16% Similarity=0.225 Sum_probs=301.8
Q ss_pred CCceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCC----CCCCCEEEEEEecCCCCHHHHHHHHHHHH----hcC
Q 002301 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPT----TLGGTKLKLQMQDCNHSGFLALAEALHLM----EGQ 96 (940)
Q Consensus 28 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~----iL~g~~l~~~~~D~~~~~~~a~~~a~~li----~~~ 96 (940)
.+++|+||+++|++. ..|.....|+++|+|+||++++ +|+|++|+++++|++|++. |+..+.+++ +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 346899999999983 4466788999999999999998 8999999999999999998 776666554 238
Q ss_pred cEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCC--CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 002301 97 TVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSL--QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 174 (940)
Q Consensus 97 v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~--~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~ 174 (940)
|.+||||.+|..+.+++++++.+++|+|+++++++.++++ +||||||+.|++..|+.++++++++|||++|++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999984 79999999999999999999999999999999999999
Q ss_pred Ccchh---hHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCe
Q 002301 175 DHGRN---GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (940)
Q Consensus 175 ~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~ 251 (940)
+||+. ..+.|++++++.|+||++...++ .+..++..++++|+ +++|+||+++...++..++++++++||..+.|
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~ 241 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDE--TKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDY 241 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECT--TSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTC
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecC--CcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCE
Confidence 99999 99999999999999999887776 34456899999999 89999999999999999999999999988889
Q ss_pred EEEecCcccc------ccCCCCCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhH
Q 002301 252 VWIATSWLST------ALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDT 325 (940)
Q Consensus 252 ~wi~~~~~~~------~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDA 325 (940)
+||++++... .++..............++.++.++.++.|.+++|.++|++++++..-..+..++.++.++|||
T Consensus 242 v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~YdA 321 (441)
T 1jdp_A 242 AFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDA 321 (441)
T ss_dssp EEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHH
T ss_pred EEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHHHH
Confidence 9999884322 1111110000011335566677777888999999999998773321000111346688999999
Q ss_pred HHHHHHHHHHHhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEE
Q 002301 326 VWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIIN 405 (940)
Q Consensus 326 v~~la~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~ 405 (940)
|+++|+|++++..++.. +.++++|.++|++++|+|++|++.||++|++. ..|+|++
T Consensus 322 v~~~A~Al~~~~~~~~~-----------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~ 377 (441)
T 1jdp_A 322 ILLYVLALHEVLRAGYS-----------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIA 377 (441)
T ss_dssp HHHHHHHHHHHHHTTCC-----------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEE
T ss_pred HHHHHHHHHHHHHhCCC-----------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEEe
Confidence 99999999998654211 22589999999999999999999999999975 8899999
Q ss_pred eec---cceEEEEEecCCCC
Q 002301 406 VIG---TGYRRIGYWSNYSG 422 (940)
Q Consensus 406 ~~~---~~~~~VG~w~~~~g 422 (940)
++. +.+++||.|++..+
T Consensus 378 ~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 378 MTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEETTTTEEEEEEEEETTTT
T ss_pred cccCCCCceEEEEEEcCCCC
Confidence 963 56899999998765
No 12
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=3.3e-47 Score=440.22 Aligned_cols=395 Identities=21% Similarity=0.347 Sum_probs=313.5
Q ss_pred CCCceEEEEEEeecCCc-----------------chhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHH
Q 002301 27 GRPSVVNIGALLSFSTN-----------------VGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEA 89 (940)
Q Consensus 27 ~~~~~i~IG~l~~~~~~-----------------~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a 89 (940)
..+++|.||++||.+.. .|.+...|+.+||||||+++++|||++|+++++|+|+++..|++++
T Consensus 13 ~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a 92 (496)
T 3ks9_A 13 RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQS 92 (496)
T ss_dssp EECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred ecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHH
Confidence 56889999999998631 2456789999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------------hcCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCC
Q 002301 90 LHLM-----------------------------EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFP 139 (940)
Q Consensus 90 ~~li-----------------------------~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p 139 (940)
.+++ +++|+|||||.+|..+.+++++++.+++|+|++++++|.|++ .+||
T Consensus 93 ~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p 172 (496)
T 3ks9_A 93 IEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 172 (496)
T ss_dssp HHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCT
T ss_pred HHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCC
Confidence 9998 348999999999999999999999999999999999999999 5799
Q ss_pred ceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc
Q 002301 140 YFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL 219 (940)
Q Consensus 140 ~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~ 219 (940)
||||+.|+|..|+.++++++++|||+||++|++|++||+...+.+++++++.|+||++.+.++...+..++..++++|++
T Consensus 173 ~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~ 252 (496)
T 3ks9_A 173 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRE 252 (496)
T ss_dssp TEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred ceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999888765678899999999998
Q ss_pred C--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCCCCCCCccccccceeEEEEEecCCChhHHHHH
Q 002301 220 T--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFI 297 (940)
Q Consensus 220 ~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~ 297 (940)
+ +++||++++....+..+++++.++|+.+ .+.||+++.|....... ......+.|++++.++.++.+++++|+
T Consensus 253 ~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl 327 (496)
T 3ks9_A 253 RLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDDYF 327 (496)
T ss_dssp TTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHHHH
T ss_pred ccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHhHh
Confidence 4 8899999998888999999999999864 36899998775432111 112356889999999999999999887
Q ss_pred HH---------------HHhhccC---------------CCCCCCCC----CCchhhhhhhHHHHHHHHHHHHhhcCCCc
Q 002301 298 SR---------------WRNLTDA---------------KTPNGYIG----LNAYGFYAYDTVWLLARAINSFFKQGGNL 343 (940)
Q Consensus 298 ~~---------------~~~~~~~---------------~~~~~~~~----~~~~~~~~YDAv~~la~Al~~~~~~~~~~ 343 (940)
++ |...|+. |++++... .......+|+||+++|+|||+++.+....
T Consensus 328 ~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~ 407 (496)
T 3ks9_A 328 LKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPG 407 (496)
T ss_dssp TTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 54 4444421 33222211 01112469999999999999997542211
Q ss_pred ccccCCCcccccCCccCCcccccCChHHHHHHHHhcccccccee-EEEccCCCCCCCceEEEEeec-----cceEEEEEe
Q 002301 344 SFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGP-ARFNSHGDLINPAYEIINVIG-----TGYRRIGYW 417 (940)
Q Consensus 344 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~-v~Fd~~G~~~~~~~~I~~~~~-----~~~~~VG~w 417 (940)
. ...|.....+ ++++|.++|++++|.+.+|+ +.||++|+. ...|+|+|++. ..+++||.|
T Consensus 408 ~------------~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~VG~~ 473 (496)
T 3ks9_A 408 H------------VGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHVGTW 473 (496)
T ss_dssp C------------SSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEEEEE
T ss_pred C------------CCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEEEEE
Confidence 0 1123334445 48999999999999999996 999999995 58999999973 236899999
Q ss_pred cCCCCcceecCccccCCCCCCCCCccccceeecCCCcccCCCc
Q 002301 418 SNYSGLSVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRG 460 (940)
Q Consensus 418 ~~~~gl~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~ 460 (940)
++. .|.+. ...| |.++..++|+|
T Consensus 474 ~~~-~l~i~------------------~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 474 HEG-VLNID------------------DYKI-QMNKSGLVPRG 496 (496)
T ss_dssp ETT-EEEEC------------------TTTC------------
T ss_pred eCC-eEEEe------------------hhhc-ccCCCCCCCCC
Confidence 732 24321 1235 77777777764
No 13
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=2e-47 Score=438.26 Aligned_cols=387 Identities=16% Similarity=0.182 Sum_probs=318.1
Q ss_pred ceEEEEEEeecC---CcchhHHHH-HHHHHHHHHhcCCCCCCCCEEEEEEecC-----CCCHHHHHHHHHHHHhc-CcEE
Q 002301 30 SVVNIGALLSFS---TNVGKVAKL-AIKAAVDDVNSDPTTLGGTKLKLQMQDC-----NHSGFLALAEALHLMEG-QTVA 99 (940)
Q Consensus 30 ~~i~IG~l~~~~---~~~g~~~~~-a~~~Ave~IN~~~~iL~g~~l~~~~~D~-----~~~~~~a~~~a~~li~~-~v~a 99 (940)
++|+||+++|++ +..|..... |+++|+|+||+++++|||++|+++++|+ +|++..++..+.+++.+ +|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 479999999998 355666666 9999999999999999999999999999 56677888888887754 9999
Q ss_pred EEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEE------EE
Q 002301 100 IIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAI------YV 172 (940)
Q Consensus 100 iiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii------~~ 172 (940)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..||||||+.|++..|+.++++++++|||++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 999999999999999999999999999999999998 46999999999999999999999999999999999 67
Q ss_pred cCCcchhhHHHHHHHHhc-CceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCe
Q 002301 173 DDDHGRNGIAALGDTLAA-KRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (940)
Q Consensus 173 d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~ 251 (940)
|++|| ..++.+.+++.+ .|+||+....++ .+..++..++++|++ ++|+||+++...++..++++|+++||..++|
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDY 236 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTC
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEec--CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCE
Confidence 77788 566788888888 999999887764 467789999999998 9999999999999999999999999988789
Q ss_pred EEEecCccccccC---------CC---CCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccC---CCCCCCCCCC
Q 002301 252 VWIATSWLSTALD---------TN---SPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA---KTPNGYIGLN 316 (940)
Q Consensus 252 ~wi~~~~~~~~~~---------~~---~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~ 316 (940)
+||.++.+..... .. ....+.+.++.+|++++.+..|+.+..++|.++|++.++. |... ...++
T Consensus 237 ~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~ 315 (435)
T 1dp4_A 237 VFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVE-DGLKN 315 (435)
T ss_dssp EEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCC-CSGGG
T ss_pred EEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccc-cchhh
Confidence 9999987654321 00 0000223456789999988888889999999999877542 2211 11356
Q ss_pred chhhhhhhHHHHHHHHHHHHhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCC
Q 002301 317 AYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDL 396 (940)
Q Consensus 317 ~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~ 396 (940)
.++.++||||+++|+|+++++.+++. +.++++|.++|++++|+|++|++.||++|++
T Consensus 316 ~~~~~~ydav~~~a~Al~~~~~~~~~-----------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~ 372 (435)
T 1dp4_A 316 IIPASFHDGLLLYVQAVTETLAQGGT-----------------------VTDGENITQRMWNRSFQGVTGYLKIDRNGDR 372 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-----------------------TTCHHHHHHTTTTEEEEETTEEEEECTTSBB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-----------------------CCCHHHHHHHHhCceeeccceeEEECCCCCc
Confidence 78899999999999999998654321 1258999999999999999999999999997
Q ss_pred CCCceEEEEe--eccceEEEEEecCCCC-cceecCccccCCCCCCCCCccccceeecCCCcccCCCcee
Q 002301 397 INPAYEIINV--IGTGYRRIGYWSNYSG-LSVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRGWV 462 (940)
Q Consensus 397 ~~~~~~I~~~--~~~~~~~VG~w~~~~g-l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~ 462 (940)
. ..|+|+++ .++.++.||.|++..+ +.+ .+...|.||++..+...+.|
T Consensus 373 ~-~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~-----------------~~~~~i~W~~~~~P~~~p~C 423 (435)
T 1dp4_A 373 D-TDFSLWDMDPETGAFRVVLNYNGTSQELMA-----------------VSEHKLYWPLGYPPPDVPKC 423 (435)
T ss_dssp C-CCEEEEEECTTTCCEEEEEEECTTTCCEEE-----------------STTCCCCCTTSSCCCSSCTT
T ss_pred c-ceeEEEEecCCCCcEEEEEEecCCCceEEE-----------------cCCceeeCCCCCCCCCCCCC
Confidence 5 79999999 5567999999987653 111 01246899998443333444
No 14
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=7.7e-47 Score=425.44 Aligned_cols=340 Identities=23% Similarity=0.359 Sum_probs=284.0
Q ss_pred CCceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHH-HHhcCcEEEEc----
Q 002301 28 RPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALH-LMEGQTVAIIG---- 102 (940)
Q Consensus 28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~-li~~~v~aiiG---- 102 (940)
.+++|+||+++|++ ..+.|+++|+++||++++. .|++|+++..|+++|+..++..+++ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46799999999998 6789999999999999865 5799999999999999999976555 89889999999
Q ss_pred -CCCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhh
Q 002301 103 -PQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNG 180 (940)
Q Consensus 103 -p~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~ 180 (940)
|.+|..+.+++++++.+++|+|+++++++.+++ ..||||||+.|++..|+.++++++++|||++|++||+|++||+..
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 668888999999999999999999999999998 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceeE-----------EEe-------ecCCC-CCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHH
Q 002301 181 IAALGDTLAAKRCRI-----------SFK-------APLSV-EATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v-----------~~~-------~~~~~-~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a 241 (940)
.+.|++++++.|+++ .+. +.++. ..+..|+..++++|+++++|+||+++...++..++++|
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 235 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 235 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHH
Confidence 999999999999743 322 11110 13567899999999999999999999999999999999
Q ss_pred HHcCCCCCCeEEEecCccccccCCCCCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhh
Q 002301 242 QYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFY 321 (940)
Q Consensus 242 ~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (940)
+++||++++|+||+++.+... ....+.++|+++++++.++. .++.
T Consensus 236 ~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~---------------------------~~~~ 280 (384)
T 3qek_A 236 AMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN---------------------------ESAH 280 (384)
T ss_dssp HHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC---------------------------HHHH
T ss_pred HHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc---------------------------hhHH
Confidence 999999889999999976532 12346789999999876532 2678
Q ss_pred hhhHHHHHHHHHHHHhhcCCCcccccCCCcccccCCccC-CcccccCChHHHHHHHHhccc-cccceeEEEccCCCCCCC
Q 002301 322 AYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRL-DSLRIFNGGNLLRDSILQANM-TGTAGPARFNSHGDLINP 399 (940)
Q Consensus 322 ~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~g~~l~~~l~~~~f-~g~tG~v~Fd~~G~~~~~ 399 (940)
+||||+++|+|+++++.+..... . ...| +...+|..+..|.+.+++++| +|++|+++||++|++.+.
T Consensus 281 ~YdAV~~~a~Al~~~~~~~~~~~-~----------~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~ 349 (384)
T 3qek_A 281 ISDAVAVVAQAIHELFEMENITD-P----------PRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFA 349 (384)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCC-C----------CSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSC
T ss_pred HHHHHHHHHHHHHHHHhccCCCC-C----------CCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcc
Confidence 99999999999999976532110 0 1123 345688889999999999998 999999999999998789
Q ss_pred ceEEEEeeccceEEEEEecC
Q 002301 400 AYEIINVIGTGYRRIGYWSN 419 (940)
Q Consensus 400 ~~~I~~~~~~~~~~VG~w~~ 419 (940)
.|+|+|++++++++||+|+.
T Consensus 350 ~~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 350 QYSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp CEEEEEEETTEEEEEEEECS
T ss_pred cEEEEEEcCCceEEEEEEeC
Confidence 99999999999999999984
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=1.3e-47 Score=442.89 Aligned_cols=373 Identities=22% Similarity=0.382 Sum_probs=283.3
Q ss_pred CCCceEEEEEEeecCC-------------cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHH
Q 002301 27 GRPSVVNIGALLSFST-------------NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLM 93 (940)
Q Consensus 27 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li 93 (940)
..+++|+||++||++. ..|.....|+++|+||||+++++|||++|+++++|+|+++..|++.+.+++
T Consensus 12 ~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll 91 (481)
T 3mq4_A 12 RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFV 91 (481)
T ss_dssp EECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGG
T ss_pred ccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHH
Confidence 4578999999999983 257788999999999999999999999999999999999999999999998
Q ss_pred h-----------------------cCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCChH
Q 002301 94 E-----------------------GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQ 149 (940)
Q Consensus 94 ~-----------------------~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~psd~ 149 (940)
+ ++|+|||||.+|..+.+++++++.+++|+|++++++|.|++ .+||||||+.|+|.
T Consensus 92 ~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 92 QALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTH
T ss_pred hCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchH
Confidence 6 46999999999999999999999999999999999999999 67999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhc-CceeEEEeecCCCCCChh--HHHHHHHHHh-cCCCeEE
Q 002301 150 YQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAA-KRCRISFKAPLSVEATED--EITDLLVKVA-LTESRII 225 (940)
Q Consensus 150 ~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~--~~~~~l~~l~-~~~~~vi 225 (940)
.|+.++++++++|||+||++|++|++||+...+.|++++++ .|+||++.+.++...... ++..++.+++ .+++|||
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vI 251 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAV 251 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CE
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999885 799999988887543334 7888999998 5799999
Q ss_pred EEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCCCCCCCccccccceeEEEEEecCCChhHHHHHHH------
Q 002301 226 VVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISR------ 299 (940)
Q Consensus 226 v~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~------ 299 (940)
|+++...++..+++++.++|+.+ .++||+++.|....... ......++|.+++.++..+.+++++|++.
T Consensus 252 i~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 326 (481)
T 3mq4_A 252 VIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENN 326 (481)
T ss_dssp EECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCcC
Confidence 99999999999999999999864 48999998876533221 12246689999999999999999988654
Q ss_pred ---------HHhhcc---------------CCCCCCCCC------CCchhhhhhhHHHHHHHHHHHHhhcCCCcccccCC
Q 002301 300 ---------WRNLTD---------------AKTPNGYIG------LNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDS 349 (940)
Q Consensus 300 ---------~~~~~~---------------~~~~~~~~~------~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~ 349 (940)
|+..|+ .|++.+... .......+||||+++|+|||+++.+.....
T Consensus 327 p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~----- 401 (481)
T 3mq4_A 327 RRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADY----- 401 (481)
T ss_dssp TTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCC-----
Confidence 443332 133322211 113455799999999999999975322110
Q ss_pred CcccccCCccCCcccccCChHHHHHHHHhccccccce-eEEEccCCCCCCCceEEEEeec-----cceEEEEEec
Q 002301 350 RLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAG-PARFNSHGDLINPAYEIINVIG-----TGYRRIGYWS 418 (940)
Q Consensus 350 ~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG-~v~Fd~~G~~~~~~~~I~~~~~-----~~~~~VG~w~ 418 (940)
...|.....+ ++++|.++|++++|.+.+| ++.||++|++ ...|+|+|++. ..+++||.|+
T Consensus 402 -------~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 402 -------RGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ---------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred -------CCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 1123333344 4899999999999999999 5999999995 58999999972 2568999997
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=2.1e-41 Score=375.45 Aligned_cols=339 Identities=15% Similarity=0.262 Sum_probs=262.8
Q ss_pred CceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEE-ecCCCCHHHHHHHHHHHHhc-CcEEEEc-CCC
Q 002301 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQM-QDCNHSGFLALAEALHLMEG-QTVAIIG-PQD 105 (940)
Q Consensus 29 ~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~-~D~~~~~~~a~~~a~~li~~-~v~aiiG-p~~ 105 (940)
+..+.||++|.-+.. ..++..|++..|.-. +..++..++ ..+.+||+.+...+|+++.. +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 457999999987653 788999999998554 235777654 35678999999999999976 7989885 555
Q ss_pred chhHHH--HHHhhccCCccEEeeecCCC-CCCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhH
Q 002301 106 AVTSHV--VSHVANELQVPLLSFSATDP-TLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGI 181 (940)
Q Consensus 106 s~~a~~--va~~~~~~~vP~Is~~at~~-~ls~-~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 181 (940)
+..+.+ ++.+++.++||+|++++++| .|++ .+||+|||++|+|..|+.++++++++|||++|++||+|+ .+.
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccH
Confidence 444444 99999999999999999998 8998 579999999999999999999999999999999999985 344
Q ss_pred HHHHHHHhcC--c--eeEEEeecCCCCCChhHHHHHH-HHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEec
Q 002301 182 AALGDTLAAK--R--CRISFKAPLSVEATEDEITDLL-VKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIAT 256 (940)
Q Consensus 182 ~~l~~~l~~~--g--~~v~~~~~~~~~~~~~~~~~~l-~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 256 (940)
+.|.+.+++. | +|+.+...++...+..++...+ ++|+++++++||++++.+.+..++++|.++||++++|+||++
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t 229 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVP 229 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEEC
T ss_pred HHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEe
Confidence 5566665554 4 4887776665444455677888 689999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCCccccccceeEEEEEecCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHH
Q 002301 257 SWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSF 336 (940)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~ 336 (940)
+++....+.. + .+..+|+++++++. |+ ..+..++||||+++|+|++++
T Consensus 230 ~~~~~~~~~~----~--~~~~~g~~~~~~~~------------W~--------------~~~~~~~yDaV~~~A~A~~~~ 277 (364)
T 3qel_B 230 SLVAGDTDTV----P--SEFPTGLISVSYDE------------WD--------------YGLPARVRDGIAIITTAASDM 277 (364)
T ss_dssp HHHHCSTTCC----C--TTSCTTCEECCBCT------------TT--------------SCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcccc----c--ccCCCceEEEeecc------------ch--------------hhHHHHHHHHHHHHHHHHHHH
Confidence 8764333321 1 24568888877643 32 124568999999999999998
Q ss_pred hhcCCCcccccCCCcccccCCccCCccc--ccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEee-ccceEE
Q 002301 337 FKQGGNLSFSKDSRLSDIQGHLRLDSLR--IFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI-GTGYRR 413 (940)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~-~~~~~~ 413 (940)
.++.+.++.. +.+|.... .|.+|..|.++|++++|+|+ +++||++|++.++.|+|+|++ ++++++
T Consensus 278 ~~~~~~i~~~----------~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~ 345 (364)
T 3qel_B 278 LSEHSFIPEP----------KSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWER 345 (364)
T ss_dssp HTTTSCCCCC----------CSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEE
T ss_pred HhccCCCCCC----------CCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEE
Confidence 7654333211 23455443 67889999999999999998 899999999999999999998 678999
Q ss_pred EEEecCCCCcc
Q 002301 414 IGYWSNYSGLS 424 (940)
Q Consensus 414 VG~w~~~~gl~ 424 (940)
||+|++ .+|.
T Consensus 346 VG~W~~-~~L~ 355 (364)
T 3qel_B 346 VGKWKD-KSLQ 355 (364)
T ss_dssp EEEECS-SCEE
T ss_pred EEEECC-CeEE
Confidence 999984 3554
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=7.7e-39 Score=360.73 Aligned_cols=359 Identities=16% Similarity=0.129 Sum_probs=302.7
Q ss_pred CceEEEEEEeecCC--cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEcCCC
Q 002301 29 PSVVNIGALLSFST--NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQD 105 (940)
Q Consensus 29 ~~~i~IG~l~~~~~--~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~ 105 (940)
.++|+||+++|++. ..|.....|+++|+++||+++|+++|++++++++|+++++..+.+.+.+|+++ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 46899999999986 35777899999999999999999855999999999999999999999999996 9999999999
Q ss_pred chhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHH
Q 002301 106 AVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAAL 184 (940)
Q Consensus 106 s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 184 (940)
|..+.+++++++..+||+|++.++++.++. ..+||+||+.|++..++.++++++.++||++|++|+.|++||+...+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999988888875 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC--ceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCcc--c
Q 002301 185 GDTLAAK--RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWL--S 260 (940)
Q Consensus 185 ~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~--~ 260 (940)
++.+++. |++++....++ .+..|+...++++++.++++|++++...++..++++++++|+... +|+.+... .
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~~~ 238 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPA--LYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTGEP 238 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCC--TTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEESH
T ss_pred HHHHHHhCCCcEEEeeecCC--CCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCCCh
Confidence 9999998 89999887777 455689999999999999999999999999999999999998543 33333222 1
Q ss_pred cccCCCCCCCCccccccceeEEEEE-ec-CCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhh
Q 002301 261 TALDTNSPFPSDVMDDIQGVLTLRT-YT-PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFK 338 (940)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~l~~~~-~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~ 338 (940)
..+.. -..+..+|++.... +. ++.+..++|.++|+++++ ..++.++..+|||++++++|++++.
T Consensus 239 ~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~Yda~~~~a~Al~~ag- 304 (387)
T 3i45_A 239 EYLNP------LKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK-------EDPFVGSLVGYNTLTAMAVAFEKAG- 304 (387)
T ss_dssp HHHGG------GGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHH------hhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC-------CCCCcHHHHHHHHHHHHHHHHHHhC-
Confidence 11111 11234677766532 32 578899999999999886 3467889999999999999999961
Q ss_pred cCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEee-ccceEEEEEe
Q 002301 339 QGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI-GTGYRRIGYW 417 (940)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~-~~~~~~VG~w 417 (940)
. .++..|.++|++++|+|++|+++|++++++......|.+++ .++...++.|
T Consensus 305 ---~------------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w 357 (387)
T 3i45_A 305 ---G------------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDW 357 (387)
T ss_dssp ---S------------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEE
T ss_pred ---C------------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEee
Confidence 1 15899999999999999999999997444455667788876 5678999999
Q ss_pred cCCCCcceecCcccc
Q 002301 418 SNYSGLSVVRPETLY 432 (940)
Q Consensus 418 ~~~~gl~~~~~~~~~ 432 (940)
....|..+.+|+..+
T Consensus 358 ~~~~~~~~~p~~~~~ 372 (387)
T 3i45_A 358 RYVDGGSVLPPPEVV 372 (387)
T ss_dssp EEECGGGGSCCHHHH
T ss_pred EEeCchhcCCCHHHH
Confidence 988887776665443
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=8.1e-39 Score=364.56 Aligned_cols=345 Identities=14% Similarity=0.089 Sum_probs=282.0
Q ss_pred CCceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC-CCHHHHHHHHHHHHh-cCcEEEEc
Q 002301 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN-HSGFLALAEALHLME-GQTVAIIG 102 (940)
Q Consensus 28 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~-~~~~~a~~~a~~li~-~~v~aiiG 102 (940)
..++|+||+++|++. ..|.....|+++|+++||+++|++ |++|+++++|++ |++..+...+.+|+. ++|.+|||
T Consensus 11 ~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG 89 (419)
T 3h5l_A 11 SSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIA 89 (419)
T ss_dssp --CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEC
T ss_pred cCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEc
Confidence 456899999999985 458889999999999999999997 899999999997 699999999999999 69999999
Q ss_pred CCCchhHHHHHHhhccCCccEEeeecCCCCCC-----C-CCCCceEEecCChHHHHHHHHHHHHHc--------CCeEEE
Q 002301 103 PQDAVTSHVVSHVANELQVPLLSFSATDPTLS-----S-LQFPYFVRTTQSDQYQMAAIAEIVDHY--------GWREVI 168 (940)
Q Consensus 103 p~~s~~a~~va~~~~~~~vP~Is~~at~~~ls-----~-~~~p~~~r~~psd~~~~~ai~~~l~~~--------~w~~v~ 168 (940)
|.+|..+.++++++++++||+|+++ +++.+. + ..|||+||+.|++..++.+++++++++ +|++|+
T Consensus 90 ~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 168 (419)
T 3h5l_A 90 GYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIA 168 (419)
T ss_dssp SCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEE
T ss_pred cccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEE
Confidence 9999999999999999999999963 443322 2 468999999999999999999999886 899999
Q ss_pred EEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec-CCcHHHHHHHHHHcCCC
Q 002301 169 AIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVAQYLGML 247 (940)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~-~~~~~~~l~~a~~~g~~ 247 (940)
+|++|++||+...+.|++.+++.|++|+..+.++ .+..|+..++++|++.++|+|++.+. +.++..++++++++|+
T Consensus 169 il~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~- 245 (419)
T 3h5l_A 169 IITGPGIYSVNIANAIRDGAGEYGYDVSLFETVA--IPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPT- 245 (419)
T ss_dssp EEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECC--SSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCC-
T ss_pred EEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCC--CCCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999988888 45678999999999999999999865 4678999999999998
Q ss_pred CCCeEEEecCccccccCCCCCCCCccccccceeEEEEEe-cCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHH
Q 002301 248 GTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTY-TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTV 326 (940)
Q Consensus 248 ~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv 326 (940)
...|+.++.+.... .. .......+|++....+ .++.+..++|.++|+++++. .+.+.++..+|||+
T Consensus 246 --~~~~~~~~~~~~~~-~~----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~------~p~~~~a~~~Yda~ 312 (419)
T 3h5l_A 246 --NSLVYLQYGASLAA-FR----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD------LSSTASGCQTYSAL 312 (419)
T ss_dssp --SCEEEECSGGGSHH-HH----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT------TSCHHHHHHHHHHH
T ss_pred --CceEEecCCCCcHH-HH----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC------CCCcchhHHHHHHH
Confidence 34567666543211 10 1223457787766543 34678899999999999863 22235899999999
Q ss_pred HHHHHHHHHHhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCC---------
Q 002301 327 WLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLI--------- 397 (940)
Q Consensus 327 ~~la~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~--------- 397 (940)
+++++|++++..... .+.+.++..|.++|++++|+|++|+++||++|+..
T Consensus 313 ~~~~~a~~~a~~~~~---------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~ 371 (419)
T 3h5l_A 313 YAYSIAAALAGGPGA---------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETND 371 (419)
T ss_dssp HHHHHHHHHTTSCCC---------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSC
T ss_pred HHHHHHHHHhcCCcc---------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCC
Confidence 999999998632110 01122588999999999999999999999999732
Q ss_pred ---CCceEEEEeeccce
Q 002301 398 ---NPAYEIINVIGTGY 411 (940)
Q Consensus 398 ---~~~~~I~~~~~~~~ 411 (940)
...+.|+|++++++
T Consensus 372 ~~~~~~~~i~q~q~g~~ 388 (419)
T 3h5l_A 372 PSLGMPHIFSQIFDKAE 388 (419)
T ss_dssp TTSSEECEEEECCCTTS
T ss_pred ccccCCceEEEeeCCce
Confidence 12355777777766
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=8.3e-38 Score=349.70 Aligned_cols=336 Identities=16% Similarity=0.183 Sum_probs=286.2
Q ss_pred CceEEEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-CHHHHHHHHHHHHhc-CcEEEEcC
Q 002301 29 PSVVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAEALHLMEG-QTVAIIGP 103 (940)
Q Consensus 29 ~~~i~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~-~~~~a~~~a~~li~~-~v~aiiGp 103 (940)
.++||||+++|+| +..|+..+.|+++|++++| +++ .|++|+++++|+.+ +|..++..+.+|+++ +|.+||||
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~ 79 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGL 79 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4689999999998 4568889999999999998 666 59999999999986 899999999999986 99999999
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHH
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (940)
.+|..+.++++++++.++|+|+++++++.++.. .||+||+.+++..++.++++++++.+|++|++|+.|++||+...+.
T Consensus 80 ~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~ 158 (371)
T 4f06_A 80 YFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETA 158 (371)
T ss_dssp CSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHH
Confidence 999999999999999999999999999888754 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 002301 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~ 262 (940)
+++.+++.|++|+....++ .+.+|++.++.+|++.++|+|++.+.. .....+++++.+.|+....+.++.++.....
T Consensus 159 ~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (371)
T 4f06_A 159 FKKTFEAEGGKVVEAVRMP--LSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTE 236 (371)
T ss_dssp HHHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCG
T ss_pred HHHHHHhcCCceEEEEecC--cccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCCH
Confidence 9999999999999999998 567789999999999999999887654 5777899999999998777777665543222
Q ss_pred cCCCCCCCCccccccceeEEEEEecC--CChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcC
Q 002301 263 LDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQG 340 (940)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~ 340 (940)
... ....+...|++...++.+ ++|..++|.++|+++++. ...++.++..+||+++++++|+++. +
T Consensus 237 ~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~-----~~~~~~~a~~~Yda~~~l~~Ai~~~---a 303 (371)
T 4f06_A 237 PDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAK-----LDEVTMTSVAAYDGARLIYKMIEAT---S 303 (371)
T ss_dssp GGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCC-----GGGCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred HHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCC-----CCCccchHHHHHHHHHHHHHHHHHh---c
Confidence 111 123356678888776654 478899999999988752 2346778999999999999999873 2
Q ss_pred CCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEee
Q 002301 341 GNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI 407 (940)
Q Consensus 341 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~ 407 (940)
+. .+++.++++|++++|+|++|+++||++++.....+.|.+++
T Consensus 304 g~------------------------~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 304 GK------------------------SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVE 346 (371)
T ss_dssp TS------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEE
T ss_pred CC------------------------CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEE
Confidence 21 15899999999999999999999998776555667788886
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=9.7e-38 Score=347.68 Aligned_cols=344 Identities=15% Similarity=0.160 Sum_probs=295.9
Q ss_pred ceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 30 SVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 30 ~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
++|+||+++|++. ..|.....|+++|++++|+++|+ +|+++++++.|+++++..+.+.+.+|++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 4799999999984 46788899999999999999998 5999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcCCcchhhHHHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHYGWREVIAIYVDDDHGRNGIAALG 185 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (940)
..+.++++++...++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++++|+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999999988888778999999999999999999965 66799999999999999999999999
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCC
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (940)
+.+++.|++++....++ .+..++...++++++.++++|++++....+..++++++++|+..+ |++++++......
T Consensus 160 ~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~~~ 234 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVN--VGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSNELA 234 (356)
T ss_dssp HHHHHTTCCCSEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSHHHH
T ss_pred HHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCHHHH
Confidence 99999999998777776 456678889999999999999999998899999999999998754 6766544321100
Q ss_pred CCCCCCccccccceeEEEEEecC-CChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCcc
Q 002301 266 NSPFPSDVMDDIQGVLTLRTYTP-DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (940)
Q Consensus 266 ~~~~~~~~~~~~~g~l~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 344 (940)
.......+|++...++.+ ..+..++|.++|+++ + ..++.++..+|||++++++|++++. .
T Consensus 235 -----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~-------~~p~~~~~~~yda~~~~~~al~~ag---~--- 295 (356)
T 3ipc_A 235 -----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G-------FNPEAYTLYSYAAMQAIAGAAKAAG---S--- 295 (356)
T ss_dssp -----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T-------CCCCTTHHHHHHHHHHHHHHHHHHT---C---
T ss_pred -----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C-------CCcchhHHHHHHHHHHHHHHHHHhC---C---
Confidence 112345788877766654 467889999999987 4 2356789999999999999999961 1
Q ss_pred cccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeec---cceEEEEEecCC
Q 002301 345 FSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIG---TGYRRIGYWSNY 420 (940)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~---~~~~~VG~w~~~ 420 (940)
.++..+.++|++.+|+|++|+++||++|++....+.|+++++ +.|+.+..|.+.
T Consensus 296 ----------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 ----------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp ----------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred ----------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 158999999999999999999999999998878899999995 899999998654
No 21
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-37 Score=344.81 Aligned_cols=342 Identities=17% Similarity=0.213 Sum_probs=293.6
Q ss_pred CCCceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEc
Q 002301 27 GRPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIG 102 (940)
Q Consensus 27 ~~~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 102 (940)
..+.+++||+++|++. ..|.....|+++|++++|+ + .|++++++++|+++++..+.+.+.+|+++ +|.+|||
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 4456899999999994 4578889999999999998 5 49999999999999999999999999998 5999999
Q ss_pred CCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEE-cCCcchhh
Q 002301 103 PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHYGWREVIAIYV-DDDHGRNG 180 (940)
Q Consensus 103 p~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l-~~~~w~~v~ii~~-d~~~g~~~ 180 (940)
|.+|..+.+++++++.+++|+|++.++++.+++ .+|++||+.|++..++.++++++ +++||++|++||. +++||...
T Consensus 88 ~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~ 166 (366)
T 3td9_A 88 EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGL 166 (366)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHH
Confidence 999999999999999999999999888887754 57999999999999999999998 6689999999987 78899999
Q ss_pred HHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccc
Q 002301 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLS 260 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~ 260 (940)
.+.+++.+++.|++++... ++ .+..++...++++++.++++|++.+....+..+++++++.|+..+ |++++.+.
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~ 240 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FR--SGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTGY---ILAGDGAD 240 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EC--TTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCSE---EEECGGGC
T ss_pred HHHHHHHHHHCCCEEEEEE-eC--CCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCce---EEeeCCcC
Confidence 9999999999999999887 76 456778889999999999999998888999999999999998654 67665543
Q ss_pred cccCCCCCCCCccccccceeEEEEEecCC---ChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHh
Q 002301 261 TALDTNSPFPSDVMDDIQGVLTLRTYTPD---SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFF 337 (940)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~ 337 (940)
..... .......+|++....+.|. .+..++|.++|+++++ ..++.++..+|||++++++|++++.
T Consensus 241 ~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~yda~~~~~~al~~ag 308 (366)
T 3td9_A 241 APELI-----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG-------KEPAALNALGYDAYMVLLDAIERAG 308 (366)
T ss_dssp STHHH-----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHH-----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC-------CCCchhHHHHHHHHHHHHHHHHHhC
Confidence 21100 1223567888888876664 6789999999999886 3468899999999999999999961
Q ss_pred hcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhcc-ccccceeEEEccCCCCCCCceEEEEeeccceEEEEE
Q 002301 338 KQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQAN-MTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGY 416 (940)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~-f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~ 416 (940)
. .++..+.++|++++ |+|++|+++||++|++. ..+.|+++++++++.|+.
T Consensus 309 ---~-------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~ 359 (366)
T 3td9_A 309 ---S-------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAV 359 (366)
T ss_dssp ---S-------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEE
T ss_pred ---C-------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEe
Confidence 1 15899999999998 99999999999999876 458999999999999999
Q ss_pred ecCC
Q 002301 417 WSNY 420 (940)
Q Consensus 417 w~~~ 420 (940)
|++.
T Consensus 360 ~~~~ 363 (366)
T 3td9_A 360 INPD 363 (366)
T ss_dssp ECGG
T ss_pred cChh
Confidence 9865
No 22
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.2e-36 Score=336.13 Aligned_cols=337 Identities=17% Similarity=0.230 Sum_probs=277.4
Q ss_pred CCceEEEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEcC
Q 002301 28 RPSVVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGP 103 (940)
Q Consensus 28 ~~~~i~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 103 (940)
.+++|+||+++|+| +..|.....|+++|+|+||++||++ |++|+++++|++++|..++.++.+|+++ +|.+|+||
T Consensus 4 ~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~ 82 (353)
T 4gnr_A 4 EEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGP 82 (353)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEecc
Confidence 46799999999998 4568889999999999999999996 9999999999999999999999999987 78999999
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcC-CeEEEEEEEc-CCcchhhH
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG-WREVIAIYVD-DDHGRNGI 181 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~-w~~v~ii~~d-~~~g~~~~ 181 (940)
.+|..+.+++++++++++|+|++.++++.++. .++|+||+.|++..++.++++++...+ ++++++++.+ ++||+...
T Consensus 83 ~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 161 (353)
T 4gnr_A 83 ATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIA 161 (353)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHH
T ss_pred ccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHH
Confidence 99999999999999999999999999988875 458999999999999999999986655 4555555544 45888777
Q ss_pred HHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCcccc
Q 002301 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLST 261 (940)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~ 261 (940)
+.+.+. .|++++....++ .+..|++.++.++++.++|+|++.+...++..++++++++|+..+ |+..+++..
T Consensus 162 ~~~~~~---~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~ 233 (353)
T 4gnr_A 162 KSFRES---YKGEIVADETFV--AGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDGFNG 233 (353)
T ss_dssp HHHHHH---CCSEEEEEEEEC--TTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGGGCS
T ss_pred HHHHHH---cCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEeccccc
Confidence 766543 478899888888 566789999999999999999999999999999999999998765 555544332
Q ss_pred ccCCCCCCCCccccccceeEEEEEecC---CChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhh
Q 002301 262 ALDTNSPFPSDVMDDIQGVLTLRTYTP---DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFK 338 (940)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~l~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~ 338 (940)
..... ....+..+|++....+.+ ..+..++|.++|+++++ ..++.++..+|||++++++|++++
T Consensus 234 ~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~la~Ai~~a-- 300 (353)
T 4gnr_A 234 EEFVQ----QATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN-------EEPSTFAALAYDSVHLVANAAKGA-- 300 (353)
T ss_dssp HHHHH----HHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred chhhh----hhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC-------CCCChhHHHHHHHHHHHHHHHhcC--
Confidence 11000 011245667776665443 45778999999999986 356889999999999999999762
Q ss_pred cCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhc-cccccceeEEEccCCCCCCCceEEEEeeccceEEEEE
Q 002301 339 QGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGY 416 (940)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~-~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~ 416 (940)
+ ++..+.++|+++ +|+|++|+++||+||++. ..+.|++++++.++.+..
T Consensus 301 --~--------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~ 350 (353)
T 4gnr_A 301 --K--------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAEV 350 (353)
T ss_dssp --S--------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEEE
T ss_pred --C--------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEEE
Confidence 1 478899999988 499999999999999865 556799999988877654
No 23
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=2e-36 Score=335.71 Aligned_cols=339 Identities=15% Similarity=0.181 Sum_probs=287.4
Q ss_pred ceEEEEEEeecCCc---chhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 30 SVVNIGALLSFSTN---VGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 30 ~~i~IG~l~~~~~~---~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
++|+||+++|++.. .|.....|+++|+++||+++|+ +|+++++++.|+++++..+.+.+.+|++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 37999999999743 5778899999999999999998 6999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcCCcchhhHHHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHYGWREVIAIYVDDDHGRNGIAALG 185 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (940)
..+.++.+++...++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++++|....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 98888999999999999999888887776558999999999999999999997 56899999999999999999999999
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCC
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (940)
+.+++.|++++....++. +..++...++++++.++++|++.+....+..++++++++|+..+ |++++.+... ..
T Consensus 160 ~~l~~~g~~v~~~~~~~~--~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~-~~ 233 (346)
T 1usg_A 160 DGLKAANANVVFFDGITA--GEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA-SL 233 (346)
T ss_dssp HHHHHTTCCEEEEEECCT--TCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT-TH
T ss_pred HHHHHcCCEEEEEeccCC--CCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH-HH
Confidence 999999999987766763 34567788999998899999998877788899999999998765 7877654321 00
Q ss_pred CCCCCCccccccceeEEEEEec-CCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCcc
Q 002301 266 NSPFPSDVMDDIQGVLTLRTYT-PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (940)
Q Consensus 266 ~~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 344 (940)
. .......+|++...++. ++.+..++|.++|++.++ ..++.++..+|||++++++|++++. .
T Consensus 234 ~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~yda~~~~~~al~~~g----~-- 296 (346)
T 1usg_A 234 S----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK-------DPSGPYVWITYAAVQSLATALERTG----S-- 296 (346)
T ss_dssp H----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC-------CCCCHHHHHHHHHHHHHHHHHHHHC----C--
T ss_pred H----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHHHHHHHHhC----C--
Confidence 0 11224578888776653 356788999999998775 2457789999999999999999961 1
Q ss_pred cccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEee-ccceEEE
Q 002301 345 FSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI-GTGYRRI 414 (940)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~-~~~~~~V 414 (940)
.+++.|.++|++.+|+|++|+++||++|++....|.|++++ ++.++.|
T Consensus 297 ----------------------~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 ----------------------DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp ----------------------CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred ----------------------CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 14889999999999999999999999999876789999999 7777654
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=2.8e-36 Score=336.15 Aligned_cols=343 Identities=16% Similarity=0.187 Sum_probs=293.7
Q ss_pred ceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHH-hcCcEEEEcCCC
Q 002301 30 SVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLM-EGQTVAIIGPQD 105 (940)
Q Consensus 30 ~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li-~~~v~aiiGp~~ 105 (940)
++|+||+++|++. ..|.....|+++|++++|+++|++ |+++++++.|+++++..+.+.+.+|+ +++|.+||||.+
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 5899999999974 457788999999999999999997 99999999999999999999999999 679999999999
Q ss_pred chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHH
Q 002301 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALG 185 (940)
Q Consensus 106 s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (940)
+..+.++++++...++|+|++.++++.+++.. |++||+.|++..++.++++++...||++|++|+.++++|....+.++
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~ 160 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFR 160 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHH
Confidence 99999999999999999999988888887654 99999999999999999999888899999999999999999999999
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCC
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (940)
+.+++.|++++....++ .+..++...++++++.++++|++.+....+..++++++++|+..+ |++++.+......
T Consensus 161 ~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~~~~ 235 (358)
T 3hut_A 161 KAFELRGGAVVVNEEVP--PGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSPKFI 235 (358)
T ss_dssp HHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSHHHH
T ss_pred HHHHHcCCEEEEEEecC--CCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCHHHH
Confidence 99999999998877776 345677888999998899999999888899999999999998655 7776654321100
Q ss_pred CCCCCCccccccceeEEEEEecC--CChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCc
Q 002301 266 NSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNL 343 (940)
Q Consensus 266 ~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~ 343 (940)
.......+|++...++.+ ..+..++|.++|+++++ ..++.++..+|||++++++|++++. .
T Consensus 236 -----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~al~~ag---~-- 298 (358)
T 3hut_A 236 -----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG-------AIPTLFAAHGYDAVGIMLAAVGRAG---P-- 298 (358)
T ss_dssp -----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHC---T--
T ss_pred -----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHhC---C--
Confidence 122356788888887765 46789999999999886 3568899999999999999999961 1
Q ss_pred ccccCCCcccccCCccCCcccccCChHH-HHHHHHhc-cccccceeEEEccCCCCCCCceEEEEeeccceEEEEEecC
Q 002301 344 SFSKDSRLSDIQGHLRLDSLRIFNGGNL-LRDSILQA-NMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSN 419 (940)
Q Consensus 344 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~-l~~~l~~~-~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~ 419 (940)
.++.. +.++|+++ +|+|++|+++||++|++....+.|+++++++|+.+..+.+
T Consensus 299 -----------------------~~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 299 -----------------------EVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp -----------------------TCCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred -----------------------CChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 14677 99999999 8999999999999998756788999999999988866544
No 25
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-36 Score=343.68 Aligned_cols=351 Identities=11% Similarity=0.020 Sum_probs=295.3
Q ss_pred CceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEcCC
Q 002301 29 PSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQ 104 (940)
Q Consensus 29 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 104 (940)
.++|+||+++|++. ..|.....|+++|+++||+++|++ |++++++++|+++++..+.+.+.+|+++ +|.+||| .
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~ 82 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-Y 82 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-C
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-C
Confidence 56999999999984 457788999999999999999996 8999999999999999999999999997 9999999 6
Q ss_pred CchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCChHHHHHHHHHHHHH-cCCeEEEEEEEcCCcchhhHH
Q 002301 105 DAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDH-YGWREVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 105 ~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~psd~~~~~ai~~~l~~-~~w~~v~ii~~d~~~g~~~~~ 182 (940)
+|..+.++++++...+||+|+++++++ +.+ ..+|++||+.|++..++.++++++.. +||++|++|+.+++||+...+
T Consensus 83 ~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~ 161 (392)
T 3lkb_A 83 ATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVE 161 (392)
T ss_dssp CHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHH
T ss_pred CcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHH
Confidence 888888999999999999999766544 444 56899999999999999999999866 699999999999999999999
Q ss_pred HHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 002301 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~ 262 (940)
.+++.+++.|++++....++ .+..++...++++++.++++|++.+....+..++++++++|+..+ |+.++++...
T Consensus 162 ~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~ 236 (392)
T 3lkb_A 162 DARKAARELGLQIVDVQEVG--SGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMR---HLGAHYTGGP 236 (392)
T ss_dssp HHHHHHHHHTCEEEEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCSH
T ss_pred HHHHHHHHcCCeEEEEEeeC--CCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEEecCcccH
Confidence 99999999999999888777 456678899999999999999999999999999999999998654 6666544321
Q ss_pred cCCCCCCCCccccccceeEEEEEecCC--ChhHHHHHHHHHhhccCCCCCCCCCCC----chhhhhhhHHHHHHHHHHHH
Q 002301 263 LDTNSPFPSDVMDDIQGVLTLRTYTPD--SVLKRKFISRWRNLTDAKTPNGYIGLN----AYGFYAYDTVWLLARAINSF 336 (940)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~l~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~YDAv~~la~Al~~~ 336 (940)
... .......+|++...++.+. .+..++|.++|+++++. .++ .++..+|||++++++|++++
T Consensus 237 ~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~p~~~~~~~~~~~yda~~~~~~al~~a 304 (392)
T 3lkb_A 237 DLI-----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR-------PENFIESVNYTNGMLAAAIAVEAIRRA 304 (392)
T ss_dssp HHH-----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC-------CHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC-------CcccccchhHHHHHHHHHHHHHHHHHh
Confidence 100 1123467888888766442 45678999999998862 233 34789999999999999997
Q ss_pred hhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhcc----cc-------ccceeEEEccCCCCCCCceEEEE
Q 002301 337 FKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQAN----MT-------GTAGPARFNSHGDLINPAYEIIN 405 (940)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~----f~-------g~tG~v~Fd~~G~~~~~~~~I~~ 405 (940)
...++. .++..|.++|++++ |+ |++|+++|+++|++....+.|++
T Consensus 305 g~~~~~------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~ 360 (392)
T 3lkb_A 305 QERFKR------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILE 360 (392)
T ss_dssp HHHHSS------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEE
T ss_pred hccCCC------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEE
Confidence 432111 15899999999997 98 99999999998876667789999
Q ss_pred eeccceEEEEEecCCCCc
Q 002301 406 VIGTGYRRIGYWSNYSGL 423 (940)
Q Consensus 406 ~~~~~~~~VG~w~~~~gl 423 (940)
+++++++.|+.|....++
T Consensus 361 ~~~g~~~~v~~w~~~~~~ 378 (392)
T 3lkb_A 361 AKGGRFVPVTEPFTSALF 378 (392)
T ss_dssp EETTEEEECSCCBCCHHH
T ss_pred EeCCEEEEeccccchhHH
Confidence 999999999999876654
No 26
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=7.6e-36 Score=334.81 Aligned_cols=334 Identities=15% Similarity=0.175 Sum_probs=288.1
Q ss_pred CceEEEEEEeecCC---cc-hhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh-cCcEEEEcC
Q 002301 29 PSVVNIGALLSFST---NV-GKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME-GQTVAIIGP 103 (940)
Q Consensus 29 ~~~i~IG~l~~~~~---~~-g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 103 (940)
.++|+||+++|++. .. |.....|+++|++++ ++|+ .|++++++++|+++++..+...+.+|++ ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 35899999999983 34 788999999999999 4677 4899999999999999999999999998 699999999
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHH
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (940)
.+|..+.++++++..+++|+|++.++++.+++ ..+||+||+.+++..++.++++++.++||++|++|+.|++||+...+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888888887 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 002301 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~ 262 (940)
.+++.+++.|++|+....++ .+..|+...+.++++.++++|++.+...++..++++++++|+..+. .++..+.+...
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~ 235 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHP--LSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFIND 235 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEC--TTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHHH
T ss_pred HHHHHHHHcCCEEeeeeeCC--CCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchhh
Confidence 99999999999999888887 3567888999999999999999999888999999999999998776 55554444322
Q ss_pred cCCCCCCCCccccccceeEEEEEecCC-ChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCC
Q 002301 263 LDTNSPFPSDVMDDIQGVLTLRTYTPD-SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGG 341 (940)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~l~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~ 341 (940)
+.. -..+..+|++...++.++ .+..++|.++|+++++ ..++.++..+|||++++++|++++. .
T Consensus 236 ~~~------~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~~~~Al~~ag---~ 299 (375)
T 3i09_A 236 VHA------LGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK-------KMPSSLQAADYSSVTTYLKAVQAAG---S 299 (375)
T ss_dssp HHH------HCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHT---S
T ss_pred Hhh------hChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHHhC---C
Confidence 111 112457888877766554 6789999999999886 3567899999999999999999961 1
Q ss_pred CcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccc
Q 002301 342 NLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTG 410 (940)
Q Consensus 342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~ 410 (940)
.++..|.++|++++|+|++|.+.|++||++. ..+.|+++++++
T Consensus 300 -------------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 300 -------------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp -------------------------CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred -------------------------CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 1589999999999999999999999999875 567788887543
No 27
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=1.3e-35 Score=333.16 Aligned_cols=345 Identities=13% Similarity=0.183 Sum_probs=295.0
Q ss_pred CCceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEcC
Q 002301 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGP 103 (940)
Q Consensus 28 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 103 (940)
..++++||+++|++. ..|.....|+++|++++| +++ +|+++++++.|+++++..+...+.+|+++ +|.+||||
T Consensus 13 ~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 89 (375)
T 4evq_A 13 QAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGT 89 (375)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEEC
T ss_pred hCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 346899999999974 457788999999999998 444 79999999999999999999999999986 99999999
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHH
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSL-QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~-~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (940)
.++..+.++++++...++|+|++.++++.+++. .+|++||+.|++..++.++++++.++||++|++|+.|+++|+...+
T Consensus 90 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~ 169 (375)
T 4evq_A 90 VHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVS 169 (375)
T ss_dssp SSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHH
Confidence 999999999999999999999999888888773 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 002301 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~ 262 (940)
.+++.+++.|++++....++ .+..++...++++++.++++|++.+....+..++++++++|+..+ |+.+++....
T Consensus 170 ~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~~~~~~ 244 (375)
T 4evq_A 170 GFKKSFTAGKGEVVKDITIA--FPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPGFLTDG 244 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEGGGTTT
T ss_pred HHHHHHHHcCCeEEEEEecC--CCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecCcCCHH
Confidence 99999999999998877776 345678888999998899999998888999999999999998754 5555432111
Q ss_pred cCCCCCCCCccccccceeEEEEEecC--CChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcC
Q 002301 263 LDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQG 340 (940)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~ 340 (940)
.. .......+|++...++.+ +.+..++|.++|+++++ ..++.++..+|||++++++|++++.
T Consensus 245 --~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~al~~~g--- 308 (375)
T 4evq_A 245 --VE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK-------IPPDVFAVQGWDAGQLLDAGVKAVG--- 308 (375)
T ss_dssp --TH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred --HH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHHhC---
Confidence 10 122356789888877665 36889999999999886 3567889999999999999999851
Q ss_pred CCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEEEEecCC
Q 002301 341 GNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNY 420 (940)
Q Consensus 341 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~ 420 (940)
. .+.++..|.++|++++|+|++|+++||++|++. ..+.|+++++++++.|+.+.+.
T Consensus 309 ~-----------------------~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 364 (375)
T 4evq_A 309 G-----------------------DVAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAPA 364 (375)
T ss_dssp T-----------------------CTTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEECS
T ss_pred C-----------------------CCCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhhc
Confidence 1 012589999999999999999999999999864 6799999999999999988543
No 28
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=1.2e-35 Score=333.65 Aligned_cols=335 Identities=14% Similarity=0.113 Sum_probs=285.8
Q ss_pred CceEEEEEEeecCC---cc-hhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh-cCcEEEEcC
Q 002301 29 PSVVNIGALLSFST---NV-GKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME-GQTVAIIGP 103 (940)
Q Consensus 29 ~~~i~IG~l~~~~~---~~-g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 103 (940)
.++|+||+++|++. .. |.....|+++|++++ ++|+ .|++++++++|+++++..+...+.+|++ ++|.+||||
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 80 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDV 80 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 46899999999983 34 788999999999999 4667 4899999999999999999999999998 699999999
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHH
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (940)
.+|..+.+++++++.+++|+|++.++++.+++ ..+||+||+.|++..++.++++++.++||++|++|+.|++||+...+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 160 (379)
T 3n0w_A 81 VNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNA 160 (379)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHH
Confidence 99999999999999999999999999988887 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 002301 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~ 262 (940)
.+++.+++.|++|+....++ .+..|+...+.++++.++++|++.+...++..++++++++|+..+.+.+....++...
T Consensus 161 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (379)
T 3n0w_A 161 AIRRELTAGGGQIVGSVRFP--FETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQKVGGMIDILTD 238 (379)
T ss_dssp HHHHHHHHHTCEEEEEEEEC--TTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSCEEECCBCCHHH
T ss_pred HHHHHHHHcCCEEEEEEeCC--CCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCcEEEecccchHH
Confidence 99999999999999888887 3556788999999999999999999888999999999999998765444333333222
Q ss_pred cCCCCCCCCccccccceeEEEEEecCC-ChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCC
Q 002301 263 LDTNSPFPSDVMDDIQGVLTLRTYTPD-SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGG 341 (940)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~l~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~ 341 (940)
+. .-..+..+|++...++.++ .+..++|.++|+++++ ..++.++..+|||++++++|++++. .
T Consensus 239 ~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~Yda~~~~~~Al~~ag---~ 302 (379)
T 3n0w_A 239 VK------SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG-------KMPTNNQAGGYSAALQYLKAVNAIG---S 302 (379)
T ss_dssp HH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHT---C
T ss_pred HH------hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC-------CCCChHHHHHHHHHHHHHHHHHHhC---C
Confidence 11 1112457888877776554 6789999999999886 3568899999999999999999961 1
Q ss_pred CcccccCCCcccccCCccCCcccccCChHHHHHHHHhcccccccee-EEEccCCCCCCCceEEEEeeccc
Q 002301 342 NLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGP-ARFNSHGDLINPAYEIINVIGTG 410 (940)
Q Consensus 342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~-v~Fd~~G~~~~~~~~I~~~~~~~ 410 (940)
.++..|.++|++++|+|+.|. +.|++||++. ..+.|+++++++
T Consensus 303 -------------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 -------------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp -------------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGG
T ss_pred -------------------------CCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchh
Confidence 158999999999999999986 9999999864 678899987643
No 29
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=1.6e-35 Score=334.01 Aligned_cols=351 Identities=15% Similarity=0.149 Sum_probs=290.2
Q ss_pred CceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCC-CCC--EEEEEEecCCCCHHHHHHHHHHHH-hcCcEEEE
Q 002301 29 PSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTL-GGT--KLKLQMQDCNHSGFLALAEALHLM-EGQTVAII 101 (940)
Q Consensus 29 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL-~g~--~l~~~~~D~~~~~~~a~~~a~~li-~~~v~aii 101 (940)
.++|+||+++|++. ..|.....|+++|+++||+++|++ +|+ +|+++++|+++++..+.+.+.+|+ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 35899999999984 457788999999999999999985 699 999999999999999999999999 66999999
Q ss_pred cCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHH-cCCeEEEEEEE-cCCcchh
Q 002301 102 GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-YGWREVIAIYV-DDDHGRN 179 (940)
Q Consensus 102 Gp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~-~~w~~v~ii~~-d~~~g~~ 179 (940)
| .+|..+.++++++...+||+|++.++++ +. .+|++||+.|++..++.++++++.+ +||++|++|+. |++||+.
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6888899999999999999999766544 33 6799999999999999999999876 79999999999 9999999
Q ss_pred hHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHH--HhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecC
Q 002301 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVK--VALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATS 257 (940)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~--l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~ 257 (940)
..+.+++.+++.|++++....++ .+..++...+.+ +++.++++|++.+....+..++++++++|+..+ |+.++
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 232 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLP--LRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLTNV 232 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECC--TTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEECG
T ss_pred HHHHHHHHHHHcCCceeeeeccC--CCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEEec
Confidence 99999999999999999888887 456789999999 999999999999988899999999999998654 55554
Q ss_pred ccccccCCCCCCCCccccccce-eEEEEEec-----CCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHH
Q 002301 258 WLSTALDTNSPFPSDVMDDIQG-VLTLRTYT-----PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 331 (940)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~ 331 (940)
+.... ... .......+| ++...++. ++.+. .+|.++|+++++. .....+.++..+|||++++++
T Consensus 233 ~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~----~~p~~~~~~~~~yda~~~l~~ 302 (391)
T 3eaf_A 233 WGFDE-RSP----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGV----SEDQINLRVVQGFVNVWLLIK 302 (391)
T ss_dssp GGCST-THH----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTC----CGGGCCHHHHHHHHHHHHHHH
T ss_pred cCCCH-HHH----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCC----CCcccccHHHHHHHHHHHHHH
Confidence 33211 110 122356789 77777665 34454 6799999998851 011135789999999999999
Q ss_pred HHHHHhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhcccc--ccce-eEEEccCCCCCCCceEEEEe-e
Q 002301 332 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMT--GTAG-PARFNSHGDLINPAYEIINV-I 407 (940)
Q Consensus 332 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~--g~tG-~v~Fd~~G~~~~~~~~I~~~-~ 407 (940)
|++++.+.+.. ..++..|.++|++.+|+ |++| +++||++|++....+.|.++ +
T Consensus 303 Al~~a~~~g~~-----------------------~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~ 359 (391)
T 3eaf_A 303 AIESVTSQDLQ-----------------------ERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGE 359 (391)
T ss_dssp HHTTSCHHHHH-----------------------HHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECT
T ss_pred HHHHHHhcCCC-----------------------CCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEec
Confidence 99985211100 01589999999998898 9999 99999876566788999999 8
Q ss_pred ccceEEEEEecCCC
Q 002301 408 GTGYRRIGYWSNYS 421 (940)
Q Consensus 408 ~~~~~~VG~w~~~~ 421 (940)
++.++.|+.|....
T Consensus 360 ~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 360 NGELQLMGKFEAPS 373 (391)
T ss_dssp TSSEEEEEEECCCT
T ss_pred CCEEEEeeeecCcc
Confidence 89999999996543
No 30
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=3.8e-35 Score=328.37 Aligned_cols=345 Identities=17% Similarity=0.213 Sum_probs=292.0
Q ss_pred CceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh-cCcEEEEcCC
Q 002301 29 PSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME-GQTVAIIGPQ 104 (940)
Q Consensus 29 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp~ 104 (940)
.++|+||+++|++. ..|.....|+++|++++|. ++ +|++|+++++|+++++..+.+.+.+|++ ++|.+||||.
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~ 80 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFG 80 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCC
Confidence 56899999999984 4577889999999999973 34 6999999999999999999999999998 6999999999
Q ss_pred CchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHH
Q 002301 105 DAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAAL 184 (940)
Q Consensus 105 ~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 184 (940)
+|..+.++++++...++|+|++.++++.+++. +|++||+.|++..++.++++++.++||++|++|+.|+++|....+.+
T Consensus 81 ~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~ 159 (368)
T 4eyg_A 81 ITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFF 159 (368)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHH
Confidence 99999999999999999999998888877665 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccC
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALD 264 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~ 264 (940)
++.+++.|++++....++ .+..++...++++++.++++|++.+....+..++++++++|+..+++.|++++++.....
T Consensus 160 ~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~ 237 (368)
T 4eyg_A 160 KERFTAGGGEIVEEIKVP--LANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDDL 237 (368)
T ss_dssp HHHHHHTTCEEEEEEEEC--SSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHHH
T ss_pred HHHHHHcCCEEEEEEeCC--CCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHHH
Confidence 999999999999887777 355678899999999999999998888899999999999999866678888874332111
Q ss_pred CCCCCCCccccccceeEEEEEecC--CChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCC
Q 002301 265 TNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGN 342 (940)
Q Consensus 265 ~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 342 (940)
. .......+|++...++.+ +.+..++|.++| ++++. ..++.++..+|||++++++|++++ ++.
T Consensus 238 ~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~------~~p~~~~~~~yda~~~~~~al~~~---g~~ 302 (368)
T 4eyg_A 238 L-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG------QRPGFMAVGGYDGIHLVFEALKKT---GGK 302 (368)
T ss_dssp H-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS------SCCCHHHHHHHHHHHHHHHHHHHT---TTC
T ss_pred H-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC------CCCChHHHHHHHHHHHHHHHHHHh---CCC
Confidence 1 112255788888777654 468899999999 77731 356889999999999999999995 111
Q ss_pred cccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEc-cCCCCCCCceEEEEee--ccceE--EEEEe
Q 002301 343 LSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFN-SHGDLINPAYEIINVI--GTGYR--RIGYW 417 (940)
Q Consensus 343 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd-~~G~~~~~~~~I~~~~--~~~~~--~VG~w 417 (940)
.++..|.++|++++|+|++|+++|| ++|+. ...+.|.+++ ++.++ .++.|
T Consensus 303 ------------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~~~ 357 (368)
T 4eyg_A 303 ------------------------ADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFAKF 357 (368)
T ss_dssp ------------------------CSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ------------------------CCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEeecc
Confidence 1589999999999999999999999 67764 5677899998 67774 45555
Q ss_pred cC
Q 002301 418 SN 419 (940)
Q Consensus 418 ~~ 419 (940)
.+
T Consensus 358 ~~ 359 (368)
T 4eyg_A 358 DA 359 (368)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=1.4e-35 Score=332.26 Aligned_cols=331 Identities=14% Similarity=0.115 Sum_probs=272.2
Q ss_pred ceEEEEEEeecCC---cchhHHHHHHHHHHHHHhc-CCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEcCC
Q 002301 30 SVVNIGALLSFST---NVGKVAKLAIKAAVDDVNS-DPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQ 104 (940)
Q Consensus 30 ~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~-~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 104 (940)
++|+||+++|++. ..|.....|+++|++++|+ .+|+ .|++|+++++|+++++..++..+++|+++ +|.+||||.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 5899999999983 4578899999999999998 5777 59999999999999999999999999985 999999999
Q ss_pred CchhHHHHHHhhccCCccEEeeecCCCCCCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHH
Q 002301 105 DAVTSHVVSHVANELQVPLLSFSATDPTLSSL-QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 105 ~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~-~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (940)
+|..+.+++++++.+++|+|++.++++.+++. .+||+||+.|++..++.+++.++++++| +|++|+.|++||+...+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 99999999999999999999988888888874 5899999999999999999988899998 799999999999999999
Q ss_pred HHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCC-----CeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCc
Q 002301 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-----SRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSW 258 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~ 258 (940)
+++.+++.|++|+....++ .+..|++.++++|++.+ +|+|++.+..... .+.++.++++...++.++..+.
T Consensus 161 ~~~~~~~~G~~vv~~~~~~--~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~ 236 (374)
T 3n0x_A 161 FKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGGN 236 (374)
T ss_dssp HHHHHTTTTCEEEEEEEEC--TTCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECCC
T ss_pred HHHHHHHcCCEEeeeecCC--CCCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeeccc
Confidence 9999999999999988887 45678999999999988 9999987544322 3455666666555666554332
Q ss_pred cccccCCCCCCCCccccccceeEEEEEe---cCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHH
Q 002301 259 LSTALDTNSPFPSDVMDDIQGVLTLRTY---TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINS 335 (940)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~ 335 (940)
..... .......|+.+...+ .++.+..++|.++|+++++ ..++.++..+|||++++++|+++
T Consensus 237 ~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g-------~~p~~~a~~~Yda~~~l~~Al~~ 301 (374)
T 3n0x_A 237 ILPAL--------AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN-------APPDFFTAGGFSAAMAVVTAVQK 301 (374)
T ss_dssp CTTGG--------GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh--------hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC-------CCCChhHHHHHHHHHHHHHHHHH
Confidence 11111 111334566655543 3457889999999999886 35688999999999999999999
Q ss_pred HhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeecc
Q 002301 336 FFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGT 409 (940)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~ 409 (940)
+. . .++..|.++|++++|+|++|+++|+++++.....+.|++++..
T Consensus 302 ag---~-------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~ 347 (374)
T 3n0x_A 302 AK---S-------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVD 347 (374)
T ss_dssp HT---S-------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECC
T ss_pred hC---C-------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeC
Confidence 61 1 1589999999999999999999999643334567889888753
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=2.3e-35 Score=329.38 Aligned_cols=339 Identities=14% Similarity=0.126 Sum_probs=287.2
Q ss_pred CceEEEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEcCC
Q 002301 29 PSVVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQ 104 (940)
Q Consensus 29 ~~~i~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 104 (940)
.++|+||+++|++ +..|.....|+++|++++|+++|++ |+++++++.|+++++..+.+.+.+|+++ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4689999999997 3467788999999999999999995 8999999999999999999999999996 999999999
Q ss_pred CchhHHHHHH--hhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHH
Q 002301 105 DAVTSHVVSH--VANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 105 ~s~~a~~va~--~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (940)
+|..+.++++ ++...+||+|++.++++.+++ +|++||+.|++..++.++++++.++||++|++|+.+++||....+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999999888877766 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 002301 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~ 262 (940)
.+++.+++.|++++....++ .+..++...+++++..++++|++.+....+..++++++++|+..+ |+..+++...
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~~~ 234 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYP--RNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSIDPG 234 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEEC--TTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSCHH
T ss_pred HHHHHHHHcCCcEEEEEEec--CCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCChH
Confidence 99999999999998777776 456678899999999999999999988899999999999998765 6766654321
Q ss_pred cCCCCCCCCccc-cccceeEEEEE----ecCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHh
Q 002301 263 LDTNSPFPSDVM-DDIQGVLTLRT----YTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFF 337 (940)
Q Consensus 263 ~~~~~~~~~~~~-~~~~g~l~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~ 337 (940)
... .... +..+|++.... +.+..+..++|.++|+++++. ...++.++..+|||++++++|++++
T Consensus 235 ~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~p~~~a~~~yda~~~~~~al~~a- 303 (364)
T 3lop_A 235 ILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAK-----DVDLSFRAVEGFVAAKVLAEAIRRA- 303 (364)
T ss_dssp HHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCT-----TCCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCC-----CCCCChHHHHHHHHHHHHHHHHHHh-
Confidence 110 1222 45678776652 225678899999999998762 1256889999999999999999996
Q ss_pred hcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhc-cccc-cceeEEEccCCCCCCCceEEEEeeccceE
Q 002301 338 KQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTG-TAGPARFNSHGDLINPAYEIINVIGTGYR 412 (940)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~-~f~g-~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~ 412 (940)
++. .++..|.++|+++ .|+| .+|+++|+++++.......|.+++++++.
T Consensus 304 --g~~------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~ 354 (364)
T 3lop_A 304 --GPK------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLV 354 (364)
T ss_dssp --CSS------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCE
T ss_pred --CCC------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcc
Confidence 211 1589999999999 6999 99999999887655566678888766553
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=1.7e-34 Score=325.39 Aligned_cols=342 Identities=16% Similarity=0.201 Sum_probs=283.1
Q ss_pred CceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEcCC
Q 002301 29 PSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQ 104 (940)
Q Consensus 29 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 104 (940)
.++|+||+++|++. ..|.....|+++|++++| |+++++++.|+++++..+.+.+.+|+++ +|.+||||.
T Consensus 25 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 97 (386)
T 3sg0_A 25 QAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSS 97 (386)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCS
T ss_pred CCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCC
Confidence 46899999999984 357788999999999984 7899999999999999999999999998 899999999
Q ss_pred CchhHHHHHHhhccCCccEEeeecCCCCCC--CCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHH
Q 002301 105 DAVTSHVVSHVANELQVPLLSFSATDPTLS--SLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 105 ~s~~a~~va~~~~~~~vP~Is~~at~~~ls--~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (940)
++..+.++.+++...++|+|++.++++.++ ...+|++||+.|++..++.++++++.++||++|++|+.|++||+...+
T Consensus 98 ~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~ 177 (386)
T 3sg0_A 98 LTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYK 177 (386)
T ss_dssp SHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHH
Confidence 999999999999999999999988887776 356899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 002301 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~ 262 (940)
.+++.+++.|++++....++ .+..++...++++++.++++|++.+....+..++++++++|+..+ ++.++++...
T Consensus 178 ~~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~ 252 (386)
T 3sg0_A 178 VLAAAAPKLGFELTTHEVYA--RSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGVATE 252 (386)
T ss_dssp HHHHHHHHHTCEECCCEEEC--TTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGGCSH
T ss_pred HHHHHHHHcCCEEEEEEeeC--CCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccccCCH
Confidence 99999999999998766676 345678889999999999999999988899999999999998754 5655544321
Q ss_pred cCCCCCCCCccccccceeEEEEEe------cC-CC---hhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHH
Q 002301 263 LDTNSPFPSDVMDDIQGVLTLRTY------TP-DS---VLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARA 332 (940)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~l~~~~~------~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~A 332 (940)
... .......+|++....+ .| .. +..++|.++|+++++. ..++.++..+|||++++++|
T Consensus 253 ~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yda~~~~~~a 321 (386)
T 3sg0_A 253 EFI-----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG------AAPTIFGVHLWDSMTLVENA 321 (386)
T ss_dssp HHH-----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHH-----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC------CCCChhHHHHHHHHHHHHHH
Confidence 100 1123567888776542 12 22 4578999999998862 24678999999999999999
Q ss_pred HHHHhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhc-cccccceeEEEccCCCC--CCCceEEEEeecc
Q 002301 333 INSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTGTAGPARFNSHGDL--INPAYEIINVIGT 409 (940)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~-~f~g~tG~v~Fd~~G~~--~~~~~~I~~~~~~ 409 (940)
++++.+.... +.+.++..+.++|+++ +|+|++|+++|+++++. ....+.|++++++
T Consensus 322 l~~a~~~~~~---------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G 380 (386)
T 3sg0_A 322 IPAALKAAKP---------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDG 380 (386)
T ss_dssp HHHHHHHCCT---------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETT
T ss_pred HHHhhhccCC---------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECC
Confidence 9998654310 0112478999999999 79999999999876443 3456889999998
Q ss_pred ceEEE
Q 002301 410 GYRRI 414 (940)
Q Consensus 410 ~~~~V 414 (940)
.++.+
T Consensus 381 ~~~~~ 385 (386)
T 3sg0_A 381 AFRLK 385 (386)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88754
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=3.3e-32 Score=306.16 Aligned_cols=346 Identities=13% Similarity=0.064 Sum_probs=281.9
Q ss_pred CceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh-cCcEEEEcCC
Q 002301 29 PSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME-GQTVAIIGPQ 104 (940)
Q Consensus 29 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp~ 104 (940)
+++++||+++|++. ..+.....|+++|++++|+++|++ |+++++++.|+++++..+.+.+.+|++ ++|.+||||.
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 83 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCY 83 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCC
Confidence 45899999999974 357788999999999999999996 899999999999999999999999997 7999999999
Q ss_pred CchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHH
Q 002301 105 DAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAAL 184 (940)
Q Consensus 105 ~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 184 (940)
++..+.++.+++...++|+|++.++.. ...+|++||+.+++..++.++++++.+.+|++|++|+.++.+++...+.+
T Consensus 84 ~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 160 (385)
T 1pea_A 84 MSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVM 160 (385)
T ss_dssp SHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHH
Confidence 998888889999999999998765421 12468999999999999999999999999999999999888999999999
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccC
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALD 264 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~ 264 (940)
++.+++.|+++.....++...+..++...++++++.++++|++.+....+..++++++++|+..+.+.++..++....+.
T Consensus 161 ~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 240 (385)
T 1pea_A 161 RHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVA 240 (385)
T ss_dssp HHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHHHHT
T ss_pred HHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchHHHH
Confidence 99999999998876556532367889999999988899999998777788999999999998754455555443222111
Q ss_pred CCCCCCCccccccceeEEEEEecC--CChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCC
Q 002301 265 TNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGN 342 (940)
Q Consensus 265 ~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 342 (940)
. ...+..+|+++..++.+ +.+..++|.++|+++++. ...++.++..+|||++++++|++++. .
T Consensus 241 ~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~-----~~~~~~~~~~~yda~~~~~~Al~~ag----~ 305 (385)
T 1pea_A 241 K------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE-----NATITAWAEAAYWQTLLLGRAAQAAG----N 305 (385)
T ss_dssp T------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCT-----TCCCCHHHHHHHHHHHHHHHHHHHHT----S
T ss_pred h------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCC-----CCCCChHHHHHHHHHHHHHHHHHHhC----C
Confidence 1 11135788888776653 467889999999988752 12457789999999999999999961 1
Q ss_pred cccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEe-eccceEEEEEe
Q 002301 343 LSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINV-IGTGYRRIGYW 417 (940)
Q Consensus 343 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~-~~~~~~~VG~w 417 (940)
.++..|.++|++++|+|++|+++||++++.....+.|.++ +++.++.|...
T Consensus 306 ------------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 306 ------------------------WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ------------------------CCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred ------------------------CCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 1489999999999999999999999855444567789999 67888887554
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=1.1e-32 Score=307.64 Aligned_cols=341 Identities=15% Similarity=0.150 Sum_probs=280.4
Q ss_pred CCceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEcC
Q 002301 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGP 103 (940)
Q Consensus 28 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 103 (940)
..++|+||+++|++. ..|.....|+++|++++| |+++++++.|+++++..+...+.+|+++ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 456899999999984 357778899999999983 7899999999999999999999999998 89999999
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHH
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (940)
.++..+.++.+++...++|+|++.++ + +....+|++||+.+++..++.++++++.++||++|++|+.++++|+...+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998776 4 334568999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCcccccc
Q 002301 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTAL 263 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~ 263 (940)
+++.+++.|++++....++ .+..++...++++++.++++|++.+....+..++++++++|+..+ ++...++....
T Consensus 155 ~~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~~~ 229 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFA--RPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAASMD 229 (362)
T ss_dssp HHHHHHHTTCEEEEEEEEC--TTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCSHH
T ss_pred HHHHHHHcCCEEEEEeecC--CCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCcHH
Confidence 9999999999998777776 345677888999988899999998878889999999999999765 45554443211
Q ss_pred CCCCCCCCccccccceeEEEEEe----------cCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHH
Q 002301 264 DTNSPFPSDVMDDIQGVLTLRTY----------TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAI 333 (940)
Q Consensus 264 ~~~~~~~~~~~~~~~g~l~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al 333 (940)
.. .......+|++....+ .|..+..++|.++|+++++. ..++.++..+|||++++++|+
T Consensus 230 ~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yda~~~~~~al 298 (362)
T 3snr_A 230 FI-----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP------SSRSQFAGHSYDAFKVLERVV 298 (362)
T ss_dssp HH-----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT------TCCCHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC------CCCCchhHhHHHHHHHHHHHH
Confidence 00 1123467888776642 12335689999999998862 246889999999999999999
Q ss_pred HHHhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhc-cccccceeEEEccCCCC--CCCceEEEEeeccc
Q 002301 334 NSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTGTAGPARFNSHGDL--INPAYEIINVIGTG 410 (940)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~-~f~g~tG~v~Fd~~G~~--~~~~~~I~~~~~~~ 410 (940)
+++.+.... +.+.++..|.++|+++ +|+|++|+++|+++++. ....+.|+++++++
T Consensus 299 ~~a~~~~~~---------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~ 357 (362)
T 3snr_A 299 PVALKKAKP---------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGK 357 (362)
T ss_dssp HHHHHHCCT---------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTE
T ss_pred HHhhccccC---------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCE
Confidence 997544210 0112478999999999 89999999999987432 34668899999888
Q ss_pred eEEE
Q 002301 411 YRRI 414 (940)
Q Consensus 411 ~~~V 414 (940)
++.|
T Consensus 358 ~~~v 361 (362)
T 3snr_A 358 YVIV 361 (362)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8654
No 36
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.95 E-value=1.5e-27 Score=259.77 Aligned_cols=268 Identities=23% Similarity=0.425 Sum_probs=195.8
Q ss_pred CCceEEEEecCcccccceEEeC-------CCcceeeeeHHHHHHHHHhCCCccCeEEee---CCCCCC-CCCHhHHHHHH
Q 002301 466 NGRHLRIGVPNRVSFREFVSVK-------GSEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHN-NPSCTELVRLI 534 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~-------~~~~~~G~~idll~~l~~~l~~~~~~~~~~---~~~~~~-n~~~~~~~~~l 534 (940)
.+++||||+.. ++||.+.+ +++++.||++||++++++++|+++++..++ ||.... +.+|++++.+|
T Consensus 11 ~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 87 (312)
T 1yae_A 11 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 87 (312)
T ss_dssp CSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHH
T ss_pred cCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHH
Confidence 46789999985 36777644 578999999999999999999997766654 333322 57899999999
Q ss_pred HcCcccEEeeceeeecCcceeeeeccccccccEEEEEeccC-CCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhcc
Q 002301 535 TAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRK-LDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRL 613 (940)
Q Consensus 535 ~~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~-~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~ 613 (940)
.+|++|++++++++|++|.+.++||.||+..+.+++++++. ...++|.|+.||+..
T Consensus 88 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~----------------------- 144 (312)
T 1yae_A 88 IDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV----------------------- 144 (312)
T ss_dssp HTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-----------------------------------------
T ss_pred hCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC-----------------------
Confidence 99999999999999999999999999999999999999876 567899999999910
Q ss_pred CCCCCCCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhC
Q 002301 614 NDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSS 693 (940)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~ 693 (940)
|+ |++++...|++++||.
T Consensus 145 ------------------------------p~------------------------------tv~~~~~~i~~~~dL~-- 162 (312)
T 1yae_A 145 ------------------------------PR------------------------------GSERMESPIDSADDLA-- 162 (312)
T ss_dssp ----------------------------------------------------------------------CCSHHHHH--
T ss_pred ------------------------------Cc------------------------------ccccccCCCCCHHHHh--
Confidence 10 4455667899999999
Q ss_pred CC---CeEEEeCchHHHHHHhhhCCC-----------ccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC
Q 002301 694 NY---PIGYQVNSFARNYLVDELNID-----------ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR 759 (940)
Q Consensus 694 ~~---~i~~~~gs~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~ 759 (940)
++ ++|+..++....++.+. ... ..+++.+.+.++++++|.+ |+ ||++.+...+.|++++.
T Consensus 163 g~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~-Da~i~~~~~~~~~~~~~ 236 (312)
T 1yae_A 163 KQTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQRN 236 (312)
T ss_dssp TCSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHH----SS-EEEEEEHHHHHHHHTTC
T ss_pred hccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHc----CC-cEEEeccHHHHHHHhcC
Confidence 54 68877666566666431 111 1245678899999999999 89 99999999999999988
Q ss_pred CcEEEeCCccccCcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcccCCCCCCCCCccccceec
Q 002301 760 CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSACSSQGAKLDVDRLQL 828 (940)
Q Consensus 760 ~~l~~~~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~~~~c~~~~~~~~~~~l~l 828 (940)
|++.++++.+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|...... ++..+++
T Consensus 237 ~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~~~~-~~~~~~~ 304 (312)
T 1yae_A 237 CNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESK-EASALGV 304 (312)
T ss_dssp TTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC--------------
T ss_pred CCEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCCCCc-cchhhhh
Confidence 9999999888888899999999999999999999999999999999999998899876544 3333433
No 37
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.95 E-value=2.7e-27 Score=256.11 Aligned_cols=307 Identities=12% Similarity=0.082 Sum_probs=241.1
Q ss_pred EEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhH
Q 002301 33 NIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (940)
Q Consensus 33 ~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a 109 (940)
|||+++|++ +..|...+.|+++|. .|.+++++++|+.+++ +...+.++++++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 699999999 456889999999986 3789999999999997 5667788888899999999999999
Q ss_pred HHHHHhh-ccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHH
Q 002301 110 HVVSHVA-NELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTL 188 (940)
Q Consensus 110 ~~va~~~-~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (940)
.++++++ ...+||+|++.+++. .....+.|+||+.|. .+++++++++...|.+++++|+.+++||+...+.|++++
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~~--~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSPE--DEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCHH--HHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCHH--HHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999998 789999999766542 222345677776554 468999999888899999999999999999999999999
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccc--cccCCC
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLS--TALDTN 266 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~--~~~~~~ 266 (940)
++.|++|+..+.+. .. .|+..+|++++ .++|+|++.+....+..+.+++++.|...+ .+.++++. +. ..
T Consensus 147 ~~~Gg~vv~~~~y~--~~-~d~~~~l~~i~-~~pDaV~~~~~~~~~~~i~~~~~~~g~~~p---l~~~~~~~~~s~-~~- 217 (325)
T 2h4a_A 147 QQLAGTDANIRYYN--LP-ADVTYFVQENN-SNTTALYAVASPTELAEXKGYLTNIVPNLA---IYASSRASASAT-NT- 217 (325)
T ss_dssp HHHHSSCCEEEEES--ST-THHHHHHHHST-TCCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHH-HT-
T ss_pred HHcCCCcceeEecC--CH-HHHHHHHHhcC-CCCCEEEEeCCHHHHhhhhhhHhhcCCCCC---EEEeccccccCC-CC-
Confidence 99999999888887 33 69999999994 789999999988888888888777664433 56666654 21 11
Q ss_pred CCCCCccccccceeEEEE-Eec--CCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCc
Q 002301 267 SPFPSDVMDDIQGVLTLR-TYT--PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNL 343 (940)
Q Consensus 267 ~~~~~~~~~~~~g~l~~~-~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~ 343 (940)
.+.....++|++... |+. ++.+..++|.++|+..+ .+..+.+++|||+.+++++ .++.
T Consensus 218 ---~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~---------~~~rl~AlgyDA~~l~~~l-~~l~------ 278 (325)
T 2h4a_A 218 ---NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY---------QLMRLYAMGADAWLLINQF-NELR------ 278 (325)
T ss_dssp ---CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHHHHTH-HHHH------
T ss_pred ---CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc---------chHHHHHHHHHHHHHHHHH-HHHh------
Confidence 023345788987665 444 44567788887775432 2456678999999986654 3321
Q ss_pred ccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEE
Q 002301 344 SFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRI 414 (940)
Q Consensus 344 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~V 414 (940)
.+.+..|+|+||.++||++|+ ......+.+++++.++.|
T Consensus 279 -------------------------------~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 279 -------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp -------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEEC
T ss_pred -------------------------------hCCCCeeccCceeEEECCCCe-EEEeechhhccCCeEEEe
Confidence 122346999999999999997 467789999999888766
No 38
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.94 E-value=2.2e-26 Score=252.01 Aligned_cols=314 Identities=12% Similarity=0.075 Sum_probs=238.1
Q ss_pred eEEEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCch
Q 002301 31 VVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (940)
Q Consensus 31 ~i~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (940)
.+|||+++|+| +..|+..+.|+++|++ |.+++++++|+++++..++ +..+.+++|.+||||.+|+
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~ 69 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQ 69 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEccccc
Confidence 36899999998 4568888999999963 5678899999999997664 4456667999999999998
Q ss_pred hHHHHHHhhc-cCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHH
Q 002301 108 TSHVVSHVAN-ELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGD 186 (940)
Q Consensus 108 ~a~~va~~~~-~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 186 (940)
.+.+++.... ...+|+++.++++.. ...|++||+.+++..++.++++++...|++++++|+.|++||+...+.|++
T Consensus 70 ~~~a~~~~~~~~~~v~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~ 146 (327)
T 3ckm_A 70 NLDVILADPAQIQGMDVLALNATPNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNV 146 (327)
T ss_dssp HHHHHHHCGGGGTTCEEEESCCCTTC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHH
T ss_pred cchhhHHHHHhccCceEeccCcCccc---ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHH
Confidence 8877666554 556666654433322 235899999999999999999999999999999999999999999999999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCC
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTN 266 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 266 (940)
.+++.|++|+....++. .+. ...+.+++..++|+|++...+.++..+.++++++|+..+ ++.++.+.......
T Consensus 147 ~~~~~Gg~vv~~~~~~~--~~~--~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~~---~~~~~~~~~~~~~~ 219 (327)
T 3ckm_A 147 RWQQLAGTDANIRYYNL--PAD--VTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA---IYASSRASASATNT 219 (327)
T ss_dssp HHHHHHSSCCEEEEESS--TTH--HHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHT
T ss_pred HHHHCCCeEEEEEECCC--Cch--hhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccCC---EEeeeccccccchh
Confidence 99999999999888873 333 355678888999999999999999999999999887544 56655443221110
Q ss_pred CCCCCccccccceeEEEEE-e--cCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCc
Q 002301 267 SPFPSDVMDDIQGVLTLRT-Y--TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNL 343 (940)
Q Consensus 267 ~~~~~~~~~~~~g~l~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~ 343 (940)
. .......+|+..... + .++.+..+.|.++|++.++ ...+.+++|||+.+++++.+..
T Consensus 220 ~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---------~~~~~AlgyDA~~l~~~l~~~~------- 280 (327)
T 3ckm_A 220 N---TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ---------LMRLYAMGADAWLLINQFNELR------- 280 (327)
T ss_dssp C---HHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH---------HHHHHHHHHHHHHHHHTHHHHH-------
T ss_pred c---chhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC---------CCchHHHHHHHHHHHHHHHHhc-------
Confidence 0 112234567665543 3 3457788889888876653 2346778999998876554431
Q ss_pred ccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEEEEe
Q 002301 344 SFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYW 417 (940)
Q Consensus 344 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~VG~w 417 (940)
.+....|+|+||.++||+||+ ....+.+.+++++.+++|..-
T Consensus 281 -------------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv~d~ 322 (327)
T 3ckm_A 281 -------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPVVDH 322 (327)
T ss_dssp -------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEECC--
T ss_pred -------------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEcccc
Confidence 112236999999999999997 467788999999999988643
No 39
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.93 E-value=2.4e-25 Score=235.43 Aligned_cols=232 Identities=24% Similarity=0.413 Sum_probs=193.9
Q ss_pred CCceEEEEecCcccccceEEeCC-------CcceeeeeHHHHHHHHHhCCCccCeEEeeCCC---CC-CCCCHhHHHHHH
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKG-------SEMTSGFCIDVFTAAINLLPYAVPYKLIPFGD---GH-NNPSCTELVRLI 534 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~-------~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~---~~-~n~~~~~~~~~l 534 (940)
.+++|||++... +||.+.+. ++++.||++||++++++++|++++++.++.+. .. .+.+|++++.+|
T Consensus 2 ~~~~l~v~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l 78 (259)
T 3g3k_A 2 SNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp -CCCEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CCcEEEEEEecC---CCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHH
Confidence 357899999854 67776332 58999999999999999999997777765322 11 156899999999
Q ss_pred HcCcccEEeeceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccC
Q 002301 535 TAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLN 614 (940)
Q Consensus 535 ~~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~ 614 (940)
.+|++|++++++++|++|.+.++||.||...+.+++++++.
T Consensus 79 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~--------------------------------------- 119 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT--------------------------------------- 119 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS---------------------------------------
T ss_pred hcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc---------------------------------------
Confidence 99999999999999999999999999999999999998754
Q ss_pred CCCCCCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCC
Q 002301 615 DEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSN 694 (940)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~ 694 (940)
+|++++||. +
T Consensus 120 --------------------------------------------------------------------~i~~~~dL~--g 129 (259)
T 3g3k_A 120 --------------------------------------------------------------------PIDSADDLA--K 129 (259)
T ss_dssp --------------------------------------------------------------------SCCSHHHHH--T
T ss_pred --------------------------------------------------------------------cccCHHHhc--c
Confidence 588999998 5
Q ss_pred CC---eEEEeCchHHHHHHhhhCCC-----------ccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC
Q 002301 695 YP---IGYQVNSFARNYLVDELNID-----------ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC 760 (940)
Q Consensus 695 ~~---i~~~~gs~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 760 (940)
++ +|+..++....++.+. ... ...++.+++.++++++|.+ |+ ||++.+...+.|+.++.|
T Consensus 130 ~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~-da~i~~~~~~~~~~~~~~ 203 (259)
T 3g3k_A 130 QTKIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQRNC 203 (259)
T ss_dssp CSSSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHH----SS-EEEEEEHHHHHHHHHHCT
T ss_pred CCCceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHh----CC-eEEEechHHHHHHhcCCc
Confidence 54 8888887777777432 111 1134567899999999999 78 999999999999999999
Q ss_pred cEEEeCCccccCcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcccCCCC
Q 002301 761 EFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSACS 815 (940)
Q Consensus 761 ~l~~~~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~~~~c~ 815 (940)
++.+++..+...+++++++|++||.+.||++|.+|.++|.+++|.+|||....|+
T Consensus 204 ~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 204 NLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNGCP 258 (259)
T ss_dssp TEEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC--CC
T ss_pred eEEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCCCCC
Confidence 9999999888889999999999999999999999999999999999999977786
No 40
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.92 E-value=1.6e-25 Score=240.73 Aligned_cols=236 Identities=22% Similarity=0.375 Sum_probs=189.9
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCC---CCC-C----CCCHhHHHHHHHcCcc
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG---DGH-N----NPSCTELVRLITAGVY 539 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~---~~~-~----n~~~~~~~~~l~~g~~ 539 (940)
+.++||+.. .|+||.+.+.++++.||++||++++++++|+++++..++.+ ... . +++|++++++|.+|++
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~ 118 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQA 118 (292)
T ss_dssp CEEEEEEC----------CEEEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSC
T ss_pred ceeecccCC--CCCCccccccccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCc
Confidence 567888764 67787765567899999999999999999999666554322 111 1 2479999999999999
Q ss_pred cEEeeceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCC
Q 002301 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRG 619 (940)
Q Consensus 540 Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 619 (940)
|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 119 D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~-------------------------------------------- 154 (292)
T 1pb7_A 119 DMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT-------------------------------------------- 154 (292)
T ss_dssp SEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC--------------------------------------------
T ss_pred CEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc--------------------------------------------
Confidence 999999999999999999999999999999998653
Q ss_pred CCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCC---CC
Q 002301 620 PPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSN---YP 696 (940)
Q Consensus 620 ~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~---~~ 696 (940)
++++++||...+ ..
T Consensus 155 ---------------------------------------------------------------~i~~~~dl~~~g~~~~~ 171 (292)
T 1pb7_A 155 ---------------------------------------------------------------RITGINDPRLRNPSDKF 171 (292)
T ss_dssp ---------------------------------------------------------------CCCSTTCHHHHSCBTTB
T ss_pred ---------------------------------------------------------------CCCCCcCccccCcccce
Confidence 456677776333 23
Q ss_pred -eEEEeCchHHHHHHhhhCC----CccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCcccc
Q 002301 697 -IGYQVNSFARNYLVDELNI----DESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTK 771 (940)
Q Consensus 697 -i~~~~gs~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 771 (940)
+|+..|+....++.+.... +..+++.+.+.++++++|.+ |++||++.+...++|+++++|++.+++..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~ 247 (292)
T 1pb7_A 172 IYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD----NKLHAFIWDSAVLEFEASQKCDLVTTGELFFR 247 (292)
T ss_dssp CEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECSSCSEE
T ss_pred EEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHc----CCceEEEEcHHHHHHHHhcCCCEEEcCccccC
Confidence 5778888777777542111 12346678899999999999 89999999999999999999999999988888
Q ss_pred CcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcccCCCCC
Q 002301 772 NGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSACSS 816 (940)
Q Consensus 772 ~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~~~~c~~ 816 (940)
.+++++++|++||++.||++|.++.++|.+++|.+||+....|..
T Consensus 248 ~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 248 SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292 (292)
T ss_dssp EEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCCCCCC
Confidence 899999999999999999999999999999999999999888863
No 41
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.92 E-value=6.7e-26 Score=242.92 Aligned_cols=238 Identities=21% Similarity=0.409 Sum_probs=189.5
Q ss_pred cCCCceEEEEecCcccccceEEeC----CCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCC----CCCCHhHHHHHHH
Q 002301 464 PNNGRHLRIGVPNRVSFREFVSVK----GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGH----NNPSCTELVRLIT 535 (940)
Q Consensus 464 ~~~g~~l~v~v~~~~~~~~~~~~~----~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~----~n~~~~~~~~~l~ 535 (940)
|.+|++|||||+..++|++|.... +.+++.||++||++++++++|+++++..++ +++ .+++|++++.+|.
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~--~~~~g~~~~~~~~~~~~~l~ 102 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVT--NGKHGKKVNNVWNGMIGEVV 102 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECC--SSSSCCEETTEECHHHHHHH
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEcc--CCccCcccCCCHHHHHHHHh
Confidence 568999999999887777775421 134789999999999999999985555443 321 3568999999999
Q ss_pred cCcccEEeeceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCC
Q 002301 536 AGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLND 615 (940)
Q Consensus 536 ~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 615 (940)
+|++|++++++++|++|.+.++||.||+.++.+++++++.
T Consensus 103 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 142 (284)
T 2a5s_A 103 YQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT---------------------------------------- 142 (284)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc----------------------------------------
Confidence 9999999999999999999999999999999999998764
Q ss_pred CCCCCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhh---
Q 002301 616 EFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRS--- 692 (940)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~--- 692 (940)
++++++||..
T Consensus 143 -------------------------------------------------------------------~~~~~~dl~~~~~ 155 (284)
T 2a5s_A 143 -------------------------------------------------------------------QVTGLSDKKFQRP 155 (284)
T ss_dssp -------------------------------------------------------------------CCCSTTSHHHHSG
T ss_pred -------------------------------------------------------------------ccccccccccCCh
Confidence 2333444432
Q ss_pred ----CCCCeEEEeCchHHHHHHhhhCCCccCcccC--CCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC--CcEEE
Q 002301 693 ----SNYPIGYQVNSFARNYLVDELNIDESRLVPL--NSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSI 764 (940)
Q Consensus 693 ----~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~--~~l~~ 764 (940)
.+.++|+..++.....+.+.......+++.+ .+.++++++|.+ |++||++.+...+.|++++. |++.+
T Consensus 156 ~~l~~~~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~----G~vDa~i~d~~~~~~~~~~~~~~~l~~ 231 (284)
T 2a5s_A 156 HDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKT----GKLDAFIYDAAVLNYKAGRDEGCKLVT 231 (284)
T ss_dssp GGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTCTTSCEEE
T ss_pred hHcCCCceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHc----CCeeEEEEchHHHHHHHhcCCCCCEEE
Confidence 2568997765445555543211101135555 789999999999 89999999999999998875 78888
Q ss_pred eC--CccccCcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcccCCCC
Q 002301 765 VG--QVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSACS 815 (940)
Q Consensus 765 ~~--~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~~~~c~ 815 (940)
++ ..+...+++++++|+++|++.||++|.++.++|.+++|.+||+. ..|.
T Consensus 232 ~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~-~~c~ 283 (284)
T 2a5s_A 232 IGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT-GICH 283 (284)
T ss_dssp EECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC-CCCC
T ss_pred eCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhh-ccCC
Confidence 84 56777889999999999999999999999999999999999998 4775
No 42
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.91 E-value=1.4e-24 Score=233.98 Aligned_cols=215 Identities=26% Similarity=0.465 Sum_probs=179.4
Q ss_pred ceeeeeHHHHHHHHHhCCCccCeEEeeCCCCC----CCCCHhHHHHHHHcCcccEEeeceeeecCcceeeeecccccccc
Q 002301 491 MTSGFCIDVFTAAINLLPYAVPYKLIPFGDGH----NNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESG 566 (940)
Q Consensus 491 ~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~----~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~ 566 (940)
++.||++||++++++++|+++++..++ +++ .+++|++++++|.+|++|++++++++|++|.+.++||.||+..+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~--~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~ 144 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVG--DGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS 144 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECT--TCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECC--CCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc
Confidence 589999999999999999986655443 221 35679999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccccccccc
Q 002301 567 LVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVS 646 (940)
Q Consensus 567 ~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s 646 (940)
.+++++++.
T Consensus 145 ~~i~~~~~~----------------------------------------------------------------------- 153 (294)
T 2rc8_A 145 LGILVRTRG----------------------------------------------------------------------- 153 (294)
T ss_dssp EEEEEETTS-----------------------------------------------------------------------
T ss_pred eEEEEECCC-----------------------------------------------------------------------
Confidence 999998775
Q ss_pred cchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhh----hCCCCeEEEeCchHHHHHHhhhCCCc--cCc
Q 002301 647 ALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLR----SSNYPIGYQVNSFARNYLVDELNIDE--SRL 720 (940)
Q Consensus 647 ~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~----~~~~~i~~~~gs~~~~~l~~~~~~~~--~~~ 720 (940)
..|++++||. ..++++|+..|+....++.+...... .+.
T Consensus 154 -----------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~ 198 (294)
T 2rc8_A 154 -----------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRR 198 (294)
T ss_dssp -----------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGG
T ss_pred -----------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHH
Confidence 4677888887 24788999999998888865321110 122
Q ss_pred ccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhc--CCcEEEeCCccccCcceeecCCCCcchHHHHHHHHhcccc
Q 002301 721 VPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST--RCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSEN 798 (940)
Q Consensus 721 ~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~ 798 (940)
+.+.+.++.+++|.++ +|++||++.+...++|++++ .|++.++++.+...+++++++|+++|++.||++|.+|.++
T Consensus 199 ~~~~~~~~~~~~l~~~--~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~ 276 (294)
T 2rc8_A 199 YNVPATPDGVQYLKND--PEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSH 276 (294)
T ss_dssp GCBSSHHHHHHHHHSS--SCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHhc--cCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3578999999999873 25899999999999999876 4789999988888899999999999999999999999999
Q ss_pred cchHHHHHhhcccCCCC
Q 002301 799 GDLQRIHDKWLLRSACS 815 (940)
Q Consensus 799 G~~~~i~~kw~~~~~c~ 815 (940)
|.+++|.+||+....|.
T Consensus 277 G~~~~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 277 GFMDVLHDKWYKVVPCG 293 (294)
T ss_dssp THHHHHHHHHCCC----
T ss_pred CCHHHHHHhhcCCCCCC
Confidence 99999999999988886
No 43
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.91 E-value=2.6e-24 Score=225.00 Aligned_cols=219 Identities=20% Similarity=0.270 Sum_probs=190.5
Q ss_pred ceEEEEecCcccccceEE---eCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 468 RHLRIGVPNRVSFREFVS---VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~---~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
.+|+||+. ++|+||.+ .+++|++.||++||++++++++|+++++... .|++++.+|.+|++|++++
T Consensus 12 g~L~Vg~~--~~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~~---------~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVATS--PDYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLEILSM---------SFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEEC--CCBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEEC--CCCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCceEEecc---------cHHHHHHHHHcCCCCcccc
Confidence 47999986 37889877 3678999999999999999999998666554 3999999999999999999
Q ss_pred ceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCC
Q 002301 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (940)
Q Consensus 545 ~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (940)
++++|++|.+.++||.||+..+.++++++..
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~------------------------------------------------- 111 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKAD------------------------------------------------- 111 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGG-------------------------------------------------
T ss_pred cccCChhHccEEEccCccccCcccccccccc-------------------------------------------------
Confidence 9999999999999999999999999998765
Q ss_pred ceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCch
Q 002301 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (940)
Q Consensus 625 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~ 704 (940)
...+++++||. +++||+..|+.
T Consensus 112 --------------------------------------------------------~~~~~~~~dl~--g~~i~v~~g~~ 133 (243)
T 4h5g_A 112 --------------------------------------------------------VEKYKDLTSLE--SANIAAQKGTV 133 (243)
T ss_dssp --------------------------------------------------------TTTCCSHHHHH--TSEEEEETTSH
T ss_pred --------------------------------------------------------cccccccccCC--CCEEEecCCcH
Confidence 15788999998 89999999999
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEe---CCccccCcceeecCCC
Q 002301 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIV---GQVFTKNGWGFAFPRD 781 (940)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~k~ 781 (940)
...++.+. .+..+++.+++.++++++|.+ |++|+++.+...+.+++.++.++... .......+++++++|+
T Consensus 134 ~~~~l~~~--~~~~~i~~~~~~~~~~~~l~~----GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~ 207 (243)
T 4h5g_A 134 PESMVKEQ--LPKAQLTSLTNMGEAVNELQA----GKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKN 207 (243)
T ss_dssp HHHHHHHH--CTTSEEEEESCHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESS
T ss_pred HHHHHHHh--cccceeEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCC
Confidence 88888653 345678899999999999999 99999999999998888876654433 2344456789999999
Q ss_pred Cc-chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 782 SP-LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 782 sp-l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+| |++.||++|.+|+++|.+++|.+||+.
T Consensus 208 ~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 208 SDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 98 999999999999999999999999987
No 44
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.91 E-value=3.6e-24 Score=223.91 Aligned_cols=222 Identities=16% Similarity=0.212 Sum_probs=186.1
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhC-CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l-~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
..++|+||+.. +|+||.+.+.+|++.||++||+++++++| |++++++..+ |++++..|.+|++|++++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~~G~~~G~~vdl~~~ia~~l~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~ 75 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMD---------FSNLLVSLGAGKVDIVAH 75 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHTCTTEEEEEEECC---------GGGHHHHHHTTSCSEECS
T ss_pred cCCeEEEEECC--CCCCeEEECCCCcEEEhHHHHHHHHHHhccCCeEEEEECC---------HHHHHHHHHCCCCCEecc
Confidence 35789999863 79999987788999999999999999998 8886665543 999999999999999999
Q ss_pred ceeeecCcceeeeeccccccccEEEEE-eccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcC
Q 002301 545 DIAIITNRTKMADFTQPYIESGLVVVA-PVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 623 (940)
Q Consensus 545 ~~~~t~~R~~~v~ft~p~~~~~~~~vv-~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (940)
++++|++|.+.++||.||+.....+++ +...
T Consensus 76 ~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 107 (243)
T 4gvo_A 76 QMEKSKEREKKFLFNDVAYNNFPLQLTVLDSN------------------------------------------------ 107 (243)
T ss_dssp CCBCCHHHHHHSEECSSCCEECCEEEEEETTC------------------------------------------------
T ss_pred cCCCCHHHhhhhhhhhhhcccccceEEEeccc------------------------------------------------
Confidence 999999999999999997766555444 4433
Q ss_pred CceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCc
Q 002301 624 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 703 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs 703 (940)
..+++++||. |++||+..|+
T Consensus 108 ----------------------------------------------------------~~~~~~~dL~--g~~v~v~~gs 127 (243)
T 4gvo_A 108 ----------------------------------------------------------NSINSTKDLA--GKRVITSATS 127 (243)
T ss_dssp ----------------------------------------------------------CSCSSGGGGT--TCEEEECTTC
T ss_pred ----------------------------------------------------------cccCchHHhc--CCeEEEecCc
Confidence 6789999998 8999999998
Q ss_pred hHHHHHHhh---hCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC-cEEEeCCccccCcceeecC
Q 002301 704 FARNYLVDE---LNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC-EFSIVGQVFTKNGWGFAFP 779 (940)
Q Consensus 704 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~ 779 (940)
....++.+. ..........+.+.++.+++|.+ |++||++.+...+.|+.++.. ++.++++.+...+++++++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (243)
T 4gvo_A 128 NGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKT----GRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLG 203 (243)
T ss_dssp HHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHH----TSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEEC
T ss_pred hHHHHHHHHHHhccccceeccccCChHHHHHHHHc----CCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEe
Confidence 776666432 11111223456788899999999 899999999999998887754 6788888888889999999
Q ss_pred CCCc-chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 780 RDSP-LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 780 k~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
|++| |++.||++|.+|.++|.+++|.+|||+
T Consensus 204 k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g 235 (243)
T 4gvo_A 204 KDETKLSKKVDEALQSIIDDGTLKKLSEKWLG 235 (243)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCC
Confidence 9998 999999999999999999999999997
No 45
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.90 E-value=3.1e-23 Score=215.95 Aligned_cols=219 Identities=18% Similarity=0.272 Sum_probs=194.4
Q ss_pred ceEEEEecCcccccceEEe-CCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 468 RHLRIGVPNRVSFREFVSV-KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~-~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
++|+||+.. +|+||.+. +.+|++.|+++|+++++++++|+++++...+ |.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~~ 71 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGNNSSLYGFDIDLMQEICRRLHATCTFEAYI---------FDDLFPALKNREVDLVIASM 71 (237)
T ss_dssp CEEEEEEES--EETTTEECCCTTSCCBSHHHHHHHHHHHHTTCEEEEEEEC---------GGGHHHHHHTTSSSEECSSC
T ss_pred ceEEEEECC--CCCCeEEEeCCCCCEeeehHHHHHHHHHHhCCceEEEEcC---------HHHHHHHHhCCCCCEEEEcc
Confidence 579999983 68999997 7889999999999999999999997776654 99999999999999999999
Q ss_pred eeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCce
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (940)
+.+++|.+.++||.||.....++++++..
T Consensus 72 ~~~~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 100 (237)
T 3kzg_A 72 IITDERKKHFIFSLPYMESNSQYITTVDS--------------------------------------------------- 100 (237)
T ss_dssp BCCTTGGGTCEECCCSBCCEEEEEEETTC---------------------------------------------------
T ss_pred ccChhHhccceeeeeeeecceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999998765
Q ss_pred eehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHH
Q 002301 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (940)
Q Consensus 627 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~ 706 (940)
++++++||. |++||+..|+...
T Consensus 101 --------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~~ 122 (237)
T 3kzg_A 101 --------------------------------------------------------KISTFDDLH--GKKIGVRKGTPYA 122 (237)
T ss_dssp --------------------------------------------------------SCCSGGGGT--TCEEEEETTSTHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEecCCHHH
Confidence 388999998 8899999999877
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--------cEEEeCCcc-ccCcceee
Q 002301 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--------EFSIVGQVF-TKNGWGFA 777 (940)
Q Consensus 707 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--------~l~~~~~~~-~~~~~~~~ 777 (940)
.++.+. .+..+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. ++.+++..+ ...+++++
T Consensus 123 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 196 (237)
T 3kzg_A 123 RQVLSE--NRNNQVIFYELIQDMLLGLSN----NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIM 196 (237)
T ss_dssp HHHHHT--CSSCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCE
T ss_pred HHHHHh--CCCCcEEEeCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEE
Confidence 777553 333577888999999999999 999999999999999998865 788888877 78889999
Q ss_pred cCCCCc-chHHHHHHHHhcccccchHHHHHhhcccC
Q 002301 778 FPRDSP-LAVDISTAILKLSENGDLQRIHDKWLLRS 812 (940)
Q Consensus 778 ~~k~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~~~ 812 (940)
++|++| +.+.+|++|.++.++|.+++|.+||+..+
T Consensus 197 ~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~ 232 (237)
T 3kzg_A 197 ANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGH 232 (237)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC---
T ss_pred EcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCcc
Confidence 999987 99999999999999999999999999843
No 46
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.90 E-value=4.5e-23 Score=218.44 Aligned_cols=230 Identities=20% Similarity=0.408 Sum_probs=189.0
Q ss_pred CceEEEEecCcccccceEEeCC-------CcceeeeeHHHHHHHHHhCCCccCeEEee---CCCCCCCC-CHhHHHHHHH
Q 002301 467 GRHLRIGVPNRVSFREFVSVKG-------SEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNP-SCTELVRLIT 535 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~-------~~~~~G~~idll~~l~~~l~~~~~~~~~~---~~~~~~n~-~~~~~~~~l~ 535 (940)
+++|+|++. +|+||.+.+. ++++.||++||++++++++|+++++...+ ||....++ +|++++.+|.
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 578999998 5688887544 48999999999999999999997666653 34333444 7999999999
Q ss_pred cCcccEEeeceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCC
Q 002301 536 AGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLND 615 (940)
Q Consensus 536 ~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 615 (940)
+|++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999988999999999999999999999999998653
Q ss_pred CCCCCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCC
Q 002301 616 EFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNY 695 (940)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~ 695 (940)
++++++||. ++
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (263)
T 1mqi_A 120 -------------------------------------------------------------------PIESAEDLS--KQ 130 (263)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------ccCCHHHHh--cc
Confidence 578899998 66
Q ss_pred C---eEEE-eCchHHHHHHhhhCC-----------CccCcccCCCHHHHHHHh--hcCCCCCceEEEEechhhHHHHHhc
Q 002301 696 P---IGYQ-VNSFARNYLVDELNI-----------DESRLVPLNSPEEYAKAL--KDGPHKGGVAAVVDDRAYAELFLST 758 (940)
Q Consensus 696 ~---i~~~-~gs~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~l--~~~~~~g~~~a~~~~~~~~~~~~~~ 758 (940)
+ +|.. .|+. ..++.+. .. ...+++.+.+.++++++| .+ |+ ++++.+...+.|+.++
T Consensus 131 ~~~~ig~v~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----g~-da~~~~~~~~~~~~~~ 203 (263)
T 1mqi_A 131 TEIAYGTLDSGST-KEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK----GK-YAYLLESTMNEYIEQR 203 (263)
T ss_dssp SSSEEECBSSSHH-HHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTT----TS-EEEEEEHHHHHHHTTS
T ss_pred cCeeEEEEeccHH-HHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcC----Cc-EEEEechHHHHHHHhc
Confidence 6 5644 4554 4444321 11 112467788999999999 77 77 8999999999988877
Q ss_pred C-CcEEEeCCccccCcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcc-cCCCC
Q 002301 759 R-CEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLL-RSACS 815 (940)
Q Consensus 759 ~-~~l~~~~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~-~~~c~ 815 (940)
. |++.+++..+...+++++++|+++|.+.+|++|.+|.++|.+++|.+||+. ...|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 204 KPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp TTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred CCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 5 578888888888889999999999999999999999999999999999998 77786
No 47
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.90 E-value=4.2e-23 Score=218.88 Aligned_cols=234 Identities=24% Similarity=0.389 Sum_probs=183.6
Q ss_pred CCceEEEEecCcccccceEEeCCC-----cceeeeeHHHHHHHHHhCCCccCeEEee---CCCCCCCCCHhHHHHHHHcC
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGS-----EMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNPSCTELVRLITAG 537 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~-----~~~~G~~idll~~l~~~l~~~~~~~~~~---~~~~~~n~~~~~~~~~l~~g 537 (940)
+|++|||++... +||.+.+.+ +++.||++||++++++++|+++++..++ ||....+.+|++++.+|.+|
T Consensus 1 ~~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 478999999853 677774333 7899999999999999999996666543 33333457899999999999
Q ss_pred cccEEeeceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCC
Q 002301 538 VYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEF 617 (940)
Q Consensus 538 ~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 617 (940)
++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999998653
Q ss_pred CCCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhC-CCC
Q 002301 618 RGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSS-NYP 696 (940)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~-~~~ 696 (940)
+|++++||... +..
T Consensus 116 -----------------------------------------------------------------~i~~~~dL~~~v~v~ 130 (265)
T 2v3u_A 116 -----------------------------------------------------------------SIQSLQDLSKQTDIP 130 (265)
T ss_dssp -----------------------------------------------------------------CCCSHHHHHTCSSSC
T ss_pred -----------------------------------------------------------------CccchhhhhhhhcEE
Confidence 58889999811 112
Q ss_pred eEEEeCchHHHHHHhhhCCCc------------------cCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhc
Q 002301 697 IGYQVNSFARNYLVDELNIDE------------------SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST 758 (940)
Q Consensus 697 i~~~~gs~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~ 758 (940)
.|...++....++.+. +... .+++.+.+.++.+++|.+ |++ +++.+...+.|++++
T Consensus 131 ~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----G~~-a~~~~~~~~~~~~~~ 204 (265)
T 2v3u_A 131 YGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKY----GNY-AFVWDAAVLEYVAIN 204 (265)
T ss_dssp EECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHH----SSC-EEEEEHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHc----CCE-EEEEcchHHHHHHhc
Confidence 3444445555666432 1111 123467899999999999 889 888999888888765
Q ss_pred --CCcEEEeCCccccCcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcc-cCCCC
Q 002301 759 --RCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLL-RSACS 815 (940)
Q Consensus 759 --~~~l~~~~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~-~~~c~ 815 (940)
.|++.+++..+...+++++++|++||.+.||++|.+|.++|.+++|.+||+. ...|+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 205 DPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp CTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred CCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 4679999888888889999999999999999999999999999999999998 66775
No 48
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.89 E-value=2.9e-23 Score=215.38 Aligned_cols=219 Identities=21% Similarity=0.346 Sum_probs=189.1
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
.++|||++. +.|+||.+.+.+|++.||++||++++++++|+++++... +|.+++.++.+|++|++++++
T Consensus 4 a~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 72 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKN---------DWDSIIPNLVSGNYDTIIAGM 72 (232)
T ss_dssp --CEEEEEC--SEETTTEEECTTSCEESHHHHHHHHHHHHHTCCEEEEEC---------CGGGHHHHHHTTSCSEECSSC
T ss_pred CCEEEEEEC--CCCCCeeEECCCCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCCCEEEeCC
Confidence 468999987 378999987778999999999999999999999666554 399999999999999999999
Q ss_pred eeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCce
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (940)
+.|++|.+.++||.||...+.++++++..
T Consensus 73 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 101 (232)
T 3i6v_A 73 SITDERDEVIDFTQNYIPPTASSYVATSD--------------------------------------------------- 101 (232)
T ss_dssp BCCHHHHTTSEEEEEEECCCEEEEEESST---------------------------------------------------
T ss_pred cCCHHHHhhcCcccccccCCeEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999987542
Q ss_pred eehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHH
Q 002301 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (940)
Q Consensus 627 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~ 706 (940)
++||. | +||+..|+...
T Consensus 102 ------------------------------------------------------------~~dL~--g-~igv~~g~~~~ 118 (232)
T 3i6v_A 102 ------------------------------------------------------------GADLS--G-IVAAQTATIQA 118 (232)
T ss_dssp ------------------------------------------------------------TCCTT--S-EEEEETTSHHH
T ss_pred ------------------------------------------------------------hHHhC--C-CEEEecCchHH
Confidence 45676 7 99999999998
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC-CcEEEeCC-ccccCcceeecCCCCc-
Q 002301 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSIVGQ-VFTKNGWGFAFPRDSP- 783 (940)
Q Consensus 707 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~~~~~k~sp- 783 (940)
.++.+. ..+++.+.+.++++++|.+ |++|+++.+...+.+++++. .++.+++. .+...+++++++|++|
T Consensus 119 ~~l~~~----~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 190 (232)
T 3i6v_A 119 GYIAES----GATLVEFATPEETIAAVRN----GEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGE 190 (232)
T ss_dssp HHHHHS----SSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHH
T ss_pred HHHHhc----CCeEEEeCCHHHHHHHHHc----CCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHH
Confidence 888653 3567888999999999999 99999999999999998876 67777765 4566789999999998
Q ss_pred chHHHHHHHHhcccccchHHHHHhhcccCCCCCCC
Q 002301 784 LAVDISTAILKLSENGDLQRIHDKWLLRSACSSQG 818 (940)
Q Consensus 784 l~~~~~~~il~l~e~G~~~~i~~kw~~~~~c~~~~ 818 (940)
+.+.||++|.+|.++|.+++|.+||+....|....
T Consensus 191 l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~ 225 (232)
T 3i6v_A 191 LRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEE 225 (232)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC--
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHcCCCCCcccc
Confidence 99999999999999999999999999966555443
No 49
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.89 E-value=1e-22 Score=213.75 Aligned_cols=222 Identities=21% Similarity=0.402 Sum_probs=196.2
Q ss_pred CCCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 465 NNGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 465 ~~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
....+|+|++. +.|+||.+. .++++.|+++||++++++++|+++++...+ |.+++.++.+|++|++++
T Consensus 21 ~~~~~l~v~~~--~~~~P~~~~-~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~ 88 (249)
T 4f3p_A 21 SMAKELVVGTD--TSFMPFEFK-QGDKYVGFDLDLWAEIAKGAGWTYKIQPMD---------FAGLIPALQTQNIDVALS 88 (249)
T ss_dssp ---CCEEEEEE--SCBTTTBEE-ETTEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSCSEEEE
T ss_pred ccCceEEEEeC--CCCCCeEEe-cCCeEEEEhHHHHHHHHHHcCCceEEEecC---------HHHHHHHHHCCCCCEEEe
Confidence 35678999997 368888875 678899999999999999999997776654 999999999999999998
Q ss_pred ceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCC
Q 002301 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (940)
Q Consensus 545 ~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (940)
++..+++|.+.++||.||.....++++++..
T Consensus 89 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 119 (249)
T 4f3p_A 89 GMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------- 119 (249)
T ss_dssp EEECCHHHHTTEEECSCCEEEEEEEEEETTC-------------------------------------------------
T ss_pred ccccCHHHHcCcceecceeeccEEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998765
Q ss_pred ceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCch
Q 002301 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (940)
Q Consensus 625 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~ 704 (940)
+.+++++||. |++||+..|+.
T Consensus 120 ---------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~ 140 (249)
T 4f3p_A 120 ---------------------------------------------------------TTIKSIDDLN--GKVIAAKTGTA 140 (249)
T ss_dssp ---------------------------------------------------------CSCCSSGGGT--TSEEEEETTSH
T ss_pred ---------------------------------------------------------CCcCChHHhC--CCEEEEeCCCh
Confidence 5789999998 88999999999
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeCCccccCcceeecCCCC
Q 002301 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFAFPRDS 782 (940)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~s 782 (940)
...++.+.. +..+++.+++.++.+++|.+ |++|+++.+...+.+++++.. ++.+++..+...+++++++|++
T Consensus 141 ~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~ 214 (249)
T 4f3p_A 141 TIDWIKAHL--KPKEIRQFPNIDQAYLALEA----GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGS 214 (249)
T ss_dssp HHHHHHHHC--CCSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTC
T ss_pred HHHHHHhcC--CCceEEEcCCHHHHHHHHHc----CCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCc
Confidence 888886533 44577888999999999999 999999999999999988754 5888888888888999999999
Q ss_pred cchHHHHHHHHhcccccchHHHHHhhcccC
Q 002301 783 PLAVDISTAILKLSENGDLQRIHDKWLLRS 812 (940)
Q Consensus 783 pl~~~~~~~il~l~e~G~~~~i~~kw~~~~ 812 (940)
|+.+.||++|.++.++|.+++|.+||+...
T Consensus 215 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 215 PLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp THHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 999999999999999999999999999843
No 50
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.89 E-value=1.2e-22 Score=212.54 Aligned_cols=224 Identities=13% Similarity=0.259 Sum_probs=197.9
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
..+|+||+. ++|+||.+.+.++++.|+++||++++++++|+++++...+ |.+++.++.+|++|++++++
T Consensus 4 ~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~~ 72 (245)
T 3k4u_A 4 RGELRVGLE--PGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTS---------WDGLIPGLVTEKFDIIISGM 72 (245)
T ss_dssp CSEEEEEEC--TTSTTTCEEETTTEEESHHHHHHHHHHHHHTCEEEEEECC---------GGGHHHHHHTTSCSEECSSC
T ss_pred CCeEEEEEC--CCcCCeeEECCCCCCccchHHHHHHHHHHhCCeEEEEEcc---------HHHHHHHHhCCCcCEEEecC
Confidence 467999998 4788998866788999999999999999999986665543 99999999999999998889
Q ss_pred eeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCce
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (940)
..+++|.+.+.||.||.....++++++..
T Consensus 73 ~~t~~r~~~~~~s~p~~~~~~~~~~~~~~--------------------------------------------------- 101 (245)
T 3k4u_A 73 TISQERNLRVNFVEPYIVVGQSLLVKKGL--------------------------------------------------- 101 (245)
T ss_dssp BCCHHHHTTSEECSCSEEECEEEEEETTT---------------------------------------------------
T ss_pred cCCHHHHhhcCcchhhheeceEEEEECCc---------------------------------------------------
Confidence 99999999999999999999999998774
Q ss_pred eehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHH
Q 002301 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (940)
Q Consensus 627 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~ 706 (940)
...+++++||...+++||+..|+...
T Consensus 102 ------------------------------------------------------~~~i~~~~dL~~~g~~i~v~~g~~~~ 127 (245)
T 3k4u_A 102 ------------------------------------------------------EKGVKSYKDLDKPELTLVTKFGVSAE 127 (245)
T ss_dssp ------------------------------------------------------TTTCCSGGGGCCSSCEEEEETTSHHH
T ss_pred ------------------------------------------------------ccccCCHHHhccCCcEEEEeCCcHHH
Confidence 15788999998778899999999988
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeCCccccCcceeecCCCCc-
Q 002301 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFAFPRDSP- 783 (940)
Q Consensus 707 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~sp- 783 (940)
.++.+. .+..+++.+++.++++++|.+ |++|+++.+...+.+++++.. .+..++..+...+++++++|++|
T Consensus 128 ~~l~~~--~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 201 (245)
T 3k4u_A 128 YAAKRL--FKNAKLKTYDTEAEAVQEVLN----GKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPD 201 (245)
T ss_dssp HHHHHH--CSSSEEEEESSHHHHHHHHHS----SSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHH
T ss_pred HHHHhh--CCcCCEEEeCCHHHHHHHHHc----CCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHH
Confidence 888653 334678888999999999999 999999999999998877643 68888888888899999999999
Q ss_pred chHHHHHHHHhcccccchHHHHHhhcccC
Q 002301 784 LAVDISTAILKLSENGDLQRIHDKWLLRS 812 (940)
Q Consensus 784 l~~~~~~~il~l~e~G~~~~i~~kw~~~~ 812 (940)
+.+.||++|.++.++|.+++|.+||+...
T Consensus 202 l~~~ln~~l~~l~~~g~~~~i~~k~~~~~ 230 (245)
T 3k4u_A 202 FLNWLNHFLAQIKHDGSYDELYERWFVDT 230 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHhcCcc
Confidence 99999999999999999999999999943
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.88 E-value=2.9e-22 Score=209.27 Aligned_cols=222 Identities=19% Similarity=0.276 Sum_probs=195.7
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
..+|+||+. +.|+||.+.+.++++.|+++||++++++++|+++++... +|.+++.++.+|++|++++++
T Consensus 10 ~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 78 (242)
T 3del_B 10 SEKFIVGTN--ATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREF---------SFDALILNLKQHRIDAVITGM 78 (242)
T ss_dssp -CEEEEEEC--SCBTTTBEECTTSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSSSEECSSB
T ss_pred CCcEEEEeC--CCCCCeeEECCCCCEEEeeHHHHHHHHHHcCCceEEEEc---------CHHHHHHHHhCCCcCEEEecC
Confidence 468999995 378999887778999999999999999999988665544 399999999999999999889
Q ss_pred eeecCcceeeeeccccc--cccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCC
Q 002301 547 AIITNRTKMADFTQPYI--ESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~--~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (940)
..+++|.+.++| .||+ ..+.++++++.
T Consensus 79 ~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~-------------------------------------------------- 107 (242)
T 3del_B 79 SITPSRLKEILM-IPYYGEEIKHLVLVFKG-------------------------------------------------- 107 (242)
T ss_dssp BCCHHHHTTEEE-EEEEEEEESEEEEEEES--------------------------------------------------
T ss_pred cCCHHHHhcccc-eeeeecCCceEEEEeCC--------------------------------------------------
Confidence 999999999999 9999 88899988765
Q ss_pred ceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCch
Q 002301 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (940)
Q Consensus 625 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~ 704 (940)
.++++++||. |++||+..|+.
T Consensus 108 ---------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~ 128 (242)
T 3del_B 108 ---------------------------------------------------------ENKHPLPLTQ--YRSVAVQTGTY 128 (242)
T ss_dssp ---------------------------------------------------------CCSCCCCGGG--SSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEEcCcH
Confidence 3678899998 88999999999
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCccccCc----ceeecCC
Q 002301 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNG----WGFAFPR 780 (940)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k 780 (940)
...++.+ .+..+++.+.+.++.+++|.+ |++|+++.+...+.+++++...+.+++..+...+ ++++++|
T Consensus 129 ~~~~l~~---~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 201 (242)
T 3del_B 129 QEAYLQS---LSEVHIRSFDSTLEVLMEVMH----GKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVAS 201 (242)
T ss_dssp HHHHHHH---STTCCEEEESSHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEET
T ss_pred HHHHHHh---CCCceEEEECCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeC
Confidence 8888865 445678889999999999999 9999999999999999998877888877777777 9999999
Q ss_pred CCc-chHHHHHHHHhcccccchHHHHHhhcccCCCCC
Q 002301 781 DSP-LAVDISTAILKLSENGDLQRIHDKWLLRSACSS 816 (940)
Q Consensus 781 ~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~~~~c~~ 816 (940)
++| +.+.||++|.++.++|.+++|.+||+....|+.
T Consensus 202 ~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 202 DRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSST
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCccc
Confidence 998 999999999999999999999999999555443
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.88 E-value=4.5e-22 Score=211.37 Aligned_cols=225 Identities=19% Similarity=0.334 Sum_probs=196.2
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
.++||||+.. .|+||.+.+.+|++.|+++||++++++++|+++++... +|.+++.++.+|++|++++++
T Consensus 20 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 88 (268)
T 3hv1_A 20 EKKIKIGFDA--TFVPMGYEEKDGSYIGFDIDLANAVFKLYGIDVEWQAI---------DWDMKETELKNGTIDLIWNGY 88 (268)
T ss_dssp HTEEEEEECT--EETTTEEECTTSCEECHHHHHHHHHHHTTTCEEEEEEC---------CGGGHHHHHHHTSCSEECSSC
T ss_pred CCcEEEEECC--CCCCceEECCCCCEEEehHHHHHHHHHHhCCcEEEEEC---------CHHHHHHHHHCCCCCEEEecC
Confidence 4689999974 78999987778999999999999999999998666554 399999999999999999889
Q ss_pred eeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCce
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (940)
..+++|.+.++||.||.....++++++..
T Consensus 89 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 117 (268)
T 3hv1_A 89 SVTDERKQSADFTEPYMVNEQVLVTKKSS--------------------------------------------------- 117 (268)
T ss_dssp BCCHHHHTTCEECCCCEEECEEEEEEGGG---------------------------------------------------
T ss_pred ccCHHHHhcCcCcHHHeeCceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999988653
Q ss_pred eehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHH
Q 002301 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (940)
Q Consensus 627 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~ 706 (940)
.|++++||. |++||+..|+...
T Consensus 118 --------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~ 139 (268)
T 3hv1_A 118 --------------------------------------------------------GIDSVAGMA--GKTLGAQAGSSGY 139 (268)
T ss_dssp --------------------------------------------------------CCCSSGGGT--TCCEEEETTCHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEEeCCchH
Confidence 678899997 8999999999988
Q ss_pred HHHHhhhC-----CCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC---CcEEEeCCccccCcceeec
Q 002301 707 NYLVDELN-----IDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR---CEFSIVGQVFTKNGWGFAF 778 (940)
Q Consensus 707 ~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~ 778 (940)
.++.+... .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++. +++.+++..+...++++++
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 215 (268)
T 3hv1_A 140 DAFNASPKILKDVVANQKVVQYSTFTQALIDLNS----GRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGA 215 (268)
T ss_dssp HHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEE
T ss_pred HHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc----CCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEE
Confidence 88754321 222467788999999999999 99999999999999988874 4688888878888899999
Q ss_pred CCCCc-chHHHHHHHHhcccccchHHHHHhhcccCCCC
Q 002301 779 PRDSP-LAVDISTAILKLSENGDLQRIHDKWLLRSACS 815 (940)
Q Consensus 779 ~k~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~~~~c~ 815 (940)
+|++| +.+.||++|.++.++|.+++|.+||+......
T Consensus 216 ~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~ 253 (268)
T 3hv1_A 216 RKVDKTLIKKINQGFETLYKNGEFQKISNKWFGEDVAT 253 (268)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSCCCC
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCCCCC
Confidence 99998 99999999999999999999999999944333
No 53
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.88 E-value=1.9e-22 Score=210.21 Aligned_cols=221 Identities=16% Similarity=0.232 Sum_probs=192.8
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
.++|+||+. ++|+||.+.+.+|++.|+++||++++++++|+++++... +|.+++.++.+|++|++++++
T Consensus 14 ~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 82 (239)
T 3kbr_A 14 SGVLRVATT--GDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPT---------SWPNLMRDFADDRFDIAMSGI 82 (239)
T ss_dssp HTEEEEEEC--SEETTTEEECTTSCEESHHHHHHHHHHHHTTCEEEEEEC---------CTTTHHHHHHTTCCSEECSSC
T ss_pred CCeEEEEEC--CCCCCeeEECCCCCEEeehHHHHHHHHHHHCCceEEEEe---------CHHHHHHHHHCCCcCEEEeCC
Confidence 467999996 378999987778999999999999999999998666554 399999999999999998889
Q ss_pred eeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCce
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (940)
..+++|.+.++||.||...+.++++++..
T Consensus 83 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 111 (239)
T 3kbr_A 83 SINLERQRQAYFSIPYLRDGKTPITLCSE--------------------------------------------------- 111 (239)
T ss_dssp BCCHHHHTTCEECSCSEEECEEEEEEGGG---------------------------------------------------
T ss_pred cCCHHHcCccccchHHhccCcEEEEECCc---------------------------------------------------
Confidence 99999999999999999999999998765
Q ss_pred eehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHH
Q 002301 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (940)
Q Consensus 627 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~ 706 (940)
...+++++||...+++||+..|+...
T Consensus 112 ------------------------------------------------------~~~i~~~~dL~~~g~~v~~~~g~~~~ 137 (239)
T 3kbr_A 112 ------------------------------------------------------EARFQTLEQIDQPGVTAIVNPGGTNE 137 (239)
T ss_dssp ------------------------------------------------------GGGGSSHHHHSSTTCEEEECTTSHHH
T ss_pred ------------------------------------------------------ccccCCHHHhcCCCcEEEEcCCCcHH
Confidence 14688999998667889999999988
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeC--CccccCcceeecCCCCc-
Q 002301 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG--QVFTKNGWGFAFPRDSP- 783 (940)
Q Consensus 707 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~sp- 783 (940)
.++.+. .+..+++.+++.++++++|.+ |++|+++.+...+.+++++..++.++. ..+...+++++++| .+
T Consensus 138 ~~l~~~--~~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~ 210 (239)
T 3kbr_A 138 KFARAN--LKKARILVHPDNVTIFQQIVD----GKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR-DEA 210 (239)
T ss_dssp HHHHHH--CSSSEEEECCCTTTHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS-CHH
T ss_pred HHHHHh--CCCCceEEeCCHHHHHHHHHc----CCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC-CHH
Confidence 888653 334678888999999999999 999999999999999999877776664 44667789999999 55
Q ss_pred chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 784 LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 784 l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+.+.+|++|.++.++|.+++|.+||+.
T Consensus 211 l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 211 FKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 999999999999999999999999986
No 54
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.87 E-value=7.3e-22 Score=203.73 Aligned_cols=218 Identities=22% Similarity=0.359 Sum_probs=186.7
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
++||||+.. .|+||.+.+.++++.|+++|+++++++++|++++++.. +|.+++.++.+|++|++++++.
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~~ 70 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGPSGQVEGFGADIVKAVCKQMQAVCTISNQ---------PWDSLIPSLKLGKFDALFGGMN 70 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC--CCEESHHHHHHHHHHHHTTCEEEEEEC---------CHHHHHHHHHHTSCSEECSSCB
T ss_pred ceEEEEEcC--CCCCeeEECCCCCcccchHHHHHHHHHHhCCeEEEEeC---------CHHHHHHHHhCCCCCEEEecCc
Confidence 579999974 68999987778899999999999999999999666554 3999999999999999988899
Q ss_pred eecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCcee
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (940)
.+++|.+.+.||.||.....++++++..
T Consensus 71 ~~~~r~~~~~~s~p~~~~~~~l~~~~~~---------------------------------------------------- 98 (227)
T 3tql_A 71 ITTARQKEVDFTDPYYTNSVSFIADKNT---------------------------------------------------- 98 (227)
T ss_dssp CCTTGGGTEEECSCSBCCEEEEEEETTS----------------------------------------------------
T ss_pred CCHhHHhheecccceeccceEEEEeCCC----------------------------------------------------
Confidence 9999999999999999999999998775
Q ss_pred ehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHHH
Q 002301 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 707 (940)
Q Consensus 628 ~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~~ 707 (940)
+.+++++||. |++||+..|+....
T Consensus 99 ------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~~ 122 (227)
T 3tql_A 99 ------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFDS 122 (227)
T ss_dssp ------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHHH
T ss_pred ------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHHH
Confidence 3347899997 88999999999888
Q ss_pred HHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeCCcccc-----CcceeecCC
Q 002301 708 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTK-----NGWGFAFPR 780 (940)
Q Consensus 708 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~-----~~~~~~~~k 780 (940)
++.+..... .+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. ++.+++..+.. .+++++++|
T Consensus 123 ~l~~~~~~~-~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (227)
T 3tql_A 123 YLQDSFGNS-ITIQRYPSEEDALMDLTS----GRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKK 197 (227)
T ss_dssp HHHHHHGGG-SEEEEESSHHHHHHHHTT----TSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEET
T ss_pred HHHHhcccc-ceEEEcCCHHHHHHHHHc----CCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcC
Confidence 886543221 567788999999999999 999999999999999888765 37766544433 356999999
Q ss_pred CCc-chHHHHHHHHhcccccchHHHHHhhc
Q 002301 781 DSP-LAVDISTAILKLSENGDLQRIHDKWL 809 (940)
Q Consensus 781 ~sp-l~~~~~~~il~l~e~G~~~~i~~kw~ 809 (940)
++| +.+.||++|.++.++|.+++|.+|||
T Consensus 198 ~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 198 GNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp TCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 998 99999999999999999999999996
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.87 E-value=1.2e-21 Score=202.96 Aligned_cols=218 Identities=20% Similarity=0.310 Sum_probs=189.0
Q ss_pred CceEEEEecCcccccceEEe--CCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 467 GRHLRIGVPNRVSFREFVSV--KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~--~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
..+|+||+. +|+||.+. +.++++.|+++|+++.+++++|+++++... ++|.+++.++.+|++|++++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~ 71 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVRQ--------NSISAGITAVAEGELDILIG 71 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC-----CEESHHHHHHHHHHHHHTCCEEEEEC--------SCHHHHHHHHHTTSCSEEEE
T ss_pred CceEEEEec---CCCCeEEEecCCCCCEEEEeHHHHHHHHHHcCCcEEEEEe--------CCHHHHHHHHHCCCcCEEEe
Confidence 357999997 47888886 678899999999999999999988665554 25999999999999999998
Q ss_pred ceeeecCcc--eeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCc
Q 002301 545 DIAIITNRT--KMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPK 622 (940)
Q Consensus 545 ~~~~t~~R~--~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (940)
++..+++|. +.++|+.||.....++++++...
T Consensus 72 ~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------------- 105 (233)
T 1ii5_A 72 PISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT---------------------------------------------- 105 (233)
T ss_dssp EEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT----------------------------------------------
T ss_pred eeecCccccccceeEEccceeecCeEEEEECCCC----------------------------------------------
Confidence 889999999 99999999999999999987750
Q ss_pred CCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeC
Q 002301 623 RQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVN 702 (940)
Q Consensus 623 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~g 702 (940)
..+++++||. |++||+..|
T Consensus 106 -----------------------------------------------------------~~i~~~~dL~--g~~v~~~~g 124 (233)
T 1ii5_A 106 -----------------------------------------------------------PLFRSVGDLK--NKEVAVVRD 124 (233)
T ss_dssp -----------------------------------------------------------TTCSSGGGGT--TCEEEEETT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCeEEEECC
Confidence 2788999998 889999999
Q ss_pred chHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeCCccccCcceeecCC
Q 002301 703 SFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFAFPR 780 (940)
Q Consensus 703 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k 780 (940)
+....++.+. ..+++.+.+.++++++|.+ |++|+++.+...+.+++++.. ++.+++..+...+++++++|
T Consensus 125 ~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 196 (233)
T 1ii5_A 125 TTAVDWANFY----QADVRETNNLTAAITLLQK----KQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKE 196 (233)
T ss_dssp SHHHHHHHHT----TCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEET
T ss_pred ccHHHHHHHc----CCCeEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcC
Confidence 9888888543 2457778899999999999 899999999999999888764 68888877777889999999
Q ss_pred CCcchHHHHHHHHhcccccchHHHHHhhcc
Q 002301 781 DSPLAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 781 ~spl~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
++|+.+.+|++|.+|.++|.+++|.+||+.
T Consensus 197 ~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~ 226 (233)
T 1ii5_A 197 NSPLQKTINVEMLNLLYSRVIAEFTERWLG 226 (233)
T ss_dssp TCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 999999999999999999999999999998
No 56
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.86 E-value=2e-21 Score=201.51 Aligned_cols=219 Identities=18% Similarity=0.323 Sum_probs=193.5
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
..++|+||+. +.|+||.+.+.++.+.|+++|+++++++++|++++++..+ |.+++.++.+|++|++ .+
T Consensus 9 ~~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~-~~ 76 (234)
T 3h7m_A 9 RHRTIVVGGD--RDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGA---------WSEMFSALKSGRVDVL-QG 76 (234)
T ss_dssp SSSCEEEEEE--TEETTTEEECTTSCEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSSSEE-EE
T ss_pred CCCEEEEEec--CCCCCeEEECCCCCEeeeEHHHHHHHHHHcCCceEEEeCC---------HHHHHHHHhCCCeeEE-Ee
Confidence 3568999995 3789999877788999999999999999999997776554 9999999999999995 56
Q ss_pred eeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCc
Q 002301 546 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (940)
Q Consensus 546 ~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (940)
+..+++|.+.+.||.||.....++++++..
T Consensus 77 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 106 (234)
T 3h7m_A 77 ISWSEKRARQIDFTPPHTIVYHAIFARRDS-------------------------------------------------- 106 (234)
T ss_dssp EECCHHHHTTEEEEEEEEEEEEEEEEESSS--------------------------------------------------
T ss_pred ccCCHhHHhhcCCCccccccceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998776
Q ss_pred eeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchH
Q 002301 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (940)
Q Consensus 626 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~ 705 (940)
+.+++++||. |++||+..|+..
T Consensus 107 --------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~~ 128 (234)
T 3h7m_A 107 --------------------------------------------------------PPAAGLEDLR--GRKVALHRDGIM 128 (234)
T ss_dssp --------------------------------------------------------CCCSSGGGGT--TSCEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEeCchH
Confidence 4689999997 889999999988
Q ss_pred HHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC--CcEEEeCCccccCcceeecCCCCc
Q 002301 706 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQVFTKNGWGFAFPRDSP 783 (940)
Q Consensus 706 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp 783 (940)
..++.+. ....+++.+.+.++.+++|.+ |++|+++.+...+.+++++. .++..++..+...+++++++|++|
T Consensus 129 ~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (234)
T 3h7m_A 129 HEYLAER--GYGKDLVLTPTPADALRLLAA----GGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDA 202 (234)
T ss_dssp HHHHHTT--TCGGGEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCH
T ss_pred HHHHHhc--CCCceEEEeCCHHHHHHHHHc----CCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCH
Confidence 8888542 233577888999999999999 99999999999999888874 368888877788889999999998
Q ss_pred -chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 784 -LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 784 -l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+.+.||++|.++.++|.+++|.+||+.
T Consensus 203 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 203 ELLARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 999999999999999999999999997
No 57
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.86 E-value=1.1e-21 Score=205.37 Aligned_cols=223 Identities=15% Similarity=0.197 Sum_probs=190.1
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCC-CccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLP-YAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~-~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
.++|+|++.. .|+||.+ ..++++.|+++||++++++++| +++++... +|.+++.++.+|++|+++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~-~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 74 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIY-EENGELTGYEIEVVRAIFKDSDKYDVKFEKT---------EWSGVFAGLDADRYNMAVNN 74 (246)
T ss_dssp CEEEEEEECC--CSTTTSE-EETTEEESHHHHHHHHHHTTCSSEEEEEEEC---------CHHHHHHHHHTTSCSEECSS
T ss_pred CCEEEEEeCC--CcCCeEE-cCCCCCcccHHHHHHHHHHHcCCceEEEEeC---------CHHHHHHHHhCCCcCEEecc
Confidence 4679999974 6788888 4678999999999999999999 98666554 39999999999999999988
Q ss_pred eeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCc
Q 002301 546 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (940)
Q Consensus 546 ~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (940)
++.+++|.+.+.||.||.....++++++..
T Consensus 75 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 104 (246)
T 4eq9_A 75 LSYTKERAEKYLYAAPIAQNPNVLVVKKDD-------------------------------------------------- 104 (246)
T ss_dssp CCCCHHHHHHEEECCCCEECCEEEEEETTC--------------------------------------------------
T ss_pred cccChhhhhceeeccceecCceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998755
Q ss_pred eeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchH
Q 002301 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (940)
Q Consensus 626 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~ 705 (940)
.++++++||. |++||+..|+..
T Consensus 105 --------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~ 126 (246)
T 4eq9_A 105 --------------------------------------------------------SSIKSLDDIG--GKSTEVVQATTS 126 (246)
T ss_dssp --------------------------------------------------------CSCSSGGGCT--TCEEEECTTCHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEecCccH
Confidence 5788999998 889999999988
Q ss_pred HHHHHh---hhCCCccCcc-cCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeCCccccCc-ceeec
Q 002301 706 RNYLVD---ELNIDESRLV-PLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNG-WGFAF 778 (940)
Q Consensus 706 ~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~-~~~~~ 778 (940)
..++.+ .......++. ...+.++++++|.+ |++|+++.+...+.+++++.. ++.++.......+ +++++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (246)
T 4eq9_A 127 AKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD----GQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLL 202 (246)
T ss_dssp HHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEE
T ss_pred HHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc----CCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEE
Confidence 888755 2222112333 23589999999999 999999999999999888754 6888877666665 89999
Q ss_pred CCCCc-chHHHHHHHHhcccccchHHHHHhhcccCC
Q 002301 779 PRDSP-LAVDISTAILKLSENGDLQRIHDKWLLRSA 813 (940)
Q Consensus 779 ~k~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~~~~ 813 (940)
+|++| +.+.||++|.++.++|.+++|.+||+....
T Consensus 203 ~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~ 238 (246)
T 4eq9_A 203 AQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGDTY 238 (246)
T ss_dssp ETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCCCC
Confidence 99998 999999999999999999999999998443
No 58
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.86 E-value=2.9e-21 Score=201.17 Aligned_cols=222 Identities=18% Similarity=0.290 Sum_probs=187.0
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
.++|+||+. ++|+||.+.+.++++.|+++|+++++++++|+++++... +|.+++.++.+|++|++++++
T Consensus 3 ~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 71 (239)
T 1lst_A 3 PQTVRIGTD--TTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVAS---------DFDALIPSLKAKKIDAIISSL 71 (239)
T ss_dssp CSEEEEEEC--SCBTTTBEECTTCCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECSSC
T ss_pred cceEEEEEC--CCcCCeeEECCCCCEeeEHHHHHHHHHHHHCCeEEEEeC---------CHHHHHHHHhCCCCCEEEECc
Confidence 367999994 378899886677899999999999999999998666554 399999999999999999889
Q ss_pred eeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCce
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (940)
+.+++|.+.++||.||.....++++++..
T Consensus 72 ~~t~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 100 (239)
T 1lst_A 72 SITDKRQQEIAFSDKLYAADSRLIAAKGS--------------------------------------------------- 100 (239)
T ss_dssp BCCHHHHHHCEECSCSBCCCEEEEEETTC---------------------------------------------------
T ss_pred CcCHHHhhceeecccceeCceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999998765
Q ss_pred eehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHH
Q 002301 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (940)
Q Consensus 627 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~ 706 (940)
+...+++||. |++||+..|+...
T Consensus 101 -------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~ 123 (239)
T 1lst_A 101 -------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQE 123 (239)
T ss_dssp -------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEcCccHH
Confidence 2225899997 8899999999888
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHH-HHhcC--CcEEEeCCcccc-----Ccceeec
Q 002301 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL-FLSTR--CEFSIVGQVFTK-----NGWGFAF 778 (940)
Q Consensus 707 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~-~~~~~--~~l~~~~~~~~~-----~~~~~~~ 778 (940)
.++.+.......+++.+.+.++.+++|.+ |++|+++.+...+.+ ++.+. .++.+++..+.. .++++++
T Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 199 (239)
T 1lst_A 124 AYANDNWRTKGVDVVAYANQDLIYSDLTA----GRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGL 199 (239)
T ss_dssp HHHHHHTGGGTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEE
T ss_pred HHHHHhcccCCCeEEEcCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEE
Confidence 88865432233467788999999999999 899999999888754 45443 358777765543 3689999
Q ss_pred CCCCc-chHHHHHHHHhcccccchHHHHHhhccc
Q 002301 779 PRDSP-LAVDISTAILKLSENGDLQRIHDKWLLR 811 (940)
Q Consensus 779 ~k~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~~ 811 (940)
+|++| +.+.+|++|.++.++|.+++|.+||+..
T Consensus 200 ~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 200 RKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred eCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 99998 9999999999999999999999999983
No 59
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.86 E-value=3e-21 Score=204.85 Aligned_cols=219 Identities=19% Similarity=0.272 Sum_probs=190.3
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
.++||||+.. +|+||.+.+.+|++.|+++|+++++++++|+++++... .+|.+++.++.+|++|++. ++
T Consensus 31 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~lg~~~~~~~~--------~~~~~~~~~l~~G~~D~~~-~~ 99 (267)
T 3mpk_A 31 HPVVKVAVLN--LFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGV--------DTVEELIAKLRSGEADMAG-AL 99 (267)
T ss_dssp CSEEEEEEET--EETTTEECCTTCCCBSHHHHHHHHHHHHHCCEEEEEEE--------SSHHHHHHHHHHTSCSEEE-EE
T ss_pred CCcEEEEeCC--CCCCeEEECCCCcEeeeHHHHHHHHHHHHCCeEEEEec--------CCHHHHHHHHHCCCccEEe-cc
Confidence 4689999963 68999987778899999999999999999999666544 3599999999999999976 69
Q ss_pred eeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCce
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (940)
+.+++|.+.+.||.||.....++++++..
T Consensus 100 ~~t~~r~~~~~fs~p~~~~~~~l~~~~~~--------------------------------------------------- 128 (267)
T 3mpk_A 100 FVNSARESFLSFSRPYVRNGMVIVTRQDP--------------------------------------------------- 128 (267)
T ss_dssp ECCGGGTTTEEECSCSEEECEEEEEESST---------------------------------------------------
T ss_pred cCChhhhcceEechhhccCceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999998876
Q ss_pred eehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHH
Q 002301 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (940)
Q Consensus 627 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~ 706 (940)
+.+++++||. |++||+..|+...
T Consensus 129 -------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~~~ 151 (267)
T 3mpk_A 129 -------------------------------------------------------DAPVDADHLD--GRTVALVRNSAAI 151 (267)
T ss_dssp -------------------------------------------------------TSCSSGGGCT--TCEEEEETTCTHH
T ss_pred -------------------------------------------------------CCCCCHHHHC--CCEEEEeCCchhH
Confidence 5688999998 8999999999988
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhc--CCcEEEeCCcc-ccCcceeecCCCCc
Q 002301 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST--RCEFSIVGQVF-TKNGWGFAFPRDSP 783 (940)
Q Consensus 707 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~-~~~~~~~~~~k~sp 783 (940)
.++.+. .+..+++.+++.++++++|.+ |++|+++.+...+.+++++ ..++.+.+... ...+++++++|++|
T Consensus 152 ~~l~~~--~~~~~~~~~~~~~~~l~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~ 225 (267)
T 3mpk_A 152 PLLQRR--YPQAKVVTADNPSEAMLMVAN----GQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQT 225 (267)
T ss_dssp HHHHHH--CTTSEEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCH
T ss_pred HHHHHh--CCCcEEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCH
Confidence 888653 334678889999999999999 9999999999999999887 34677776533 46678999999998
Q ss_pred -chHHHHHHHHhcccccchHHHHHhhccc
Q 002301 784 -LAVDISTAILKLSENGDLQRIHDKWLLR 811 (940)
Q Consensus 784 -l~~~~~~~il~l~e~G~~~~i~~kw~~~ 811 (940)
+.+.+|++|.++.++| +++|.+||+..
T Consensus 226 ~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 226 ELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp HHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred HHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 9999999999999997 99999999983
No 60
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.85 E-value=7.3e-21 Score=196.62 Aligned_cols=218 Identities=22% Similarity=0.368 Sum_probs=188.9
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
..++|+|++. ++|+||.+.+.++++.|+++|+++++++++|+++++... +|.+++.++.+|++|+++++
T Consensus 4 ~a~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 4 SARTLHFGTS--ATYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQ---------SFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp SCCEEEEEEC--CCBTTTBEECTTSCEESHHHHHHHHHHHHTTCEEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred cCCcEEEEeC--CCcCCceEECCCCCCcceeHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCceEEEec
Confidence 3568999996 478899886667899999999999999999998666554 39999999999999999977
Q ss_pred eeeecCcceeeeeccccccc-cEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCC
Q 002301 546 IAIITNRTKMADFTQPYIES-GLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (940)
Q Consensus 546 ~~~t~~R~~~v~ft~p~~~~-~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (940)
+..+++|.+.+.|+.||... ..++++++.
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 102 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKG-------------------------------------------------- 102 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETT--------------------------------------------------
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCC--------------------------------------------------
Confidence 89999999999999999999 999888753
Q ss_pred ceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCch
Q 002301 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (940)
Q Consensus 625 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~ 704 (940)
. +++++||. |++||+..|+.
T Consensus 103 ---------------------------------------------------------~-~~~~~dL~--g~~v~~~~g~~ 122 (229)
T 2y7i_A 103 ---------------------------------------------------------A-YHTFADLK--GKKVGLENGTT 122 (229)
T ss_dssp ---------------------------------------------------------S-CCSTGGGT--TCEEEEETTSH
T ss_pred ---------------------------------------------------------C-CCCHHHHC--CCEEEEecCCc
Confidence 3 67899997 88999999999
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCcccc-----CcceeecC
Q 002301 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTK-----NGWGFAFP 779 (940)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~ 779 (940)
...++.+. .+..+++.+.+.++.+++|.+ |++|+++.+...+.+++++..++.+++..+.. .+++++++
T Consensus 123 ~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (229)
T 2y7i_A 123 HQRYLQDK--QQAITPVAYDSYLNAFTDLKN----NRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVR 196 (229)
T ss_dssp HHHHHHHH--CTTSEEEEESCHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEEC
T ss_pred HHHHHHHh--CCCCeEEecCCHHHHHHHHHc----CCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEe
Confidence 88888653 233567788899999999999 99999999999999999887788888765432 47899999
Q ss_pred CCCc-chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 780 RDSP-LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 780 k~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
|++| +.+.+|++|.++.++|.+++|.+||+.
T Consensus 197 ~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 197 KDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp TTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 9998 999999999999999999999999985
No 61
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.85 E-value=6.8e-21 Score=201.14 Aligned_cols=222 Identities=18% Similarity=0.287 Sum_probs=190.9
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
...+|+|++. +.|+||.+.+.+|++.||++|+++++++++|+++++... +|.+++.++.+|++|+++++
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 95 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEY---------AWDGMLGAVASGQADVAFSG 95 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEECTTCCEESHHHHHHHHHHHHHTCEEEEEEC---------CHHHHHHHHHHTSSSEEEEE
T ss_pred cCCeEEEEEC--CCCCCeEEECCCCCEEEeHHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCCCEEEEC
Confidence 3578999996 378899887778899999999999999999998665544 49999999999999999988
Q ss_pred eeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCc
Q 002301 546 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (940)
Q Consensus 546 ~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (940)
++.+++|.+.++||.||...+.+++++++.
T Consensus 96 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 125 (259)
T 4dz1_A 96 ISITDKRKKVIDFSEPYYINSFYLVSMANH-------------------------------------------------- 125 (259)
T ss_dssp EECCHHHHTTEEECCCSEEEEEEEEEETTS--------------------------------------------------
T ss_pred CcCCHHHhhccccccchhhCceEEEEEcCC--------------------------------------------------
Confidence 999999999999999999999999998765
Q ss_pred eeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchH
Q 002301 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (940)
Q Consensus 626 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~ 705 (940)
...|++++||. |++||+..|+..
T Consensus 126 -------------------------------------------------------~~~i~~~~dL~--g~~v~v~~g~~~ 148 (259)
T 4dz1_A 126 -------------------------------------------------------KITLNNLNELN--KYSIGYPRGMAY 148 (259)
T ss_dssp -------------------------------------------------------CCCCCSGGGGG--GSCEEEETTSTH
T ss_pred -------------------------------------------------------CCCCCCHHHhC--CCEEEEeCCcHH
Confidence 14789999998 899999999998
Q ss_pred HHHHHhhhCC---Cc-cCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhc-CCcEEEeCCccccCcceeecCC
Q 002301 706 RNYLVDELNI---DE-SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST-RCEFSIVGQVFTKNGWGFAFPR 780 (940)
Q Consensus 706 ~~~l~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k 780 (940)
..++.+.... +. .+++.+.+.++.+++|.+ |++|+++.+...+.+++++ ..++..........+++++++|
T Consensus 149 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 224 (259)
T 4dz1_A 149 SDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN----GNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKK 224 (259)
T ss_dssp HHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEET
T ss_pred HHHHHHhcccccccccceeEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeC
Confidence 8888653321 11 467788999999999999 9999999999988877765 3467666666667789999999
Q ss_pred CCcchHHHHHHHHhcccccchHHHHHhhcc
Q 002301 781 DSPLAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 781 ~spl~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
++++.+.||++|.+ ..++.++++.++|..
T Consensus 225 ~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~ 253 (259)
T 4dz1_A 225 GSPVRDDFNLWLKE-QGPQKISGIVDSWMK 253 (259)
T ss_dssp TCHHHHHHHHHHHH-HCHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHh-CCCeehHHHHHHHHh
Confidence 99999999999999 888899999999987
No 62
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.85 E-value=6.4e-21 Score=196.48 Aligned_cols=217 Identities=24% Similarity=0.394 Sum_probs=189.2
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+|+||+. ++|+||.+.++ +++.|+++|+++.+++++|+++++...+ |.+++.++.+|++|++++++.
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~-g~~~G~~~dl~~~~~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~~~ 70 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQG-DLYVGFDVDLWAAIAKELKLDYELKPMD---------FSGIIPALQTKNVDLALAGIT 70 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEET-TEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSSSEEEEEEE
T ss_pred ceEEEEEC--CCCCCeeEecC-CcEEEeeHHHHHHHHHHhCCEEEEEECC---------HHHHHHHHhCCCCCEEEEcCc
Confidence 46999987 37888887543 8999999999999999999987766543 999999999999999998888
Q ss_pred eecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCcee
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (940)
.+++|.+.+.|+.||.....++++++..
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~---------------------------------------------------- 98 (226)
T 1wdn_A 71 ITDERKKAIDFSDGYYKSGLLVMVKANN---------------------------------------------------- 98 (226)
T ss_dssp CCHHHHTTSEECSCCEEEEEEEEEETTC----------------------------------------------------
T ss_pred CCHHHhCccccccchhcCceEEEEeCCC----------------------------------------------------
Confidence 9999999999999999999999998765
Q ss_pred ehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHHH
Q 002301 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 707 (940)
Q Consensus 628 ~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~~ 707 (940)
+.+++++||. |++||+..|+....
T Consensus 99 ------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~~ 122 (226)
T 1wdn_A 99 ------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSVD 122 (226)
T ss_dssp ------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHHH
T ss_pred ------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHHH
Confidence 4688899997 88999999998888
Q ss_pred HHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC--CcEEEeCCccccCcceeecCCCCc-c
Q 002301 708 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQVFTKNGWGFAFPRDSP-L 784 (940)
Q Consensus 708 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l 784 (940)
++.+. .+..+++.+.+.++.+++|.+ |++|+++.+...+.+++++. .++.+++..+...+++++++|++| +
T Consensus 123 ~l~~~--~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l 196 (226)
T 1wdn_A 123 YAKAN--IKTKDLRQFPNIDNAYMELGT----NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDEL 196 (226)
T ss_dssp HHHHH--CCCSEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHH
T ss_pred HHHHh--CCCceEEEeCCHHHHHHHHHc----CCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHH
Confidence 88553 233467778899999999999 89999999999999988875 368887777777789999999986 9
Q ss_pred hHHHHHHHHhcccccchHHHHHhhcc
Q 002301 785 AVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 785 ~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
.+.+|++|.++.++|.+++|.+||+.
T Consensus 197 ~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (226)
T 1wdn_A 197 RDKVNGALKTLRENGTYNEIYKKWFG 222 (226)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 99999999999999999999999987
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.83 E-value=4.3e-21 Score=204.17 Aligned_cols=220 Identities=15% Similarity=0.234 Sum_probs=184.8
Q ss_pred CceEEEEecCcccccceEEeCCC---cceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEe
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGS---EMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 543 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~---~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~ 543 (940)
.++|+|++. ++|+||.+.+.+ +++.||++|+++++++++|+++++...+ |.+++.++.+|++|+++
T Consensus 20 ~~~l~v~~~--~~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~~---------~~~~~~~l~~G~~D~~~ 88 (271)
T 2iee_A 20 KGKIVVATS--GTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEMG---------IDGMLTAVNSGQVDAAA 88 (271)
T ss_dssp HTEEEEEEC--SCBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEEEECC---------STTHHHHHHHTSSSEEC
T ss_pred CCeEEEEEC--CCCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCeEEEEECC---------HHHHHHHHHCCCcCEEE
Confidence 467999987 378898885445 8999999999999999999986666543 99999999999999999
Q ss_pred eceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcC
Q 002301 544 GDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 623 (940)
Q Consensus 544 ~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (940)
++++.|++|.+.++||.||.....++++++...
T Consensus 89 ~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~----------------------------------------------- 121 (271)
T 2iee_A 89 NDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL----------------------------------------------- 121 (271)
T ss_dssp SSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG-----------------------------------------------
T ss_pred eCCcCChhhccceEEeecceeCCeEEEEECCCC-----------------------------------------------
Confidence 888899999999999999999999999987650
Q ss_pred CceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCc
Q 002301 624 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 703 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs 703 (940)
..|++++||. |++||+..|+
T Consensus 122 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 141 (271)
T 2iee_A 122 ----------------------------------------------------------SGIKTLKDLK--GKKAAGAATT 141 (271)
T ss_dssp ----------------------------------------------------------GGCSSGGGGT--TCEEESCTTS
T ss_pred ----------------------------------------------------------CCCCCHHHhC--CCEEEEeCCc
Confidence 2688999997 8899999999
Q ss_pred hHHHHHHhhhCCCccCcccCCCHHHH--HHHhhcCCCCCceEEEEechhhHHHHHh-cC--CcEEEe-CCccccCcceee
Q 002301 704 FARNYLVDELNIDESRLVPLNSPEEY--AKALKDGPHKGGVAAVVDDRAYAELFLS-TR--CEFSIV-GQVFTKNGWGFA 777 (940)
Q Consensus 704 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~g~~~a~~~~~~~~~~~~~-~~--~~l~~~-~~~~~~~~~~~~ 777 (940)
....++.+ .+. +++.+.+.++. +++|.+ |++| ++.+...+.+++. +. .++.++ +..+...+++++
T Consensus 142 ~~~~~l~~-~~~---~~~~~~~~~~~~l~~~L~~----GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (271)
T 2iee_A 142 VYMEVARK-YGA---KEVIYDNATNEQYLKDVAN----GRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALV 212 (271)
T ss_dssp HHHHHHHH-TTC---EEEECSSCCHHHHHHHHHH----TSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCE
T ss_pred cHHHHHHH-cCC---ceEEeCChhhHHHHHHHHc----CCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEE
Confidence 88888853 332 67788888888 999999 8999 5665555555554 43 367777 667777889999
Q ss_pred cCCCCc-chHHHHHHHHhcccccchHHHHHhhcc-cCC
Q 002301 778 FPRDSP-LAVDISTAILKLSENGDLQRIHDKWLL-RSA 813 (940)
Q Consensus 778 ~~k~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~-~~~ 813 (940)
++|++| +.+.||++|.+|.++|.+++|.+||+. ...
T Consensus 213 ~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~~~~~ 250 (271)
T 2iee_A 213 MKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADV 250 (271)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTTCCT
T ss_pred EcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCCcccc
Confidence 999998 999999999999999999999999998 443
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.83 E-value=2.3e-20 Score=196.76 Aligned_cols=221 Identities=17% Similarity=0.192 Sum_probs=187.4
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCc-cCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYA-VPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~-~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
.++|+|++. +|+||.+.+.++++.|+++|+++++++++|++ +++...+ |.+++.++.+|++|+++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~ 79 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASISE---------YGAMIPGLQAGRHDAITAG 79 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECTTCCEESHHHHHHHHHHHHTTCCEEEEEECC---------GGGHHHHHHTTSCSEECSC
T ss_pred CCeEEEEcC---CCCCeeEECCCCCcccccHHHHHHHHHHcCCCeeeEEeCC---------HHHHHHHHHCCCcCEEEec
Confidence 357999996 67888886667899999999999999999998 7766543 9999999999999999878
Q ss_pred eeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCc
Q 002301 546 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (940)
Q Consensus 546 ~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (940)
+..+++|.+.++||.||...+.++++++...
T Consensus 80 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------- 110 (257)
T 2q88_A 80 LFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------- 110 (257)
T ss_dssp CBCCHHHHTTSEECSCCCEECEEEEEETTCT-------------------------------------------------
T ss_pred ccCCHHHHhccccccchhcCceEEEEECCCc-------------------------------------------------
Confidence 9999999999999999999999999987650
Q ss_pred eeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhC-CCCeEEEeCch
Q 002301 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSS-NYPIGYQVNSF 704 (940)
Q Consensus 626 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~-~~~i~~~~gs~ 704 (940)
..+++++||..+ |++||+..|+.
T Consensus 111 --------------------------------------------------------~~i~~~~dL~~~~g~~i~~~~g~~ 134 (257)
T 2q88_A 111 --------------------------------------------------------LGLKSYKDIADNPDAKIGAPGGGT 134 (257)
T ss_dssp --------------------------------------------------------TCCCBHHHHHHCTTCCEEECTTSH
T ss_pred --------------------------------------------------------cCCCCHHHHhccCCceEEEECCcc
Confidence 268899999865 78899999999
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeCCccc--cCcceeecCC
Q 002301 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFT--KNGWGFAFPR 780 (940)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~--~~~~~~~~~k 780 (940)
...++.+ .+.+..+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. .+..+..... ..+++++++|
T Consensus 135 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~----grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 209 (257)
T 2q88_A 135 EEKLALE-AGVPRDRVIVVPDGQSGLKMLQD----GRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRK 209 (257)
T ss_dssp HHHHHHH-TTCCGGGEEECSSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECG
T ss_pred cHHHHHh-cCCCCceEEEcCCHHHHHHHHHc----CCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcC
Confidence 8888853 44555578889999999999999 999999999999999887743 3555443211 2457889999
Q ss_pred CCc-chHHHHHHHHhcccccchHHHHHhhc
Q 002301 781 DSP-LAVDISTAILKLSENGDLQRIHDKWL 809 (940)
Q Consensus 781 ~sp-l~~~~~~~il~l~e~G~~~~i~~kw~ 809 (940)
+++ +.+.||++|.++.++|.+++|.+||.
T Consensus 210 ~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 210 GDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp GGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 977 99999999999999999999999993
No 65
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.83 E-value=2.2e-20 Score=192.76 Aligned_cols=218 Identities=26% Similarity=0.379 Sum_probs=184.1
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+|+||+. +|+||.+. .++++.|+++|+++.+++++|+++++... ++|.+++.++.+|++|++++++.
T Consensus 3 ~~l~v~~~---~~~P~~~~-~~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~~ 70 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-NKGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAIS 70 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C---CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSCB
T ss_pred ceEEEEec---CCCCeEEe-cCCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEeccc
Confidence 57999997 47888775 67889999999999999999998666654 24999999999999999998888
Q ss_pred eecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCcee
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (940)
.+++|.+.+.|+.||.....++++++..+
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~~--------------------------------------------------- 99 (228)
T 2pyy_A 71 ITAEREQNFDFSLPIFASGLQIMVRNLES--------------------------------------------------- 99 (228)
T ss_dssp CCHHHHHHSEECSCSEEEEEEEEEEC------------------------------------------------------
T ss_pred cCHHHHccceecccchhcceEEEEECCcc---------------------------------------------------
Confidence 99999999999999999999999987651
Q ss_pred ehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHHH
Q 002301 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 707 (940)
Q Consensus 628 ~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~~ 707 (940)
....+++++||. |+++|+..|+....
T Consensus 100 ----------------------------------------------------~~~~~~~~~dL~--g~~i~~~~g~~~~~ 125 (228)
T 2pyy_A 100 ----------------------------------------------------GTGDIRSIDDLP--GKVVATTAGSTAAT 125 (228)
T ss_dssp ------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHHH
T ss_pred ----------------------------------------------------ccCCcCCHHHcC--CCeEEEEcCcHHHH
Confidence 014688999997 88999999998888
Q ss_pred HHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeCCccccCcceeecCCCCcch
Q 002301 708 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFAFPRDSPLA 785 (940)
Q Consensus 708 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl~ 785 (940)
++.+ .+ .+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. ++.+++..+...+++++++|++++.
T Consensus 126 ~l~~-~~---~~~~~~~~~~~~~~~l~~----g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (228)
T 2pyy_A 126 YLRE-HH---ISVLEVPKIEEAYKALQT----KKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYR 197 (228)
T ss_dssp HHHH-TT---CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTH
T ss_pred HHHH-cC---CceEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHH
Confidence 8854 22 356778899999999999 899999999999998887753 6877776676778999999999999
Q ss_pred HHHHHHHHhcccccchHHHHHhhcc
Q 002301 786 VDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 786 ~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+.+|++|.++.++|.+++|.+||+.
T Consensus 198 ~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 198 KPINQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 9999999999999999999999997
No 66
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.83 E-value=6e-20 Score=194.73 Aligned_cols=218 Identities=19% Similarity=0.258 Sum_probs=193.2
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
..+++|++.. .|+||.+.+.++++.|+++|+++.+++++|+++++... +|.+++.++.+|++|++++++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 98 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYVDAQGEVVGFDIDLAKAISEKLGKQLEVREF---------AFDALILNLKKHRIDAILAGM 98 (268)
T ss_dssp -CEEEEEECS--CBTTTBEECTTSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHHTSSSEECSCC
T ss_pred CCeEEEEECC--CCCCceEECCCCCEEEEEHHHHHHHHHHhCCeEEEEec---------CHHHHHHHHhCCCccEEeecC
Confidence 4679999863 67888887778899999999999999999988665544 399999999999999999889
Q ss_pred eeecCcceeeeeccccc--cccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCC
Q 002301 547 AIITNRTKMADFTQPYI--ESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~--~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (940)
..+++|.+.++| .||. ..+.++++++..
T Consensus 99 ~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------- 128 (268)
T 3qax_A 99 SITPSRQKEIAL-LPYYGDEVQELMVVSKRS------------------------------------------------- 128 (268)
T ss_dssp BCCHHHHTTSEE-EEEECCCBCEEEEEEETT-------------------------------------------------
T ss_pred ccCHhHhcceee-ecceecccceEEEEECCC-------------------------------------------------
Confidence 999999999999 9999 899999998875
Q ss_pred ceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCch
Q 002301 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (940)
Q Consensus 625 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~ 704 (940)
..+++++||. |++||+..|+.
T Consensus 129 ---------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~ 149 (268)
T 3qax_A 129 ---------------------------------------------------------LETPVLPLTQ--YSSVAVQTGTY 149 (268)
T ss_dssp ---------------------------------------------------------SCSCCCCGGG--SSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEecCcH
Confidence 5788999998 89999999999
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCccccCc----ceeecCC
Q 002301 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNG----WGFAFPR 780 (940)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k 780 (940)
...++.. .+..+++.+++.++.+++|.+ |++|+++.+...+.+++++..++.+++..+...+ ++++++|
T Consensus 150 ~~~~l~~---~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 222 (268)
T 3qax_A 150 QEHYLLS---QPGICVRSFDSTLEVIMEVRY----GKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAK 222 (268)
T ss_dssp HHHHHHT---STTCCEEEESCHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECT
T ss_pred HHHHHHh---CCCceEEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeC
Confidence 8888854 344677888999999999999 9999999999999999998877888877777777 9999999
Q ss_pred CCc-chHHHHHHHHhcccccchHHHHHhhccc
Q 002301 781 DSP-LAVDISTAILKLSENGDLQRIHDKWLLR 811 (940)
Q Consensus 781 ~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~~ 811 (940)
++| +.+.+|++|.++.++|.+++|.+||+..
T Consensus 223 ~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 254 (268)
T 3qax_A 223 DRPEEIQTIQQAITDLKSEGVIQSLTKKWQLS 254 (268)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 998 9999999999999999999999999983
No 67
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.82 E-value=9e-20 Score=194.05 Aligned_cols=219 Identities=21% Similarity=0.356 Sum_probs=189.1
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
...+|+|++.. .|+||.+. .++++.|+++|+++++++++|+++++...+ |.+++.++.+|++|+++++
T Consensus 40 ~~~~l~v~~~~--~~~P~~~~-~~g~~~G~~~dl~~~i~~~~g~~v~~~~~~---------~~~~~~~l~~G~~D~~~~~ 107 (272)
T 2pvu_A 40 TKKKVVVGTDA--AFAPFEYM-QKGKIVGFDVDLLDAVMKAAGLDYELKNIG---------WDPLFASLQSKEVDMGISG 107 (272)
T ss_dssp CCCCEEEEECC--CBTTTBEE-ETTEEESHHHHHHHHHHHHHTCCEEEEECC---------HHHHHHHHHHTSSSEECSS
T ss_pred cCCeEEEEECC--CCCCeEEe-cCCeEEEEHHHHHHHHHHHhCCceEEEECC---------HHHHHHHHhCCCCCEEEeC
Confidence 34689999973 67888775 368899999999999999999986655543 9999999999999999988
Q ss_pred eeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCc
Q 002301 546 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (940)
Q Consensus 546 ~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (940)
+..+++|.+.+.|+.||.....++++++..
T Consensus 108 ~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 137 (272)
T 2pvu_A 108 ITITDERKQSYDFSDPYFEATQVILVKQGS-------------------------------------------------- 137 (272)
T ss_dssp CBCCHHHHTTEEECSCCEEECEEEEEETTC--------------------------------------------------
T ss_pred CcCCHHHHhcCccchhhhccceEEEEECCC--------------------------------------------------
Confidence 889999999999999999999999998764
Q ss_pred eeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchH
Q 002301 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (940)
Q Consensus 626 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~ 705 (940)
++++++||. |++|++..|+..
T Consensus 138 ---------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~ 158 (272)
T 2pvu_A 138 ---------------------------------------------------------PVKNALDLK--GKTIGVQNATTG 158 (272)
T ss_dssp ---------------------------------------------------------CCCSGGGGT--TSCEEEETTSHH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCeEEEEcCchH
Confidence 488999997 889999999988
Q ss_pred HHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeCCcc--ccCcceeecCCC
Q 002301 706 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVF--TKNGWGFAFPRD 781 (940)
Q Consensus 706 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~--~~~~~~~~~~k~ 781 (940)
..++.+..+ ...+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. ++.+++... ...+++++++|+
T Consensus 159 ~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~ 233 (272)
T 2pvu_A 159 QEAAEKLFG-KGPHIKKFETTVVAIMELLN----GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKN 233 (272)
T ss_dssp HHHHHHHHC-SSTTEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETT
T ss_pred HHHHHHhcC-CCCeEEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCC
Confidence 888866544 34567788999999999999 899999999999999888764 388887653 566789999999
Q ss_pred CcchHHHHHHHHhcccccchHHHHHhhcc
Q 002301 782 SPLAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 782 spl~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
..+.+.+|++|.++.++|.+++|.+||+.
T Consensus 234 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 262 (272)
T 2pvu_A 234 SELKAKVDEALKNVINSGKYTEIYKKWFG 262 (272)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 44999999999999999999999999997
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.82 E-value=4.9e-20 Score=195.52 Aligned_cols=219 Identities=22% Similarity=0.341 Sum_probs=191.4
Q ss_pred ceEEEEecCcccccceEE---eCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 468 RHLRIGVPNRVSFREFVS---VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~---~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
.+++|++. +.|+||.+ .++++++.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++
T Consensus 39 ~~l~v~~~--~~~~P~~~~~~~~~~g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 107 (269)
T 4i62_A 39 GKLVVALN--PDFAPFEYQKVVDGKNQIVGSDIELAKAIATELGVELELSPM---------SFDNVLASVQSGKADLAIS 107 (269)
T ss_dssp TEEEEEEC--SCBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTCEEEEEEC---------CHHHHHHHHHTTSCSEECS
T ss_pred CeEEEEec--CCCCCceeecccCCCCcEeeecHHHHHHHHHHHCCceEEEEc---------CHHHHHHHHhCCCccEEec
Confidence 57999987 36788887 6788999999999999999999998666543 3999999999999999998
Q ss_pred ceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCC
Q 002301 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (940)
Q Consensus 545 ~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (940)
++..+++|.+.+.|+.||.....++++++..
T Consensus 108 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 138 (269)
T 4i62_A 108 GVSKTDERSKVFDFSTPYYTAKNKLIVKKSD------------------------------------------------- 138 (269)
T ss_dssp SCBCCHHHHTTEEECSCCEECCEEEEEEGGG-------------------------------------------------
T ss_pred CCcCCHhHhhceecccchhhcceEEEEECCc-------------------------------------------------
Confidence 8999999999999999999999999998774
Q ss_pred ceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCch
Q 002301 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (940)
Q Consensus 625 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~ 704 (940)
..+|++++||. |++||+..|+.
T Consensus 139 --------------------------------------------------------~~~i~~~~dL~--g~~i~~~~g~~ 160 (269)
T 4i62_A 139 --------------------------------------------------------LATYQSVNDLA--QKKVGAQKGSI 160 (269)
T ss_dssp --------------------------------------------------------TTTCSSGGGGC---CEEEEETTSH
T ss_pred --------------------------------------------------------cccccCHHHhC--CCeEEEecCch
Confidence 15789999998 89999999999
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCccc---cCcceeecCCC
Q 002301 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFT---KNGWGFAFPRD 781 (940)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~k~ 781 (940)
...++.+.. +..+++.+++.++.+++|.+ |++|+++.+...+.++++++.++......+. ..+++++++|+
T Consensus 161 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (269)
T 4i62_A 161 QETMAKDLL--QNSSLVSLPKNGNLITDLKS----GQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKD 234 (269)
T ss_dssp HHHHHHHHC--TTSEEEEESCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESS
T ss_pred HHHHHHHhC--CCCcEEecCCHHHHHHHHHc----CCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCC
Confidence 888885532 34567888999999999999 9999999999999999988777776655444 56789999999
Q ss_pred Cc-chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 782 SP-LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 782 sp-l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+| +.+.+|++|.++.++|.+++|.+||+.
T Consensus 235 ~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 235 SKELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 98 999999999999999999999999997
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.81 E-value=1.2e-19 Score=195.27 Aligned_cols=217 Identities=19% Similarity=0.249 Sum_probs=190.5
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhC---CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l---~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
.+|+|++.. +|+||.+.+.++...|+++|+++.+++++ |+++++...+ |.+++..+.+|++|++++
T Consensus 44 ~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~~---------~~~~~~~l~~G~~D~~~~ 112 (292)
T 1xt8_A 44 GVVRIGVFG--DKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVE---------AANRVEFLKSNKVDIILA 112 (292)
T ss_dssp SSEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHHSCTTCEEEEECC---------GGGHHHHHHTTSCSEECS
T ss_pred CeEEEEECC--CCCCeeEECCCCCEeeEhHHHHHHHHHHhccCCceEEEEEcC---------HHHHHHHHhCCCeeEEee
Confidence 579999863 68899886677899999999999999999 9986665543 999999999999999988
Q ss_pred ceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCC
Q 002301 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (940)
Q Consensus 545 ~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (940)
++..+++|.+.++|+.||.....++++++.
T Consensus 113 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~-------------------------------------------------- 142 (292)
T 1xt8_A 113 NFTQTPQRAEQVDFCSPYMKVALGVAVPKD-------------------------------------------------- 142 (292)
T ss_dssp SCBCCHHHHTTEEECCCCEEEEEEEEEETT--------------------------------------------------
T ss_pred cCCCCcchhcceeeeccceecceEEEEECC--------------------------------------------------
Confidence 888999999999999999999999998765
Q ss_pred ceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCch
Q 002301 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (940)
Q Consensus 625 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~ 704 (940)
.++++++||. |++||+..|+.
T Consensus 143 ---------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~ 163 (292)
T 1xt8_A 143 ---------------------------------------------------------SNITSVEDLK--DKTLLLNKGTT 163 (292)
T ss_dssp ---------------------------------------------------------CCCCSSGGGT--TSEEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEeCCCc
Confidence 3678899998 88999999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCccccCcc-eeecCCCCc
Q 002301 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGW-GFAFPRDSP 783 (940)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp 783 (940)
...++.+.. +..+++.+.+.++.+++|.+ |++|+++.+...+.+++++..++.+++..+...++ +++++|++|
T Consensus 164 ~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~ 237 (292)
T 1xt8_A 164 ADAYFTQNY--PNIKTLKYDQNTETFAALMD----KRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDK 237 (292)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCH
T ss_pred HHHHHHHhC--CCceEEEcCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCCCH
Confidence 888885432 33567788899999999999 99999999999999998887678887767777777 999999998
Q ss_pred -chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 784 -LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 784 -l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+.+.+|++|.++.++|.+++|.+||+.
T Consensus 238 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 238 ELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 999999999999999999999999998
No 70
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.81 E-value=1.2e-19 Score=195.00 Aligned_cols=217 Identities=23% Similarity=0.326 Sum_probs=191.0
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhC---CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l---~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
.+||||+. ++|+||.+.+.++.+.|+.+|+++.+++++ |++++++..+ |.+++..+.+|++|++++
T Consensus 55 ~~l~vg~~--~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~~---------~~~~~~~l~~G~~D~~~~ 123 (291)
T 2yjp_A 55 GVIRIGVF--GDKPPFGYVDANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTE---------AANRVEYVRSGKVDLILA 123 (291)
T ss_dssp TCEEEEEC--SEETTTEEECTTSCEESHHHHHHHHHHHHHHSCGGGEEEEECC---------GGGHHHHHHTTSCSEECS
T ss_pred CeEEEEEc--CCCCCceEECCCCCEeehHHHHHHHHHHHhccCCceEEEEEcc---------HHHHHHHHhCCCeeEEEe
Confidence 46999986 368899886678899999999999999999 9886655543 999999999999999998
Q ss_pred ceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCC
Q 002301 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (940)
Q Consensus 545 ~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (940)
++..+.+|.+.++|+.||.....++++++..
T Consensus 124 ~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (291)
T 2yjp_A 124 NFTQTPERAEAVDFADPYMKVALGVVSPKNK------------------------------------------------- 154 (291)
T ss_dssp SCBCCHHHHTTEEECCCCEEECEEEEEETTS-------------------------------------------------
T ss_pred CCCCChHHHccceeccCeeecceEEEEeCCC-------------------------------------------------
Confidence 8889999999999999999999999987653
Q ss_pred ceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCch
Q 002301 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (940)
Q Consensus 625 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~ 704 (940)
.|++++||. |++||+..|+.
T Consensus 155 ----------------------------------------------------------~i~sl~dL~--gk~v~~~~g~~ 174 (291)
T 2yjp_A 155 ----------------------------------------------------------PITDMAQLK--DQTLLVNKGTT 174 (291)
T ss_dssp ----------------------------------------------------------CCCSGGGGT--TSEEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCCc
Confidence 688999998 88999999998
Q ss_pred HHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCccccCcc-eeecCCCCc
Q 002301 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGW-GFAFPRDSP 783 (940)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp 783 (940)
...++.+.. +..+++.+.+.++.+++|.+ |++|+++.+.+.+.+++++..++.++...+...++ +++++|++|
T Consensus 175 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 248 (291)
T 2yjp_A 175 ADAFFTKSH--PEVKLLKFDQNTETFDALKD----GRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNA 248 (291)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETTCH
T ss_pred HHHHHHHhC--CCceEEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCCCH
Confidence 888885532 33567788899999999999 99999999999999988887778888777777778 999999998
Q ss_pred -chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 784 -LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 784 -l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+.+.||++|.++.++|.+++|.+||+.
T Consensus 249 ~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 249 DLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 999999999999999999999999987
No 71
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.81 E-value=2e-19 Score=192.99 Aligned_cols=221 Identities=19% Similarity=0.285 Sum_probs=188.5
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHh----CC---CccCeEEeeCCCCCCCCCHhHHHHHHHcCcc
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINL----LP---YAVPYKLIPFGDGHNNPSCTELVRLITAGVY 539 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~----l~---~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~ 539 (940)
.++|+||+.. .|+||.+.+.++++.|+++|+++++++. +| ++ +++++ ..|.+++.++.+|++
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~-------~~~~~~~~~l~~g~~ 84 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIP-------ITSQNRIPLLQNGTF 84 (287)
T ss_dssp HTEEEEEECS--EETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEE-------CCTTTHHHHHHTTSC
T ss_pred CCeEEEEEcC--CCCCceEECCCCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEE-------CCHHHHHHHHHCCCe
Confidence 3679999963 6889988666789999999999999976 67 56 44544 238999999999999
Q ss_pred cEEeeceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCC
Q 002301 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRG 619 (940)
Q Consensus 540 Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 619 (940)
|+++++++.+++|.+.++||.||...+.++++++..
T Consensus 85 D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------- 120 (287)
T 2vha_A 85 DFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG-------------------------------------------- 120 (287)
T ss_dssp SEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS--------------------------------------------
T ss_pred eEEeccccCCcchhhcccccceeeecceEEEEECCC--------------------------------------------
Confidence 999988999999999999999999999999998654
Q ss_pred CCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEE
Q 002301 620 PPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGY 699 (940)
Q Consensus 620 ~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~ 699 (940)
+|++++||. |++||+
T Consensus 121 ---------------------------------------------------------------~i~sl~dL~--g~~v~~ 135 (287)
T 2vha_A 121 ---------------------------------------------------------------DIKDFADLK--GKAVVV 135 (287)
T ss_dssp ---------------------------------------------------------------SCCSGGGGT--TCEEEE
T ss_pred ---------------------------------------------------------------CCCCHHHcC--CCEEEE
Confidence 578899998 889999
Q ss_pred EeCchHHHHHHhhhC--CCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC---CcEEEeCCccccCcc
Q 002301 700 QVNSFARNYLVDELN--IDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR---CEFSIVGQVFTKNGW 774 (940)
Q Consensus 700 ~~gs~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~ 774 (940)
..|+....++.+... ....+++.+.+.++.+++|.+ |++|+++.+...+.+++++. .++.+++..+...++
T Consensus 136 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~----G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
T 2vha_A 136 TSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES----GRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAY 211 (287)
T ss_dssp ETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEE
T ss_pred eCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc----CCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCce
Confidence 999988877754321 123467788999999999999 99999999999999888863 368888877777889
Q ss_pred eeecCCCCc-chHHHHHHHHhcccccchHHHHHhhccc
Q 002301 775 GFAFPRDSP-LAVDISTAILKLSENGDLQRIHDKWLLR 811 (940)
Q Consensus 775 ~~~~~k~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~~ 811 (940)
+++++|++| +.+.+|++|.++.++|.++++.+||+..
T Consensus 212 ~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 249 (287)
T 2vha_A 212 GCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKN 249 (287)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCC
Confidence 999999988 9999999999999999999999999983
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.80 E-value=1.8e-19 Score=192.72 Aligned_cols=216 Identities=19% Similarity=0.280 Sum_probs=188.9
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
..+|+|++.. +|+||.+.+.++.+.|+.+|+++.+++++|+++++...+ |.+++..|.+|++|++++++
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~G~~v~~~~~~---------~~~~~~~l~~G~~D~~~~~~ 124 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQ---------WDSMMAGLKAGRFDVVANQV 124 (283)
T ss_dssp TCEEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHTCEEEEEECC---------GGGHHHHHHHTSCSEECSSC
T ss_pred CCeEEEEECC--CCCCeeEECCCCCEeeehHHHHHHHHHHcCCceEEEECC---------HHHHHHHHHCCCcCEEEecC
Confidence 3579999874 589999876788999999999999999999986655542 99999999999999999888
Q ss_pred ee-ecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCc
Q 002301 547 AI-ITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (940)
Q Consensus 547 ~~-t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (940)
.. +.+|.+.++|+.||......+++++..
T Consensus 125 ~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~-------------------------------------------------- 154 (283)
T 2yln_A 125 GLTSPERQATFDKSEPYSWSGAVLVAHNDS-------------------------------------------------- 154 (283)
T ss_dssp CCCSHHHHHHEEECSCSEEECEEEEEETTC--------------------------------------------------
T ss_pred ccCChhhhcceEeccCeeeecEEEEEECCC--------------------------------------------------
Confidence 88 999999999999999999999998754
Q ss_pred eeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchH
Q 002301 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (940)
Q Consensus 626 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~ 705 (940)
+|++++||. |++|++..|+..
T Consensus 155 ---------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~~ 175 (283)
T 2yln_A 155 ---------------------------------------------------------NIKSIADIK--GVKTAQSLTSNY 175 (283)
T ss_dssp ---------------------------------------------------------SCCSGGGCT--TSEEEECTTSHH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEecCchH
Confidence 488999996 889999999988
Q ss_pred HHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeC-Cccc-cCcceeecCCC
Q 002301 706 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVG-QVFT-KNGWGFAFPRD 781 (940)
Q Consensus 706 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~-~~~~-~~~~~~~~~k~ 781 (940)
..++.+ .+ .+++.+.+..+.+++|.+ |++|+++.+...+.+++++.. ++.+++ ..+. ..+++++++|+
T Consensus 176 ~~~l~~-~~---~~~~~~~~~~~~~~~l~~----g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~ 247 (283)
T 2yln_A 176 GEKAKA-AG---AQLVPVDGLAQSLTLIEQ----KRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKG 247 (283)
T ss_dssp HHHHHH-TT---CEEEECSSHHHHHHHHHT----TSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESS
T ss_pred HHHHHH-cC---CeEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCC
Confidence 888854 22 457778899999999999 899999999999998887754 488887 6776 77899999999
Q ss_pred Cc-chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 782 SP-LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 782 sp-l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+| +.+.||++|.++.++|.+++|.+||+.
T Consensus 248 ~~~l~~~i~~al~~l~~~g~~~~i~~k~~~ 277 (283)
T 2yln_A 248 NDEAVAKFSTAINELKADGTLKKLGEQFFG 277 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 88 999999999999999999999999997
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.71 E-value=1.8e-17 Score=174.58 Aligned_cols=213 Identities=17% Similarity=0.323 Sum_probs=178.9
Q ss_pred ceEEEEecCcccccceEEeC-CCcceeeeeHHHHHHHHHhC---CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEe
Q 002301 468 RHLRIGVPNRVSFREFVSVK-GSEMTSGFCIDVFTAAINLL---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 543 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~-~~~~~~G~~idll~~l~~~l---~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~ 543 (940)
.+|+||+.. +++||.+.+ .++.+.|+++|+++.+++++ |+++++... +|.+++..+.+|++|+++
T Consensus 38 ~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~~---------~~~~~~~~l~~g~~D~~~ 106 (259)
T 2v25_A 38 GQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAV---------NAKTRGPLLDNGSVDAVI 106 (259)
T ss_dssp TCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTSEEEEEC---------CTTTHHHHHHTTSCSEEC
T ss_pred CeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcceEEEEc---------CHHHHHHHHhCCCCCEEE
Confidence 579999863 678888744 57899999999999999999 988655543 389999999999999999
Q ss_pred eceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcC
Q 002301 544 GDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 623 (940)
Q Consensus 544 ~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (940)
+++..+++|.+.++|+.||.....++++++..
T Consensus 107 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------------------------------------------------ 138 (259)
T 2v25_A 107 ATFTITPERKRIYNFSEPYYQDAIGLLVLKEK------------------------------------------------ 138 (259)
T ss_dssp SSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG------------------------------------------------
T ss_pred ecCccCHHHHhcCcccccceeCceEEEEeCCC------------------------------------------------
Confidence 88888899999999999999999999998653
Q ss_pred CceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCc
Q 002301 624 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 703 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs 703 (940)
++++++||. ++++++..|+
T Consensus 139 -----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~ 157 (259)
T 2v25_A 139 -----------------------------------------------------------KYKSLADMK--GANIGVAQAA 157 (259)
T ss_dssp -----------------------------------------------------------CCCSGGGCT--TCEEEEETTC
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCC
Confidence 577899998 8889999998
Q ss_pred hHHHHHHhhh---CCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCccccCcceeecCC
Q 002301 704 FARNYLVDEL---NIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGWGFAFPR 780 (940)
Q Consensus 704 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 780 (940)
....++.+.. +.. .+++.+.+.++.+++|.. |++|+++.+...+.+++++..+ +++..+...+++++++|
T Consensus 158 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k 230 (259)
T 2v25_A 158 TTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDA----KRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKK 230 (259)
T ss_dssp SHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEET
T ss_pred chHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHc----CCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcC
Confidence 7776664322 221 256778899999999999 8999999999988887777554 55666666778999999
Q ss_pred CCc-chHHHHHHHHhcccccchHHHHHhhc
Q 002301 781 DSP-LAVDISTAILKLSENGDLQRIHDKWL 809 (940)
Q Consensus 781 ~sp-l~~~~~~~il~l~e~G~~~~i~~kw~ 809 (940)
++| +.+.+|++|.++.++ ++++.+||.
T Consensus 231 ~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 231 DDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp TCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 996 999999999999999 899999994
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.71 E-value=4.8e-08 Score=104.77 Aligned_cols=214 Identities=14% Similarity=0.102 Sum_probs=142.7
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec-e
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD-I 546 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~-~ 546 (940)
++|+||+.. .++|+... ..-.++++.+++++|.++++... .+|++++..+.+|++|+++.+ .
T Consensus 4 ~~l~iG~~p--~~~p~~~~-------~~~~~l~~~l~k~lG~~ve~~~~--------~~~~~~i~al~~G~vDi~~~~~~ 66 (310)
T 3n5l_A 4 PVINFGIIS--TESSQNLK-------SIWEPFLKDMSQQTGYQVKAFFA--------PDYAGIIQGMRFDKVDIAWYGNK 66 (310)
T ss_dssp CEEEEEECC--SSCHHHHH-------HHHHHHHHHHHHHHSSEEEEECC--------SSHHHHHHHHHTTSCSEEECCHH
T ss_pred cEEEEEEec--CCCHHHHH-------HHHHHHHHHHHHHhCCCEEEEeC--------CCHHHHHHHHHcCCCCEEEECcH
Confidence 579999984 44554431 11248999999999988554432 469999999999999999744 3
Q ss_pred eeecC--cceeeeecccccc-----ccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCC
Q 002301 547 AIITN--RTKMADFTQPYIE-----SGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRG 619 (940)
Q Consensus 547 ~~t~~--R~~~v~ft~p~~~-----~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 619 (940)
..+.. |.....|..++.. ...++++++.
T Consensus 67 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~d--------------------------------------------- 101 (310)
T 3n5l_A 67 AAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKD--------------------------------------------- 101 (310)
T ss_dssp HHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETT---------------------------------------------
T ss_pred HHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECC---------------------------------------------
Confidence 33332 3333445433210 1234555443
Q ss_pred CCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhh--CCCCe
Q 002301 620 PPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRS--SNYPI 697 (940)
Q Consensus 620 ~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~--~~~~i 697 (940)
.+|++++||++ .++++
T Consensus 102 --------------------------------------------------------------s~i~sl~DL~~~~kgk~i 119 (310)
T 3n5l_A 102 --------------------------------------------------------------SKIDSLEDMLANAKSLTF 119 (310)
T ss_dssp --------------------------------------------------------------CSCCSHHHHHHTGGGCEE
T ss_pred --------------------------------------------------------------CCCCCHHHHhhhcCCCEE
Confidence 57999999932 26778
Q ss_pred EEE-eCchHH----HH-HHhhhCCCc---cCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC----CcEEE
Q 002301 698 GYQ-VNSFAR----NY-LVDELNIDE---SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR----CEFSI 764 (940)
Q Consensus 698 ~~~-~gs~~~----~~-l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~----~~l~~ 764 (940)
++. .|+... .+ +....+... -+.+...+.++.+.+|.. |++|+.+.+...+..+.++. .++.+
T Consensus 120 a~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~~~~~~~~lrv 195 (310)
T 3n5l_A 120 GNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVAN----KQVDVATFNTEGMERLELTQPEKARQLKV 195 (310)
T ss_dssp EECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCHHHHTTEEE
T ss_pred EecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHc----CCccEEEecchhHHHHHHhCccchhCEEE
Confidence 864 344322 21 212233331 123334677789999999 99999999998888887764 35776
Q ss_pred eCCccccCcceeecCCCCc--chHHHHHHHHhcccccchHHHHHhhc
Q 002301 765 VGQVFTKNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDKWL 809 (940)
Q Consensus 765 ~~~~~~~~~~~~~~~k~sp--l~~~~~~~il~l~e~G~~~~i~~kw~ 809 (940)
+........++++++|+.| +++.++.+|.++.++|..+++.++|-
T Consensus 196 l~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 196 IWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQ 242 (310)
T ss_dssp EEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTT
T ss_pred EEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcC
Confidence 6544333457899999955 99999999999999999988877763
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.70 E-value=6e-08 Score=104.28 Aligned_cols=215 Identities=13% Similarity=0.140 Sum_probs=141.4
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee-
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG- 544 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~- 544 (940)
+.++|+||+.. .+.|... ...--+|++.|++++|.++++... .+|++++..|.+|++|+++.
T Consensus 12 ~~~~l~~Gv~p--~~~~~~~-------~~~~~~l~~~L~k~lG~~ve~~~~--------~~~~~~i~aL~~G~vDia~~~ 74 (321)
T 3p7i_A 12 QEKALNFGIIS--TESQQNL-------KPQWTPFLQDMEKKLGVKVNAFFA--------PDYAGIIQGMRFNKVDIAWYG 74 (321)
T ss_dssp --CCEEEEECC--SSCHHHH-------HHHHHHHHHHHHHHHTSCEEEECC--------SSHHHHHHHHHTTSCSEEECC
T ss_pred cCCcEEEEEec--CCCHHHH-------HHHHHHHHHHHHHHHCCCEEEEec--------CCHHHHHHHHHcCCCcEEEEC
Confidence 45789999983 2333221 122247999999999988554432 46999999999999999974
Q ss_pred ceeeecC--cceeeeeccccc-----cccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCC
Q 002301 545 DIAIITN--RTKMADFTQPYI-----ESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEF 617 (940)
Q Consensus 545 ~~~~t~~--R~~~v~ft~p~~-----~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 617 (940)
+.+.+.. |.....|..|+. ....+++|++.
T Consensus 75 ~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~d------------------------------------------- 111 (321)
T 3p7i_A 75 NLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKD------------------------------------------- 111 (321)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETT-------------------------------------------
T ss_pred hHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECC-------------------------------------------
Confidence 4454443 333344543321 01134555433
Q ss_pred CCCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhh--CCC
Q 002301 618 RGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRS--SNY 695 (940)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~--~~~ 695 (940)
.+|++++||++ .++
T Consensus 112 ----------------------------------------------------------------s~i~sl~DL~~~~kgk 127 (321)
T 3p7i_A 112 ----------------------------------------------------------------SPINNLNDLLAKRKDL 127 (321)
T ss_dssp ----------------------------------------------------------------CSCCSHHHHHHTGGGC
T ss_pred ----------------------------------------------------------------CCCCCHHHHHhhcCCC
Confidence 57999999932 266
Q ss_pred CeEEE-eCchH----HHH-HHhhhCCCcc--CcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC----CcEE
Q 002301 696 PIGYQ-VNSFA----RNY-LVDELNIDES--RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR----CEFS 763 (940)
Q Consensus 696 ~i~~~-~gs~~----~~~-l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~----~~l~ 763 (940)
++++. .|+.. ... +....+.... +.+.+.+..+.+.+|.. |++|+.+.+...+..+.++. .++.
T Consensus 128 ~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~----G~vDa~~~~~~~~~~~~~~~p~~~~~lr 203 (321)
T 3p7i_A 128 TFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVAN----KQVDVATNNTENLDKLKTSAPEKLKELK 203 (321)
T ss_dssp EEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHTHHHHCHHHHTTEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHC----CCceEEEechHHHHHHHHhCcchhccEE
Confidence 78763 34322 122 2223333322 22345677889999999 99999999998888777653 3677
Q ss_pred EeCCccccCcceeecCCCCc--chHHHHHHHHhcccccchHHHHHhh
Q 002301 764 IVGQVFTKNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDKW 808 (940)
Q Consensus 764 ~~~~~~~~~~~~~~~~k~sp--l~~~~~~~il~l~e~G~~~~i~~kw 808 (940)
++........++++++|+.| +++.++.+|.++.++|..+++.+++
T Consensus 204 vl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~ 250 (321)
T 3p7i_A 204 VIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL 250 (321)
T ss_dssp EEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred EEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 77654344457899999954 9999999999999999988877765
No 76
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.68 E-value=2.2e-08 Score=99.88 Aligned_cols=182 Identities=12% Similarity=0.073 Sum_probs=132.5
Q ss_pred CcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeecC------cceeeeecccc
Q 002301 489 SEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITN------RTKMADFTQPY 562 (940)
Q Consensus 489 ~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~------R~~~v~ft~p~ 562 (940)
+.+++|+.--|.+.+. |+++++.++. .+++.+..|.+|++|+++.+++.+++ |...++|+.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~~~i~~mr--------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIPFYYAHMR--------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSCEEEEECS--------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCcEEEEEcc--------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 4478888887777773 7775555552 49999999999999999999999999 99999999999
Q ss_pred ccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccccc
Q 002301 563 IESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKE 642 (940)
Q Consensus 563 ~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 642 (940)
+.+...++++++..
T Consensus 96 Yv~~h~li~~~~~~------------------------------------------------------------------ 109 (231)
T 2ozz_A 96 YVGEHQLICRKGES------------------------------------------------------------------ 109 (231)
T ss_dssp SSCCEEEEEETTCG------------------------------------------------------------------
T ss_pred cccCeEEEEeCCCc------------------------------------------------------------------
Confidence 98888888776640
Q ss_pred cccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCccc
Q 002301 643 KTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVP 722 (940)
Q Consensus 643 ~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~ 722 (940)
..| ++||+..||..+..+.+... ....+..
T Consensus 110 ---------------------------------------~~i----------krVGvd~gS~dq~~lt~~~~-~g~~Ve~ 139 (231)
T 2ozz_A 110 ---------------------------------------GNV----------KRVGLDSRSADQKIMTDVFF-GDSDVER 139 (231)
T ss_dssp ---------------------------------------GGC----------CEEEECTTCHHHHHHHHHHH-TTSCCEE
T ss_pred ---------------------------------------ccc----------EEEEecCCChhHHHHHhhhc-CCCeEEE
Confidence 122 57999999988888865433 4445556
Q ss_pred C-CCHHHHHHHhhcCCCCCceEEEEe--chhhHHHHHhcCCcEEEe--CC---ccccCcceeecCCCCc-chHHHHHHHH
Q 002301 723 L-NSPEEYAKALKDGPHKGGVAAVVD--DRAYAELFLSTRCEFSIV--GQ---VFTKNGWGFAFPRDSP-LAVDISTAIL 793 (940)
Q Consensus 723 ~-~~~~~~~~~l~~~~~~g~~~a~~~--~~~~~~~~~~~~~~l~~~--~~---~~~~~~~~~~~~k~sp-l~~~~~~~il 793 (940)
+ .+..+++.+|.+ |.+||++. +.+... ++.++... .. ......-.++++||.+ +.+.+|+.|
T Consensus 140 ve~~y~~~i~~L~~----G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I- 210 (231)
T 2ozz_A 140 VDLSYHESLQRIVK----GDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVV- 210 (231)
T ss_dssp EECCHHHHHHHHHH----TSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHC-
T ss_pred EECCHHHHHHHHHc----CCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCHHHHHHHHHHh-
Confidence 7 789999999999 99999999 666655 22233322 22 2234455688999975 888888776
Q ss_pred hcccccchHHHHHhhc
Q 002301 794 KLSENGDLQRIHDKWL 809 (940)
Q Consensus 794 ~l~e~G~~~~i~~kw~ 809 (940)
+...+-.++++-.
T Consensus 211 ---~~~~v~~~Q~~V~ 223 (231)
T 2ozz_A 211 ---DKHALLAHQQRVV 223 (231)
T ss_dssp ---CHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 3334445554443
No 77
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.32 E-value=4.5e-05 Score=81.82 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=131.4
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchhHH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSH 110 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~a~ 110 (940)
++||++.|....+......+++.++++. |+++.+.. .+..++....+....++.+++.+||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 5799999875334455677888777764 56665432 23567777777778888889988874 44444333
Q ss_pred HHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEc--CCcchhhHHHHHH
Q 002301 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVD--DDHGRNGIAALGD 186 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~--~w~~v~ii~~d--~~~g~~~~~~l~~ 186 (940)
.....+...++|+|.+....+. .+.+..+..++...+..+++++... |.++|++|..+ ........+.|++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 3345566789999987553321 1233446677777888888887776 99999999865 3345667889999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
.+++.|+++....... .+.++....+.++.+. ++++|+. .+...+..+++++++.|.
T Consensus 148 ~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~ 206 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE--EDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK 206 (313)
T ss_dssp HHTTSSCEEEEEEECS--SCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC
T ss_pred HhcCCCCEEEEeecCC--CCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC
Confidence 9999998876432222 3344444555555433 4566554 345577789999999994
No 78
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.23 E-value=5.4e-05 Score=79.41 Aligned_cols=199 Identities=10% Similarity=-0.031 Sum_probs=135.6
Q ss_pred EEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcC-cEEEEcCC-Cchh
Q 002301 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQ-TVAIIGPQ-DAVT 108 (940)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~-~s~~ 108 (940)
++||++.|.. ..+-.....+++.+.++. |+++.+...++..++....+....++.++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 4799999854 444456677888777774 67777666567778888788888888888 99887544 3334
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHc----CCeEEEEEEEcC--CcchhhHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY----GWREVIAIYVDD--DHGRNGIA 182 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~----~w~~v~ii~~d~--~~g~~~~~ 182 (940)
.......+...++|+|.+....+. . +.+..+..++...+..+++++... |-++++++..+. .......+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLAG---D--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS---S--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC---C--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 445556677889999987543321 1 223445678888888899988777 899999998543 34556788
Q ss_pred HHHHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 183 ALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 183 ~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
.+.+.+++. |+++... .....+.++....+.++... ++++|+. .+...+..+++++++.|+
T Consensus 148 gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAA--PYAGDDRGAARSEMLRLLKETPTIDGLFT-PNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHTTCTTEEEEEC--CBCCSSHHHHHHHHHHHHHHCSCCCEEEC-CSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCceEEEE-CCchhhhHHHHHHHHcCC
Confidence 999999988 8887632 22223444444555554433 4555543 334566778999999997
No 79
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.21 E-value=3.2e-05 Score=82.13 Aligned_cols=205 Identities=11% Similarity=0.006 Sum_probs=131.6
Q ss_pred ceEEEEEEeec---CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 30 SVVNIGALLSF---STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 30 ~~i~IG~l~~~---~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
...+||+++|. +..+......+++.+.++. |+++. +.++..++....+....++.++|.+||.....
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEEE--EECCTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 46789999986 3445556677888777762 55554 45666777776777777888899988864332
Q ss_pred hhHHHHHHhhcc-CCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHH
Q 002301 107 VTSHVVSHVANE-LQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (940)
Q Consensus 107 ~~a~~va~~~~~-~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (940)
.....+ ..+.. .++|+|.+....+ + +.+..+..++...+..+++++...|.+++++|..+.. .+....+.
T Consensus 88 ~~~~~~-~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~g 160 (296)
T 3brq_A 88 LSVDEI-DDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAG 160 (296)
T ss_dssp SCHHHH-HHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHH
T ss_pred CChHHH-HHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHH
Confidence 222333 33455 7999998754322 1 2234556677777788888887789999999986533 45667888
Q ss_pred HHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
|.+.+++.|+.+.....+....+..+-...+.++.+ .++++|+.. +...+..+++++++.|+..|+-+
T Consensus 161 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di 230 (296)
T 3brq_A 161 YKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS-NDDMAIGAMKALHERGVAVPEQV 230 (296)
T ss_dssp HHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEES-SHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEEC-ChHHHHHHHHHHHHcCCCCCCce
Confidence 999999998765422112212233444455555543 356776644 44557788999999998755433
No 80
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.17 E-value=2e-05 Score=83.50 Aligned_cols=204 Identities=7% Similarity=-0.088 Sum_probs=127.4
Q ss_pred CceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 29 ~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
....+||++.|.+..+......+++.+.++. |+++.+ .++..++....+....++.++|.+||.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKH--------HLHVAV--ASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGG--------TCEEEE--EECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 3467899999873223334455666555542 566554 466667776666777788889999886443322
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CcchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD--DHGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 186 (940)
...+..+ .++|+|.+....+. +.+..+..++...+..+++++...|-++|++|.... .......+.|.+
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2222233 78999987543321 234456677778888888988888999999998653 345567888999
Q ss_pred HHhcCceeEEEeecC--CCCC----ChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 187 TLAAKRCRISFKAPL--SVEA----TEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~--~~~~----~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
.+++.|+.+.....+ .... +..+-...+.++.+.++++|+.. +...+..+++++++.|+..|+-+
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di 217 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVAT-NHLLLLGALQAIKESEKEIKKDV 217 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEEC-SHHHHHHHHHHHHHSSCCBTTTB
T ss_pred HHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEEC-CcHHHHHHHHHHHHhCCCCCCce
Confidence 999998765321111 1111 22222333444333378877654 34567788999999998755433
No 81
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.16 E-value=0.00018 Score=76.48 Aligned_cols=202 Identities=10% Similarity=-0.039 Sum_probs=128.7
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cCCCch
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAV 107 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~ 107 (940)
+..+||++.|.. ..+......+++.+.++. |+++.+ ..++..++....+....++.+++.+|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 367899999864 344456677888887774 455443 234667887777777888888999876 455444
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHH-cCCe-EEEEEEEcC--CcchhhHHH
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-YGWR-EVIAIYVDD--DHGRNGIAA 183 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~-~~w~-~v~ii~~d~--~~g~~~~~~ 183 (940)
........+...++|+|.+.... ... +.+..+..++...+..+++++.. .|.+ +++++..+. .......+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 43344455667899999875431 111 33455667777778888888766 8887 999887543 234566788
Q ss_pred HHHHHhcCc--eeEEEeecCCCCCChhHHHHHHHHHhcCC--CeEEEEEecCCcHHHHHHHHHHcCCC
Q 002301 184 LGDTLAAKR--CRISFKAPLSVEATEDEITDLLVKVALTE--SRIIVVHTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 184 l~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viv~~~~~~~~~~~l~~a~~~g~~ 247 (940)
|++.+++.+ +++... .+....+.++....+.++.... +++|+. .+...+..+++++++.|+.
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~ 214 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK 214 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC
Confidence 999998764 444321 1121233444455556654443 444433 3446777889999999975
No 82
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.15 E-value=7.1e-05 Score=79.15 Aligned_cols=205 Identities=9% Similarity=-0.007 Sum_probs=129.0
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
...+||++.|.. ..+......+++.+.++. |+++.+ .++..++....+....++.+++.+||.......
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 356899999853 344445677788777763 566554 466677777666777788888988875322221
Q ss_pred HHHHHHhhcc-CCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc--CCcchhhHHHHH
Q 002301 109 SHVVSHVANE-LQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD--DDHGRNGIAALG 185 (940)
Q Consensus 109 a~~va~~~~~-~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~ 185 (940)
. .+.+.+.. .++|+|.+....+. . ++...+..++...+..+++++...|.++|++|..+ ........+.+.
T Consensus 76 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~ 149 (289)
T 1dbq_A 76 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 149 (289)
T ss_dssp H-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHH
T ss_pred H-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHH
Confidence 1 22333333 79999987653321 1 22335567777778888898888899999999754 335667788999
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCe
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~ 251 (940)
+.+++.|+.+.....+....+..+....+.++.+ .++++|+.. +...+..+++++++.|+..++-
T Consensus 150 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~~vP~d 216 (289)
T 1dbq_A 150 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG-GDIMAMGALCAADEMGLRVPQD 216 (289)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES-CHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEEC-CcHHHHHHHHHHHHcCCCCCCc
Confidence 9999998765322122211233444455555543 356776654 3456778899999999875543
No 83
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.12 E-value=0.00013 Score=77.16 Aligned_cols=201 Identities=7% Similarity=-0.008 Sum_probs=129.9
Q ss_pred eEEEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCC-c
Q 002301 31 VVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD-A 106 (940)
Q Consensus 31 ~i~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~-s 106 (940)
..+||++.|.. ..+......+++.++++. |+++.+...|+..++....+....++.++|.+||.... .
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 45799999853 334445667777777764 56766654454677777777777888889998876333 3
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHc-C-CeEEEEEEEcCC--cchhhHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY-G-WREVIAIYVDDD--HGRNGIA 182 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~-~-w~~v~ii~~d~~--~g~~~~~ 182 (940)
.........+...++|+|.+....+. .+.+..+.+++...+..+++++... | -+++++|..+.. ......+
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~ 151 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREE 151 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHH
Confidence 32223345566689999987543321 1234566778888888888887664 6 999999986433 4556788
Q ss_pred HHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCC
Q 002301 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~ 247 (940)
.|.+.+++.|..+... +....+.++....+.++... ++++|+. .+...+..+++++++.|+.
T Consensus 152 gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 152 GLKIGLSDDSNKIEAI--YYCDSNYDKAYDGTVELLTKYPDISVMVG-LNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHGGGGGGEEEE--EECTTCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhCCCcEEee--ecCCCCHHHHHHHHHHHHHhCCCceEEEE-CCCcchHHHHHHHHhcCCC
Confidence 8999999988764332 11112344444455554433 3555543 3345677889999999986
No 84
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.10 E-value=7.1e-05 Score=79.56 Aligned_cols=205 Identities=9% Similarity=-0.020 Sum_probs=138.2
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cCCCchh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAVT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~ 108 (940)
.++||++.|.. ..+-.....+++.+.++. |+++.+...++..++..-.+....++.+++.+|| .|.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 46899999875 444456678888888774 5666654333325788777788888888998776 5555554
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcC--CeEEEEEEEcCC--cchhhHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG--WREVIAIYVDDD--HGRNGIAAL 184 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~--w~~v~ii~~d~~--~g~~~~~~l 184 (940)
.......+...++|+|.+....+.. ...+.+..+..++...+..+++++...| -++++++..+.. ......+.|
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 4555566777899999876544321 1123455667788888888999888888 899999975533 344668899
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCC
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGT 249 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~ 249 (940)
++.+++.|+++.... .. ...+.....+.++... ++++|+. .+...+..+++++++.|+..|
T Consensus 153 ~~~l~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 153 KTILQDKGIFFEELD-VG--TDPNQVQSRVKSYFKIHPETNIIFC-LTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHTTCEEEEEE-CC--SCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHhcCCeEEEee-cC--CChHHHHHHHHHHHHhCCCCCEEEE-cCCcchHHHHHHHHhcCCccC
Confidence 999999999887654 11 3344445555554332 4555543 444566778888888887544
No 85
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.07 E-value=0.00032 Score=75.24 Aligned_cols=204 Identities=10% Similarity=0.017 Sum_probs=127.7
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEe-cCCCCHHHHHHHHHHHHhcCcEEEE-cCCCchhH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQ-DCNHSGFLALAEALHLMEGQTVAII-GPQDAVTS 109 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~-D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~a 109 (940)
+||++.|.. ..+......+++.++++. |+++ .+. ++..++..-.+....++.++|.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~~--~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GIDV--TYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCEE--EECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCEE--EEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 699999864 334445667788777775 3444 344 4677888877888889989998865 56655544
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHH---cCCeEEEEEEEc--CCcchhhHHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH---YGWREVIAIYVD--DDHGRNGIAAL 184 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~---~~w~~v~ii~~d--~~~g~~~~~~l 184 (940)
..+...+...+||+|.+....+ ... +..+....++...+..+++++.. .|-+++++|... +.......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~~-~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PEC-RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GGG-CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CCC-ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 4455667778999998754221 111 12232256666677778887655 578999999854 33345667888
Q ss_pred HHHHhcC--ceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 185 GDTLAAK--RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 185 ~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
.+.+++. ++++.....-. .+.++....+.++... ++++|+. .+...+..+++++++.| . .....++
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG 220 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY--NDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVG 220 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEE
T ss_pred HHHHHhhCCCcEEEEeccCC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEE
Confidence 8888765 56665432212 2344444455554433 3555443 44566778899999988 5 3333343
No 86
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.05 E-value=0.00032 Score=75.75 Aligned_cols=204 Identities=8% Similarity=-0.028 Sum_probs=130.5
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcC--cEEEEcCCCch
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQ--TVAIIGPQDAV 107 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~--v~aiiGp~~s~ 107 (940)
..+||++.|.. ..+-.....+++.+.++. |+++. +.++..++....+....++.++ |.+||......
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~ 74 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPYV--PLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDS 74 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCEE--EEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEEE--EecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH
Confidence 56799999853 333345566777666663 45544 4466677777666777788888 99988644333
Q ss_pred -hHHHHHHhhccCCccEEeeecCCCCCCCCCC--CceEEecCChHHHHHHHHHHHHH--cCCeEEEEEEEcC--Ccchhh
Q 002301 108 -TSHVVSHVANELQVPLLSFSATDPTLSSLQF--PYFVRTTQSDQYQMAAIAEIVDH--YGWREVIAIYVDD--DHGRNG 180 (940)
Q Consensus 108 -~a~~va~~~~~~~vP~Is~~at~~~ls~~~~--p~~~r~~psd~~~~~ai~~~l~~--~~w~~v~ii~~d~--~~g~~~ 180 (940)
........+...++|+|.+....+......+ +.+..+..++...+..+++++.. .|.++|++|.... ......
T Consensus 75 ~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R 154 (332)
T 2rjo_A 75 ADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIER 154 (332)
T ss_dssp HHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHH
Confidence 2223344556679999987554332111111 34566778888888888888766 6999999998643 345667
Q ss_pred HHHHHHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhcC---CCeEEEEEecCCcHHHHHHHHHHcCCC
Q 002301 181 IAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT---ESRIIVVHTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 181 ~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viv~~~~~~~~~~~l~~a~~~g~~ 247 (940)
.+.|.+.+++. |+++.....-. .+.++....+.++.+. ++++|+. .+...+..+++++++.|+.
T Consensus 155 ~~Gf~~al~~~pgi~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 155 KAGLDAALKKFPGIQLLDFQVAD--WNSQKAFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHhCCCcEEEeeccCC--CCHHHHHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHHcCCC
Confidence 88899999999 98875432111 2334444445554333 4555543 3345677899999999975
No 87
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.02 E-value=0.00013 Score=77.67 Aligned_cols=186 Identities=10% Similarity=0.132 Sum_probs=121.3
Q ss_pred ceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhH
Q 002301 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (940)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a 109 (940)
++.+||++.+.+..+-.....|++-+ +++.|.+ .|.++.+.+.|+..++.........+.+++|++||..... ..
T Consensus 7 ~t~~IGvi~~~~~p~~~~~~~gi~~~---l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~-~~ 81 (302)
T 2qh8_A 7 KTAKVAVSQIVEHPALDATRQGLLDG---LKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP-TA 81 (302)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHH---HHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH-HH
T ss_pred CCcEEEEEEeccChhHHHHHHHHHHH---HHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH-HH
Confidence 57899998444433323344555444 4445444 4779999999999999998888888888899999875432 22
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCC------CCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-cchhh
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSS------LQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDD-HGRNG 180 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~------~~~p~~~r~~psd~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~ 180 (940)
..+.. ...++|+|..+..++.... ...+.+..+.-. ..+...++++... |.+++++|+...+ .+...
T Consensus 82 ~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~--~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r 157 (302)
T 2qh8_A 82 QALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDL--SPVEQHVELIKEILPNVKSIGVVYNPGEANAVSL 157 (302)
T ss_dssp HHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECC--CCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHH
T ss_pred HHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEECC--cCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHH
Confidence 33333 2679999987765543211 112344443321 1244556777676 9999999996543 35667
Q ss_pred HHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe
Q 002301 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT 229 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~ 229 (940)
.+.+++++++.|+++...... +.++....++++.. ++++|+...
T Consensus 158 ~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~ 201 (302)
T 2qh8_A 158 MELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAE-KSDVIYALI 201 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHGG-GCSEEEECS
T ss_pred HHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHhc-cCCEEEECC
Confidence 889999999999987654322 23566677777764 688877653
No 88
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.00028 Score=76.04 Aligned_cols=200 Identities=8% Similarity=0.019 Sum_probs=123.9
Q ss_pred ceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh-
Q 002301 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT- 108 (940)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~- 108 (940)
...+||++.|.+..+-.....+++.+.++ . .|+++. +.++..++.........++.++|.+||....+..
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~----~g~~l~--i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMF---Y----NGVSVE--IRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTT---S----SSCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHH---c----CCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 35789999987322222334445544432 1 155554 4566677777777777788889998886444332
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC--cchhhHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDD--HGRNGIAAL 184 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~--~w~~v~ii~~d~~--~g~~~~~~l 184 (940)
.......+...++|+|.+....+. . +.+..+.+++...+..+++++... |.+++++|..+.. ......+.|
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKILS---D--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCSS---S--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCC---c--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 223334556679999987543221 1 233455677777788888887664 9999999986533 345667889
Q ss_pred HHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 185 GDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 185 ~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
.+.+++. |+++.... ....+.++-...+.++.. .++++|+ +.+...+..+++++++.|+
T Consensus 151 ~~al~~~pg~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKA--DAAWERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp HHHHHTCTEEEEEEEE--ECTTSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCEEEeee--cCCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC
Confidence 9999998 88765321 111233333344444432 3467665 3445567788999999996
No 89
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=97.99 E-value=0.00022 Score=75.19 Aligned_cols=202 Identities=10% Similarity=-0.002 Sum_probs=127.2
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
...+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.++|.+||.......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALSE 76 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356899999853 33344556676666665 2566654 455567666566666777789998886443322
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
...+.. +. .++|+|.+....+ + +.+..+..++...+..+++++...|-++|++|..... ......+.|.+
T Consensus 77 ~~~~~~-l~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 77 LPELQN-II-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHHHH-HH-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHH-Hh-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 233333 44 8999998754322 1 1233455677777788888887789999999986543 34566788999
Q ss_pred HHhcCceeEE-EeecCCCCCChhHHHHHHHH--HhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 187 TLAAKRCRIS-FKAPLSVEATEDEITDLLVK--VALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 187 ~l~~~g~~v~-~~~~~~~~~~~~~~~~~l~~--l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
.+++.|+.+. ....+ +.++-...+.+ +.+. ++++|+. .+...+..+++++++.|+..|+-+-+
T Consensus 149 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~v 216 (285)
T 3c3k_A 149 RLKFHGLDYSRISYAE----NLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQDVAV 216 (285)
T ss_dssp HHHHHTCCCCEEEECS----SSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCceEeecCC----ChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999887653 11112 22233344455 4333 5677654 33456778899999999876544433
No 90
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.99 E-value=0.00022 Score=75.82 Aligned_cols=213 Identities=10% Similarity=0.019 Sum_probs=131.1
Q ss_pred CceEEEEEEeecC--CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEe-cCCCCHHHHHHHHHHHHhcCcEEEEc-CC
Q 002301 29 PSVVNIGALLSFS--TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQ-DCNHSGFLALAEALHLMEGQTVAIIG-PQ 104 (940)
Q Consensus 29 ~~~i~IG~l~~~~--~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~-D~~~~~~~a~~~a~~li~~~v~aiiG-p~ 104 (940)
....+||+++|.. ..+-.....+++.+.++. +|+.+.+... ++..++..-.+....++.+++.+||- |.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3568899999874 344445567777777663 1466666554 44567766666677788889988874 44
Q ss_pred CchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCC--eEEEEEEEc------CCc
Q 002301 105 DAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGW--REVIAIYVD------DDH 176 (940)
Q Consensus 105 ~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w--~~v~ii~~d------~~~ 176 (940)
...........+...++|+|.+....+.. +.+-.+..++...+..+++++...|. +++++|..+ ...
T Consensus 79 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 79 VPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp SGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 44333444455667799999875433221 12345667788888888899888887 999999843 223
Q ss_pred chhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHH-hc-CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 177 GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-AL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 177 g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l-~~-~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
.....+.|.+.+++.|..+..........+.+.-...+.++ +. .++++|+...+ . +..+++++++.|+ .+...+
T Consensus 154 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~-a~g~~~al~~~g~--~di~vi 229 (304)
T 3gbv_A 154 QESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNS-K-VYIIGEYLQQRRK--SDFSLI 229 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSS-C-THHHHHHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCc-c-hHHHHHHHHHcCC--CCcEEE
Confidence 45678899999998875432221111001111112223332 22 35777665554 3 7789999999997 344444
Q ss_pred ecC
Q 002301 255 ATS 257 (940)
Q Consensus 255 ~~~ 257 (940)
+.|
T Consensus 230 g~d 232 (304)
T 3gbv_A 230 GYD 232 (304)
T ss_dssp EES
T ss_pred EeC
Confidence 433
No 91
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=97.98 E-value=0.00018 Score=76.03 Aligned_cols=199 Identities=15% Similarity=0.004 Sum_probs=131.2
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cCCCchh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAVT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~ 108 (940)
.-+||++.|.. ..+......+++.+.++. |+++.+ .++..++..-......++.+++.+|| .|..+..
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 74 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTAIA--LDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDV 74 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEE--EcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 46799999964 333345567777777663 555544 46667777777777778888999887 5555555
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHH--cCCeEEEEEEEcCC--cchhhHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH--YGWREVIAIYVDDD--HGRNGIAAL 184 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~--~~w~~v~ii~~d~~--~g~~~~~~l 184 (940)
.......+...++|+|.+....+ +.+..+..++...+..+++++.. .|-++++++..+.. ......+.+
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf 147 (291)
T 3l49_A 75 LNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQM 147 (291)
T ss_dssp HHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHH
Confidence 55566677788999998754332 12345667777778888888877 89999999975433 334557889
Q ss_pred HHHHhcC-ceeEEEeecCCCC-CChhHHHHHHHHHhcC-----CCeEEEEEecCCcHHHHHHHHHHcCCC
Q 002301 185 GDTLAAK-RCRISFKAPLSVE-ATEDEITDLLVKVALT-----ESRIIVVHTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 185 ~~~l~~~-g~~v~~~~~~~~~-~~~~~~~~~l~~l~~~-----~~~viv~~~~~~~~~~~l~~a~~~g~~ 247 (940)
++.+++. |+++.....+... .+.+.....+.++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 148 KYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC
Confidence 9999998 6775433323221 1223333444444332 467764 34455677889999999975
No 92
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=97.97 E-value=0.00038 Score=73.48 Aligned_cols=197 Identities=11% Similarity=0.017 Sum_probs=124.9
Q ss_pred EEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCC-chhH
Q 002301 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD-AVTS 109 (940)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~-s~~a 109 (940)
.+||++.|.. ..+......+++.++++. |+++. +.++..++....+....++.++|.+||.... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEAT--IFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999863 444455667777777762 55554 4566777777777777888889998886333 3322
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEE-ecCChHHHHHHHHHHHHHc------CCeE--EEEEEEcC--Ccch
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVR-TTQSDQYQMAAIAEIVDHY------GWRE--VIAIYVDD--DHGR 178 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r-~~psd~~~~~ai~~~l~~~------~w~~--v~ii~~d~--~~g~ 178 (940)
......+...++|+|.+....+. . +.+.. +..++...+..+++++... |.++ ++++.... ....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 23334456689999987543321 1 12223 6677777788888887666 8899 66666432 2455
Q ss_pred hhHHHHHHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 179 NGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 179 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
...+.|++.+++. |+++.....-. .+.++-...++++.+ .++++|+. .+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQSAE--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 6788899999998 88765322111 233333344444432 35677664 344567788999999997
No 93
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=97.96 E-value=0.00038 Score=74.23 Aligned_cols=204 Identities=10% Similarity=0.033 Sum_probs=127.6
Q ss_pred EEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCC-CchhH
Q 002301 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQ-DAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~-~s~~a 109 (940)
-+||++.|.. ..+......+++.+.++. |+ +++.+.++..++....+....++.+++.+||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--------PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--------TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--------CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 4799999853 333334456666555542 44 2345567777777767777778888999887533 33323
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHH------------cCCeEEEEEEEcC--C
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH------------YGWREVIAIYVDD--D 175 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~------------~~w~~v~ii~~d~--~ 175 (940)
......+...++|+|.+....+...-..++.+..+..++...+..+++++.. .|-++|++|.... .
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3444556678999998754321100012345667778888888888888766 6888999998643 3
Q ss_pred cchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC----CCeEEEEEecCCcHHHHHHHHHHcC
Q 002301 176 HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT----ESRIIVVHTHYNRGPVVFHVAQYLG 245 (940)
Q Consensus 176 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~----~~~viv~~~~~~~~~~~l~~a~~~g 245 (940)
......+.|.+.+++.|+.+.....+....+..+-...++++... ++++|+. ++...+..++++++++|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 455678889999999987654322222112334444455555433 4666654 33456778899999888
No 94
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.95 E-value=0.00015 Score=77.19 Aligned_cols=205 Identities=7% Similarity=-0.073 Sum_probs=130.5
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cCCCch
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAV 107 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~ 107 (940)
...+||+++|.. ..+-.....+++.+.++. |+++.+...+...++....+....++.+++.+|| .|....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467899999864 333345566777776664 5666654444333777777788888888888877 444443
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcC-----CeEEEEEEEcC--Ccchhh
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG-----WREVIAIYVDD--DHGRNG 180 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~-----w~~v~ii~~d~--~~g~~~ 180 (940)
........+. .++|+|.+....+.......+.+..+.+++...+..+++++...| -++++++.... ......
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2222234455 899999874433211111224566777888888888889988888 89999997543 344566
Q ss_pred HHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHH-hcCCCeEEEEEecCCcHHHHHHHHHHcCCC
Q 002301 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-ALTESRIIVVHTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l-~~~~~~viv~~~~~~~~~~~l~~a~~~g~~ 247 (940)
.+.|++.+++.|+++.... ....+.+.....+.++ +..++++ | +++...+..+++++++.|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 8999999999998876543 2222333333333333 2346777 4 44556777889999998875
No 95
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.95 E-value=0.00038 Score=73.65 Aligned_cols=206 Identities=12% Similarity=0.034 Sum_probs=129.5
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
..-+||++.|.. ..+-.....+++.+.++. |+++.+ .++..++....+....++.++|.+||-......
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 88 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQR--------GYQLLI--ACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPP 88 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSSCT
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--------CCEEEE--EcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 456899999853 333334556666666652 566554 456667766666667777888998875333222
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
...+...+...++|+|.+....+ + +.+..+..++...+..+++++...|.++|++|..... ......+.|.+
T Consensus 89 ~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 162 (293)
T 2iks_A 89 EHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRT 162 (293)
T ss_dssp TCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHH
Confidence 22233456678999998754322 1 2234466777777888888888889999999987533 34566888999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
.+++.|++..... ....+.++-...+.++.+. +++.|+.. +...+..+++++++.|+..|+-+-+
T Consensus 163 ~l~~~g~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di~v 229 (293)
T 2iks_A 163 AWKDDPREVHFLY--ANSYEREAAAQLFEKWLETHPMPQALFTT-SFALLQGVMDVTLRRDGKLPSDLAI 229 (293)
T ss_dssp HHTTCCCCEEEEE--ESSSCHHHHHHHHHHHTTTSCCCSEEEES-SHHHHHHHHHHHHHHHSSCCSSCEE
T ss_pred HHHHcCCCccEEE--cCCCChhhHHHHHHHHHhcCCCCCEEEEC-ChHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999987433221 1112334444555555443 46665543 3455778899999999875543333
No 96
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=97.94 E-value=0.00019 Score=76.32 Aligned_cols=189 Identities=10% Similarity=0.149 Sum_probs=124.0
Q ss_pred CCceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCch
Q 002301 28 RPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (940)
Q Consensus 28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (940)
..+++|||++.-.....-...+.|++-+ +++.|.. .|.++++.++|.++|.......+.+|+.+++++|++-. +.
T Consensus 5 ~~~~~~igi~q~~~hp~ld~~~~G~~~~---L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~-t~ 79 (302)
T 3lkv_A 5 MAKTAKVAVSQIVEHPALDATRQGLLDG---LKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA-TP 79 (302)
T ss_dssp --CCEEEEEEESCCCHHHHHHHHHHHHH---HHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEES-HH
T ss_pred hcCCceEEEEEeecChhHHHHHHHHHHH---HHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcC-CH
Confidence 3468999988655432223445666544 4445544 58899999999999999999999999999999998733 34
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCC----CCC--CceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCc-ch
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSS----LQF--PYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDDH-GR 178 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~----~~~--p~~~r~~psd~~~~~ai~~~l~~~--~w~~v~ii~~d~~~-g~ 178 (940)
.+.+++. ...++|+|-.+.++|.-.. ... +++.-+.-.. -....+++++.+ +-++|++||...+- ..
T Consensus 80 aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~~--~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 80 TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLS--PVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCC--CHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECCc--CHHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 4444443 3457999987777775432 111 3444433211 123344555553 68999999976543 34
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~ 230 (940)
...+.+++.+++.|+++...... ...++...++.+. .+.+++++..+
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~~~~l~-~~~d~i~~~~d 202 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIA-EKSDVIYALID 202 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHH-TTCSEEEECSC
T ss_pred HHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHhcc-CCeeEEEEeCC
Confidence 55778888999999988754322 4456667777665 45788777654
No 97
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.93 E-value=4.5e-05 Score=80.05 Aligned_cols=203 Identities=12% Similarity=0.007 Sum_probs=116.1
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHHH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHV 111 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~~ 111 (940)
+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++....+....++.+++.+||........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ--------RYDLAL--FPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG--------TCEEEE--CCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 388998853 333334455555555442 455544 4554444433444556667788887753322222 2
Q ss_pred HHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-C-----cch-hhHHHH
Q 002301 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD-D-----HGR-NGIAAL 184 (940)
Q Consensus 112 va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~-~-----~g~-~~~~~l 184 (940)
....+...++|+|.+....+ + +..+..++...+..+++++...|-+++++|..+. . ... ...+.|
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 33455678999998754322 1 3456677777788888988888999999998654 2 456 678899
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
.+.+++.|+.+.....+....+..+-...+.++.+. ++++|+ +++...+..+++++++.|+..|+-+.+.
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred HHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 999999987643111111112333444455555443 466665 4445567789999999998765544443
No 98
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.91 E-value=0.00035 Score=73.11 Aligned_cols=205 Identities=9% Similarity=0.022 Sum_probs=126.6
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 108 (940)
.-+||++.|.. ..+-.....+++.+.++. |+++.+ .++..++....+....++.++|.+||- |....
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~- 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--------GYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS- 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--------SCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--------CCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 34799999853 333334556666666652 555544 355566666666667777788887653 32222
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
.. ....+...++|+|.+....+ + +.+..+..++...+..+++++...|.+++++|..+.. ......+.|.+
T Consensus 72 ~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 72 QR-THQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp HH-HHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred HH-HHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 22 23345567999998754322 1 2334566777777888888888889999999986543 34566888999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
.+++.|+.+.....+....+..+....+.++... ++++|+.. +...+..+++++++.|+..|+-+.+
T Consensus 145 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di~v 213 (275)
T 3d8u_A 145 AMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCS-HEEIAIGALFECHRRVLKVPTDIAI 213 (275)
T ss_dssp HHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEES-SHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEEc-CcHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999987543221222122334444455554433 46766543 3456778899999999876544333
No 99
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.91 E-value=0.00011 Score=77.85 Aligned_cols=203 Identities=15% Similarity=0.052 Sum_probs=116.8
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
...+||++.|.. ..+-.....+++.+.++ .|+++.+. +++..++....+....++.++|.+||.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 77 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHK--------NGYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIALT 77 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHT--------TTCEEEEE-C----------CHHHHHHSSCCSEEEEESCC--
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC
Confidence 356799999853 33334455666666554 25666543 155555555455566677778888875333222
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc--CCcchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD--DDHGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~ 186 (940)
...+ ..+...++|+|......+. + +..+..++...+..+++++...|-+++++|..+ ........+.|.+
T Consensus 78 ~~~~-~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (290)
T 3clk_A 78 DDNL-QLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKK 149 (290)
T ss_dssp --CH-HHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHH
T ss_pred HHHH-HHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 2223 3455689999987543221 2 344567777778888898888899999999854 3455677889999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHh-cCCCeEEEEEecCCcHHHHHHHHHHcCCCCCC
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVA-LTESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 250 (940)
.+++.|+.+.....+....+..+-...+.++. ..++++|+.. +...+..+++++++.|+..|+
T Consensus 150 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 150 ALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIAA-SDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEES-SHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEEC-CcHHHHHHHHHHHHcCCCCCC
Confidence 99999876531111121123333444555554 3456776543 345677889999999987554
No 100
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.91 E-value=0.00084 Score=71.38 Aligned_cols=211 Identities=12% Similarity=0.002 Sum_probs=133.1
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 108 (940)
.-+||++.+.. ..+-.....+++.+.++. |+++.+. .++..++..-.+....++.+++.+||- |.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 34788888765 333445667777777774 5666543 466778877777778888889988774 444433
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-cchhhHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDD-HGRNGIAALG 185 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~~~~l~ 185 (940)
.......+...++|+|.+....+. . +.+..+.+++...+..+++++... |-++++++..... ......+.|+
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 334445566789999987554321 1 123445678888888888888777 9999999985432 3345577899
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecC
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATS 257 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~ 257 (940)
+.+++.|..+.....+....+.......+.++... ++++|+ +.+...+..++++++++|+. .+...++.|
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 99988765443322222223344444445554333 345443 34445677899999999986 444444443
No 101
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.89 E-value=0.00031 Score=74.25 Aligned_cols=205 Identities=10% Similarity=0.019 Sum_probs=128.6
Q ss_pred CceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCch
Q 002301 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (940)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (940)
....+||+++|.. ..+-.....+++.+.++ .|+++.+ .++..++....+....++.++|.+||-.....
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 83 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI 83 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4467899999853 33334456666666665 2566654 45666776666667777788999887533222
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-C--cchhhHHHH
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD-D--HGRNGIAAL 184 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~-~--~g~~~~~~l 184 (940)
....+ ..+...++|+|.+....+ + +.+..+..++..-+..+++++...|.+++++|.... + ......+.|
T Consensus 84 ~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 156 (289)
T 2fep_A 84 TDEHV-AEFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGY 156 (289)
T ss_dssp CHHHH-HHHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHH
T ss_pred CHHHH-HHHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHH
Confidence 22233 334567999998754322 1 123345677777788888888888999999998654 2 345668899
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCe
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~ 251 (940)
.+.+++.|+.+.....+....+.++-...++++.+. ++++|+. .+...+..+++++++.|+..|+-
T Consensus 157 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~d 224 (289)
T 2fep_A 157 KRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPED 224 (289)
T ss_dssp HHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCC
Confidence 999999987643211111112334444555555443 4666654 34456778899999999875543
No 102
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.88 E-value=0.00026 Score=76.50 Aligned_cols=207 Identities=8% Similarity=0.005 Sum_probs=128.3
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
...+||++.|.. ..+......+++.+.++ .|+++.+ .++..++.........++.++|.+||.......
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356899999853 33334556677666665 2566654 455667766666666777789998875332222
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
...+. .+...++|+|.+....+ + +.+..+..++..-+..+++++...|.+++++|..+.. ......+.|.+
T Consensus 132 ~~~~~-~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 132 EKIRT-SLKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHHHH-HHHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHHH-HHHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 22333 34467999998754322 1 1223455677777788888888889999999986532 34566788999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
++++.|+.+.....+....+.++-...+.++.+.++++|+.. +...+..+++++++.|+..|+-+-+
T Consensus 205 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~~-~d~~A~g~~~al~~~G~~vP~disv 271 (332)
T 2o20_A 205 ALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVVS-HDTVAVGLLSAMMDKGVKVPEDFEI 271 (332)
T ss_dssp HHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEES-CHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEEC-ChHHHHHHHHHHHHcCCCCccCEEE
Confidence 999999765321111211223333334444332378887654 3456778999999999876554433
No 103
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.88 E-value=0.00036 Score=74.43 Aligned_cols=205 Identities=10% Similarity=0.044 Sum_probs=127.1
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCc-hh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA-VT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s-~~ 108 (940)
+++||++.|.. ..+......+++.+.++. |+++.+ .++..++....+....++.++|.+||-.... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLKI--ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 57899999974 344455667777777664 456544 4666677766667777778899988754333 22
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcC---CeEEEEEEEcCC--cchhhHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG---WREVIAIYVDDD--HGRNGIAA 183 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~---w~~v~ii~~d~~--~g~~~~~~ 183 (940)
.......+...++|+|.+....+... ..+++..+..++...+..+++++...| -+++++|..... ......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 12333445667999998754332111 001344566777777778888877666 799999986532 34566788
Q ss_pred HHHHHhcCce-eEEEeecCCCCCChhHHHHHHHHHhc-----CCCeEEEEEecCCcHHHHHHHHHHcCCCCCC
Q 002301 184 LGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVAL-----TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (940)
Q Consensus 184 l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 250 (940)
|++.+++.|. ++.... ....+.++-...++++.+ .++++|+.. +...+..+++++++.|+..|+
T Consensus 150 f~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~-nd~~A~g~~~al~~~G~~vP~ 219 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQ--SGDFTRSKGKEVMESFIKAENNGKNICMVYAH-NDDMVIGAIQAIKEAGLKPGK 219 (306)
T ss_dssp HHHHTTTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHTTTTTTCCEEEES-SHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHhhCCCeEEEEec--cCCCcHHHHHHHHHHHHHhCCCCCCeeEEEEC-CchHHHHHHHHHHHcCCCCCC
Confidence 9999999885 433211 111233333334444332 356776543 345677889999999987554
No 104
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.87 E-value=0.00096 Score=72.60 Aligned_cols=208 Identities=11% Similarity=0.021 Sum_probs=133.7
Q ss_pred eEEEEEEeecCC--cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh--cCcEEEEcCCCc
Q 002301 31 VVNIGALLSFST--NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME--GQTVAIIGPQDA 106 (940)
Q Consensus 31 ~i~IG~l~~~~~--~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~--~~v~aiiGp~~s 106 (940)
..+||++.|... .+-.....+++.+.++. |+++.+. ++..++..-.+...+++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~~--~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRIL--YAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEEE--ECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEEE--ECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 457999999753 34456677888777774 5666554 667788877788888888 588877653344
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCC-------CCCC-ceEEecCChHHHHHHHHHHHHHcC------C-eEEEEEE
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSS-------LQFP-YFVRTTQSDQYQMAAIAEIVDHYG------W-REVIAIY 171 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~-------~~~p-~~~r~~psd~~~~~ai~~~l~~~~------w-~~v~ii~ 171 (940)
.....+...+...++|+|.+....+.... ..|+ ++..+.+++...+..+++++...+ - +++++|.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 44455566788899999998665443221 1122 256677788888888888876665 4 8999997
Q ss_pred EcCC--cchhhHHHHHHHHhcCce-eEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEE-EecCCcHHHHHHHHHHcCCC
Q 002301 172 VDDD--HGRNGIAALGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVALTESRIIVV-HTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 172 ~d~~--~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~-~~~~~~~~~~l~~a~~~g~~ 247 (940)
.... ......+.|.+.+++.|. .+... +....+.+.-...+.++-...+++-.+ +++...+..+++++++.|+.
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCC
Confidence 5433 344567889999999885 33222 222233444444455544333433333 34445677899999999987
Q ss_pred CCC
Q 002301 248 GTG 250 (940)
Q Consensus 248 ~~~ 250 (940)
.++
T Consensus 231 vP~ 233 (350)
T 3h75_A 231 PGT 233 (350)
T ss_dssp BTT
T ss_pred CCC
Confidence 554
No 105
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.87 E-value=0.0013 Score=69.15 Aligned_cols=196 Identities=11% Similarity=0.098 Sum_probs=121.3
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchhHH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSH 110 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~a~ 110 (940)
+||++.|.. ..+......+++.+.++. |+.+. +.++..++..-.+....++.++|.+||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKII--VEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEEE--EecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998753 333345567777777664 45554 4566667776666777788889988764 44333322
Q ss_pred HHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHc-C-CeEEEEEEEcCC--cchhhHHHHHH
Q 002301 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY-G-WREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~-~-w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
.....+...++|+|.+....+ +. +.+..+..++...+..+++++... | -+++++|..... ......+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 333446678999998754221 11 122345566666777788877665 5 899999986433 23456788999
Q ss_pred HHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 187 TLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 187 ~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
++++. |+++.....-. .+.++-...++++.+. +++.|+ +.+...+..+++++++.|+
T Consensus 148 al~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAAD--FDRSKGLSVMENILQAQPKIDAVF-AQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp HHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCSCCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCEEEeeccCC--CCHHHHHHHHHHHHHhCCCccEEE-ECCchHHHHHHHHHHHCCC
Confidence 99988 88765322111 2333334444444332 455543 3444567788999999997
No 106
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.86 E-value=0.00038 Score=75.46 Aligned_cols=208 Identities=11% Similarity=0.014 Sum_probs=134.2
Q ss_pred ceEEEEEEeec---CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 30 SVVNIGALLSF---STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 30 ~~i~IG~l~~~---~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
..-+||+++|. +..+-.....+++.+.++. |+++. +.++..++..-.+....++.++|.+||-....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35679999986 3333345566666666652 56654 44566677776667777888899988754333
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CcchhhHHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD--DHGRNGIAAL 184 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l 184 (940)
.....+...+...++|+|......+. +.+..+..++..-+..+++++...|.+++++|.... .......+.|
T Consensus 130 ~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp SCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 33345667788889999987543321 122335677777788888888888999999997643 3345668889
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
.+.+++.|+.+.....+....+.++-...+.++.+ .++++|+. .+...+..+++++++.|+..|+-+-+
T Consensus 204 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~v 274 (338)
T 3dbi_A 204 KDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSV 274 (338)
T ss_dssp HHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 99999999765422212222233443444455433 35666654 34456778999999999876554433
No 107
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.86 E-value=0.00018 Score=76.01 Aligned_cols=205 Identities=8% Similarity=-0.045 Sum_probs=124.1
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHH---HHHHHHhcCcEEEEcCCC
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALA---EALHLMEGQTVAIIGPQD 105 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~---~a~~li~~~v~aiiGp~~ 105 (940)
...+||++.|.. ..+......+++.+.++. |+++.+ .++..++....+ ....++.++|.+||-...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV--------HRHVVV--ATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--------TCEEEE--ECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--------CCEEEE--EeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 356899999864 333345566776666652 566654 444445444444 556677778988875333
Q ss_pred chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHH
Q 002301 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (940)
Q Consensus 106 s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (940)
......+ ..+...++|+|.+....+. +.+..+..++..-+..+++++...|-+++++|..+.. ......+.
T Consensus 77 ~~~~~~~-~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 77 DLHDEDL-DELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SSCHHHH-HHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCCHHHH-HHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 2222233 3445579999987543221 2233456777777788888888889999999986533 34566788
Q ss_pred HHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
|.+++++.|+.+.....+....+..+-...+.++.+ .++++|+. ++...+..+++++++.|+..|+-+
T Consensus 150 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di 219 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFC-ANDTMAVSALARFQQLGISVPGDV 219 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCce
Confidence 999999998754211111111233333333444332 35777664 444567789999999998765433
No 108
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.84 E-value=0.00064 Score=72.03 Aligned_cols=200 Identities=12% Similarity=0.131 Sum_probs=126.0
Q ss_pred eEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHH
Q 002301 31 VVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSH 110 (940)
Q Consensus 31 ~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~ 110 (940)
..+||++-..+..+-.....|++-++++ .| . .|.++.+.+.|+..++.........+.+++|++||.... ....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~---~g-y-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAE---EG-Y-KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT-PAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHH---TT-C-CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH-HHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHH---cC-C-CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc-HHHH
Confidence 4579988333332223344555555444 32 2 356888889999999998888888888889999887443 2222
Q ss_pred HHHHhhccCCccEEeeecCCCCCCC----CC--CCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-cchhhH
Q 002301 111 VVSHVANELQVPLLSFSATDPTLSS----LQ--FPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDD-HGRNGI 181 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~ls~----~~--~p~~~r~~psd~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~~ 181 (940)
.+.. ...++|+|..+..++.... .. .+.+..+. +..-+...++++... |-+++++|+.+.+ .+....
T Consensus 76 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 3332 2469999987655543211 01 12333332 222245566777776 8999999997654 345667
Q ss_pred HHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
+.+++++++.|+++...... +.++....++++.. ++++|+...+ ..+...++++.+.+.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP----STNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES----SGGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecC----CHHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 89999999999987654332 23466677777763 6888776543 344455667777664
No 109
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.84 E-value=0.00044 Score=73.06 Aligned_cols=206 Identities=12% Similarity=0.045 Sum_probs=129.5
Q ss_pred ceEEEEEEeec-----C-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcC
Q 002301 30 SVVNIGALLSF-----S-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGP 103 (940)
Q Consensus 30 ~~i~IG~l~~~-----~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp 103 (940)
..-+||+++|. . ..+-.....+++.+.++. |+++.+ .++..++..-......+..+++.+||-.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~~~vdgiIi~ 76 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYALYM--STGETEEEIFNGVVKMVQGRQIGGIILL 76 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEEEE--CCCCSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 45689999997 2 333345566666666652 555544 5555555544445555666789988743
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhH
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGI 181 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~ 181 (940)
...... .....+...++|+|......+.. +.+..+..++..-+..+++++...|-++++++..... ......
T Consensus 77 ~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~ 150 (292)
T 3k4h_A 77 YSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRL 150 (292)
T ss_dssp CCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHH
T ss_pred CCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHH
Confidence 333222 34455667899999875433221 1134466777778888889988889999999986543 345668
Q ss_pred HHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
+.|.+++++.|+.+.....+....+..+....+.++... +++.|+. ++...+..++++++++|+..|+-+
T Consensus 151 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di 222 (292)
T 3k4h_A 151 AGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMA-TDDLIGLGVLSALSKKGFVVPKDV 222 (292)
T ss_dssp HHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEE-cChHHHHHHHHHHHHhCCCCCCeE
Confidence 899999999987643221111123344445555555443 5666653 444567789999999998755433
No 110
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.83 E-value=0.00072 Score=73.27 Aligned_cols=207 Identities=9% Similarity=-0.016 Sum_probs=127.6
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhH
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a 109 (940)
..+||++.|.. ..+......+++.+.++ .|+++.+ .++..++.........++.++|.+||-.......
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 127 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE 127 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 46899999864 33334456666666665 2566654 4666677666666677777889988743222111
Q ss_pred HHHHHhhc-cCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 110 HVVSHVAN-ELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 110 ~~va~~~~-~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
...+... ..++|+|.+....+. . ++...+..++..-+..+++++...|.+++++|..... ......+.|.+
T Consensus 128 -~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~ 201 (340)
T 1qpz_A 128 -PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMK 201 (340)
T ss_dssp -HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHH
T ss_pred -HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHH
Confidence 1223333 368999987653321 1 2223456677777788888887789999999976433 34566788999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
.+++.|+.+.....+....+.++-...+.++.+ .++++|+.. +...+..+++++++.|+..|+-+-+
T Consensus 202 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-nd~~A~g~~~al~~~G~~vP~disv 270 (340)
T 1qpz_A 202 AMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG-GDIMAMGALCAADEMGLRVPQDVSL 270 (340)
T ss_dssp HHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES-SHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 999998765322122211233333444555543 356776643 3456778899999999876544333
No 111
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.82 E-value=0.00027 Score=74.56 Aligned_cols=203 Identities=10% Similarity=0.015 Sum_probs=124.9
Q ss_pred eEEEEEEeec-----CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCC
Q 002301 31 VVNIGALLSF-----STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD 105 (940)
Q Consensus 31 ~i~IG~l~~~-----~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 105 (940)
.-+||++.|. +..+-.....+++.+.++. |+++.+ .++..++....+....++.++|.+||-...
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--------NYFVLP--FPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--------TCEEEE--CCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc--------CCEEEE--EeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 3579999986 4444445667777777662 566544 444444443344555677778998875332
Q ss_pred chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHH
Q 002301 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (940)
Q Consensus 106 s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (940)
......+ ..+...++|+|.+....+ + +.+..+..++...+..+++++...|.+++++|..... ......+.
T Consensus 74 ~~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYNDPRV-QFLLKQKFPFVAFGRSNP---D---WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTCHHH-HHHHHTTCCEEEESCCST---T---CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCcHHH-HHHHhcCCCEEEECCcCC---C---CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 2222233 345567999998754322 1 1223455677777788888887789999999986533 34566788
Q ss_pred HHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc-C---CCeEEEEEecCCcHHHHHHHHHHcCCCCCCe
Q 002301 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-T---ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~---~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~ 251 (940)
|.+.+++.|+.+.....+....+..+-...+.++.+ . ++++|+. .+...+..+++++++.|+..|+-
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~d 217 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTD 217 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTT
T ss_pred HHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCC
Confidence 999999998764321111111233344445555544 3 4677654 34456778899999999875543
No 112
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.82 E-value=0.00096 Score=70.43 Aligned_cols=200 Identities=10% Similarity=-0.001 Sum_probs=128.6
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCch
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAV 107 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~ 107 (940)
..-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.+++.+||- |....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEALV--ATSQNSRISEREQILEFVHLKVDAIFITTLDDV 76 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEEE--EECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 457899999864 333344556666666653 565554 466677777777778888888887764 33333
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHH-c-CCe-----EEEEEEEcC--Ccch
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-Y-GWR-----EVIAIYVDD--DHGR 178 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~-~-~w~-----~v~ii~~d~--~~g~ 178 (940)
........+...++|+|.+....+. .+.+..+..++...+..+++++.. + |-+ ++++|.... ....
T Consensus 77 ~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~ 151 (293)
T 3l6u_A 77 YIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTN 151 (293)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHH
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHH
Confidence 3334445666779999987544332 123455667888888888888766 5 666 999998543 3445
Q ss_pred hhHHHHHHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCC
Q 002301 179 NGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 179 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~ 247 (940)
...+.|.+.+++. |+++.....-. .+..+....+.++... ++++|+. .+...+..++++++++|+.
T Consensus 152 ~R~~gf~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 152 ERHRGFLKGIENEPTLSIVDSVSGN--YDPVTSERVMRQVIDSGIPFDAVYC-HNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCcEEeeeccCC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCchHHHHHHHHHHhCCCC
Confidence 6688999999999 98876543222 3444444555555433 4555543 3445677899999999974
No 113
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.82 E-value=0.0002 Score=77.43 Aligned_cols=205 Identities=13% Similarity=0.040 Sum_probs=126.4
Q ss_pred CceEEEEEEeec-CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCch
Q 002301 29 PSVVNIGALLSF-STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (940)
Q Consensus 29 ~~~i~IG~l~~~-~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (940)
....+||++.|. +..+......+++.+.++. |+++.+ .++..++.........++.++|.+||-.....
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 127 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGNV 127 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSSC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 346789999985 3444455667777777763 566654 45555555545555666667888877533322
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-C--cchhhHHHH
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD-D--HGRNGIAAL 184 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~-~--~g~~~~~~l 184 (940)
....+ ..+...++|+|.+....+ + +.+..+..++..-+..+++++...|.+++++|..+. + ......+.|
T Consensus 128 ~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 200 (332)
T 2hsg_A 128 TEEHV-EELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGY 200 (332)
T ss_dssp CHHHH-HHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHH
T ss_pred CHHHH-HHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHH
Confidence 22333 345568999998754322 1 122345567777778888888888999999998654 2 345668899
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCe
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~ 251 (940)
.+++++.|+.+.....+....+..+-...+.++.+. ++++|+. .+...+..+++++++.|+..|+-
T Consensus 201 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~d 268 (332)
T 2hsg_A 201 KRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGLNVPND 268 (332)
T ss_dssp HHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCC
Confidence 999999997643111111112333333445554333 5677664 44456778999999999865543
No 114
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.80 E-value=0.00072 Score=70.51 Aligned_cols=206 Identities=9% Similarity=-0.001 Sum_probs=131.2
Q ss_pred EEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHH
Q 002301 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSH 110 (940)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~ 110 (940)
-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.+++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 3699999874 333344566666666662 566655 45556777766677778888888877433321122
Q ss_pred HHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHHHH
Q 002301 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGDTL 188 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l 188 (940)
.....+...++|+|.+....+ + +.+..+..++...+..+++++...|-++++++..+.. ......+.|.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---P---AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---T---TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---c---cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 333456677999998754332 1 1233456777777888889988889999999987543 3556788999999
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHHHhc--C-CCeEEEEEecCCcHHHHHHHHHHcCCCCCC-eEEEecC
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVKVAL--T-ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG-YVWIATS 257 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~-~~~viv~~~~~~~~~~~l~~a~~~g~~~~~-~~wi~~~ 257 (940)
++.|+++.....-. .+.++....+.++.. . +++.|+. .+...+..++++++++|+ .++ ...++.+
T Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~-vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQGEA--FSRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPV-DSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEESS--SSHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCG-GGCCCEEEEES
T ss_pred HHcCCChheeecCC--CCHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCC-CccceEEEEeC
Confidence 99998765433222 234444444444432 2 4677654 444567789999999998 444 3334433
No 115
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.78 E-value=0.00087 Score=72.64 Aligned_cols=208 Identities=7% Similarity=-0.025 Sum_probs=127.3
Q ss_pred CCceEEEEEEeec--CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC--CCHHHHHHHHHHHHhcCcEEEEcC
Q 002301 28 RPSVVNIGALLSF--STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN--HSGFLALAEALHLMEGQTVAIIGP 103 (940)
Q Consensus 28 ~~~~i~IG~l~~~--~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~--~~~~~a~~~a~~li~~~v~aiiGp 103 (940)
.....+||++.|. +..+-.....+++.+.++. |+++.+...++. .++..-......++.+++.+||-|
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL--------NINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT--------TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4457899999986 3443345566666666652 567777665555 577666666777888899988876
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCC-CCCCCCCCCceEEecCChHHHHHHHHHHHHH-cC-CeEEEEEEEcCC-cchh
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATD-PTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-YG-WREVIAIYVDDD-HGRN 179 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~-~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~-~~-w~~v~ii~~d~~-~g~~ 179 (940)
............+...++|+|.+.... |.......+.+..+..++...+..+++++.. .| -+++++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 544322233344556689998763332 2110011233445667777778888888766 47 999999975543 3445
Q ss_pred hHHHHHHHHhcCce-eEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 180 GIAALGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 180 ~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
..+.|.+.+++.|+ ..... +....+..+-...+.++.. .++++|+. .+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQSA--YYTKATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--ECCCSSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEEE--ecCCCCHHHHHHHHHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcCC
Confidence 67889999988886 33222 2212233333344444432 34666654 334567788999999997
No 116
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.78 E-value=0.00085 Score=71.37 Aligned_cols=214 Identities=11% Similarity=0.010 Sum_probs=130.2
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 108 (940)
+++||++.|.. ..+-.....+++.+.++. |+++. +.++ .++..-.+....++.++|.+||- |..+..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEVI--KIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEEE--EEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEE--EeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 68999999864 333445667777777775 45553 4555 47777777788888889988764 444444
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHH-HcCCe-----EEEEEE-EcC--Ccchh
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD-HYGWR-----EVIAIY-VDD--DHGRN 179 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~-~~~w~-----~v~ii~-~d~--~~g~~ 179 (940)
.......+...++|+|.+....+.......+.+..+..++...+..+++++. +.|-+ +++++. ... .....
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 4554556777899999876432222111112333455667766776666653 43433 888886 333 23455
Q ss_pred hHHHHHHHHhcCce---eEEEeecCCCCCChhHHHHHHHHHhcC--CCeE-EEEEecCCcHHHHHHHHHHcCCCCCCeEE
Q 002301 180 GIAALGDTLAAKRC---RISFKAPLSVEATEDEITDLLVKVALT--ESRI-IVVHTHYNRGPVVFHVAQYLGMLGTGYVW 253 (940)
Q Consensus 180 ~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~v-iv~~~~~~~~~~~l~~a~~~g~~~~~~~w 253 (940)
..+.|.+.+++.|. ++.....- ..+.+.-...+.++... +++. +|++++...+..+++++++.|+...+...
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~v 228 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVPTK--SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 228 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECS--SSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEeeccC--CCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEE
Confidence 67889999988764 34332221 13444445555555444 4555 34455556777899999999986523333
Q ss_pred EecC
Q 002301 254 IATS 257 (940)
Q Consensus 254 i~~~ 257 (940)
++.|
T Consensus 229 vG~D 232 (306)
T 8abp_A 229 IGIN 232 (306)
T ss_dssp EEES
T ss_pred EEeC
Confidence 4433
No 117
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.72 E-value=0.00026 Score=76.42 Aligned_cols=201 Identities=12% Similarity=0.053 Sum_probs=125.6
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
...+||++.|.. ..+......+++.+.++ .|+++.+ .++..++.........++.++|.+|| ......
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 59 NSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 457899999864 33334556677766665 2566654 45666776666667777778999988 433222
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
. +.+...++|+|.+....+. .+ ..+..++...+..+++++...|.+++++|..+.. ......+.|.+
T Consensus 128 ~----~~l~~~~iPvV~~~~~~~~----~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 196 (330)
T 3ctp_A 128 E----DEYANIDIPVVAFENHILD----NI---ITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLD 196 (330)
T ss_dssp S----GGGTTCCSCEEEESSCCCT----TS---CEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHH
T ss_pred H----HHHHhcCCCEEEEeccCCC----CC---CEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHH
Confidence 1 2345679999987543321 22 2345666677777888888889999999986543 35567889999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhc-CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
.+++.|+.+. ...+....+.++-...+.++.+ .++++|+.. +...+..+++++++.|+..|+-+-+
T Consensus 197 al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-~d~~A~g~~~al~~~G~~vP~disv 263 (330)
T 3ctp_A 197 GARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFVF-NDIAAATVMRALKKRGVSIPQEVQI 263 (330)
T ss_dssp HHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEES-SHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 9999998665 2222211121111122223222 356776654 3445778899999999876544433
No 118
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.70 E-value=0.00087 Score=70.66 Aligned_cols=205 Identities=11% Similarity=0.038 Sum_probs=123.7
Q ss_pred ceEEEEEEeecCC---cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 30 SVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 30 ~~i~IG~l~~~~~---~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
..-+||+++|... .+-.....+++.+.++ .|+++.+.. +..+..........+.+++|.+||-....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST--------TQYHLVVTP--HIHAKDSMVPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--------SSCEEEECC--BSSGGGTTHHHHHHHHHTCCSEEEEESCC
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH--------cCCEEEEec--CCcchhHHHHHHHHHHcCCccEEEEecCC
Confidence 4567999999643 2333344455544433 256666543 33333222222222445678777632222
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAAL 184 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l 184 (940)
... .....+...++|+|......+ +. .+-.+..++...+..+++++...|-+++++|..+.. ......+.+
T Consensus 77 ~~~-~~~~~l~~~~iPvV~i~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf 149 (288)
T 3gv0_A 77 PND-PRVRFMTERNMPFVTHGRSDM---GI---EHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGF 149 (288)
T ss_dssp TTC-HHHHHHHHTTCCEEEESCCCS---SC---CCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHH
T ss_pred CCc-HHHHHHhhCCCCEEEECCcCC---CC---CCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHH
Confidence 222 233456678999998754322 11 223456777778888889988889999999986543 355668899
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
.+.+++.|+.+.....+....+.++....+.++... +++.|+. .+...+..+++++++.|+..|+-+
T Consensus 150 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di 218 (288)
T 3gv0_A 150 NRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVS-ISGSSTIALVAGFEAAGVKIGEDV 218 (288)
T ss_dssp HHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEE-SCHHHHHHHHHHHHTTTCCTTTSC
T ss_pred HHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEEE-cCcHHHHHHHHHHHHcCCCCCCce
Confidence 999999998765432233223445555666666544 4666553 444567789999999998765433
No 119
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.68 E-value=0.00018 Score=75.65 Aligned_cols=200 Identities=11% Similarity=0.001 Sum_probs=123.9
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
..-+||+++|.. ..+-.....+++.+.++. |+++.+...+ ++..-.+....++++++.+|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 356799999864 334445667777666653 5666655444 333333445556777899888 333222
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTL 188 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (940)
...+.. .++|+|.+....+ .+... ..+..++...+..+++++...|-+++++|..+........+.|.+++
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QASTH---DSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SSCST---TEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CCCCC---CEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998755432 11222 33556777788888899888899999999876544667788999999
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
++.|+.+.... .....+..+-...+.++.. .++++|+. ++...+..++++++++|+..++-+
T Consensus 143 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di 206 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIFS-SNDITAIGALGAARELGLRVPEDL 206 (280)
T ss_dssp HHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCee
Confidence 99998766433 3222334444444444433 34666654 444567789999999998755433
No 120
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.63 E-value=0.0024 Score=66.66 Aligned_cols=204 Identities=9% Similarity=-0.002 Sum_probs=127.0
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
..-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..+...-.+....++.+++.+||-.....
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~- 74 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESR--------GYIGVL--FDANADIEREKTLLRAIGSRGFDGLILQSFSN- 74 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-
Confidence 456899999864 223334455555555542 566554 45556666666666777778888877433333
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-c--chhhHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD-H--GRNGIAALG 185 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~-~--g~~~~~~l~ 185 (940)
......+...++|+|......+ +.. +-.+..++..-+..+++++...|-++++++..+.. . .....+.|+
T Consensus 75 -~~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~ 147 (276)
T 3jy6_A 75 -PQTVQEILHQQMPVVSVDREMD---ACP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGIL 147 (276)
T ss_dssp -HHHHHHHHTTSSCEEEESCCCT---TCS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHCCCCEEEEecccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHH
Confidence 3445566778999998754332 112 23455677778888889988899999999987654 2 345678888
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc-CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
+.+++.+. +..... . ......+....+.+.. .++++|+. ++...+..+++++++.|+..|+-+-+.
T Consensus 148 ~~l~~~~~-~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vi 214 (276)
T 3jy6_A 148 AAAQDVDV-LEVSES-S-YNHSEVHQRLTQLITQNDQKTVAFA-LKERWLLEFFPNLIISGLIDNQTVTAT 214 (276)
T ss_dssp TTCSEEEE-EEECSS-S-CCHHHHHHHHHHHHHSSSSCEEEEE-SSHHHHHHHSHHHHHSSSCCSSSEEEE
T ss_pred HHHHhCCc-EEEecc-c-cCCcHHHHHHHHHHhcCCCCcEEEE-eCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 88888764 221110 0 0122334444444543 35666543 445567789999999998766544443
No 121
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.62 E-value=0.00027 Score=75.48 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=73.7
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHH---hhhCCCccCcc-cCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHh
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLV---DELNIDESRLV-PLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLS 757 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~---~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~ 757 (940)
.+|++++||. |++|++..|+.....+. +..+.....+. .+.+..+...++.+ |++||++...++..+...
T Consensus 95 ~~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~ 168 (308)
T 2x26_A 95 SPIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQ----GNVDAWAIWDPYYSAALL 168 (308)
T ss_dssp CSCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHT----TSSSEEEEETTHHHHHHH
T ss_pred CCCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHc----CCCCEEEecchhHHHHHh
Confidence 4688999998 88999988876554432 22344322221 23467889999999 899999888887776655
Q ss_pred cCCcEEEeCC--ccccCcceeecC----CCCc-chHHHHHHHHh----ccccc-chHHHHHhhcc
Q 002301 758 TRCEFSIVGQ--VFTKNGWGFAFP----RDSP-LAVDISTAILK----LSENG-DLQRIHDKWLL 810 (940)
Q Consensus 758 ~~~~l~~~~~--~~~~~~~~~~~~----k~sp-l~~~~~~~il~----l~e~G-~~~~i~~kw~~ 810 (940)
+. ++.++.. .+....-.+++. +..| +.+.|++++.+ +.+++ ...++..+|+.
T Consensus 169 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 169 QG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp HS-SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred cC-CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 43 3444422 221222223332 3344 77788877776 33443 34556666654
No 122
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.61 E-value=0.00045 Score=73.26 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=81.9
Q ss_pred CCCCChhHhhh------CCCCeEEE-eCchHH---HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhh
Q 002301 682 SPIKGIDSLRS------SNYPIGYQ-VNSFAR---NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 751 (940)
Q Consensus 682 ~~i~si~dL~~------~~~~i~~~-~gs~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 751 (940)
.+++|++||+. ....+|.. .|+... ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~----G~VD~~~~~~~~ 195 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLG----KQVDLMCDQTTN 195 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSCEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHc----CCccEEEechHH
Confidence 68999999975 23456665 355432 2333445554 335689999999999999 899999988776
Q ss_pred HHHHHhcCCcEEEe---CC----------ccc---------cCcceeecCCCCc--chHHHHHHHHhcccccchHHHHHh
Q 002301 752 AELFLSTRCEFSIV---GQ----------VFT---------KNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDK 807 (940)
Q Consensus 752 ~~~~~~~~~~l~~~---~~----------~~~---------~~~~~~~~~k~sp--l~~~~~~~il~l~e~G~~~~i~~k 807 (940)
...+++.. +++.+ ++ .+. ...++++.|||-| +.+.+++++.++.+++.+++..++
T Consensus 196 ~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~ 274 (312)
T 2f5x_A 196 TTQQITSG-KVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQ 274 (312)
T ss_dssp HHHHHHTT-SSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcC-CeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 65555432 22222 11 011 1125788999977 999999999999999988776655
Q ss_pred h
Q 002301 808 W 808 (940)
Q Consensus 808 w 808 (940)
+
T Consensus 275 ~ 275 (312)
T 2f5x_A 275 L 275 (312)
T ss_dssp T
T ss_pred C
Confidence 4
No 123
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.60 E-value=0.0026 Score=67.85 Aligned_cols=200 Identities=8% Similarity=-0.008 Sum_probs=128.0
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 108 (940)
..+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.+++.+||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVFV--QSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 35799999863 444456677888777773 556554 456677777777777888888888764 443333
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHH-HcCCeEEEEEEEcCC--cchhhHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD-HYGWREVIAIYVDDD--HGRNGIAALG 185 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~-~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (940)
.......+...++|+|.+....+. ... ...+..++...+..+++++. ..|-+++++|..+.. ......+.|+
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 334455677789999987543322 111 13455677777888888876 899999999985433 3445578888
Q ss_pred HHHhcC----ceeEEEeecCCCCCChhHHHHHHHHHh-c--CCCeEEEEEecCCcHHHHHHHHHHcCCC
Q 002301 186 DTLAAK----RCRISFKAPLSVEATEDEITDLLVKVA-L--TESRIIVVHTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 186 ~~l~~~----g~~v~~~~~~~~~~~~~~~~~~l~~l~-~--~~~~viv~~~~~~~~~~~l~~a~~~g~~ 247 (940)
+.+++. ++.+..... ....+.......+.++- . .++++|+.. +...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQW-VDGWLPENALKIMENALTANNNKIDAVVAS-NDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEEEES-SHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEEEEC-CCchHHHHHHHHHHcCCC
Confidence 888877 566654332 11123333334444433 2 356665443 445677889999999975
No 124
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.59 E-value=0.00024 Score=77.42 Aligned_cols=106 Identities=21% Similarity=0.091 Sum_probs=62.2
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHH---hhhCCCcc--CcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHH
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLV---DELNIDES--RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 756 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~---~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 756 (940)
.+|++++||. |++|++..|+.....+. ...+.... +++.+ +..+...+|.+ |++||++...+......
T Consensus 109 s~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~~~~~~~~ 181 (348)
T 3uif_A 109 STAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALAS----GTVDGFFSLFDSYILED 181 (348)
T ss_dssp CCCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHH----TSSSEEEESTTHHHHHH
T ss_pred CCCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHc----CCCCEEEechHHHHHHh
Confidence 4799999998 99999988876544332 23343322 23333 57789999999 89999988777664332
Q ss_pred hcCCcEEEeCCcc---ccCcceeecCCC----Cc-chHHHHHHHHh
Q 002301 757 STRCEFSIVGQVF---TKNGWGFAFPRD----SP-LAVDISTAILK 794 (940)
Q Consensus 757 ~~~~~l~~~~~~~---~~~~~~~~~~k~----sp-l~~~~~~~il~ 794 (940)
............+ .....+++++++ .| ....|.+++.+
T Consensus 182 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~ 227 (348)
T 3uif_A 182 RGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLK 227 (348)
T ss_dssp TTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHH
Confidence 2221222222222 112345666665 44 55555555543
No 125
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.58 E-value=0.0036 Score=66.12 Aligned_cols=206 Identities=12% Similarity=0.066 Sum_probs=124.1
Q ss_pred ceEEEEEEeecC------CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcC
Q 002301 30 SVVNIGALLSFS------TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGP 103 (940)
Q Consensus 30 ~~i~IG~l~~~~------~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp 103 (940)
..-+||+++|.. ..+-.....+++.+.++ .|+.+. +.++..+...-.+....+..++|.+||-.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~ 75 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ--------HGYGTQ--TTVSNNMNDLMDEVYKMIKQRMVDAFILL 75 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT--------TTCEEE--ECCCCSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH--------CCCEEE--EEcCCCChHHHHHHHHHHHhCCcCEEEEc
Confidence 356899999542 22222344555544443 256654 44555555554455556667789888743
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhH
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGI 181 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~ 181 (940)
...... .....+...++|+|......+... . .+..+..++..-+..+++++...|-+++++|..... ......
T Consensus 76 ~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~~-~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 150 (295)
T 3hcw_A 76 YSKEND-PIKQMLIDESMPFIVIGKPTSDID-H---QFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRI 150 (295)
T ss_dssp CCCTTC-HHHHHHHHTTCCEEEESCCCSSGG-G---GSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHH
T ss_pred CcccCh-HHHHHHHhCCCCEEEECCCCcccc-C---CceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHH
Confidence 222222 334556678999998754332110 0 123455677777888888888889999999986543 345668
Q ss_pred HHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc-----CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-----TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
+.|++++++.|+.+.... .. .+.++....++++.. ..+++|+ +.+...+..++++++++|+..|+-+-|
T Consensus 151 ~Gf~~al~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 224 (295)
T 3hcw_A 151 QGFETVASQFNLDYQIIE-TS--NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVMT 224 (295)
T ss_dssp HHHHHHHHHTTCEEEEEE-EC--SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEEE
T ss_pred HHHHHHHHHcCCCeeEEe-cc--CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 899999999998765221 11 233333333444322 2567665 344456788999999999876654433
No 126
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.57 E-value=0.0006 Score=71.98 Aligned_cols=207 Identities=11% Similarity=0.027 Sum_probs=128.8
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
..-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++....+....++.+++.+||-.....
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~- 75 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHK--------GYSVLL--ANTAEDIVREREAVGQFFERRVDGLILAPSEG- 75 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-
Confidence 456899999864 333344566777666662 566554 45666777666667777788999887533332
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
.......+...++|+|......+. +.+..+..++...+..+++++...|-++++++..... ......+.|.+
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (291)
T 3egc_A 76 EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRA 149 (291)
T ss_dssp CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHH
T ss_pred ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 233445667789999987543321 2234566777888888889988889999999986543 45566888999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHh--cCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVA--LTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~--~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
.+++.|+.+..........+.++....+.++. ..++++|+. .+...+..+++++++.|+..|+-+-+
T Consensus 150 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 218 (291)
T 3egc_A 150 AMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLT-SSHRITEGAMQALNVLGLRYGPDVEI 218 (291)
T ss_dssp HHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEE-SSHHHHHHHHHHHHHHTCCBTTTBEE
T ss_pred HHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999876432111111111111122333332 245677653 44456778999999999876543333
No 127
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.56 E-value=0.0014 Score=71.19 Aligned_cols=209 Identities=9% Similarity=0.004 Sum_probs=129.5
Q ss_pred CceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCch
Q 002301 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (940)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (940)
...-+||+++|.. ..+-.....+++.+.++ .|+++. +.++..++..-.+....++.+++.+||-.....
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~ 135 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH 135 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3456899999864 33333444555554443 266664 445666777666667777888888776422222
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC---CcchhhHHHH
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD---DHGRNGIAAL 184 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~l 184 (940)
.. .....+...++|+|....... .+....+..++..-+..+++++...|-+++++|.... .......+.|
T Consensus 136 ~~-~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 208 (344)
T 3kjx_A 136 SE-AARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGF 208 (344)
T ss_dssp CH-HHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHH
Confidence 22 334556678999998743211 1223355677777788888888888999999998653 2345667899
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
.+++++.|+.+.....+....+.++-...+.++.. .+++.|+ +++...+..+++++++.|+..|+-+-+.
T Consensus 209 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 209 TEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999999765433323222233333333444322 3567765 4444667789999999998766544443
No 128
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.55 E-value=0.0032 Score=66.24 Aligned_cols=204 Identities=15% Similarity=0.080 Sum_probs=126.5
Q ss_pred ceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhH
Q 002301 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (940)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a 109 (940)
..-+||++++.+..+-.....+++.+.++. |+++.+...+...+ -.+....++.++|.+||-.......
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~~~ 79 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPSRA---EKVAVQALMRERCEAAILLGTRFDT 79 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTTBC---HHHHHHHHTTTTEEEEEEETCCCCH
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCCHH---HHHHHHHHHhCCCCEEEEECCCCCH
Confidence 356799999544444445566776666652 67776655544333 2344556677789988743322222
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-cchhhHHHHHHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD-HGRNGIAALGDTL 188 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l~~~l 188 (940)
..+. .+.. ++|+|......+ + +.+-.+..++..-+..+++++...|-+++++|..... ......+.|.+++
T Consensus 80 ~~~~-~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al 151 (289)
T 3k9c_A 80 DELG-ALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAM 151 (289)
T ss_dssp HHHH-HHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHH
T ss_pred HHHH-HHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHH
Confidence 3343 3445 999998754332 1 2234566777777888889888889999999986543 3456688999999
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
++.|+.+... .+....+.++-...+.++.. .+++.|+. ++...+..+++++++.|+..|+-+-+
T Consensus 152 ~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~v 217 (289)
T 3k9c_A 152 DRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAVVA-FNDRCATGVLDLLVRSGRDVPADISV 217 (289)
T ss_dssp HHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999764321 12222344444455555544 35666543 34456778999999999876654433
No 129
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.53 E-value=0.0014 Score=69.17 Aligned_cols=203 Identities=9% Similarity=-0.010 Sum_probs=122.3
Q ss_pred eEEEEEEeec-----CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCC
Q 002301 31 VVNIGALLSF-----STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD 105 (940)
Q Consensus 31 ~i~IG~l~~~-----~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 105 (940)
.-+||+++|. +..+-.....+++.+.++ .|+.+.+...+..... ......+..++|.+||-...
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~---~~~~~~l~~~~vdGiIi~~~ 74 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGK--------RGLDLLLIPDEPGEKY---QSLIHLVETRRVDALIVAHT 74 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH--------TTCEEEEEEECTTCCC---HHHHHHHHHTCCSEEEECSC
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHH--------CCCEEEEEeCCChhhH---HHHHHHHHcCCCCEEEEeCC
Confidence 5679999983 232333445666666555 2677777665432111 22233344568888764222
Q ss_pred chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHH
Q 002301 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (940)
Q Consensus 106 s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (940)
.... .....+...++|+|.+....+ + +.+-.+..++..-+..+++++...|-+++++|..... ......+.
T Consensus 75 ~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 147 (294)
T 3qk7_A 75 QPED-FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQG 147 (294)
T ss_dssp CSSC-HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHH
T ss_pred CCCh-HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHH
Confidence 2222 334456677999998754321 1 2233466777777888889888889999999987643 34466889
Q ss_pred HHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
|.+++++.|+.+.....+....+.++-...+.++.. .++++|+. ++...+..+++++++.|+..|+-+
T Consensus 148 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 217 (294)
T 3qk7_A 148 YVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIIT-DCNMLGDGVASALDKAGLLGGEGI 217 (294)
T ss_dssp HHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCSSTTSC
T ss_pred HHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 999999998764211111111233333344444433 35666554 444667789999999998766443
No 130
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.52 E-value=0.00054 Score=73.71 Aligned_cols=93 Identities=20% Similarity=0.197 Sum_probs=58.7
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHH---hhhCCCcc--CcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHH
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLV---DELNIDES--RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 756 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~---~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 756 (940)
.+|++++||. |++|++..|+.....+. ...+.... +++.. +..+...+|.+ |++||++...++.....
T Consensus 121 s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~p~~~~~~ 193 (324)
T 3ksx_A 121 SALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAA----GQVDAWAIWDPWYSALT 193 (324)
T ss_dssp CSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHT----TCCSEEEEETTHHHHHH
T ss_pred CCCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHc----CCCCEEEEccHHHHHHH
Confidence 4799999998 99999998876544332 23344322 23333 67899999999 89999988888777665
Q ss_pred hcC-CcEEEeCCccccCcceeecCCC
Q 002301 757 STR-CEFSIVGQVFTKNGWGFAFPRD 781 (940)
Q Consensus 757 ~~~-~~l~~~~~~~~~~~~~~~~~k~ 781 (940)
.+. .+.......+......+++++.
T Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 194 LDGSARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp HTTSEEEEEESTTSCCCCEEEEEEHH
T ss_pred hcCCcEEEecccccCCCccEEEECHH
Confidence 553 2333333333333334444443
No 131
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.51 E-value=0.002 Score=68.06 Aligned_cols=207 Identities=13% Similarity=0.095 Sum_probs=128.6
Q ss_pred EEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCch--
Q 002301 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAV-- 107 (940)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~-- 107 (940)
-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.+++.+||- |..+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ--------GYSMLL--TSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 6899999874 333445567777776662 566654 455567777677777788888988774 33221
Q ss_pred -hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-cchhhHHHHH
Q 002301 108 -TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD-HGRNGIAALG 185 (940)
Q Consensus 108 -~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l~ 185 (940)
........+...++|+|......+. .. +..+..++..-+..+++++...|-++++++..... ......+.|.
T Consensus 86 ~~~~~~~~~~~~~~iPvV~~~~~~~~---~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~ 159 (298)
T 3tb6_A 86 TPNIGYYLNLEKNGIPFAMINASYAE---LA---APSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFI 159 (298)
T ss_dssp CTTHHHHHHHHHTTCCEEEESSCCTT---CS---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCEEEEecCcCC---CC---CCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHH
Confidence 2334445567789999987543322 12 22355677778888889988889999999986543 3445678899
Q ss_pred HHHhcCceeEEEeecCCCCC--ChhHHHHHHHHHh-cC-C--CeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 186 DTLAAKRCRISFKAPLSVEA--TEDEITDLLVKVA-LT-E--SRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~--~~~~~~~~l~~l~-~~-~--~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
+.+++.|+.+.....+.... ........+.++. .. + +++|+. .+...+..+++++++.|+..|+-+-+.
T Consensus 160 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 160 QAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILC-YNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEE-eCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999987643211111000 0011122333332 22 3 666553 344567789999999998765544443
No 132
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.50 E-value=0.00079 Score=70.95 Aligned_cols=206 Identities=12% Similarity=-0.001 Sum_probs=124.8
Q ss_pred CceEEEEEEeec--CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 29 PSVVNIGALLSF--STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 29 ~~~i~IG~l~~~--~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
...-+||+++|. +..+-.....+++-+.++. |+++.+...+...+. -.+....+..++|.+||-....
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~~ 78 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDC--LHLEKGISKENSFDAAIIANIS 78 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTC--GGGCGGGSTTTCCSEEEESSCC
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchh--HHHHHHHHhccCCCEEEEecCC
Confidence 346789999992 3344445667777776663 455544433222211 1222334555688888754443
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAAL 184 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l 184 (940)
.....+... ...++|+|......+ .+-.+..++..-+..+++++...|-++++++..+.. ......+.|
T Consensus 79 ~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 149 (289)
T 3g85_A 79 NYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGF 149 (289)
T ss_dssp HHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHH
T ss_pred cccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHH
Confidence 333333333 467999998755322 234566777788888899988889999999986543 345678899
Q ss_pred HHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
.+.+++.|+.+.....+....+.++....+.++.+. ++++|+. .+...+..++++++++|+..|+-+-+
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 220 (289)
T 3g85_A 150 IETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFC-NSDSIALGVISVLNKRQISIPDDIEI 220 (289)
T ss_dssp HHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEE-cCCHHHHHHHHHHHHcCCCCCCceEE
Confidence 999999987643211112123344445555555443 4666653 44456778999999999876544333
No 133
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.50 E-value=0.00076 Score=71.24 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=81.9
Q ss_pred CCCCChhHhhhC------CCCeEEE-eCchHH---HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhh
Q 002301 682 SPIKGIDSLRSS------NYPIGYQ-VNSFAR---NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 751 (940)
Q Consensus 682 ~~i~si~dL~~~------~~~i~~~-~gs~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 751 (940)
.+++|++||+.. ...+|.. .|+... ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~----G~vD~~~~~~~~ 186 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLG----SQIGLAVVTASS 186 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSSCEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHC----CCccEEEEcHHH
Confidence 589999999751 2245554 244332 2333444554 335689999999999999 899999988766
Q ss_pred HHHHHhcCCcEEEe---CC----------c--------cc-cCcceeecCCCCc--chHHHHHHHHhcccccchHHHHHh
Q 002301 752 AELFLSTRCEFSIV---GQ----------V--------FT-KNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDK 807 (940)
Q Consensus 752 ~~~~~~~~~~l~~~---~~----------~--------~~-~~~~~~~~~k~sp--l~~~~~~~il~l~e~G~~~~i~~k 807 (940)
...+++. .+++.+ ++ . +. ...++++.|+|-| ..+.+++++.++.+++.+++..++
T Consensus 187 ~~~~i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~ 265 (301)
T 2qpq_A 187 AIPFIKA-GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLAD 265 (301)
T ss_dssp HHHHHHT-TSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhc-CCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 6544443 233332 11 0 11 1236788999977 999999999999999988877666
Q ss_pred h
Q 002301 808 W 808 (940)
Q Consensus 808 w 808 (940)
+
T Consensus 266 ~ 266 (301)
T 2qpq_A 266 L 266 (301)
T ss_dssp H
T ss_pred C
Confidence 5
No 134
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.50 E-value=0.00012 Score=79.53 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=76.1
Q ss_pred CCCCChhHh-hhCCCCeEEEeCchHHHHH----HhhhCCCc--cCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHH
Q 002301 682 SPIKGIDSL-RSSNYPIGYQVNSFARNYL----VDELNIDE--SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL 754 (940)
Q Consensus 682 ~~i~si~dL-~~~~~~i~~~~gs~~~~~l----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~ 754 (940)
.+|++++|| . |++||+..++....++ .+..+... -+++.+ +..+...+|.+ |++||++...++...
T Consensus 143 s~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~----G~vDa~~~~~p~~~~ 215 (341)
T 3un6_A 143 MHLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSE----HRITGYSVAEPFGAL 215 (341)
T ss_dssp CCGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHH
T ss_pred CCCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHc----CCCCEEEecCCHHHH
Confidence 468899999 6 8899998754333321 13344432 234445 46788899999 899999998888776
Q ss_pred HHhcCC-cEEEeCCcc-ccCc-ceeecCCC----Cc-----chHHHHHHHHhcccccchHHHHHhhcc
Q 002301 755 FLSTRC-EFSIVGQVF-TKNG-WGFAFPRD----SP-----LAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 755 ~~~~~~-~l~~~~~~~-~~~~-~~~~~~k~----sp-----l~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
...+.. ........+ ...+ ..++++++ .| +...+++++..+.+++.-.++..+|+.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 216 GEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp HHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred HHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 665543 222222222 2222 45666554 34 666677777777777644466677765
No 135
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.50 E-value=0.0005 Score=74.60 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=97.7
Q ss_pred HHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeee----cCcceeeeeccccccccEEEEEeccCCCCC
Q 002301 504 INLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAII----TNRTKMADFTQPYIESGLVVVAPVRKLDSN 579 (940)
Q Consensus 504 ~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t----~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~ 579 (940)
.++.|+++++. ++ ++|..++..+.+|++|+++++...+ .++.....+..++...+..+++++..
T Consensus 59 ~~~~g~~v~~~--~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 126 (346)
T 3qsl_A 59 FKDEGLDVSIA--DF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN---- 126 (346)
T ss_dssp HHHTTCEEEEE--EC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT----
T ss_pred hHhhCCeEEEE--ec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc----
Confidence 35678775544 32 4599999999999999998765544 45666777777777667777776543
Q ss_pred cceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhh
Q 002301 580 AWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFV 659 (940)
Q Consensus 580 ~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~ 659 (940)
T Consensus 127 -------------------------------------------------------------------------------- 126 (346)
T 3qsl_A 127 -------------------------------------------------------------------------------- 126 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEE-eCchHHHHHH---hhhCCC--ccCcccCCCHHHHHHHh
Q 002301 660 VLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQ-VNSFARNYLV---DELNID--ESRLVPLNSPEEYAKAL 733 (940)
Q Consensus 660 ~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~-~gs~~~~~l~---~~~~~~--~~~~~~~~~~~~~~~~l 733 (940)
.++|++++||. |++|++. .|+....++. +..+.. +-+++.+....+...+|
T Consensus 127 ---------------------~~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 127 ---------------------LPGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ---------------------CTTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ---------------------ccCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 13899999998 8899998 6765443332 233443 23456677778999999
Q ss_pred hcCCCCCceEEEEechhhHHHHHhcC
Q 002301 734 KDGPHKGGVAAVVDDRAYAELFLSTR 759 (940)
Q Consensus 734 ~~~~~~g~~~a~~~~~~~~~~~~~~~ 759 (940)
.+ |.+|+++...++......+.
T Consensus 184 ~~----G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 184 RS----GQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HH----TSCSEEEEETTHHHHHHHTT
T ss_pred Hc----CCccEEEecchhHHHHHhCC
Confidence 99 89999998888776655554
No 136
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.49 E-value=0.00058 Score=72.43 Aligned_cols=122 Identities=13% Similarity=0.187 Sum_probs=81.3
Q ss_pred CCCCChhHhhh------CCCCeEEE-eCchHH---HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhh
Q 002301 682 SPIKGIDSLRS------SNYPIGYQ-VNSFAR---NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 751 (940)
Q Consensus 682 ~~i~si~dL~~------~~~~i~~~-~gs~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 751 (940)
.+++|++||+. ....+|.. .|+... ..+.+..+.. ...++|....+.+.+|.. |++|+++.....
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~----G~vD~~~~~~~~ 199 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVG----GQIELIFDNLPS 199 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHH----TSSSEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHc----CCceEEEEcHHH
Confidence 58999999975 12345555 355332 2333445554 335789999999999999 899999988776
Q ss_pred HHHHHhcC-Cc-EEEeCC----------cc--------c-cCcceeecCCCCc--chHHHHHHHHhcccccchHHHHHhh
Q 002301 752 AELFLSTR-CE-FSIVGQ----------VF--------T-KNGWGFAFPRDSP--LAVDISTAILKLSENGDLQRIHDKW 808 (940)
Q Consensus 752 ~~~~~~~~-~~-l~~~~~----------~~--------~-~~~~~~~~~k~sp--l~~~~~~~il~l~e~G~~~~i~~kw 808 (940)
..-+++.. .+ +-+.++ .+ . ...++++.|+|-| ..+.+++++.++.+++.+++..+++
T Consensus 200 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 200 SMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 65444432 22 222211 01 1 1125788999977 9999999999999999887776665
No 137
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.45 E-value=0.0028 Score=67.30 Aligned_cols=201 Identities=15% Similarity=0.062 Sum_probs=125.4
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
..-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.++|.+||-......
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVLL--GQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEEE--EECCSTTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 456799999864 334445667777776663 556554 445556666566666677788988875333322
Q ss_pred HH-HHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHH
Q 002301 109 SH-VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (940)
Q Consensus 109 a~-~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (940)
.. .+..+. . ++|+|......+. ..+ .+..++..-+..+++++...|-+++++|..... ......+.|.
T Consensus 84 ~~~~~~~l~-~-~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (303)
T 3kke_A 84 DDDMLAAVL-E-GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYL 154 (303)
T ss_dssp CHHHHHHHH-T-TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHH
T ss_pred cHHHHHHHh-C-CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHH
Confidence 23 444444 4 9999987554332 222 355677777888888888899999999986433 3456688999
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHH-----hcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCC
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKV-----ALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l-----~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~ 250 (940)
+.+++.|+.+..........+.++-...+.++ ... +++.|+. ++...+..+++++++.|+..|+
T Consensus 155 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~ 225 (303)
T 3kke_A 155 ETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVV-ASVNAAVGALSTALRLGLRVPE 225 (303)
T ss_dssp HHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCC
Confidence 99999987653211111112334444555555 433 4666554 3445677899999999987654
No 138
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.42 E-value=0.0038 Score=67.76 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=120.2
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
..-+||++.|.. ..+-.....+++.+.++ .|+++.+ .++..++.........++.++|.+||-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASK--------AGLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356799999853 33333455666666655 2566554 455556665555666677778888775433332
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
.. ....+...++|+|.+....+. ....+ .+..++..-+..+++++...|.+++++|..+.. ......+.|.+
T Consensus 135 ~~-~~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 AN-QLEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp HH-HHHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred hH-HHHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 22 334455679999987543221 01222 344566666777888888889999999986533 34566788999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCC-CeEEEEEecCCcHHHHHHHHHHcCCCCCCeEE
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-SRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 253 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~w 253 (940)
.+++.|+..... +....+.++-...+.++.+.. + + |++.+...+..+++++++.|+..|+-+-
T Consensus 209 al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~-a-i~~~nD~~A~g~~~al~~~G~~vP~dis 272 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK-T-LFAGDSMMTIGVIEACHKAGLVIGKDVS 272 (348)
T ss_dssp HHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS-E-EEESSHHHHHHHHHHHHHTTCCBTTTBE
T ss_pred HHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC-E-EEEcChHHHHHHHHHHHHcCCCCCCCeE
Confidence 999998632211 111123333334445543333 4 3 3444555677899999999987654333
No 139
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.41 E-value=0.0072 Score=65.73 Aligned_cols=207 Identities=12% Similarity=0.072 Sum_probs=127.2
Q ss_pred eEEEEEEeecCC-cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhH
Q 002301 31 VVNIGALLSFST-NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (940)
Q Consensus 31 ~i~IG~l~~~~~-~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a 109 (940)
.-.||+++|... .+-.....+++.+.++ .|+.+.+ .++..++..-.+....++.+++.+||-.......
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~ 139 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQ--------GGLQLLL--GYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE 139 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH
Confidence 457999998642 2223445566655555 2566654 4556677666666677777888877642222222
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCc---chhhHHHHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH---GRNGIAALGD 186 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~---g~~~~~~l~~ 186 (940)
.....+...++|+|...... .. +....+..++..-+..+++++...|-+++++|..+... .....+.|.+
T Consensus 140 -~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~ 212 (355)
T 3e3m_A 140 -QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKR 212 (355)
T ss_dssp -HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHH
Confidence 33455667899999863221 11 22345667777778888888888999999999875432 4567889999
Q ss_pred HHhcCceeEEEeecC-CCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 187 TLAAKRCRISFKAPL-SVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~-~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
++++.|+.+.....+ ....+.++-...+.++.. .++++|+. ++...+..+++++++.|+..|+-+-|.
T Consensus 213 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 213 AMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFC-VSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp HHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999765411111 111223333334444332 35677554 444567789999999998766544443
No 140
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.37 E-value=0.013 Score=60.80 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=115.9
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchhHH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSH 110 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~a~ 110 (940)
+||++.|.. ..+-.....+++.+.++. |+++.+ .++..++..-......++.++|.+||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 588888753 333334556666666653 556544 455566665555566677778998763 43333222
Q ss_pred HHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~--~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
.....+...++|+|......+ +. +..-.+..++..-+..+++++... |-+++++|..... ......+.|++
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 233445667999998754322 11 112234566666677777876555 5689999985433 23456788999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
++++.|+++.....- ..+.+.-...++++.. ..++.|+. .+...+..+++++++.|+
T Consensus 148 al~~~g~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 148 AVAAHKFNVLASQPA--DFDRIKGLNVMQNLLTAHPDVQAVFA-QNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHTCEEEEEEEC--TTCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCEEEEecCC--CCCHHHHHHHHHHHHHhCCCccEEEE-CCCcHHHHHHHHHHHcCC
Confidence 999999876532211 1233333333444322 34566443 444567889999999997
No 141
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.31 E-value=0.0059 Score=63.73 Aligned_cols=198 Identities=10% Similarity=-0.038 Sum_probs=117.8
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
...+||++.|.. ..+-.....+++.+.++ .|+.+.+...+ .++..-. ++ +|.+||-......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~--~~~~~~~----~~---~vdgiI~~~~~~~ 69 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCSGK--KSHLFIP----EK---MVDGAIILDWTFP 69 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEEST--TTTTCCC----TT---TCSEEEEECTTSC
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEeCC--CCHHHHh----hc---cccEEEEecCCCC
Confidence 456899999863 33333455666666554 25676654332 2221100 01 6776654222212
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
...+ ..+...++|+|.+....+ + +.+..+..++...+..+++++...|.+++++|..+.. ......+.|.+
T Consensus 70 ~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 142 (277)
T 3cs3_A 70 TKEI-EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTR 142 (277)
T ss_dssp HHHH-HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHH-HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHH
Confidence 2333 344568999998754322 1 2344566777777788888888889999999986533 34566788999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC---CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALT---ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
.+++.|+.+. . +....+.++-...+.++.+. ++++|+. .+...+..+++++++.|+..|+-+.+.
T Consensus 143 ~l~~~g~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 143 ELTRFGIPYE-I--IQGDFTEPSGYAAAKKILSQPQTEPVDVFA-FNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHTTCCEE-E--EECCSSHHHHHHHHHHHTTSCCCSSEEEEE-SSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHcCCCee-E--EeCCCChhHHHHHHHHHHhcCCCCCcEEEE-cChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 9999998765 1 11112344444555665443 4666553 344557788999999998765544443
No 142
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.29 E-value=0.01 Score=60.91 Aligned_cols=189 Identities=11% Similarity=0.016 Sum_probs=118.4
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHHH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHV 111 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~~ 111 (940)
+||++.|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....+..+++.+||-........
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 72 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE- 72 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH-
Confidence 689998853 333334556666666653 566554 34555666555556667777888776422211111
Q ss_pred HHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc--C-CcchhhHHHHHHHH
Q 002301 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD--D-DHGRNGIAALGDTL 188 (940)
Q Consensus 112 va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d--~-~~g~~~~~~l~~~l 188 (940)
+.....++|+|...... +.+-.+..++..-+..+++++...|.++++++..+ + .......+.|.+++
T Consensus 73 --~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al 142 (255)
T 1byk_A 73 --EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFC 142 (255)
T ss_dssp --TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHH
T ss_pred --HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHH
Confidence 23455689999864321 12345567777778888888888899999999854 2 34566788999999
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
++.|+.+.. +....+..+-...+.++...++++|+. ++...+..+++++++.|+
T Consensus 143 ~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 143 KAHKLHPVA---ALPGLAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHcCCCcce---eecCCccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC
Confidence 999976432 221223333334445544456777654 344567789999999987
No 143
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.28 E-value=0.0025 Score=66.51 Aligned_cols=200 Identities=11% Similarity=0.048 Sum_probs=117.3
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
..-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-......++.+++.+||-...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~-- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVLI--GNSDNDIKKAQGYLATFVSHNCTGMISTAFN-- 74 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECGGG--
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC--
Confidence 356799999864 333344556666666552 455544 5556677666666777778888888753322
Q ss_pred HHHHHH-hhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHH
Q 002301 109 SHVVSH-VANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (940)
Q Consensus 109 a~~va~-~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (940)
... .. .+...++|+|.+....+.. . .+..++...+..+++++...|-++++++..+.+ ......+.|.
T Consensus 75 ~~~-~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 145 (277)
T 3e61_A 75 ENI-IENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIK 145 (277)
T ss_dssp HHH-HHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHH
T ss_pred hHH-HHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 222 34 5667799999875543211 1 556677777888888888889999999985533 4456688999
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
+++++.|+.+.. ...........+.. +.+ ..++++|+.. +...+..++++++++|+..|+-+-+.
T Consensus 146 ~~l~~~~~~~~~-~~~~~~~~~~~~~~-l~~--~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 146 YILDQQRIDYKM-LEATLLDNDKKFID-LIK--ELSIDSIICS-NDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHC---CEEE-EEGGGGGSHHHHHH-HHH--HHTCCEEEES-SHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCccc-eecCCCCHHHHHHH-hhc--CCCCCEEEEC-CcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999987654 11111011222222 222 2356776544 44567789999999998765544443
No 144
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.28 E-value=0.00062 Score=72.41 Aligned_cols=78 Identities=9% Similarity=-0.021 Sum_probs=53.9
Q ss_pred CcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec-eeeec---Ccceeeeecccccc
Q 002301 489 SEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD-IAIIT---NRTKMADFTQPYIE 564 (940)
Q Consensus 489 ~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~-~~~t~---~R~~~v~ft~p~~~ 564 (940)
...+.|+.+.+-+-+.++.|+++++. +. +....++..|.+|++|+++++ ..... +....+.+..++..
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl~v~~~--~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGLDVDIV--FP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTEEEEEE--CC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred CcccHHHHHHHHcChHHHcCCcEEEe--cC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 44567888888888888999875544 32 235589999999999999886 22222 33445666666666
Q ss_pred ccEEEEEecc
Q 002301 565 SGLVVVAPVR 574 (940)
Q Consensus 565 ~~~~~vv~~~ 574 (940)
.+..+++++.
T Consensus 86 ~~~~l~~~~~ 95 (302)
T 3ix1_A 86 PLNHVMFLAE 95 (302)
T ss_dssp CCEEEEEEGG
T ss_pred CCEEEEEECC
Confidence 6777777654
No 145
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.27 E-value=0.0063 Score=65.70 Aligned_cols=204 Identities=12% Similarity=0.066 Sum_probs=127.7
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCch
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAV 107 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~ 107 (940)
..-.||+++|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....++.++|.+||- |....
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 346799999864 333345667777777662 56654 4566667776666777778888887763 32222
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-CcchhhHHHHHH
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD-DHGRNGIAALGD 186 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~-~~g~~~~~~l~~ 186 (940)
. .....+...++|+|......+ . +.. .+..++..-+..+++++...|.+++++|.... .......+.+.+
T Consensus 131 ~--~~~~~l~~~~iPvV~~~~~~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 131 E--PFERILSQHALPVVYMMDLAD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp T--THHHHHHHTTCCEEEEESCCS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred H--HHHHHHhcCCCCEEEEeecCC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 2 334456678999998743221 1 222 56677777788888888888999999998764 234456788999
Q ss_pred HHhcCceeE---EEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 187 TLAAKRCRI---SFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 187 ~l~~~g~~v---~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
++++.|+.. .... ....+.++-...+.++.. .++++|+. ++...+..+++++++.|+..|+-+-+.
T Consensus 202 al~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 202 ALDAADCRDAGLEWLD--PQPSSMQMGADMLDRALAERPDCDALFC-CNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHTTCCCGGGEEEE--CSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHCCCCCCChheEe--cCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 999988721 1111 111233333344444432 35677654 444567789999999998766544333
No 146
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.26 E-value=0.0049 Score=66.19 Aligned_cols=205 Identities=9% Similarity=-0.051 Sum_probs=127.6
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cCCCchh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAVT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~ 108 (940)
..+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.+++.+|| .|..+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTDL--QYADDDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEEE--eeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 45799999975 333345567777777662 566554 44677888777788888888999876 4544444
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHH-------cCCeEEEEEEEcCC--cchh
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-------YGWREVIAIYVDDD--HGRN 179 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~-------~~w~~v~ii~~d~~--~g~~ 179 (940)
.......+...++|+|.+....+.. .. ....+..++...+..+++++.. .|-++++++..... ....
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~~--~~--~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRNS--GD--VSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCSC--TT--CCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--Cc--eeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 4455566778899999875543221 11 2234556777778888888766 68899999975433 3445
Q ss_pred hHHHHHHHHhcC---c-eeEEEee-----cCCCCCChhHHHHHHHHHhc-----CCCeEEEEEecCCcHHHHHHHHHHcC
Q 002301 180 GIAALGDTLAAK---R-CRISFKA-----PLSVEATEDEITDLLVKVAL-----TESRIIVVHTHYNRGPVVFHVAQYLG 245 (940)
Q Consensus 180 ~~~~l~~~l~~~---g-~~v~~~~-----~~~~~~~~~~~~~~l~~l~~-----~~~~viv~~~~~~~~~~~l~~a~~~g 245 (940)
..+.|++++++. | +.+.... ......+.+.-...+.++-. .++++|+ +.+...+..++++++++|
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~g 227 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLKGVG 227 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHHHcC
Confidence 678888888876 3 5543211 00111122222333333322 4566654 344456778999999999
Q ss_pred CCCCC
Q 002301 246 MLGTG 250 (940)
Q Consensus 246 ~~~~~ 250 (940)
+..|+
T Consensus 228 ~~vP~ 232 (330)
T 3uug_A 228 YGTKD 232 (330)
T ss_dssp CSSSS
T ss_pred CCCCC
Confidence 87653
No 147
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.25 E-value=0.029 Score=58.76 Aligned_cols=211 Identities=13% Similarity=-0.001 Sum_probs=120.9
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchh-H
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVT-S 109 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~-a 109 (940)
+||++.|.. ..+-.....+++.+.++. |+++.+....+..++..-.+....++.++|.+||= |..... .
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589998753 333334556666666654 45554432115566666555666777789998763 433322 2
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCC--CCCceEEecCChHHHHHHHHHHHHHc-C--CeEEEEEEEcCCc--chhhHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSL--QFPYFVRTTQSDQYQMAAIAEIVDHY-G--WREVIAIYVDDDH--GRNGIA 182 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~--~~p~~~r~~psd~~~~~ai~~~l~~~-~--w~~v~ii~~d~~~--g~~~~~ 182 (940)
..+ ..+...++|+|.+....+..... .-++.-.+..++..-+..+++++... | -+++++|...... .....+
T Consensus 75 ~~~-~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~ 153 (288)
T 1gud_A 75 MPV-ARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRN 153 (288)
T ss_dssp HHH-HHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHH
T ss_pred HHH-HHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHH
Confidence 333 34456799999875422110000 00110235567777777788887665 8 8999999865432 345678
Q ss_pred HHHHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEec
Q 002301 183 ALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIAT 256 (940)
Q Consensus 183 ~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 256 (940)
.|++++++. |+.+.....-. .+.++-...++++.+ .+++.|+. .+...+..+++++++.|+. .+...++.
T Consensus 154 Gf~~al~~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~-~dv~vvGf 226 (288)
T 1gud_A 154 GATEAFKKASQIKLVASQPAD--WDRIKALDVATNVLQRNPNIKAIYC-ANDTMAMGVAQAVANAGKT-GKVLVVGT 226 (288)
T ss_dssp HHHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHHHHHhCCCcEEEEeecCC--ccHHHHHHHHHHHHHhCCCceEEEE-CCCchHHHHHHHHHhcCCC-CCeEEEEe
Confidence 899999988 88765432111 233333334444332 24566544 3445677899999999974 33444443
No 148
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.15 E-value=0.014 Score=64.85 Aligned_cols=207 Identities=9% Similarity=0.060 Sum_probs=124.6
Q ss_pred CCceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCch
Q 002301 28 RPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (940)
Q Consensus 28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (940)
....-+||+++|.+..+-.....+++-+.++. |+.+.+...+... +....+..++|.+||-...
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~-- 85 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD-- 85 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT--
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC--
Confidence 44578899999866555455667777777664 4555555433221 1234456668888875222
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCc----chhhHHH
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH----GRNGIAA 183 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~----g~~~~~~ 183 (940)
...+...+...++|+|......+... ..+.+-.+..++..-+..+++.+...|-+++++|...... .....+.
T Consensus 86 -~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~G 162 (412)
T 4fe7_A 86 -DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYA 162 (412)
T ss_dssp -CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHH
T ss_pred -ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHH
Confidence 23345567778999998765432211 1233455667777888888899988999999999865443 5567889
Q ss_pred HHHHHhcCceeEEEeecCCC-CCChhHHHHHHHHH-hc-CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEE
Q 002301 184 LGDTLAAKRCRISFKAPLSV-EATEDEITDLLVKV-AL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~l~~l-~~-~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi 254 (940)
+.+++++.|+.......... ..+..+....+.++ +. .++++|+ +++...+..+++++++.|+..|+-+-+
T Consensus 163 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disv 235 (412)
T 4fe7_A 163 FRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCV 235 (412)
T ss_dssp HHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEE
T ss_pred HHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEE
Confidence 99999999876432221111 11222333333333 22 3566655 344456778999999999876554433
No 149
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.13 E-value=0.0059 Score=63.72 Aligned_cols=197 Identities=10% Similarity=-0.002 Sum_probs=127.2
Q ss_pred CceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCE-EEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTK-LKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~-l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
...-+||+++|.. ..+-.....+++.+.++. |++ +. +.++..++..-.+....++.++|.+||-.. .
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~ 76 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTALI--SFSTNSDVKKYQNAIINFENNNVDGIITSA-F 76 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECSSCCHHHHHHHHHHHHHTTCSEEEEEC-C
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEcc-h
Confidence 3457899999864 333334556666666652 566 44 456666777766667777788888876422 1
Q ss_pred hhHHHHHHhhccCCccEEeeecC-CCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSAT-DPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at-~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (940)
....+...++|+|..... .+ + +.+ .+..++..-+..+++++. .|-++++++..... ......+.
T Consensus 77 -----~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~G 143 (277)
T 3hs3_A 77 -----TIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEA 143 (277)
T ss_dssp -----CCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHH
T ss_pred -----HHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHH
Confidence 123356779999987543 22 1 234 667777777888888877 99999999986533 34566889
Q ss_pred HHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
|.+.+++.|+.+... ... .... ...+.++.+ .++++|+. .+...+..+++++++.|+..|+-+-+.
T Consensus 144 f~~~l~~~g~~~~~~-~~~-~~~~---~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 144 MTAEASKLKIDYLLE-ETP-ENNP---YISAQSALNKSNQFDAIIT-VNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHHHTTCEEEEE-ECC-SSCH---HHHHHHHHHTGGGCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCCCCCCCC-Ccc-CCch---HHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999999887654 333 1121 333444332 35666543 444567789999999998766544343
No 150
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.11 E-value=0.014 Score=62.86 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=122.7
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
..-+||+++|.. ..+-.....+++.+.++. |+.+.+.. +.. +..-......++.+++.+||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~--~~~-~~~~~~~~~~l~~~~vdGiIi~~~--- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVAE--ANS-VQAQDVVMESLISIQAAGIIHVPV--- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEEE--CCS-HHHHHHHHHHHHHHTCSEEEECCC---
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEEC--CCC-hHHHHHHHHHHHhCCCCEEEEcch---
Confidence 356799999864 333345567777777663 56666544 333 444445556666778988875333
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
...+...++|+|.+....+. +.+-.+..++..-+..+++++...|-+++++|..... ......+.|.+
T Consensus 129 ----~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ----VGSIAPEGIPMVQLTRGELG------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ----TTCCC-CCSCEEEECC----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ----HHHHhhCCCCEEEECccCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 34566779999987543321 1223455677777888888888889999999986543 34566889999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC-CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
++++.|+..... .. ..+.++-...+.++... .++.|+. ++...+..+++++++.|+..|+-+
T Consensus 199 al~~~g~~~~~~--~~-~~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 261 (333)
T 3jvd_A 199 AASIYGAEVTFH--FG-HYSVESGEEMAQVVFNNGLPDALIV-ASPRLMAGVMRAFTRLNVRVPHDV 261 (333)
T ss_dssp HHHHTTCEEEEE--EC-CSSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHCCCCEEEe--cC-CCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 999999872211 01 12334444444554333 3676654 444567789999999998765443
No 151
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.11 E-value=0.0083 Score=63.61 Aligned_cols=200 Identities=11% Similarity=0.090 Sum_probs=122.7
Q ss_pred ceEEEEEEeec------CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcC
Q 002301 30 SVVNIGALLSF------STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGP 103 (940)
Q Consensus 30 ~~i~IG~l~~~------~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp 103 (940)
..-+||+++|. +..+-.....+++.+.++. |+++.+ .++..++..-......+..++|.+||-.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTRM--TVSENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEEE--CCCSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 45689999997 2223334556666666663 555554 5555555554555556667789887742
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCc--chhhH
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH--GRNGI 181 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~--g~~~~ 181 (940)
...... .....+...++|+|...... .. +.+-.+..++..-+..+++++...|-+++++|..+... .....
T Consensus 91 ~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 163 (305)
T 3huu_A 91 YSLKDD-PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRS 163 (305)
T ss_dssp SCBTTC-HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHH
T ss_pred CCcCCc-HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHHH
Confidence 222222 33445667799999875432 11 22334567777778888899888899999999876443 44568
Q ss_pred HHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHH-hc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCe
Q 002301 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-AL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (940)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~ 251 (940)
+.|.+.+++.|+.+.. .+.. ..+.-...+.++ -+ .+++.|+. ++...+..+++++++.|+..|+-
T Consensus 164 ~Gf~~~l~~~g~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~~vP~d 231 (305)
T 3huu_A 164 VGFKQYCDDVKISNDC--VVIK--SMNDLRDFIKQYCIDASHMPSVIIT-SDVMLNMQLLNVLYEYQLRIPED 231 (305)
T ss_dssp HHHHHHHHHTTCCCCE--EEEC--SHHHHHHHC--------CCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHHHHcCCCccc--EEec--CcHHHHHHHHHhhhcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCcc
Confidence 8999999999976543 1111 111123333444 22 35666654 44456778999999999876543
No 152
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.06 E-value=0.045 Score=58.96 Aligned_cols=201 Identities=12% Similarity=0.004 Sum_probs=116.6
Q ss_pred CCCceEEEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcC
Q 002301 27 GRPSVVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGP 103 (940)
Q Consensus 27 ~~~~~i~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp 103 (940)
...++.+||++++-. ..+-.....|++.+.++.+ -++++.+.++..+.....+...+++++++.+||+.
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~ 93 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFTT 93 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEEC
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 345689999999732 2344455677777766652 23566666666555555667778888899999986
Q ss_pred CCchhHHHHHHhhccC-CccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH-HHc-CCeEEEEEEEcC-Ccchh
Q 002301 104 QDAVTSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHY-GWREVIAIYVDD-DHGRN 179 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~-~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l-~~~-~w~~v~ii~~d~-~~g~~ 179 (940)
.. ....++..++.++ ++|++-..... .. |.+..... +..++..++-.+ .+. +-++|++|...+ +....
T Consensus 94 g~-~~~~~~~~vA~~~Pdv~fv~id~~~---~~---~Nv~sv~~-~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~ 165 (356)
T 3s99_A 94 SF-GYMDPTVKVAKKFPDVKFEHATGYK---TA---DNMSAYNA-RFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQ 165 (356)
T ss_dssp SG-GGHHHHHHHHTTCTTSEEEEESCCC---CB---TTEEEEEE-CHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHH
T ss_pred CH-HHHHHHHHHHHHCCCCEEEEEeccc---cC---CcEEEEEe-chhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHH
Confidence 43 3445677777775 78888653321 11 23322222 233444444332 111 247999998543 23344
Q ss_pred hHHHHHHHHhcCceeEEEeecCCCC-CChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 180 GIAALGDTLAAKRCRISFKAPLSVE-ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
....|.+.++..+..+.....+... .+...-....+.+-+.++|+|+.+.... .++++|++.|.
T Consensus 166 ~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 166 GINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 5778888888766443322222211 1223334455555567899887776543 68899998874
No 153
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.05 E-value=0.037 Score=58.93 Aligned_cols=206 Identities=11% Similarity=0.004 Sum_probs=115.1
Q ss_pred ceEEEEEEee---cCC-cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCC
Q 002301 30 SVVNIGALLS---FST-NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD 105 (940)
Q Consensus 30 ~~i~IG~l~~---~~~-~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 105 (940)
++.+||+++| .+. .+-.....|++.+.++. |+++.+.. +..+. ........++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~~--~~~~~-~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYVT--ASTDA-EYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEEE--CCSGG-GHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEEe--CCCHH-HHHHHHHHHHHcCCCEEEECCh
Confidence 4578999997 222 33344456666666553 55655433 32222 2234556677778888886432
Q ss_pred chhHHHHHHhhccC-CccEEeeecCCCCCCCCCCCceEEecCChHHHHHHH----HHHHHHcCC-eEEEEEEEc-CCcch
Q 002301 106 AVTSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAI----AEIVDHYGW-REVIAIYVD-DDHGR 178 (940)
Q Consensus 106 s~~a~~va~~~~~~-~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai----~~~l~~~~w-~~v~ii~~d-~~~g~ 178 (940)
.. ...+..++..+ ++|+|......+ . .+.+-.... |..++..+ +..+...|- ++|++|... .....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 22 22344555543 899987644221 0 122222333 34444444 466666776 899999754 33345
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCC-ChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEA-TEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
...+.|.+.+++.|..+.....+.... +...-....+++.+.++++|+.. ....+..++++++++|+. |.-+++.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 668889999988775433222222111 22223334445444578876544 345677889999998877 5545544
No 154
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.00 E-value=0.031 Score=60.41 Aligned_cols=204 Identities=13% Similarity=0.044 Sum_probs=117.2
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCC-HHHHHHHHHHHHhcCcEEEE--cCCC
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHS-GFLALAEALHLMEGQTVAII--GPQD 105 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~-~~~a~~~a~~li~~~v~aii--Gp~~ 105 (940)
...+||++.|.- ..+-.....+++.+.++ .|+++.+.. +..+ +..-......++.++|.+|| +|..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~ 129 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVSM--VERSGVEACKTAVHNLLAQRVSGLIINYPLD 129 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEEE--CCSSSHHHHHHHHHHHHTTTCSCEEEESCCC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEEe--CCCCcHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 356899999853 22223345566555554 266766543 3333 33334445567777787765 4543
Q ss_pred chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHH
Q 002301 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (940)
Q Consensus 106 s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (940)
... .+...+...++|+|...... ....+ .+..++..-+..+++++...|.+++++|..+.. ......+.
T Consensus 130 ~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 130 DQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp HHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred Chh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 322 22233445789999865321 11223 344566666777778877789999999986533 24456788
Q ss_pred HHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
|.+.+++.|+.+.... ....+..+-...+.++.. ..++.|+.. +...+..+++++++.|+..|+-+-+.
T Consensus 201 f~~al~~~gi~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 201 WHKYLTRNQIQPIAER--EGDWSAMSGFQQTMQMLNEGIVPTAMLVA-NDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHTTCCCSEEE--ECCSSHHHHHHHHHHHHHTTCCCSEEEES-SHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHcCCCccccc--cCCCChHHHHHHHHHHHhCCCCCCEEEEC-ChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 9999999997643221 111222222233333332 346666543 34567789999999998766544443
No 155
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=96.89 E-value=0.12 Score=54.19 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=109.1
Q ss_pred eEEEEEEeec--CC-cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCch
Q 002301 31 VVNIGALLSF--ST-NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (940)
Q Consensus 31 ~i~IG~l~~~--~~-~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (940)
+.+||+++|- +. .+-.....+++.+.++. |+++.+ .++..+..........++++++.+||......
T Consensus 5 ~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~~ 74 (296)
T 2hqb_A 5 GGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVVL--EEGVNSEQKAHRRIKELVDGGVNLIFGHGHAF 74 (296)
T ss_dssp -CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEEE--ECCCCSHHHHHHHHHHHHHTTCCEEEECSTHH
T ss_pred CcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEEE--EeCCCCHHHHHHHHHHHHHCCCCEEEEcCHhH
Confidence 5689999973 22 34445566776666652 555543 44444544444556667778999999854332
Q ss_pred hHHHHHHhhccC-CccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHH-HHHHHc-CCeEEEEEEEcCCcchhhHHHH
Q 002301 108 TSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIA-EIVDHY-GWREVIAIYVDDDHGRNGIAAL 184 (940)
Q Consensus 108 ~a~~va~~~~~~-~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~-~~l~~~-~w~~v~ii~~d~~~g~~~~~~l 184 (940)
...+..++..+ ++|+|......+ . +.+-.....+. ++..++ .++.++ +-++|++|....... ..+.|
T Consensus 75 -~~~~~~~~~~~p~~p~v~id~~~~---~---~~~~~v~~d~~-~g~~lag~la~~l~~~~~Ig~i~g~~~~~--r~~Gf 144 (296)
T 2hqb_A 75 -AEYFSTIHNQYPDVHFVSFNGEVK---G---ENITSLHFEGY-AMGYFGGMVAASMSETHKVGVIAAFPWQP--EVEGF 144 (296)
T ss_dssp -HHHHHTTTTSCTTSEEEEESCCCC---S---SSEEEEEECCH-HHHHHHHHHHHHTCSSSEEEEEESCTTCH--HHHHH
T ss_pred -HHHHHHHHHHCCCCEEEEEecCcC---C---CCEEEEEechH-HHHHHHHHHHHhhccCCeEEEEcCcCchh--hHHHH
Confidence 23455566554 789987643211 1 22222333333 333333 333342 568999998643322 78889
Q ss_pred HHHHhcCceeEEEeecCCCCC-ChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcC
Q 002301 185 GDTLAAKRCRISFKAPLSVEA-TEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLG 245 (940)
Q Consensus 185 ~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g 245 (940)
.+.+++.|.. .....+.... +...-....+++.+.++++|+ ++....+..+++++++.|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 145 VDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 9999988864 2221122111 222333444555555788755 444566778999999988
No 156
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.84 E-value=0.0021 Score=68.09 Aligned_cols=203 Identities=10% Similarity=0.040 Sum_probs=126.3
Q ss_pred ceEEEEEEeecC--CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCch
Q 002301 30 SVVNIGALLSFS--TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (940)
Q Consensus 30 ~~i~IG~l~~~~--~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (940)
..-+||+++|.. ..+......+++.+.++. |+++.+ .++..++....+....++.++|.+||-.....
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTILI--ANTGGSSEREVEIWKMFQSHRIDGVLYVTMYR 81 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 356799999875 233325677777777763 566654 45566776666666777778888776322222
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCc--chhhHHHHH
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH--GRNGIAALG 185 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~--g~~~~~~l~ 185 (940)
.. ....+...++|+|......+.. . .+..+..++..-+..+++++...|-+++++|...... .....+.+.
T Consensus 82 ~~--~~~~~~~~~iPvV~~~~~~~~~--~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (301)
T 3miz_A 82 RI--VDPESGDVSIPTVMINCRPQTR--E---LLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFR 154 (301)
T ss_dssp EE--CCCCCTTCCCCEEEEEEECSST--T---SSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHH
T ss_pred cH--HHHHHHhCCCCEEEECCCCCCC--C---CCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHH
Confidence 11 3345667799999876543211 0 2234567777778888899888999999999865443 445678899
Q ss_pred HHHhcCceeEE----Eee---cCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 186 DTLAAKRCRIS----FKA---PLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 186 ~~l~~~g~~v~----~~~---~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
+++++.|+.+. ... .+...... ....+.++.. .+++.|+.. +...+..+++++++.|+..|+-+
T Consensus 155 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~~-~d~~A~g~~~al~~~g~~vP~di 227 (301)
T 3miz_A 155 RTTSEFGLTENDLSISLGMDGPVGAENNY--VFAAATEMLKQDDRPTAIMSG-NDEMAIQIYIAAMALGLRIPQDV 227 (301)
T ss_dssp HHHHHHTCCGGGEEEEECEESSTTSCEEC--HHHHHHHHHTSTTCCSEEEES-SHHHHHHHHHHHHTTTCCHHHHC
T ss_pred HHHHHcCCCCCcceEEEcCCCCcCccccH--HHHHHHHHHcCCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCCCCe
Confidence 99999887532 221 22211111 0123333322 356666544 34567789999999998755433
No 157
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.55 E-value=0.0019 Score=55.82 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeee
Q 002301 598 FFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSIL 675 (940)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~L 675 (940)
.+++.+.+++.+|+..+ +++..++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+++.+
T Consensus 18 ~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~ 93 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDF 93 (103)
T ss_dssp HHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTG
T ss_pred HHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556677777643 3344578999999999999776 33799999999999999999999999999999888
Q ss_pred eecc
Q 002301 676 TVQK 679 (940)
Q Consensus 676 t~~~ 679 (940)
+...
T Consensus 94 ~~~~ 97 (103)
T 2k1e_A 94 VRRE 97 (103)
T ss_dssp GGHH
T ss_pred HHHH
Confidence 7643
No 158
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.52 E-value=0.0041 Score=66.67 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=43.7
Q ss_pred CCCCChhHhhhCCCCeEEE-eCchHHH---HHHhhhCCCccC--cccCCCHHHHHHHhhcCCCCCceEEEEech
Q 002301 682 SPIKGIDSLRSSNYPIGYQ-VNSFARN---YLVDELNIDESR--LVPLNSPEEYAKALKDGPHKGGVAAVVDDR 749 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~-~gs~~~~---~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~ 749 (940)
.+|++++||+ ++++++. .|+.... .+.+..+..... .+.|....+.+.+|.. |++|+++...
T Consensus 136 s~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~----G~vDa~~~~~ 203 (327)
T 4ddd_A 136 SNISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCD----NKIDVMVDVI 203 (327)
T ss_dssp SSCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHT----TSCSBEEEEE
T ss_pred CCCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHc----CCCCEEEEcc
Confidence 5789999998 7788884 5654322 222445554332 4678899999999999 8999988743
No 159
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.45 E-value=0.011 Score=63.14 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=55.3
Q ss_pred CCCCChhHhhhCCCCeEEEe-CchHHH---HHHhhhCCCc-cCcccCCCHHHHHHHhhcCCCCC----ceEEEEechhhH
Q 002301 682 SPIKGIDSLRSSNYPIGYQV-NSFARN---YLVDELNIDE-SRLVPLNSPEEYAKALKDGPHKG----GVAAVVDDRAYA 752 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~-gs~~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~g----~~~a~~~~~~~~ 752 (940)
++|++++|| ++||+.. |+.... .+.++.+... .+++.+.+..+...+|.+ | .+||++.+....
T Consensus 110 ~~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~----G~~~~~vDa~~~ep~~~ 181 (321)
T 2x7q_A 110 DDVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNL----KDGVEGSDAFMWEYFTS 181 (321)
T ss_dssp TTCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTT----CTTSCCCSEEEEEHHHH
T ss_pred CCCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHc----CCCccceEEEEecCccc
Confidence 389999999 5799986 654332 2223334432 356667788899999999 8 899987765544
Q ss_pred HHHHhcCCcEEEeCCccccCc-ceeecCCC
Q 002301 753 ELFLSTRCEFSIVGQVFTKNG-WGFAFPRD 781 (940)
Q Consensus 753 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~k~ 781 (940)
..... ...+..+.+.....+ .+++++++
T Consensus 182 ~~~~~-~g~~~~~~d~~~~~~~~~l~~~~~ 210 (321)
T 2x7q_A 182 KKYYD-NHEIKQIDQIYTPWSSWVVATSSD 210 (321)
T ss_dssp HHHHH-TTSEEEEEEEECSSCSEEEEEEHH
T ss_pred hhhcc-CCceEEccccCCCCceEEEEEcHH
Confidence 43333 224554444332222 35666654
No 160
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.20 E-value=0.13 Score=54.68 Aligned_cols=216 Identities=14% Similarity=0.094 Sum_probs=126.2
Q ss_pred ceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCC--C-C--CEEEEEEecCCCCHH-----HHHHHHHHHHhc-CcE
Q 002301 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTL--G-G--TKLKLQMQDCNHSGF-----LALAEALHLMEG-QTV 98 (940)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL--~-g--~~l~~~~~D~~~~~~-----~a~~~a~~li~~-~v~ 98 (940)
.+.+||++.+--+ .+.....+++..+++-|..+..- . | ..++++++++-.|++ .+++...++..+ ++.
T Consensus 11 ~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gyk 89 (371)
T 3qi7_A 11 DDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEVQ 89 (371)
T ss_dssp CCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTEE
T ss_pred CCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCCe
Confidence 4699998866433 34577899999999998754321 0 1 123455444333332 345555555555 777
Q ss_pred EEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC--CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-
Q 002301 99 AIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS--LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD- 175 (940)
Q Consensus 99 aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~--~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~- 175 (940)
+||.-..........+.+.+.+++.|-+.+....-.. ..+.. +.+..++..-+..+++.+...|-++++.|.....
T Consensus 90 ~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~~ 168 (371)
T 3qi7_A 90 AIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDDL 168 (371)
T ss_dssp EEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTGG
T ss_pred EEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEeccccc
Confidence 7775433322233345677667777655543221100 00111 2455566666666778999999999999987543
Q ss_pred -c--chhhHHHHHHHHhcCceeEEEeecCCCCCChhH---HHHHHHH-----Hhc-CCCeEEEEEecCCcHHHHHHHHHH
Q 002301 176 -H--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDE---ITDLLVK-----VAL-TESRIIVVHTHYNRGPVVFHVAQY 243 (940)
Q Consensus 176 -~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~---~~~~l~~-----l~~-~~~~viv~~~~~~~~~~~l~~a~~ 243 (940)
+ .....+.+++++++.|+.+.....-.+ ..+.. ...+|.+ ++. ..++. |++++...+..+++++.+
T Consensus 169 ~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~-t~e~G~~~a~~lL~~~~~~~~~~~~~~TA-IFatND~mAiG~ikal~e 246 (371)
T 3qi7_A 169 KDVNIAKRLEMIKETCKNIGLPFVQVNTPNI-NTEEDKNKVKQFLNEDIEKQVKKYGKDIN-VFGVNEYMDEVILTKALE 246 (371)
T ss_dssp GSHHHHHHHHHHHHHHHHTTCCEEEEEECCC-SSTHHHHHHHHHHHHHHHHHHHHHCSCCE-EEESSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCCceeecCCCC-chHHHHHHHHHHHhccccchhhccCCCcE-EEECCHHHHHHHHHHHHH
Confidence 2 333678899999999998765432221 12222 2222221 122 23344 455556788899999999
Q ss_pred cCCCCC
Q 002301 244 LGMLGT 249 (940)
Q Consensus 244 ~g~~~~ 249 (940)
.|...|
T Consensus 247 ~Gi~VP 252 (371)
T 3qi7_A 247 LKYIVA 252 (371)
T ss_dssp HCCBBC
T ss_pred cCCccC
Confidence 997654
No 161
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.10 E-value=0.08 Score=57.54 Aligned_cols=206 Identities=10% Similarity=0.038 Sum_probs=115.9
Q ss_pred ceEEEEEEeecCCc--chhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCch
Q 002301 30 SVVNIGALLSFSTN--VGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (940)
Q Consensus 30 ~~i~IG~l~~~~~~--~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 107 (940)
..-.||+++|.... ........+..++++.=+ |+.+.+...+...+. .-......+..++|.+||-.....
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~~ 139 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVAK 139 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCCT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCCC
Confidence 35679999986421 112233334444444311 577777665533321 122334456666777665322222
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc--------------
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD-------------- 173 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d-------------- 173 (940)
.... ...+...++|+|...... .....+ .+..++..-+..+++++...|-+++++|...
T Consensus 140 ~~~~-~~~l~~~~iPvV~i~~~~---~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~ 212 (366)
T 3h5t_A 140 GDPH-IDAIRARGLPAVIADQPA---REEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRER 212 (366)
T ss_dssp TCHH-HHHHHHHTCCEEEESSCC---SCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHH
T ss_pred ChHH-HHHHHHCCCCEEEECCcc---CCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccccc
Confidence 2222 344556699999875422 112223 3557777778888899888999999999832
Q ss_pred -----CCcchhhHHHHHHHHhcCceeEEEeecC-CCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcC
Q 002301 174 -----DDHGRNGIAALGDTLAAKRCRISFKAPL-SVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLG 245 (940)
Q Consensus 174 -----~~~g~~~~~~l~~~l~~~g~~v~~~~~~-~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g 245 (940)
........+.|.+++++.|+.+.....+ ....+.++-...+.++.. ..+++|+.. +...+..+++++++.|
T Consensus 213 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-nD~~A~g~~~al~~~G 291 (366)
T 3h5t_A 213 LENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLCT-VDALAFGVLEYLKSVG 291 (366)
T ss_dssp HHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEES-SHHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEEC-CcHHHHHHHHHHHHcC
Confidence 2334566889999999998753210000 001223333334444322 356766543 3456778999999999
Q ss_pred CCCCC
Q 002301 246 MLGTG 250 (940)
Q Consensus 246 ~~~~~ 250 (940)
+..|+
T Consensus 292 ~~vP~ 296 (366)
T 3h5t_A 292 KSAPA 296 (366)
T ss_dssp CCTTT
T ss_pred CCCCC
Confidence 87654
No 162
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.58 E-value=0.023 Score=63.21 Aligned_cols=103 Identities=9% Similarity=0.182 Sum_probs=61.3
Q ss_pred hHhhhCCCCeEEE-eCchHHHHHH---hhhCCCc---cCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC
Q 002301 688 DSLRSSNYPIGYQ-VNSFARNYLV---DELNIDE---SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC 760 (940)
Q Consensus 688 ~dL~~~~~~i~~~-~gs~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 760 (940)
+||. |++|++. .++....+++ .+.++.. -+++.+ ...+...+|.+ |++|+++...++......+..
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~----G~vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKV----NAMESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHHHHHTS
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHc----CCCCEEEeCCCHHHHHHHcCC
Confidence 6776 8899998 5765443332 2334432 345556 45788999999 899999988777666555543
Q ss_pred cE-EEe-CCccccCc-ceeecCCC----Cc-----chHHHHHHHHhccc
Q 002301 761 EF-SIV-GQVFTKNG-WGFAFPRD----SP-----LAVDISTAILKLSE 797 (940)
Q Consensus 761 ~l-~~~-~~~~~~~~-~~~~~~k~----sp-----l~~~~~~~il~l~e 797 (940)
.. ... .+.....+ ..++++++ .| +...+.++...+.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 22 222 23222223 45677654 34 44456666666665
No 163
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.53 E-value=0.12 Score=50.81 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=55.4
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... + ...+-.+++..+.++.+ .++++... ++...+.++|.+|++|+++....
T Consensus 4 g~l~Ig~~~~--~-----------~~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 62 (219)
T 3jv9_A 4 GAFKLGLIFT--V-----------APYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAEP 62 (219)
T ss_dssp CCEEEEEETT--T-----------HHHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEESS
T ss_pred CcEEEEEcch--h-----------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcCC
Confidence 4688888731 1 12455678888888764 24455554 45889999999999999987432
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
.. ...+. ..++....+++++++..
T Consensus 63 ~~---~~~~~-~~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 63 FQ---EPGIV-TEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEEETTC
T ss_pred CC---CCCee-EEEeeeceEEEEEeCCC
Confidence 22 22232 45677888899988764
No 164
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=95.51 E-value=0.0088 Score=53.36 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=59.6
Q ss_pred HHHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeee
Q 002301 600 LAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 677 (940)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 677 (940)
++.+.+.|.+|+..+ ++...++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677776442 3334578999999999999776 4479999999999999999999999999999988765
Q ss_pred c
Q 002301 678 Q 678 (940)
Q Consensus 678 ~ 678 (940)
.
T Consensus 117 ~ 117 (122)
T 2ih3_C 117 R 117 (122)
T ss_dssp H
T ss_pred H
Confidence 4
No 165
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.37 E-value=0.24 Score=49.92 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=87.9
Q ss_pred HHHHHHHhcCcEEEEcCCCchhH--------HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHH
Q 002301 87 AEALHLMEGQTVAIIGPQDAVTS--------HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI 158 (940)
Q Consensus 87 ~~a~~li~~~v~aiiGp~~s~~a--------~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~ 158 (940)
+++..|...++.+|+-+-++... .....+.+..++|+++. ..++++.
T Consensus 57 ~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~a 111 (240)
T 3ixl_A 57 DHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNG 111 (240)
T ss_dssp HHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHH
T ss_pred HHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHH
Confidence 34455555589888764444332 34455656678998862 4667778
Q ss_pred HHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCC-------CChhHHHHHHHH-H-hcCCCeEEEEEe
Q 002301 159 VDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE-------ATEDEITDLLVK-V-ALTESRIIVVHT 229 (940)
Q Consensus 159 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~-l-~~~~~~viv~~~ 229 (940)
++..|-++|+++.+ |.....+.+++.+++.|+++......... .+...+...+++ + ...++|.||+.|
T Consensus 112 l~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~C 188 (240)
T 3ixl_A 112 LRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSS 188 (240)
T ss_dssp HHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEEC
T ss_pred HHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 88899999999974 77777888999999999998765544321 245677888888 7 778899999998
Q ss_pred cCCcHHHHHHH
Q 002301 230 HYNRGPVVFHV 240 (940)
Q Consensus 230 ~~~~~~~~l~~ 240 (940)
..-....+..+
T Consensus 189 T~l~~l~~i~~ 199 (240)
T 3ixl_A 189 GGLLTLDAIPE 199 (240)
T ss_dssp TTSCCTTHHHH
T ss_pred CCCchhhhHHH
Confidence 76444434443
No 166
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.27 E-value=0.016 Score=53.23 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeee
Q 002301 602 VGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 677 (940)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 677 (940)
.+.+++.+|+.. .++...++.+++||++.++...| .-.|.+..+|++.++|.++++.+.+...+.+.+.+..
T Consensus 22 ~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 22 GSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666543 23334578899999999998776 4479999999999999999999999999999887743
No 167
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=95.18 E-value=0.13 Score=50.68 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=55.7
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... + ...+..+++..+.++.+ .++++... ++...++.+|.+|++|+++....
T Consensus 8 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~~~ 66 (222)
T 4ab5_A 8 GELRIAVECH--T-----------CFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVSEA 66 (222)
T ss_dssp EEEEEECCCT--T-----------THHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEESCC
T ss_pred ceEEEEEehH--H-----------HHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEecCC
Confidence 5789988731 1 12455678888888875 34455554 45678999999999999987432
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
.. ...+. ..++....+++++++..
T Consensus 67 ~~---~~~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 67 EK---QNGIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEECTTS
T ss_pred CC---cCCeE-EEEeecCcEEEEecCCC
Confidence 22 22232 45777888888887664
No 168
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=94.99 E-value=0.091 Score=52.37 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=57.3
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... + ...+..+++..+.+..+ .++++... ++...+..+|.+|++|+++....
T Consensus 11 g~l~Ig~~~~--~-----------~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 69 (232)
T 3ho7_A 11 GRLNIAVLPT--I-----------APYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIASK 69 (232)
T ss_dssp EEEEEEECTT--T-----------HHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESSC
T ss_pred eeEEEEeccc--c-----------chhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEcCC
Confidence 5789988731 1 22456778888888875 34566654 55889999999999999987443
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
... ..+. ..++....+++++++..
T Consensus 70 ~~~---~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 70 AET---EGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp CCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCC---CCeE-EEEecccCEEEEEcCCC
Confidence 222 2232 46777888899987664
No 169
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=94.99 E-value=0.017 Score=53.76 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=60.5
Q ss_pred HHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeeec
Q 002301 601 AVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQ 678 (940)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 678 (940)
+.+.+++.+|+..+ ++...++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+..++.+++.++..
T Consensus 65 ~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 65 AGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445677776542 3334578999999999999776 33799999999999999999999999999999988765
Q ss_pred cc
Q 002301 679 KL 680 (940)
Q Consensus 679 ~~ 680 (940)
..
T Consensus 141 ~~ 142 (155)
T 2a9h_A 141 EQ 142 (155)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 170
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.79 E-value=0.5 Score=47.26 Aligned_cols=84 Identities=11% Similarity=0.113 Sum_probs=57.5
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
..+||||+... -...+..+++..+.++.+ .+++.... ++...++++|.+|++|+++...
T Consensus 18 ~g~l~Ig~~~~-------------~~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 76 (241)
T 3oxn_A 18 DQTFTIATTDY-------------AMQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICRP 76 (241)
T ss_dssp CCEEEEEECSH-------------HHHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEECC
T ss_pred CceEEEEechH-------------HHHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEecC
Confidence 45799998731 123456788888888875 34455554 4578999999999999998733
Q ss_pred eeecCcceeeeeccccccccEEEEEeccC
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
. .....+. ..++....+++++++..
T Consensus 77 ~---~~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 77 T---GPVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp S---SCCTTEE-EEEEECCCEEEEEETTS
T ss_pred C---CCCccce-eEEeecccEEEEEeCCC
Confidence 2 2222333 46677888999988765
No 171
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.51 E-value=0.02 Score=59.73 Aligned_cols=99 Identities=16% Similarity=-0.039 Sum_probs=56.4
Q ss_pred hHhhhCCCCeEEE-eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEec-hhhHHHHHhcCCcEEEe
Q 002301 688 DSLRSSNYPIGYQ-VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDD-RAYAELFLSTRCEFSIV 765 (940)
Q Consensus 688 ~dL~~~~~~i~~~-~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~-~~~~~~~~~~~~~l~~~ 765 (940)
+||. |++||+. .++....+++..+. +.+++ +.+..+...++.+ |++||++.. .+... +.+. ++..+
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l~--~~~~~-~~~~~~~~~al~~----G~vDa~~~~~~~~~~-~~~~--g~~~~ 166 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAVE--DFEPV-EMPFDRIIQAVLD----EEVDAGLLIHEGQIT-YADY--GLKCV 166 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHCS--SCEEE-ECCGGGHHHHHHT----TSSSEEEECSGGGGT-GGGG--TCEEE
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHhc--cCceE-ecCHHHHHHHHHc----CCCCEEEEechHHhH-HHhc--CCeEe
Confidence 7787 8999996 45544433432222 12343 3356789999999 899998744 34443 2222 22222
Q ss_pred CC---c----c-ccCc-ceeecCCC-Cc-chHHHHHHHHhcccc
Q 002301 766 GQ---V----F-TKNG-WGFAFPRD-SP-LAVDISTAILKLSEN 798 (940)
Q Consensus 766 ~~---~----~-~~~~-~~~~~~k~-sp-l~~~~~~~il~l~e~ 798 (940)
.+ . . .+.+ .+++++++ .| +.+.|.+++.+..+.
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 167 LDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp EEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 11 0 0 1112 35778888 56 777877777766544
No 172
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=93.56 E-value=0.046 Score=49.77 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=49.2
Q ss_pred CCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeeec
Q 002301 623 RQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQ 678 (940)
Q Consensus 623 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 678 (940)
.++.+++|+++.++..-| .-.|.+..+|++.++|+++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999998776 44799999999999999999999999999999887654
No 173
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=93.47 E-value=0.16 Score=53.65 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=40.7
Q ss_pred CCCCChhHhhhCCCCeEE-EeCchHHHHH---HhhhCCCccCc--ccCCCHHHHHHHhhcCCCCCceEEEEec
Q 002301 682 SPIKGIDSLRSSNYPIGY-QVNSFARNYL---VDELNIDESRL--VPLNSPEEYAKALKDGPHKGGVAAVVDD 748 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~-~~gs~~~~~l---~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~~~a~~~~ 748 (940)
.++++++||. ++++++ ..|+.....+ .+..+.....+ +.+.+..+.+.++.. |++|+.+..
T Consensus 121 ~~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~----G~vda~~~~ 187 (314)
T 1us5_A 121 AGIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQD----KRADALFYT 187 (314)
T ss_dssp SSCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHT----TSCSEEEEE
T ss_pred CCCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHc----CCccEEEEc
Confidence 4688999998 777877 4566443322 23344443333 356678899999998 889988865
No 174
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=92.91 E-value=0.59 Score=48.76 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=53.9
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+|+||++.. + ...+..+++..+.++.+ .++++... ++...++.+|.+|++|+++..-.
T Consensus 95 g~l~i~~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 153 (306)
T 3fzv_A 95 GQIDIGCFET--V-----------APLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLYEH 153 (306)
T ss_dssp EEEEEEEEGG--G-----------HHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEECSS
T ss_pred ceEEEEechh--h-----------hHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEecc
Confidence 5799998731 1 23456678888888875 34455554 45889999999999999986322
Q ss_pred eecCcceeeeeccccc-cccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYI-ESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~-~~~~~~vv~~~~ 575 (940)
.....+. ..|+. ...+++++++..
T Consensus 154 ---~~~~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 154 ---DLDSTIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp ---SCCTTEE-EEESSCCBCCEEEEETTC
T ss_pred ---ccccccc-eeeeeeccccEEEecCCC
Confidence 1222232 34555 667777777654
No 175
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=92.08 E-value=0.011 Score=55.93 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeeec
Q 002301 620 PPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQ 678 (940)
Q Consensus 620 ~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 678 (940)
+...++..++||++.++...| .-.|.+..+|++.++|.++++++.+...+.+++.++..
T Consensus 63 ~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 63 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp CCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred cccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578899999999998776 44799999999999999999999999999999998754
No 176
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=91.57 E-value=0.54 Score=50.37 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=41.2
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHH---HhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHH
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYL---VDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL 754 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~ 754 (940)
+.+++++||. |++||+. ++....++ ..+.+.....+.......+...++.+ |.+||.+...++...
T Consensus 101 ~~~~~~~dLk--GK~ig~~-~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~----G~vDa~~~~~p~~~~ 169 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILE----GTIDCGIGIECIQQV 169 (342)
T ss_dssp SCCSSGGGGT--TCEEEES-SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHH----TSSSEEEEETTTHHH
T ss_pred cccCCHHHhC--CCEEEec-CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHc----CCCCEEEEeccchHH
Confidence 5677899998 9999986 44333222 23445544433333334456678888 899998876665443
No 177
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=91.43 E-value=0.24 Score=48.86 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=56.9
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... ....+-.+++..+.++.+ .++++... ++...++++|.+|++|+++....
T Consensus 5 g~lrIg~~~~-------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 63 (219)
T 1i6a_A 5 GPLHIGLIPT-------------VGPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILALV 63 (219)
T ss_dssp EEEEEEECTT-------------THHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEECC
T ss_pred eEEEEEeccc-------------hhhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEecCC
Confidence 4689988631 123456778888888886 45566664 56899999999999999986321
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
.....+. ..|+....+++++++..
T Consensus 64 ---~~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 64 ---KESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp ---GGGTTSE-EEEEEEEEEEEEEETTS
T ss_pred ---CCCCCcc-eeeeecccEEEEEcCCC
Confidence 1122233 35777888898888764
No 178
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=91.26 E-value=0.69 Score=49.93 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=43.8
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhH
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYA 752 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~ 752 (940)
.+|++++||+ |++|.+. +......+ +.++.. .++. ...|...+|++ |.+|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa~---pv~~-~~~e~~~ALq~----G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGAS---TVLL-PGGEVYPALER----GVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTCE---EECC-CGGGHHHHHHT----TSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCCe---eeec-ChHHHHHHHHc----CCcceeecCCcch
Confidence 6899999999 9999888 55445555 445532 3344 56789999999 8999998766655
No 179
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=91.01 E-value=0.17 Score=41.24 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=45.0
Q ss_pred CceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeee
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSIL 675 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~L 675 (940)
++.+++|+++.++...+ .-.|.+..+|++.++|.++++.+.+...+++.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999998776 44799999999999999999999998888876654
No 180
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=90.72 E-value=3.8 Score=40.41 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=55.9
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... -...+-..++..+.++.+ .++++... ++...++.+|.+|++|+++....
T Consensus 30 g~l~Ig~~~~-------------~~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 88 (238)
T 2hxr_A 30 GSLRIAVTPT-------------FTSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFAP 88 (238)
T ss_dssp -CEEEEECHH-------------HHTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEESS
T ss_pred CeEEEeechh-------------hHHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcCC
Confidence 4699998621 123456678888888886 45566665 45788999999999999986321
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
. ....+. +.++....+++++++..
T Consensus 89 ~---~~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 89 V---HSPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp C---CCTTEE-EEEEEEEEEEEEEETTS
T ss_pred C---Ccccce-eeeeccCcEEEEEcCCC
Confidence 1 122233 35777888888888654
No 181
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=90.65 E-value=0.095 Score=44.36 Aligned_cols=58 Identities=12% Similarity=0.296 Sum_probs=50.3
Q ss_pred CceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeeecccc
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLS 681 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 681 (940)
++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+++++.++.++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 57899999999998776 34799999999999999999999999999999888766543
No 182
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=90.64 E-value=2 Score=41.47 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=55.2
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... . ...+-.+++..+.++.+ .++++... ++...+..++.+|++|+++...
T Consensus 5 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~~- 62 (209)
T 2ql3_A 5 GPIAVGCYPA--L-----------GPTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVYD- 62 (209)
T ss_dssp EEEEEEECGG--G-----------TTTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEES-
T ss_pred eeEEEeechh--h-----------hhhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEec-
Confidence 4689988631 1 12455688888888885 45566654 5588999999999999998632
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
......+. +.++....+++++++..
T Consensus 63 --~~~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 63 --LDLSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp --SSCCTTEE-EEEEEEECCEEEEETTC
T ss_pred --CCCCCCce-EEEeecCceEEEEeCCC
Confidence 11112232 35677788888887653
No 183
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=90.62 E-value=3 Score=43.33 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=53.9
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec--
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD-- 545 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~-- 545 (940)
.+||||+... + ...+..+++..+.++.+ .++++... ++..+++..|.+|++|+++..
T Consensus 101 ~~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 159 (310)
T 2esn_A 101 RTFVFAATDY--T-----------AFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGYDE 159 (310)
T ss_dssp CEEEEECCHH--H-----------HHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEECCS
T ss_pred ceEEEEeChH--H-----------HHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEecCc
Confidence 5799998621 1 12455677888888775 34566654 345678899999999999874
Q ss_pred -eeeecCcceeeeeccccccccEEEEEeccC
Q 002301 546 -IAIITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 546 -~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
.... ...+. ..|+....+++++++..
T Consensus 160 ~~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 160 EHERL---PEGIQ-AHDWFADRYVVVARRDH 186 (310)
T ss_dssp TTCCC---CTTEE-EEEEEEECEEEEEESSC
T ss_pred ccccC---CcCcc-eeeeeccceEEEEeCCC
Confidence 2111 12222 35677788888887654
No 184
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=90.61 E-value=3.3 Score=42.38 Aligned_cols=125 Identities=18% Similarity=0.087 Sum_probs=79.7
Q ss_pred HHHHHHhcCcEEEEcCCCchhH--------HHHHHhhccC-----CccEEeeecCCCCCCCCCCCceEEecCChHHHHHH
Q 002301 88 EALHLMEGQTVAIIGPQDAVTS--------HVVSHVANEL-----QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAA 154 (940)
Q Consensus 88 ~a~~li~~~v~aiiGp~~s~~a--------~~va~~~~~~-----~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~a 154 (940)
.+..|...++.+|+-+-++... .....+.+.. ++|+++. ..+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 4444545588888764444321 1123444444 7888862 244
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCC-------CChhHHHHHHHHHhcCCCeEEEE
Q 002301 155 IAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE-------ATEDEITDLLVKVALTESRIIVV 227 (940)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~l~~~~~~viv~ 227 (940)
+++.++..|-++|+++. .|.....+.+.+.+++.|+++......... .....+...++++...++|+||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 55556777889999996 466666668888899999988665444321 23456777788887778999999
Q ss_pred E-ecCCcHHHHHHH
Q 002301 228 H-THYNRGPVVFHV 240 (940)
Q Consensus 228 ~-~~~~~~~~~l~~ 240 (940)
. |..-....+..+
T Consensus 214 g~CT~l~~~~~~~~ 227 (273)
T 2xed_A 214 SCAVQMPSLPLVET 227 (273)
T ss_dssp ESSSSSCCTTHHHH
T ss_pred cCCCCcchHHhHHH
Confidence 9 876443333333
No 185
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=90.46 E-value=0.71 Score=45.62 Aligned_cols=71 Identities=14% Similarity=-0.006 Sum_probs=44.5
Q ss_pred eHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCc-ccEEeeceeeecC---cceeee--eccccccccEEE
Q 002301 496 CIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGV-YDAAVGDIAIITN---RTKMAD--FTQPYIESGLVV 569 (940)
Q Consensus 496 ~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~-~Di~~~~~~~t~~---R~~~v~--ft~p~~~~~~~~ 569 (940)
.-++++.+.++-|.++++.. ++...++.+|.+|+ +|+++..-....+ ....+. -..|+....+++
T Consensus 14 l~~~~~~F~~~p~i~v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 84 (231)
T 1atg_A 14 LEQLAGQFAKQTGHAVVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVL 84 (231)
T ss_dssp HHHHHHHHHHHHCCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEE
T ss_pred HHHHHHHHHhccCCeEEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEE
Confidence 34677777777677755533 34788999999998 9998763211111 111111 246778888888
Q ss_pred EEeccC
Q 002301 570 VAPVRK 575 (940)
Q Consensus 570 vv~~~~ 575 (940)
++++..
T Consensus 85 v~~~~~ 90 (231)
T 1atg_A 85 WSAKPG 90 (231)
T ss_dssp EESSTT
T ss_pred EEcCCC
Confidence 887654
No 186
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=90.44 E-value=0.29 Score=56.63 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=74.7
Q ss_pred CceeehhhhhhHhhcccc--ccccccchhhhHHHHHhhhhhhhhhccce-eeeeeeeccccCCCCCh--hHh-hhCCCCe
Q 002301 624 QVVTIFWFSFSTMFFAHK--EKTVSALGRLVLIIWLFVVLIINSSYTAS-LTSILTVQKLSSPIKGI--DSL-RSSNYPI 697 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~~--~~~~s~~~R~l~~~w~~~~lil~~~Yta~-L~s~Lt~~~~~~~i~si--~dL-~~~~~~i 697 (940)
++..++||++.++...|. -.|.+..+|++.++|.++++.+.+...+. ++++++...+....... ... .....++
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hv 130 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHI 130 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCE
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCeE
Confidence 688999999999987763 36889999999999999999888887776 55555433222111110 000 0112334
Q ss_pred EEE-eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCC-ceEEEEechhhHH
Q 002301 698 GYQ-VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKG-GVAAVVDDRAYAE 753 (940)
Q Consensus 698 ~~~-~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~a~~~~~~~~~ 753 (940)
.+. .|.+..... +.+......++..+..++..+.+.. . +..++..+....+
T Consensus 131 iI~G~g~~g~~la-~~L~~~~~~vvvid~~~~~~~~~~~----~~~~~~i~Gd~~~~~ 183 (565)
T 4gx0_A 131 LIFGIDPITRTLI-RKLESRNHLFVVVTDNYDQALHLEE----QEGFKVVYGSPTDAH 183 (565)
T ss_dssp EEESCCHHHHHHH-HHTTTTTCCEEEEESCHHHHHHHHH----SCSSEEEESCTTCHH
T ss_pred EEECCChHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHH----hcCCeEEEeCCCCHH
Confidence 443 344433333 3333333445555666666666666 4 5667776664443
No 187
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=90.23 E-value=0.21 Score=52.60 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=52.4
Q ss_pred CCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeeecc
Q 002301 618 RGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQK 679 (940)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 679 (940)
.+....++..++||++.++...| .-.|.+..+|++.+++.++++++.+.-++.+++.++.+.
T Consensus 90 ~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 90 ANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp CCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344578999999999998776 337899999999999999999999999999999887664
No 188
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=89.92 E-value=3.4 Score=40.61 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=56.7
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... -...+-.+++..+.++.+ .++++... ++...++++|.+|++|+++....
T Consensus 14 g~lrIg~~~~-------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 72 (228)
T 2fyi_A 14 GVLTIATTHT-------------QARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIASER 72 (228)
T ss_dssp EEEEEEECHH-------------HHHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESSS
T ss_pred ceEEEeeccc-------------hHHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEecc
Confidence 5799998631 123456788888988886 45566665 56889999999999999986321
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
. .....+. ..++....+++++++..
T Consensus 73 ~--~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 73 L--SNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp S--TTCTTEE-EEEEEEECEEEEEETTC
T ss_pred c--CCCCCce-EEEeeecceEEEecCCC
Confidence 1 1112232 35777788888887654
No 189
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=89.60 E-value=3 Score=40.77 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=57.8
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
..+||||+... ....+-..++..+.++.+ .++++... ++...++++|.+|++|++++..
T Consensus 7 ~g~l~Ig~~~~-------------~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~~ 65 (218)
T 2y7p_A 7 TRTFNLAMTDI-------------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLL 65 (218)
T ss_dssp CCEEEEECCHH-------------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEECC
T ss_pred ceEEEEEecHH-------------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEecC
Confidence 36789988621 123456678888888875 45566654 5578999999999999998632
Q ss_pred eeecCcceeeeeccccccccEEEEEeccC
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
+.....+.+ .|+....+++++++..
T Consensus 66 ---~~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 66 ---PELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp ---TTCCTTEEE-EEEEEECEEEEEETTC
T ss_pred ---CCCCcceeE-EEeeeccEEEEEcCCC
Confidence 111223443 5788889999998765
No 190
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=89.60 E-value=0.91 Score=50.21 Aligned_cols=106 Identities=14% Similarity=0.218 Sum_probs=61.4
Q ss_pred hhHh-hhCCC--CeEEE-eCchHHHHH---HhhhCCCc---cCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHH
Q 002301 687 IDSL-RSSNY--PIGYQ-VNSFARNYL---VDELNIDE---SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 756 (940)
Q Consensus 687 i~dL-~~~~~--~i~~~-~gs~~~~~l---~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 756 (940)
++|| ++.|+ +||+. .|+....++ ....+++. -+++.+ ...+...+|.+ |.+||++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~----G~iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRN----GTMDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHH----TCCCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHc----CCccEEEeccchHHHHH
Confidence 6888 64466 89997 576543322 23345543 245555 67889999999 89999998887776555
Q ss_pred hcCCcEEEe--CCccccCc-ceeecCCC----Cc-----chHHHHHHHHhccc
Q 002301 757 STRCEFSIV--GQVFTKNG-WGFAFPRD----SP-----LAVDISTAILKLSE 797 (940)
Q Consensus 757 ~~~~~l~~~--~~~~~~~~-~~~~~~k~----sp-----l~~~~~~~il~l~e 797 (940)
.+.....+. ++.....+ ..+++++. .| +...+.++...+.+
T Consensus 228 ~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 554332222 22222222 44566543 34 44455555555554
No 191
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=89.56 E-value=0.22 Score=43.59 Aligned_cols=55 Identities=13% Similarity=0.309 Sum_probs=47.4
Q ss_pred CceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeeec
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQ 678 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 678 (940)
++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+.+.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999776 44799999999999999999999999999988877544
No 192
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=89.42 E-value=2.6 Score=42.17 Aligned_cols=70 Identities=27% Similarity=0.231 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCc-ccEEeeceeeecC---cceeee--eccccccccEEEE
Q 002301 497 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGV-YDAAVGDIAIITN---RTKMAD--FTQPYIESGLVVV 570 (940)
Q Consensus 497 idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~-~Di~~~~~~~t~~---R~~~v~--ft~p~~~~~~~~v 570 (940)
-++++.+.++-|.++++.+ ++-..++..|.+|. +|+.++.-.-..+ ....+. -..+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~---------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSF---------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 4677777777788866554 34677889998887 9998873211111 112222 1247788889999
Q ss_pred EeccC
Q 002301 571 APVRK 575 (940)
Q Consensus 571 v~~~~ 575 (940)
+++..
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 98764
No 193
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=88.81 E-value=0.32 Score=50.60 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=51.4
Q ss_pred CCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeeec
Q 002301 618 RGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQ 678 (940)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 678 (940)
.+....++..++||++.++...| .-.|.+..+|++.+++.++++++.+..++.+++.++.+
T Consensus 76 ~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 76 ENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445678999999999998765 33799999999999999999999999999888888654
No 194
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=88.72 E-value=0.17 Score=54.12 Aligned_cols=124 Identities=12% Similarity=0.049 Sum_probs=73.1
Q ss_pred CceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEE-
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQ- 700 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~- 700 (940)
++..++||++.++...| .-.|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ..++.+.
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 67889999999998776 3378999999999999999999999999999999988765432221 11111 2233333
Q ss_pred eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHH
Q 002301 701 VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 756 (940)
Q Consensus 701 ~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 756 (940)
.|....... +.+..... ++-.+..++..+ +.. .+..++..|....+.+.
T Consensus 123 ~G~~g~~l~-~~L~~~g~-v~vid~~~~~~~-~~~----~~~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 123 WSESTLECL-RELRGSEV-FVLAEDENVRKK-VLR----SGANFVHGDPTRVSDLE 171 (336)
T ss_dssp CCHHHHHHH-TTGGGSCE-EEEESCGGGHHH-HHH----TTCEEEESCTTSHHHHH
T ss_pred CcHHHHHHH-HHHHhCCc-EEEEeCChhhhh-HHh----CCcEEEEeCCCCHHHHH
Confidence 343333333 33332223 444555555556 554 45667777765554443
No 195
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=88.57 E-value=2.7 Score=43.69 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=55.6
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... + ...+...++..+.+..+ .++++... ++.+.++..|.+|++|+++....
T Consensus 92 g~l~I~~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 150 (305)
T 3fxq_A 92 GHITFAASPA--I-----------ALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAAH 150 (305)
T ss_dssp TEEEEEECHH--H-----------HHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEECC
T ss_pred ceEEEEechH--H-----------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecCC
Confidence 4689998631 1 23456678888888875 34566654 44778899999999999987332
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
... ....+ -..|+....+++++++..
T Consensus 151 ~~~-~~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 151 KHD-IDTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp GGG-SCTTE-EEEEEEECCEEEEEETTC
T ss_pred CCC-CccCe-eEEEeecCcEEEEEcCCC
Confidence 211 01122 246777888899988654
No 196
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=88.56 E-value=1.3 Score=45.72 Aligned_cols=106 Identities=9% Similarity=0.042 Sum_probs=56.1
Q ss_pred CCCChhHhhhCCC--CeEEEeCchHH----HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHH
Q 002301 683 PIKGIDSLRSSNY--PIGYQVNSFAR----NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 756 (940)
Q Consensus 683 ~i~si~dL~~~~~--~i~~~~gs~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 756 (940)
.|+|++||..... ++|...+.... .-+.+..++....+... +..+...++.+ |+++++....+....-
T Consensus 124 ~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~----g~vd~~~~~~p~~~~~- 197 (275)
T 1sw5_A 124 GVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKN----KQVDVIPAYTTDSRVD- 197 (275)
T ss_dssp TCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHT----TSCSEEEEETTCHHHH-
T ss_pred CCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHc----CCCeEEEEeCCCcchh-
Confidence 7999999983311 23322211100 01224455544445555 56678999999 8999998887766532
Q ss_pred hcCCcEEEeCCc--c-ccCcceeecCCCCcchHHHHHHHHhcc
Q 002301 757 STRCEFSIVGQV--F-TKNGWGFAFPRDSPLAVDISTAILKLS 796 (940)
Q Consensus 757 ~~~~~l~~~~~~--~-~~~~~~~~~~k~spl~~~~~~~il~l~ 796 (940)
++ +++++.++ + .......+++++..=.+.+-+.|.++.
T Consensus 198 -~~-~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 198 -LF-NLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp -HT-TEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred -cC-CeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 22 56666442 2 222334455554320034445555553
No 197
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=88.43 E-value=1.9 Score=43.77 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCc-ccEEeeceeeecC---cceeee--eccccccccEEEE
Q 002301 497 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGV-YDAAVGDIAIITN---RTKMAD--FTQPYIESGLVVV 570 (940)
Q Consensus 497 idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~-~Di~~~~~~~t~~---R~~~v~--ft~p~~~~~~~~v 570 (940)
-+|.+.+.++.|.++++.+ ++-..++..|.+|. +|+.++.-.-..+ ....++ -..+|....++++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4677777777788766554 34678889999987 9998873211111 112222 1245677788999
Q ss_pred EeccC
Q 002301 571 APVRK 575 (940)
Q Consensus 571 v~~~~ 575 (940)
+++..
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 88765
No 198
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=87.96 E-value=0.38 Score=44.33 Aligned_cols=54 Identities=13% Similarity=0.301 Sum_probs=46.8
Q ss_pred CceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeee
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 677 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 677 (940)
++.+++||++.++...| .-.|.+..+|++.++|.++++.+.+...+++.+.+..
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998776 3379999999999999999999999988888776643
No 199
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=87.51 E-value=7.9 Score=40.49 Aligned_cols=206 Identities=13% Similarity=0.111 Sum_probs=119.1
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.++|||++.. + ...+..+++..+.+..+ .++++... ++...++..|.+|++|+++....
T Consensus 93 g~l~I~~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 151 (324)
T 1al3_A 93 GSLYVATTHT--Q-----------ARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATEA 151 (324)
T ss_dssp EEEEEEECHH--H-----------HHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESSC
T ss_pred CeEEEEechh--h-----------hhhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEecC
Confidence 5689998631 1 13455678888888875 34555554 45789999999999999986322
Q ss_pred eecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCcee
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (940)
.. ....+. ..|+....+++++++..+..
T Consensus 152 ~~--~~~~l~-~~~L~~~~~~~v~~~~~pl~------------------------------------------------- 179 (324)
T 1al3_A 152 LH--LYDDLV-MLPCYHWNRSIVVTPEHPLA------------------------------------------------- 179 (324)
T ss_dssp CC--TTSCEE-EEEEEEECEEEEECTTSTTT-------------------------------------------------
T ss_pred CC--CCCCee-EEEecCCceEEEEcCCCccc-------------------------------------------------
Confidence 11 112222 35667778888887654110
Q ss_pred ehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeE-EEeCchH-
Q 002301 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIG-YQVNSFA- 705 (940)
Q Consensus 628 ~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~-~~~gs~~- 705 (940)
....-+++||. +.++. +..++..
T Consensus 180 -----------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~~ 204 (324)
T 1al3_A 180 -----------------------------------------------------TKGSVSIEELA--QYPLVTYTFGFTGR 204 (324)
T ss_dssp -----------------------------------------------------TTSCCCHHHHH--TSEEEEECTTSTTH
T ss_pred -----------------------------------------------------cCCCCCHHHHh--CCCeEEecCCCcHH
Confidence 02234688998 55543 3333322
Q ss_pred ---HHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeC--CccccCcceeecCC
Q 002301 706 ---RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG--QVFTKNGWGFAFPR 780 (940)
Q Consensus 706 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k 780 (940)
..++. ..+.........++.+...+++.. |...+++....... .. ..++..+. .......++++.++
T Consensus 205 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~lv~~----G~Giailp~~~~~~-~~--~~~L~~~~~~~~~~~~~~~l~~~~ 276 (324)
T 1al3_A 205 SELDTAFN-RAGLTPRIVFTATDADVIKTYVRL----GLGVGVIASMAVDP-VS--DPDLVKLDANGIFSHSTTKIGFRR 276 (324)
T ss_dssp HHHHHHHH-HHTCCCEEEEEESSHHHHHHHHHH----TSCEEEEEGGGCCT-TT--CTTSEEEECBTTBCCEEEEEEEET
T ss_pred HHHHHHHH-HcCCCCceEEEeCCHHHHHHHHHh----CCCeEEechhhhhh-hc--cCCeEEEECCCCCcceEEEEEEeC
Confidence 23332 234333334567788899999998 55556665432211 11 22455442 23334457788888
Q ss_pred CCcchHHHHHHHHhcccccchHHHHHhhcc
Q 002301 781 DSPLAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 781 ~spl~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+.+....+...+..+.+. .-+.+.++++.
T Consensus 277 ~~~~~~~~~~fi~~l~~~-~~~~~~~~~~~ 305 (324)
T 1al3_A 277 STFLRSYMYDFIQRFAPH-LTRDVVDTAVA 305 (324)
T ss_dssp TCCCCHHHHHHHHHHCTT-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-hccchhhhhhh
Confidence 877666666666666554 23445555544
No 200
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=87.43 E-value=2.9 Score=43.59 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=41.2
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEech
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDR 749 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~ 749 (940)
.+|++++||+ |++|.+. |+.....+ +.++.. .++. ...|...+|++ |.+|+.....
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~ 183 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIA-ELVGAQ---PVTV-QQAELAQAMAT----GVIDSYMSSG 183 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHT----TSCSEEEECH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHH-HHcCCc---ceec-CHHHHHHHHhc----CeeeEEecCc
Confidence 6899999999 9999887 65545555 445532 3344 57889999999 8999985544
No 201
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=87.28 E-value=5.2 Score=41.02 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=56.1
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.++|||++.. + ...+..+++..+.++.+ .++++... ++...++.+|.+|++|+++....
T Consensus 91 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 149 (294)
T 1ixc_A 91 GELSVAYFGT--P-----------IYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSRFF 149 (294)
T ss_dssp EEEEEEECSG--G-----------GGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESCC
T ss_pred ceEEEEEccc--h-----------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEecC
Confidence 5799998732 1 13455678888888875 34566654 45778999999999999987432
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
.. ...+. ..|+....+++++++..
T Consensus 150 ~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 150 PR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred CC---CCCce-EEEEeeccEEEEEeCCC
Confidence 21 22222 35777888888888654
No 202
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=87.05 E-value=1.4 Score=47.53 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=52.2
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHH--HhcC
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELF--LSTR 759 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~--~~~~ 759 (940)
.+|++++||+ |++|.+. + .....+ +..+.. .++. ...|...+|++ |.+|+.....+...+- ..+-
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~-~~lGa~---pv~~-~~~e~y~ALq~----G~VDg~~~~~p~~~~~~~~~ev 229 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVM-ERLGVV---PQQI-AGGDIYPALEK----GTIDATEWVGPYDDEKLGFFKV 229 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHH-HTTTCE---EECC-CTTSHHHHHHH----TSCSEECCSCHHHHHHHTGGGT
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHH-HHcCCc---ceec-CHHHHHHHHhC----CCcceeeccCccchhhcChHHh
Confidence 6899999999 9998887 5 344555 445532 2222 45678899999 8999987554443321 1233
Q ss_pred CcEEEeCC-ccccCcceeecCCC
Q 002301 760 CEFSIVGQ-VFTKNGWGFAFPRD 781 (940)
Q Consensus 760 ~~l~~~~~-~~~~~~~~~~~~k~ 781 (940)
.++..... ........+++.++
T Consensus 230 ~k~~~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 230 APYYYYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp CCEEEECBTTCSSCEEEEEEEHH
T ss_pred hheeeccCccccccceEEEEcHH
Confidence 45544333 12223345666664
No 203
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=86.86 E-value=0.41 Score=47.71 Aligned_cols=73 Identities=10% Similarity=0.188 Sum_probs=56.0
Q ss_pred HHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeee
Q 002301 601 AVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 677 (940)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 677 (940)
+.+.+.+.+|+.. .++...++..++|+++.++...| .-.|.+..+|++.+++.++++.+.+...|.+++.++.
T Consensus 146 ~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666532 12334578999999999998766 4479999999999999999999999999998877653
No 204
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=86.76 E-value=1.4 Score=47.64 Aligned_cols=120 Identities=22% Similarity=0.215 Sum_probs=68.1
Q ss_pred CCCCChhHhhhCCCCeEEEe-------Cch-----------------------HHHHHHhhhCCCc--cCcccCCCHH--
Q 002301 682 SPIKGIDSLRSSNYPIGYQV-------NSF-----------------------ARNYLVDELNIDE--SRLVPLNSPE-- 727 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~-------gs~-----------------------~~~~l~~~~~~~~--~~~~~~~~~~-- 727 (940)
.+|++++||. |++||+.. |+. ...++ ++.+... -+++.+...+
T Consensus 109 s~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L-~~~Gl~~~dv~~v~~~~~~~~ 185 (365)
T 2de3_A 109 SPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTL-EHGELGVDDVELVPISSPGVD 185 (365)
T ss_dssp CSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHH-HHTTCCGGGSEEEECCCTTTC
T ss_pred CCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHH-HHcCCCHHHeEEEECCCcccc
Confidence 5799999998 99999986 542 23344 3344432 3445554321
Q ss_pred -----------------------HHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCcc---cc-CcceeecCC
Q 002301 728 -----------------------EYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVF---TK-NGWGFAFPR 780 (940)
Q Consensus 728 -----------------------~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~~~~~~~~k 780 (940)
+...+|.+ |++||++...++......+ +.+++.+.- .. ....+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~----G~vDA~~~~~p~~~~~~~~--g~~~l~~~~~~~~~~~~~~l~~~~ 259 (365)
T 2de3_A 186 VPAEQLEESATVKGADLFPDVARGQAAVLAS----GDVDALYSWLPWAGELQAT--GARPVVDLGLDERNAYASVWTVSS 259 (365)
T ss_dssp CCHHHHHHSSBSSHHHHSTTHHHHHHHHHHS----SSCSEEEEEHHHHHHHHHT--TEEESSCGGGSGGGCEEEEEEEEH
T ss_pred ccccccccccccccccccccchhhHHHHHhC----CCcCEEEEcchhHHHHHhC--CCEEEEeCcccCCCCceEEEEEcH
Confidence 26888998 8999999888776554442 355443321 11 123455552
Q ss_pred ----CCc-chHH----HHHHHHhccccc-chHHHHHhhcc
Q 002301 781 ----DSP-LAVD----ISTAILKLSENG-DLQRIHDKWLL 810 (940)
Q Consensus 781 ----~sp-l~~~----~~~~il~l~e~G-~~~~i~~kw~~ 810 (940)
..| +... +.++...+.++. ...++..+|+.
T Consensus 260 ~~~~~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 260 GLVRQRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANLG 299 (365)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 344 3333 455555555552 44455555544
No 205
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=85.95 E-value=11 Score=39.46 Aligned_cols=126 Identities=10% Similarity=0.087 Sum_probs=79.6
Q ss_pred EEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHHHH
Q 002301 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHVV 112 (940)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~~v 112 (940)
+||.+.............|+..++++.| +..++.+.+..+-.++..+.+++.+++++++.+|+..... .+..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~-~a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVD------PDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGG-TGNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHC------TTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGG-GHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHC------CCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCC-CchHH
Confidence 5788865543334556789999999986 3456555544333477888889999999899998875443 34444
Q ss_pred HHhhcc-----CCccEEeeecCCCCCCCC---CCCceEEecCChHHHHHHHHHHHHHcCCe
Q 002301 113 SHVANE-----LQVPLLSFSATDPTLSSL---QFPYFVRTTQSDQYQMAAIAEIVDHYGWR 165 (940)
Q Consensus 113 a~~~~~-----~~vP~Is~~at~~~ls~~---~~p~~~r~~psd~~~~~ai~~~l~~~~w~ 165 (940)
...+.+ .++-+|.+.........- ..|.+..+..+-...+...++.+..=.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 445555 678899886643222100 23556666666666666667666554553
No 206
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=85.58 E-value=8.5 Score=37.88 Aligned_cols=86 Identities=8% Similarity=-0.092 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCC-------CChhHHHHHHHHHhcC--CC
Q 002301 152 MAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE-------ATEDEITDLLVKVALT--ES 222 (940)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~l~~~--~~ 222 (940)
..++++.++..|-++|+++. .|+....+.+++.+++.|+++......... .....+...++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 45566667778889999995 466666667888999999987655444321 1345566777777666 89
Q ss_pred eEEEEEecCCcHHHHHHH
Q 002301 223 RIIVVHTHYNRGPVVFHV 240 (940)
Q Consensus 223 ~viv~~~~~~~~~~~l~~ 240 (940)
++||+.|..-....+..+
T Consensus 173 daIvLgCT~l~~~~~~~~ 190 (223)
T 2dgd_A 173 DAVYIACTALSTYEAVQY 190 (223)
T ss_dssp SEEEECCTTSCCTTHHHH
T ss_pred CEEEEeCCcccHHHHHHH
Confidence 999999876443333433
No 207
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=85.50 E-value=3.7 Score=42.78 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=40.9
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEech
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDR 749 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~ 749 (940)
.+|++++||+ |.+|.+. |+.....+ +.++.. .++. ...|...+|++ |.+|+.....
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~ 184 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMA-ALMGAV---PTTV-QTPEVPQAFST----GVIDAMLTSP 184 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHH-HHTTSE---EEEC-CGGGHHHHHHT----TSCSBEEECH
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHH-HHcCCc---ceec-cHHHHHHHHhc----ceeeeEecCc
Confidence 6899999999 9999887 65545555 445532 3444 57889999999 8899985543
No 208
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=85.32 E-value=3.3 Score=44.32 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=68.4
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHHH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHV 111 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~~ 111 (940)
=+||.+.......-.....|+..+++++| |..++.+.+..+-.|+..+.+.+..|+++++.+|+...... .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 36898887654333445789999999887 45777777766667999999999999999999998765553 3
Q ss_pred HHHhhccCCccEEeeecCC
Q 002301 112 VSHVANELQVPLLSFSATD 130 (940)
Q Consensus 112 va~~~~~~~vP~Is~~at~ 130 (940)
+...+.+.++.+|.+....
T Consensus 221 v~~aa~e~Gv~vIG~D~dq 239 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASDM 239 (356)
T ss_dssp HHHHHHHTTCEEEEEESCC
T ss_pred HHHHHHHcCCEEEEEcCch
Confidence 4566778899999876543
No 209
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=84.77 E-value=13 Score=38.44 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=55.1
Q ss_pred eEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceee
Q 002301 469 HLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAI 548 (940)
Q Consensus 469 ~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~ 548 (940)
+||||++.. + ...+..+++..+.++.+ .++++... ++...++.+|.+|++|+++.....
T Consensus 91 ~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~ 149 (312)
T 2h9b_A 91 TIRIGFVGS--L-----------LFGLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLKI 149 (312)
T ss_dssp EEEEEECGG--G-----------GGTTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSCC
T ss_pred eEEEEechh--h-----------hHhhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCCC
Confidence 799998631 1 12456678888888774 34466554 558899999999999999874322
Q ss_pred ecCcceeeeeccccccccEEEEEeccC
Q 002301 549 ITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 549 t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
.. ..+. ..|+....+++++++..
T Consensus 150 ~~---~~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 150 SD---PAIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp CC---TTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCce-EEEeecceEEEEEcCCC
Confidence 11 1222 35677788888887654
No 210
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=83.60 E-value=16 Score=37.07 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=46.7
Q ss_pred eeHHHHHHHHHhC-CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeecCcc-eeeeeccccccccEEEEEe
Q 002301 495 FCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT-KMADFTQPYIESGLVVVAP 572 (940)
Q Consensus 495 ~~idll~~l~~~l-~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~-~~v~ft~p~~~~~~~~vv~ 572 (940)
+-.+++..+.++. +.+ ++... ++..+++.+|.+|++|+++.......++. ..+. ..|+....++++++
T Consensus 41 ~l~~~l~~f~~~~P~i~--v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~ 110 (290)
T 1twy_A 41 IMDVLAEKYNQQHPETY--VAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVN 110 (290)
T ss_dssp HHHHHHHHHHHHCTTCE--EEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCce--EEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEEC
Confidence 3456788888877 445 44444 45888999999999999987433222110 1222 35777888888887
Q ss_pred ccC
Q 002301 573 VRK 575 (940)
Q Consensus 573 ~~~ 575 (940)
+..
T Consensus 111 ~~~ 113 (290)
T 1twy_A 111 QAN 113 (290)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
No 211
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=83.24 E-value=24 Score=36.55 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=54.9
Q ss_pred eEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceee
Q 002301 469 HLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAI 548 (940)
Q Consensus 469 ~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~ 548 (940)
+||||++.. + ...+..+++..+.++.+ .++++... ++...++.+|.+|++|+++.....
T Consensus 91 ~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~ 149 (313)
T 2h98_A 91 TLRIGYVSS--L-----------LYGLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLKI 149 (313)
T ss_dssp EEEEEECGG--G-----------GGTTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSCC
T ss_pred EEEEEechH--h-----------HHhHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCCC
Confidence 799998731 1 12456678888888875 34455554 458899999999999999863322
Q ss_pred ecCcceeeeeccccccccEEEEEeccC
Q 002301 549 ITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 549 t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
. ...+. ..|+....+++++++..
T Consensus 150 ~---~~~l~-~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 150 T---DPAIR-RIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp C---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred C---CCCee-EEEeeeCcEEEEEcCCC
Confidence 1 11222 35677788888887654
No 212
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=82.40 E-value=7.3 Score=40.53 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=53.3
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
..||||+.. . -...+..+++..+.+..+ .++++... ++...++.+|.+|++|+++....
T Consensus 105 ~~l~Ig~~~---~----------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~ 163 (315)
T 1uth_A 105 RTFNLAMTD---I----------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLLP 163 (315)
T ss_dssp CEEEEECCH---H----------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECCT
T ss_pred eEEEEEech---H----------HHHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecCC
Confidence 479998852 1 012345677888888775 34465554 44678999999999999986322
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
. ....+. ..|+....+++++++..
T Consensus 164 ~---~~~~l~-~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 164 E---LQTGFF-QRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp T---CCTTEE-EEEEEEECEEEEEETTC
T ss_pred C---CCCCce-EEEeeccceEEEEeCCC
Confidence 1 112222 35677788888887654
No 213
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=82.27 E-value=0.46 Score=51.25 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeee
Q 002301 599 FLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 676 (940)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt 676 (940)
+++.+.+.+.+++..+++ ...++..++|+++.++...| .-.|.+..+|++.+++.++++++.+...+.+++.+.
T Consensus 140 ~~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 215 (355)
T 3beh_A 140 LFAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFY 215 (355)
T ss_dssp HHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777654322 13468899999999998776 337899999999999999999999999999987764
Q ss_pred e
Q 002301 677 V 677 (940)
Q Consensus 677 ~ 677 (940)
.
T Consensus 216 ~ 216 (355)
T 3beh_A 216 Q 216 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 214
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=81.44 E-value=17 Score=37.47 Aligned_cols=121 Identities=11% Similarity=-0.013 Sum_probs=76.7
Q ss_pred EEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHHHH
Q 002301 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHVV 112 (940)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~~v 112 (940)
+||.+....... ...|+..++++.| +. +..+.+..+-.++..+.+++.+|+++++.+|+.... ..+..+
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D-~~a~Gv 196 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGD-GYHVPV 196 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCT-TTHHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCC-CCCHHH
Confidence 688887654221 6689999998876 24 554444333347778888999999989999997544 444455
Q ss_pred HHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeE
Q 002301 113 SHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWRE 166 (940)
Q Consensus 113 a~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~ 166 (940)
...+.+.++-+|.+.. +.. .....|.+..+..+-...+..+++.+..=.|+.
T Consensus 197 ~~a~~e~Gv~viG~D~-~~~-~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 197 VEAIKDQGDFAIGYVG-DQA-DLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHTCEEEEEES-CCS-SSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHcCCEEEEEec-chh-hhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 5667777899998876 321 111224555555555555665665555445653
No 215
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=81.30 E-value=1.1 Score=46.85 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=49.5
Q ss_pred CceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeeecc
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQK 679 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 679 (940)
++..++||++.++...| .-.|.+..+|++.+++.++++++.+.-++.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999776 337999999999999999999999999999998887654
No 216
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=80.94 E-value=10 Score=31.31 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=65.8
Q ss_pred eEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc-
Q 002301 141 FVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL- 219 (940)
Q Consensus 141 ~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~- 219 (940)
+|-+..+|......|+.-++..|- +|.++|+|.+-- ....-.+++.++|+.+-.. .+.+|+..-+.+|-.
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqdek--rrrerleefekqgvdvrtv------edkedfrenireiwer 74 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDEK--RRRERLEEFEKQGVDVRTV------EDKEDFRENIREIWER 74 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCHH--HHHHHHHHHHTTTCEEEEC------CSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchHH--HHHHHHHHHHHcCCceeee------ccHHHHHHHHHHHHHh
Confidence 344556777777888888888886 567889876632 2333346778899887643 256777777776643
Q ss_pred -CCCeEEEEEec--CCcHHHHHHHHHHcCC
Q 002301 220 -TESRIIVVHTH--YNRGPVVFHVAQYLGM 246 (940)
Q Consensus 220 -~~~~viv~~~~--~~~~~~~l~~a~~~g~ 246 (940)
-+-+++++... ......++.+|++.|.
T Consensus 75 ypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 75 YPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp CTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 35566666543 3568889999999885
No 217
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=79.61 E-value=33 Score=36.29 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=44.0
Q ss_pred HHHHHHHHhC-CCccCeEEeeCCCCCCCCCHhHHHHHHH-cC-cccEEeeceeeecCc---ceeeeeccccccccEEEEE
Q 002301 498 DVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLIT-AG-VYDAAVGDIAIITNR---TKMADFTQPYIESGLVVVA 571 (940)
Q Consensus 498 dll~~l~~~l-~~~~~~~~~~~~~~~~n~~~~~~~~~l~-~g-~~Di~~~~~~~t~~R---~~~v~ft~p~~~~~~~~vv 571 (940)
+|.+.+.++. |.++++.+- .-..++.++. .| .+|+.++.-.-..++ ....+--.+|....+++++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~g---------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv 129 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREAA---------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 129 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEEE---------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEeC---------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEE
Confidence 6777788887 888666543 3557788885 35 699987632111111 1223344678888899999
Q ss_pred eccC
Q 002301 572 PVRK 575 (940)
Q Consensus 572 ~~~~ 575 (940)
|+..
T Consensus 130 ~~~~ 133 (354)
T 3k6v_A 130 TNES 133 (354)
T ss_dssp CTTS
T ss_pred ECCC
Confidence 8765
No 218
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=78.64 E-value=1.4 Score=45.10 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=38.5
Q ss_pred hhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEec-hhhHH
Q 002301 687 IDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDD-RAYAE 753 (940)
Q Consensus 687 i~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~-~~~~~ 753 (940)
++||. |++|++..++....++.+..- ...+++.. ...+...++.+ |++||.+.- .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll-~~~~~~~~-~~~~~~~al~~----G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYA-QGFVPVEV-RYDRILPMVAQ----GEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHC-SSCEEEEC-CGGGHHHHHHT----TSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHh-ccCceeec-ChHHHHHHHHC----CCCCEEEEecchhhh
Confidence 78887 899999876655444333221 11233333 45588899999 899998874 55555
No 219
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=77.10 E-value=2.1 Score=48.43 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeee
Q 002301 601 AVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 677 (940)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 677 (940)
+.+.+++.+++.. ......++..++|+++.++...| .-.|.+..+|++.++++++++++.+.+.|.+.+-+..
T Consensus 356 if~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 356 LFSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555432 22344578899999999998775 3378889999999999999999999999988875543
No 220
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=76.16 E-value=2.8 Score=40.35 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=49.1
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... -...+-.+++..+.++.+ .++++... . +. +.+|.+|++|+++....
T Consensus 7 g~l~Ig~~~~-------------~~~~~l~~~l~~f~~~~P-~v~l~i~~-------~--~~-~~~l~~g~~D~~i~~~~ 62 (213)
T 3hhf_B 7 GVLSVDSAMP-------------MVLHLLAPLAAKFNERYP-HIRLSLVS-------S--EG-YINLIERKVDIALRAGE 62 (213)
T ss_dssp EEEEEEECHH-------------HHHHTHHHHHHHHHHHCT-TEEEEEEC-------C--ST-THHHHTTSSSEEEECC-
T ss_pred ceEEEecCHH-------------HHHHHHHHHHHHHHHHCC-CcEEEEEe-------C--Cc-HHHHHhCCccEEEEEec
Confidence 4789988631 122456688888888875 34454442 1 11 34588999999987432
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
.. ...+. +.++.+..+++++++..
T Consensus 63 ~~---~~~~~-~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 63 LD---DSGLR-ARHLFDSRFRVIASPEY 86 (213)
T ss_dssp -C---CSSEE-EEEEEEECEEEEECHHH
T ss_pred CC---Cccce-EEeeecceEEEEeCHHH
Confidence 22 22232 46778888999987653
No 221
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=76.03 E-value=5.8 Score=40.58 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=61.3
Q ss_pred CCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcE
Q 002301 683 PIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEF 762 (940)
Q Consensus 683 ~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l 762 (940)
.+++++||. +.+|++.--.....||. +.+.. .+++...-.-|..-.+ |-.|++++-.....-+-++ +|
T Consensus 120 ~~~~~~~l~--~~RIATkYp~l~r~yf~-~~gi~-~~Ii~l~GsvE~aP~~------GlADaIvDiVsTG~TLraN--gL 187 (304)
T 1nh8_A 120 RNWTTADLA--GMRIATAYPNLVRKDLA-TKGIE-ATVIRLDGAVEISVQL------GVADAIADVVGSGRTLSQH--DL 187 (304)
T ss_dssp SCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCCTHHHHT------TSCSEEEEEESSSHHHHHT--TE
T ss_pred CcCChHHhC--CCEEEeCcHHHHHHHHH-HCCCe-EEEEECCCceeeccCC------CcccEEEEEeCChHHHHHC--cC
Confidence 455788886 78899888778889994 44554 5566554444444333 5567887755544433333 67
Q ss_pred EEeCCccccCcceeecCCCCc-c--hHHHHHHHHhcc
Q 002301 763 SIVGQVFTKNGWGFAFPRDSP-L--AVDISTAILKLS 796 (940)
Q Consensus 763 ~~~~~~~~~~~~~~~~~k~sp-l--~~~~~~~il~l~ 796 (940)
..+++.+..+.-.++..|.+. . .+.++..+.+|.
T Consensus 188 ~~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 188 VAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred EEcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 877565666666666777662 1 235666666654
No 222
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=75.25 E-value=6.4 Score=40.88 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
.+.+++||.. +|.+. -+...+++.+.+.+|+++++. + ++-..+...|.+|++|+....
T Consensus 5 ~~~~I~ig~~---~~~~~----------~~~~~i~~~~Le~~G~~Ve~~--~-------~~~~~~~~Al~~G~iD~~~~~ 62 (298)
T 2rin_A 5 SCGTVRFSDV---GWTDI----------TATTATATTILEALGYETDVK--V-------LSVPVTYTSLKNKDIDVFLGN 62 (298)
T ss_dssp CTTEEEEECC---SCHHH----------HHHHHHHHHHHHHHTCEEEEE--C-------CCHHHHHHHHHHTSCCEEEEE
T ss_pred cCCCEEEecC---CCcHH----------HHHHHHHHHHHHHcCCceEEE--E-------CCcHHHHHHHHcCCcEEEhhh
Confidence 3467888875 33221 112245555566679885553 3 335678899999999998753
No 223
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=74.76 E-value=6.9 Score=42.36 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=63.4
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcch--hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--
Q 002301 155 IAEIVDHYGWREVIAIYVDDDHGR--NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-- 230 (940)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~-- 230 (940)
+.++++.+|.+++.+|+....... +..+.+.+.|++.|+++..-..+.+.++.+.+...+..+++.++|+||-.+.
T Consensus 24 l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs 103 (387)
T 3bfj_A 24 VGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGS 103 (387)
T ss_dssp HHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 566778889899988886555444 4789999999999988754344555567788899999999999999986644
Q ss_pred CCcHHHHHHHH
Q 002301 231 YNRGPVVFHVA 241 (940)
Q Consensus 231 ~~~~~~~l~~a 241 (940)
.-++.+++...
T Consensus 104 v~D~aK~iA~~ 114 (387)
T 3bfj_A 104 PHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 35566665544
No 224
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=74.51 E-value=7.5 Score=40.58 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=38.3
Q ss_pred CCCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 465 NNGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 465 ~~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
..+.+++||.. +|.. . -+...+++.+.+.+|+++++... .+..-+...|.+|++|+...
T Consensus 5 ~~~~~I~ig~~---~~~e-------~---~~~~~i~~~~Le~~Gy~Ve~~~~--------~~~~~~~~Al~~G~iDi~~e 63 (309)
T 1r9l_A 5 GKGITVNPVQS---TITE-------E---TFQTLLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFTAV 63 (309)
T ss_dssp TTTCEECEEEC---SCGG-------G---HHHHHHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEEEE
T ss_pred CCCceEEEeec---CccH-------H---HHHHHHHHHHHHHcCCCeEEeec--------CchHHHHHHHhcCCceEEec
Confidence 34567888765 2321 1 12235666677788999776422 23677889999999999865
No 225
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=72.87 E-value=4 Score=44.13 Aligned_cols=90 Identities=8% Similarity=0.030 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-
Q 002301 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (940)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~- 231 (940)
..+.++++.+|.+++.+|+...-......+.+.+.|++.|+.+..-..+.+.++.+.+...+..+++.++|+||-.+.+
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGS 99 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 4466778889999999988654333336788999999999887544445555678889999999998899998877543
Q ss_pred -CcHHHHHHHHH
Q 002301 232 -NRGPVVFHVAQ 242 (940)
Q Consensus 232 -~~~~~~l~~a~ 242 (940)
-++.+++....
T Consensus 100 v~D~aK~ia~~~ 111 (383)
T 3ox4_A 100 PHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 45556555444
No 226
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=72.81 E-value=15 Score=36.15 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=25.6
Q ss_pred HHHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 87 AEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 87 ~~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
+.+..|...++.+|+-+-++.. ..+..+-+..++|+|.
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~ 102 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIIS 102 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCC
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEec
Confidence 4455555559998887665554 5556666777898885
No 227
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=72.77 E-value=20 Score=35.23 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=60.7
Q ss_pred HHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEE
Q 002301 89 ALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVI 168 (940)
Q Consensus 89 a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ 168 (940)
+..|.+.++.+|+-+-++. ..+..+-+..++|+++.. ++.++.....+ ++|+
T Consensus 68 ~~~l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rig 119 (228)
T 2eq5_A 68 AKEFEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVG 119 (228)
T ss_dssp HHHHHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEE
T ss_pred HHHHHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEE
Confidence 4445555888887544444 445555566788988521 11122222456 8899
Q ss_pred EEEEcCCcchhhHHHHHHHH-hcCceeEEEee-----cCCCCCChhHHHHHHHHHhcCCCeEEEEEecC
Q 002301 169 AIYVDDDHGRNGIAALGDTL-AAKRCRISFKA-----PLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (940)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l-~~~g~~v~~~~-----~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~ 231 (940)
++....... ..+.+.+ ++.|..+.... .+........+...+.++.+.++|+||+.|..
T Consensus 120 Vlat~~t~~----~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~ 184 (228)
T 2eq5_A 120 VLNLTEETP----KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTG 184 (228)
T ss_dssp EECSSSCCC----HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTH
T ss_pred EEecCcccH----HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 998754322 2466777 77776642111 00000112334555666665678888887754
No 228
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=71.75 E-value=2.4 Score=44.81 Aligned_cols=88 Identities=15% Similarity=-0.042 Sum_probs=53.8
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHH-HHhcCC
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL-FLSTRC 760 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~-~~~~~~ 760 (940)
.+|++++||+ |++|.+..+......+ +.++.. .++. ...|...+|++ |.+|+.....+...- -+.+-.
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~----G~VDg~~~p~~~~~~~~~~ev~ 216 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESI-RSLGAI---PVAV-NFGEIYTAVQT----RAVDGAELTYANVYNGGLYEVL 216 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHH-HHHTSE---EECC-CGGGHHHHHHT----TSCSEEEECHHHHHHTTGGGTC
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHH-HHcCCE---eeec-CHHHHHHHHHc----CCeeEEECCHHHHHHcChhhhc
Confidence 6899999999 9998887544444555 455532 2333 56789999999 899999876554311 111233
Q ss_pred cEEEeCCccccCcceeecCCC
Q 002301 761 EFSIVGQVFTKNGWGFAFPRD 781 (940)
Q Consensus 761 ~l~~~~~~~~~~~~~~~~~k~ 781 (940)
++....... .....+++.++
T Consensus 217 ky~~~~~~~-~~~~~~~~n~~ 236 (327)
T 2hpg_A 217 KYMSETGHF-LLINFEIVSAD 236 (327)
T ss_dssp CEEEEEEEE-EEEEEEEEEHH
T ss_pred cEEEecCcc-hhceEEEEeHH
Confidence 444332222 23455666654
No 229
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=70.81 E-value=67 Score=32.76 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHHHHHHHHh-CCCccCeEEeeCCCCCCCCCHhHHHHHHHc-Cc-ccEEeecee--ee-cCcceeeeeccccccccEEEE
Q 002301 497 IDVFTAAINL-LPYAVPYKLIPFGDGHNNPSCTELVRLITA-GV-YDAAVGDIA--II-TNRTKMADFTQPYIESGLVVV 570 (940)
Q Consensus 497 idll~~l~~~-l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~-g~-~Di~~~~~~--~t-~~R~~~v~ft~p~~~~~~~~v 570 (940)
-++++.+.++ -|.++++.+ ++...++..+.+ |. +|+.+..-. +. ......++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCEEEEEE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 4677777777 487755533 446788899988 75 999876321 11 122233345567778888888
Q ss_pred EeccC
Q 002301 571 APVRK 575 (940)
Q Consensus 571 v~~~~ 575 (940)
+++..
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87654
No 230
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=70.57 E-value=4.7 Score=41.50 Aligned_cols=61 Identities=10% Similarity=0.026 Sum_probs=41.5
Q ss_pred CCCeEEE-eCchHHHHHH---hhhCCCccCcccCC-CHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC
Q 002301 694 NYPIGYQ-VNSFARNYLV---DELNIDESRLVPLN-SPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR 759 (940)
Q Consensus 694 ~~~i~~~-~gs~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~ 759 (940)
|++|++. .|+.....++ ++.+. +-+++... +..+...++.+ |++||.+...++......+.
T Consensus 96 GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~----G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 96 EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILA----GKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHH----TSCSEEEECTTHHHHHHHHC
T ss_pred CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHc----CCCCEEEecccHHHHHHhhC
Confidence 8899976 5665444332 23444 34455555 68999999999 89999888778776655443
No 231
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=70.54 E-value=76 Score=32.30 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=45.0
Q ss_pred HHHHHHHHHh-CCCccCeEEeeCCCCCCCCCHhHHHHHHHc-Cc-ccEEeecee--eec-CcceeeeeccccccccEEEE
Q 002301 497 IDVFTAAINL-LPYAVPYKLIPFGDGHNNPSCTELVRLITA-GV-YDAAVGDIA--IIT-NRTKMADFTQPYIESGLVVV 570 (940)
Q Consensus 497 idll~~l~~~-l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~-g~-~Di~~~~~~--~t~-~R~~~v~ft~p~~~~~~~~v 570 (940)
-++++.+.++ -|.++++.+ ++...++..+.+ |. +|+.+..-. +.. .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 4677777777 488866644 346778999988 75 999876321 111 11223345567888888888
Q ss_pred EeccC
Q 002301 571 APVRK 575 (940)
Q Consensus 571 v~~~~ 575 (940)
+++..
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87664
No 232
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=68.53 E-value=12 Score=28.09 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=5.5
Q ss_pred chhhHHHHHH
Q 002301 873 RSARLQTFLS 882 (940)
Q Consensus 873 ~~~~~~~~~~ 882 (940)
|-+.++++++
T Consensus 43 RMSQikrlLs 52 (70)
T 2klu_A 43 RMSQIKRLLS 52 (70)
T ss_dssp TSSHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3345666665
No 233
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=68.19 E-value=84 Score=29.89 Aligned_cols=158 Identities=21% Similarity=0.162 Sum_probs=98.5
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHHH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHV 111 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~~ 111 (940)
.+|.++.|.. ....-++-..++.| ..+.+.. ++-..++..+.++ .+++.+||.-+ .++..
T Consensus 5 ~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRG--gta~~ 64 (196)
T 2q5c_A 5 LKIALISQNE-----NLLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIISRG--ATSDY 64 (196)
T ss_dssp CEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEH--HHHHH
T ss_pred CcEEEEEccH-----HHHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEECC--hHHHH
Confidence 4788888874 22233333444432 2444433 4567788889999 88999999422 22333
Q ss_pred HHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcC
Q 002301 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAK 191 (940)
Q Consensus 112 va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~ 191 (940)
+ -+..++|+|.. ..+.....+++...-+ ++ +++++|...+.. ...+.+.+.+
T Consensus 65 l---r~~~~iPVV~I------------------~~s~~Dil~al~~a~~-~~-~kIavvg~~~~~--~~~~~~~~ll--- 116 (196)
T 2q5c_A 65 I---KKSVSIPSISI------------------KVTRFDTMRAVYNAKR-FG-NELALIAYKHSI--VDKHEIEAML--- 116 (196)
T ss_dssp H---HTTCSSCEEEE------------------CCCHHHHHHHHHHHGG-GC-SEEEEEEESSCS--SCHHHHHHHH---
T ss_pred H---HHhCCCCEEEE------------------cCCHhHHHHHHHHHHh-hC-CcEEEEeCcchh--hHHHHHHHHh---
Confidence 3 34468999963 2344555666666644 44 389988765432 2356666666
Q ss_pred ceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCC
Q 002301 192 RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 192 g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~ 247 (940)
|+++... .+ .+.++....++++++.+.++||-... ..+.|+++||.
T Consensus 117 ~~~i~~~-~~---~~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 GVKIKEF-LF---SSEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp TCEEEEE-EE---CSGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred CCceEEE-Ee---CCHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 4444432 22 25678899999999999999876543 46678888974
No 234
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=68.15 E-value=53 Score=33.46 Aligned_cols=71 Identities=14% Similarity=0.002 Sum_probs=45.1
Q ss_pred eHHHHHHHHHh-CCCccCeEEeeCCCCCCCCCHhHHHHHHHc-Cc-ccEEeeceee--e-cCcceeeeeccccccccEEE
Q 002301 496 CIDVFTAAINL-LPYAVPYKLIPFGDGHNNPSCTELVRLITA-GV-YDAAVGDIAI--I-TNRTKMADFTQPYIESGLVV 569 (940)
Q Consensus 496 ~idll~~l~~~-l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~-g~-~Di~~~~~~~--t-~~R~~~v~ft~p~~~~~~~~ 569 (940)
.-++++.+.++ -|.++++.+ ++-..++..|.+ |. +|+.+..-.. . ......++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 19 FEEYEKMFEKEHPNVDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 34677777777 477755543 346788999988 75 9998763211 1 11222334556777888888
Q ss_pred EEeccC
Q 002301 570 VAPVRK 575 (940)
Q Consensus 570 vv~~~~ 575 (940)
++++..
T Consensus 90 ~~~~~~ 95 (292)
T 3cfz_A 90 AYTDKS 95 (292)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 887654
No 235
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=66.67 E-value=85 Score=30.64 Aligned_cols=128 Identities=14% Similarity=0.147 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHhc-CcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHH
Q 002301 80 HSGFLALAEALHLMEG-QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI 158 (940)
Q Consensus 80 ~~~~~a~~~a~~li~~-~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~ 158 (940)
++-..++..+.+++.+ ++.+||.-+ .++..+ -+..++|+|.. ..+.....+++...
T Consensus 46 ~~le~av~~a~~~~~~~~~dVIISRG--gta~~L---r~~~~iPVV~I------------------~vs~~Dil~aL~~a 102 (225)
T 2pju_A 46 LGFEKAVTYIRKKLANERCDAIIAAG--SNGAYL---KSRLSVPVILI------------------KPSGYDVLQFLAKA 102 (225)
T ss_dssp CCHHHHHHHHHHHTTTSCCSEEEEEH--HHHHHH---HTTCSSCEEEE------------------CCCHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEeCC--hHHHHH---HhhCCCCEEEe------------------cCCHHHHHHHHHHH
Confidence 3456678888887775 698998422 223333 34468999963 23444556666655
Q ss_pred HHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHH
Q 002301 159 VDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVF 238 (940)
Q Consensus 159 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l 238 (940)
-+ ++ +++++|...+. ....+.+.+.+ |+++... .+ .+.++....++++++.+.++||-... ..
T Consensus 103 ~~-~~-~kIavVg~~~~--~~~~~~i~~ll---~~~i~~~-~~---~~~ee~~~~i~~l~~~G~~vVVG~~~------~~ 165 (225)
T 2pju_A 103 GK-LT-SSIGVVTYQET--IPALVAFQKTF---NLRLDQR-SY---ITEEDARGQINELKANGTEAVVGAGL------IT 165 (225)
T ss_dssp TC-TT-SCEEEEEESSC--CHHHHHHHHHH---TCCEEEE-EE---SSHHHHHHHHHHHHHTTCCEEEESHH------HH
T ss_pred Hh-hC-CcEEEEeCchh--hhHHHHHHHHh---CCceEEE-Ee---CCHHHHHHHHHHHHHCCCCEEECCHH------HH
Confidence 44 44 58998876553 23455666666 4444432 23 36789999999999999999876543 46
Q ss_pred HHHHHcCCC
Q 002301 239 HVAQYLGML 247 (940)
Q Consensus 239 ~~a~~~g~~ 247 (940)
+.|+++||.
T Consensus 166 ~~A~~~Gl~ 174 (225)
T 2pju_A 166 DLAEEAGMT 174 (225)
T ss_dssp HHHHHTTSE
T ss_pred HHHHHcCCc
Confidence 678888874
No 236
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=65.53 E-value=13 Score=40.37 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcch-hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--
Q 002301 154 AIAEIVDHYGWREVIAIYVDDDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-- 230 (940)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~-- 230 (940)
.+.++++.+|.+++.+|+.+..... ...+.+.+.|++.|+++..-....+.++.+.+...+..+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 3566778889899988885343333 3578889999988987653333444456788888999999999999997654
Q ss_pred CCcHHHHHHHH
Q 002301 231 YNRGPVVFHVA 241 (940)
Q Consensus 231 ~~~~~~~l~~a 241 (940)
.-++.+++...
T Consensus 113 viD~AK~iA~~ 123 (407)
T 1vlj_A 113 VVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 237
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=65.30 E-value=7.5 Score=42.09 Aligned_cols=88 Identities=8% Similarity=0.032 Sum_probs=63.4
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CC
Q 002301 155 IAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YN 232 (940)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~ 232 (940)
+.++++.+|.+++.+|+..........+.+.+.|++.|+++..-..+.+.++.+.+...++.+++.++|+||-.+. .-
T Consensus 22 l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 101 (386)
T 1rrm_A 22 LTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQ 101 (386)
T ss_dssp HHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHH
T ss_pred HHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHH
Confidence 5667777888999888754333334688899999989987754444555567788899999999889999997644 35
Q ss_pred cHHHHHHHHH
Q 002301 233 RGPVVFHVAQ 242 (940)
Q Consensus 233 ~~~~~l~~a~ 242 (940)
++.+++....
T Consensus 102 D~aK~iA~~~ 111 (386)
T 1rrm_A 102 DTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 238
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=64.74 E-value=24 Score=36.45 Aligned_cols=79 Identities=8% Similarity=0.027 Sum_probs=59.4
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a 241 (940)
+.|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+...++|.||+.... ......++++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N--GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 778889999999999999988876533 2 344555677788888899999988654 3446778888
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 87764
No 239
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=64.42 E-value=56 Score=31.63 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=56.2
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... + ...+..+++..+.++.+ .++++... ++..+++.+|.+|++|+++....
T Consensus 27 g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~~~ 85 (238)
T 3onm_A 27 GSLIIGASDD--T-----------ADTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITTAK 85 (238)
T ss_dssp CCEEEEECHH--H-----------HTTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEECSC
T ss_pred eeEEEeccch--h-----------hHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEecC
Confidence 5799998631 1 12456788888888775 34566554 56899999999999999987332
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
. ..+ -..++....+++++++..
T Consensus 86 ~-----~~~-~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 86 V-----DSH-PHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp C------CC-CEEEEEEECEEEEEETTC
T ss_pred C-----CCc-ceEEeecCCEEEEEcCCC
Confidence 1 112 246778888899988764
No 240
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=63.98 E-value=2.7 Score=42.82 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=50.6
Q ss_pred CceeehhhhhhHhhccc--cccccccc-------hhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhH
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSAL-------GRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDS 689 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~-------~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~d 689 (940)
++.+++|+++.++...| .-.|.+.. +|++.++|.++++.+.+...+.+++.+...++...+..-+|
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 275 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKD 275 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC----
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 57899999999998776 33566653 59999999999999999999999998887776655544333
No 241
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=62.17 E-value=8.1 Score=41.76 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=56.3
Q ss_pred ccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHHHHHHh------hhCCCccCcccCCCHHHHHHHhhcCCCCC
Q 002301 667 YTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVD------ELNIDESRLVPLNSPEEYAKALKDGPHKG 740 (940)
Q Consensus 667 Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 740 (940)
|.-.-.++++... ++|++++||. + ||++.+.....+... +.+.. ..++.|++..+++.+|.+ |
T Consensus 13 ~~~~~~~vvV~kd--s~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~~-~~~~~y~~~~~a~~aL~n----G 81 (398)
T 2xxp_A 13 YSEYSLSVAVLAD--SEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNTD-LTVNQSSSYLAAYKSLIA----G 81 (398)
T ss_dssp --CEEEEEEEETT--CSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCCC-CEEEECSSHHHHHHHHHT----T
T ss_pred eeEEEEEEEEECC--CCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCCc-ceEEecCCHHHHHHHHHc----C
Confidence 3333344444433 7999999998 5 999988766654421 11221 357789999999999999 9
Q ss_pred ceEEEEechhhHHHHHh
Q 002301 741 GVAAVVDDRAYAELFLS 757 (940)
Q Consensus 741 ~~~a~~~~~~~~~~~~~ 757 (940)
+++|++.+..+...+..
T Consensus 82 ~vDAiv~~~~~~~~le~ 98 (398)
T 2xxp_A 82 ETKAIVLNSVFENIIEL 98 (398)
T ss_dssp SCSCEEEEHHHHHHHHH
T ss_pred CCCEEEEchHHHHHHHh
Confidence 99999999887766543
No 242
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=61.96 E-value=34 Score=32.57 Aligned_cols=104 Identities=11% Similarity=0.046 Sum_probs=57.4
Q ss_pred CChhHhhhCCCCe-EEEeCchHHHHHHhhhCCCc---cCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC
Q 002301 685 KGIDSLRSSNYPI-GYQVNSFARNYLVDELNIDE---SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC 760 (940)
Q Consensus 685 ~si~dL~~~~~~i-~~~~gs~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 760 (940)
-+++||. +.++ ....+.....++.+...... ......++.+...+++.. |...+++.+.....+......
T Consensus 96 ~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~~~~~~l 169 (219)
T 3kos_A 96 QTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQA----GMGVAIAPVRMFTHLLSSERI 169 (219)
T ss_dssp SSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHT----TSCBEEEEGGGCHHHHHTTSS
T ss_pred CCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHc----CCCeEeehHHhhHHHHHcCCe
Confidence 4578887 5554 34445555555543221111 223567889999999999 555566666554444333221
Q ss_pred cEEEeCCccccCcceeecCCCCcchHHHHHHHHhc
Q 002301 761 EFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKL 795 (940)
Q Consensus 761 ~l~~~~~~~~~~~~~~~~~k~spl~~~~~~~il~l 795 (940)
. ....+......++++.+|+.+....+...+..+
T Consensus 170 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 170 V-QPFLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp B-CCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred e-ccccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 1 122223334467888888876555555544433
No 243
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=61.25 E-value=9.3 Score=41.24 Aligned_cols=80 Identities=14% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC--C
Q 002301 155 IAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--N 232 (940)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~--~ 232 (940)
+.++++.+| +++.+|+....+. ...+.+.+.|++ |+.+.+ ..+...++.+++...+..+++.++|+||-.+.+ -
T Consensus 44 l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~ 119 (387)
T 3uhj_A 44 LAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKTA 119 (387)
T ss_dssp THHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHH
T ss_pred HHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHH
Confidence 566788889 9998887655443 367888889988 988744 345555677888888888888899998877544 3
Q ss_pred cHHHHH
Q 002301 233 RGPVVF 238 (940)
Q Consensus 233 ~~~~~l 238 (940)
++.+++
T Consensus 120 D~AK~i 125 (387)
T 3uhj_A 120 DTAKIV 125 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 244
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=61.08 E-value=88 Score=30.91 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=26.8
Q ss_pred HHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEe
Q 002301 500 FTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 543 (940)
Q Consensus 500 l~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~ 543 (940)
++...++.|++ ++.+.+ .+|.....+|.+|++|+..
T Consensus 21 ~~~~~~~~Gl~--ve~~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHIE--LRIVEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTEE--EEEEEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCCe--EEEEEc------CChHHHHHHHHcCCCCEec
Confidence 44455666877 555555 3499999999999999964
No 245
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=61.05 E-value=38 Score=35.15 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=43.5
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhH
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYA 752 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~ 752 (940)
.+|++++||+ |++|.+.........+ +.++.. .++. ...|...+|++ |.+|+.....+..
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~----G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYA-KYVGAS---PTPM-AFSEVYLALQT----NAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHT----TSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHc----CCcceEeccHHHH
Confidence 6899999999 9999887644334555 445532 2333 56789999999 8999998876655
No 246
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=60.62 E-value=26 Score=35.19 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=31.6
Q ss_pred eeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 495 FCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 495 ~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
+...|.+.+.+.+|+++++. + ++-.-+...|.+|++|+....
T Consensus 16 i~~~i~~~~Le~~G~~Ve~~--~-------~~~~~~~~al~~G~iD~~~e~ 57 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKTT--A-------LDNAVAWQTVANGQADGMVSA 57 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEE--E-------CCHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEE--E-------CChHHHHHHHHCCCCeEEEcc
Confidence 44577788888889886654 3 335678999999999998763
No 247
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=60.41 E-value=17 Score=38.91 Aligned_cols=99 Identities=10% Similarity=0.041 Sum_probs=66.3
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcch-hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHH
Q 002301 139 PYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV 217 (940)
Q Consensus 139 p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l 217 (940)
|+-+...+... ..+.++++.+| +++.+|+....... +..+.+.+.|++.|+++..-..+.+.++.+.+......+
T Consensus 19 p~~i~~G~g~~---~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~ 94 (371)
T 1o2d_A 19 PTDVFFGEKIL---EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY 94 (371)
T ss_dssp CCEEEESTTHH---HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH
Confidence 44444444422 33556677788 89988886644433 257889999998898765444445556788899999999
Q ss_pred hcCCCeEEEEEec--CCcHHHHHHHH
Q 002301 218 ALTESRIIVVHTH--YNRGPVVFHVA 241 (940)
Q Consensus 218 ~~~~~~viv~~~~--~~~~~~~l~~a 241 (940)
++.++|+||-.+. .-++.+++...
T Consensus 95 ~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 95 RNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp TTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 9899999997654 34555555443
No 248
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=59.66 E-value=39 Score=33.08 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=45.2
Q ss_pred HHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEE
Q 002301 91 HLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAI 170 (940)
Q Consensus 91 ~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii 170 (940)
.|...++.+|+-+-++.... +..+-+..++|+|.. .++.++-+...+-++|+++
T Consensus 68 ~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvl 121 (226)
T 2zsk_A 68 ALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLL 121 (226)
T ss_dssp HHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEE
Confidence 34444888887655555432 455556678888852 1333443444567899998
Q ss_pred EEcCCcchhhHHHHHHHHhcCceeEE
Q 002301 171 YVDDDHGRNGIAALGDTLAAKRCRIS 196 (940)
Q Consensus 171 ~~d~~~g~~~~~~l~~~l~~~g~~v~ 196 (940)
.....- . ...+++.+++.|+++.
T Consensus 122 aT~~T~--~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 122 GTKTTM--T-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp SSTTTT--S-CHHHHHHHHTTTCEEE
T ss_pred eCHHHH--h-hhHHHHHHHHCCCEEE
Confidence 743321 1 1345677777787764
No 249
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=59.61 E-value=3.6 Score=42.06 Aligned_cols=71 Identities=8% Similarity=-0.019 Sum_probs=42.0
Q ss_pred CcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCC--ccccCcceeecCCCCcchHHHHHHHHhc
Q 002301 719 RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQ--VFTKNGWGFAFPRDSPLAVDISTAILKL 795 (940)
Q Consensus 719 ~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~~~~~il~l 795 (940)
.....++.+....++.. |...+++.+.....+. ... .+..+.. ......++++.+++.+....+...+..+
T Consensus 213 ~~~~~~~~~~~~~~v~~----g~Giailp~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 285 (291)
T 3szp_A 213 GRFQASALNVVRSACSE----GLGITLMPDVMLREFL-EDG-SLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFV 285 (291)
T ss_dssp CSEEESSHHHHHHHHHT----TCCEEEEEGGGTHHHH-HTT-TSEECCTTCBCCCEEEEEEECCGGGCCHHHHHHHHHH
T ss_pred CceEECcHHHHHHHHHc----CCcEEEccHHHHHHHH-hCC-CeEEecCCccCCCCcEEEEECCCCCCCHHHHHHHHHH
Confidence 34557788999999998 5556666655544443 222 3333322 2234567888888766555555544443
No 250
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=59.00 E-value=1.1e+02 Score=32.26 Aligned_cols=132 Identities=14% Similarity=0.265 Sum_probs=79.1
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE--cCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII--GPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~s~~a 109 (940)
-.|+.+|...+. .-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+ .+. .
T Consensus 42 K~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~----~ 107 (355)
T 4a8p_A 42 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER----H 107 (355)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSS----H
T ss_pred CEEEEEecCCCh---hhHhhHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc----H
Confidence 468888877653 5788999999986 45556554444443333444444555565445444 332 2
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHH---HHHc--C--C--eEEEEEEEcCCcchhh
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI---VDHY--G--W--REVIAIYVDDDHGRNG 180 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~---l~~~--~--w--~~v~ii~~d~~~g~~~ 180 (940)
..+..+++..+||+|.-+ + +...| .++++++ .+++ | + .+|+++. | . .+.
T Consensus 108 ~~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~TI~E~~~~G~~l~glkva~vG-D-~--~rv 165 (355)
T 4a8p_A 108 HSIVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG-D-A--TQV 165 (355)
T ss_dssp HHHHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES-C-C--CHH
T ss_pred HHHHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC-C-C--chh
Confidence 344556677799999732 2 22223 3557776 3667 5 2 5666554 3 2 455
Q ss_pred HHHHHHHHhcCceeEEEee
Q 002301 181 IAALGDTLAAKRCRISFKA 199 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~ 199 (940)
...+...+...|.++....
T Consensus 166 a~Sl~~~~~~~G~~v~~~~ 184 (355)
T 4a8p_A 166 CFSLGLITTKMGMNFVHFG 184 (355)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 6777778888898876653
No 251
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=58.34 E-value=19 Score=35.30 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 497 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 497 idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
-++++.+.++.|.++++.+ ++-..++.++. +.+|+++.+-
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCC
Confidence 3677777777787765533 44678888888 8999987754
No 252
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=57.28 E-value=99 Score=32.00 Aligned_cols=80 Identities=11% Similarity=-0.039 Sum_probs=50.3
Q ss_pred CCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEe-CC-ccccCcceeecCCCCcchHHHHHHHHhcccccc
Q 002301 723 LNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIV-GQ-VFTKNGWGFAFPRDSPLAVDISTAILKLSENGD 800 (940)
Q Consensus 723 ~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~ 800 (940)
..+..+..+.+.+ |++++.+........+..+..++..+ .. .......+++++++++-.+.--+.|..+.+...
T Consensus 216 ~~~~~~~~~~f~~----G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~ 291 (351)
T 4edp_A 216 YSKSSDLANMFSN----GEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEV 291 (351)
T ss_dssp ECCHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHH
T ss_pred cCChHHHHHHHHc----CCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHH
Confidence 3567788889988 88888887776666555554444433 21 112233578999999877776677766655433
Q ss_pred hHHHHH
Q 002301 801 LQRIHD 806 (940)
Q Consensus 801 ~~~i~~ 806 (940)
...+.+
T Consensus 292 q~~~~~ 297 (351)
T 4edp_A 292 QEKTAK 297 (351)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 253
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=57.28 E-value=25 Score=36.06 Aligned_cols=80 Identities=11% Similarity=0.073 Sum_probs=58.0
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a 241 (940)
+++++|..+ ++|.....+.+.+++++.|..+.....-. .+.......++.+...+.|.||+.... ......++++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 567888754 67888889999999999999887632222 345556677777777889999987544 3456678888
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88775
No 254
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=56.29 E-value=75 Score=25.34 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=31.6
Q ss_pred cCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEE
Q 002301 145 TQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRIS 196 (940)
Q Consensus 145 ~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~ 196 (940)
.-.|...++....+++.+|-.-..+||..| ++.++.|..+...+|.++-
T Consensus 57 vvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevr 105 (134)
T 2l69_A 57 VVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVR 105 (134)
T ss_dssp ECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEE
T ss_pred EEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEE
Confidence 345556666666777777777666666333 4566777777777776654
No 255
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=56.06 E-value=35 Score=34.35 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=57.9
Q ss_pred CeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHH
Q 002301 164 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (940)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a 241 (940)
-+.|+++..+ +.|.......+.+++++.|..+.....- .+...-...++.+...+.|.||+..... ...++.+
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN---ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT---TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 4678888864 5577888999999999999888764322 2444556778888888999999987655 6677777
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 82 ~~~~i 86 (276)
T 3jy6_A 82 LHQQM 86 (276)
T ss_dssp HTTSS
T ss_pred HHCCC
Confidence 77664
No 256
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=55.65 E-value=57 Score=30.44 Aligned_cols=69 Identities=12% Similarity=-0.015 Sum_probs=42.6
Q ss_pred eeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeecCcceeeeeccccccccEEEEEe
Q 002301 493 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (940)
Q Consensus 493 ~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~ 572 (940)
..+-.+++..+.++.+ ++++... ++..++.+.+.+|..|+++..-.. ....+. ..++....++++++
T Consensus 14 ~~~l~~~l~~f~~~~~--v~l~l~~-------~~~~~~~~~l~~g~d~~~i~~~~~---~~~~l~-~~~l~~~~~~~v~~ 80 (208)
T 3fd3_A 14 GTWFLDAVSKFTGGSD--YLVNIAV-------DDQDHTVEWLRGGRVLAAVTAHDK---PVQGCR-VTPLGVLRYHATAS 80 (208)
T ss_dssp TTTHHHHHHHHHHTSS--CEEEEEE-------CCSSCHHHHHHTTSCSEEEESCCS---CCTTCE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhhcC--eEEEEEe-------CCcHhHHHHHhcCcceEEEecCCC---CCCCce-EEEccceEEEEEEC
Confidence 3566788899988885 4455554 446678999999955554432111 112222 45677777887776
Q ss_pred cc
Q 002301 573 VR 574 (940)
Q Consensus 573 ~~ 574 (940)
..
T Consensus 81 ~~ 82 (208)
T 3fd3_A 81 PD 82 (208)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 257
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=55.01 E-value=91 Score=29.65 Aligned_cols=70 Identities=11% Similarity=-0.003 Sum_probs=41.1
Q ss_pred cccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeC-C-ccccCcceeecCCCCcchHHHHHHHHhc
Q 002301 720 LVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG-Q-VFTKNGWGFAFPRDSPLAVDISTAILKL 795 (940)
Q Consensus 720 ~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~k~spl~~~~~~~il~l 795 (940)
...+++.+...+++.. |-..+++......+. ++. ..+..+. + ......+.++.+++......+...+..+
T Consensus 139 ~~~~~~~~~~~~~v~~----G~Gia~lp~~~~~~~-l~~-g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 210 (218)
T 2qsx_A 139 SVGFEHFYLACEAVRM----EKGLALLPDFMAQFS-ILR-GDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWL 210 (218)
T ss_dssp SBCCSSHHHHHHHHHT----TCCBEEEEHHHHHHH-HHT-TSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHh----CCCEEEecHHHHHHH-HHC-CCccccCccccCCCceEEEEeccccCCCHHHHHHHHHH
Confidence 3457889999999999 555566665443332 332 2344332 1 1223467888888877666665555444
No 258
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=54.96 E-value=37 Score=34.70 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=59.9
Q ss_pred CCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcE
Q 002301 683 PIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEF 762 (940)
Q Consensus 683 ~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l 762 (940)
.++++++|. +.+|++.--.....||. +.+.. ..++...-.-|..-.+ |-.|++++=.....-+-++ +|
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~aP~~------GlADaIvDivsTG~TLraN--gL 182 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGIS-FKSCLLNGSVEVAPRA------GLADAICDLVSTGATLEAN--GL 182 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCTTHHHHT------TSCSEEEEEESSCHHHHHT--TE
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeeccCC------CccceEEecccCHHHHHHC--CC
Confidence 445677776 78898887778889994 44554 3455544444444333 5567887755444433333 57
Q ss_pred EEeCCccccCcceeecCCCC--cc-hHHHHHHHHhccc
Q 002301 763 SIVGQVFTKNGWGFAFPRDS--PL-AVDISTAILKLSE 797 (940)
Q Consensus 763 ~~~~~~~~~~~~~~~~~k~s--pl-~~~~~~~il~l~e 797 (940)
..++..+ .+.-.++..|.+ +. .+.++..+.+|..
T Consensus 183 ~~ie~I~-~SsA~LI~n~~s~~~~k~~~i~~l~~rl~~ 219 (299)
T 1h3d_A 183 REVEVIY-RSKACLIQRDGEMEESKQQLIDKLLTRIQG 219 (299)
T ss_dssp EEEEEEE-EECEEEEEESSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeEEEE-eeEEEEEEeccccChhHHHHHHHHHHHHHH
Confidence 7775444 445555566766 23 2456666666643
No 259
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=54.78 E-value=1e+02 Score=32.20 Aligned_cols=132 Identities=14% Similarity=0.260 Sum_probs=74.2
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a 109 (940)
-.|+.+|...+. .-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++. .+.++=++. .
T Consensus 64 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~----~ 129 (339)
T 4a8t_A 64 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER----H 129 (339)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSS----H
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc----H
Confidence 468888877653 5678999999986 45555543334332222222222333333 333333432 2
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHH---HHHc--C--C--eEEEEEEEcCCcchhh
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI---VDHY--G--W--REVIAIYVDDDHGRNG 180 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~---l~~~--~--w--~~v~ii~~d~~~g~~~ 180 (940)
..+..+++..+||+|.-+ + +...| .++++++ .+++ | . .+|+++. |. .+.
T Consensus 130 ~~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~~~G~~l~glkva~vG-D~---~rv 187 (339)
T 4a8t_A 130 HSIVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG-DA---TQV 187 (339)
T ss_dssp HHHHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES-SC---CHH
T ss_pred HHHHHHHHhCCCCEEECC--C----CCcCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC-CC---chh
Confidence 344556677789999732 2 22223 3557776 3667 5 2 5666554 32 455
Q ss_pred HHHHHHHHhcCceeEEEee
Q 002301 181 IAALGDTLAAKRCRISFKA 199 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~ 199 (940)
+..+...+...|.++....
T Consensus 188 a~Sl~~~~~~~G~~v~~~~ 206 (339)
T 4a8t_A 188 CFSLGLITTKMGMNFVHFG 206 (339)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 6777778888888876653
No 260
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=54.67 E-value=47 Score=33.63 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=58.7
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCC----cHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN----RGPVVF 238 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~----~~~~~l 238 (940)
+.|+++..+ +.|.....+.+.+++++.|..+.....- .+...-...++.+...+.|.||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN---NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999864 6688889999999999999988764322 2445556777888888999999875432 345677
Q ss_pred HHHHHcCC
Q 002301 239 HVAQYLGM 246 (940)
Q Consensus 239 ~~a~~~g~ 246 (940)
+++.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 88887775
No 261
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=54.57 E-value=67 Score=32.55 Aligned_cols=46 Identities=22% Similarity=0.100 Sum_probs=31.7
Q ss_pred CCHhHHHHHHHcCcccEEeeceeeecCcceeeeeccccccccEEEEEecc
Q 002301 525 PSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVR 574 (940)
Q Consensus 525 ~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~ 574 (940)
++...++..+.+|++|+++...... ...+. ..|+....+++++++.
T Consensus 127 ~~~~~~~~~l~~g~~D~~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~ 172 (303)
T 3isp_A 127 EDQDHSARLLREGVAMGAVTTERNP---VPGCR-VHPLGEMRYLPVASRP 172 (303)
T ss_dssp CCHHHHHHHHHTTSCSEEEESCCSC---CTTEE-EEEEEEEEEEEEECHH
T ss_pred cChHHHHHHHHcCcceEEEecCCCC---CCCeE-EEEccceeEEEEecch
Confidence 4578899999999999987633221 12222 4567778888888765
No 262
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=54.28 E-value=24 Score=35.42 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=56.5
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 242 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~ 242 (940)
+.|+++..+ +.|.....+.+.+++++.|..+.....- .+.......++.+...+.|.||+..........++.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSD---DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 468888864 5577888999999999999888764321 24455567778888889999998765433355667777
Q ss_pred HcCC
Q 002301 243 YLGM 246 (940)
Q Consensus 243 ~~g~ 246 (940)
+.|+
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7664
No 263
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=54.07 E-value=25 Score=35.62 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 86 LAEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 86 ~~~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
.+.+..|.+.++.+|+=+-++..+ .+..+-+..++|+|.
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvig 127 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEc
Confidence 344555656699999876666554 566677778999996
No 264
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=53.92 E-value=75 Score=32.24 Aligned_cols=57 Identities=12% Similarity=0.273 Sum_probs=37.9
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
.++++||.. +|.+ .-+...+.+.+.+.+|+++++ .+ ++-.-+...|.+|++|+....
T Consensus 15 ~~~I~Ig~~---~~te----------~~i~~~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~AL~~G~iD~~~e~ 71 (280)
T 3tmg_A 15 LKSVKIGYV---NWGG----------ETAATNVLKVVFEKMGYNAEI--FS-------VTTSIMYQYLASGKIDGTVSS 71 (280)
T ss_dssp CEEEEEEEC---CCHH----------HHHHHHHHHHHHHHTTEEEEE--EE-------CCHHHHHHHHHTTSSSEEEEE
T ss_pred CCCEEEEcC---CCch----------HHHHHHHHHHHHHHCCCceEE--EE-------CCcHHHHHHHHCCCCcEEEec
Confidence 457888765 3321 112345666777779988665 33 234678899999999998763
No 265
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=53.90 E-value=94 Score=31.29 Aligned_cols=116 Identities=12% Similarity=0.092 Sum_probs=71.9
Q ss_pred EEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhHH
Q 002301 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTSH 110 (940)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a~ 110 (940)
+||++.............|+..|+++.+ + ..... +.....+...+.+.+.+++.. ++.||+.... ..+.
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g----~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~A~ 198 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHG----L--SASAT--VVTGGTTETEGAEGMHTLLEMPTPPTAVVAFND-RCAT 198 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTT----C--GGGEE--EECCCSSHHHHHHHHHHHHTSSSCCSEEEESSH-HHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCC----C--CCCcc--EEECCCCHHHHHHHHHHHHcCCCCCCEEEECCh-HHHH
Confidence 5777765543344566788888888742 1 11122 233556778888888888875 7889997543 4444
Q ss_pred HHHHhhccCC------ccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH
Q 002301 111 VVSHVANELQ------VPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 111 ~va~~~~~~~------vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l 159 (940)
.+...+.+.+ |.+|++.... +.....|-+..+..+...+++..++++
T Consensus 199 g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l 251 (289)
T 3k9c_A 199 GVLDLLVRSGRDVPADISVVGYDDSR--LARIPHVQMTTISQDATHMAEAAVDGA 251 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECCT--TTTCTTTCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCHH--HHhcCCCCcceEecCHHHHHHHHHHHH
Confidence 4445554443 3478876553 333334556667777777888877765
No 266
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=53.11 E-value=49 Score=33.38 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=26.3
Q ss_pred HHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 88 EALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 88 ~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
.+..|.+.++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 57 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 57 MTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 34445555899888755555544677777788999996
No 267
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=52.97 E-value=38 Score=34.34 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=57.7
Q ss_pred CCeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHH
Q 002301 163 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFH 239 (940)
Q Consensus 163 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~ 239 (940)
+=+.|+++..+ +.|.......+.+++++.|..+.....- .+.......++.+...+.|.||+.... ......++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ---NSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS---SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC---CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 34678888854 5577788999999999999988764322 344555677778878889999987543 44447788
Q ss_pred HHHHcCC
Q 002301 240 VAQYLGM 246 (940)
Q Consensus 240 ~a~~~g~ 246 (940)
++.+.|+
T Consensus 84 ~~~~~~i 90 (293)
T 3l6u_A 84 EAKKAGI 90 (293)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8887775
No 268
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=51.71 E-value=10 Score=37.64 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=52.9
Q ss_pred eeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeecCcc---eeeeeccccccccEEE
Q 002301 493 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT---KMADFTQPYIESGLVV 569 (940)
Q Consensus 493 ~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~---~~v~ft~p~~~~~~~~ 569 (940)
.|+.-+|+..+.++.|.++.+.+. .-..++.++.+|.+|+++..-...++.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAV---------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEE---------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEc---------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 467778888998888877665553 3677899999999999877443332211 1112246889999999
Q ss_pred EEeccCC
Q 002301 570 VAPVRKL 576 (940)
Q Consensus 570 vv~~~~~ 576 (940)
++|+..+
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9998763
No 269
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=51.51 E-value=1.1e+02 Score=31.03 Aligned_cols=125 Identities=6% Similarity=0.054 Sum_probs=66.1
Q ss_pred HHHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeE
Q 002301 87 AEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWRE 166 (940)
Q Consensus 87 ~~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~ 166 (940)
+.+..|.++++.+|+-+-++..+.++..+-+..++|+|... . .++...++.-+-++
T Consensus 60 ~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigii--e----------------------p~~~~A~~~~~~~r 115 (276)
T 2dwu_A 60 EMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVI--H----------------------PGARAAIKVTKKGK 115 (276)
T ss_dssp HHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESH--H----------------------HHHHHHHHHCSSSE
T ss_pred HHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEecc--H----------------------HHHHHHHHhcCCCe
Confidence 34444555589999875555554567777777899998520 1 11111223345677
Q ss_pred EEEEEEcCCcchhhHHHHHHHHhc--CceeEEEeecCCC-------C-C----ChhHHHHHHHHHhcCCCeEEEEEecC-
Q 002301 167 VIAIYVDDDHGRNGIAALGDTLAA--KRCRISFKAPLSV-------E-A----TEDEITDLLVKVALTESRIIVVHTHY- 231 (940)
Q Consensus 167 v~ii~~d~~~g~~~~~~l~~~l~~--~g~~v~~~~~~~~-------~-~----~~~~~~~~l~~l~~~~~~viv~~~~~- 231 (940)
|+++......-.. .+++.+++ .+++|... ..+. + . ....+...+..+++.++|.||+.|..
T Consensus 116 IgVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~-~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh~ 191 (276)
T 2dwu_A 116 IGVIGTVGTIQSN---MYEKALHELDTYLKVHSH-ACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHY 191 (276)
T ss_dssp EEEEECHHHHHTT---HHHHHHHHHCTTCEEEEE-ECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTTG
T ss_pred EEEEeChhhhhhH---HHHHHHHHhCCCCEEEee-eCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCCH
Confidence 8887754321111 12233332 24444322 1121 0 1 11245666777777789999998765
Q ss_pred CcHHHHHH
Q 002301 232 NRGPVVFH 239 (940)
Q Consensus 232 ~~~~~~l~ 239 (940)
......++
T Consensus 192 p~l~~~i~ 199 (276)
T 2dwu_A 192 PLLESYIK 199 (276)
T ss_dssp GGGHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 270
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=51.22 E-value=28 Score=36.92 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=63.3
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC--C
Q 002301 155 IAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--N 232 (940)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~--~ 232 (940)
+.++++.+|.+++.+|+....+. ...+.+.+.+++.|+++......+ ..+.+.+... ..+++.+.|+||-.+.+ -
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~ 101 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-NIDFDEIGTN-AFKIPAEVDALIGIGGGKAI 101 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-CCBHHHHHHH-HTTSCTTCCEEEEEESHHHH
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-CCCHHHHHHH-HHhhhcCCCEEEEECChHHH
Confidence 56677888889998888655433 467888899998888765333233 3466777777 77888889999876543 4
Q ss_pred cHHHHHHHHHHcCCCCCCeEEEecCc
Q 002301 233 RGPVVFHVAQYLGMLGTGYVWIATSW 258 (940)
Q Consensus 233 ~~~~~l~~a~~~g~~~~~~~wi~~~~ 258 (940)
++.++.... .+ ..++-|-|..
T Consensus 102 D~aK~vA~~--~~---~p~i~IPTT~ 122 (354)
T 3ce9_A 102 DAVKYMAFL--RK---LPFISVPTST 122 (354)
T ss_dssp HHHHHHHHH--HT---CCEEEEESCC
T ss_pred HHHHHHHhh--cC---CCEEEecCcc
Confidence 555555422 23 3455566554
No 271
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=51.20 E-value=54 Score=34.11 Aligned_cols=88 Identities=5% Similarity=-0.079 Sum_probs=58.1
Q ss_pred HHHHHHcCCeEEEEEEEc----CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC
Q 002301 156 AEIVDHYGWREVIAIYVD----DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (940)
Q Consensus 156 ~~~l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~ 231 (940)
+.-++.-.-+.|+++..+ +.|.......+.+++++.|..+.....- .+...-...++.+...+.|.||+....
T Consensus 53 a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 53 ARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK---HSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp -------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECT---TSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred HHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 333444456789998865 5577788999999999999987764321 234444567777878899999998655
Q ss_pred CcHHHHHHHHHHcCC
Q 002301 232 NRGPVVFHVAQYLGM 246 (940)
Q Consensus 232 ~~~~~~l~~a~~~g~ 246 (940)
.....+...+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQ 144 (338)
T ss_dssp SCHHHHHHHHHHCSS
T ss_pred CChHHHHHHHHcCCC
Confidence 555556666666653
No 272
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=51.04 E-value=70 Score=29.72 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=50.1
Q ss_pred CCeEEEEEEEcCCcch---hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC-CCeEEEEEec
Q 002301 163 GWREVIAIYVDDDHGR---NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTH 230 (940)
Q Consensus 163 ~w~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viv~~~~ 230 (940)
.--++++|...|+-|+ .....+.+.+++.|+++.....++ .+.+.+...+++..+. ++|+||..+.
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVK--ENRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 3357888887777664 235678888999999998877777 6778888888887654 6899998854
No 273
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=50.63 E-value=22 Score=37.98 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=63.0
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CC
Q 002301 155 IAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YN 232 (940)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~ 232 (940)
+.++++.+| +++.+|+....+. ...+.+.+.|++.|+++.+ ..+......+++......+++.++|+||-.+. .-
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 99 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTL 99 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 556777788 8998888544332 4678888999989988754 33443445567888888888889999997654 34
Q ss_pred cHHHHHHHHHHcCCCCCCeEEEecC
Q 002301 233 RGPVVFHVAQYLGMLGTGYVWIATS 257 (940)
Q Consensus 233 ~~~~~l~~a~~~g~~~~~~~wi~~~ 257 (940)
++..+.... .| ..++-|-|.
T Consensus 100 D~aK~iA~~--~~---~p~i~IPTT 119 (370)
T 1jq5_A 100 DTAKAVADE--LD---AYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHH--HT---CEEEEEESS
T ss_pred HHHHHHHHh--cC---CCEEEeccc
Confidence 555555422 23 345555554
No 274
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=50.53 E-value=52 Score=33.44 Aligned_cols=84 Identities=6% Similarity=-0.063 Sum_probs=59.2
Q ss_pred CCeEEEEEEEc---CCcchhhHHHHHHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCC-cHHHH
Q 002301 163 GWREVIAIYVD---DDHGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVV 237 (940)
Q Consensus 163 ~w~~v~ii~~d---~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~-~~~~~ 237 (940)
+=+.|+++..+ +.|.......+.+++++. |..+..........+.......++.+...+.|.||+..... .....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 86 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF 86 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence 44678888754 567788899999999988 76665543322123455566778888888999999886543 34667
Q ss_pred HHHHHHcCC
Q 002301 238 FHVAQYLGM 246 (940)
Q Consensus 238 l~~a~~~g~ 246 (940)
++++.+.|+
T Consensus 87 ~~~~~~~~i 95 (304)
T 3gbv_A 87 TDALNELGI 95 (304)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 888887775
No 275
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=50.10 E-value=40 Score=34.18 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=25.7
Q ss_pred HHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 88 EALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 88 ~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
.+..|.+.++.+|+-+-++..+.++..+-+..++|+|.
T Consensus 66 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 33445455899888755555545566777778999996
No 276
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=50.07 E-value=32 Score=34.81 Aligned_cols=79 Identities=5% Similarity=-0.055 Sum_probs=57.3
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a 241 (940)
+.|+++..+ +.|.....+.+.+++++.|..+.....- .+.......++.+...+.|.||+.... ......++.+
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG---RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 5577788899999999999888765321 244555667777777889999987543 3455678888
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87775
No 277
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=49.85 E-value=41 Score=34.87 Aligned_cols=79 Identities=8% Similarity=0.015 Sum_probs=57.7
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCC-cHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~-~~~~~l~~a 241 (940)
+.|+++..+ +.|.......+.+++++.|..+..... ..+...-...++.+...++|.||+..... .....++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 578888864 678888899999999999998776542 12444455667777777899999875443 456778888
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88774
No 278
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=49.19 E-value=1.6e+02 Score=30.44 Aligned_cols=132 Identities=12% Similarity=0.172 Sum_probs=74.0
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE--cCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII--GPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~s~~a 109 (940)
-.|+.+|...+ ..-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+ .+. .
T Consensus 49 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~----~ 114 (323)
T 3gd5_A 49 KVLGLVFLKAS---TRTRVSFTVAMYQL-------GGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFA----Q 114 (323)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEC----------CCHHHHHHHHTTTCSEEEEECSS----H
T ss_pred CEEEEEecCCC---cchHhhHHHHHHHc-------CCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC----h
Confidence 36888887765 36788999999986 35555554444433333334444455555455554 432 2
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCcchhhHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 183 (940)
..+..+++..+||+|.-+. + ...| .+++++++ +++| ..+|+++. |. .+.+..
T Consensus 115 ~~~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG-D~---~rva~S 172 (323)
T 3gd5_A 115 TELEEYAHYAGIPVINALT-D-----HEHP------------CQVVADLLTIRENFGRLAGLKLAYVG-DG---NNVAHS 172 (323)
T ss_dssp HHHHHHHHHHCSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES-CC---CHHHHH
T ss_pred hHHHHHHHhCCCCEEeCCC-C-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC-CC---CcHHHH
Confidence 3445566677899997332 2 2223 35567663 5554 56777664 32 455666
Q ss_pred HHHHHhcCceeEEEee
Q 002301 184 LGDTLAAKRCRISFKA 199 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~ 199 (940)
+...+...|.++....
T Consensus 173 l~~~~~~~G~~v~~~~ 188 (323)
T 3gd5_A 173 LLLGCAKVGMSIAVAT 188 (323)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 6677777888876654
No 279
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=48.97 E-value=1.5e+02 Score=30.50 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=75.1
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a 109 (940)
-.|+.+|.-.+ ..-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++. .+.++=.+. .
T Consensus 37 k~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~-~--- 102 (307)
T 3tpf_A 37 KTLAMIFEKNS---TRTRMAFELAITEL-------GGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNK-H--- 102 (307)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSC-H---
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC-h---
Confidence 34788887765 35788999999986 45555554334332222222222333333 333333332 2
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC-Ce---EEEEEEEcCCcchhhHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG-WR---EVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~-w~---~v~ii~~d~~~g~~~~~ 182 (940)
..+..+++..+||+|.-+ ++ ..+| .+++++++ +++| ++ +|+++. | +.+...
T Consensus 103 ~~~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vG-D---~~~va~ 160 (307)
T 3tpf_A 103 ETLLEFARYSKAPVINAL-SE-----LYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIG-D---SNNMCN 160 (307)
T ss_dssp HHHHHHHHHCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEES-C---SSHHHH
T ss_pred HHHHHHHHhCCCCEEeCC-CC-----CcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEc-C---CCccHH
Confidence 344566677799999732 22 2223 35577763 5565 34 666554 3 345777
Q ss_pred HHHHHHhcCceeEEEee
Q 002301 183 ALGDTLAAKRCRISFKA 199 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~ 199 (940)
.+...+...|.++....
T Consensus 161 Sl~~~~~~~G~~v~~~~ 177 (307)
T 3tpf_A 161 SWLITAAILGFEISIAM 177 (307)
T ss_dssp HHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 78888888898876654
No 280
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=48.32 E-value=38 Score=33.86 Aligned_cols=121 Identities=11% Similarity=0.038 Sum_probs=71.5
Q ss_pred ceEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCc
Q 002301 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDA 106 (940)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s 106 (940)
+.-+||++.... .........|++.|+++. +|.++.. ......+...+.+.+.+++.+ ++.||+... .
T Consensus 126 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d 196 (276)
T 3ksm_A 126 KERNIALLRLRAGNASTDQREQGFLDVLRKH-------DKIRIIA-APYAGDDRGAARSEMLRLLKETPTIDGLFTPN-E 196 (276)
T ss_dssp SCEEEEECBCCTTCHHHHHHHHHHHHHHTTC-------TTEEEEE-CCBCCSSHHHHHHHHHHHHHHCSCCCEEECCS-H
T ss_pred CCceEEEEEcCCCchhHHHHHHHHHHHHHhC-------CCcEEEE-EecCCCcHHHHHHHHHHHHHhCCCceEEEECC-c
Confidence 456788886432 334455667888777552 3556553 344556788888888888876 689999854 4
Q ss_pred hhHHHHHHhhccCCc----cEEeeecCCCCCCCCCCCce-EEecCChHHHHHHHHHHH
Q 002301 107 VTSHVVSHVANELQV----PLLSFSATDPTLSSLQFPYF-VRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 107 ~~a~~va~~~~~~~v----P~Is~~at~~~ls~~~~p~~-~r~~psd~~~~~ai~~~l 159 (940)
..+..+...+.+.++ .++++............|.+ ..+..+...++...++++
T Consensus 197 ~~a~g~~~al~~~g~p~di~vig~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l 254 (276)
T 3ksm_A 197 STTIGALVAIRQSGMSKQFGFIGFDQTEELEAAMYAGEISNLVVQNPEYMGYLAVQRA 254 (276)
T ss_dssp HHHHHHHHHHHHTTCTTSSEEEEESCCHHHHHHHHTTSSSEEEECCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHcCCCCCeEEEEeCCCHHHHHHHHcCCceEEEEeCHHHhHHHHHHHH
Confidence 445555566666654 47766544322111112333 444555566666666654
No 281
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=47.76 E-value=46 Score=33.92 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=56.9
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a 241 (940)
.+|+++..+ ++|.....+.+.+++++.|..+..... .+.......++.+...+.|.||+.... ......++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 367888754 567888899999999999988865432 244555677788877889999988644 3445667888
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88774
No 282
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=47.68 E-value=40 Score=35.43 Aligned_cols=80 Identities=5% Similarity=0.014 Sum_probs=56.2
Q ss_pred CeEEEEEEEc---CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHH
Q 002301 164 WREVIAIYVD---DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVF 238 (940)
Q Consensus 164 w~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l 238 (940)
-.+|++|..+ +.|.....+.+.+++++.|..+..... . .+.......+..+.. .++|.||+.........++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA-E--RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC-C--CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH
Confidence 3578888864 267888899999999999988776522 1 234444556666665 5899999876445566777
Q ss_pred HHHHHcCC
Q 002301 239 HVAQYLGM 246 (940)
Q Consensus 239 ~~a~~~g~ 246 (940)
+.+.+.|+
T Consensus 80 ~~~~~~gi 87 (350)
T 3h75_A 80 RLSQGSGI 87 (350)
T ss_dssp HHHTTSCC
T ss_pred HHHHhCCC
Confidence 77777664
No 283
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=47.30 E-value=48 Score=33.52 Aligned_cols=79 Identities=4% Similarity=-0.056 Sum_probs=54.5
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a 241 (940)
+.|+++..+ +.|.......+.+++++.|.++..... ..+.......++.+...+.|.||+.... ......++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 467888754 667888899999999999988765422 1234444566777777889999887543 3334567777
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|.
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 284
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=47.00 E-value=2.4e+02 Score=28.71 Aligned_cols=83 Identities=4% Similarity=-0.114 Sum_probs=46.5
Q ss_pred cccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCccccCcceeecCCCCcchHHHHHHHHhccccc
Q 002301 720 LVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENG 799 (940)
Q Consensus 720 ~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G 799 (940)
+..+.+..+..+.+.+ |++++.+...........+..++.++-+.......+++++|+++-.+.--+.|.-|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~----G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s~- 250 (320)
T 4euo_A 176 IIWWSGGAQSQQLIAS----AEAPFGSVWNGRMTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATSA- 250 (320)
T ss_dssp EEEECSHHHHHHHHHT----TSSCEEEEEHHHHHHHHHTTCCCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTSH-
T ss_pred eeEeCCCchHHHHHHc----CCEEEEEeecHHHHHHHhCCCCeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhCH-
Confidence 3445566788888988 78777666554443333333333332222222335788999998655555555555443
Q ss_pred chHHHHHh
Q 002301 800 DLQRIHDK 807 (940)
Q Consensus 800 ~~~~i~~k 807 (940)
..+....+
T Consensus 251 e~q~~~~~ 258 (320)
T 4euo_A 251 QAQADMAT 258 (320)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33443333
No 285
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=46.98 E-value=1.4e+02 Score=31.15 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=73.0
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a 109 (940)
-.|+.+|...+ ..-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++. .+.++=++. .
T Consensus 71 K~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~-~--- 136 (340)
T 4ep1_A 71 KILGLIFDKHS---TRTRVSFEAGMVQL-------GGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFS-H--- 136 (340)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSC-H---
T ss_pred ceEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC-h---
Confidence 35788887665 36678999999986 45555544333332222222222233333 333333432 2
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCcchhhHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 183 (940)
..+..+++..+||+|.- .++ ...| .+++++++ +++| ..+|+++. | . .+.+..
T Consensus 137 ~~~~~lA~~~~vPVINa-g~~-----~~HP------------tQaLaDl~TI~E~~G~l~glkva~vG-D-~--~nva~S 194 (340)
T 4ep1_A 137 ADVEELAKESSIPVING-LTD-----DHHP------------CQALADLMTIYEETNTFKGIKLAYVG-D-G--NNVCHS 194 (340)
T ss_dssp HHHHHHHHHCSSCEEEE-ECS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES-C-C--CHHHHH
T ss_pred hHHHHHHHhCCCCEEeC-CCC-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC-C-C--chhHHH
Confidence 34456677779999973 222 2223 35567663 5555 46777664 2 2 446777
Q ss_pred HHHHHhcCceeEEEee
Q 002301 184 LGDTLAAKRCRISFKA 199 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~ 199 (940)
+...+...|.++....
T Consensus 195 l~~~~~~~G~~v~~~~ 210 (340)
T 4ep1_A 195 LLLASAKVGMHMTVAT 210 (340)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 7778888888876654
No 286
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=46.96 E-value=75 Score=31.99 Aligned_cols=84 Identities=4% Similarity=-0.113 Sum_probs=53.3
Q ss_pred HHHcCCeEEEEEEEc----CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcH
Q 002301 159 VDHYGWREVIAIYVD----DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG 234 (940)
Q Consensus 159 l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~ 234 (940)
++.-.-+.|+++..+ +.|.......+.+++++.|..+.... ...+.......++.+...+.+.||+.......
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 90 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV 90 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh
Confidence 333345678888754 46788889999999999998876532 11234445567777777889999887554332
Q ss_pred HHHHHHHHH-cCC
Q 002301 235 PVVFHVAQY-LGM 246 (940)
Q Consensus 235 ~~~l~~a~~-~g~ 246 (940)
..++.+.+ .|.
T Consensus 91 -~~~~~l~~~~~i 102 (296)
T 3brq_A 91 -DEIDDIIDAHSQ 102 (296)
T ss_dssp -HHHHHHHHTCSS
T ss_pred -HHHHHHHhcCCC
Confidence 45566666 553
No 287
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=46.96 E-value=46 Score=34.00 Aligned_cols=86 Identities=8% Similarity=-0.020 Sum_probs=54.8
Q ss_pred HHHHHcCCeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcH
Q 002301 157 EIVDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG 234 (940)
Q Consensus 157 ~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~ 234 (940)
+-++.-+=+.|++|..+ +.|.....+.+.+++++.|..+.....- .+.......++.+...+.|.||+.......
T Consensus 8 r~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 84 (303)
T 3kke_A 8 RALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID---APPRGTQQLSRLVSEGRVDGVLLQRREDFD 84 (303)
T ss_dssp ---------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC---STTHHHHHHHHHHHSCSSSEEEECCCTTCC
T ss_pred HHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCcEEEEecCCCCc
Confidence 33444445678888864 5688889999999999999887754322 234445677888888899999997654333
Q ss_pred HHHHHHHHHcCC
Q 002301 235 PVVFHVAQYLGM 246 (940)
Q Consensus 235 ~~~l~~a~~~g~ 246 (940)
...+..+.+ |+
T Consensus 85 ~~~~~~l~~-~i 95 (303)
T 3kke_A 85 DDMLAAVLE-GV 95 (303)
T ss_dssp HHHHHHHHT-TS
T ss_pred HHHHHHHhC-CC
Confidence 226666666 54
No 288
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=46.73 E-value=13 Score=36.98 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=52.1
Q ss_pred eeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeecCcc---eeeeeccccccccEEE
Q 002301 493 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT---KMADFTQPYIESGLVV 569 (940)
Q Consensus 493 ~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~---~~v~ft~p~~~~~~~~ 569 (940)
.|+.-+|+..+.++.|.++.+.+. .-..+++++.+|.+|+.+..-...++.. .+..-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAA---------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEE---------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEEc---------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 466778888898888877655553 3677899999999999876443322211 1112246888899999
Q ss_pred EEeccCC
Q 002301 570 VAPVRKL 576 (940)
Q Consensus 570 vv~~~~~ 576 (940)
++|+..+
T Consensus 89 V~P~~~P 95 (237)
T 3muq_A 89 VGPKADP 95 (237)
T ss_dssp EECTTCT
T ss_pred EEeCCCh
Confidence 9998763
No 289
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=46.19 E-value=2.2e+02 Score=29.50 Aligned_cols=132 Identities=13% Similarity=0.170 Sum_probs=73.7
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEE--EEEecCCCCHHHHHHHHHHHHhcCcEEEE--cCCCch
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLK--LQMQDCNHSGFLALAEALHLMEGQTVAII--GPQDAV 107 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~--~~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~s~ 107 (940)
-.|+.+|.-.+ ..-+.+++.|+.++ +|..+. +.. ++.-.-.+.+.-..+.++.-+++|+ .+. .
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~~~l~~-~ss~~kgEsl~DTarvls~~~D~iviR~~~-~- 111 (328)
T 3grf_A 45 KTLLAFFAKPS---LRTRVSLETAMTRL-------GGHAIYYELGA-NSNVGGKETVQDTAEVFSRMVDICTARLAT-K- 111 (328)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHH-------TCEEEEEEC-----------CHHHHHHHHTTTCSEEEEECSS-H-
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHC-------CCeEEccccCc-cccCCCCCCHHHHHHHHHhhCCEEEEecCC-h-
Confidence 46888887765 36788999999997 344444 433 4443333445555556666455544 332 2
Q ss_pred hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC----------CeEEEEEEEcC
Q 002301 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG----------WREVIAIYVDD 174 (940)
Q Consensus 108 ~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~----------w~~v~ii~~d~ 174 (940)
..+..+++..+||+|. |.+ +..+| .+++++++ +++| -.+|+++. |.
T Consensus 112 --~~~~~lA~~~~vPVIN--ag~----~~~HP------------tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vG-D~ 170 (328)
T 3grf_A 112 --EMMREMAQHASVPCIN--ALD----DFGHP------------LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG-DS 170 (328)
T ss_dssp --HHHHHHHHHCSSCEEE--SSC----SSCCH------------HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEES-CC
T ss_pred --hHHHHHHHhCCCCEEe--CCC----CCCCc------------HHHHHHHHHHHHHhCCccccccccCCcEEEEeC-CC
Confidence 3445566777899996 322 22223 35566653 5555 34666554 32
Q ss_pred CcchhhHHHHHHHHhcCceeEEEee
Q 002301 175 DHGRNGIAALGDTLAAKRCRISFKA 199 (940)
Q Consensus 175 ~~g~~~~~~l~~~l~~~g~~v~~~~ 199 (940)
.. +.+..+...+...|.++....
T Consensus 171 -~~-~va~Sl~~~~~~~G~~v~~~~ 193 (328)
T 3grf_A 171 -MN-NVTYDLMRGCALLGMECHVCC 193 (328)
T ss_dssp -SS-HHHHHHHHHHHHHTCEEEEEC
T ss_pred -Cc-chHHHHHHHHHHcCCEEEEEC
Confidence 22 467777777888888776543
No 290
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=45.87 E-value=38 Score=34.97 Aligned_cols=80 Identities=11% Similarity=0.026 Sum_probs=55.2
Q ss_pred eEEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHH
Q 002301 165 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a 241 (940)
++|+++.. ++.|.....+.+.+++++.|+++.... +...+...-...++.+...+.+.||+.... ......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 56888864 456777888899999999998876431 212234444566777777889998887543 3346678888
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|.
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 87774
No 291
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=45.81 E-value=58 Score=35.23 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=57.8
Q ss_pred CeEEEEEEEcCCcch--hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC------CcHH
Q 002301 164 WREVIAIYVDDDHGR--NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY------NRGP 235 (940)
Q Consensus 164 w~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~------~~~~ 235 (940)
-++|+|+|. +.||. ..++.+.+.+.+.|+++....... ...++...++..+. +++.+++.+.. +...
T Consensus 265 ~~~v~I~Y~-S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d--~~~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~ 339 (410)
T 4dik_A 265 KGKVTVIYD-SMYGFVENVMKKAIDSLKEKGFTPVVYKFSD--EERPAISEILKDIP--DSEALIFGVSTYEAEIHPLMR 339 (410)
T ss_dssp TTEEEEEEE-CSSSHHHHHHHHHHHHHHHTTCEEEEEEECS--SCCCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHH
T ss_pred ccceeeEEe-cccChHHHHHHHHHHHHHhcCCceEEEEecc--CCCCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHH
Confidence 357888884 44554 457899999999998876544444 34455666666665 45777776553 2334
Q ss_pred HHHHHHHHcCCCCCCeEEEecCccc
Q 002301 236 VVFHVAQYLGMLGTGYVWIATSWLS 260 (940)
Q Consensus 236 ~~l~~a~~~g~~~~~~~wi~~~~~~ 260 (940)
.++.........++.-..+++-+|.
T Consensus 340 ~~l~~l~~~~~~~K~~~~FGSyGWs 364 (410)
T 4dik_A 340 FTLLEIIDKANYEKPVLVFGVHGWA 364 (410)
T ss_dssp HHHHHHHHHCCCCCEEEEEEECCCC
T ss_pred HHHHHHHhcccCCCEEEEEECCCCC
Confidence 5666666666555444556665554
No 292
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=45.69 E-value=50 Score=33.11 Aligned_cols=115 Identities=16% Similarity=0.095 Sum_probs=70.1
Q ss_pred EEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhHH
Q 002301 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTSH 110 (940)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a~ 110 (940)
+|+++...... ......|+..|+++.+ .++.........+...+.+.+.+++.. ++.||+.... ..+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSND-ITAI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSH-HHHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECCh-HHHH
Confidence 57877766544 5566788888888742 222222244556778888888888876 5889998543 4444
Q ss_pred HHHHhhccCC------ccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH
Q 002301 111 VVSHVANELQ------VPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 111 ~va~~~~~~~------vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l 159 (940)
.+...+.+.+ +.+|++..+. +.....|-+..+..+...++...++++
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l 242 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLL 242 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHH
Confidence 4444444433 4477765433 222233555556667777777777664
No 293
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=45.63 E-value=40 Score=34.36 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=57.6
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec-CCcHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~-~~~~~~~l~~a 241 (940)
.+|+++..+ +.|.......+.+++++.|..+.....-.. .+.......++.+...+.|.||+... .......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 357777754 668888899999999999998876532110 14455567778888888999988744 34446678888
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 88775
No 294
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=42.89 E-value=68 Score=32.41 Aligned_cols=79 Identities=11% Similarity=-0.067 Sum_probs=54.2
Q ss_pred CeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHH
Q 002301 164 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (940)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a 241 (940)
=+.|++|..+ +.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+...... ...++++
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l 91 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS-D--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEF 91 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHH
Confidence 3578888864 567778889999999999988765421 1 23444556777777788999988764322 3456666
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|.
T Consensus 92 ~~~~i 96 (289)
T 2fep_A 92 KRSPV 96 (289)
T ss_dssp HHSSS
T ss_pred HhcCC
Confidence 66663
No 295
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=42.37 E-value=37 Score=34.51 Aligned_cols=84 Identities=8% Similarity=-0.012 Sum_probs=53.9
Q ss_pred HHHcCCeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHH
Q 002301 159 VDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPV 236 (940)
Q Consensus 159 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~ 236 (940)
++.-.=+.|+++..+ +.|.....+.+.+++++.|..+..... . .+.......++.+...+.|.||+.........
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~ 91 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-E--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHP 91 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSSCTTCH
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHH
Confidence 344445678888754 567778889999999999988775421 1 23344456677777788999988754432233
Q ss_pred HHHHHHHcC
Q 002301 237 VFHVAQYLG 245 (940)
Q Consensus 237 ~l~~a~~~g 245 (940)
+++.+.+.|
T Consensus 92 ~~~~~~~~~ 100 (293)
T 2iks_A 92 FYQRWANDP 100 (293)
T ss_dssp HHHTTTTSS
T ss_pred HHHHHHhCC
Confidence 555555444
No 296
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=42.32 E-value=36 Score=34.87 Aligned_cols=87 Identities=6% Similarity=0.017 Sum_probs=56.0
Q ss_pred HHHHHHcCCeEEEEEEEc-------CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE
Q 002301 156 AEIVDHYGWREVIAIYVD-------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 228 (940)
Q Consensus 156 ~~~l~~~~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~ 228 (940)
++-++.-.-+.|+++..+ +.|.....+.+.+++++.|..+... ....+.......++.+...+.|.||+.
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 333445556789988866 4577788899999999999887653 211223344567777888899999987
Q ss_pred ecCCcHHHHHHHHHHcCC
Q 002301 229 THYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 229 ~~~~~~~~~l~~a~~~g~ 246 (940)
..... ...++.+.+.|+
T Consensus 91 ~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 91 YSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SCBTT-CHHHHHHHHTTC
T ss_pred CCcCC-cHHHHHHHHcCC
Confidence 54332 256677777664
No 297
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=42.22 E-value=22 Score=36.10 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=58.8
Q ss_pred CCCChhHh-hhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCc
Q 002301 683 PIKGIDSL-RSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCE 761 (940)
Q Consensus 683 ~i~si~dL-~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~ 761 (940)
.+++++|| . +.+|++.--.....||. +.+.+ .+++...-.-|.. +..|-.|++++-.....-+-.+ +
T Consensus 105 ~~~~~~~l~~--~~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~a------p~~GlADaIvDivsTG~TLraN--g 172 (289)
T 2vd3_A 105 TIRGPEDIPR--GAVIATEFPGITENYLR-EHGID-AEVVELTGSTEIA------PFIGVADLITDLSSTGTTLRMN--H 172 (289)
T ss_dssp SCCSGGGCCT--TCEEEESCHHHHHHHHH-HTTCC-CEEEECSSCGGGT------TTTTSCSEEEEEESSTHHHHHT--T
T ss_pred CCCCHHHhcC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeec------cCCCcccEEEEEeCChHHHHHC--C
Confidence 56678888 5 78898887778889994 44554 3555543333322 2226778888765554443333 6
Q ss_pred EEEeCCccccCcceeecCCCC-cc-hHHHHHHHHhcc
Q 002301 762 FSIVGQVFTKNGWGFAFPRDS-PL-AVDISTAILKLS 796 (940)
Q Consensus 762 l~~~~~~~~~~~~~~~~~k~s-pl-~~~~~~~il~l~ 796 (940)
|..++..+ .+.-.++..|.+ +. .+.++..+.+|.
T Consensus 173 L~~ie~I~-~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 173 LRVIDTIL-ESSVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEEEEEE-EECEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred CEEeEEEE-eeEEEEEEccchhhhHHHHHHHHHHHHH
Confidence 77775444 444455556655 22 245555555554
No 298
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=40.99 E-value=54 Score=33.07 Aligned_cols=80 Identities=6% Similarity=-0.004 Sum_probs=55.5
Q ss_pred CCeEEEEEEEc-------CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHH
Q 002301 163 GWREVIAIYVD-------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGP 235 (940)
Q Consensus 163 ~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~ 235 (940)
+=+.|+++..+ +.|.....+.+.+++++.|..+... ............++.+...+.+.||+...... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN-D 82 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-C
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-h
Confidence 34678888765 5677888999999999999887653 21123344456777788889999998654322 2
Q ss_pred HHHHHHHHcCC
Q 002301 236 VVFHVAQYLGM 246 (940)
Q Consensus 236 ~~l~~a~~~g~ 246 (940)
..++.+.+.|+
T Consensus 83 ~~~~~l~~~~i 93 (292)
T 3k4h_A 83 RIIQYLHEQNF 93 (292)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 56777777774
No 299
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=40.83 E-value=1.2e+02 Score=30.48 Aligned_cols=59 Identities=10% Similarity=0.171 Sum_probs=36.1
Q ss_pred CCCCEEEEEEecCCC------CHHHH----HHHHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 66 LGGTKLKLQMQDCNH------SGFLA----LAEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 66 L~g~~l~~~~~D~~~------~~~~a----~~~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
||+..+-| +.|+.. +.... .+.+..|.+.++.+|+=+-++..+.++..+-+...+|+|.
T Consensus 28 lP~~~~iy-~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 28 LPHEQVYY-LGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp CTTCCEEE-EECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCcEEE-EeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 47666655 345542 22222 2334445556999888765555554567777788999996
No 300
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=40.67 E-value=1.1e+02 Score=31.63 Aligned_cols=78 Identities=6% Similarity=-0.017 Sum_probs=55.9
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 242 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~ 242 (940)
+.|+++..+ +.|.....+.+.+.+++.|..+.....- .+.......++.+...+.|.||+....... ..++.+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTD---YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECT---TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 468888754 6788888999999999999887654221 244455667778888899999987644333 5667777
Q ss_pred HcCC
Q 002301 243 YLGM 246 (940)
Q Consensus 243 ~~g~ 246 (940)
+.|+
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 7664
No 301
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=40.27 E-value=2.4e+02 Score=29.25 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=76.2
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE--cCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII--GPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~s~~a 109 (940)
-.|+.+|--.+. .-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+ ++. ..
T Consensus 45 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~-~~-- 111 (333)
T 1duv_G 45 KNIALIFEKDST---RTRCSFEVAAYDQ-------GARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYG-QE-- 111 (333)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSC-HH--
T ss_pred CEEEEEecCCCc---cHHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCC-ch--
Confidence 468888876653 6788999999986 35555554334333223334444445555344443 432 22
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HH-cC--C--eEEEEEEEcCCcchhhH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DH-YG--W--REVIAIYVDDDHGRNGI 181 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~-~~--w--~~v~ii~~d~~~g~~~~ 181 (940)
.+..+++..+||+|. +.+ +...| .+++++++ ++ +| . .+|+++. |.. .+..
T Consensus 112 -~~~~lA~~~~vPVIN-a~~-----~~~HP------------tQ~LaDl~Ti~e~~~g~~l~gl~ia~vG--D~~-~~va 169 (333)
T 1duv_G 112 -IVETLAEYASVPVWN-GLT-----NEFHP------------TQLLADLLTMQEHLPGKAFNEMTLVYAG--DAR-NNMG 169 (333)
T ss_dssp -HHHHHHHHHSSCEEE-SCC-----SSCCH------------HHHHHHHHHHHHHSTTCCGGGCEEEEES--CTT-SHHH
T ss_pred -HHHHHHHhCCCCeEc-CCC-----CCCCc------------hHHHHHHHHHHHHhcCCCCCCcEEEEEC--CCc-cchH
Confidence 344555666899997 222 22333 35677763 66 66 2 4555543 322 3566
Q ss_pred HHHHHHHhcCceeEEEee
Q 002301 182 AALGDTLAAKRCRISFKA 199 (940)
Q Consensus 182 ~~l~~~l~~~g~~v~~~~ 199 (940)
..+...+...|.+|....
T Consensus 170 ~Sl~~~~~~~G~~v~~~~ 187 (333)
T 1duv_G 170 NSMLEAAALTGLDLRLVA 187 (333)
T ss_dssp HHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 777777878888776653
No 302
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=40.13 E-value=1e+02 Score=31.95 Aligned_cols=84 Identities=7% Similarity=0.012 Sum_probs=55.9
Q ss_pred HHHcCCeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHH
Q 002301 159 VDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPV 236 (940)
Q Consensus 159 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~ 236 (940)
++.-.-+.|+++..+ +.|....++.+.+++++.|..+.....- .+.......++.+...+.|.||+....... .
T Consensus 57 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~ 132 (339)
T 3h5o_A 57 LASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSH---YDAGQELQLLRAYLQHRPDGVLITGLSHAE-P 132 (339)
T ss_dssp ------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHTTCCSEEEEECSCCCT-T
T ss_pred hhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHcCCCCEEEEeCCCCCH-H
Confidence 333445678888854 6688889999999999999887653221 244555677788888899999987644332 4
Q ss_pred HHHHHHHcCC
Q 002301 237 VFHVAQYLGM 246 (940)
Q Consensus 237 ~l~~a~~~g~ 246 (940)
.+..+.+.|.
T Consensus 133 ~~~~l~~~~i 142 (339)
T 3h5o_A 133 FERILSQHAL 142 (339)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhcCCC
Confidence 5666666664
No 303
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=39.99 E-value=74 Score=32.32 Aligned_cols=79 Identities=9% Similarity=0.024 Sum_probs=53.5
Q ss_pred eEEEEEEE--cCCcchhhHHHHHHHHhcCce-eEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCc-HHHHHHH
Q 002301 165 REVIAIYV--DDDHGRNGIAALGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHV 240 (940)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~-~~~~l~~ 240 (940)
+.|+++.. ++.|.......+.+++++.|. .+.....- .+.......++.+...+.+.||+...... ....+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ---NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCC---CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 46788875 356777888999999999996 77654221 23444456677777788999988754333 3466777
Q ss_pred HHHcCC
Q 002301 241 AQYLGM 246 (940)
Q Consensus 241 a~~~g~ 246 (940)
+.+.|+
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 776664
No 304
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=39.79 E-value=81 Score=32.72 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=53.3
Q ss_pred eEEEEEEEc---CCcchhhHHHHHHHHhcCceeEEEeecCCC-CCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHH
Q 002301 165 REVIAIYVD---DDHGRNGIAALGDTLAAKRCRISFKAPLSV-EATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 240 (940)
Q Consensus 165 ~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~ 240 (940)
+.|+++..+ ++|.......+.+++++.|..+........ ..+...-...++.+...+.|.||+..........++.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 468888765 567788889999999999976654321111 0133344566777777889999984333333566777
Q ss_pred HHHcCC
Q 002301 241 AQYLGM 246 (940)
Q Consensus 241 a~~~g~ 246 (940)
+.+.|.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 776663
No 305
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=39.48 E-value=46 Score=35.24 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC--
Q 002301 154 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-- 231 (940)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-- 231 (940)
.+.++++.+|.+++.+|+..... ...+.+.+.|++.++.+ +. .+.+.++.+.+...+..+++.++|+||-.+.+
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 99 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-FS-EAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGST 99 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-ec-CcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcHH
Confidence 36677888999999888855433 35788888888766543 22 23333566778888888888999998877544
Q ss_pred CcHHHHH
Q 002301 232 NRGPVVF 238 (940)
Q Consensus 232 ~~~~~~l 238 (940)
-++.+++
T Consensus 100 iD~aK~i 106 (353)
T 3hl0_A 100 TGLGKAI 106 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 306
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=39.35 E-value=1e+02 Score=30.50 Aligned_cols=93 Identities=6% Similarity=0.023 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEc------------CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC
Q 002301 153 AAIAEIVDHYGWREVIAIYVD------------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT 220 (940)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d------------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~ 220 (940)
...++.++..|.+.|=+...+ ........+.+++.+++.|+++........ ...+++...+...+..
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~l 103 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA-EKSSDWEKMFKFAKAM 103 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC-SSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC-ccHHHHHHHHHHHHHc
Confidence 446667788898888765422 122345688999999999999876654432 3556788888888888
Q ss_pred CCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 221 ESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 221 ~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
+++.|+++........+...|.+.|+
T Consensus 104 Ga~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 104 DLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 99999998766666777777777775
No 307
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=39.34 E-value=16 Score=37.69 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=41.0
Q ss_pred CceeehhhhhhHhhccc--cccccccchh------hhHHHHHhhhhhhhhhccceeeeeee
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGR------LVLIIWLFVVLIINSSYTASLTSILT 676 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R------~l~~~w~~~~lil~~~Yta~L~s~Lt 676 (940)
++..++|+++.++...| .-.|.+..+| ++.++|.++++.+.+.-.+.+.+++.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999998776 3367777776 59999999999888887776555543
No 308
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=38.43 E-value=63 Score=32.78 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=53.1
Q ss_pred eEEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCC-cHHHHHHHH
Q 002301 165 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~-~~~~~l~~a 241 (940)
++|+++.. ++.|.....+.+.+++++.|+++.... +...+.......++++...+.+.||+..... .....++.+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 46777764 456778888999999999998876422 1112344455667777778899988875432 233556777
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76664
No 309
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=38.27 E-value=78 Score=31.78 Aligned_cols=79 Identities=3% Similarity=-0.037 Sum_probs=52.9
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a 241 (940)
+.|+++..+ +.|.....+.+.+++++.|..+.....- .+...-...++.+...+.|.||+.... ......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQ---NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecCC---CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 357777753 5677788899999999999887654321 233334456777777889998886433 3334567777
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 310
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=38.12 E-value=2.3e+02 Score=28.53 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=43.6
Q ss_pred HHHHHHHH---Hh-CCCccCeEEeeCCCCCCCCCHhHHHHHHHc-C-cccEEeeceeeec---CcceeeeeccccccccE
Q 002301 497 IDVFTAAI---NL-LPYAVPYKLIPFGDGHNNPSCTELVRLITA-G-VYDAAVGDIAIIT---NRTKMADFTQPYIESGL 567 (940)
Q Consensus 497 idll~~l~---~~-l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~-g-~~Di~~~~~~~t~---~R~~~v~ft~p~~~~~~ 567 (940)
-++++.+. ++ .|.++++.... ++-..++.+|.+ | .+|+.+..-.... ......+...||....+
T Consensus 20 ~~~~~~F~~~~~~~~gi~V~~~~~~-------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 92 (296)
T 3cg1_A 20 QEVEKEFSEYAERNLGIKVSFQDEA-------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNEI 92 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCE
T ss_pred HHHHHHHHHHHHhCCCceEEEEeec-------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceecccccE
Confidence 35777777 66 68886651022 346778888887 5 5999876321111 11122245567777888
Q ss_pred EEEEeccC
Q 002301 568 VVVAPVRK 575 (940)
Q Consensus 568 ~~vv~~~~ 575 (940)
++++++..
T Consensus 93 vi~~~~~~ 100 (296)
T 3cg1_A 93 VIAFTDKS 100 (296)
T ss_dssp EEEECTTS
T ss_pred EEEEcCCC
Confidence 88887654
No 311
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=38.03 E-value=48 Score=33.45 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=37.2
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
.+++++||.. +|..- -+...++..+.+.+|+++++... ++ .-+...+.+|++|+....
T Consensus 163 ~~~~I~ig~~---~w~e~----------~~~~~v~~~~Le~~Gy~Ve~~~~--------~~-~~~~~al~~G~iD~~~e~ 220 (268)
T 2b4l_A 163 KGDKINLAYV---AWDSE----------IASTNVIGKVLEDLGYEVTLTQV--------EA-GPMWTAIATGSADASLSA 220 (268)
T ss_dssp SSCEEEEEEC---CCHHH----------HHHHHHHHHHHHHHTCEEEEEEC--------CT-THHHHHHHHTSSSEEEEE
T ss_pred cCcceEEEcc---CccHH----------HHHHHHHHHHHHHcCCceEEEEC--------Ch-HHHHHHHHCCCCeEEehh
Confidence 4567888876 33210 11233455566678999776553 22 567889999999998653
No 312
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=37.75 E-value=85 Score=31.09 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec
Q 002301 153 AAIAEIVDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (940)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~ 230 (940)
...++.++..|.+.|=+.... .+.....++.+++.+++.|+.+........ .....+...+...+..+++.|+++..
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p~ 111 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVPN 111 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecCC
Confidence 456777888898888765431 123445678999999999998875443321 34567777787778888999998866
Q ss_pred CCcHHHHHHHHHHcCCC
Q 002301 231 YNRGPVVFHVAQYLGML 247 (940)
Q Consensus 231 ~~~~~~~l~~a~~~g~~ 247 (940)
.+....+...|.+.|+.
T Consensus 112 ~~~l~~l~~~a~~~gv~ 128 (257)
T 3lmz_A 112 YELLPYVDKKVKEYDFH 128 (257)
T ss_dssp GGGHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 66677788888877753
No 313
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=37.70 E-value=65 Score=32.19 Aligned_cols=77 Identities=5% Similarity=-0.045 Sum_probs=53.1
Q ss_pred CeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHH-H
Q 002301 164 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFH-V 240 (940)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~-~ 240 (940)
-+.|+++..+ +.|.....+.+.+++++.|..+.....- .+.......++.+...+.|.||+... ....++ .
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~~dgiIi~~~---~~~~~~~~ 81 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSD---NDIKKAQGYLATFVSHNCTGMISTAF---NENIIENT 81 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECGG---GHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEecC---ChHHHHHH
Confidence 3568888764 5677888999999999999887753222 24455567777888889999999762 234566 7
Q ss_pred HHHcCC
Q 002301 241 AQYLGM 246 (940)
Q Consensus 241 a~~~g~ 246 (940)
+.+.|+
T Consensus 82 l~~~~i 87 (277)
T 3e61_A 82 LTDHHI 87 (277)
T ss_dssp HHHC-C
T ss_pred HHcCCC
Confidence 777664
No 314
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=37.66 E-value=8 Score=39.99 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=45.0
Q ss_pred CceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeee
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSIL 675 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~L 675 (940)
++.+++||++.++..-| .-.|.+..+|++.++|.++++.+.....+++...+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999998776 44799999999999999999999999998877665
No 315
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=37.56 E-value=76 Score=32.44 Aligned_cols=79 Identities=10% Similarity=-0.044 Sum_probs=52.7
Q ss_pred EEEEEEEcCC-cchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHHHH
Q 002301 166 EVIAIYVDDD-HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVAQY 243 (940)
Q Consensus 166 ~v~ii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a~~ 243 (940)
+|+++..+.. |.....+.+.+++++.|.++.....- ..+.......++.+...+.+.||+.... ......++.+.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQ--KEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEECCS--SSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777764322 77788889999999999887654211 1234445566777777889999887543 334466777777
Q ss_pred cCC
Q 002301 244 LGM 246 (940)
Q Consensus 244 ~g~ 246 (940)
.|+
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 664
No 316
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=37.52 E-value=3.6e+02 Score=27.70 Aligned_cols=132 Identities=18% Similarity=0.241 Sum_probs=80.4
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE--cCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII--GPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~s~~a 109 (940)
-.++.+|-..+ ..-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+ .+ . .
T Consensus 47 k~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~---~ 112 (315)
T 1pvv_A 47 KTLAMIFQKPS---TRTRVSFEVAMAHL-------GGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVY-D---H 112 (315)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECS-S---H
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecC-c---h
Confidence 46788887654 36788999999986 46666666555544333444444555565344444 33 2 2
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCcchhhHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 183 (940)
..+..+++..++|+|. +.++ ...| .+++++++ +++| -.+|+++. | . .+.+..
T Consensus 113 ~~~~~lA~~~~vPVIN-a~~~-----~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vG-D-~--~rva~S 170 (315)
T 1pvv_A 113 KDVEDLAKYATVPVIN-GLSD-----FSHP------------CQALADYMTIWEKKGTIKGVKVVYVG-D-G--NNVAHS 170 (315)
T ss_dssp HHHHHHHHHCSSCEEE-EECS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES-C-C--CHHHHH
T ss_pred HHHHHHHHhCCCCEEc-CCCC-----CCCc------------HHHHHHHHHHHHHhCCcCCcEEEEEC-C-C--cchHHH
Confidence 3345566777899997 3322 2223 35677763 5555 35666654 2 2 456777
Q ss_pred HHHHHhcCceeEEEee
Q 002301 184 LGDTLAAKRCRISFKA 199 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~ 199 (940)
+...+...|.++....
T Consensus 171 l~~~~~~~g~~v~~~~ 186 (315)
T 1pvv_A 171 LMIAGTKLGADVVVAT 186 (315)
T ss_dssp HHHHHHHTTCEEEEEC
T ss_pred HHHHHHHCCCEEEEEC
Confidence 8888888898877654
No 317
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.22 E-value=1.5e+02 Score=23.62 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=55.5
Q ss_pred CCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHH
Q 002301 138 FPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV 217 (940)
Q Consensus 138 ~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l 217 (940)
.-|-.|+.-+.+..-..+-++++.|+-+-|.++..|.+|.... -.|.+.+..+-.-|.| . .+...+...-.++
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkewaeka-irfvkslgaqvliiiy----d--qdqnrleefsrev 97 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKA-IRFVKSLGAQVLIIIY----D--QDQNRLEEFSREV 97 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHH-HHHHHHHCCCCEEEEE----C--SCHHHHHHHHHHH
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHH-HHHHHhcCCeEEEEEE----e--CchhHHHHHHHHH
Confidence 4567899999999999999999999998888777666554433 3455555444333333 2 3444444445555
Q ss_pred hcCCCeEEEEEecCCcHHH
Q 002301 218 ALTESRIIVVHTHYNRGPV 236 (940)
Q Consensus 218 ~~~~~~viv~~~~~~~~~~ 236 (940)
+..+-.+--+ .++++...
T Consensus 98 rrrgfevrtv-tspddfkk 115 (134)
T 2l69_A 98 RRRGFEVRTV-TSPDDFKK 115 (134)
T ss_dssp HHTTCCEEEE-SSHHHHHH
T ss_pred HhcCceEEEe-cChHHHHH
Confidence 5555444333 33444443
No 318
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=37.00 E-value=1.1e+02 Score=28.53 Aligned_cols=67 Identities=9% Similarity=-0.017 Sum_probs=48.5
Q ss_pred cCCeEEEEEEEcCC----------cchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC-CCeEEEEEec
Q 002301 162 YGWREVIAIYVDDD----------HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTH 230 (940)
Q Consensus 162 ~~w~~v~ii~~d~~----------~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viv~~~~ 230 (940)
+.--+|++|...|+ .-......+.+.+++.|.++.....++ .+.+.+...+.+..+. ++|+||..+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 45567888876542 123445678888999999998877777 6677888888876654 5899998854
No 319
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=37.00 E-value=3.1e+02 Score=27.47 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=36.5
Q ss_pred CCCCEEEEEEecCC------CCHHHHHHHH----HHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 66 LGGTKLKLQMQDCN------HSGFLALAEA----LHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 66 L~g~~l~~~~~D~~------~~~~~a~~~a----~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
||+..+.+ +.|+. .+.....+.+ ..|.+.++.+|+=+-++..+.++..+-+..++|+|.
T Consensus 47 lP~e~~iy-~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 47 RLFDEIIY-YGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp TCCSEEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred CCCCCEEE-EecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 47777765 44642 2444443333 334344899888765555555566777788999995
No 320
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=36.98 E-value=2.6e+02 Score=27.94 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=68.2
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-----CcEEEEcCCCc
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-----QTVAIIGPQDA 106 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-----~v~aiiGp~~s 106 (940)
+||.+.... .........|+..|+++- |.++... ....+...+.+.+.+++.. .+.||+.. +.
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~-~d 201 (295)
T 3hcw_A 133 ELIFITEKGNFEVSKDRIQGFETVASQF--------NLDYQII--ETSNEREVILNYMQNLHTRLKDPNIKQAIISL-DA 201 (295)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHT--------TCEEEEE--EECSCHHHHHHHHHHHHHHHTCTTSCEEEEES-SH
T ss_pred cEEEEcCCccchhHHHHHHHHHHHHHHc--------CCCeeEE--eccCCHHHHHHHHHHHHhhcccCCCCcEEEEC-Ch
Confidence 577776543 333445578888888773 3444432 3345666777777777764 68899973 44
Q ss_pred hhHHHHHHhhccCC--cc----EEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH
Q 002301 107 VTSHVVSHVANELQ--VP----LLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 107 ~~a~~va~~~~~~~--vP----~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l 159 (940)
..+..+...+.+.+ || +|+|.... +.....|-+-.+..+...+++..++++
T Consensus 202 ~~A~g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l 258 (295)
T 3hcw_A 202 MLHLAILSVLYELNIEIPKDVMTATFNDSY--LTEIASPPQTCIDIKPRMLGQQAGSAI 258 (295)
T ss_dssp HHHHHHHHHHHHTTCCTTTTEEEEEECCSH--HHHTSSSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCChh--HHhhCCCCeeEEEECHHHHHHHHHHHH
Confidence 44555555555544 34 67664432 222233556666677777888877765
No 321
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=36.81 E-value=2.5e+02 Score=28.95 Aligned_cols=133 Identities=18% Similarity=0.238 Sum_probs=76.7
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE--cCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII--GPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~s~~a 109 (940)
-.|+.+|-..+ ..-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+ ++ ...
T Consensus 59 k~la~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~-~~~-- 125 (325)
T 1vlv_A 59 MTLAMIFEKRS---TRTRLAFETAFAEE-------GGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGY-KQE-- 125 (325)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESS-CHH--
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECC-ChH--
Confidence 46888887664 36789999999986 45555554434333222334444444555334443 43 223
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCcchhhHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 183 (940)
.+..+++..++|+|. +.+ +...| .+++++++ +++| -.+|+++. | .. .+.+..
T Consensus 126 -~~~~lA~~~~vPVIN--a~~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vG-D-~~-~rva~S 183 (325)
T 1vlv_A 126 -TVEKLAEYSGVPVYN--GLT----DEFHP------------TQALADLMTIEENFGRLKGVKVVFMG-D-TR-NNVATS 183 (325)
T ss_dssp -HHHHHHHHHCSCEEE--SCC----SSCCH------------HHHHHHHHHHHHHHSCSTTCEEEEES-C-TT-SHHHHH
T ss_pred -HHHHHHHhCCCCEEe--CCC----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEEC-C-CC-cCcHHH
Confidence 344455666899997 322 22233 35677763 5555 25666654 3 22 356777
Q ss_pred HHHHHhcCceeEEEee
Q 002301 184 LGDTLAAKRCRISFKA 199 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~ 199 (940)
+...+...|.+|....
T Consensus 184 l~~~~~~~G~~v~~~~ 199 (325)
T 1vlv_A 184 LMIACAKMGMNFVACG 199 (325)
T ss_dssp HHHHHHHTTCEEEEES
T ss_pred HHHHHHHCCCEEEEEC
Confidence 8888888898877653
No 322
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=35.55 E-value=96 Score=30.84 Aligned_cols=79 Identities=3% Similarity=-0.018 Sum_probs=53.0
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a 241 (940)
+.|+++..+ +.|.......+.+++++.|..+..... . .+...-...+..+...+.|.||+.... ......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-Q--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 467777754 567778889999999999988765422 1 233334556777777889999886433 2333567777
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|.
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 323
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=35.53 E-value=3.7e+02 Score=27.49 Aligned_cols=116 Identities=13% Similarity=0.010 Sum_probs=70.9
Q ss_pred EEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcC-cEEEEcCCCchhH
Q 002301 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQ-TVAIIGPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~~s~~a 109 (940)
=+||++.... .........|+..|+++. |.+ ........+...+.+.+.+++... +.||+... ...+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~n-d~~A 243 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIY--------GAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVAS-PRLM 243 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECC-HHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHC--------CCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECC-HHHH
Confidence 3678776553 333445578888888774 233 222214567778888888888764 78998744 4444
Q ss_pred HHHHHhhccCC------ccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHH
Q 002301 110 HVVSHVANELQ------VPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD 160 (940)
Q Consensus 110 ~~va~~~~~~~------vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~ 160 (940)
..+...+.+.+ |.+|+|.... +.....|-+-.+..+...+++..++++.
T Consensus 244 ~g~~~al~~~G~~vP~disvig~D~~~--~~~~~~p~lttv~~~~~~~g~~Av~~L~ 298 (333)
T 3jvd_A 244 AGVMRAFTRLNVRVPHDVVIGGYDDPE--WYSFVGAGITTFVPPHEEMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCCG--GGGGSTTSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEECChH--HHHhcCCCceEEecCHHHHHHHHHHHHH
Confidence 44555555443 3377765433 3333346666677777788888887753
No 324
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=35.38 E-value=1.3e+02 Score=30.88 Aligned_cols=134 Identities=13% Similarity=0.156 Sum_probs=76.1
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEE--cCCCchh
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAII--GPQDAVT 108 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aii--Gp~~s~~ 108 (940)
-.|+.+|-..+. .-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++. ++++|+ .+. ...
T Consensus 37 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~-~~~ 105 (304)
T 3r7f_A 37 KFAANLFFEPST---RTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSE-DEY 105 (304)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSS-TTC
T ss_pred CEEEEEecCCCh---hHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCC-hhH
Confidence 458888877653 5688999999986 45666664444433222333333334444 455554 333 233
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCcchhhHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~ 182 (940)
. ..+++..+||+|.-+.++ ...| .+++++++ +++| ..+|+++. |..++ +.+.
T Consensus 106 ~---~~la~~~~vPVINagdg~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG-D~~~~-rva~ 163 (304)
T 3r7f_A 106 Y---EELVSQVNIPILNAGDGC-----GQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG-DIKHS-RVAR 163 (304)
T ss_dssp H---HHHHHHCSSCEEESCCTT-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES-CCTTC-HHHH
T ss_pred H---HHHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc-CCCCc-chHH
Confidence 3 344566789999732112 2223 35567663 5554 46776664 32222 4566
Q ss_pred HHHHHHhcCceeEEEe
Q 002301 183 ALGDTLAAKRCRISFK 198 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~ 198 (940)
.+...+...|.++...
T Consensus 164 Sl~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 164 SNAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 6777778888877654
No 325
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=35.21 E-value=1.3e+02 Score=30.61 Aligned_cols=35 Identities=6% Similarity=0.155 Sum_probs=24.7
Q ss_pred HHHh-cCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 91 HLME-GQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 91 ~li~-~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
.+++ .++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 78 ~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 78 AVQERYPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp HHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred HHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 3445 4888888755555545667777788999996
No 326
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.12 E-value=51 Score=33.32 Aligned_cols=80 Identities=5% Similarity=-0.125 Sum_probs=55.2
Q ss_pred CCeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHH
Q 002301 163 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 240 (940)
Q Consensus 163 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~ 240 (940)
+-+.|+++..+ +.|.......+.+++++.|..+.....- .+.......++.+...+.|.||+..... ....++.
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTA---EDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 34678888854 4567788899999999999887754322 2445556677788888999999876543 3455655
Q ss_pred HHHcCC
Q 002301 241 AQYLGM 246 (940)
Q Consensus 241 a~~~g~ 246 (940)
+.+.|+
T Consensus 83 ~~~~~i 88 (291)
T 3egc_A 83 ELPKTF 88 (291)
T ss_dssp SSCTTS
T ss_pred hhccCC
Confidence 555453
No 327
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=34.95 E-value=3.6e+02 Score=27.55 Aligned_cols=133 Identities=11% Similarity=0.149 Sum_probs=76.6
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE--cCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII--GPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~s~~a 109 (940)
-.|+.+|-..+ ..-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+ ++ ..
T Consensus 40 k~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~~--- 105 (307)
T 2i6u_A 40 RGVAVIFDKNS---TRTRFSFELGIAQL-------GGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTF-GQ--- 105 (307)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECS-SH---
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecC-Ch---
Confidence 46888887654 35688999999996 45566665444432222223333333333234443 33 22
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCcchhhHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 183 (940)
..+..+++..++|+|. +. + +...| .+++++++ +++| -.+|+++. |. . .+....
T Consensus 106 ~~~~~lA~~~~vPVIN-a~-~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vG-D~-~-~rva~S 164 (307)
T 2i6u_A 106 ERLDAMASVATVPVIN-AL-S----DEFHP------------CQVLADLQTIAERKGALRGLRLSYFG-DG-A-NNMAHS 164 (307)
T ss_dssp HHHHHHHHHCSSCEEE-SC-C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES-CT-T-SHHHHH
T ss_pred hHHHHHHhhCCCCEEc-CC-C----CCcCc------------cHHHHHHHHHHHHhCCcCCeEEEEEC-CC-C-cCcHHH
Confidence 3345566677899997 22 2 22333 35677763 5565 24666654 32 2 366777
Q ss_pred HHHHHhcCceeEEEee
Q 002301 184 LGDTLAAKRCRISFKA 199 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~ 199 (940)
+...+...|.++....
T Consensus 165 l~~~~~~~g~~v~~~~ 180 (307)
T 2i6u_A 165 LLLGGVTAGIHVTVAA 180 (307)
T ss_dssp HHHHHHHTTCEEEEEC
T ss_pred HHHHHHHCCCEEEEEC
Confidence 8888888898877654
No 328
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=34.93 E-value=1.8e+02 Score=25.65 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=53.6
Q ss_pred EEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCc----HHHHHHHH
Q 002301 166 EVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR----GPVVFHVA 241 (940)
Q Consensus 166 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~----~~~~l~~a 241 (940)
+|.+.....+.-.-+..-+...|+..|.+|.+-.... .. ...+..+++.++++|.+++.... ...++++.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~---p~---e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS---PQ---ELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE---CH---HHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC---CH---HHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 4555555555555566777788899999998654432 22 35556666678999999876543 44566777
Q ss_pred HHcCCCCCCeEEEec
Q 002301 242 QYLGMLGTGYVWIAT 256 (940)
Q Consensus 242 ~~~g~~~~~~~wi~~ 256 (940)
++.|.. .-.+|++.
T Consensus 79 ~~~g~~-~i~v~vGG 92 (137)
T 1ccw_A 79 DEAGLE-GILLYVGG 92 (137)
T ss_dssp HHTTCT-TCEEEEEE
T ss_pred HhcCCC-CCEEEEEC
Confidence 777753 23455554
No 329
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=34.73 E-value=1.5e+02 Score=27.33 Aligned_cols=68 Identities=6% Similarity=0.040 Sum_probs=49.6
Q ss_pred cCCeEEEEEEEcCCcch---hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc-CCCeEEEEEecC
Q 002301 162 YGWREVIAIYVDDDHGR---NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHY 231 (940)
Q Consensus 162 ~~w~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viv~~~~~ 231 (940)
|.--++++|...|+-|+ .....+.+.+++.|+++.....++ .+.+.+...+++..+ .++|+||..+..
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVK--DDKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEEC--SSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 44568888887665543 235677888888999988877777 677788888888765 378999988543
No 330
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=34.73 E-value=1.1e+02 Score=30.36 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=66.6
Q ss_pred HHHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeE
Q 002301 87 AEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWRE 166 (940)
Q Consensus 87 ~~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~ 166 (940)
+.+..|.+.++.+|+-+-++..+..+..+-+..++|+|... -.++...++..+-++
T Consensus 53 ~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~------------------------e~~~~~A~~~~~~~r 108 (254)
T 1b73_A 53 ECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVI------------------------EPGVKEALKKSRNKK 108 (254)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH------------------------HHHHHHHHHHCSSCE
T ss_pred HHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee------------------------HHHHHHHHHccCCCE
Confidence 34444555689988875555543346666677789998620 011222233456789
Q ss_pred EEEEEEcCCcchhhHHHHHHHHhcCceeEEEeec--CCCC--C---C----hhHHHHHHHHHhcCCCeEEEEEecC-CcH
Q 002301 167 VIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAP--LSVE--A---T----EDEITDLLVKVALTESRIIVVHTHY-NRG 234 (940)
Q Consensus 167 v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~--~~~~--~---~----~~~~~~~l~~l~~~~~~viv~~~~~-~~~ 234 (940)
|+++......-. ..+++.+++.|+++..... +-.. . + ...+...++++.+. +|+||+.|.. ...
T Consensus 109 igVlaT~~T~~~---~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~p~l 184 (254)
T 1b73_A 109 IGVIGTPATVKS---GAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHYPLL 184 (254)
T ss_dssp EEEEECHHHHHH---CHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCTTCC
T ss_pred EEEEEChHHhhh---HHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccChHHH
Confidence 999986543211 2244555677877652211 1111 1 1 12334444444445 9999998765 444
Q ss_pred HHHHH
Q 002301 235 PVVFH 239 (940)
Q Consensus 235 ~~~l~ 239 (940)
...++
T Consensus 185 ~~~i~ 189 (254)
T 1b73_A 185 KKEIK 189 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 331
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=34.68 E-value=86 Score=29.52 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=47.4
Q ss_pred CCeEEEEEEEcCCc----chhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec
Q 002301 163 GWREVIAIYVDDDH----GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (940)
Q Consensus 163 ~w~~v~ii~~d~~~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~ 230 (940)
.--+|++|...|+- -......+.+.+++.|.++.....++ .+.+.+...+++....+.|+||..+.
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVE--ADEVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEEC--SCHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 34567777754331 23345678888899999998887787 66778888888765467899998854
No 332
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=34.43 E-value=1e+02 Score=28.21 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=45.6
Q ss_pred EEEEEEEcCC--cc---hhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC-CCeEEEEEec
Q 002301 166 EVIAIYVDDD--HG---RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTH 230 (940)
Q Consensus 166 ~v~ii~~d~~--~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viv~~~~ 230 (940)
+|++|...|+ .| ......+.+.+++.|+++.....++ .+.+.+...+++..+. +.|+||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVP--DEPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 5667765443 11 2335678888999999998877777 6777888888887654 6899998854
No 333
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=34.30 E-value=2.6e+02 Score=28.83 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=75.3
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a 109 (940)
-.++.+|-..+ ..-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++. .+.++=.+ ...
T Consensus 47 k~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~~~-- 113 (321)
T 1oth_A 47 KSLGMIFEKRS---TRTRLSTETGFALL-------GGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVY-KQS-- 113 (321)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECS-CHH--
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCC-Chh--
Confidence 46788887654 35688999999986 45566555444432222222222333333 33333333 222
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCcchhhHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 183 (940)
.+..+++..++|+|.- .+ +...| .+++++++ +++| -.+|+++. | +.+.+..
T Consensus 114 -~~~~lA~~~~vPVINa-~~-----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vG-D---~~~va~S 170 (321)
T 1oth_A 114 -DLDTLAKEASIPIING-LS-----DLYHP------------IQILADYLTLQEHYSSLKGLTLSWIG-D---GNNILHS 170 (321)
T ss_dssp -HHHHHHHHCSSCEEES-CC-----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES-C---SSHHHHH
T ss_pred -HHHHHHHhCCCCEEcC-CC-----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEEC-C---chhhHHH
Confidence 3445666778999972 22 22333 35677763 5565 34666654 2 2356777
Q ss_pred HHHHHhcCceeEEEee
Q 002301 184 LGDTLAAKRCRISFKA 199 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~ 199 (940)
+...+...|.+|....
T Consensus 171 l~~~~~~~G~~v~~~~ 186 (321)
T 1oth_A 171 IMMSAAKFGMHLQAAT 186 (321)
T ss_dssp HHTTTGGGTCEEEEEC
T ss_pred HHHHHHHcCCeEEEEC
Confidence 7788888898877654
No 334
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=33.79 E-value=3.6e+02 Score=26.60 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=65.8
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTS 109 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a 109 (940)
+||++.... .........|+..|+++.. ..+.- ......+...+...+.+++.. .+.||+.... ..+
T Consensus 133 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g--------~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a 202 (289)
T 3brs_A 133 KIGVISFVKNSKTAMDREEGLKIGLSDDS--------NKIEA-IYYCDSNYDKAYDGTVELLTKYPDISVMVGLNQ-YSA 202 (289)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHGGGG--------GGEEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEESSH-HHH
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCC--------CcEEe-eecCCCCHHHHHHHHHHHHHhCCCceEEEECCC-cch
Confidence 577776542 3334455678888887631 11211 123344677777778888765 5899998543 344
Q ss_pred HHHHHhhccCC----ccEEeeecCCCCCCCCCCCce-EEecCChHHHHHHHHHHH
Q 002301 110 HVVSHVANELQ----VPLLSFSATDPTLSSLQFPYF-VRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 110 ~~va~~~~~~~----vP~Is~~at~~~ls~~~~p~~-~r~~psd~~~~~ai~~~l 159 (940)
..+...+.+.+ +.++++........-..-|.+ ..+..+...++...++++
T Consensus 203 ~g~~~al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l 257 (289)
T 3brs_A 203 TGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKA 257 (289)
T ss_dssp HHHHHHHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHH
Confidence 44445555443 778888665432111111344 555566667777766654
No 335
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=33.71 E-value=58 Score=34.50 Aligned_cols=96 Identities=11% Similarity=0.121 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-
Q 002301 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (940)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~- 231 (940)
..+.++++.+|.+++.+|+..... ...+.+.+.|++.++.+ +. ...+.++.+.+...++.+++.++|+||-.+.+
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 100 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-YA-GAVMHVPIESARDATARAREAGADCAVAVGGGS 100 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-ec-CCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcH
Confidence 346677889999999988865443 34778888888775432 22 23333466778888888888899998877554
Q ss_pred -CcHHHHHHHHHHcCCCCCCeEEEecC
Q 002301 232 -NRGPVVFHVAQYLGMLGTGYVWIATS 257 (940)
Q Consensus 232 -~~~~~~l~~a~~~g~~~~~~~wi~~~ 257 (940)
-++.+++.. ..+ ..++-|-|.
T Consensus 101 viD~aK~iA~--~~~---~p~i~IPTT 122 (358)
T 3jzd_A 101 TTGLGKAIAL--ETG---MPIVAIPTT 122 (358)
T ss_dssp HHHHHHHHHH--HHC---CCEEEEECS
T ss_pred HHHHHHHHHh--ccC---CCEEEEeCC
Confidence 344444433 223 345555554
No 336
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=33.47 E-value=87 Score=31.52 Aligned_cols=80 Identities=4% Similarity=0.047 Sum_probs=52.6
Q ss_pred CCeEEEEEEEc--C--CcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHH
Q 002301 163 GWREVIAIYVD--D--DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVF 238 (940)
Q Consensus 163 ~w~~v~ii~~d--~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l 238 (940)
+=+.|+++..+ + .|.......+.+++++.|..+.....-. ........+..+...+.|.||+..... ....+
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~ 82 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH---AKDSMVPIRYILETGSADGVIISKIEP-NDPRV 82 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS---GGGTTHHHHHHHHHTCCSEEEEESCCT-TCHHH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc---chhHHHHHHHHHHcCCccEEEEecCCC-CcHHH
Confidence 44678888864 3 6788889999999999998877543221 222223444445667899998875332 22566
Q ss_pred HHHHHcCC
Q 002301 239 HVAQYLGM 246 (940)
Q Consensus 239 ~~a~~~g~ 246 (940)
+.+.+.|+
T Consensus 83 ~~l~~~~i 90 (288)
T 3gv0_A 83 RFMTERNM 90 (288)
T ss_dssp HHHHHTTC
T ss_pred HHHhhCCC
Confidence 77777664
No 337
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=33.25 E-value=87 Score=31.13 Aligned_cols=78 Identities=6% Similarity=0.047 Sum_probs=52.6
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 242 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~ 242 (940)
+.|+++..+ +.|.......+.+++++.|..+..... ..+.......+..+...+.|.||+...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS---DYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC---TTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 467888753 557778889999999999987654321 123444556677777788998888754332 35666676
Q ss_pred HcCC
Q 002301 243 YLGM 246 (940)
Q Consensus 243 ~~g~ 246 (940)
+.|.
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 6664
No 338
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.96 E-value=2e+02 Score=26.16 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=55.8
Q ss_pred CeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCC----cHHHHHH
Q 002301 164 WREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN----RGPVVFH 239 (940)
Q Consensus 164 w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~----~~~~~l~ 239 (940)
-.+|.+.....+.-.-+..-+...|+..|.+|.+-.... . ...++..+++.++++|.+++... ....+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~---p---~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ---T---PEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA 91 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC---C---HHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC---C---HHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHH
Confidence 345666555555555667777788999999987543221 2 34566677778999999987643 4556677
Q ss_pred HHHHcCCCCCCeEEEec
Q 002301 240 VAQYLGMLGTGYVWIAT 256 (940)
Q Consensus 240 ~a~~~g~~~~~~~wi~~ 256 (940)
++++.|.. .-.+|++.
T Consensus 92 ~L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 92 KLRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHHTTCT-TSCEEEEE
T ss_pred HHHhcCCC-CCEEEEeC
Confidence 77776652 23456654
No 339
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=32.88 E-value=1.5e+02 Score=29.80 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=28.0
Q ss_pred HHHHHHHHh-cCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 86 LAEALHLME-GQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 86 ~~~a~~li~-~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
.+.+..|.+ .++.+|+=+-++..+.++..+-+..++|+|.
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVig 95 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVG 95 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEc
Confidence 345556667 7899888755555545666777778999996
No 340
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=32.65 E-value=1.3e+02 Score=31.39 Aligned_cols=84 Identities=10% Similarity=0.016 Sum_probs=55.3
Q ss_pred HHHcCCeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHH
Q 002301 159 VDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPV 236 (940)
Q Consensus 159 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~ 236 (940)
++.-.-+.|+++..+ +.|....+..+.+.+++.|..+.....- .+...-...+..+...+.|.||+...... ..
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 140 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTA---YSPEREEQLVETMLRRRPEAMVLSYDGHT-EQ 140 (355)
T ss_dssp ------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEEECSCCC-HH
T ss_pred hhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HH
Confidence 333445678888854 5577788999999999999887654221 23444556777777789999998755433 35
Q ss_pred HHHHHHHcCC
Q 002301 237 VFHVAQYLGM 246 (940)
Q Consensus 237 ~l~~a~~~g~ 246 (940)
.++.+.+.|+
T Consensus 141 ~~~~l~~~~i 150 (355)
T 3e3m_A 141 TIRLLQRASI 150 (355)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 6677777664
No 341
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=32.45 E-value=79 Score=31.86 Aligned_cols=79 Identities=6% Similarity=-0.116 Sum_probs=52.6
Q ss_pred CeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHH---HHHHHhcCCCeEEEEEecCCcHHHHH
Q 002301 164 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITD---LLVKVALTESRIIVVHTHYNRGPVVF 238 (940)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~---~l~~l~~~~~~viv~~~~~~~~~~~l 238 (940)
-+.|+++..+ +.|.......+.+++++.|..+..... . .+...... .++.+...+.|.||+...... ...+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 83 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-C--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDL 83 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-C--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHH
Confidence 3578888753 557778889999999999988765321 1 12233344 677777788999998754433 3456
Q ss_pred HHHHHcCC
Q 002301 239 HVAQYLGM 246 (940)
Q Consensus 239 ~~a~~~g~ 246 (940)
+.+.+.|+
T Consensus 84 ~~l~~~~i 91 (290)
T 2rgy_A 84 DELHRMHP 91 (290)
T ss_dssp HHHHHHCS
T ss_pred HHHhhcCC
Confidence 66666664
No 342
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=31.94 E-value=51 Score=36.22 Aligned_cols=95 Identities=9% Similarity=0.028 Sum_probs=61.1
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC--C
Q 002301 155 IAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--N 232 (940)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~--~ 232 (940)
+.++++.+|.+++.+|+...... ...+.+.+.|++.|+++.+. .+......+++......+++ ++|+||-.+.+ -
T Consensus 82 l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~~-~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSvi 158 (450)
T 1ta9_A 82 SYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTKL-VFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKTM 158 (450)
T ss_dssp HHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEEE-EECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHHH
T ss_pred HHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEEE-eeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHHH
Confidence 55677778866898888654333 46788889998889887432 34433455677777777777 89999876543 4
Q ss_pred cHHHHHHHHHHcCCCCCCeEEEecC
Q 002301 233 RGPVVFHVAQYLGMLGTGYVWIATS 257 (940)
Q Consensus 233 ~~~~~l~~a~~~g~~~~~~~wi~~~ 257 (940)
++.+++.. ..| ..++-|-|.
T Consensus 159 D~AK~iA~--~~g---iP~I~IPTT 178 (450)
T 1ta9_A 159 DSAKYIAH--SMN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHH--HTT---CCEEEEESS
T ss_pred HHHHHHHH--hcC---CCEEEEeCC
Confidence 55555542 123 345556554
No 343
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=31.81 E-value=1.3e+02 Score=30.50 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 88 EALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 88 ~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
.+..|.+.++.+|+=+-++..+..+..+-+..++|+|.
T Consensus 76 ~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 76 IARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIG 113 (286)
T ss_dssp HHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEe
Confidence 34444445899888755555544566676778999996
No 344
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=31.64 E-value=33 Score=35.91 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=49.3
Q ss_pred cCCceeehhhhhhHhhccccc--ccc--ccchhhhHHHHHhhhhhhhhhccceeeeeeeecccc
Q 002301 622 KRQVVTIFWFSFSTMFFAHKE--KTV--SALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLS 681 (940)
Q Consensus 622 ~~~~~~~~~~~~~~l~~~~~~--~~~--s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 681 (940)
..++..++||++.++...|.. .|. +..+|++..+-.++++++.+.-++-+.+-++-+.-.
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 346889999999999977644 564 677999999999999999999999888888766543
No 345
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=31.24 E-value=3e+02 Score=24.95 Aligned_cols=23 Identities=4% Similarity=0.183 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHhcCC--CeEEEEEe
Q 002301 207 EDEITDLLVKVALTE--SRIIVVHT 229 (940)
Q Consensus 207 ~~~~~~~l~~l~~~~--~~viv~~~ 229 (940)
...+..+|..++..+ .++||+.-
T Consensus 59 Rp~l~~ll~~~~~g~~~~d~lvv~~ 83 (167)
T 3guv_A 59 RIQFNRMMEDIKSGKDGVSFVLVFK 83 (167)
T ss_dssp CHHHHHHHHHHHTCTTCCSEEEESC
T ss_pred CHHHHHHHHHHHcCCCCccEEEEEe
Confidence 456666777766554 56666653
No 346
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=31.18 E-value=95 Score=31.57 Aligned_cols=79 Identities=6% Similarity=-0.041 Sum_probs=52.9
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCc-HHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~-~~~~l~~a 241 (940)
.+|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+...... ....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG-Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 467887753 456777788899999999988765432 1 23344456677777778999988754433 34567777
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 347
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=30.88 E-value=4.4e+02 Score=26.81 Aligned_cols=144 Identities=8% Similarity=-0.041 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCcEEE--EcCCCch-hHHHHHHhhccC-CccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHH
Q 002301 81 SGFLALAEALHLMEGQTVAI--IGPQDAV-TSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIA 156 (940)
Q Consensus 81 ~~~~a~~~a~~li~~~v~ai--iGp~~s~-~a~~va~~~~~~-~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~ 156 (940)
.+..+...+.++++.++.++ +-+..+. ....+...+++. ++.+|.+.+ +.+-... ....-..|.
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc--~Gii~p~-~~~~~~~~~--------- 147 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNC--PGVINPG-ECKIGIMPG--------- 147 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSS--CEEEETT-TEEEESSCG---------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCC--CeEeccc-ccceeeccc---------
Confidence 55666677778888766653 3444332 234677888998 999986543 2221100 111111221
Q ss_pred HHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCC-ChhHHHHHHHHHh-cCCCeEEEEEecC---
Q 002301 157 EIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEA-TEDEITDLLVKVA-LTESRIIVVHTHY--- 231 (940)
Q Consensus 157 ~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~l~~l~-~~~~~viv~~~~~--- 231 (940)
..+.--+|++|..... ....+.+.+.+.|+-++....+-... ...++.+.|+.+. +.++++|+++...
T Consensus 148 ---~~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~ 220 (305)
T 2fp4_A 148 ---HIHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGN 220 (305)
T ss_dssp ---GGCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSS
T ss_pred ---cCCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCc
Confidence 1234567999986654 33445566777777776665554322 1456777777765 4689999999886
Q ss_pred --CcHHHHHHHHHH
Q 002301 232 --NRGPVVFHVAQY 243 (940)
Q Consensus 232 --~~~~~~l~~a~~ 243 (940)
.++++|++++.+
T Consensus 221 ~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 221 AEENAAEFLKQHNS 234 (305)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred hhhHHHHHHHHHHH
Confidence 248889987754
No 348
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=30.49 E-value=31 Score=35.38 Aligned_cols=73 Identities=11% Similarity=0.189 Sum_probs=48.2
Q ss_pred eeeHHHHHHHHHh---C---CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeecCcc--eeeee-cc-ccc
Q 002301 494 GFCIDVFTAAINL---L---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT--KMADF-TQ-PYI 563 (940)
Q Consensus 494 G~~idll~~l~~~---l---~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~--~~v~f-t~-p~~ 563 (940)
.+..+++..+.++ . +.+ +++.. ++...++.+|.+|++|+++..-....+.. +.+.+ .. |+.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~--v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFK--VAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CE--EEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCCeE--EEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4566788888888 6 555 54544 56899999999999999876322111100 11122 24 888
Q ss_pred cccEEEEEeccC
Q 002301 564 ESGLVVVAPVRK 575 (940)
Q Consensus 564 ~~~~~~vv~~~~ 575 (940)
...+++++|+..
T Consensus 104 ~d~lvlv~~~~h 115 (294)
T 3cvg_A 104 RDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEECTTC
T ss_pred eccEEEEecCCC
Confidence 899999998765
No 349
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.94 E-value=92 Score=31.13 Aligned_cols=68 Identities=6% Similarity=0.038 Sum_probs=48.3
Q ss_pred HHHcCCeEEEEEEEc--CCcchhhHHHHHHHHhcCcee-EEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe
Q 002301 159 VDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCR-ISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT 229 (940)
Q Consensus 159 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~ 229 (940)
++.-+-+.|+++..+ +.|.....+.+.+++++.|.. +..... . .+...-...++.+...+.|.||+..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFST-N--SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECS-S--CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeC-C--CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 444456788998865 567788899999999999998 654321 1 2444556677788888999999887
No 350
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=29.90 E-value=5.6e+02 Score=28.06 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=53.3
Q ss_pred CeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCC-----ChhHHHHHHHHHhc-CCCeEEEEEecCC-c--H
Q 002301 164 WREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEA-----TEDEITDLLVKVAL-TESRIIVVHTHYN-R--G 234 (940)
Q Consensus 164 w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~~~~l~~l~~-~~~~viv~~~~~~-~--~ 234 (940)
-.+|++|..... ....+.+.+.++|+-++....+-... ...++.+.|..+.+ .++++|+++..+. + .
T Consensus 112 ~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~ 187 (480)
T 3dmy_A 112 EGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVR 187 (480)
T ss_dssp EEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHH
T ss_pred CCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHH
Confidence 457999886654 34455667777887777666554321 45678888888764 6899999998642 2 3
Q ss_pred HHHHHHHHHcC
Q 002301 235 PVVFHVAQYLG 245 (940)
Q Consensus 235 ~~~l~~a~~~g 245 (940)
++|+++|++.+
T Consensus 188 ~~f~~~ar~~~ 198 (480)
T 3dmy_A 188 LKIVNAMKATG 198 (480)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 77888887643
No 351
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=29.87 E-value=59 Score=32.65 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=41.2
Q ss_pred CcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCC--ccccCcceeecCCCCcchHHHHHHHHhc
Q 002301 719 RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQ--VFTKNGWGFAFPRDSPLAVDISTAILKL 795 (940)
Q Consensus 719 ~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~~~~~il~l 795 (940)
.....++.+....++.. |...+++.+.....+ .... .+..+.. ......++++.+++.+....+...+..+
T Consensus 215 ~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~-~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 287 (300)
T 3mz1_A 215 YTMAANESTTYLAAARA----GLGVIQAPLFMVRED-LRNG-TMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 287 (300)
T ss_dssp EEEEESSHHHHHHHHHT----TCCBEEEEHHHHHHH-HHHT-SEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred ceEEECCHHHHHHHHHh----CCCEEeccHHHHHHH-HhCC-CeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHHHHH
Confidence 34557889999999998 554566654443333 3322 4444432 2344557888888866555554444433
No 352
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=29.84 E-value=19 Score=36.86 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=40.8
Q ss_pred cCCceeehhhhhhHhhccccc----ccccc----chhhhHHHHHhhhhhhhhhccceeeeeeeecc
Q 002301 622 KRQVVTIFWFSFSTMFFAHKE----KTVSA----LGRLVLIIWLFVVLIINSSYTASLTSILTVQK 679 (940)
Q Consensus 622 ~~~~~~~~~~~~~~l~~~~~~----~~~s~----~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 679 (940)
..++.+++|..+.+++..+-. .|... +.+++..+.++.++++.+.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999877532 24333 33666677777789999999999988776543
No 353
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=29.75 E-value=70 Score=22.09 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 002301 839 GLACLLALFIYLMQIVHQFSRHY 861 (940)
Q Consensus 839 ~~g~~la~~vf~~e~~~~~~~~~ 861 (940)
.+|.++.+++.+.-.+|.|+|+.
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhheehhhh
Confidence 34444444444444445444443
No 354
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=29.68 E-value=2.6e+02 Score=27.57 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=63.8
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc---CcEEEEcCCCchh
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG---QTVAIIGPQDAVT 108 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~---~v~aiiGp~~s~~ 108 (940)
+||++.... .........|+..|+++. |.++. +.....+...+...+.++++. ++.||+... ...
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~-d~~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFN-DEM 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESS-HHH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcC-hHH
Confidence 477775443 223345567888888763 22333 233445677777788888875 689999744 444
Q ss_pred HHHHHHhhccCC--cc----EEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH
Q 002301 109 SHVVSHVANELQ--VP----LLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 109 a~~va~~~~~~~--vP----~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l 159 (940)
+..+...+.+.+ || ++++.... ......|.+..+..+...++...++++
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l 243 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKI 243 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHH
Confidence 555555565554 34 55554322 111112444445556666666666654
No 355
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=29.65 E-value=1.5e+02 Score=30.57 Aligned_cols=81 Identities=7% Similarity=-0.095 Sum_probs=54.2
Q ss_pred cCCeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHH
Q 002301 162 YGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFH 239 (940)
Q Consensus 162 ~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~ 239 (940)
-.-+.|+++..+ +.|.......+.+.+++.|..+..... . .+.......++.+...+.|.||+...... ...+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 136 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-D--NDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRT 136 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-C--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHH
Confidence 344678888864 567778899999999999988765422 1 23344456677777788999998764322 24555
Q ss_pred HHHHcCC
Q 002301 240 VAQYLGM 246 (940)
Q Consensus 240 ~a~~~g~ 246 (940)
.+.+.|.
T Consensus 137 ~l~~~~i 143 (332)
T 2o20_A 137 SLKNSRT 143 (332)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 6655564
No 356
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=29.53 E-value=2.9e+02 Score=29.04 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=74.4
Q ss_pred EEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhHH
Q 002301 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTSH 110 (940)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a~ 110 (940)
.|+.+|-..+. .-+.+++.|+.++ +|..+.+...++.-.-.+.+.-+.+.++. .+.++=++. ..
T Consensus 72 ~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~----~~ 137 (358)
T 4h31_A 72 NIALIFEKAST---RTRCAFEVAAFDQ-------GAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFG----QA 137 (358)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSC----HH
T ss_pred EEEEEeCCCCh---hhHHHHHHHHHHc-------CCeEEECCcccccccCccchhHHHHHhhccCceeEecccc----hh
Confidence 57888877642 5688999999986 45555443334332222223333333333 333333332 23
Q ss_pred HHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcCC-----eEEEEEEEcCCcchhhHH
Q 002301 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYGW-----REVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~w-----~~v~ii~~d~~~g~~~~~ 182 (940)
.+..+++...||+|. +-+ +...| .+++++++ +++|+ .+|+++. | ... +...
T Consensus 138 ~~~~la~~s~vPVIN-G~g-----~~~HP------------tQaL~Dl~Ti~e~~~~~~l~gl~ia~vG-D-~~~-~va~ 196 (358)
T 4h31_A 138 IVEELGAFAGVPVWN-GLT-----DEFHP------------TQILADFLTMLEHSQGKALADIQFAYLG-D-ARN-NVGN 196 (358)
T ss_dssp HHHHHHHHSSSCEEE-SCC-----SSCCH------------HHHHHHHHHHHHTTTTCCGGGCEEEEES-C-TTS-HHHH
T ss_pred HHHHhhhhccCceEC-CCC-----cCCCc------------hHHHHHHHHHHHHhcCCCcCceEEEecC-C-CCc-ccch
Confidence 455677788999996 322 22223 35677774 45653 3565554 3 222 5667
Q ss_pred HHHHHHhcCceeEEEee
Q 002301 183 ALGDTLAAKRCRISFKA 199 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~ 199 (940)
.+...+...|.+|....
T Consensus 197 S~~~~~~~~g~~v~~~~ 213 (358)
T 4h31_A 197 SLMVGAAKMGMDIRLVG 213 (358)
T ss_dssp HHHHHHHHHTCEEEEES
T ss_pred HHHHHHHhcCceEEEeC
Confidence 77788888888877653
No 357
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=28.77 E-value=79 Score=32.71 Aligned_cols=79 Identities=4% Similarity=-0.063 Sum_probs=52.2
Q ss_pred eEEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCC--CeEEEEEecCCc-HHHHHH
Q 002301 165 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE--SRIIVVHTHYNR-GPVVFH 239 (940)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viv~~~~~~~-~~~~l~ 239 (940)
+.|+++.. ++.|.......+.+++++.|..+..... . .+.......++.+...+ .+.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT-E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC-T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC-C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 46788875 3567778888999999999988765422 1 23344455667776667 899888754332 235667
Q ss_pred HHHHcCC
Q 002301 240 VAQYLGM 246 (940)
Q Consensus 240 ~a~~~g~ 246 (940)
.+.+.|+
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7766664
No 358
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=28.72 E-value=61 Score=35.08 Aligned_cols=83 Identities=10% Similarity=0.077 Sum_probs=53.8
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcch-hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--C
Q 002301 155 IAEIVDHYGWREVIAIYVDDDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--Y 231 (940)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~ 231 (940)
+.++++ +| +++.+|+.+..... ...+.+.+.++ |+++..-....+.++.+.+...+..+++.++|+||-.+. .
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 455566 77 89988874442332 25777888886 766543333333456778888888888889999987654 3
Q ss_pred CcHHHHHHHH
Q 002301 232 NRGPVVFHVA 241 (940)
Q Consensus 232 ~~~~~~l~~a 241 (940)
-++.+++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 359
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=28.68 E-value=1.3e+02 Score=30.19 Aligned_cols=81 Identities=11% Similarity=-0.005 Sum_probs=52.5
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCC-cHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~-~~~~~l~~a 241 (940)
+.|+++..+ +.|.....+.+.+++++.|..+....... ..+...-...++.+...+.|.||+..... .....++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-EGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 357777753 56777888899999999998776543111 12333444567777777899988865433 233566777
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76664
No 360
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=28.61 E-value=1.2e+02 Score=31.34 Aligned_cols=78 Identities=10% Similarity=-0.040 Sum_probs=52.6
Q ss_pred CeEEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHH
Q 002301 164 WREVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (940)
Q Consensus 164 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a 241 (940)
-+.|+++.. ++.|.......+.+.+++.|..+..... . .+.......++.+...+.|.||+....... ..++.+
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l 135 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS-D--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEEL 135 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC-C--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHH
Confidence 357888875 4678888899999999999988765421 1 123334556777777889998887544332 455556
Q ss_pred HHcC
Q 002301 242 QYLG 245 (940)
Q Consensus 242 ~~~g 245 (940)
.+.|
T Consensus 136 ~~~~ 139 (332)
T 2hsg_A 136 KKSP 139 (332)
T ss_dssp TTSS
T ss_pred HhCC
Confidence 5544
No 361
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=28.53 E-value=75 Score=32.55 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=26.0
Q ss_pred HHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEe
Q 002301 500 FTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 543 (940)
Q Consensus 500 l~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~ 543 (940)
++...++.|+++ +.+.+ ..+..+...|.+|++|+..
T Consensus 56 ~~~~~~~~G~~V--e~~~f------~~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDIDV--EIKHF------SDYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTCCE--EEEEC------SSTTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCCeE--EEEEe------CChHHHHHHHHcCCCCEEc
Confidence 344555668875 45554 3478899999999999975
No 362
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=28.50 E-value=1.9e+02 Score=24.79 Aligned_cols=56 Identities=7% Similarity=-0.034 Sum_probs=36.7
Q ss_pred hHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CCcHHHHHHHHHHc
Q 002301 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYL 244 (940)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~~~~~~l~~a~~~ 244 (940)
....+...+++.|..+... . + ....+..+....+++|++... ..++..++++.++.
T Consensus 16 ~~~~l~~~L~~~g~~v~~~---~---~---~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~ 73 (136)
T 3t6k_A 16 VAEMLELVLRGAGYEVRRA---A---S---GEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQH 73 (136)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S---S---HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCEEEEe---C---C---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4556677777778766421 1 2 234555666678999998744 45677888888764
No 363
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=28.39 E-value=1.3e+02 Score=30.75 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEe
Q 002301 87 AEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (940)
Q Consensus 87 ~~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is 125 (940)
+.+..|.+.++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 77 ~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 77 EMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 344445556899888755555545677777788999996
No 364
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=28.18 E-value=1.4e+02 Score=30.68 Aligned_cols=80 Identities=4% Similarity=-0.024 Sum_probs=52.2
Q ss_pred CeEEEEEEEc-CCcchhhHHHHHHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCc-HHHHHHH
Q 002301 164 WREVIAIYVD-DDHGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHV 240 (940)
Q Consensus 164 w~~v~ii~~d-~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~-~~~~l~~ 240 (940)
-..|+++..+ +.|.......+.+.+++. |..+..... . .+.......+..+...+.|.||+...... ....++.
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 82 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G--DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE 82 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 4578887754 345566778888999888 888765432 1 23444456677777788999988754322 2356677
Q ss_pred HHHcCC
Q 002301 241 AQYLGM 246 (940)
Q Consensus 241 a~~~g~ 246 (940)
+.+.|+
T Consensus 83 ~~~~~i 88 (325)
T 2x7x_A 83 AYQKGI 88 (325)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 766664
No 365
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=27.85 E-value=1.4e+02 Score=31.16 Aligned_cols=65 Identities=3% Similarity=-0.117 Sum_probs=44.3
Q ss_pred CCeEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe
Q 002301 163 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT 229 (940)
Q Consensus 163 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~ 229 (940)
.-+.|+++..+ +.|....+..+.+.+++.|..+.....-. ...+.....+..+...+.|.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVER--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCS--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCC--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 44678888864 45777788899999999998876542211 1233445667777778899988874
No 366
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=27.77 E-value=68 Score=31.47 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=43.1
Q ss_pred HHHHHHhcCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEE
Q 002301 88 EALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREV 167 (940)
Q Consensus 88 ~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v 167 (940)
.+..|.+.++.+|+-+-++... .+..+-+..++|+|+. .++.++-+...+-++|
T Consensus 68 ~~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~rV 121 (231)
T 3ojc_A 68 AAISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDKI 121 (231)
T ss_dssp HHHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCEE
T ss_pred HHHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCEE
Confidence 3344445589888765555433 3355556668888852 2333333334567888
Q ss_pred EEEEEcCCcchhhHHHHHHHHhcC-ceeEE
Q 002301 168 IAIYVDDDHGRNGIAALGDTLAAK-RCRIS 196 (940)
Q Consensus 168 ~ii~~d~~~g~~~~~~l~~~l~~~-g~~v~ 196 (940)
+++.....--. ..+++.+++. |+++.
T Consensus 122 gvLaT~~T~~s---~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 122 GLLGTRYTMEQ---GFYRGRLTEKHGIEVI 148 (231)
T ss_dssp EEESCHHHHHS---TTTHHHHHHTTCCEEE
T ss_pred EEEcCHHHhhc---hHHHHHHHhcCCCEEE
Confidence 88875421111 1223444555 77664
No 367
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=27.74 E-value=2.8e+02 Score=26.62 Aligned_cols=86 Identities=8% Similarity=-0.031 Sum_probs=56.7
Q ss_pred eEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEE--EecC----CcHHHHH
Q 002301 165 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVV--HTHY----NRGPVVF 238 (940)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~--~~~~----~~~~~~l 238 (940)
.+|.+.....+.-.-+..-+...++..|.+|.+-..- .. ...++..+++.++++|.+ .+.. .....++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~---vp---~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD---VL---NENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS---CC---HHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC---CC---HHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 4565555555555566777778899999998764221 12 345667777788999999 5433 3466778
Q ss_pred HHHHHcCCCCCCeEEEec
Q 002301 239 HVAQYLGMLGTGYVWIAT 256 (940)
Q Consensus 239 ~~a~~~g~~~~~~~wi~~ 256 (940)
++.++.|....-.+|++.
T Consensus 167 ~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHHTTCGGGSEEEEES
T ss_pred HHHHHcCCCCCCEEEEEC
Confidence 888888864333466654
No 368
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=27.69 E-value=78 Score=31.70 Aligned_cols=71 Identities=6% Similarity=-0.048 Sum_probs=47.8
Q ss_pred eeHHHHHHHHHhC-CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeecCc---ceeeeeccccccccEEEE
Q 002301 495 FCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNR---TKMADFTQPYIESGLVVV 570 (940)
Q Consensus 495 ~~idll~~l~~~l-~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R---~~~v~ft~p~~~~~~~~v 570 (940)
+.-++++.+.++. +.++++.. ++-...+.+|.+|++|+++....+.++. ...+ -..|+....++++
T Consensus 17 ~l~~~~~~f~~~~P~v~i~v~~---------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTFINVQG---------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEE---------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEe---------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 4456677777766 44544433 3478889999999999988755443320 1112 3578999999999
Q ss_pred EeccC
Q 002301 571 APVRK 575 (940)
Q Consensus 571 v~~~~ 575 (940)
++...
T Consensus 87 v~~~~ 91 (264)
T 4ecf_A 87 VNKKV 91 (264)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98764
No 369
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=27.46 E-value=36 Score=33.71 Aligned_cols=74 Identities=8% Similarity=-0.009 Sum_probs=50.8
Q ss_pred eeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeecCcc---eeeeeccccccccEEE
Q 002301 493 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT---KMADFTQPYIESGLVV 569 (940)
Q Consensus 493 ~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~---~~v~ft~p~~~~~~~~ 569 (940)
.|+.-+|...+.++.|.++.+.+. .-..++.++.+|.+|+.+..-...++.. .+..--.+|+...+++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAV---------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEE---------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEEEc---------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 456667888888888877666554 3678899999999999876433222211 1111236788899999
Q ss_pred EEeccC
Q 002301 570 VAPVRK 575 (940)
Q Consensus 570 vv~~~~ 575 (940)
++|+..
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 999865
No 370
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.43 E-value=1.3e+02 Score=27.91 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHh-cCCCeEEEEEecC
Q 002301 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA-LTESRIIVVHTHY 231 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viv~~~~~ 231 (940)
-..+.+.|++.|+++.....++ .+.+.+...+.+.. ..++|+||..+..
T Consensus 42 g~~L~~~L~~~G~~v~~~~iV~--Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 4568888999999999888887 56677777777654 4578999988543
No 371
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=27.23 E-value=3.2e+02 Score=28.20 Aligned_cols=136 Identities=11% Similarity=0.144 Sum_probs=75.7
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCC------------HHHHHHHHHHHHhc--Cc
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHS------------GFLALAEALHLMEG--QT 97 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~------------~~~a~~~a~~li~~--~v 97 (940)
-.|+.+|--.+ ..-+.+++.|+.++ +|..+.+...++.-. -.+.+.-+.+.++. .+
T Consensus 37 k~l~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~ 106 (324)
T 1js1_X 37 KTLLMIFFNSS---LRTRLSTQKAALNL-------GMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDI 106 (324)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSE
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcE
Confidence 46888887665 36788999999986 344444433332211 11223333333443 33
Q ss_pred EEEEcCCCc------hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---Ce
Q 002301 98 VAIIGPQDA------VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WR 165 (940)
Q Consensus 98 ~aiiGp~~s------~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~ 165 (940)
.++=.+.+- .....+..+++..+||+|. +.+ +...| .+++++++ +++| .+
T Consensus 107 IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVIN--a~~----~~~HP------------tQaLaDl~Ti~e~~g~~~l~ 168 (324)
T 1js1_X 107 IGVRSFARFENREYDYNEVIINQFIQHSGRPVFS--MEA----ATRHP------------LQSFADLITIEEYKKTARPK 168 (324)
T ss_dssp EEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEE--SSC----SSCCH------------HHHHHHHHHHHHHCSSSSCE
T ss_pred EEEecccccccccccccchHHHHHHhhCCCCEEE--CCC----CCCCc------------HHHHHHHHHHHHHcCCCCee
Confidence 333343110 0223455667777899997 322 22223 35677763 6677 34
Q ss_pred EEEEEE-----EcCCcchhhHHHHHHHHhcCceeEEEee
Q 002301 166 EVIAIY-----VDDDHGRNGIAALGDTLAAKRCRISFKA 199 (940)
Q Consensus 166 ~v~ii~-----~d~~~g~~~~~~l~~~l~~~g~~v~~~~ 199 (940)
+.+.+ .-| .+....+...+...|.+|....
T Consensus 169 -l~ia~a~~~~vGD---~rva~Sl~~~~~~~G~~v~~~~ 203 (324)
T 1js1_X 169 -VVMTWAPHPRPLP---QAVPNSFAEWMNATDYEFVITH 203 (324)
T ss_dssp -EEEECCCCSSCCC---SHHHHHHHHHHHTSSSEEEEEC
T ss_pred -EEEEEEcccccCC---cchHHHHHHHHHHCCCEEEEeC
Confidence 44444 333 4567778888888898887654
No 372
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=27.20 E-value=90 Score=31.73 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=40.8
Q ss_pred EEEecCCCCHHHHHHHHHH-HHhc-CcEEEEcCCCchhHHHHHHhhccCCccEE
Q 002301 73 LQMQDCNHSGFLALAEALH-LMEG-QTVAIIGPQDAVTSHVVSHVANELQVPLL 124 (940)
Q Consensus 73 ~~~~D~~~~~~~a~~~a~~-li~~-~v~aiiGp~~s~~a~~va~~~~~~~vP~I 124 (940)
+...|+=|+...--+.+.+ |..+ .+..|||...|+-+..+.++|...+.|-.
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 3468999988877665554 4444 78888999999999999999999887754
No 373
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=27.05 E-value=1.8e+02 Score=30.66 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=74.2
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC---CCHHHHHHHHHHHHhcCcEEEEcCCCchh
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN---HSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~---~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 108 (940)
-.|+.+|..++ ..-+.+++.|+.++ +|..+.+...++. +....-......-+- .+.++=++..
T Consensus 72 K~va~lF~e~S---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~-D~IviR~~~~--- 137 (365)
T 4amu_A 72 KNIAILFQKDS---TRTRCAFEVAASDL-------GAGVTYIGPSGSNMGKKESIEDTAKVLGRFY-DGIEFRGFAQ--- 137 (365)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHH-------TCEEEEECHHHHCCSSSSCHHHHHHHHHHHC-SEEEEECSCH---
T ss_pred ceEEEEecCCC---chHHHHHHHHHHhC-------CCEEEEcCCccccCCCCcCHHHHHHHHHhhC-cEEEEecCCh---
Confidence 56888888765 35788999999997 3445544333332 333222222222221 3333334332
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCcchhhHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~ 182 (940)
..+..+++..+||+|.-. ++ ...| .+++++++ +++| -.+|+++. |..+ +...
T Consensus 138 -~~~~~lA~~s~vPVINa~-~~-----~~HP------------tQaLaDl~Ti~E~~G~l~glkva~vG-D~~n--nva~ 195 (365)
T 4amu_A 138 -SDVDALVKYSGVPVWNGL-TD-----DEHP------------TQIIADFMTMKEKFGNLKNKKIVFIG-DYKN--NVGV 195 (365)
T ss_dssp -HHHHHHHHHHCSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHHSSCTTCEEEEES-STTS--HHHH
T ss_pred -hHHHHHHHhCCCCEEeCC-CC-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC-CCCc--chHH
Confidence 234456666789999743 22 2223 35567663 5565 46676654 3322 4677
Q ss_pred HHHHHHhcCceeEEEee
Q 002301 183 ALGDTLAAKRCRISFKA 199 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~ 199 (940)
.+...+...|.++....
T Consensus 196 Sl~~~~~~lG~~v~~~~ 212 (365)
T 4amu_A 196 STMIGAAFNGMHVVMCG 212 (365)
T ss_dssp HHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 78888888898876543
No 374
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=26.99 E-value=3.1e+02 Score=28.77 Aligned_cols=136 Identities=10% Similarity=0.150 Sum_probs=74.6
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEe------c---------CCCCHHHHHHHHHHHHhc-
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQ------D---------CNHSGFLALAEALHLMEG- 95 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~------D---------~~~~~~~a~~~a~~li~~- 95 (940)
-.|+.+|-..+ ..-+.+++.|+.++ +|..+.+... + .++.... -+.+.++.
T Consensus 59 k~la~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~~ss~~~s~~~~vm~~~kgEsl~---DTarvLs~y 125 (359)
T 1zq6_A 59 KSIALVFFNPS---MRTRTSFELGAFQL-------GGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIA---EVARVLGRY 125 (359)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECHHHHSCCEECSSSCCCCSSCCEEHH---HHHHHHHHH
T ss_pred CEEEEEeCCCC---cchhhhHHHHHHHc-------CCeEEEeCCCcccccccccccccccCCCCCcHH---HHHHHHHHh
Confidence 46788887765 35788999999986 3445544332 2 3333333 22223333
Q ss_pred -CcEEEEcCCCc------hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHH---HHHcCC-
Q 002301 96 -QTVAIIGPQDA------VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI---VDHYGW- 164 (940)
Q Consensus 96 -~v~aiiGp~~s------~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~---l~~~~w- 164 (940)
.+.++=.+..- .....+..+++..+||+|. +.+ +. .| .++++++ .+++|.
T Consensus 126 ~D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVIN--ag~----g~-HP------------tQaLaDl~TI~E~~g~~ 186 (359)
T 1zq6_A 126 VDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN--MET----IT-HP------------CQELAHALALQEHFGTP 186 (359)
T ss_dssp CSEEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEE--SSS----SC-CH------------HHHHHHHHHHHHHHTSS
T ss_pred CcEEEEeccccccccccccchHHHHHHHHhCCCCEEe--CCC----CC-Cc------------HHHHHHHHHHHHHhCCC
Confidence 33333344110 0223445666778999996 322 21 22 3556665 356664
Q ss_pred ----eEEEEEE-EcCCc-chhhHHHHHHHHhcCceeEEEee
Q 002301 165 ----REVIAIY-VDDDH-GRNGIAALGDTLAAKRCRISFKA 199 (940)
Q Consensus 165 ----~~v~ii~-~d~~~-g~~~~~~l~~~l~~~g~~v~~~~ 199 (940)
.+|++.+ .|=-+ |.+.+..+...+...|.++....
T Consensus 187 ~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~G~~v~~~~ 227 (359)
T 1zq6_A 187 DLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLC 227 (359)
T ss_dssp CCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred cccCCeeEEEEEecccccccchHHHHHHHHHHcCCEEEEEc
Confidence 5633333 23223 35667778888888888776653
No 375
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=26.94 E-value=77 Score=31.98 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=0.0
Q ss_pred CcchhHHHH--HHHHHHHHHhhhhcccC--CCCceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEe
Q 002301 1 MKLSGVMLL--MIFYCELFVYRITAQAS--GRPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQ 76 (940)
Q Consensus 1 Mk~~~~~~l--~~~~~~~~~~~~~~~~~--~~~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~ 76 (940)
|.+++++.+ +++++++++++|..... ...+.|+|.+--.+ ...++...++..+.. ||.++.+..
T Consensus 4 M~kk~~~~~~~~~~l~~~~l~gc~~~~~~~~~~~~i~i~GSss~--------~p~~~~~a~~f~~~~---p~v~v~~~~- 71 (279)
T 4gd5_A 4 MFKKRLIAIIGTIFIGATAMVGCNSGGSEAKSTNSVSISGSTSV--------GPVMEAEAEAFKTKK---PDVSIEINQ- 71 (279)
T ss_dssp ---------------------------------CEEEEEECTTT--------HHHHHHHHHHHHHHS---TTCEEEEEE-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccCCCCcccCCCeEEEEEeCcH--------HHHHHHHHHHHHHHC---CCceEEEee-
Q ss_pred cCCCCHHHHHHHHHH
Q 002301 77 DCNHSGFLALAEALH 91 (940)
Q Consensus 77 D~~~~~~~a~~~a~~ 91 (940)
.....++++.++
T Consensus 72 ---~GSg~g~~~~~~ 83 (279)
T 4gd5_A 72 ---IGSSAGIKNAME 83 (279)
T ss_dssp ---CCHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHc
No 376
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=26.85 E-value=1.1e+02 Score=30.78 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=58.0
Q ss_pred CCeEEE--eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEech---------hhHHHHHhcCCcEE
Q 002301 695 YPIGYQ--VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDR---------AYAELFLSTRCEFS 763 (940)
Q Consensus 695 ~~i~~~--~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~---------~~~~~~~~~~~~l~ 763 (940)
.+|+++ .|+|.+....+..+.....++++.+.++.++++.+ |++|..+... ..++.+.+. +++
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~~--~l~ 77 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVAD----DDTSIGVVPIENSIEGTINIVADALAQQ--DVF 77 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHH----CSSEEEEEEEESCSSSCSHHHHHHHHTT--SSE
T ss_pred cEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHc----CCCCEEEEEehhcCCCChHHHHHHhhcC--CcE
Confidence 357776 68888776655443222347899999999999999 6766554432 234444443 699
Q ss_pred EeCCccccCcceeecCCCCc
Q 002301 764 IVGQVFTKNGWGFAFPRDSP 783 (940)
Q Consensus 764 ~~~~~~~~~~~~~~~~k~sp 783 (940)
++++.+.+...++...+|..
T Consensus 78 I~gE~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 78 AHGEIRLDINFALYGNGTDS 97 (267)
T ss_dssp EEEEEEEECCEEEECCSSCC
T ss_pred EEEEEEEEeeeEEEecCCCC
Confidence 99999888888888877753
No 377
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=26.80 E-value=1.2e+02 Score=27.80 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=41.7
Q ss_pred EEEEEEEcCCc--c---hhhHHHHHHH----HhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec
Q 002301 166 EVIAIYVDDDH--G---RNGIAALGDT----LAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (940)
Q Consensus 166 ~v~ii~~d~~~--g---~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~ 230 (940)
++++|...|+- | ......+.+. +++.|+++.....++ .+.+.+...+++..+.+.|+||..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVP--EGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEEC--SSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 56666654332 1 2234567777 888999988877777 67778888888876656899998854
No 378
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=26.76 E-value=2.3e+02 Score=26.23 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=42.2
Q ss_pred EEEEEEEcCC--cc---hhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec
Q 002301 166 EVIAIYVDDD--HG---RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (940)
Q Consensus 166 ~v~ii~~d~~--~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~ 230 (940)
++++|...|+ .| ......+.+.+++.|+++.....++ .+.+.+...+++..+ +.|+||..+.
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~-~~DlVittGG 71 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVM--DDLDEIGWAFRVALE-VSDLVVSSGG 71 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHH-HCSEEEEESC
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHh-cCCEEEEcCC
Confidence 5666664433 12 2345677888888899888877777 567777777777654 3788888753
No 379
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=26.65 E-value=3.2e+02 Score=23.82 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CCcHHHHHHHHHHcC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 245 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~~~~~~l~~a~~~g 245 (940)
.....+.+.+++.|..+... . +....+..++...+++||+... ..++..+++..++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---~------~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEHV---R------NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE---S------SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEEe---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 35667778888888765422 1 2345667777788999999854 456778888888764
No 380
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=26.65 E-value=1.5e+02 Score=29.70 Aligned_cols=77 Identities=5% Similarity=-0.053 Sum_probs=51.3
Q ss_pred CeEEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHH
Q 002301 164 WREVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (940)
Q Consensus 164 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a 241 (940)
-+.|+++.. ++.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+...... ...++.+
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l 83 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT-E--SDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQNI 83 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHH
Confidence 357888876 3567778889999999999988765431 1 23344456677777788999988753222 2445555
Q ss_pred HHcC
Q 002301 242 QYLG 245 (940)
Q Consensus 242 ~~~g 245 (940)
. .|
T Consensus 84 ~-~~ 86 (285)
T 3c3k_A 84 I-GA 86 (285)
T ss_dssp H-TT
T ss_pred h-cC
Confidence 4 44
No 381
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.63 E-value=2.8e+02 Score=23.06 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CCcHHHHHHHHHHc
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYL 244 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~~~~~~l~~a~~~ 244 (940)
...+.+.+.+++.|..+... . +....+..+++..+++|++... ..++..++++.++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV---M------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---S------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE---C------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 35666777888888765432 1 2245566666778999999854 46678899998886
No 382
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.41 E-value=2.2e+02 Score=28.67 Aligned_cols=111 Identities=12% Similarity=0.007 Sum_probs=64.0
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhH--
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS-- 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a-- 109 (940)
=+||++..-+...+.....+++.|+++. |.++......+ .....+++.++. +++.||+-+......
T Consensus 141 ~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g~ 208 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAKH--------GIKLVEATALK---SADVQSATQAIA-EKSDVIYALIDNTVASA 208 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHT--------TCEEEEEECSS---GGGHHHHHHHHG-GGCSEEEECSCHHHHTT
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---hHHHHHHHHHHh-ccCCEEEECCcHhHHHH
Confidence 3688887554333455567777777763 44554433322 223344555555 478888876654332
Q ss_pred -HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH
Q 002301 110 -HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 110 -~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l 159 (940)
.++...+...++|+++|.... +. .|-+.....+...+++..++++
T Consensus 209 ~~~l~~~~~~~~i~vig~d~~~--~~---~~~Lttv~~~~~~~G~~Aa~~l 254 (302)
T 2qh8_A 209 IEGMIVAANQAKTPVFGAATSY--VE---RGAIASLGFDYYQIGVQTADYV 254 (302)
T ss_dssp HHHHHHHHHHTTCCEEESSHHH--HH---TTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEECCHHH--Hh---CCcEEEEeCCHHHHHHHHHHHH
Confidence 234445556799999875321 11 1545556677777777777764
No 383
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=26.36 E-value=2e+02 Score=28.59 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=67.8
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTS 109 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a 109 (940)
+||++.... .........|+..|+++.+-. ..... +.....+...+.+.+.+++.. ++.||+... ...+
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a 200 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIK------ISENH-IIAAENSIHGGVDAAKKLMKLKNTPKALFCNS-DSIA 200 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCB------CCGGG-EEECCSSHHHHHHHHHHHTTSSSCCSEEEESS-HHHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCC------CChhh-eeccCCCHHHHHHHHHHHHcCCCCCcEEEEcC-CHHH
Confidence 466665543 233345567888888774211 11011 123445777778888888876 688999744 4444
Q ss_pred HHHHHhhccCC--cc----EEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH
Q 002301 110 HVVSHVANELQ--VP----LLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 110 ~~va~~~~~~~--vP----~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l 159 (940)
..+...+.+.+ || ++++...+..+.....|-+-.+..+...+++..++++
T Consensus 201 ~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l 256 (289)
T 3g85_A 201 LGVISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDIPIEEMAGTCISLV 256 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcCCHHHHHHHHHHHH
Confidence 44445555443 34 7877622222223233555566677777777777765
No 384
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.22 E-value=2.2e+02 Score=27.12 Aligned_cols=86 Identities=9% Similarity=-0.005 Sum_probs=55.7
Q ss_pred eEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC----CcHHHHHHH
Q 002301 165 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY----NRGPVVFHV 240 (940)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~----~~~~~~l~~ 240 (940)
.+|.+....++.-.-+...+...++.+|.+|.+-.. ... ...++..++..++++|.+.+.. .....++++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---~vp---~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---DIE---PGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---SBC---HHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---CCC---HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 467666666666666677788888999999875332 122 2345556666789999998653 345667777
Q ss_pred HHHcCCCCCCeEEEec
Q 002301 241 AQYLGMLGTGYVWIAT 256 (940)
Q Consensus 241 a~~~g~~~~~~~wi~~ 256 (940)
.++.|....-.++++.
T Consensus 163 l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHTTCGGGCEEEEES
T ss_pred HHhcCCCCCCeEEEEC
Confidence 7777754333455553
No 385
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=25.97 E-value=1.2e+02 Score=30.63 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=52.9
Q ss_pred CeEEEEEEE------cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHH
Q 002301 164 WREVIAIYV------DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVV 237 (940)
Q Consensus 164 w~~v~ii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~ 237 (940)
=+.|+++.. ++.|.......+.+.+++.|..+.....-. .......++.+...+.|.||+....... ..
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 80 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP----GEKYQSLIHLVETRRVDALIVAHTQPED-FR 80 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT----TCCCHHHHHHHHHTCCSEEEECSCCSSC-HH
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC----hhhHHHHHHHHHcCCCCEEEEeCCCCCh-HH
Confidence 357888887 356777889999999999998877654322 1222345566666789999887554333 56
Q ss_pred HHHHHHcCC
Q 002301 238 FHVAQYLGM 246 (940)
Q Consensus 238 l~~a~~~g~ 246 (940)
++.+.+.|+
T Consensus 81 ~~~l~~~~i 89 (294)
T 3qk7_A 81 LQYLQKQNF 89 (294)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 677777664
No 386
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=25.81 E-value=88 Score=28.78 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=44.2
Q ss_pred eEEEEEEEcCCc--c---hhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec
Q 002301 165 REVIAIYVDDDH--G---RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (940)
Q Consensus 165 ~~v~ii~~d~~~--g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~ 230 (940)
.+|++|...|+- | ......+.+.+++.|.++.....++ .+ +.+...+++..+.++|+||..+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~--Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA--DG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC--SS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC--CH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 467777654431 2 2345677888899999988777676 56 78888888766557899998854
No 387
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=25.53 E-value=95 Score=32.01 Aligned_cols=85 Identities=11% Similarity=0.134 Sum_probs=56.4
Q ss_pred CCCeEEE--eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEech---------hhHHHHHhcCCcE
Q 002301 694 NYPIGYQ--VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDR---------AYAELFLSTRCEF 762 (940)
Q Consensus 694 ~~~i~~~--~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~---------~~~~~~~~~~~~l 762 (940)
..+|+++ .|+|.+.-..+........++++.+.++.++++.+ |.+|..+... ..++.+ .+..++
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~tlD~L-~~~~~l 80 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRA----GEADAAMVPIENSVEGGVTATLDAI-ATGQEL 80 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHT----TSCSEEEEEEESCTTCCHHHHHHHT-TSSSCC
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHc----CCCCeeEEEEeecCCCccHHHHHHh-hCCCCe
Confidence 3468886 68888777644322233567889999999999999 6665433321 123333 333479
Q ss_pred EEeCCccccCcceeecCCCCc
Q 002301 763 SIVGQVFTKNGWGFAFPRDSP 783 (940)
Q Consensus 763 ~~~~~~~~~~~~~~~~~k~sp 783 (940)
+++++.+.+...++...+|..
T Consensus 81 ~IvgE~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 81 RIIREALVPITFVLVARPGVE 101 (313)
T ss_dssp EEEEEEEEECCCEEEECTTCC
T ss_pred EEEEEEEEeeeEEEEcCCCCC
Confidence 999998888888887776644
No 388
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=25.51 E-value=3.8e+02 Score=26.67 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=62.0
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhH--
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS-- 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a-- 109 (940)
=+||++..-+...+.....+++.|+++. |.++......+ .....+++.++. +++.||+-+......
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g~ 201 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKA--------GLTVETFAVPS---TNEIASTVTVMT-SKVDAIWVPIDNTIASG 201 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEESS---GGGHHHHHHHHT-TTCSEEEECSCHHHHHT
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---HHHHHHHHHHHH-hcCCEEEECCchhHHHH
Confidence 4678876654333445567777777763 34554333222 123334444554 478888876654332
Q ss_pred -HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH
Q 002301 110 -HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 110 -~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l 159 (940)
.++...+...++|+++|.... +. .|-+.....+...+++..++++
T Consensus 202 ~~~l~~~~~~~~i~vig~d~~~--~~---~~~Lttv~~~~~~~G~~Aa~~l 247 (295)
T 3lft_A 202 FPTVVSSNQSSKKPIYPSATAM--VE---VGGLASVVIDQHDLGVATGKMI 247 (295)
T ss_dssp HHHHHHHTTTTCCCEEESSHHH--HT---TTCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeCCHHH--Hh---cCcEEEEecCHHHHHHHHHHHH
Confidence 224445556789999875321 11 1334455566777777777664
No 389
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=25.48 E-value=52 Score=33.37 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=48.2
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+|+||+.. .+ ...+..+++..+.+..+ .+++.... ...+..+.+|++|+++....
T Consensus 93 g~l~I~~~~--~~-----------~~~~l~~~l~~f~~~~P-~v~i~l~~----------~~~~~~l~~~~~Dl~i~~~~ 148 (306)
T 3hhg_A 93 GVLSVDSAM--PM-----------VLHLLAPLAAKFNERYP-HIRLSLVS----------SEGYINLIERKVDIALRAGE 148 (306)
T ss_dssp EEEEEEBCH--HH-----------HHHTHHHHHHHHHHHCT-TEEEEEEC----------CSSSHHHHTTSSSCEEESCC
T ss_pred CcEEEEccH--HH-----------HHHHHHHHHHHHHHHCC-CeEEEEEe----------ccchhhHhhcCccEEEEeCC
Confidence 568998862 11 23456678888888775 34455441 12345688999999987432
Q ss_pred eecCcceeeeeccccccccEEEEEecc
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVR 574 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~ 574 (940)
.. ...+. ..|+....+++++++.
T Consensus 149 ~~---~~~l~-~~~L~~~~~~~v~~~~ 171 (306)
T 3hhg_A 149 LD---DSGLR-ARHLFDSRFRVIASPE 171 (306)
T ss_dssp CC---CSSCE-EEEEEEEEEEEEECHH
T ss_pred CC---CCCeE-EEEeeeeEEEEEECHH
Confidence 22 22222 3566777888888654
No 390
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=25.30 E-value=1.1e+02 Score=31.93 Aligned_cols=78 Identities=9% Similarity=-0.011 Sum_probs=52.0
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 242 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~ 242 (940)
+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+.......++.+...+.|.||+...... ...++.+.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 142 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS-N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQ 142 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC-T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHH
Confidence 568888754 567778889999999999988765422 1 23344556677777788998888754332 34566666
Q ss_pred HcCC
Q 002301 243 YLGM 246 (940)
Q Consensus 243 ~~g~ 246 (940)
+.|.
T Consensus 143 ~~~i 146 (348)
T 3bil_A 143 KQGM 146 (348)
T ss_dssp HC-C
T ss_pred hCCC
Confidence 6664
No 391
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=24.82 E-value=3.9e+02 Score=24.19 Aligned_cols=93 Identities=5% Similarity=-0.058 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCC--C--CCChhHHHHHHHHHh-cCCCeEEEE
Q 002301 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLS--V--EATEDEITDLLVKVA-LTESRIIVV 227 (940)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~--~--~~~~~~~~~~l~~l~-~~~~~viv~ 227 (940)
..+.+.+..+|--..+..|.+ ..+......+.+.|...|+++..+.... . ..+..|+.-.+.-+. ....+.+|+
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 345555555554444445533 2233556778899999999887543221 1 123445433333322 245788888
Q ss_pred EecCCcHHHHHHHHHHc-CC
Q 002301 228 HTHYNRGPVVFHVAQYL-GM 246 (940)
Q Consensus 228 ~~~~~~~~~~l~~a~~~-g~ 246 (940)
.+.-.+...+++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 88888999999999994 84
No 392
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=24.73 E-value=3e+02 Score=22.80 Aligned_cols=57 Identities=14% Similarity=-0.032 Sum_probs=36.9
Q ss_pred hHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CCcHHHHHHHHHHcC
Q 002301 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 245 (940)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~~~~~~l~~a~~~g 245 (940)
....+...+++.|..+... . +....+..++...+++|++... ..++..++++.++..
T Consensus 14 ~~~~l~~~l~~~g~~v~~~---~------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 14 LRKIVSFNLKKEGYEVIEA---E------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHCCcEEEEe---C------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 4556667777778766421 1 2235566677778999998743 456778888877643
No 393
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=24.62 E-value=2e+02 Score=28.58 Aligned_cols=64 Identities=9% Similarity=-0.031 Sum_probs=45.7
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~ 231 (940)
+.|+++..+ +.|.......+.+++++.|..+..... ..+.+.....++.+...+.|.||+....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcC---CCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 578888753 567778888999999999988765321 1244455566777777889998887544
No 394
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=24.52 E-value=3.1e+02 Score=27.46 Aligned_cols=87 Identities=15% Similarity=-0.025 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-
Q 002301 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (940)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~- 231 (940)
..+|+-....|-..+.++. |..|..+..+.+...-+..++.|..+..+- +. -++.+.+..++|.|++.+..
T Consensus 82 ~~~A~~y~~~GA~~IsVlt-d~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~---d~----~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLT-DTPSFQGAPEFLTAARQACSLPALRKDFLF---DP----YQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CSTTTCCCHHHHHHHHHTSSSCEEEESCCC---ST----HHHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEec-cccccCCCHHHHHHHHHhcCCCEEECCccC---CH----HHHHHHHHcCCCEEEEccccc
Confidence 4566777888988888776 444554566667666556677777554332 11 14667778999999998643
Q ss_pred --CcHHHHHHHHHHcCCC
Q 002301 232 --NRGPVVFHVAQYLGML 247 (940)
Q Consensus 232 --~~~~~~l~~a~~~g~~ 247 (940)
.....++..++++||.
T Consensus 154 ~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 154 DDDLAKELEDTAFALGMD 171 (272)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 3567889999999974
No 395
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=24.33 E-value=1e+02 Score=30.89 Aligned_cols=78 Identities=5% Similarity=-0.170 Sum_probs=50.3
Q ss_pred eEEEEEEE------cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHH
Q 002301 165 REVIAIYV------DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVF 238 (940)
Q Consensus 165 ~~v~ii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l 238 (940)
+.|+++.. ++.|.....+.+.+++++.|..+..... . .+.......++.+...+.|.||+....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF-S--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC-C--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC-C--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 45777764 3467788899999999999988765321 1 122223456677777889999887543222 456
Q ss_pred HHHHHcCC
Q 002301 239 HVAQYLGM 246 (940)
Q Consensus 239 ~~a~~~g~ 246 (940)
+.+.+.|.
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 66666664
No 396
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=24.31 E-value=30 Score=36.18 Aligned_cols=64 Identities=8% Similarity=0.049 Sum_probs=19.0
Q ss_pred CcchhHHHHHHHH-HHHHHhhhhcccC-CCCceEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEE
Q 002301 1 MKLSGVMLLMIFY-CELFVYRITAQAS-GRPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQM 75 (940)
Q Consensus 1 Mk~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~ 75 (940)
||++.++.+++++ +++++++|+.... ...++|+|..- .. ......+-.++++++.. |+++++..
T Consensus 4 Mkk~~~~~~~~~~~~~~~lagC~~~~~~~~~~~l~v~~~---~~----~~~~~~~~~~~~f~~~~----gi~V~~~~ 69 (351)
T 4edp_A 4 MKKKILATLLTGLVLGTSLVGCGKTEGAEAGKKLVVSTW---GL----NEDVLKETVFEPFAKEH----GVEIVLDI 69 (351)
T ss_dssp --------------------------------CEEEEEC---CT----THHHHHHHTHHHHHHHH----TCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCCCccCCCCeEEEEEc---cC----cHHHHHHHHHHHHHHHH----CCEEEEEe
Confidence 7776554443322 2234556665432 33356777432 11 12344555667777664 56788765
No 397
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=24.14 E-value=1.9e+02 Score=29.09 Aligned_cols=72 Identities=8% Similarity=-0.037 Sum_probs=48.8
Q ss_pred HHHHHcCCeEEEEEEEc--CCcch-hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC
Q 002301 157 EIVDHYGWREVIAIYVD--DDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (940)
Q Consensus 157 ~~l~~~~w~~v~ii~~d--~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~ 231 (940)
+-++.-+-+.|+++..+ +.|.. .....+.+++++.|..+.....- .+.......++.+...+.|.||+....
T Consensus 6 r~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 6 RLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG---GSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp ------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 33444556789998865 45666 88999999999999888754321 244455667778888889999987543
No 398
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=24.09 E-value=82 Score=31.73 Aligned_cols=78 Identities=8% Similarity=0.001 Sum_probs=46.3
Q ss_pred CeEEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEe-ecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHH
Q 002301 164 WREVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFK-APLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 240 (940)
Q Consensus 164 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~-~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~ 240 (940)
=+.|+++.. ++.|.......+.+++++.|..+... ..- .+.......++.+...+.|.||+...... ...++.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 83 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGS---ADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQL 83 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------CHHHHHHSSCCSEEEEESCC-----CHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHHH
Confidence 357888875 46688888999999999999887653 211 12222345667777778999888754322 234555
Q ss_pred HHHcC
Q 002301 241 AQYLG 245 (940)
Q Consensus 241 a~~~g 245 (940)
+.+.|
T Consensus 84 l~~~~ 88 (290)
T 3clk_A 84 LQSSD 88 (290)
T ss_dssp HHCC-
T ss_pred HHhCC
Confidence 55544
No 399
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=24.02 E-value=3.9e+02 Score=23.93 Aligned_cols=77 Identities=9% Similarity=0.026 Sum_probs=43.0
Q ss_pred eEEEEEEEcC-CcchhhHHHHHHHHhcCceeEEEeecCCCCCChh-HHHHHHHHHhcCCCeEEEEEecCC--cH--HHHH
Q 002301 165 REVIAIYVDD-DHGRNGIAALGDTLAAKRCRISFKAPLSVEATED-EITDLLVKVALTESRIIVVHTHYN--RG--PVVF 238 (940)
Q Consensus 165 ~~v~ii~~d~-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-~~~~~l~~l~~~~~~viv~~~~~~--~~--~~~l 238 (940)
+++.++|... ...+..++.+.+.+.+.|+.+.... +. .. +...++..+. +.|.||+.+..- .. ..++
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~-~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~l 77 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVD-LG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQGAL 77 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEE-SS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEE-Cc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHHH
Confidence 5788888432 2334567888888888887654322 22 12 3344444554 467777775532 22 2455
Q ss_pred HHHHHcCCCC
Q 002301 239 HVAQYLGMLG 248 (940)
Q Consensus 239 ~~a~~~g~~~ 248 (940)
.........+
T Consensus 78 ~~l~~~~~~~ 87 (159)
T 3fni_A 78 STILGSVNEK 87 (159)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHhhcccC
Confidence 5555544433
No 400
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=23.55 E-value=4.3e+02 Score=26.87 Aligned_cols=132 Identities=15% Similarity=0.208 Sum_probs=78.8
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE--cCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII--GPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~s~~a 109 (940)
-.|+.+|-..+ ..-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+ .+ ..
T Consensus 46 k~~~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~~--- 111 (301)
T 2ef0_A 46 KVLALLFEKPS---LRTRTTLEVAMVHL-------GGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVF-RH--- 111 (301)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECS-SH---
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecC-Ch---
Confidence 46788887654 46789999999986 45666665555443333344444455555344443 33 22
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCcchhhHHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAA 183 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 183 (940)
..+..+++..++|+|.- .+ +...| .+++++++ +++| -.+|+++. | . .+.+..
T Consensus 112 ~~~~~la~~~~vPVINa-~~-----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~ia~vG-D-~--~rva~S 169 (301)
T 2ef0_A 112 ETVEALARHAKVPVVNA-LS-----DRAHP------------LQALADLLTLKEVFGGLAGLEVAWVG-D-G--NNVLNS 169 (301)
T ss_dssp HHHHHHHHHCSSCEEEE-EC-----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES-C-C--CHHHHH
T ss_pred HHHHHHHHHCCCCEEeC-CC-----CccCc------------hHHHHHHHHHHHHhCCcCCcEEEEEC-C-C--chhHHH
Confidence 23445666778999983 22 22223 35677763 5555 35666554 2 2 456777
Q ss_pred HHHHHhcCceeEEEee
Q 002301 184 LGDTLAAKRCRISFKA 199 (940)
Q Consensus 184 l~~~l~~~g~~v~~~~ 199 (940)
+...+...|.+|....
T Consensus 170 l~~~~~~~g~~v~~~~ 185 (301)
T 2ef0_A 170 LLEVAPLAGLKVRVAT 185 (301)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 7778888888877654
No 401
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=23.30 E-value=1.3e+02 Score=30.02 Aligned_cols=72 Identities=8% Similarity=0.015 Sum_probs=46.3
Q ss_pred eeHHHHHHHHHhC-CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeec-Ccceeee-eccccccccEEEEE
Q 002301 495 FCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIIT-NRTKMAD-FTQPYIESGLVVVA 571 (940)
Q Consensus 495 ~~idll~~l~~~l-~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~-~R~~~v~-ft~p~~~~~~~~vv 571 (940)
+.-.+++.+.++. +.++++.. +.-...+.++.+|++|+++.+..... +..+.-+ -..|+...++++++
T Consensus 17 ~~~~~~~~F~~~~P~v~i~v~~---------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvvvv 87 (265)
T 4exl_A 17 LVEVAADEFGTIHVGKTVNVQG---------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLALIV 87 (265)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEee---------CCcHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEEEE
Confidence 3345667777766 45544443 34788899999999999886533221 0111111 25788899999999
Q ss_pred eccC
Q 002301 572 PVRK 575 (940)
Q Consensus 572 ~~~~ 575 (940)
+...
T Consensus 88 ~~~~ 91 (265)
T 4exl_A 88 NKEV 91 (265)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8654
No 402
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.05 E-value=2.7e+02 Score=23.67 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=37.8
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CCcHHHHHHHHHH
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQY 243 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~~~~~~l~~a~~ 243 (940)
.....+.+.+++.|..+... . +....+..++...+++||+... ..++..++++.++
T Consensus 17 ~~~~~l~~~l~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDMV---H------SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---C------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCeEEEE---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34566777787788775432 1 2345566667788999999744 4567788888876
No 403
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=23.04 E-value=29 Score=33.81 Aligned_cols=31 Identities=10% Similarity=0.197 Sum_probs=28.2
Q ss_pred CcEEEEcCCCchhHHHHHHhhccCCccEEee
Q 002301 96 QTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (940)
Q Consensus 96 ~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~ 126 (940)
++..|+||..|+-......+++.+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7889999999999888889999999999974
No 404
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.00 E-value=3.3e+02 Score=22.69 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=37.2
Q ss_pred hHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CCcHHHHHHHHHHcC
Q 002301 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 245 (940)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~~~~~~l~~a~~~g 245 (940)
....+.+.+++.|..+... . + ....+..++...+++|++... ..++..++++.++..
T Consensus 18 ~~~~l~~~L~~~g~~v~~~---~---~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 18 MAAAIERVLKRDHWQVEIA---H---N---GFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S---S---HHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCcEEEEe---C---C---HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 4556667777777766532 1 2 234555666678999998854 346778888887654
No 405
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=22.97 E-value=2.1e+02 Score=27.38 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=54.0
Q ss_pred HHHHHHHcCCeEEEEEEEcC--CcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCC
Q 002301 155 IAEIVDHYGWREVIAIYVDD--DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN 232 (940)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~ 232 (940)
+.+++...+-++|++|-... +-.....+.+++++++.|+++....... .+.+++...+. +++.|++.+ .
T Consensus 18 ~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~--~~~~~~~~~l~-----~ad~I~l~G--G 88 (206)
T 3l4e_A 18 FTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT--ESLGEITTKLR-----KNDFIYVTG--G 88 (206)
T ss_dssp HHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT--SCHHHHHHHHH-----HSSEEEECC--S
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CChHHHHHHHH-----hCCEEEECC--C
Confidence 44455455568998885221 1113467888999999998766432222 23444444443 367888765 3
Q ss_pred cHHHHHHHHHHcCCCC-------CCeEEEecC
Q 002301 233 RGPVVFHVAQYLGMLG-------TGYVWIATS 257 (940)
Q Consensus 233 ~~~~~l~~a~~~g~~~-------~~~~wi~~~ 257 (940)
....+++..++.|+.. .+..++++.
T Consensus 89 ~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 89 NTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred CHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 4446666666666432 244566655
No 406
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=22.57 E-value=12 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=13.0
Q ss_pred CceeehhhhhhHhhccc
Q 002301 624 QVVTIFWFSFSTMFFAH 640 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~ 640 (940)
.+..++||+|+.++..+
T Consensus 8 ~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 8 TLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehhhhHHHhhHhheecc
Confidence 45678999999987543
No 407
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=22.44 E-value=3.6e+02 Score=25.81 Aligned_cols=88 Identities=9% Similarity=0.027 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCC-eEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHH-HHHHHHhcCCCeEEEEEe
Q 002301 152 MAAIAEIVDHYGW-REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEIT-DLLVKVALTESRIIVVHT 229 (940)
Q Consensus 152 ~~ai~~~l~~~~w-~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-~~l~~l~~~~~~viv~~~ 229 (940)
.+++.+-.+.-.. -+|++|.+|..-. ...+.+++.|+.+.....-.. .+..++. ..+..+++.++|+||+.+
T Consensus 16 l~ali~~~~~~~l~~eI~~Visn~~~a-----~v~~~A~~~gIp~~~~~~~~~-~~r~~~d~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 16 AEAIIQSQKAGQLPCEVALLITDKPGA-----KVVERVKVHEIPVCALDPKTY-PSKEAYEIEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEESCSSS-----HHHHHHHTTTCCEEECCGGGS-SSHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHcCCCCcEEEEEEECCCCc-----HHHHHHHHcCCCEEEeChhhc-CchhhhHHHHHHHHHhcCCCEEEEeC
Confidence 5666665544333 3777777775421 345667788988754322111 1334443 456778888999999998
Q ss_pred cCCcHHHHHHHHHHcC
Q 002301 230 HYNRGPVVFHVAQYLG 245 (940)
Q Consensus 230 ~~~~~~~~l~~a~~~g 245 (940)
.......-+....+.|
T Consensus 90 y~~Il~~~~l~~~~~~ 105 (211)
T 3p9x_A 90 YMRLVGPTLLGAYEGR 105 (211)
T ss_dssp CCSCCCHHHHHHHTTS
T ss_pred chhhcCHHHHhhccCC
Confidence 8766655444444433
No 408
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=22.41 E-value=52 Score=34.47 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=48.8
Q ss_pred cCCceeehhhhhhHhhccccc--c--ccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccc
Q 002301 622 KRQVVTIFWFSFSTMFFAHKE--K--TVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKL 680 (940)
Q Consensus 622 ~~~~~~~~~~~~~~l~~~~~~--~--~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 680 (940)
..++..+|||++.++...|.. . |.+..++++..+-.+.++++.+.-++-+.+-+.-+.-
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 154 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK 154 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 356889999999999977643 3 4578899999999999999999999988888776653
No 409
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=22.24 E-value=5.8e+02 Score=25.27 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=53.6
Q ss_pred eEEEEEEEcCCcchhhHHHHHHH--------HhcC-ceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCc--
Q 002301 165 REVIAIYVDDDHGRNGIAALGDT--------LAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-- 233 (940)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~--------l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~-- 233 (940)
.+|.+-....|.-.-+...+... |+.. |.+|.+--.- .. ...++..+++.++++|.+.+....
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~---vp---~e~iv~aa~e~~~d~VglS~l~t~~~ 194 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQ---VA---NEDFIKKAVELEADVLLVSQTVTQKN 194 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSS---BC---HHHHHHHHHHTTCSEEEEECCCCTTS
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCC---CC---HHHHHHHHHHcCCCEEEEEeecCCcc
Confidence 34544444444444455556655 8889 9998764321 12 345667777789999999975544
Q ss_pred -----HHHHHHHHHHcCCCCCCeEEEecC
Q 002301 234 -----GPVVFHVAQYLGMLGTGYVWIATS 257 (940)
Q Consensus 234 -----~~~~l~~a~~~g~~~~~~~wi~~~ 257 (940)
...+++++++.|+...-.+|++..
T Consensus 195 ~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 195 VHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred chHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 445677777777643344555543
No 410
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=22.18 E-value=6.6e+02 Score=25.91 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=74.6
Q ss_pred EEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CcEEEEcCCCchhH
Q 002301 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTS 109 (940)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~a 109 (940)
-.|+.+|--++ ..-+.+++.|+.++ +|..+.+...++.-.-.+.+.-..+.++. .+.++=++. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~----~ 111 (335)
T 1dxh_A 46 KNIALIFEKTS---TRTRCAFEVAAYDQ-------GANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFK----Q 111 (335)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSC----H
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCC----h
Confidence 46888887665 36789999999986 34445443333322111222222233333 344443442 2
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcC--C--eEEEEEEEcCCcchhhHH
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG--W--REVIAIYVDDDHGRNGIA 182 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~--w--~~v~ii~~d~~~g~~~~~ 182 (940)
..+..+++..+||+|.- .+ +...| .+++++++ +++| . .+|+++. |.. .+...
T Consensus 112 ~~~~~lA~~s~vPVINa-~~-----~~~HP------------tQ~LaDl~Ti~e~~g~~l~gl~va~vG--D~~-~~va~ 170 (335)
T 1dxh_A 112 EIVEELAKFAGVPVFNG-LT-----DEYHP------------TQMLADVLTMREHSDKPLHDISYAYLG--DAR-NNMGN 170 (335)
T ss_dssp HHHHHHHHHSSSCEEEE-EC-----SSCCH------------HHHHHHHHHHHHTCSSCGGGCEEEEES--CCS-SHHHH
T ss_pred hHHHHHHHhCCCCEEcC-CC-----CCCCc------------HHHHHHHHHHHHHcCCCcCCeEEEEec--CCc-cchHH
Confidence 33455667778999973 32 22233 35677763 5677 2 4555543 322 35677
Q ss_pred HHHHHHhcCceeEEEee
Q 002301 183 ALGDTLAAKRCRISFKA 199 (940)
Q Consensus 183 ~l~~~l~~~g~~v~~~~ 199 (940)
.+...+...|.+|....
T Consensus 171 Sl~~~~~~~G~~v~~~~ 187 (335)
T 1dxh_A 171 SLLLIGAKLGMDVRIAA 187 (335)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 77788888898877653
No 411
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.76 E-value=39 Score=32.56 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.7
Q ss_pred cEEEEcCCCchhHHHHHHhhccCCccEEee
Q 002301 97 TVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (940)
Q Consensus 97 v~aiiGp~~s~~a~~va~~~~~~~vP~Is~ 126 (940)
+.+++||..|+-......+++.+++|+||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467899999999888899999999999985
No 412
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=21.68 E-value=99 Score=31.24 Aligned_cols=80 Identities=9% Similarity=-0.059 Sum_probs=53.4
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCc-HHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~-~~~~l~~a 241 (940)
++|+++..+ +.|.......+.+++++.|..+.....-. ..+.......++.+...+.|.||+...... ....++++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 568888754 56778888999999999998877643221 014445566777777778999998754332 23456666
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
. .|+
T Consensus 85 ~-~~i 88 (304)
T 3o1i_D 85 V-GNT 88 (304)
T ss_dssp T-TTS
T ss_pred c-CCC
Confidence 5 553
No 413
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=21.67 E-value=1.6e+02 Score=29.32 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=45.9
Q ss_pred CeEEEEEEEc-CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC
Q 002301 164 WREVIAIYVD-DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (940)
Q Consensus 164 w~~v~ii~~d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~ 231 (940)
=+.|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+...+.|.||+....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 8 SNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASS-E--ENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEEC-T--TCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 3568888764 557778889999999999988765321 1 233444567777777889998887543
No 414
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=21.58 E-value=24 Score=35.79 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=44.7
Q ss_pred CceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeee
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 676 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt 676 (940)
++.+++||++.++..-| .-.|.+..+|++.+++.++++.+...+.+++...+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998776 447999999999999999999998888887765443
No 415
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=21.27 E-value=1.6e+02 Score=29.63 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=36.2
Q ss_pred CCCEEEEEEecCC------CCHHHHH----HHHHHHHhcCcEEEEcCCCchhHHHHHHhhccC-CccEEe
Q 002301 67 GGTKLKLQMQDCN------HSGFLAL----AEALHLMEGQTVAIIGPQDAVTSHVVSHVANEL-QVPLLS 125 (940)
Q Consensus 67 ~g~~l~~~~~D~~------~~~~~a~----~~a~~li~~~v~aiiGp~~s~~a~~va~~~~~~-~vP~Is 125 (940)
|+..+.+ +.|+. .+..... +.+..|.+.++.+|+-+-++..+.++..+-+.+ ++|+|.
T Consensus 31 p~~~~iy-~~D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 31 PNEDIIY-FGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp TTCCEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCcEEE-ecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 6666665 44552 2333333 334445556999998765555555666777777 899997
No 416
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=20.49 E-value=2.3e+02 Score=25.83 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=47.6
Q ss_pred CeEEEEEEEcCCc--ch---hhHHHHHHHHhcC-----ceeEEEeecCCCCCChhHHHHHHHHHhc-CCCeEEEEEecC-
Q 002301 164 WREVIAIYVDDDH--GR---NGIAALGDTLAAK-----RCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHY- 231 (940)
Q Consensus 164 w~~v~ii~~d~~~--g~---~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viv~~~~~- 231 (940)
--+|++|...|+- |+ .....+.+.+++. |+++.....++ .+.+.+...+++..+ .++|+||..+..
T Consensus 5 ~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG~g 82 (167)
T 1uuy_A 5 EYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVP--DEVERIKDILQKWSDVDEMDLILTLGGTG 82 (167)
T ss_dssp SEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3467777754431 11 1123455666666 88888777777 677788888888764 578999988543
Q ss_pred ----CcHHHHHHHH
Q 002301 232 ----NRGPVVFHVA 241 (940)
Q Consensus 232 ----~~~~~~l~~a 241 (940)
+...+.+.++
T Consensus 83 ~g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 83 FTPRDVTPEATKKV 96 (167)
T ss_dssp SSTTCCHHHHHHHH
T ss_pred CCCCCchHHHHHHH
Confidence 3444455444
No 417
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=20.32 E-value=1.9e+02 Score=31.68 Aligned_cols=145 Identities=9% Similarity=0.010 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHhcCcEEEE--cCCCc--h-----hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHH
Q 002301 80 HSGFLALAEALHLMEGQTVAII--GPQDA--V-----TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQY 150 (940)
Q Consensus 80 ~~~~~a~~~a~~li~~~v~aii--Gp~~s--~-----~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~ 150 (940)
-.+..+...+.++++.++.+++ -...+ . ....+...+++.++.+|.+.+. .+-......-....|..
T Consensus 72 vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~--Gv~~~~~~~~~~~~~~~-- 147 (457)
T 2csu_A 72 VPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCV--GIMNTHVDLNATFITVA-- 147 (457)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCC--EEEEGGGTEEEESSCCC--
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcc--eEEccCCCceeeecCCC--
Confidence 3566667777778777766443 22221 1 2556778889999999975442 22110000111112221
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc-CCCeEEEEEe
Q 002301 151 QMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHT 229 (940)
Q Consensus 151 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viv~~~ 229 (940)
.. -+|++|.+... ....+.+.+.+.|+-++....+-.. .+.++.+.|..+.+ .++++|+++.
T Consensus 148 ----------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~-~~~~~~d~l~~~~~D~~t~~I~l~~ 210 (457)
T 2csu_A 148 ----------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM-ADVDFAELMEYLADTEEDKAIALYI 210 (457)
T ss_dssp ----------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC-CSSCHHHHHHHHTTCSSCCEEEEEE
T ss_pred ----------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc-CCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 11 56888875543 3445566777788776665555433 24567777877754 6899999999
Q ss_pred cC-CcHHHHHHHHHHcC
Q 002301 230 HY-NRGPVVFHVAQYLG 245 (940)
Q Consensus 230 ~~-~~~~~~l~~a~~~g 245 (940)
.. .+...+++.|++..
T Consensus 211 E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 211 EGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp SCCSCHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHhc
Confidence 98 77999999998864
No 418
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=20.32 E-value=1.7e+02 Score=29.62 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCeEEE--eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEech---------hhHHHHHhcCCcEE
Q 002301 695 YPIGYQ--VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDR---------AYAELFLSTRCEFS 763 (940)
Q Consensus 695 ~~i~~~--~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~---------~~~~~~~~~~~~l~ 763 (940)
.+|+++ .|+|.+....+.. .++++.+.++.++++++ |++|..+... ..++.+.+ .++.
T Consensus 7 ~~iaylGp~Gtfs~~Aa~~~f-----~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~ 75 (283)
T 2qmx_A 7 WLIAYQGEPGAYSEIAALRFG-----EPLPCESFDDVFSAVTE----QKADYAVIPIENSLGGSIHQNYDLLLR--RPVV 75 (283)
T ss_dssp CEEEEESCTTSHHHHHHHHHS-----EEEEESCHHHHHHHHHT----TSCSEEEEEEEESSSCBCHHHHHHHHH--SSEE
T ss_pred cEEEEECCCCCHHHHHHHHHh-----HhCcCCCHHHHHHHHHC----CCCCEEEEeehhcCCCccHHHHHHhhc--CCcE
Confidence 458886 6888877664433 57889999999999999 6665444332 24455554 4799
Q ss_pred EeCCccccCcceeecCCCCc
Q 002301 764 IVGQVFTKNGWGFAFPRDSP 783 (940)
Q Consensus 764 ~~~~~~~~~~~~~~~~k~sp 783 (940)
++++.+.+...++...+|..
T Consensus 76 I~gE~~l~I~h~Ll~~~g~~ 95 (283)
T 2qmx_A 76 ILAETFVKVEHCLLGLPGAS 95 (283)
T ss_dssp EEEEEEEECCCEEEECSSCC
T ss_pred EEEEEEEeeeeeEecCCCCC
Confidence 99999988888888877754
Done!