Query 002301
Match_columns 940
No_of_seqs 494 out of 3915
Neff 9.6
Searched_HMMs 13730
Date Mon Mar 25 20:48:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002301.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002301hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ewka_ c.93.1.1 (A:) Metabotr 100.0 1.9E-48 1.4E-52 448.1 39.8 378 28-425 6-472 (477)
2 d1dp4a_ c.93.1.1 (A:) Hormone 100.0 1.4E-45 1E-49 419.0 37.6 389 31-462 2-423 (425)
3 d1jdpa_ c.93.1.1 (A:) Hormone 100.0 2.7E-42 2E-46 388.3 35.2 368 28-422 4-395 (401)
4 d1usga_ c.93.1.1 (A:) Leucine- 100.0 3.6E-38 2.6E-42 347.1 27.6 337 30-412 1-343 (346)
5 d1qo0a_ c.93.1.1 (A:) Amide re 100.0 1.4E-35 1E-39 329.4 31.3 340 31-414 2-348 (373)
6 d2a5sa1 c.94.1.1 (A:7-142,A:14 99.9 1.6E-27 1.2E-31 251.6 12.2 221 488-815 49-277 (277)
7 d1pb7a_ c.94.1.1 (A:) N-methyl 99.9 2.7E-26 2E-30 244.2 15.2 238 466-816 36-289 (289)
8 d3ckma1 c.93.1.1 (A:257-573) Y 99.9 8.1E-26 5.9E-30 244.2 18.2 309 33-414 2-317 (317)
9 d1wdna_ c.94.1.1 (A:) Glutamin 99.9 5.9E-24 4.3E-28 216.7 16.0 216 469-810 1-219 (223)
10 d1ii5a_ c.94.1.1 (A:) Glutamat 99.9 2.4E-23 1.7E-27 212.6 16.7 218 467-810 3-226 (226)
11 d1mqia_ c.94.1.1 (A:) Glutamat 99.9 4.4E-23 3.2E-27 215.6 16.2 235 468-815 2-260 (260)
12 d1xt8a1 c.94.1.1 (A:10-257) Pu 99.9 2.8E-22 2.1E-26 207.2 15.3 219 468-810 11-232 (248)
13 d1lsta_ c.94.1.1 (A:) Lysine-, 99.9 1E-21 7.4E-26 202.1 15.7 221 468-811 4-233 (238)
14 d2f34a1 c.94.1.1 (A:5-116,A:11 99.8 3E-21 2.2E-25 199.5 10.9 226 469-810 1-246 (246)
15 d2fvya1 c.93.1.1 (A:2-306) Gal 97.8 0.00059 4.3E-08 69.9 20.8 208 31-246 1-226 (305)
16 d2ozza1 c.94.1.1 (A:1-228) Hyp 97.7 5.6E-06 4.1E-10 81.7 3.5 118 682-810 99-221 (228)
17 d1jx6a_ c.93.1.1 (A:) Quorum-s 97.7 0.00066 4.8E-08 70.9 20.4 212 27-247 36-256 (338)
18 d1jyea_ c.93.1.1 (A:) Lac-repr 97.7 0.00051 3.7E-08 69.2 17.6 200 33-252 2-207 (271)
19 d8abpa_ c.93.1.1 (A:) L-arabin 97.6 0.0032 2.3E-07 64.2 22.9 215 31-258 1-232 (305)
20 d1dbqa_ c.93.1.1 (A:) Purine r 97.5 0.0026 1.9E-07 64.0 19.4 206 33-255 2-213 (282)
21 d2nzug1 c.93.1.1 (G:58-332) Gl 97.2 0.0027 2E-07 63.7 16.3 205 33-255 5-215 (275)
22 d2dria_ c.93.1.1 (A:) D-ribose 97.1 0.011 8.3E-07 58.6 19.0 196 33-246 3-206 (271)
23 d1byka_ c.93.1.1 (A:) Trehalos 97.0 0.0078 5.7E-07 59.4 16.7 189 33-246 4-196 (255)
24 d1guda_ c.93.1.1 (A:) D-allose 97.0 0.022 1.6E-06 57.0 20.3 214 33-258 3-228 (288)
25 d1tjya_ c.93.1.1 (A:) AI-2 rec 96.2 0.18 1.3E-05 50.6 21.2 201 31-246 3-213 (316)
26 d1al3a_ c.94.1.1 (A:) Cofactor 95.8 0.048 3.5E-06 52.7 13.7 196 468-798 6-207 (237)
27 d1r3jc_ f.14.1.1 (C:) Potassiu 95.7 0.0016 1.2E-07 54.1 1.9 75 600-678 20-96 (103)
28 d2fyia1 c.94.1.1 (A:88-307) Ly 94.2 0.32 2.3E-05 45.6 14.5 204 468-806 6-215 (220)
29 d1xl4a2 f.14.1.1 (A:23-138) In 91.3 0.071 5.2E-06 44.8 4.0 60 617-676 53-114 (116)
30 d1i6aa_ c.94.1.1 (A:) Hydrogen 88.0 0.31 2.2E-05 45.2 6.2 83 468-575 5-87 (212)
31 d1us5a_ c.94.1.1 (A:) Putative 87.7 0.53 3.8E-05 46.7 8.1 61 682-748 105-171 (298)
32 d1p7ba2 f.14.1.1 (A:36-151) In 87.4 0.25 1.8E-05 41.3 4.4 58 616-673 53-112 (116)
33 d2esna2 c.94.1.1 (A:92-303) Pr 86.4 4.8 0.00035 36.3 14.0 57 467-544 7-63 (212)
34 d1vlja_ e.22.1.2 (A:) NADH-dep 84.9 0.8 5.9E-05 47.5 8.0 79 153-231 23-102 (398)
35 d1xs5a_ c.94.1.1 (A:) Putative 81.6 2.1 0.00015 40.5 9.0 40 497-544 18-57 (240)
36 d1utha_ c.94.1.1 (A:) LysR-typ 80.5 5.2 0.00038 36.4 11.4 85 466-575 10-94 (219)
37 d1rrma_ e.22.1.2 (A:) Lactalde 80.2 0.92 6.7E-05 46.8 6.1 87 153-239 19-107 (385)
38 d1lnqa2 f.14.1.1 (A:19-98) Pot 77.9 0.31 2.3E-05 37.4 1.0 51 624-674 27-79 (80)
39 d1o2da_ e.22.1.2 (A:) Alcohol 75.2 2.8 0.0002 42.4 8.0 84 154-238 19-105 (359)
40 d1ixca2 c.94.1.1 (A:90-294) Ly 71.2 30 0.0022 29.8 14.4 57 469-546 3-59 (205)
41 d2qy9a2 c.37.1.10 (A:285-495) 68.7 12 0.00091 33.9 10.1 66 158-231 32-101 (211)
42 d1tjya_ c.93.1.1 (A:) AI-2 rec 68.3 4.3 0.00031 39.5 7.5 80 165-246 4-86 (316)
43 d2dria_ c.93.1.1 (A:) D-ribose 67.9 6.1 0.00044 37.4 8.4 79 165-246 2-83 (271)
44 d1dbqa_ c.93.1.1 (A:) Purine r 63.6 8.5 0.00062 36.6 8.5 78 165-245 1-80 (282)
45 d1guda_ c.93.1.1 (A:) D-allose 62.1 8.7 0.00064 36.7 8.3 80 166-246 3-85 (288)
46 d1jq5a_ e.22.1.2 (A:) Glycerol 61.9 5.3 0.00039 40.3 6.7 76 153-231 20-95 (366)
47 d1jyea_ c.93.1.1 (A:) Lac-repr 55.8 13 0.00091 35.3 8.1 78 167-246 3-82 (271)
48 d2pjua1 c.92.3.1 (A:11-196) Pr 55.2 65 0.0048 28.1 13.4 127 81-247 35-162 (186)
49 d1h3da1 c.94.1.1 (A:5-224) ATP 54.4 25 0.0018 32.0 9.3 87 683-782 111-197 (220)
50 d8abpa_ c.93.1.1 (A:) L-arabin 51.6 16 0.0012 34.9 8.3 77 166-246 3-82 (305)
51 d2h8pc1 f.14.1.1 (C:22-78) Pot 51.4 8.8 0.00064 26.6 4.2 41 594-638 14-54 (57)
52 d1vmea1 c.23.5.1 (A:251-398) R 49.9 33 0.0024 28.6 9.1 89 165-257 4-99 (148)
53 d1y5ea1 c.57.1.1 (A:12-166) Mo 48.8 30 0.0022 29.3 8.6 64 166-231 4-71 (155)
54 d1q6za1 c.31.1.3 (A:182-341) B 48.7 11 0.00083 32.3 5.8 64 84-147 7-74 (160)
55 d1ozha1 c.31.1.3 (A:188-366) C 48.3 12 0.00088 33.0 6.0 64 83-146 7-74 (179)
56 d2ihta1 c.31.1.3 (A:198-374) C 48.3 7 0.00051 34.5 4.3 63 83-146 6-72 (177)
57 d1p99a_ c.94.1.1 (A:) Putative 47.6 15 0.0011 34.4 6.9 40 497-544 14-53 (255)
58 d1zpda1 c.31.1.3 (A:188-362) P 47.5 13 0.00096 32.6 6.0 60 84-144 10-73 (175)
59 d2fvya1 c.93.1.1 (A:2-306) Gal 47.1 24 0.0017 33.5 8.7 79 165-246 2-84 (305)
60 d1ybha1 c.31.1.3 (A:281-459) A 46.6 14 0.001 32.5 6.1 61 84-145 7-69 (179)
61 d1pvda1 c.31.1.3 (A:182-360) P 45.4 11 0.0008 33.3 5.1 60 84-144 18-81 (179)
62 d2nxoa1 c.94.1.1 (A:5-281) Hyp 42.4 3.5 0.00025 39.8 1.1 31 508-545 24-54 (277)
63 d1twya_ c.94.1.1 (A:) ABC tran 42.4 13 0.00097 34.6 5.6 71 497-576 16-87 (249)
64 d1nh8a1 c.94.1.1 (A:1-210) ATP 42.3 26 0.0019 31.5 7.2 82 687-780 104-185 (210)
65 d1krwa_ c.23.1.1 (A:) NTRC rec 41.7 39 0.0029 27.1 7.9 67 168-246 6-74 (123)
66 d1dbwa_ c.23.1.1 (A:) Transcri 41.5 65 0.0047 25.7 9.3 59 179-246 14-74 (123)
67 d2djia1 c.31.1.3 (A:187-363) P 40.7 12 0.00087 32.9 4.6 60 84-144 9-70 (177)
68 d2ez9a1 c.31.1.3 (A:183-365) P 40.1 12 0.00088 33.2 4.5 61 84-145 18-80 (183)
69 d1jx6a_ c.93.1.1 (A:) Quorum-s 40.1 38 0.0028 32.8 9.1 79 165-243 41-123 (338)
70 d1ovma1 c.31.1.3 (A:181-341) I 39.5 11 0.0008 32.6 4.0 60 84-144 17-80 (161)
71 d1zesa1 c.23.1.1 (A:3-123) Pho 38.8 65 0.0047 25.6 8.8 60 179-247 11-72 (121)
72 d1ycga1 c.23.5.1 (A:251-399) N 37.5 1E+02 0.0074 25.2 10.6 76 164-247 2-85 (149)
73 d1atga_ c.94.1.1 (A:) Molybdat 36.6 1.1E+02 0.008 26.6 11.4 85 719-808 139-225 (231)
74 d1t9ba1 c.31.1.3 (A:290-460) A 36.4 25 0.0018 30.4 6.0 57 88-145 2-63 (171)
75 d1ys7a2 c.23.1.1 (A:7-127) Tra 36.3 89 0.0065 24.7 9.3 60 179-247 12-73 (121)
76 d1e5da1 c.23.5.1 (A:251-402) R 36.2 99 0.0072 25.4 10.1 76 165-247 3-85 (152)
77 d1qkka_ c.23.1.1 (A:) Transcri 35.7 61 0.0045 26.6 8.4 59 179-246 11-71 (140)
78 d1byka_ c.93.1.1 (A:) Trehalos 35.4 32 0.0024 31.7 7.2 66 165-233 3-70 (255)
79 d1mkza_ c.57.1.1 (A:) MoaB {Es 35.2 72 0.0052 27.3 9.0 69 161-231 5-77 (170)
80 d1ckea_ c.37.1.1 (A:) CMP kina 35.1 7.4 0.00054 35.5 2.2 32 96-127 4-35 (225)
81 d1u0sy_ c.23.1.1 (Y:) CheY pro 35.0 88 0.0064 24.6 9.0 60 179-246 12-73 (118)
82 d1mb3a_ c.23.1.1 (A:) Cell div 34.9 74 0.0054 25.2 8.6 69 165-246 2-72 (123)
83 d1ytla1 c.31.1.6 (A:17-174) Ac 33.1 23 0.0017 30.3 5.0 42 86-127 9-52 (158)
84 d2qmwa1 c.94.1.1 (A:1-184) Pre 33.0 38 0.0028 29.7 6.6 82 696-783 2-94 (184)
85 d1w25a1 c.23.1.1 (A:2-140) Res 32.9 82 0.006 25.6 8.8 65 169-245 5-71 (139)
86 d1kgsa2 c.23.1.1 (A:2-123) Pho 32.5 1.1E+02 0.0079 24.1 9.3 59 179-246 12-72 (122)
87 d2ayxa1 c.23.1.1 (A:817-949) S 32.4 1.2E+02 0.0085 24.4 9.6 67 169-247 12-80 (133)
88 d3adka_ c.37.1.1 (A:) Adenylat 32.2 14 0.001 32.9 3.6 35 92-126 5-39 (194)
89 d2nzug1 c.93.1.1 (G:58-332) Gl 32.0 60 0.0044 29.9 8.7 85 165-256 4-90 (275)
90 d1uuya_ c.57.1.1 (A:) Plant CN 31.5 76 0.0056 26.8 8.3 63 166-230 5-78 (161)
91 d2pl1a1 c.23.1.1 (A:1-119) Pho 31.2 1.1E+02 0.0078 24.1 8.9 66 169-246 4-71 (119)
92 d2fr1a1 c.2.1.2 (A:1657-1915) 27.5 1.1E+02 0.008 27.8 9.6 72 147-221 17-88 (259)
93 d1ny5a1 c.23.1.1 (A:1-137) Tra 27.3 89 0.0065 25.3 7.9 59 179-246 11-71 (137)
94 d2ji7a1 c.31.1.3 (A:195-369) O 26.7 22 0.0016 31.0 3.8 43 84-126 7-53 (175)
95 d1mvoa_ c.23.1.1 (A:) PhoP rec 26.1 1.4E+02 0.01 23.3 8.9 66 169-246 6-73 (121)
96 d1jbea_ c.23.1.1 (A:) CheY pro 26.0 1.5E+02 0.011 23.5 9.2 58 180-245 16-75 (128)
97 d1ukza_ c.37.1.1 (A:) Uridylat 25.7 17 0.0012 32.3 2.9 31 96-126 9-39 (196)
98 d2ftsa3 c.57.1.2 (A:499-653) G 23.9 1E+02 0.0073 25.7 7.7 60 181-243 29-89 (155)
99 d1ccwa_ c.23.6.1 (A:) Glutamat 22.8 92 0.0067 25.5 6.9 76 165-246 4-83 (137)
100 d1peya_ c.23.1.1 (A:) Sporulat 22.4 93 0.0068 24.5 6.8 58 179-245 12-71 (119)
101 d1qf9a_ c.37.1.1 (A:) UMP/CMP 22.3 17 0.0012 32.2 2.1 31 96-126 7-37 (194)
102 d2g2ca1 c.57.1.1 (A:1-163) Put 22.2 36 0.0026 29.1 4.3 48 181-230 28-75 (163)
103 d1zhva2 d.58.18.8 (A:62-127) H 22.1 41 0.003 23.8 3.7 62 163-224 1-65 (66)
104 d1bf6a_ c.1.9.3 (A:) Phosphotr 21.8 2.6E+02 0.019 25.5 11.4 156 85-246 35-203 (291)
105 d1r9la_ c.94.1.1 (A:) Glycine 21.7 38 0.0028 32.3 4.9 61 463-544 3-63 (309)
106 d7reqa2 c.23.6.1 (A:561-728) M 21.6 1E+02 0.0076 26.2 7.2 76 165-246 38-117 (168)
107 d1zh2a1 c.23.1.1 (A:2-120) Tra 21.5 80 0.0058 24.9 6.2 64 169-244 4-69 (119)
108 d1p5dx1 c.84.1.1 (X:9-154) Pho 21.3 2E+02 0.015 23.4 10.0 51 151-201 27-77 (146)
109 d1s8na_ c.23.1.1 (A:) Probable 21.2 1.7E+02 0.013 24.9 9.2 75 169-257 7-83 (190)
110 d1f4pa_ c.23.5.1 (A:) Flavodox 21.1 52 0.0038 27.3 5.1 33 166-198 2-35 (147)
111 d1q3ta_ c.37.1.1 (A:) CMP kina 20.8 18 0.0013 32.7 2.1 32 97-128 5-36 (223)
112 d1fuka_ c.37.1.19 (A:) Initiat 20.8 2.1E+02 0.015 23.6 9.4 76 145-227 8-83 (162)
113 d2bona1 e.52.1.2 (A:5-299) Lip 20.6 92 0.0067 29.2 7.6 73 169-245 5-77 (295)
114 d1p6qa_ c.23.1.1 (A:) CheY pro 20.1 1.4E+02 0.01 23.7 7.6 59 179-245 17-77 (129)
115 d1uz5a3 c.57.1.2 (A:181-328) M 20.1 1.3E+02 0.0092 24.9 7.4 48 181-231 29-76 (148)
No 1
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=1.9e-48 Score=448.05 Aligned_cols=378 Identities=21% Similarity=0.345 Sum_probs=312.4
Q ss_pred CCceEEEEEEeecCC-----------------cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 002301 28 RPSVVNIGALLSFST-----------------NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEAL 90 (940)
Q Consensus 28 ~~~~i~IG~l~~~~~-----------------~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~ 90 (940)
-+|+|.||++||++. ..|.....||.+|||+||+++.+|||++|++.++|+|+++..|++.+.
T Consensus 6 ~~Gd~~iGGlFp~h~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dtc~~~~~a~~~~~ 85 (477)
T d1ewka_ 6 MDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSI 85 (477)
T ss_dssp ECCSEEEEEEECSBCCCCTTTGGGTCCCCBCTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHH
T ss_pred cCCCEEEEEEEECcCcCCCCCCCccccccccccccHHHHHHHHHHHHHHhCCCCcCCCCEEEEEEEEcCCChHHHHHHHH
Confidence 468999999999961 125566789999999999999999999999999999999999999999
Q ss_pred HHHh-----------------------------cCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCc
Q 002301 91 HLME-----------------------------GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPY 140 (940)
Q Consensus 91 ~li~-----------------------------~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~ 140 (940)
+++. ++|.|||||.+|..+.+++.++..++||+|||+++++.|++ .+||+
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~~~yp~ 165 (477)
T d1ewka_ 86 EFIRDSLISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY 165 (477)
T ss_dssp HHHC-----------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTT
T ss_pred HHHHhhhcccccccccccccccCCccccccccccceEEEECCCcchhHHHHHHHhhhccCceeccccCCccccccccCCc
Confidence 9983 25899999999999999999999999999999999999998 68999
Q ss_pred eEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcC
Q 002301 141 FVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT 220 (940)
Q Consensus 141 ~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~ 220 (940)
||||.|+|..|++|+++++++|||++|++||+|++||+.+.+.|++++.++|+||++...++...+..++...++++++.
T Consensus 166 f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~~~~~~~~~~l~~l~~~ 245 (477)
T d1ewka_ 166 FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRER 245 (477)
T ss_dssp EEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCHHHHHHHHHHHHTT
T ss_pred eEEecccchhhHHHHHHHHHHcCCcEEEEEEecchhHHHHHHHHHHHHHHcCcEEEEEeeccCCCchhhHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999988777888999999999865
Q ss_pred --CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCCCCCCCccccccceeEEEEEecCCChhHHHHH-
Q 002301 221 --ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFI- 297 (940)
Q Consensus 221 --~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~- 297 (940)
++||||+++....+..++++|.++||+++ +.|++++++....... ........|.+++.+..+..+++++|.
T Consensus 246 ~~~~rVIv~~~~~~~~~~ll~~a~~~g~~g~-~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~f~~~~~ 320 (477)
T d1ewka_ 246 LPKARVVVCFCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDDYFL 320 (477)
T ss_dssp TTTCCEEEEECCHHHHHHHHHHHHHHTCCSC-CEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHHHHT
T ss_pred ccCceEEEEecCHHHHHHHHHHHHHcCccCC-ceEEEecccccchhhc----cccccccCcceEeeeccccchhHHHHHH
Confidence 78999999999999999999999999864 6677777665432221 112244677788888888777766543
Q ss_pred --------------HHHHhhccCC---------------CCC----CCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCcc
Q 002301 298 --------------SRWRNLTDAK---------------TPN----GYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (940)
Q Consensus 298 --------------~~~~~~~~~~---------------~~~----~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 344 (940)
+.|++.++.. ... .....+.++.++|||||++|+||++++++.....
T Consensus 321 ~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~ 400 (477)
T d1ewka_ 321 KLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGH 400 (477)
T ss_dssp TCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred hcCcccCCCChHHHHHHHHHhCCCcccccccCccccccccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 4455555310 000 0112345778899999999999999976533211
Q ss_pred cccCCCcccccCCccCCcccccCChHHHHHHHHhccccccce-eEEEccCCCCCCCceEEEEeec---c--ceEEEEEec
Q 002301 345 FSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAG-PARFNSHGDLINPAYEIINVIG---T--GYRRIGYWS 418 (940)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG-~v~Fd~~G~~~~~~~~I~~~~~---~--~~~~VG~w~ 418 (940)
...|+....+ +|++|+++|++++|+|++| ++.||++|++ ...|+|+|++. + ++++||.|+
T Consensus 401 ------------~~~~~~~~~~-~~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~-~~~y~I~n~q~~~~~~~~~~~VG~w~ 466 (477)
T d1ewka_ 401 ------------VGLCDAMKPI-DGRKLLDFLIKSSFVGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHVGTWH 466 (477)
T ss_dssp ------------SSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCCEEEEEEEECSSSCEEEEEEEEEE
T ss_pred ------------CCcccCCCcC-CHHHHHHHHhcCeeECCCCCEEEECCCCCc-cceEEEEEEEECCCCcEEEEEEEEEe
Confidence 2244555555 4999999999999999999 5999999997 58899999973 2 579999998
Q ss_pred CCCCcce
Q 002301 419 NYSGLSV 425 (940)
Q Consensus 419 ~~~gl~~ 425 (940)
+. +|++
T Consensus 467 ~~-~l~i 472 (477)
T d1ewka_ 467 EG-VLNI 472 (477)
T ss_dssp TT-EEEE
T ss_pred CC-Cccc
Confidence 64 3443
No 2
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=1.4e-45 Score=419.00 Aligned_cols=389 Identities=15% Similarity=0.199 Sum_probs=314.0
Q ss_pred eEEEEEEeecCC----cchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC-----CCHHHHHHHHHHHHhc-CcEEE
Q 002301 31 VVNIGALLSFST----NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN-----HSGFLALAEALHLMEG-QTVAI 100 (940)
Q Consensus 31 ~i~IG~l~~~~~----~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~-----~~~~~a~~~a~~li~~-~v~ai 100 (940)
.|+||+++|++. ..|.....|+++|||+||+++++|+|++|+++++|++ |++..++..+.+++.+ +|.||
T Consensus 2 ~i~vg~~lPltg~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~D~~~~~~~~~~~~~~~~a~~~~~~~~V~ai 81 (425)
T d1dp4a_ 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF 81 (425)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred cEEEEEEECCCCcccccchhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEECCCcccccCHHHHHHHHHHHHhcCCCeEE
Confidence 699999999983 2366778899999999999999999999999999997 4788888888888865 99999
Q ss_pred EcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchh
Q 002301 101 IGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRN 179 (940)
Q Consensus 101 iGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~-~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~ 179 (940)
|||.||..+.++++++++++||+|+++++++.+++ ..||+|||+.|++..++.++++++++++|++|++++.+++||..
T Consensus 82 iG~~~S~~~~~v~~~~~~~~ip~is~~st~~~ls~~~~~~~~~r~~p~~~~~~~~~~~~l~~~~~~~vaii~~~d~~g~~ 161 (425)
T d1dp4a_ 82 LGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDD 161 (425)
T ss_dssp ECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSC
T ss_pred ECCCChHHhhhhhhhhHhhCCeEEeeecccccccccccCCccccccccchHHHHHHHHHHHhccCceEEEEEeccccccc
Confidence 99999999999999999999999999999999998 67899999999999999999999999999999999999999985
Q ss_pred hH------HHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEE
Q 002301 180 GI------AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 253 (940)
Q Consensus 180 ~~------~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~w 253 (940)
.. ..+++...+.++++......+ ...+++..+++.++ ..+++|++.+.+.++..++++|+++|+.+++|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~~v~ 238 (425)
T d1dp4a_ 162 RPCFFIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVR-RKGRVIYICSSPDAFRNLMLLALNAGLTGEDYVF 238 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCCTTTCEE
T ss_pred hhhHHHHHHHHHHHHHhcceEEeeeeecC--CchhHHHHHHHHhh-hcceeEEEecchhHHHHHHHHHHHhCCCCCceEE
Confidence 42 233344455577777766665 45667777776666 4578888889999999999999999999999999
Q ss_pred EecCccccccCCCCC------------CCCccccccceeEEEEEecCCChhHHHHHHHHHhhccC--CCCCCCCCCCchh
Q 002301 254 IATSWLSTALDTNSP------------FPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA--KTPNGYIGLNAYG 319 (940)
Q Consensus 254 i~~~~~~~~~~~~~~------------~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~~~ 319 (940)
+.++.+......... .........++++.+.+..+..+.+++|.+.+++.+.. +.......++.++
T Consensus 239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (425)
T d1dp4a_ 239 FHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIP 318 (425)
T ss_dssp EEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGGGHHH
T ss_pred EEecccccccccccccccccceeeccchhhHHHHHHhheeeeccCCCCChHHHHHHHHHHHHhhccCCCCccccccchHH
Confidence 998765432211100 01122346778999999999999998888887665421 1112234567889
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCC
Q 002301 320 FYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINP 399 (940)
Q Consensus 320 ~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~ 399 (940)
.++||||+++|+|+++++++++.. .++.+|+++|++++|+|++|++.||+||+| .+
T Consensus 319 ~~~yDav~~~a~Al~~~~~~~~~~-----------------------~~~~~l~~~l~~~~f~G~tG~v~fd~nGdr-~~ 374 (425)
T d1dp4a_ 319 ASFHDGLLLYVQAVTETLAQGGTV-----------------------TDGENITQRMWNRSFQGVTGYLKIDRNGDR-DT 374 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT-----------------------TCHHHHHHTTTTEEEEETTEEEEECTTSBB-CC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC-----------------------CCHHHHHHHHhCCeEecCCeeEEECCCCCc-cc
Confidence 999999999999999998775532 268999999999999999999999999997 58
Q ss_pred ceEEEEee--ccceEEEEEecCCCCcceecCccccCCCCCCCCCccccceeecCCCcccCCCcee
Q 002301 400 AYEIINVI--GTGYRRIGYWSNYSGLSVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRGWV 462 (940)
Q Consensus 400 ~~~I~~~~--~~~~~~VG~w~~~~gl~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~ 462 (940)
.|.|++++ ++.++.||.|++.++-... ..-..|+|||++.++.++-|
T Consensus 375 ~y~i~~~~~~~~~~~~vg~~~~~~~~~~~----------------~~~~~i~W~~~~~P~d~p~c 423 (425)
T d1dp4a_ 375 DFSLWDMDPETGAFRVVLNYNGTSQELMA----------------VSEHKLYWPLGYPPPDVPKC 423 (425)
T ss_dssp CEEEEEECTTTCCEEEEEEECTTTCCEEE----------------STTCCCCCTTSSCCCSSCTT
T ss_pred ceEEEEEECCCCeEEEEEEEECCCCeEEe----------------cCCceeECCCCCCCCCCCCC
Confidence 89999997 5679999999877542111 11246899999865555555
No 3
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.7e-42 Score=388.32 Aligned_cols=368 Identities=15% Similarity=0.206 Sum_probs=299.4
Q ss_pred CCceEEEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCC----CCCCEEEEEEecCCCCHHHHHHHHHHHHh---cCc
Q 002301 28 RPSVVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTT----LGGTKLKLQMQDCNHSGFLALAEALHLME---GQT 97 (940)
Q Consensus 28 ~~~~i~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~i----L~g~~l~~~~~D~~~~~~~a~~~a~~li~---~~v 97 (940)
.++.|+||+++|++ +..|.....|+++|+|+||+++++ ++|++|++++.|++|++..+...+.++.. ++|
T Consensus 4 ~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~~~v 83 (401)
T d1jdpa_ 4 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKP 83 (401)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTCCC
T ss_pred CCCccEEEEEECCCCchhhhhHHHHHHHHHHHHHHHhcCCccccCCCCcEEEEEEEeCCCCHHHHHHHHHHHHHhccCCc
Confidence 46799999999998 456788899999999999999875 56899999999999999999988888864 489
Q ss_pred EEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCC--CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC
Q 002301 98 VAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS--LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD 175 (940)
Q Consensus 98 ~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~--~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~ 175 (940)
.+||||.+|..+.++++++++++||+|+++++++.+++ ..||++||+.|++..+++++++++++++|++|++||.|++
T Consensus 84 ~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~~d~ 163 (401)
T d1jdpa_ 84 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDK 163 (401)
T ss_dssp SEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred EEEECCCCcchhHHHHHHHHhcCCceeeccccccccccccccCCeEEEeccchHHHHHHHHHHHHhcCCcEEEEEEecCc
Confidence 99999999999999999999999999999999998887 4689999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhc---CceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 176 HGRNGIAALGDTLAA---KRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 176 ~g~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
||+.....++...+. .++.+......+ .+..+...+++.+ ...++++++++...++..+++++.+.|+...+|+
T Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~iv~~~~~~~~~~i~~~~~~~g~~~~~~~ 240 (401)
T d1jdpa_ 164 LERNCYFTLEGVHEVFQEEGLHTSIYSFDE--TKDLDLEDIVRNI-QASERVVIMCASSDTIRSIMLVAHRHGMTSGDYA 240 (401)
T ss_dssp SSCHHHHHHHHHHHHHHHHTCEEEEEEECT--TSCCCHHHHHHHH-HHHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCE
T ss_pred ccchHHHHHHHHHHHhccceEEEEeecccc--CchhHHHHHHHhh-ccCceeEEEEechHHHHHHHHHHHHhCCCCCCeE
Confidence 999877655555544 444444443333 2334444455444 4568899999999999999999999999999999
Q ss_pred EEecCccccccCCCCCC------CCccccccceeEEEEEecCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHH
Q 002301 253 WIATSWLSTALDTNSPF------PSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTV 326 (940)
Q Consensus 253 wi~~~~~~~~~~~~~~~------~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv 326 (940)
||.++++.......... .........++..+....+..+..++|.++|++.+...+......++.++.++|||+
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~yDav 320 (401)
T d1jdpa_ 241 FFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAI 320 (401)
T ss_dssp EEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHHH
T ss_pred EEeecccccccccCchhhccccchhHHHHHhhheeeccccCCCChHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHH
Confidence 99988665432211110 011234567888888889999999999999998876544444556788899999999
Q ss_pred HHHHHHHHHHhhcCCCcccccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEe
Q 002301 327 WLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINV 406 (940)
Q Consensus 327 ~~la~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~ 406 (940)
+++|+|++++++.++. +.++.+|.++|++++|+|++|++.||++|++ ...|.++++
T Consensus 321 ~l~a~Al~~~~~~~~~-----------------------~~~~~~l~~~l~~~~f~G~tG~v~fd~~Gdr-~~~~~~~~~ 376 (401)
T d1jdpa_ 321 LLYVLALHEVLRAGYS-----------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFSVIAM 376 (401)
T ss_dssp HHHHHHHHHHHHTTCC-----------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCC-----------------------CCCHHHHHHHHhCCeEEcCceEEEECCCCCc-cCcEEEEEE
Confidence 9999999998766442 2268999999999999999999999999996 578888877
Q ss_pred e---ccceEEEEEecCCCC
Q 002301 407 I---GTGYRRIGYWSNYSG 422 (940)
Q Consensus 407 ~---~~~~~~VG~w~~~~g 422 (940)
+ ++.++.||.|+..+|
T Consensus 377 ~~~~~g~~~~Vg~~~~~~~ 395 (401)
T d1jdpa_ 377 TDVEAGTQEVIGDYFGKEG 395 (401)
T ss_dssp EETTTTEEEEEEEEETTTT
T ss_pred EECCCCEEEEEEEEECCCc
Confidence 5 577999999988776
No 4
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.6e-38 Score=347.09 Aligned_cols=337 Identities=16% Similarity=0.188 Sum_probs=292.4
Q ss_pred ceEEEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCc
Q 002301 30 SVVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (940)
Q Consensus 30 ~~i~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 106 (940)
++|+||+++|++ +.+|.....|+++|+++||+++|++ |++|+++++|++|+|..+.+++.+|+++++++||||.++
T Consensus 1 d~I~IG~~~plsG~~a~~G~~~~~g~~lav~~iN~~ggi~-G~~i~lv~~D~~~~p~~a~~~~~~li~~~~~~vig~~~s 79 (346)
T d1usga_ 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIK-GDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCchHHhHHHHHHHHHHHHHHHHHcCCCC-CcEEEEEEecCCCCHHHHHHHHHHHHhcCCccccCCccC
Confidence 479999999998 5568889999999999999999996 899999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHH-HHHcCCeEEEEEEEcCCcchhhHHHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI-VDHYGWREVIAIYVDDDHGRNGIAALG 185 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~-l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (940)
..+.++++++..+++|+++++++++.+....+|++||+.|++..+...++++ .++++|+++++++.+++||+...+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~g~~~~~~~~ 159 (346)
T d1usga_ 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred ccchhhhhhhhhccccccccccCChhhhccCccccccccccchhHHHHHHhhhhhccccceeEEecCchhhhHHHHHHHh
Confidence 9999999999999999999999999988878899999999999999999987 567889999999999999999999999
Q ss_pred HHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCC
Q 002301 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (940)
Q Consensus 186 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (940)
+.+++.|++|+....++ ....++..++.++++.++++|++.+.......++++++++|+... ++...+.......
T Consensus 160 ~~~~~~g~~i~~~~~~~--~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~ 234 (346)
T d1usga_ 160 DGLKAANANVVFFDGIT--AGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNASLS 234 (346)
T ss_dssp HHHHHTTCCEEEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCTTHH
T ss_pred hhhhcccceEEEEEecC--ccccchhhHHHHhhccCCCEEEEeccchhhhheeeccccccccce---EEeeeeccCcchh
Confidence 99999999999998888 566789999999999999999999999999999999999998643 4444332211110
Q ss_pred CCCCCCccccccceeEEEEEecC-CChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCcc
Q 002301 266 NSPFPSDVMDDIQGVLTLRTYTP-DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (940)
Q Consensus 266 ~~~~~~~~~~~~~g~l~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 344 (940)
....+..+|.+...++.+ ..+..+.|.+.|++.++ ..++.++..+|||+++++.|++++ +.
T Consensus 235 -----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~a~~~Yda~~~la~Al~~a---gs--- 296 (346)
T d1usga_ 235 -----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK-------DPSGPYVWITYAAVQSLATALERT---GS--- 296 (346)
T ss_dssp -----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC-------CCCCHHHHHHHHHHHHHHHHHHHH---CC---
T ss_pred -----hhhhccccceeeecccCCCcCchhhHHHHHHHHHhC-------CCCCchHHHHHHHHHHHHHHHHHH---CC---
Confidence 233456788877766554 35678899999998876 356788999999999999999985 11
Q ss_pred cccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeec-cceE
Q 002301 345 FSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIG-TGYR 412 (940)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~-~~~~ 412 (940)
.++.+|+++|+++.|+|++|+++||++|++....|.|++|+. +.+.
T Consensus 297 ----------------------~d~~~l~~al~~~~~~g~~G~v~fd~~Gd~~~~~~~v~q~~~dG~~~ 343 (346)
T d1usga_ 297 ----------------------DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSST 343 (346)
T ss_dssp ----------------------CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEE
T ss_pred ----------------------CCHHHHHHHHHhCCCccceEEEEECCCcCcCCCCEEEEEEEcCCeEE
Confidence 158899999999999999999999999998788899999974 4443
No 5
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00 E-value=1.4e-35 Score=329.37 Aligned_cols=340 Identities=13% Similarity=0.093 Sum_probs=284.0
Q ss_pred eEEEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CcEEEEcCCCc
Q 002301 31 VVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQDA 106 (940)
Q Consensus 31 ~i~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~s 106 (940)
+| ||+++|++ +..|...+.|+++|+++||++|||+ |++|+++++|+++++..+++.+.+|+.+ +|.+||||.+|
T Consensus 2 pv-IG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S 79 (373)
T d1qo0a_ 2 PL-IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMS 79 (373)
T ss_dssp CE-EEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSH
T ss_pred CE-EEEEcCCcCchhhhhHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEEcCCCCHHHHHHHHHHHHhhCCceEEEechhh
Confidence 56 99999998 5568899999999999999999996 9999999999999999999999999976 99999999999
Q ss_pred hhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHH
Q 002301 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGD 186 (940)
Q Consensus 107 ~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 186 (940)
..+.++++++++.++|+++.++++. ....|++||+.|++..++.++++++.+.+|++|++++.|+.||+...+.+++
T Consensus 80 ~~~~av~~~~~~~~vp~i~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~ 156 (373)
T d1qo0a_ 80 HTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRH 156 (373)
T ss_dssp HHHHHHHHHHHHHTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhCCcEEecccccc---cccCCceeeeccChHHHHHHHHHHHHhccCceeeeccCCccccHHHHhhhhh
Confidence 9999999999999999997654432 2346899999999999999999999999999999999999999999999999
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCC
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTN 266 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 266 (940)
.+++.|++|+....++...++.|+..++.++++.++++|++.+...+...+++++.+.|.......+...........
T Consensus 157 ~~~~~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-- 234 (373)
T d1qo0a_ 157 LYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVA-- 234 (373)
T ss_dssp HHHTTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCSTTHHHHHHHHHHHHCSSCCCCEEESSCCHHHHT--
T ss_pred hhhcccCceeEEEEccCccccchhHHHHHHHHhhCCCceeeccccchHHHHHHHHHHhcCccccccccccccchHHHh--
Confidence 999999999987766655688999999999999999999999999999999999888887655444444333222221
Q ss_pred CCCCCccccccceeEEEEEecC--CChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCcc
Q 002301 267 SPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (940)
Q Consensus 267 ~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 344 (940)
....+...|+++..++.+ +++..++|+++|+++++. ...++.++..+||+++++++|++++ +.
T Consensus 235 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~aY~a~~~~a~Ai~~a----g~-- 299 (373)
T d1qo0a_ 235 ----KMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE-----NATITAWAEAAYWQTLLLGRAAQAA----GN-- 299 (373)
T ss_dssp ----TSCHHHHTTCEEEESCCTTCCSHHHHHHHHHHHHHSCT-----TCCCCHHHHHHHHHHHHHHHHHHHH----TS--
T ss_pred ----hhhhhhhcCceeecccccccchHHHHHHHHHHHHHcCC-----CCCCChHHHHHHHHHHHHHHHHHHh----CC--
Confidence 122356778888776554 578889999999999863 2234678889999999999999986 11
Q ss_pred cccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeec-cceEEE
Q 002301 345 FSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIG-TGYRRI 414 (940)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~-~~~~~V 414 (940)
.+++.|.++|++++|+|++|+++||++++.......|.+++. +.+..|
T Consensus 300 ----------------------~d~~~i~~aL~~~~~~~~~G~i~f~~~~~~~~~~~~i~q~~~dg~~~vv 348 (373)
T d1qo0a_ 300 ----------------------WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVR 348 (373)
T ss_dssp ----------------------CCHHHHHHHHSSCCEEETTEEEEECTTTSBEEBCCEEEEECTTSCEEEE
T ss_pred ----------------------CCHHHHHHHHhcCceeCCceeEEEcCCCCcccCceEEEEEccCCcEEEE
Confidence 158999999999999999999999976544445555666664 344444
No 6
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]}
Probab=99.94 E-value=1.6e-27 Score=251.55 Aligned_cols=221 Identities=21% Similarity=0.410 Sum_probs=177.8
Q ss_pred CCcceeeeeHHHHHHHHHhCCCccCeEEeeCCC-C-CCCCCHhHHHHHHHcCcccEEeeceeeecCcceeeeeccccccc
Q 002301 488 GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGD-G-HNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIES 565 (940)
Q Consensus 488 ~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~-~-~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~ 565 (940)
..++++|||+||+++|+++|||+++++.++.+. + ..+++|++++.+|.+|++|++++++++|++|.+.++||.||+..
T Consensus 49 ~~~~~~G~~iDl~~~ia~~lg~~~e~~~v~~~~~g~~~~~~w~~~l~~l~~g~~Di~i~~~tit~eR~~~v~Fs~Py~~~ 128 (277)
T d2a5sa1 49 VKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVET 128 (277)
T ss_dssp EEEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEE
T ss_pred cccceeeeHHHHHHHHHHHhCCCEEEEEccCCCcCccCCCCHHHHHhhhhcccEEEEEEccEeehhhhhhhcccCCceec
Confidence 355799999999999999999997777776432 1 26788999999999999999999999999999999999999999
Q ss_pred cEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhcccccccc
Q 002301 566 GLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTV 645 (940)
Q Consensus 566 ~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 645 (940)
+.+++++++....+.+.++.|+
T Consensus 129 ~~~ilv~k~~~~~~~~~~~~~~---------------------------------------------------------- 150 (277)
T d2a5sa1 129 GISVMVSRQVTGLSDKKFQRPH---------------------------------------------------------- 150 (277)
T ss_dssp CEEEEEETCCCSTTSHHHHSGG----------------------------------------------------------
T ss_pred ceEEEEecCcccCChhHhcCcc----------------------------------------------------------
Confidence 9999999876332222222221
Q ss_pred ccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCcc--CcccC
Q 002301 646 SALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDES--RLVPL 723 (940)
Q Consensus 646 s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~--~~~~~ 723 (940)
|+. .+.++|+..++....++.+....... +...+
T Consensus 151 -------------------------------------------~~~-~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (277)
T d2a5sa1 151 -------------------------------------------DYS-PPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQ 186 (277)
T ss_dssp -------------------------------------------GSS-SCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCC
T ss_pred -------------------------------------------ccc-hheeeeccchhhHHHHHHHhhhhhcceEEEecC
Confidence 111 14468888888888888653221111 23446
Q ss_pred CCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC--CcEEEeCC--ccccCcceeecCCCCcchHHHHHHHHhccccc
Q 002301 724 NSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQ--VFTKNGWGFAFPRDSPLAVDISTAILKLSENG 799 (940)
Q Consensus 724 ~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~--~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G 799 (940)
.+.++++++|.+ |++||++.+.+.+.|++++. |++..++. .+...+|+++++||+||++.+|++|.+|.++|
T Consensus 187 ~~~~~~~~~l~~----G~~Da~i~d~~~~~y~~~~~~~~~l~~~~~~~~~~~~~ygia~~k~s~l~~~in~al~~l~~~G 262 (277)
T d2a5sa1 187 RGVEDALVSLKT----GKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDG 262 (277)
T ss_dssp SSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHc----CCcceecccHHHHHHHHhhCCCCcEEEecCCCCcCcceEEEEEeCChHHHHHHHHHHHHHHHCC
Confidence 788999999999 99999999999999988874 77777653 56678899999999999999999999999999
Q ss_pred chHHHHHhhcccCCCC
Q 002301 800 DLQRIHDKWLLRSACS 815 (940)
Q Consensus 800 ~~~~i~~kw~~~~~c~ 815 (940)
.+++|.+|||. +.|+
T Consensus 263 ~~~~L~~KW~~-g~~~ 277 (277)
T d2a5sa1 263 EMEELETLWLT-GICH 277 (277)
T ss_dssp HHHHHHHHHTC-CCCC
T ss_pred HHHHHHhhhcC-CCCC
Confidence 99999999996 7774
No 7
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.93 E-value=2.7e-26 Score=244.17 Aligned_cols=238 Identities=21% Similarity=0.386 Sum_probs=193.2
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCC--------CCCCCCHhHHHHHHHcC
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGD--------GHNNPSCTELVRLITAG 537 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~--------~~~n~~~~~~~~~l~~g 537 (940)
.++.+++++.. .++|+.+.+.++++.||++||+++|+++||++++++.++.+. ...+++|++++.+|.+|
T Consensus 36 ~~~~~~~~~~~--~~pp~~~~~~~~~~~G~~vDl~~~ia~~lg~~~e~~~v~~~~~g~~~~~~~~~~~~w~~~~~~l~~g 113 (289)
T d1pb7a_ 36 VKKVICTGPND--TSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSG 113 (289)
T ss_dssp CCCEEEEEEC----------CEEEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHT
T ss_pred cCceEEeeccC--CCCCccccCCCCceEEEhHHHHHHHHHHhCCcEEEEEccccccccccccccccccChhHhhhhhhhh
Confidence 34678888765 667877766788999999999999999999996666654321 12456899999999999
Q ss_pred cccEEeeceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCC
Q 002301 538 VYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEF 617 (940)
Q Consensus 538 ~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 617 (940)
++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 114 ~~Di~~~~~s~t~eR~~~~~Fs~Py~~~~~~l~vrk~~------------------------------------------ 151 (289)
T d1pb7a_ 114 QADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT------------------------------------------ 151 (289)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC------------------------------------------
T ss_pred heeEEeeccccCHHHHHhcccccccceeeeEEEEECCC------------------------------------------
Confidence 99999999999999999999999999999999998765
Q ss_pred CCCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhh----C
Q 002301 618 RGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRS----S 693 (940)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~----~ 693 (940)
++...+++.. .
T Consensus 152 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 166 (289)
T d1pb7a_ 152 -----------------------------------------------------------------RITGINDPRLRNPSD 166 (289)
T ss_dssp -----------------------------------------------------------------CCCSTTCHHHHSCBT
T ss_pred -----------------------------------------------------------------CcccccchhhcCCce
Confidence 2222222211 1
Q ss_pred CCCeEEEeCchHHHHHHhhhCC----CccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCcc
Q 002301 694 NYPIGYQVNSFARNYLVDELNI----DESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVF 769 (940)
Q Consensus 694 ~~~i~~~~gs~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 769 (940)
+..+|+..++....++++.... +..++..+++.+++++++.. |++||++.+...+.|+.+++|++.++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~~da~i~d~~~~~~~~~~~~~l~~~~~~~ 242 (289)
T d1pb7a_ 167 KFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD----NKLHAFIWDSAVLEFEASQKCDLVTTGELF 242 (289)
T ss_dssp TBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECSSCS
T ss_pred eEEEEEeccHHHHHHHHhhhhhhhccccceEEEcCCHHHHHHHHhC----CCeEEEEehhhHHHHHHhhCCCEEEecccc
Confidence 3457788888888887543221 22456778999999999999 899999999999999999999999999999
Q ss_pred ccCcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcccCCCCC
Q 002301 770 TKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLLRSACSS 816 (940)
Q Consensus 770 ~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~~~~c~~ 816 (940)
...+++++++||+||.+.+|++|.+|+++|.+++|.+|||....|++
T Consensus 243 ~~~~~~~a~~k~~~l~~~in~al~~l~~~G~~~~l~~Kw~~~~~c~~ 289 (289)
T d1pb7a_ 243 FRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 289 (289)
T ss_dssp EEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC
T ss_pred CceeEEEEEcCChHHHHHHHHHHHHHHHCCHHHHHHHhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999974
No 8
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.93 E-value=8.1e-26 Score=244.20 Aligned_cols=309 Identities=13% Similarity=0.072 Sum_probs=232.5
Q ss_pred EEEEEeecC---CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhH
Q 002301 33 NIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (940)
Q Consensus 33 ~IG~l~~~~---~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a 109 (940)
|||+++|+| +..|+..+.|+++|++ |.+++++++|+++++..++ +..+..++|.+||||.+|..+
T Consensus 2 kIG~~lPlSG~~a~~G~~~~~g~~lA~~----------~~~i~l~~~D~~~~~~~aa--~~~l~~~~v~~iiGp~~s~~~ 69 (317)
T d3ckma1 2 QIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQNL 69 (317)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHhcC----------CCCceEEEEcCCCCHHHHH--HHHHHHcCCeEEEEcccccch
Confidence 699999998 4568899999999974 4668999999999997653 455666799999999999877
Q ss_pred HHHHH-hhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHH
Q 002301 110 HVVSH-VANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTL 188 (940)
Q Consensus 110 ~~va~-~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (940)
.+++. ..+...+|+++.++++.. ...|++||+.+++..++.++++++...||++|++++.|++||+...+.+++.+
T Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~la~~~~~~g~k~vail~~~~~~g~~~~~~~~~~~ 146 (317)
T d3ckma1 70 DVILADPAQIQGMDVLALNATPNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (317)
T ss_dssp HHHHHCGGGGTTCEEEESCCCTTC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCceEEeccccccc---ccccceEEeccCCHHHHHHHHhhhhhcccceeEEeccccccchhHHHHHHHHH
Confidence 77554 556667777765444422 34589999999999999999999999999999999999999999999999999
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCccccccCCCCC
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSP 268 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~ 268 (940)
++.|++|+....++. .+.+ ......+..+++++++...+.++..+.+++...|+..+ ++..+.........
T Consensus 147 ~~~G~~v~~~~~~~~--~~~~--~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~-- 217 (317)
T d3ckma1 147 QQLAGTDANIRYYNL--PADV--TYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA---IYASSRASASATNT-- 217 (317)
T ss_dssp HHHHSSCCEEEEESS--TTHH--HHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHT--
T ss_pred HHcCCEEEEEEeccc--cchh--hhhhhhcccCcceEEEecChhHHHHHHHHHHHhccccc---eeeccccccCcccc--
Confidence 999999999888873 3333 34556677889999999999999999999988886543 44433222111100
Q ss_pred CCCccccccceeEEEEEe---cCCChhHHHHHHHHHhhccCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCCccc
Q 002301 269 FPSDVMDDIQGVLTLRTY---TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345 (940)
Q Consensus 269 ~~~~~~~~~~g~l~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 345 (940)
.........|++..... .++.+....|.++|+..++ ...+++++|||+++++++.+..
T Consensus 218 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~gyDa~~l~~~~~~~~--------- 278 (317)
T d3ckma1 218 -NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ---------LMRLYAMGADAWLLINQFNELR--------- 278 (317)
T ss_dssp -CHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH---------HHHHHHHHHHHHHHHHTHHHHH---------
T ss_pred -chhhhhhhcCcEEecccccCCCCCHHHHHHHHHHHhcCC---------CCchHHHHHHHHHHHHHHHHHh---------
Confidence 02334566777766542 3456677777777765543 2346678999988876544321
Q ss_pred ccCCCcccccCCccCCcccccCChHHHHHHHHhccccccceeEEEccCCCCCCCceEEEEeeccceEEE
Q 002301 346 SKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRI 414 (940)
Q Consensus 346 ~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~G~~~~~~~~I~~~~~~~~~~V 414 (940)
.+.+..|+|++|+++||++|+ ....+.+.++++|.+++|
T Consensus 279 -----------------------------~~~~~~~~G~tG~~~fd~~G~-~~r~~~~~~~~~G~~vp~ 317 (317)
T d3ckma1 279 -----------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 317 (317)
T ss_dssp -----------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEEC
T ss_pred -----------------------------ccCCCCeecCeEEEEECCCCC-EeecceEEEEECCEEeEC
Confidence 122335899999999999997 457788999999988764
No 9
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=5.9e-24 Score=216.70 Aligned_cols=216 Identities=23% Similarity=0.383 Sum_probs=191.3
Q ss_pred eEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceee
Q 002301 469 HLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAI 548 (940)
Q Consensus 469 ~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~ 548 (940)
+|+|++.. +|+||.+.+ +|++.||++|+++++++++|++++++..+ |.+++..+.+|++|+++++++.
T Consensus 1 kl~v~~~~--~~pP~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~~~~ 68 (223)
T d1wdna_ 1 KLVVATDT--AFVPFEFKQ-GDLYVGFDVDLWAAIAKELKLDYELKPMD---------FSGIIPALQTKNVDLALAGITI 68 (223)
T ss_dssp CEEEEEES--SBTTTBEEE-TTEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSSSEEEEEEEC
T ss_pred CEEEEeCC--CCCCeEEcc-CCeEEEHHHHHHHHHHHHhCCcEEEEecC---------HHHHHhhhhhccceeeeccccc
Confidence 37788753 789998855 58899999999999999999997766654 9999999999999999999999
Q ss_pred ecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCceee
Q 002301 549 ITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTI 628 (940)
Q Consensus 549 t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (940)
+++|.+.++||.||+..+.++++++..
T Consensus 69 ~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------------- 95 (223)
T d1wdna_ 69 TDERKKAIDFSDGYYKSGLLVMVKANN----------------------------------------------------- 95 (223)
T ss_dssp CHHHHTTSEECSCCEEEEEEEEEETTC-----------------------------------------------------
T ss_pred chhhhcceEecccEEEeeeEEEEECCC-----------------------------------------------------
Confidence 999999999999999999999998765
Q ss_pred hhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHHHH
Q 002301 629 FWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNY 708 (940)
Q Consensus 629 ~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~~~ 708 (940)
+.+++++||. ++++++..|+....+
T Consensus 96 -----------------------------------------------------~~i~~~~dl~--~~~v~v~~g~~~~~~ 120 (223)
T d1wdna_ 96 -----------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSVDY 120 (223)
T ss_dssp -----------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHHHH
T ss_pred -----------------------------------------------------CCCCCHHHHC--CCEEEEEeecchhhh
Confidence 6788899997 888999999988888
Q ss_pred HHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC--CcEEEeCCccccCcceeecCCCCc-ch
Q 002301 709 LVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQVFTKNGWGFAFPRDSP-LA 785 (940)
Q Consensus 709 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~ 785 (940)
+.+. ....++..+.+.++++++|.. |++|+++.+...+.|++++. .++..+++.+...+++++++|++| ++
T Consensus 121 ~~~~--~~~~~~~~~~~~~~~~~~l~~----g~vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~ 194 (223)
T d1wdna_ 121 AKAN--IKTKDLRQFPNIDNAYMELGT----NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELR 194 (223)
T ss_dssp HHHH--CCCSEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHH
T ss_pred hhhh--ccccceeeeCCHHHHHHHHhc----CCccccccccHHhhhhhhhcCCCcceecCCCCCcceEEEEEECCCHHHH
Confidence 8542 334577888999999999999 99999999999999988763 368888888888899999999999 99
Q ss_pred HHHHHHHHhcccccchHHHHHhhcc
Q 002301 786 VDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 786 ~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+.+|++|.++.++|.+++|.+|||+
T Consensus 195 ~~in~~i~~~~~~G~~~~i~~ky~g 219 (223)
T d1wdna_ 195 DKVNGALKTLRENGTYNEIYKKWFG 219 (223)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 9999999999999999999999997
No 10
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}
Probab=99.89 E-value=2.4e-23 Score=212.60 Aligned_cols=218 Identities=20% Similarity=0.314 Sum_probs=185.8
Q ss_pred CceEEEEecCcccccceEEe--CCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 467 GRHLRIGVPNRVSFREFVSV--KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~--~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
++.||||+.. ++||.+. ..++++.|+++||++++++++|+++++... .+|..++.++.+|++|++++
T Consensus 3 a~~lrVg~~~---~pP~~~~~~~~~g~~~G~~~dl~~~ia~~~g~~~~~v~~--------~~~~~~~~~l~~G~~D~~~~ 71 (226)
T d1ii5a_ 3 AMALKVGVVG---NPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVRQ--------NSISAGITAVAEGELDILIG 71 (226)
T ss_dssp SCCEEEEECC---CTTTCEEC-----CEESHHHHHHHHHHHHHTCCEEEEEC--------SCHHHHHHHHHTTSCSEEEE
T ss_pred CCCEEEEEeC---CCCCeEeecCCCCcEEEHHHHHHHHHHHHhCCCeEEEEc--------CCHHHHHHHHhcCCcccccc
Confidence 5789999974 4666662 346899999999999999999998554432 45999999999999999999
Q ss_pred ceeeecCcc--eeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCc
Q 002301 545 DIAIITNRT--KMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPK 622 (940)
Q Consensus 545 ~~~~t~~R~--~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (940)
++++|++|. ..++||.||+....++++++..
T Consensus 72 ~~~~t~~r~~~~~~~fs~p~~~~~~~~~~~~~~----------------------------------------------- 104 (226)
T d1ii5a_ 72 PISVTPERAAIEGITFTQPYFSSGIGLLIPGTA----------------------------------------------- 104 (226)
T ss_dssp EEECCHHHHTSTTEEECCCCEEEEEEEEEEGGG-----------------------------------------------
T ss_pred cccchhhhhhhhcccccccccccCcceEEEecc-----------------------------------------------
Confidence 999999987 4689999999999999998876
Q ss_pred CCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeC
Q 002301 623 RQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVN 702 (940)
Q Consensus 623 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~g 702 (940)
...+++++||. ++++++..|
T Consensus 105 ----------------------------------------------------------~~~~~~~~dl~--~~~i~~~~g 124 (226)
T d1ii5a_ 105 ----------------------------------------------------------TPLFRSVGDLK--NKEVAVVRD 124 (226)
T ss_dssp ----------------------------------------------------------TTTCSSGGGGT--TCEEEEETT
T ss_pred ----------------------------------------------------------cccchhhhhhh--hhccccccC
Confidence 15688999998 888999999
Q ss_pred chHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC--cEEEeCCccccCcceeecCC
Q 002301 703 SFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFAFPR 780 (940)
Q Consensus 703 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k 780 (940)
+....++.. ...+++.+.+.++.+++|.+ |++|+++.+...+.+++++.. ++.+.+..+...+++++++|
T Consensus 125 ~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~----g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (226)
T d1ii5a_ 125 TTAVDWANF----YQADVRETNNLTAAITLLQK----KQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKE 196 (226)
T ss_dssp SHHHHHHHH----TTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEET
T ss_pred chhhhcccc----ccceeeccchHHHHHHHHhC----CCeeeEeccchhHHHHHhhcccccccccCcCCCCceEEEEECC
Confidence 988777742 23568889999999999999 999999999999999998864 57777777777889999999
Q ss_pred CCcchHHHHHHHHhcccccchHHHHHhhcc
Q 002301 781 DSPLAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 781 ~spl~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+.++.+.||++|.+|.++|.+++|.+|||+
T Consensus 197 ~~~l~~~in~~i~~l~~~g~l~~i~~kylG 226 (226)
T d1ii5a_ 197 NSPLQKTINVEMLNLLYSRVIAEFTERWLG 226 (226)
T ss_dssp TCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhCcHHHHHHHhhCc
Confidence 999999999999999999999999999985
No 11
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]}
Probab=99.89 E-value=4.4e-23 Score=215.56 Aligned_cols=235 Identities=20% Similarity=0.382 Sum_probs=184.8
Q ss_pred ceEEEEecCcccccceEEe-------CCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCC-C---CCCCCHhHHHHHHHc
Q 002301 468 RHLRIGVPNRVSFREFVSV-------KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGD-G---HNNPSCTELVRLITA 536 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~-------~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~-~---~~n~~~~~~~~~l~~ 536 (940)
++|+|++.. ++||++. +++++++||++||+++++++||+++++..++.+. + ....+|++++..+.+
T Consensus 2 ~t~~v~t~~---~pPf~~~~~~~~~~~~~~k~~G~~idl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~ 78 (260)
T d1mqia_ 2 KTVVVTTIL---ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVY 78 (260)
T ss_dssp CCEEEEECC---BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHT
T ss_pred eEEEEEEcc---cCCceEEccCccccCCCCCeEEEHHHHHHHHHHHhCCCeEEEecCCCccceeccccccHHHHHHhhhc
Confidence 578999874 4666552 3557899999999999999999996666655221 1 144679999999999
Q ss_pred CcccEEeeceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCC
Q 002301 537 GVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDE 616 (940)
Q Consensus 537 g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 616 (940)
|++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 79 G~~D~~~~~~t~T~eR~~~~~FS~Py~~~~~~~~~~~~~----------------------------------------- 117 (260)
T d1mqia_ 79 GKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT----------------------------------------- 117 (260)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC-----------------------------------------
T ss_pred CcHHHHHhhhcCcHHHHhhCcCCCCeEcccceeeecccc-----------------------------------------
Confidence 999999999999999999999999999999999998754
Q ss_pred CCCCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCC-C
Q 002301 617 FRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSN-Y 695 (940)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~-~ 695 (940)
++++++||.... .
T Consensus 118 ------------------------------------------------------------------~~~~~~dl~~~~~~ 131 (260)
T d1mqia_ 118 ------------------------------------------------------------------PIESAEDLSKQTEI 131 (260)
T ss_dssp ------------------------------------------------------------------SCCSHHHHHTCSSS
T ss_pred ------------------------------------------------------------------chhhhhhhcccccc
Confidence 566788887533 3
Q ss_pred CeEEEeCchHHHHHHhhhCCC----------ccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC-CcEEE
Q 002301 696 PIGYQVNSFARNYLVDELNID----------ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSI 764 (940)
Q Consensus 696 ~i~~~~gs~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~-~~l~~ 764 (940)
.+|...++....++....... ....+...+..+.+..+..+ +..++++.+.....+..+++ +++..
T Consensus 132 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T d1mqia_ 132 AYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMK 208 (260)
T ss_dssp EEECBSSSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHT---TTSEEEEEEHHHHHHHTTSTTCCEEE
T ss_pred eeeEEcchHHHHHHHhccchHHHHHHHHhhccccceeecChHHHHHHHHcC---CCCEEEEecHHHHHHHHhcCCCceEE
Confidence 466677776666654321100 01122345777887777774 56678888888888877765 57888
Q ss_pred eCCccccCcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcc-cCCCC
Q 002301 765 VGQVFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLL-RSACS 815 (940)
Q Consensus 765 ~~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~-~~~c~ 815 (940)
++..+...+++++++|++||++.||++|.+|+++|.+++|.+|||. ...|.
T Consensus 209 ~~~~~~~~~~~~a~~k~s~l~~~in~aL~~l~~~G~~~~l~~KwF~~~~~~~ 260 (260)
T d1mqia_ 209 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 260 (260)
T ss_dssp ESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred ecccCCcceEEEEEcCChHHHHHHHHHHHHHHHCCHHHHHHHHhCCCCCCCC
Confidence 9999989999999999999999999999999999999999999999 77783
No 12
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}
Probab=99.87 E-value=2.8e-22 Score=207.17 Aligned_cols=219 Identities=18% Similarity=0.231 Sum_probs=188.9
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCC-ccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPY-AVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~-~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
..||||+.. +|+||.+.+.+|++.||++||+++++++|+. .+++++.+ -+|.+++..+.+|++|++++++
T Consensus 11 g~l~v~v~~--~~pP~~~~~~~g~~~G~~~Dl~~~ia~~l~~~~~~i~~~~-------~~~~~~~~~l~~g~~d~~~~~~ 81 (248)
T d1xt8a1 11 GVVRIGVFG--DKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVL-------VEAANRVEFLKSNKVDIILANF 81 (248)
T ss_dssp SSEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHHSCTTCEEEEE-------CCGGGHHHHHHTTSCSEECSSC
T ss_pred CEEEEEEcC--CCCCceEECCCCCEeEHHHHHHHHHHHHhcCCCceeeeee-------ecccccccccccCccccccccc
Confidence 579999874 7899988778899999999999999999842 24455555 3499999999999999999999
Q ss_pred eeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCce
Q 002301 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (940)
Q Consensus 547 ~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (940)
.++++|.+.++||.||...+.++++++..
T Consensus 82 ~~t~~R~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 110 (248)
T d1xt8a1 82 TQTPQRAEQVDFCSPYMKVALGVAVPKDS--------------------------------------------------- 110 (248)
T ss_dssp BCCHHHHTTEEECCCCEEEEEEEEEETTC---------------------------------------------------
T ss_pred ccchhhhcceeecccccccceeEEEecCc---------------------------------------------------
Confidence 99999999999999999999999998653
Q ss_pred eehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHH
Q 002301 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (940)
Q Consensus 627 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~ 706 (940)
++++++||. +++||+..|+...
T Consensus 111 --------------------------------------------------------~i~~~~dl~--g~~i~v~~gs~~~ 132 (248)
T d1xt8a1 111 --------------------------------------------------------NITSVEDLK--DKTLLLNKGTTAD 132 (248)
T ss_dssp --------------------------------------------------------CCCSSGGGT--TSEEEEETTSHHH
T ss_pred --------------------------------------------------------ccchhhhhc--cceeeecCCChHH
Confidence 577899997 8899999999999
Q ss_pred HHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEE-eCCccccCcceeecCCCCc-c
Q 002301 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSI-VGQVFTKNGWGFAFPRDSP-L 784 (940)
Q Consensus 707 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~k~sp-l 784 (940)
.++.. ..+..+++.+++.++++++|.+ |++|+++.+...+.++++++.++.+ +.+.+...+++++++|+.| |
T Consensus 133 ~~l~~--~~~~~~i~~~~s~~~~~~~l~~----g~vD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~k~~~~l 206 (248)
T d1xt8a1 133 AYFTQ--NYPNIKTLKYDQNTETFAALMD----KRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKEL 206 (248)
T ss_dssp HHHHH--HCTTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCHHH
T ss_pred Hhhhc--cccccccccccchhhHHHhhcc----cccccccccHHHHHHHHHhCCcceEecccCCCCceEEEEEECCCHHH
Confidence 99865 3455688899999999999999 9999999999988888888776554 4556666788999999999 9
Q ss_pred hHHHHHHHHhcccccchHHHHHhhcc
Q 002301 785 AVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 785 ~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
.+.+|++|.+|.++|.++++.+||+.
T Consensus 207 ~~~in~~l~~i~~~G~~~~i~~k~~~ 232 (248)
T d1xt8a1 207 KEFIDNLIIKLGQEQFFHKAYDETLK 232 (248)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 99999999999999999888887765
No 13
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}
Probab=99.86 E-value=1e-21 Score=202.11 Aligned_cols=221 Identities=18% Similarity=0.274 Sum_probs=187.7
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
++||||+.. +|+||.+.+++|+++||++||++++++++|+++++...+ |...+..+.+|++|+++++++
T Consensus 4 ~tl~v~~~~--~~pP~~~~d~~G~~~G~~~dl~~~ia~~lg~~~~~~~~~---------~~~~~~~l~~g~~d~~~~~~~ 72 (238)
T d1lsta_ 4 QTVRIGTDT--TYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASD---------FDALIPSLKAKKIDAIISSLS 72 (238)
T ss_dssp SEEEEEECS--CBTTTBEECTTCCEESHHHHHHHHHHHHHTCEEEEEECC---------GGGHHHHHHTTSCSEECSSCB
T ss_pred CEEEEEECC--CCCCeeEECCCCCEEEhHHHHHHHHHHHhCCceEEeech---------HHHHHHHHHhcccceeecccc
Confidence 579999853 689999877889999999999999999999997666554 999999999999999999999
Q ss_pred eecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCcee
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (940)
.+++|.+.++|+.||......+++++..
T Consensus 73 ~~~~r~~~~~~s~p~~~~~~~l~~~~~~---------------------------------------------------- 100 (238)
T d1lsta_ 73 ITDKRQQEIAFSDKLYAADSRLIAAKGS---------------------------------------------------- 100 (238)
T ss_dssp CCHHHHHHCEECSCSBCCCEEEEEETTC----------------------------------------------------
T ss_pred hhhhhhhhcccCCCccccCceEEEEecC----------------------------------------------------
Confidence 9999999999999999999999998876
Q ss_pred ehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeEEEeCchHHH
Q 002301 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 707 (940)
Q Consensus 628 ~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~~~~gs~~~~ 707 (940)
..+.+++||. +.++|+..|+....
T Consensus 101 ------------------------------------------------------~~~~~~~dl~--~~~i~v~~g~~~~~ 124 (238)
T d1lsta_ 101 ------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQEA 124 (238)
T ss_dssp ------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHHHH
T ss_pred ------------------------------------------------------cccCCccccC--CCEEEEEecchHHH
Confidence 5678899997 78899999998877
Q ss_pred HHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCC---cEEEeC-----CccccCcceeecC
Q 002301 708 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC---EFSIVG-----QVFTKNGWGFAFP 779 (940)
Q Consensus 708 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~---~l~~~~-----~~~~~~~~~~~~~ 779 (940)
.+.+.......+.+...+.++.++++.. |++|+++.+...+.+.+.+.. ...... ..+...+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~----gr~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 200 (238)
T d1lsta_ 125 YANDNWRTKGVDVVAYANQDLIYSDLTA----GRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLR 200 (238)
T ss_dssp HHHHHTGGGTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEEC
T ss_pred HHHHhhhccccceeeeCCHHHHHHHHhh----hcccEEEecHHHHHHHHHhCccCCceEEEeecccccccccccEEEEEe
Confidence 7755444444566778899999999999 899999998887776665532 344333 2345557889999
Q ss_pred CCCc-chHHHHHHHHhcccccchHHHHHhhccc
Q 002301 780 RDSP-LAVDISTAILKLSENGDLQRIHDKWLLR 811 (940)
Q Consensus 780 k~sp-l~~~~~~~il~l~e~G~~~~i~~kw~~~ 811 (940)
|++| +++.+|++|.+|.++|.+++|.+|||+.
T Consensus 201 k~~~~l~~~in~~l~~~~~~G~~~~I~~kyfg~ 233 (238)
T d1lsta_ 201 KDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (238)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred CCCHHHHHHHHHHHHHHHHCcHHHHHHHHHCCC
Confidence 9998 9999999999999999999999999983
No 14
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]}
Probab=99.83 E-value=3e-21 Score=199.54 Aligned_cols=226 Identities=19% Similarity=0.348 Sum_probs=173.0
Q ss_pred eEEEEecCcccccceEEe-------CCCcceeeeeHHHHHHHHHhCCCccCeEEeeCC---CCCCCCCHhHHHHHHHcCc
Q 002301 469 HLRIGVPNRVSFREFVSV-------KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG---DGHNNPSCTELVRLITAGV 538 (940)
Q Consensus 469 ~l~v~v~~~~~~~~~~~~-------~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~---~~~~n~~~~~~~~~l~~g~ 538 (940)
+|.|++. .++||++. .++++++|||+||+++++++||+++++..+++. .....++|++++..+..|+
T Consensus 1 t~~v~t~---~~~Py~~~~~~~~~~~~n~~~~G~~iDl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 77 (246)
T d2f34a1 1 TLIVTTI---LEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHR 77 (246)
T ss_dssp EEEEEEC---CBTTTBEECSCCSCCCGGGGEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTS
T ss_pred CEEEEec---ccCCCEEEccCCCccCCCCceEEeHHHHHHHHHHHhCCCeEEEeccccccccccccCchhhhhhhhhhcc
Confidence 4677776 45666652 246789999999999999999999777777643 3346788999999999999
Q ss_pred ccEEeeceeeecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCC
Q 002301 539 YDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFR 618 (940)
Q Consensus 539 ~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 618 (940)
+|++++++++|++|.+.++||.||.....++++++..
T Consensus 78 ~D~~i~~~~~t~~R~~~~~fs~P~~~~~~~~~~~~~~------------------------------------------- 114 (246)
T d2f34a1 78 ADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPI------------------------------------------- 114 (246)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETSC-------------------------------------------
T ss_pred ccEEEeccccchhhhhcccccCCchhhheeeeeeccc-------------------------------------------
Confidence 9999999999999999999999999999999988765
Q ss_pred CCCcCCceeehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeE
Q 002301 619 GPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIG 698 (940)
Q Consensus 619 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~ 698 (940)
....+..++. +.++|
T Consensus 115 ---------------------------------------------------------------~~~~~~~~~~--~~~~~ 129 (246)
T d2f34a1 115 ---------------------------------------------------------------DSADDLAKQT--KIEYG 129 (246)
T ss_dssp ---------------------------------------------------------------CSHHHHHTCS--SSEEE
T ss_pred ---------------------------------------------------------------cccchhhhcc--cceeE
Confidence 2222233333 55677
Q ss_pred EEeCchHHHHHHhhhCCCccC----------cccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeCCc
Q 002301 699 YQVNSFARNYLVDELNIDESR----------LVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQV 768 (940)
Q Consensus 699 ~~~gs~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 768 (940)
+..++....++.......... .......+........ ..++++.+.....+..++.+++..+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (246)
T d2f34a1 130 AVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLT-----TDYALLMESTSIEYVTQRNCNLTQIGGL 204 (246)
T ss_dssp CBTTSHHHHHHHHCCCHHHHHHHHHHHHTHHHHSBSSHHHHHHHHHH-----SSEEEEEEHHHHHHHHHHCTTEEEESSC
T ss_pred EEecceeehhhhhcccchhhhhhhhcchhhHHHHhhhhhHHHHHhhc-----cceEEEechHHHHHHHhcCCCeEEeccc
Confidence 777776666554321111000 0112233333333333 3567888888899888899999999999
Q ss_pred cccCcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcc
Q 002301 769 FTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 769 ~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
+...+++++++||++|++.+|++|.+|+++|.+++|.+|||.
T Consensus 205 ~~~~~~~~a~~k~s~l~~~~n~~l~~l~~~G~~~~i~~KwFk 246 (246)
T d2f34a1 205 IDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWR 246 (246)
T ss_dssp SSCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CCCceEEEEEeCChHHHHHHHHHHHHHHHCCHHHHHHHhhCC
Confidence 888999999999999999999999999999999999999984
No 15
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=97.79 E-value=0.00059 Score=69.89 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=131.0
Q ss_pred eEEEEEEeecCCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEE-EcCCCchhH
Q 002301 31 VVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAI-IGPQDAVTS 109 (940)
Q Consensus 31 ~i~IG~l~~~~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~ai-iGp~~s~~a 109 (940)
++|||+++|.-+. ....++..++++.-+.. .|.+ +.+.|+..++..-.+....+++++|.+| +.|..+...
T Consensus 1 ~~kIgv~~~~~~~---~f~~~i~~gi~~~a~~~---~~~~--l~~~~~~~~~~~q~~~i~~li~~~vDgiii~~~~~~~~ 72 (305)
T d2fvya1 1 DTRIGVTIYKYDD---NFMSVVRKAIEQDAKAA---PDVQ--LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 72 (305)
T ss_dssp CEEEEEEESCTTS---HHHHHHHHHHHHHHHTC---TTEE--EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred CcEEEEEeCCCCC---HHHHHHHHHHHHHHHHc---CCcE--EEEEcCCCCHHHHHHHHHHHHHcCCCEEEeeccccccc
Confidence 5899999987421 23344444444432221 2444 4557888899999999999999999986 577777777
Q ss_pred HHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHH------------cCCeEEEEEEEcCCc-
Q 002301 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH------------YGWREVIAIYVDDDH- 176 (940)
Q Consensus 110 ~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~------------~~w~~v~ii~~d~~~- 176 (940)
......+...++|++.+....+......++...-+..+....+..+++++.. .|-++++++..+...
T Consensus 73 ~~~~~~~~~~~ipvv~~~~~~~~~~~~~~~~~~~V~~dn~~~g~~~~~~l~~~~~~~~~~~~~~~g~~~i~~i~g~~~~~ 152 (305)
T d2fvya1 73 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 152 (305)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHhcCCceeeeeecccccccccCCCceEEEeCcHHHHHHHHHHHHHHhhhccccccccCCCceEEEEeCCCccc
Confidence 7777888999999998643322111134456666677777767767666533 266789988855443
Q ss_pred -chhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHh--cCCCeE-EEEEecCCcHHHHHHHHHHcCC
Q 002301 177 -GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA--LTESRI-IVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 177 -g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~--~~~~~v-iv~~~~~~~~~~~l~~a~~~g~ 246 (940)
.....+.+.+.+++.|++......................+. ...++. .+++.....+..+++++++.|.
T Consensus 153 ~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~g~~~a~~~~g~ 226 (305)
T d2fvya1 153 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK 226 (305)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHhhhcCCcccceeEeeccccchhhHHHHHHHHhhccCCCceEEEecchHHhHHHHHHHHHhCC
Confidence 345567899999999887655443332223333333322222 122333 3444555667788888888885
No 16
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}
Probab=97.74 E-value=5.6e-06 Score=81.69 Aligned_cols=118 Identities=14% Similarity=0.044 Sum_probs=80.3
Q ss_pred CCCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCcc--CcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcC
Q 002301 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDES--RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR 759 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~ 759 (940)
..|++++||. |++||+..|+....++.+. +.... +++.. +..+...++.+ |++||++.+.+.......+.
T Consensus 99 ~~i~~~~dLk--Gk~vgv~~~s~~~~~l~~~-~~~~~~v~~v~~-~~~~~~~al~~----G~vDa~v~~~~~~~~~~~~~ 170 (228)
T d2ozza1 99 LICRKGESGN--VKRVGLDSRSADQKIMTDV-FFGDSDVERVDL-SYHESLQRIVK----GDVDAVIWNVVAENELTMLG 170 (228)
T ss_dssp EEEETTCGGG--CCEEEECTTCHHHHHHHHH-HHTTSCCEEEEC-CHHHHHHHHHH----TSCCEEEEEC-CHHHHHHTT
T ss_pred cccCChhhcC--CCEEEecCCChHHHHHHHc-CCCccceEEEeC-CHHHHHHHHHc----CceeEEEeCcHHHHHHHhcC
Confidence 4678899998 9999999999888777543 33323 33444 57789999999 99999999888888877776
Q ss_pred CcEEEeCC---ccccCcceeecCCCCcchHHHHHHHHhcccccchHHHHHhhcc
Q 002301 760 CEFSIVGQ---VFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHDKWLL 810 (940)
Q Consensus 760 ~~l~~~~~---~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~i~~kw~~ 810 (940)
.+...+.. ........++.+++.+....+.++ +.+...+.++.++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~vivir~~~~~v~~lv~a---~ie~~e~~~~qk~i~~ 221 (228)
T d2ozza1 171 LEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRA---VVDKHALLAHQQRVVS 221 (228)
T ss_dssp EEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHH---HCCHHHHHHHHHHHHT
T ss_pred cccceeecccccccceeEEEEEcCCcHHHHHHHHH---HHhHHHHHHHHHHHhc
Confidence 54443322 222344567888887654444444 4556667777777765
No 17
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=97.74 E-value=0.00066 Score=70.88 Aligned_cols=212 Identities=9% Similarity=-0.004 Sum_probs=137.1
Q ss_pred CCCceEEEEEEeecC--CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cC
Q 002301 27 GRPSVVNIGALLSFS--TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GP 103 (940)
Q Consensus 27 ~~~~~i~IG~l~~~~--~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp 103 (940)
...++++||++.|-. +.+-.....+++.++++.+ . ++.+.....++..|+..-.+....++++++.+|| .|
T Consensus 36 ~~~k~~~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g----~--~~~i~~~~~~s~~d~~~q~~~i~~~i~~~vDgIIi~~ 109 (338)
T d1jx6a_ 36 PTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLN----I--NYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 109 (338)
T ss_dssp CCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTT----C--CEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHcC----C--cEEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 456789999999853 3333455677777777752 1 3566667788888988878888889999998765 55
Q ss_pred CCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCC--eEEEEEEEcCCc-chhh
Q 002301 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGW--REVIAIYVDDDH-GRNG 180 (940)
Q Consensus 104 ~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w--~~v~ii~~d~~~-g~~~ 180 (940)
..+.....+.+++...++|+|......+......++.+.-+..++..-++.+++++...+. ++++++.....+ ....
T Consensus 110 ~~~~~~~~i~~~~~~~~ipvv~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~i~~i~~~~~~~~~~R 189 (338)
T d1jx6a_ 110 DTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVR 189 (338)
T ss_dssp SSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHH
T ss_pred CcccchHHHHHHHHhCCCeEEEEccCCcccccccCCCceEEecCHHHHHHHHHHHHHHhCCCCeEEEEEecccccccHHH
Confidence 5667778888999999999997644333222233344444567777778888888776653 578777654433 2345
Q ss_pred HHHHHHHHhcCc-eeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCCC
Q 002301 181 IAALGDTLAAKR-CRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 181 ~~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~~ 247 (940)
.+.|.+.+++.| +.+.....-. .+.+.-...++++.. ..+++|+.. +...+..+++++++.|..
T Consensus 190 ~~gf~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~-nd~~A~g~~~al~~~G~~ 256 (338)
T d1jx6a_ 190 GDTFIHQVNRDNNFELQSAYYTK--ATKQSGYDAAKASLAKHPDVDFIYAC-STDVALGAVDALAELGRE 256 (338)
T ss_dssp HHHHHHHHHHHHCCEEEEEECCC--SSHHHHHHHHHHHHHHCCCCSEEEES-SHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHhhcccccceeeccc--chHHHHHHHHHHHhhhcccccccccc-cchhHhhhhhhhhhhhcc
Confidence 678888887776 3443332222 333433444444433 345554443 334566788888888863
No 18
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=97.68 E-value=0.00051 Score=69.23 Aligned_cols=200 Identities=11% Similarity=-0.022 Sum_probs=123.5
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchhHH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSH 110 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~a~ 110 (940)
-||++.|-- ...-.....+++.+.++ .|+.+.+...+ ..++..-......|++++|.+||= +..... .
T Consensus 2 ~igv~~~~l~~~~~~~i~~~i~~~a~~--------~Gy~v~v~~~~-~~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~-~ 71 (271)
T d1jyea_ 2 LIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVSMVE-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQ-D 71 (271)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEEECC-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHH-H
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEEEECC-CCCHHHHHHHHHHHHhcCCCEEEeccccCch-h
Confidence 589999853 33333455667766666 37887544422 234445455567788889987763 333332 3
Q ss_pred HHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CcchhhHHHHHHHH
Q 002301 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD--DHGRNGIAALGDTL 188 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~~l 188 (940)
.....+...++|+|.+... + +..+++ +..++..-++.+++.+...|-++|++|..+. .......+.+++.+
T Consensus 72 ~~~~~~~~~~iPvV~~d~~-~---~~~~~~---V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~~ 144 (271)
T d1jyea_ 72 AIAVEAACTNVPALFLDVS-D---QTPINS---IIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYL 144 (271)
T ss_dssp HHHHHHHTTTSCEEESSSC-T---TSSSCE---EEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeeeeecc-c---cccCCc---cccchhhccccceeeeeccccccccccccccccchHHhhhHHHHHHh
Confidence 4445677889999987431 1 223343 3466666677778888888999999998543 33456678899999
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHH-HhcC-CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeE
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVK-VALT-ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~-l~~~-~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~ 252 (940)
++.++++....... .+..+....+.+ +... .++.|+ +.+...+..+++++++.|...++.+
T Consensus 145 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ai~-~~~~~~a~~~~~~l~~~g~~vp~di 207 (271)
T d1jyea_ 145 TRNQIQPIAEREGD--WSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADI 207 (271)
T ss_dssp HHTTCCCSEEEECC--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred hhccccccceeccc--cccccccchhhhhhhcccccchhh-ccchhhhhHHHHhHHHhhccCCceE
Confidence 99988765544433 233333333333 3333 345544 4444566779999999998755433
No 19
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=97.60 E-value=0.0032 Score=64.22 Aligned_cols=215 Identities=10% Similarity=0.016 Sum_probs=127.4
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cCCCchh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAVT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~ 108 (940)
+||||++.+.. ..+-.....+++.|.++. |+++.+. ...|+..-.+....++.++|.+|| -|.....
T Consensus 1 ~~kIg~v~~~~~~p~~~~~~~g~~~aa~~~--------G~~~i~~---~~~d~~~q~~~i~~li~~~vDgiIi~~~~~~~ 69 (305)
T d8abpa_ 1 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEVIKI---AVPDGEKTLNAIDSLAASGAKGFVICTPDPKL 69 (305)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEEEEE---ECCSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEE---cCCCHHHHHHHHHHHHHcCCCEEEEccccccc
Confidence 58999999986 334445677888887775 5666332 234777777788889999999865 5556666
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH----HHcCC---eEEEEEEEcCCcc--hh
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV----DHYGW---REVIAIYVDDDHG--RN 179 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l----~~~~w---~~v~ii~~d~~~g--~~ 179 (940)
...+...+...++|+|.+...-+.-.....+.+-....++...+..+++.+ .+-++ ....++....+.. ..
T Consensus 70 ~~~~~~~a~~~giPVV~~d~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 149 (305)
T d8abpa_ 70 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 149 (305)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred cHHHHHHHHhcCCCEEEEcCccccccccccCccceeeehHHHHHHHHHHHHHHHhccccccccceEEEEcCCCCCcHHHH
Confidence 667778899999999987442222111233444445556665556555543 22232 3444444444432 34
Q ss_pred hHHHHHHHHhcCcee---EEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEec-CCcHHHHHHHHHHcCCCCCCeEE
Q 002301 180 GIAALGDTLAAKRCR---ISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTH-YNRGPVVFHVAQYLGMLGTGYVW 253 (940)
Q Consensus 180 ~~~~l~~~l~~~g~~---v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~-~~~~~~~l~~a~~~g~~~~~~~w 253 (940)
..+.+.+.+++.+.. +.....-. .+...-....+.+... +.+.+++++. ...+..+++++++.|+..+...-
T Consensus 150 R~~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~a~g~~~Al~~~G~~~~~i~~ 227 (305)
T d8abpa_ 150 RTTGSMDALKAAGFPEKQIYQVPTKS--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 227 (305)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECSS--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHHhhccccccceeccCC--cchhhhHHHHHhhhccCCCcccccccccchHHHHHHHHHHHHhhccCCCceE
Confidence 567788888877642 22211111 2333333444444333 3345555544 34566788999999987665555
Q ss_pred EecCc
Q 002301 254 IATSW 258 (940)
Q Consensus 254 i~~~~ 258 (940)
++.+.
T Consensus 228 vg~d~ 232 (305)
T d8abpa_ 228 IGING 232 (305)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 55443
No 20
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.45 E-value=0.0026 Score=63.99 Aligned_cols=206 Identities=9% Similarity=0.005 Sum_probs=126.0
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cCCCchhHH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAVTSH 110 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~a~ 110 (940)
+||++.|-. ..+-.....+++-+.++- |+.+ .+.++..++....+....|+.+++.++| .+..... .
T Consensus 2 tIg~i~~~~~~pf~~~~~~gi~~~~~~~--------gy~~--~~~~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 70 (282)
T d1dbqa_ 2 SIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTL--ILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-P 70 (282)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEeeecccccc-h
Confidence 589998875 334445667777766663 5655 4556777887777777778888888844 4433332 2
Q ss_pred HHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--cchhhHHHHHHHH
Q 002301 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGDTL 188 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l 188 (940)
.........++|+|......+.. .++ .-..++...-+..+++.+...|-++++++..... ........+.+.+
T Consensus 71 ~~~~~~~~~~iPvV~~~~~~~~~---~~~--~~v~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~~~~~~~~~~ 145 (282)
T d1dbqa_ 71 LLAMLEEYRHIPMVVMDWGEAKA---DFT--DAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAM 145 (282)
T ss_dssp HHHHHHHTTTSCEEEEECSSCCS---SSC--EEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHH
T ss_pred hhhhHHhhcCCCceEEEeccccc---ccc--eEEEecccchhhhhhhhhccccccccccccCCcchhhhhhhhhhHHHHH
Confidence 23334455689999876543321 122 2244556666777888889999999999975433 3445567777777
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
.+.+................+......++... .++.|+. ++...+..+++.+.++|+..++-+-|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~~l~~~g~~vp~di~v~ 213 (282)
T d1dbqa_ 146 EEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLI 213 (282)
T ss_dssp HHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred hhcCCCccceEEEecccchhhHHHHHHHHHhCCCCCceEEE-ecchhhhhHHHHHHhccCCCCceEEEE
Confidence 77776554333333233444444555555443 3445444 344567788999999998765544343
No 21
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=97.23 E-value=0.0027 Score=63.68 Aligned_cols=205 Identities=13% Similarity=0.026 Sum_probs=125.6
Q ss_pred EEEEEeec-CCcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHHH
Q 002301 33 NIGALLSF-STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHV 111 (940)
Q Consensus 33 ~IG~l~~~-~~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~~ 111 (940)
.||++.|- +..+-.....+++-++++ .|+++. +.++..++..-.+....++..++.++|=-...... .
T Consensus 5 tIgvvvp~l~~~f~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~e~~~i~~~~~~~vdgii~~~~~~~~-~ 73 (275)
T d2nzug1 5 TVGVIIPDISNIFYAELARGIEDIATM--------YKYNII--LSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-E 73 (275)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEECCSCCCH-H
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHH--------cCCEEE--EEECCCCHHHHHHHHHHHHhcCCceeeccccchhh-H
Confidence 58999984 333223445566555555 256664 45566677766666777788888887732222222 2
Q ss_pred HHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcc---hhhHHHHHHHH
Q 002301 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHG---RNGIAALGDTL 188 (940)
Q Consensus 112 va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g---~~~~~~l~~~l 188 (940)
........++|++......+ ...+ -.+.+++..-+..+++.+...|-++++++..+.... ......+.++.
T Consensus 74 ~~~~l~~~~~pvv~~~~~~~---~~~~---~~V~~d~~~~~~~~~~~l~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 147 (275)
T d2nzug1 74 HVEELKKSPVPVVLAASIES---TNQI---PSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRAL 147 (275)
T ss_dssp HHHHHHHCSSCEEEESCCCT---TCCS---CEEEECHHHHHHHHHHHHHHTTCSCEEEEESCTTSHHHHTTHHHHHHHHH
T ss_pred HHHHHhhccccccccccccc---cccc---cccccccccchhHHHHHHHHhcccceEEEecCcccchhhhHHHHHHHHHH
Confidence 23556778999987643322 1222 335567777788888999899999999998543332 24456677788
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEe
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~ 255 (940)
.+.|+++..........+...-...+.++... .+++|+. ++...+..++.++.++|+..+.-+.+.
T Consensus 148 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~-~~d~~A~g~~~~l~~~g~~ip~di~vi 215 (275)
T d2nzug1 148 TESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGLNVPNDLEII 215 (275)
T ss_dssp HHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHTTTCCTTTTCEEE
T ss_pred HHcCCCCCcceEEeccCCHHHHHHHHHHHHhcCCCCeEEEe-cChHHHHHHHHHHhhcCCCCCccceee
Confidence 88887654222222223444445555665543 4555443 334567789999999998766555554
No 22
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=97.06 E-value=0.011 Score=58.58 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=122.9
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEc-CCCchhHH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSH 110 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~a~ 110 (940)
+||++.|-- ..+-.....+++-+.++. |+.+ .+.++..++..-.+....++.+++.+++- |.......
T Consensus 3 tIgvvvp~~~~~f~~~~~~gi~~~a~~~--------g~~~--~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~ 72 (271)
T d2dria_ 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCcccccccccccchH
Confidence 399999863 333345566777666663 5555 45677788888888888999999988764 44444445
Q ss_pred HHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcC--CeEEEEEEEcCC--cchhhHHHHHH
Q 002301 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG--WREVIAIYVDDD--HGRNGIAALGD 186 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~--w~~v~ii~~d~~--~g~~~~~~l~~ 186 (940)
.....+...++|+|.+....+ ..+..-.+.+++...+..+++++...+ -.+++++..... ..+.....+++
T Consensus 73 ~~~~~~~~~~ipvV~~~~~~~-----~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (271)
T d2dria_ 73 NAVKMANQANIPVITLDRQAT-----KGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS-----SSCCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhcceeEEEeccccc-----ccccceEEeecchhhHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHhHHH
Confidence 556778889999998753221 112334456777777788888875543 347777775433 33455667788
Q ss_pred HHhcCceeEEEeecCCCCCChhHHHHHHHHHhc--CCCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 187 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
.+++.+.......... ............+.. .+++.|+... ...+..+++++.+.|.
T Consensus 148 ~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ai~~~~-d~~a~g~~~al~~~g~ 206 (271)
T d2dria_ 148 AVAAHKFNVLASQPAD--FDRIKGLNVMQNLLTAHPDVQAVFAQN-DEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHTCEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEEESS-HHHHHHHHHHHHHHTC
T ss_pred Hhhcccccccceeeec--chhhhhhhhHHHHHhcccCceEEeccc-HHHHHHHHHHHHHhCC
Confidence 8887776665544333 233333333333333 3455544433 4567778888888873
No 23
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.99 E-value=0.0078 Score=59.45 Aligned_cols=189 Identities=11% Similarity=0.019 Sum_probs=123.4
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEEcCCCchhHHH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHV 111 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~a~~ 111 (940)
.||++.|-. ...-.....++..++++- |+.+ .+.++..++..-.+....+..++|.+||=-..+...
T Consensus 4 ~Igvi~p~~~~~~~~~~~~~i~~~~~~~--------Gy~~--~~~~s~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~-- 71 (255)
T d1byka_ 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDP--IMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT-- 71 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCC--
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHhccccceeeccccchH--
Confidence 699999864 333334556666666663 5665 456678888887777778888888877632222221
Q ss_pred HHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC---CcchhhHHHHHHHH
Q 002301 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD---DHGRNGIAALGDTL 188 (940)
Q Consensus 112 va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~l~~~l 188 (940)
..+....++|++..+... ..+| .+.+++..-++.+++++...|-++++++..+. ..+....+.+.+.+
T Consensus 72 -~~~~~~~~~p~v~i~~~~-----~~~~---~v~~D~~~~g~~~~~~L~~~g~~~i~~i~~~~~~~~~~~~r~~g~~~~~ 142 (255)
T d1byka_ 72 -EEMLAHWQSSLVLLARDA-----KGFA---SVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFC 142 (255)
T ss_dssp -TTTSGGGSSSEEEESSCC-----SSCE---EEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHH
T ss_pred -HHHHHHcCCCEEEeccCC-----CCCC---EEEeCcHHHHHHHHHHHHHhccccccccCCCcccccHHHHHhhHHHHHH
Confidence 256677788888764322 2234 35678888888889999889999999996432 22345678899999
Q ss_pred hcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcCC
Q 002301 189 AAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~ 246 (940)
++.|+...... . ..+.++-...+.++...+++.|| +++...+..+++++++.|.
T Consensus 143 ~~~~i~~~~~~--~-~~~~~~~~~~~~~~l~~~~~aii-~~~d~~A~g~~~~l~~~g~ 196 (255)
T d1byka_ 143 KAHKLHPVAAL--P-GLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHTTCCCEEEC--C-CSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHcCCCccccc--C-CCCHHHHHHHHHHHhCCccceee-ccchhhHhhHHHHHHHhCc
Confidence 99998644322 1 12333333455555556788754 4445566778899988885
No 24
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=96.96 E-value=0.022 Score=56.97 Aligned_cols=214 Identities=13% Similarity=0.015 Sum_probs=131.4
Q ss_pred EEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cCCCchhHH
Q 002301 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAVTSH 110 (940)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~a~ 110 (940)
+.+++.|-- ..+-.....|++-+.++. |+++.+...++..|+..-.+...+++.+++.+|| -|..+....
T Consensus 3 ~~a~i~~~~~npff~~i~~g~~~~a~~~--------g~~~~i~~~~~~~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~ 74 (288)
T d1guda_ 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCCcchhh
Confidence 456676653 333345678888888874 6888888888888998888888899999999885 455555555
Q ss_pred HHHHhhccCCccEEeeecCCCC--CCCCCCCceEEecCChHHHHHHHHHHH-HHc--CCeEEEEEEEcCCc--chhhHHH
Q 002301 111 VVSHVANELQVPLLSFSATDPT--LSSLQFPYFVRTTQSDQYQMAAIAEIV-DHY--GWREVIAIYVDDDH--GRNGIAA 183 (940)
Q Consensus 111 ~va~~~~~~~vP~Is~~at~~~--ls~~~~p~~~r~~psd~~~~~ai~~~l-~~~--~w~~v~ii~~d~~~--g~~~~~~ 183 (940)
....-+...++|+|.+...-.. ......+...-+..++...+...++.+ ++. +-.+++++..+... .+.....
T Consensus 75 ~~l~~~~~~gipvv~~d~~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~r~~~ 154 (288)
T d1guda_ 75 MPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNG 154 (288)
T ss_dssp HHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEeCCCCccccccccCCCeeeEEecCHHHHHHHHHHHHHHHhccCCceeeccCCCcccchhhHHHHh
Confidence 5556778889999986432111 011222334445666666676666664 332 23467766644333 3344566
Q ss_pred HHHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhcC--CCeEEEEEecCCcHHHHHHHHHHcCCCCCCeEEEecCc
Q 002301 184 LGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSW 258 (940)
Q Consensus 184 l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~ 258 (940)
+.+.+.+. ++++....... .+.+.......++... +++.| ++++...+..+++++++.|+ ..+...++.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~-~~di~ivg~D~ 228 (288)
T d1guda_ 155 ATEAFKKASQIKLVASQPAD--WDRIKALDVATNVLQRNPNIKAI-YCANDTMAMGVAQAVANAGK-TGKVLVVGTDG 228 (288)
T ss_dssp HHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHTTC-TTTSEEEEESC
T ss_pred hhcccccccccccceeeecc--chhhHHHHHHHHhhccCccccee-eccCCHHHHHHHHHHHHcCC-CCCeEEEecCC
Confidence 76766665 35655443333 3445445555555433 34444 45555667778999999997 33445455443
No 25
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=96.19 E-value=0.18 Score=50.58 Aligned_cols=201 Identities=9% Similarity=0.014 Sum_probs=112.1
Q ss_pred eEEEEEEeecC-CcchhHHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCcEEEE-cCCCchh
Q 002301 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAVT 108 (940)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Ave~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~ 108 (940)
.-+||++.+.. ..+-.....+++.+.++. |+++.+. ..+..|+..-.+....++.+++.+|| .|..+..
T Consensus 3 ~~kI~~i~~~~~npf~~~~~~g~~~~a~~~--------G~~v~~~-~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~ 73 (316)
T d1tjya_ 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GIDVTYD-GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDG 73 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCEEEEC-CCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSST
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEE-ECCCCCHHHHHHHHHHHHhcCCCeeeecccccch
Confidence 45899998774 444456778888888875 5666442 24557888878888899999998775 5666666
Q ss_pred HHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH---HHcCCeEEEEEEEcCCcc--hhhHHH
Q 002301 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYGWREVIAIYVDDDHG--RNGIAA 183 (940)
Q Consensus 109 a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l---~~~~w~~v~ii~~d~~~g--~~~~~~ 183 (940)
......-+...++|++.+....+. .....+. ....+......+...+ ...+...+.++....... ......
T Consensus 74 ~~~~~~~a~~~gi~vv~~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (316)
T d1tjya_ 74 LCPALKRAMQRGVKILTWDSDTKP---ECRSYYI-NQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKE 149 (316)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCG---GGCSEEE-ESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHH
T ss_pred hhhhhhhhhcccccceeccccccc---ccccccc-ccchhHHHHHHHHHHHHHhhcccccceeeecccccccchhhhhhH
Confidence 666667788889999987553332 1112222 2223333333333332 223566666655332211 122333
Q ss_pred HHHHHhcC--ceeEEEeecCCCCCChhHHHHHHHHHhcCCCeE-EEEEecCCcHHHHHHHHHHcCC
Q 002301 184 LGDTLAAK--RCRISFKAPLSVEATEDEITDLLVKVALTESRI-IVVHTHYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 184 l~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~v-iv~~~~~~~~~~~l~~a~~~g~ 246 (940)
+....... +..+.....- ..+.+.-....+.+....+++ .|++++...+.-+++++++.|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~p~~~aI~~~nd~~a~ga~~al~~~g~ 213 (316)
T d1tjya_ 150 AKAKISQEHPGWEIVTTQFG--YNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR 213 (316)
T ss_dssp HHHHHHHHCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcccccchhhccc--hhhhHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHcCC
Confidence 33444333 3344332222 133444444444444344444 2334445566778888888775
No 26
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}
Probab=95.77 E-value=0.048 Score=52.69 Aligned_cols=196 Identities=14% Similarity=0.136 Sum_probs=124.1
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+.. .....+-.+++..+.++.+ .++++... ++...+++.|.+|++|++++...
T Consensus 6 G~LrIg~~~-------------~~~~~~LP~~l~~f~~~~P-~v~v~l~~-------~~~~~l~~~l~~g~~D~ai~~~~ 64 (237)
T d1al3a_ 6 GSLYVATTH-------------TQARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATEA 64 (237)
T ss_dssp EEEEEEECH-------------HHHHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESSC
T ss_pred EEEEEEeEH-------------HHHHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHhccCCcEEEEeec
Confidence 468998863 2234566789999999886 45666664 66899999999999999987322
Q ss_pred eecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCcee
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (940)
.. ....+ ...|.....+++++++..+..
T Consensus 65 ~~--~~~~l-~~~~l~~~~~~~v~~~~h~la------------------------------------------------- 92 (237)
T d1al3a_ 65 LH--LYDDL-VMLPCYHWNRSIVVTPEHPLA------------------------------------------------- 92 (237)
T ss_dssp CC--TTSCE-EEEEEEEECEEEEECTTSTTT-------------------------------------------------
T ss_pred cc--ccccc-cccccccceEEEEEecCcccc-------------------------------------------------
Confidence 21 11222 245677778888887654110
Q ss_pred ehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCe-EEEeCchHH
Q 002301 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPI-GYQVNSFAR 706 (940)
Q Consensus 628 ~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i-~~~~gs~~~ 706 (940)
.....+++||. +.++ .+..++...
T Consensus 93 -----------------------------------------------------~~~~~~~~dL~--~~p~i~~~~~~~~~ 117 (237)
T d1al3a_ 93 -----------------------------------------------------TKGSVSIEELA--QYPLVTYTFGFTGR 117 (237)
T ss_dssp -----------------------------------------------------TTSCCCHHHHH--TSEEEEECTTSTTH
T ss_pred -----------------------------------------------------ccccccchhhc--cCCcccccccchHH
Confidence 03445789998 6664 444454333
Q ss_pred HHHH---hhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEE--EeCCccccCcceeecCCC
Q 002301 707 NYLV---DELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFS--IVGQVFTKNGWGFAFPRD 781 (940)
Q Consensus 707 ~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~k~ 781 (940)
..+. ...+.........++.+...+.+.. |...+++.+. .++... ...+. ..........++++.+|+
T Consensus 118 ~~~~~~~~~~g~~~~~~~~~~s~~~~~~~v~~----g~Gi~~~p~~-~v~~~~--~~~l~~~~~~~~~~~~~~~l~~~~~ 190 (237)
T d1al3a_ 118 SELDTAFNRAGLTPRIVFTATDADVIKTYVRL----GLGVGVIASM-AVDPVS--DPDLVKLDANGIFSHSTTKIGFRRS 190 (237)
T ss_dssp HHHHHHHHHHTCCCEEEEEESSHHHHHHHHHH----TSCEEEEEGG-GCCTTT--CTTSEEEECBTTBCCEEEEEEEETT
T ss_pred HHHHHHHHHcCCCCcceeecCCHHHHHHHhcC----CCEEEechHH-hhhhhh--CCCEEEEECCCCCcceEEEEEEeCC
Confidence 3322 2334443445567889999999998 4545666543 333211 22333 333455566789999999
Q ss_pred CcchHHHHHHHHhcccc
Q 002301 782 SPLAVDISTAILKLSEN 798 (940)
Q Consensus 782 spl~~~~~~~il~l~e~ 798 (940)
..+.......|..+.+.
T Consensus 191 ~~l~~~~~~Fie~~~~~ 207 (237)
T d1al3a_ 191 TFLRSYMYDFIQRFAPH 207 (237)
T ss_dssp CCCCHHHHHHHHHHCTT
T ss_pred CccCHHHHHHHHHHHHH
Confidence 99888888888777664
No 27
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=95.70 E-value=0.0016 Score=54.09 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=58.9
Q ss_pred HHHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeeee
Q 002301 600 LAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 677 (940)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 677 (940)
++.+.++++.|+..++ ....++.+++|+++.++..-| .-.|.+..+|++.++|.++++.+.+..++.+++.++.
T Consensus 20 ~~~s~~~~~~e~~~~~----~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 95 (103)
T d1r3jc_ 20 LAGSYLAVLAERGAPG----AQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG 95 (103)
T ss_dssp HHHHHHHHHHHTTSTT----CCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC----cccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777764432 223467899999999998776 4479999999999999999999999999999988765
Q ss_pred c
Q 002301 678 Q 678 (940)
Q Consensus 678 ~ 678 (940)
.
T Consensus 96 ~ 96 (103)
T d1r3jc_ 96 R 96 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}
Probab=94.25 E-value=0.32 Score=45.61 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=125.8
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... . -.-+-.+++..+.++.+ +++++... ++...+...|.+|++|++++...
T Consensus 6 G~l~i~~~~~--~-----------~~~~Lp~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~l~~g~~Di~i~~~~ 64 (220)
T d2fyia1 6 GVLTIATTHT--Q-----------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIASER 64 (220)
T ss_dssp EEEEEEECHH--H-----------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESSS
T ss_pred EEEEEEEEHH--H-----------HHHHHHHHHHHHHHHCC-CcEEEEEE-------CCcHHHHHHHHhhhhhhhhhccc
Confidence 5789998742 1 12344578889999885 45566665 66899999999999999987432
Q ss_pred eecCcceeeeeccccccccEEEEEeccCCCCCcceeecCcchhhHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcCCcee
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (940)
.. ....+. ..|.....+++++++..+..
T Consensus 65 ~~--~~~~~~-~~~l~~~~~~~v~~~~~~~~------------------------------------------------- 92 (220)
T d2fyia1 65 LS--NDPQLV-AFPWFRWHHSLLVPHDHPLT------------------------------------------------- 92 (220)
T ss_dssp ST--TCTTEE-EEEEEEECEEEEEETTCGGG-------------------------------------------------
T ss_pred cc--cccccc-ccccccccceeecccccccc-------------------------------------------------
Confidence 22 122232 45677788888888765110
Q ss_pred ehhhhhhHhhccccccccccchhhhHHHHHhhhhhhhhhccceeeeeeeeccccCCCCChhHhhhCCCCeE-EEeCchHH
Q 002301 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIG-YQVNSFAR 706 (940)
Q Consensus 628 ~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~si~dL~~~~~~i~-~~~gs~~~ 706 (940)
...--+.+||. +.++. ...++...
T Consensus 93 -----------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~~ 117 (220)
T d2fyia1 93 -----------------------------------------------------QISPLTLESIA--KWPLITYRQGITGR 117 (220)
T ss_dssp -----------------------------------------------------TSSSCCHHHHT--TSCEEEECTTSTTH
T ss_pred -----------------------------------------------------ccCcchhhhhc--cccccccccccchH
Confidence 02223688998 55644 44444433
Q ss_pred HHHHh---hhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeC--CccccCcceeecCCC
Q 002301 707 NYLVD---ELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG--QVFTKNGWGFAFPRD 781 (940)
Q Consensus 707 ~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~ 781 (940)
..+.+ ..+.........++.+....++.. |...+++.+....++ .+.++..+. +......++++++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~gi~ilp~~~~~~~---~~~~l~~l~~~~~~~~~~~~l~~~~~ 190 (220)
T d2fyia1 118 SRIDDAFARKGLLADIVLSAQDSDVIKTYVAL----GLGIGLVAEQSSGEQ---EEENLIRLDTRHLFDANTVWLGLKRG 190 (220)
T ss_dssp HHHHHHHHHTTCCCCEEEEESSHHHHHHHHHH----TSCEEEEEGGGGSTT---CCTTEEEECCTTTSCCEEEEEEEETT
T ss_pred HHHHHHHhhcccCCceeEEEccHHHHHHHHhh----cceEEeCcHHHHHHH---hcCCEEEEeCCCCCCceEEEEEEECC
Confidence 33322 223333344557888999999998 555566655432221 123455443 233444578899999
Q ss_pred CcchHHHHHHHHhcccccchHHHHH
Q 002301 782 SPLAVDISTAILKLSENGDLQRIHD 806 (940)
Q Consensus 782 spl~~~~~~~il~l~e~G~~~~i~~ 806 (940)
......+...|..+++.-..+.+.+
T Consensus 191 ~~~~~~~~~Fi~~~~~~~~~~~~~~ 215 (220)
T d2fyia1 191 QLQRNYVWRFLELCNAGLSVEDIKR 215 (220)
T ss_dssp CCBCHHHHHHHHHHCSSSCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcCCHHHHHH
Confidence 9888888888876666544444433
No 29
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=91.35 E-value=0.071 Score=44.80 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=47.5
Q ss_pred CCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeeeee
Q 002301 617 FRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 676 (940)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt 676 (940)
..+....++.+++|+++.++...| ...|.+..+|++.+++.+.++++.+.-.+.+.+-++
T Consensus 53 ~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fs 114 (116)
T d1xl4a2 53 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 114 (116)
T ss_dssp STTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445678899999999999765 448999999999999999999988877766555443
No 30
>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}
Probab=88.00 E-value=0.31 Score=45.20 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=53.6
Q ss_pred ceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeecee
Q 002301 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (940)
Q Consensus 468 ~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~ 547 (940)
.+||||+... . -..+-.+++..+.++.+ .++++... ++...++..+.+|++|+++....
T Consensus 5 G~lrig~~~~--~-----------~~~~lp~~l~~f~~~~P-~v~l~i~~-------~~~~~~~~~l~~~~~d~~~~~~~ 63 (212)
T d1i6aa_ 5 GPLHIGLIPT--V-----------GPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILALV 63 (212)
T ss_dssp EEEEEEECTT--T-----------HHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEECC
T ss_pred EEEEEEeEHH--H-----------HHHHHHHHHHHHHHHCC-CcEEEEEE-------CCCccccccccccchhhhheecc
Confidence 3699998732 1 12356688888888885 34565554 56889999999999999876432
Q ss_pred eecCcceeeeeccccccccEEEEEeccC
Q 002301 548 IITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 548 ~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
. ....+.+. +.....+++++++..
T Consensus 64 ~---~~~~~~~~-~l~~~~~~~~~~~~h 87 (212)
T d1i6aa_ 64 K---ESEAFIEV-PLFDEPMLLAIYEDH 87 (212)
T ss_dssp G---GGTTSEEE-EEEEEEEEEEEETTS
T ss_pred c---ccccccce-eccccceEEEeecCC
Confidence 2 22333333 445566667776553
No 31
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}
Probab=87.73 E-value=0.53 Score=46.73 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=41.3
Q ss_pred CCCCChhHhhhCCCCeEEEe-CchHHHH---HHhhhCCCc--cCcccCCCHHHHHHHhhcCCCCCceEEEEec
Q 002301 682 SPIKGIDSLRSSNYPIGYQV-NSFARNY---LVDELNIDE--SRLVPLNSPEEYAKALKDGPHKGGVAAVVDD 748 (940)
Q Consensus 682 ~~i~si~dL~~~~~~i~~~~-gs~~~~~---l~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~ 748 (940)
..|++++||. |++|++.. |+..... +.+..+... ...+...+..+..+++.+ |++|+++.-
T Consensus 105 s~i~s~~DL~--gk~v~~g~~gsg~~~~~~~~l~~~g~~~dd~~~~~~~~~~~~~~al~~----g~iDa~~~~ 171 (298)
T d1us5a_ 105 AGIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQD----KRADALFYT 171 (298)
T ss_dssp SSCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHT----TSCSEEEEE
T ss_pred CCcCchhhcc--CccccccCCCchHHHHHHHHHHHhCCCcccccceeccchhHHHHHhcC----CceeEEEEe
Confidence 5899999998 88888764 4433322 223344432 223455688999999999 899998764
No 32
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=87.40 E-value=0.25 Score=41.27 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=45.7
Q ss_pred CCCCCCcCCceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeee
Q 002301 616 EFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTS 673 (940)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s 673 (940)
+..+....++.+++|+++.++..-| ...|.+..+|++.+++.++++++.+.-++.+.+
T Consensus 53 ~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~ 112 (116)
T d1p7ba2 53 PIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFA 112 (116)
T ss_dssp CCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445678999999999998765 447999999999999999999988776665544
No 33
>d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=86.35 E-value=4.8 Score=36.29 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=41.8
Q ss_pred CceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 467 g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
.+++|||+... -...+-..++..+.++.+ .++++... +..+.++++|.+|++|++++
T Consensus 7 ~~~~rI~~~~~-------------~~~~~lp~ll~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dl~i~ 63 (212)
T d2esna2 7 QRTFVFAATDY-------------TAFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALG 63 (212)
T ss_dssp CCEEEEECCHH-------------HHHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEE
T ss_pred CcEEEEEEcHH-------------HHHHHHHHHHHHHHHHCC-CcEEEEEe-------cCcHHHHHHHHHhccccccc
Confidence 47899988631 123455678889998885 35566664 44677999999999999987
No 34
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}
Probab=84.93 E-value=0.8 Score=47.45 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcchh-hHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC
Q 002301 153 AAIAEIVDHYGWREVIAIYVDDDHGRN-GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (940)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~-~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~ 231 (940)
+.+.++++.+|.+++.+|+.+..+... ..+.+.+.|++.|+++..-..+.+.++.+++.+.++.++..++|+||-.+.+
T Consensus 23 ~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~IIavGGG 102 (398)
T d1vlja_ 23 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGG 102 (398)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHhcCCCeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCCCCHHHHHHHhhhcccccCceEEecCCc
Confidence 447788999999999999876655444 5799999999999987765555555678889999999999999999887654
No 35
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]}
Probab=81.57 E-value=2.1 Score=40.45 Aligned_cols=40 Identities=8% Similarity=0.137 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 497 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 497 idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
..+++...++-|++ ++++.| .+|..++..|.+|++|++..
T Consensus 18 l~~~k~~~k~~Gi~--Ve~v~f------~~g~~~~~Al~~G~iD~~~~ 57 (240)
T d1xs5a_ 18 LEIAKEEVKKQHIE--LRIVEF------TNYVALNEAVMRGDILMNFF 57 (240)
T ss_dssp HHHHHHHHHTTTEE--EEEEEC------SCHHHHHHHHHHTSSSEEEE
T ss_pred HHHHHHHHHHcCCE--EEEEEe------CChhhHHHHHHcCCcceecc
Confidence 45677788888987 555555 35999999999999998764
No 36
>d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}
Probab=80.50 E-value=5.2 Score=36.35 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 466 ~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
..+++|||+... -...+-..++..+.++.+ .++++... ++...+...+.+|++|++++.
T Consensus 10 ~~~~~rI~~~~~-------------~~~~~lp~ll~~f~~~~P-~v~l~i~~-------~~~~~~~~~l~~g~~D~~i~~ 68 (219)
T d1utha_ 10 STRTFNLAMTDI-------------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 68 (219)
T ss_dssp CCCEEEEECCHH-------------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEEC
T ss_pred cCCEEEEEEcHH-------------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------ccHHHHHHHHhcCCceeeeee
Confidence 357899998731 123566788999999885 34566664 456788999999999999763
Q ss_pred eeeecCcceeeeeccccccccEEEEEeccC
Q 002301 546 IAIITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 546 ~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
.. .....+. ..+.....++++++...
T Consensus 69 ~~---~~~~~~~-~~~l~~~~~~~~~~~~~ 94 (219)
T d1utha_ 69 LP---ELQTGFF-QRRLFRHRYVCMFRKDH 94 (219)
T ss_dssp CT---TCCTTEE-EEEEEEECEEEEEETTC
T ss_pred cc---cccccch-hhhcccccccccccccc
Confidence 32 2222222 34445566666665543
No 37
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=80.23 E-value=0.92 Score=46.76 Aligned_cols=87 Identities=9% Similarity=0.030 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-
Q 002301 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (940)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~- 231 (940)
..+.++++.+|.+++.+|+...-.-....+.+.+.|++.|+++..-..+.+.++.+++...+...++.++|+||-.+.+
T Consensus 19 ~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGS 98 (385)
T d1rrma_ 19 GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGS 98 (385)
T ss_dssp GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHHhhhhhccCCCEEEecCCCc
Confidence 4577889999999998887433222235688999999999987655556666788899999999999999999987654
Q ss_pred -CcHHHHHH
Q 002301 232 -NRGPVVFH 239 (940)
Q Consensus 232 -~~~~~~l~ 239 (940)
-++.+.+.
T Consensus 99 ~iD~aK~ia 107 (385)
T d1rrma_ 99 PQDTCKAIG 107 (385)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHHHHH
Confidence 34444443
No 38
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=77.87 E-value=0.31 Score=37.44 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=43.8
Q ss_pred CceeehhhhhhHhhccc--cccccccchhhhHHHHHhhhhhhhhhccceeeee
Q 002301 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSI 674 (940)
Q Consensus 624 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~ 674 (940)
++.+++|+++.++..-| .-.|.+..+|++.++|.++++.+.+...+.+.+.
T Consensus 27 s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~~ 79 (80)
T d1lnqa2 27 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF 79 (80)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTT
T ss_pred CHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999776 3379999999999999999999988887776654
No 39
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
Probab=75.20 E-value=2.8 Score=42.36 Aligned_cols=84 Identities=10% Similarity=0.074 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcchh-hHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-
Q 002301 154 AIAEIVDHYGWREVIAIYVDDDHGRN-GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (940)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~~-~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~- 231 (940)
.+-++++.+| +++.+|+.+..+... ..+.+.+.|++.|+.+..-..+.+.++.+++...+..+++.++|+||-.+.+
T Consensus 19 ~l~~~~~~~g-~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 97 (359)
T d1o2da_ 19 KRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGS 97 (359)
T ss_dssp HHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHH
T ss_pred HHHHHHHHcC-CeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHhhhhccccCCceEEeccccc
Confidence 3556678888 788888876655443 5789999999999887644445555678899999999999999998877654
Q ss_pred -CcHHHHH
Q 002301 232 -NRGPVVF 238 (940)
Q Consensus 232 -~~~~~~l 238 (940)
-+..+++
T Consensus 98 ~iD~aK~i 105 (359)
T d1o2da_ 98 PMDFAKAV 105 (359)
T ss_dssp HHHHHHHH
T ss_pred chhHHHHH
Confidence 3344444
No 40
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=71.22 E-value=30 Score=29.76 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=42.1
Q ss_pred eEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeece
Q 002301 469 HLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (940)
Q Consensus 469 ~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~ 546 (940)
.||||+... -..++-..++..+.++.+ .++++... ++...+++++.+|++|++++..
T Consensus 3 ~lrIg~~~~-------------~~~~~Lp~~l~~f~~~~P-~v~l~i~~-------~~~~~l~~~l~~g~~D~~~~~~ 59 (205)
T d1ixca2 3 ELSVAYFGT-------------PIYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSRF 59 (205)
T ss_dssp EEEEEECSG-------------GGGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESC
T ss_pred EEEEEEEhH-------------HHHHHHHHHHHHHHHHCC-CcEEEEEE-------CCCccchhhhhhhhcccccccc
Confidence 488888632 123556688899988885 35566655 5689999999999999988744
No 41
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=68.68 E-value=12 Score=33.89 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=40.7
Q ss_pred HHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHH----HHHHhcCCCeEEEEEecC
Q 002301 158 IVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDL----LVKVALTESRIIVVHTHY 231 (940)
Q Consensus 158 ~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~----l~~l~~~~~~viv~~~~~ 231 (940)
.+++.| ++|++|..|. |=....++++...+..|+.+... . +..+.... +.+.+..+.|+|++...+
T Consensus 32 ~~~~~g-~kV~lit~Dt-~R~gA~eQL~~~a~~l~v~~~~~---~---~~~d~~~~l~~~~~~a~~~~~d~ilIDTaG 101 (211)
T d2qy9a2 32 QFEQQG-KSVMLAAGDT-FRAAAVEQLQVWGQRNNIPVIAQ---H---TGADSASVIFDAIQAAKARNIDVLIADTAG 101 (211)
T ss_dssp HHHTTT-CCEEEECCCT-TCHHHHHHHHHHHHHTTCCEECC---S---TTCCHHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHCC-CcEEEEeccc-ccccchhhhhhhhhhcCCccccc---c---cCCCHHHHHHHHHHHHHHcCCCEEEeccCC
Confidence 344445 5788777554 66667888888888888776421 1 12223333 333445678999998766
No 42
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=68.27 E-value=4.3 Score=39.54 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=59.0
Q ss_pred eEEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec-CCcHHHHHHHH
Q 002301 165 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~-~~~~~~~l~~a 241 (940)
++|++|.. +++|.....+.+++++++.|+++.... +...+...-...++.+...+++.||+... .......++++
T Consensus 4 ~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~--~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~~~~~~~~a 81 (316)
T d1tjya_ 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE--CCCCCHHHHHHHHHHHHhcCCCeeeecccccchhhhhhhhh
Confidence 67888875 477888999999999999998876532 21223444566777777789999998754 45567788888
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|.
T Consensus 82 ~~~gi 86 (316)
T d1tjya_ 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred hcccc
Confidence 88774
No 43
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=67.89 E-value=6.1 Score=37.40 Aligned_cols=79 Identities=3% Similarity=-0.008 Sum_probs=60.3
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec-CCcHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVA 241 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~-~~~~~~~l~~a 241 (940)
+.|++|.++ ++|.....+.+.+++++.|.++..... ..+.......+.++...+++++++... .......++.+
T Consensus 2 ~tIgvvvp~~~~~f~~~~~~gi~~~a~~~g~~~~i~~~---~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~~~~~~~ 78 (271)
T d2dria_ 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhcCCcccccccccccchHHHHHHH
Confidence 458888865 668889999999999999998864321 234555678888888889999988854 45567788888
Q ss_pred HHcCC
Q 002301 242 QYLGM 246 (940)
Q Consensus 242 ~~~g~ 246 (940)
.+.|+
T Consensus 79 ~~~~i 83 (271)
T d2dria_ 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred hhcce
Confidence 88875
No 44
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=63.60 E-value=8.5 Score=36.57 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=54.5
Q ss_pred eEEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHH
Q 002301 165 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 242 (940)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~ 242 (940)
|.|++|.. +++|....++.+.+++++.|..+.....- .+.+.....+..+...+.+.+|+......-......+.
T Consensus 1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~gy~~~~~~~~---~d~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 77 (282)
T d1dbqa_ 1 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAW---NNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE 77 (282)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC---CCHHHHHHHHHHHHhcCCCEEeeecccccchhhhhHHh
Confidence 57889885 46788888999999999999877643322 34455677888888889999888765544444443443
Q ss_pred HcC
Q 002301 243 YLG 245 (940)
Q Consensus 243 ~~g 245 (940)
..+
T Consensus 78 ~~~ 80 (282)
T d1dbqa_ 78 YRH 80 (282)
T ss_dssp TTT
T ss_pred hcC
Confidence 333
No 45
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=62.13 E-value=8.7 Score=36.68 Aligned_cols=80 Identities=11% Similarity=-0.013 Sum_probs=58.1
Q ss_pred EEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHHH
Q 002301 166 EVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVAQ 242 (940)
Q Consensus 166 ~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a~ 242 (940)
++++|.. +++|.....+.+++.+++.|.++.....-. ..+.......++++.+.++|.||+.... ......++++.
T Consensus 3 ~~a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~~~-~~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~~~l~~~~ 81 (288)
T d1guda_ 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-EGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAW 81 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC-CCCHHHHHHHHHHHHhcCCCEEEEecCCcchhhHHHHHHH
Confidence 5777775 467999999999999999998776532221 1233445677888888999999988554 45566788888
Q ss_pred HcCC
Q 002301 243 YLGM 246 (940)
Q Consensus 243 ~~g~ 246 (940)
+.|.
T Consensus 82 ~~gi 85 (288)
T d1guda_ 82 KKGI 85 (288)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 8774
No 46
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=61.90 E-value=5.3 Score=40.30 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC
Q 002301 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (940)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~ 231 (940)
..+.+.++.+| +++.+|+.... .....+.+.+.+++.|+.+.+. .++..++.+++......+++.++|+||-.+.+
T Consensus 20 ~~l~~~l~~~g-~r~lvvtd~~~-~~~~~~~l~~~L~~~~i~~~~~-~~~~~p~~~~v~~~~~~~~~~~~D~IiavGGG 95 (366)
T d1jq5a_ 20 TKIANYLEGIG-NKTVVIADEIV-WKIAGHTIVNELKKGNIAAEEV-VFSGEASRNEVERIANIARKAEAAIVIGVGGG 95 (366)
T ss_dssp GGHHHHHTTTC-SEEEEEECHHH-HHHTHHHHHHHHHTTTCEEEEE-ECCSSCBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHHcC-CeEEEEECCcH-HHHHHHHHHHHHHHCCCeEEEE-EeCCCCCHHHHHHHHHHhhccCCcEEEEecCC
Confidence 44777888899 89888864433 3334578889999999887644 45655677888888888888999998887644
No 47
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=55.79 E-value=13 Score=35.27 Aligned_cols=78 Identities=4% Similarity=-0.067 Sum_probs=55.4
Q ss_pred EEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHc
Q 002301 167 VIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYL 244 (940)
Q Consensus 167 v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~ 244 (940)
|+++.. ++.|....++.+.+++++.|..+.....-. .+.......++++.+.+.|.||+.........+..++.+.
T Consensus 3 igv~~~~l~~~~~~~i~~~i~~~a~~~Gy~v~v~~~~~--~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~~~ 80 (271)
T d1jyea_ 3 IGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVER--SGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACT 80 (271)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCS--SSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTT
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEECCC--CCHHHHHHHHHHHHhcCCCEEEeccccCchhHHHHHHHhc
Confidence 567776 466777889999999999999876432211 2445667778888888899888876555555666667665
Q ss_pred CC
Q 002301 245 GM 246 (940)
Q Consensus 245 g~ 246 (940)
+.
T Consensus 81 ~i 82 (271)
T d1jyea_ 81 NV 82 (271)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 48
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=55.20 E-value=65 Score=28.09 Aligned_cols=127 Identities=14% Similarity=0.162 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHh-cCcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHH
Q 002301 81 SGFLALAEALHLME-GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV 159 (940)
Q Consensus 81 ~~~~a~~~a~~li~-~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l 159 (940)
.-..++..+.+.+. +++.+||.-+. ++. -+-+..++|+|.. .++.....+++...
T Consensus 35 ~~e~av~~~~~~~~~~~~DviISRG~--ta~---~ir~~~~iPVV~I------------------~vs~~Dil~al~~a- 90 (186)
T d2pjua1 35 GFEKAVTYIRKKLANERCDAIIAAGS--NGA---YLKSRLSVPVILI------------------KPSGYDVLQFLAKA- 90 (186)
T ss_dssp CHHHHHHHHHHHTTTSCCSEEEEEHH--HHH---HHHTTCSSCEEEE------------------CCCHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHcCCCCEEEECch--HHH---HHHHhCCCCEEEE------------------cCCHhHHHHHHHHH-
Confidence 44567777766655 58999995332 222 2344568999863 13334455665544
Q ss_pred HHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHH
Q 002301 160 DHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFH 239 (940)
Q Consensus 160 ~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~ 239 (940)
+.++ ++++++...+. ....+.+.+.+ |+.+.... + .+.++....++++++.+.++||-... ..+
T Consensus 91 ~~~~-~kiavV~~~~~--~~~~~~~~~ll---~~~i~~~~-~---~~~~e~~~~v~~l~~~G~~vVVG~~~------~~~ 154 (186)
T d2pjua1 91 GKLT-SSIGVVTYQET--IPALVAFQKTF---NLRLDQRS-Y---ITEEDARGQINELKANGTEAVVGAGL------ITD 154 (186)
T ss_dssp TCTT-SCEEEEEESSC--CHHHHHHHHHH---TCCEEEEE-E---SSHHHHHHHHHHHHHTTCCEEEESHH------HHH
T ss_pred HHhC-CCEEEEeCCcc--chHHHHHHHHh---CCceEEEE-e---cCHHHHHHHHHHHHHCCCCEEECChH------HHH
Confidence 4444 67888875543 33466677766 44444332 3 36789999999999999999976542 457
Q ss_pred HHHHcCCC
Q 002301 240 VAQYLGML 247 (940)
Q Consensus 240 ~a~~~g~~ 247 (940)
.|.++||.
T Consensus 155 ~A~~~Gl~ 162 (186)
T d2pjua1 155 LAEEAGMT 162 (186)
T ss_dssp HHHHTTSE
T ss_pred HHHHcCCC
Confidence 78999984
No 49
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=54.45 E-value=25 Score=31.97 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCCChhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcE
Q 002301 683 PIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEF 762 (940)
Q Consensus 683 ~i~si~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l 762 (940)
.+++..++. +.+|+..--.....||. +.+.. .+++...-.-|..-.+ |-.|++++-.....-+-++ +|
T Consensus 111 ~~~~~~~~~--~~RIATkYp~it~~y~~-~~gi~-~~ii~~~Ga~E~ap~~------g~AD~IvDiv~TG~TLk~N--gL 178 (220)
T d1h3da1 111 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGIS-FKSCLLNGSVEVAPRA------GLADAICDLVSTGATLEAN--GL 178 (220)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCTTHHHHT------TSCSEEEEEESSCHHHHHT--TE
T ss_pred cccChhHcC--CCEEhhhhhHHHHHHHH-hcccc-ceeeeccccccceecC------CCeeEEEEeccchHHHHHC--cC
Confidence 456677776 77888887777888984 45554 5566655444544444 4567887765555443333 57
Q ss_pred EEeCCccccCcceeecCCCC
Q 002301 763 SIVGQVFTKNGWGFAFPRDS 782 (940)
Q Consensus 763 ~~~~~~~~~~~~~~~~~k~s 782 (940)
.++...+ ...-.++..+.+
T Consensus 179 k~id~Il-~SsA~LI~n~~s 197 (220)
T d1h3da1 179 REVEVIY-RSKACLIQRDGE 197 (220)
T ss_dssp EEEEEEE-EECEEEEEESSC
T ss_pred EEeeEEE-EEEEEEEEeccc
Confidence 7775444 444444455555
No 50
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=51.63 E-value=16 Score=34.92 Aligned_cols=77 Identities=9% Similarity=0.008 Sum_probs=58.9
Q ss_pred EEEEEEE--cCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHHH
Q 002301 166 EVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVAQ 242 (940)
Q Consensus 166 ~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a~ 242 (940)
+|+++.. +++|.....+.+++++++.|.++.... . .+.+...+.++.+...++|.||+.... .....++++|.
T Consensus 3 kIg~v~~~~~~p~~~~~~~g~~~aa~~~G~~~i~~~--~--~d~~~q~~~i~~li~~~vDgiIi~~~~~~~~~~~~~~a~ 78 (305)
T d8abpa_ 3 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--V--PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 78 (305)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEE--C--CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEc--C--CCHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHH
Confidence 5777764 577888999999999999999886542 2 244556677788888899999988654 45678899999
Q ss_pred HcCC
Q 002301 243 YLGM 246 (940)
Q Consensus 243 ~~g~ 246 (940)
+.|+
T Consensus 79 ~~gi 82 (305)
T d8abpa_ 79 GYDM 82 (305)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 9885
No 51
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=51.45 E-value=8.8 Score=26.56 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCCcCCceeehhhhhhHhhc
Q 002301 594 VTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFF 638 (940)
Q Consensus 594 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 638 (940)
++++.+++.+.++++.|+..++ .+..++..++|+++.++..
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~~~----~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGAPG----AQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTT----CCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCC----ccccccchhhhhheeeeec
Confidence 3444445567778999976543 2345788899998888754
No 52
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=49.91 E-value=33 Score=28.58 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=54.8
Q ss_pred eEEEEEEEcC-CcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC------CcHHHH
Q 002301 165 REVIAIYVDD-DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY------NRGPVV 237 (940)
Q Consensus 165 ~~v~ii~~d~-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~------~~~~~~ 237 (940)
++|.|||... ...+..++.+.+.+.+.|+.+....... ...+++......+. +.+.+++.+.. .....+
T Consensus 4 ~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~l~--~~d~iiigspt~~~~~~~~~~~~ 79 (148)
T d1vmea1 4 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSD--EERPAISEILKDIP--DSEALIFGVSTYEAEIHPLMRFT 79 (148)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECS--SCCCCHHHHHHHST--TCSEEEEEECEETTEECHHHHHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEeccc--ccccchhHhhhhHH--HCCEeEEEecccCCccCchHHHH
Confidence 5788888543 3334568899999999998876554333 23445555555555 45666666432 345567
Q ss_pred HHHHHHcCCCCCCeEEEecC
Q 002301 238 FHVAQYLGMLGTGYVWIATS 257 (940)
Q Consensus 238 l~~a~~~g~~~~~~~wi~~~ 257 (940)
+.......+.+..+.-+++.
T Consensus 80 l~~~~~~~~~~k~~~~fgs~ 99 (148)
T d1vmea1 80 LLEIIDKANYEKPVLVFGVH 99 (148)
T ss_dssp HHHHHHHCCCCCEEEEEEEC
T ss_pred HHHHhhcccCCCEEEEEEcC
Confidence 77776666655545555543
No 53
>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}
Probab=48.79 E-value=30 Score=29.31 Aligned_cols=64 Identities=6% Similarity=0.097 Sum_probs=47.6
Q ss_pred EEEEEEEcCCcch---hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhc-CCCeEEEEEecC
Q 002301 166 EVIAIYVDDDHGR---NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHY 231 (940)
Q Consensus 166 ~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viv~~~~~ 231 (940)
++++|..+|.-|. ..-..+.+.+++.|.++......+ .+.+.+...+.++.+ .+.|+|+..+..
T Consensus 4 r~~vitvsd~~~~~~D~ngp~L~~~l~~~G~~v~~~~iv~--D~~~~i~~~l~~~~~~~~~DlIvTtGGt 71 (155)
T d1y5ea1 4 RCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVK--DDKESIQQAVLAGYHKEDVDVVLTNGGT 71 (155)
T ss_dssp EEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEEC--SSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred EEEEEEEeCCCCCCcCccHHHHHHHHHhcCCEEEEeeeec--chHHHHHHHHHHHHhccCCCEEEEeeee
Confidence 5667765433333 456678888999999999888887 677888888888765 578999988654
No 54
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}
Probab=48.66 E-value=11 Score=32.34 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhc--CcEEEEcCCC--chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCC
Q 002301 84 LALAEALHLMEG--QTVAIIGPQD--AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQS 147 (940)
Q Consensus 84 ~a~~~a~~li~~--~v~aiiGp~~--s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ps 147 (940)
+.++.+.+++.+ +++.|+|... +.....+..+++.+++|++........+-+..+|++..+.+.
T Consensus 7 ~~ld~~~~~l~~A~rPvii~G~g~~~~~~~~~l~~lae~l~~pv~~t~~~~~~~~~~~~p~~~G~~~~ 74 (160)
T d1q6za1 7 QDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPA 74 (160)
T ss_dssp HHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTTSTTEEEECCS
T ss_pred HHHHHHHHHHHhCCCEEEEECcCccccccchHHHHHHHhcCceEEeeccccccccccccccccccccc
Confidence 456677777776 8999999763 456788999999999987642222333334556887776654
No 55
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=48.29 E-value=12 Score=32.96 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCC--chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecC
Q 002301 83 FLALAEALHLMEG--QTVAIIGPQD--AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQ 146 (940)
Q Consensus 83 ~~a~~~a~~li~~--~v~aiiGp~~--s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~p 146 (940)
..+++.+.+++.+ +++.|+|... +.....+..+++..++|+++....-..+.....|++.-+..
T Consensus 7 ~~~i~~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~~giPv~tt~~~~g~~~~~~~~~~~G~~g 74 (179)
T d1ozha1 7 DDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVG 74 (179)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECS
T ss_pred HHHHHHHHHHHHhCCCEEEEEchhhChhhHHHHHHHHHHhccceEEeecccccccccccccccccccC
Confidence 3567888888876 8888888664 45667889999999999997543333344344577766543
No 56
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=48.29 E-value=7 Score=34.53 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCC--chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecC
Q 002301 83 FLALAEALHLMEG--QTVAIIGPQD--AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQ 146 (940)
Q Consensus 83 ~~a~~~a~~li~~--~v~aiiGp~~--s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~p 146 (940)
.++++.+.+++.+ +.+.++|... +.....+..+++.+++|+++... ....-+..+|.++-+.+
T Consensus 6 ~~~i~~a~~lL~~AkrPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~-~kg~~p~~hp~~~G~~~ 72 (177)
T d2ihta1 6 QKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYI-AKGVLPVGHELNYGAVT 72 (177)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECST-TTTSSCTTCTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCEEEEECcCcchhhhHHHHHHHhhcceEEEEeccc-cccCCCCcccceeeeee
Confidence 4567778888876 7888888665 45678899999999999997433 33333456788886654
No 57
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]}
Probab=47.65 E-value=15 Score=34.42 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEee
Q 002301 497 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (940)
Q Consensus 497 idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~ 544 (940)
++.++...++.|.++ +++.+ .++..++.+|.+|++|++..
T Consensus 14 ~~~~~~~~~k~Gl~V--e~~~f------~~~~~~~~Al~~G~iD~~~~ 53 (255)
T d1p99a_ 14 WEKVKELAKKDDIDV--EIKHF------SDYNLPNKALNDGDIDMNAF 53 (255)
T ss_dssp HHHHHHHHGGGTCCE--EEEEC------SSTTSHHHHHHTTSSSEEEE
T ss_pred HHHHHHHHHHcCCEE--EEEEc------CCchhHHHHHHcCCCCEEcc
Confidence 566778899999884 45554 34888999999999999765
No 58
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}
Probab=47.50 E-value=13 Score=32.57 Aligned_cols=60 Identities=13% Similarity=0.250 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhc--CcEEEEcCCC--chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEe
Q 002301 84 LALAEALHLMEG--QTVAIIGPQD--AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRT 144 (940)
Q Consensus 84 ~a~~~a~~li~~--~v~aiiGp~~--s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~ 144 (940)
.+++.+.+++.+ +++.|+|... +.....+..+++..++|+++... ....-+..+|+|+-+
T Consensus 10 ~~v~~~~~~l~~AkrPvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~-gkg~i~e~~p~~~G~ 73 (175)
T d1zpda1 10 AAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAA-AKSFFPEENALYIGT 73 (175)
T ss_dssp HHHHHHHHHHTTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCCEEEEGG-GTTSSCTTSTTEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECcCccccchHHHHHHHHHhhceeEEeccc-cccCCCcccccccCC
Confidence 455666777776 8888998765 45677889999999999997543 333335667888754
No 59
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=47.10 E-value=24 Score=33.50 Aligned_cols=79 Identities=9% Similarity=0.052 Sum_probs=56.4
Q ss_pred eEEEEEEE--cCCcchhhHHHHHHHHhcC-ceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe-cCCcHHHHHHH
Q 002301 165 REVIAIYV--DDDHGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT-HYNRGPVVFHV 240 (940)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~-~~~~~~~~l~~ 240 (940)
.+|+++.. ++.|.....+.+.+++++. |+++.....- .+...-.+.++++.+.++|.|++.. ........+++
T Consensus 2 ~kIgv~~~~~~~~f~~~i~~gi~~~a~~~~~~~l~~~~~~---~~~~~q~~~i~~li~~~vDgiii~~~~~~~~~~~~~~ 78 (305)
T d2fvya1 2 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ---NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 78 (305)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcCC---CCHHHHHHHHHHHHHcCCCEEEeecccccccHHHHHH
Confidence 46788775 4677888889999888776 7777654321 2445566777777778999999885 44566667888
Q ss_pred HHHcCC
Q 002301 241 AQYLGM 246 (940)
Q Consensus 241 a~~~g~ 246 (940)
+.+.|.
T Consensus 79 ~~~~~i 84 (305)
T d2fvya1 79 ARGQNV 84 (305)
T ss_dssp HHTTTC
T ss_pred HHhcCC
Confidence 877664
No 60
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=46.60 E-value=14 Score=32.51 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhc--CcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEec
Q 002301 84 LALAEALHLMEG--QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTT 145 (940)
Q Consensus 84 ~a~~~a~~li~~--~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ 145 (940)
..++.+.+++.+ +.+.|+|.........+..+++.+++|+++....-..+ +..+|.++...
T Consensus 7 ~~i~~~~~~L~~AkrPvii~G~G~~~a~~~l~~lae~~~~Pv~tt~~~~g~~-~~~h~~~~G~~ 69 (179)
T d1ybha1 7 SHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGIPVASTLMGLGSY-PCDDELSLHML 69 (179)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHCCCEEECTTTTTSS-CTTSTTEEEEC
T ss_pred HHHHHHHHHHHhCCCeEEEECHHHHHHHHHHHHHHhhhcccceecccccCCC-ccccccccccC
Confidence 456777788876 89999997666666789999999999999743332223 34456666544
No 61
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.38 E-value=11 Score=33.26 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhc--CcEEEEcCCC--chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEe
Q 002301 84 LALAEALHLMEG--QTVAIIGPQD--AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRT 144 (940)
Q Consensus 84 ~a~~~a~~li~~--~v~aiiGp~~--s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~ 144 (940)
.+++.+.+++.+ +++.|+|... ......+..+++.+++|+++... ...+-+..+|.++-+
T Consensus 18 ~~i~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~-gkg~~~e~hp~~~G~ 81 (179)
T d1pvda1 18 EVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPM-GKGSISEQHPRYGGV 81 (179)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGTTTSTHHHHHHHHHHHCCCEEECGG-GTTSSCTTSTTEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEecccchhhhHHHHHHHHHhhCceEEeccc-ccccccccccccccc
Confidence 456677777755 8999999766 45678899999999999998433 333334566888765
No 62
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=42.41 E-value=3.5 Score=39.77 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=23.4
Q ss_pred CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeec
Q 002301 508 PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (940)
Q Consensus 508 ~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~ 545 (940)
++..+++++. ++...++.++.+|++|++..+
T Consensus 24 ~~~~~~~~~~-------~~p~~l~~al~~G~iDia~~~ 54 (277)
T d2nxoa1 24 GTLLDFELTK-------DTPEKLSEQLVRGDLDIGPVT 54 (277)
T ss_dssp SGGGGCEEEE-------ECHHHHHHHHHTTSCSEEEEE
T ss_pred CCCCceEEEE-------CCHHHHHHHHHcCCCCEEecC
Confidence 5555666654 457899999999999998654
No 63
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}
Probab=42.38 E-value=13 Score=34.59 Aligned_cols=71 Identities=15% Similarity=0.025 Sum_probs=45.7
Q ss_pred HHHHHHHHHhC-CCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEEeeceeeecCcceeeeeccccccccEEEEEeccC
Q 002301 497 IDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRK 575 (940)
Q Consensus 497 idll~~l~~~l-~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~v~ft~p~~~~~~~~vv~~~~ 575 (940)
-++.+...++. +.++.+.. +.-...+.+|.+|++|+++....++.+.....--..|+...++++++++..
T Consensus 16 ~~l~~~f~~~~p~~~v~v~~---------~gS~~~~~~l~~g~~di~~~s~~~~~~e~~~~~~~~~ia~d~lviiv~~~n 86 (249)
T d1twya_ 16 DVLAEKYNQQHPETYVAVQG---------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQAN 86 (249)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCEEEEEEEEEEEEEECTTC
T ss_pred HHHHHHHHHHCCCcEEEEEe---------CCcHHHHHHHHcCCCeeeecccchhhhhhhcceeeEEEEeecccccccccc
Confidence 34444555554 44544433 236778999999999999886666653222222345788899999998776
Q ss_pred C
Q 002301 576 L 576 (940)
Q Consensus 576 ~ 576 (940)
+
T Consensus 87 p 87 (249)
T d1twya_ 87 P 87 (249)
T ss_dssp C
T ss_pred c
Confidence 4
No 64
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=42.29 E-value=26 Score=31.48 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=48.8
Q ss_pred hhHhhhCCCCeEEEeCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEeC
Q 002301 687 IDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG 766 (940)
Q Consensus 687 i~dL~~~~~~i~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~~ 766 (940)
..|+. +.+|++.--.....||.+ .+.+ .+++...-.-|..-.+ |-.|++++-.....-+.++ +|.+++
T Consensus 104 ~~~l~--~~rIATkYpnit~~ff~~-~gi~-~~ii~~~Ga~E~ap~~------g~AD~IvDiv~TG~TLk~N--~L~~i~ 171 (210)
T d1nh8a1 104 TADLA--GMRIATAYPNLVRKDLAT-KGIE-ATVIRLDGAVEISVQL------GVADAIADVVGSGRTLSQH--DLVAFG 171 (210)
T ss_dssp GGGGT--TCEEEESCHHHHHHHHHH-HTCC-CEEEECSSCCTHHHHT------TSCSEEEEEESSSHHHHHT--TEEEEE
T ss_pred hhhhc--CCEEeeehHHHHHHHHHH-cCCc-eeEEEEecCccccccC------CcceEEEeeeccHHHHHHC--CCEEcc
Confidence 45554 678888877778888854 4554 4566655444444333 4567877755554443333 677776
Q ss_pred CccccCcceeecCC
Q 002301 767 QVFTKNGWGFAFPR 780 (940)
Q Consensus 767 ~~~~~~~~~~~~~k 780 (940)
+.+..+...++-++
T Consensus 172 ~~l~~S~a~ii~~~ 185 (210)
T d1nh8a1 172 EPLCDSEAVLIERA 185 (210)
T ss_dssp EEEEEECEEEEEEC
T ss_pred hhhhheeheeEecc
Confidence 65555555554444
No 65
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=41.69 E-value=39 Score=27.13 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=46.2
Q ss_pred EEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHHHcC
Q 002301 168 IAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQYLG 245 (940)
Q Consensus 168 ~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~~~g 245 (940)
.+|.+|+. .....+++.+++.|.++.... + -...+..++...+++|++. +...++..++++.++.+
T Consensus 6 ILIVDDd~---~~~~~l~~~L~~~g~~v~~a~------~---~~~a~~~l~~~~~dlii~D~~mp~~~G~el~~~l~~~~ 73 (123)
T d1krwa_ 6 VWVVDDDS---SIRWVLERALAGAGLTCTTFE------N---GNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRH 73 (123)
T ss_dssp EEEESSSH---HHHHHHHHHHHHTTCEEEEES------S---SHHHHHHHTTCCCSEEEECCSSSSSTTHHHHHHHHHHS
T ss_pred EEEEECCH---HHHHHHHHHHHHCCCEEEEeC------C---HHHHHHHHHhCCCCEEEehhhcCCchHHHHHHHHHHhC
Confidence 45555553 456777888888898876432 1 1356677778899999998 44467888898888765
Q ss_pred C
Q 002301 246 M 246 (940)
Q Consensus 246 ~ 246 (940)
-
T Consensus 74 ~ 74 (123)
T d1krwa_ 74 P 74 (123)
T ss_dssp S
T ss_pred C
Confidence 3
No 66
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=41.45 E-value=65 Score=25.70 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe--cCCcHHHHHHHHHHcCC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT--HYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~--~~~~~~~~l~~a~~~g~ 246 (940)
...+.++..|++.|.+|... . +-...+..+++..+++|++.. ...++..++++.++.+.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~a---~------~~~~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~~~ 74 (123)
T d1dbwa_ 14 PVRKSLAFMLTMNGFAVKMH---Q------SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKI 74 (123)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEEE---C------CHHHHHHHHhhcCCcEEEEeccCccccchHHHHHHHhcCC
Confidence 35666778888888876532 1 124566777888899999874 45678889999988654
No 67
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=40.68 E-value=12 Score=32.94 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhc--CcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEe
Q 002301 84 LALAEALHLMEG--QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRT 144 (940)
Q Consensus 84 ~a~~~a~~li~~--~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~ 144 (940)
..++.+.+++++ +++.|+|...-.....+..+++.+++|+++... ....-+..+|+++-+
T Consensus 9 ~~i~~~~~~l~~Ak~Pvii~G~g~~~a~~~l~~lae~l~~Pv~~t~~-~~g~ip~~hp~~~G~ 70 (177)
T d2djia1 9 QDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGK-NFETFEWDFEALTGS 70 (177)
T ss_dssp HHHHHHHHHHHTCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECTT-CGGGSCTTCTTBCCC
T ss_pred HHHHHHHHHHHhCCCEEEEECcChhhHHHHHHHhhhccceEEEeccc-ccccccccccccccc
Confidence 447788888877 889999976555556788999999999997433 222223345766644
No 68
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=40.11 E-value=12 Score=33.15 Aligned_cols=61 Identities=11% Similarity=0.274 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhc--CcEEEEcCCCchhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEec
Q 002301 84 LALAEALHLMEG--QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTT 145 (940)
Q Consensus 84 ~a~~~a~~li~~--~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ 145 (940)
..+..+.+++.+ +.+.|+|.........+..+++..++|+++....- .+-+..+|+++-+.
T Consensus 18 ~~i~~~~~~L~~A~rPvii~G~G~~~a~~~l~~lae~~~~Pv~tt~~~~-g~~~~~hp~~~G~~ 80 (183)
T d2ez9a1 18 QAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAK-GIVADRYPAYLGSA 80 (183)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGGT-TSSCTTCTTBCCCC
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCcccchHHHHHHhhccceEEEeecccc-ccccccCccccccc
Confidence 345666666665 89999998776667789999999999999743322 23334567766543
No 69
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=40.10 E-value=38 Score=32.76 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=50.8
Q ss_pred eEEEEEEEc---CCcchhhHHHHHHHHhcCceeEEEeecCC-CCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHH
Q 002301 165 REVIAIYVD---DDHGRNGIAALGDTLAAKRCRISFKAPLS-VEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 240 (940)
Q Consensus 165 ~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~ 240 (940)
.++++|+.+ ++|.......+.+.+.+.|........+. ...+...-...++.+.+.++|.||+..........+.+
T Consensus 41 ~~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g~~~~i~~~~~~s~~d~~~q~~~i~~~i~~~vDgIIi~~~~~~~~~~i~~ 120 (338)
T d1jx6a_ 41 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 120 (338)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCcccchHHHHH
Confidence 368888864 45778888999999999997655443333 11223334556677777899998876544445554444
Q ss_pred HHH
Q 002301 241 AQY 243 (940)
Q Consensus 241 a~~ 243 (940)
+.+
T Consensus 121 ~~~ 123 (338)
T d1jx6a_ 121 VLD 123 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 70
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}
Probab=39.47 E-value=11 Score=32.57 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhc--CcEEEEcCCC--chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEe
Q 002301 84 LALAEALHLMEG--QTVAIIGPQD--AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRT 144 (940)
Q Consensus 84 ~a~~~a~~li~~--~v~aiiGp~~--s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~ 144 (940)
.+.+++.+++.+ +++.++|..- +.....+..+++.+++|+++....-..+ +..+|.|+-+
T Consensus 17 a~~~~a~~~l~~AkrP~il~G~gv~~~~a~~~l~~l~e~~~iPv~tt~~gkg~i-~e~~p~~~G~ 80 (161)
T d1ovma1 17 AFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIF-DERQAGFYGT 80 (161)
T ss_dssp HHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSS-CTTSTTCCCC
T ss_pred HHHHHHHHHHHcCCCcEEEECcCcChhhhHHHHHHHHHhcCccEEEcCCcCCcc-cccccccccc
Confidence 345566667776 8888888655 3567789999999999999854333333 4445666554
No 71
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=38.82 E-value=65 Score=25.57 Aligned_cols=60 Identities=7% Similarity=-0.074 Sum_probs=43.3
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHHHcCCC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~~~g~~ 247 (940)
...+.+...|++.|..+.... +....+..+++..+++|++. +...++..+.++.++....
T Consensus 11 ~~~~~l~~~L~~~g~~v~~a~---------~~~~al~~l~~~~~dlil~D~~mp~~~G~~l~~~lr~~~~~ 72 (121)
T d1zesa1 11 PIREMVCFVLEQNGFQPVEAE---------DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMT 72 (121)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC---------SHHHHHHHSSSSCCSEEEECSSCTTSCHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHCCCEEEEEC---------ChHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHhCccC
Confidence 456777888888898765421 23466777788899999987 4456788888888875443
No 72
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=37.52 E-value=1e+02 Score=25.21 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=46.1
Q ss_pred CeEEEEEEEcCCcch--hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec------CCcHH
Q 002301 164 WREVIAIYVDDDHGR--NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH------YNRGP 235 (940)
Q Consensus 164 w~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~------~~~~~ 235 (940)
-.++.|||.. .+|. ..++.+.+.+++.|+.+.....-. .. .......+. +.|.||+.+. +....
T Consensus 2 k~K~lIvY~S-~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~--~~---~~~~~~~~~--~~d~ii~Gspt~~g~~~~~~~ 73 (149)
T d1ycga1 2 KAKAVIAYDT-MWLSTEKMAHALMDGLVAGGCEVKLFKLSV--SD---RNDVIKEIL--DARAVLVGSPTINNDILPVVS 73 (149)
T ss_dssp CSEEEEEECC-SSSHHHHHHHHHHHHHHHTTCEEEEEEGGG--SC---HHHHHHHHH--HCSEEEEECCCBTTBCCGGGH
T ss_pred CcEEEEEEEC-CCcHHHHHHHHHHHHHHhcCCeeEEEEccc--cc---hHHHhhhhh--hCCeEEEEeecccCCCCHHHH
Confidence 3578888843 3444 668889999999998766433222 22 233334444 3678887754 24556
Q ss_pred HHHHHHHHcCCC
Q 002301 236 VVFHVAQYLGML 247 (940)
Q Consensus 236 ~~l~~a~~~g~~ 247 (940)
.++.........
T Consensus 74 ~~l~~l~~~~~~ 85 (149)
T d1ycga1 74 PLLDDLVGLRPK 85 (149)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHhccccC
Confidence 777776665543
No 73
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]}
Probab=36.63 E-value=1.1e+02 Score=26.60 Aligned_cols=85 Identities=8% Similarity=-0.096 Sum_probs=48.5
Q ss_pred CcccCCCHHHHHHHhhcCCCCCceEEEEechhhHHHHHhcCCcEEEe-CC-ccccCcceeecCCCCcchHHHHHHHHhcc
Q 002301 719 RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIV-GQ-VFTKNGWGFAFPRDSPLAVDISTAILKLS 796 (940)
Q Consensus 719 ~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~k~spl~~~~~~~il~l~ 796 (940)
+.+...+..+....+.. |+.++.+...........+......+ .+ ......+.+++.|+++=.+.-...|.-|.
T Consensus 139 ~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~A~~Fidfl~ 214 (231)
T d1atga_ 139 RIVEANSVGQAHSQTAS----GAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMK 214 (231)
T ss_dssp CEEEESSHHHHHHHHHT----TSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHHHHHHHHHHTT
T ss_pred eeeeccccchhhHHhhc----cchhhhhhHHHHHHHhhccccceeeeecCCCceeeeeeEEEECCCCCHHHHHHHHHHHC
Confidence 34555677888888888 77776665544333222333333333 22 22233467888899986666556665554
Q ss_pred cccchHHHHHhh
Q 002301 797 ENGDLQRIHDKW 808 (940)
Q Consensus 797 e~G~~~~i~~kw 808 (940)
.. .-+++..++
T Consensus 215 S~-e~Q~i~~~~ 225 (231)
T d1atga_ 215 GP-KAVAIIKAA 225 (231)
T ss_dssp SH-HHHHHHHHT
T ss_pred CH-HHHHHHHHh
Confidence 44 346665554
No 74
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.38 E-value=25 Score=30.42 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=38.5
Q ss_pred HHHHHHhc--CcEEEEcCCC---chhHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEec
Q 002301 88 EALHLMEG--QTVAIIGPQD---AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTT 145 (940)
Q Consensus 88 ~a~~li~~--~v~aiiGp~~---s~~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~ 145 (940)
.|.+++.+ +.+.|+|.+. +.....+..+++.+++|+++.......+ +...|+++...
T Consensus 2 kaa~lL~~AkrPvii~G~G~~~~~~a~~~l~~lae~~g~Pv~tt~~~~g~~-~~~hp~~~G~~ 63 (171)
T d1t9ba1 2 KAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSF-DQEDPKSLDML 63 (171)
T ss_dssp HHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSS-CTTSTTEEEEC
T ss_pred HHHHHHHHCCCeEEEECcChhhhhhHHHHHHHHHHhcCCceeecccccccc-cCCcccccccc
Confidence 35566665 8999999643 3455678899999999999754433333 34457776543
No 75
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=36.34 E-value=89 Score=24.70 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHHHcCCC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQYLGML 247 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~~~g~~ 247 (940)
...+.+.+.|++.|.+|.... + -...+..+++..+++|++. +...++..++++.++.+-.
T Consensus 12 ~~~~~l~~~L~~~g~~v~~a~------~---~~eal~~~~~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~ 73 (121)
T d1ys7a2 12 DVLASLERGLRLSGFEVATAV------D---GAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDND 73 (121)
T ss_dssp HHHHHHHHHHHHTTCEEEEES------S---HHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCEEEEEC------C---HHHHHHHHHhCCCCEEEEEeeccCcccHHHHHHHHhcCCC
Confidence 456778888888898776421 2 2355667777889999998 4456788999999887643
No 76
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=36.20 E-value=99 Score=25.42 Aligned_cols=76 Identities=8% Similarity=0.112 Sum_probs=44.2
Q ss_pred eEEEEEEEc-CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC------CcHHHH
Q 002301 165 REVIAIYVD-DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY------NRGPVV 237 (940)
Q Consensus 165 ~~v~ii~~d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~------~~~~~~ 237 (940)
++|.|||.. ....+..++.+.+.+.+.|+++.....- ..+.......+. +.|.|++.+.. .....+
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~-----~~~~~~~~~~l~--~~d~vi~Gspt~~~~~~~~~~~~ 75 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK-----ACHHSQIMSEIS--DAGAVIVGSPTHNNGILPYVAGT 75 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT-----TSCHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHHH
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecc-----cCChhhhccchh--hCCEEEEeccccCCccCchhHHH
Confidence 578899843 3333456788899999999877643221 222333444444 46777776543 234556
Q ss_pred HHHHHHcCCC
Q 002301 238 FHVAQYLGML 247 (940)
Q Consensus 238 l~~a~~~g~~ 247 (940)
+.........
T Consensus 76 l~~~~~~~~~ 85 (152)
T d1e5da1 76 LQYIKGLRPQ 85 (152)
T ss_dssp HHHHHHTCCC
T ss_pred HHHhhccCCC
Confidence 6655554443
No 77
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=35.66 E-value=61 Score=26.57 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=41.6
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHHHcCC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~~~g~ 246 (940)
.....+...++..|..+... . +-...+..++...+++|++. +..-++..++++.++.+-
T Consensus 11 ~~~~~l~~~L~~~g~~v~~~---~------~~~~al~~l~~~~~dlil~D~~mP~~~G~el~~~lr~~~~ 71 (140)
T d1qkka_ 11 DLRKAMQQTLELAGFTVSSF---A------SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDP 71 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCEEEEe---C------ChHHHHHHHhccCcchHHHhhccCCCCHHHHHHHHHHhCC
Confidence 45667777888888777642 1 22456677777889999987 444677888888888664
No 78
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.37 E-value=32 Score=31.71 Aligned_cols=66 Identities=6% Similarity=-0.026 Sum_probs=49.5
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCc
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR 233 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~ 233 (940)
|-|++|.++ +.+....++.+.+.++++|..+..... ..+.+.....++.+...+.|.||+......
T Consensus 3 k~Igvi~p~~~~~~~~~~~~~i~~~~~~~Gy~~~~~~s---~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~ 70 (255)
T d1byka_ 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES---QFSPQLVAEHLGVLKRRNIDGVVLFGFTGI 70 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhccccceeeccccch
Confidence 568888864 556667899999999999988765432 235566677888898899999998755433
No 79
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Probab=35.18 E-value=72 Score=27.27 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=47.8
Q ss_pred HcCCeEEEEEEEcCCcch---hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHH-hcCCCeEEEEEecC
Q 002301 161 HYGWREVIAIYVDDDHGR---NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-ALTESRIIVVHTHY 231 (940)
Q Consensus 161 ~~~w~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l-~~~~~~viv~~~~~ 231 (940)
+|.--+|++|...|.-|. ..-..+.+.+++.|.++.....++ .+...+...+.+. ...+.|+|+..+..
T Consensus 5 ~f~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~--Dd~~~~~~~l~~~~~~~~~dlIiTtGGt 77 (170)
T d1mkza_ 5 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVK--ENRYAIRAQVSAWIASDDVQVVLITGGT 77 (170)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CcCCceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeC--CCHHHHHHHHHhhhhcccceEEEEeeee
Confidence 455568888886554333 345678889999999998777776 4566666666654 45678998886443
No 80
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=35.10 E-value=7.4 Score=35.55 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=28.4
Q ss_pred CcEEEEcCCCchhHHHHHHhhccCCccEEeee
Q 002301 96 QTVAIIGPQDAVTSHVVSHVANELQVPLLSFS 127 (940)
Q Consensus 96 ~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~ 127 (940)
.|.+|.||..|+-......+++++++|+||.+
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~gl~~iStG 35 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSG 35 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEECHH
Confidence 36788899999999999999999999999853
No 81
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=34.99 E-value=88 Score=24.59 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CCcHHHHHHHHHHcCC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLGM 246 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~~~~~~l~~a~~~g~ 246 (940)
...+.++..+++.|.++.... ++-...++.+++..+|+|++... ..++..++++.++.+-
T Consensus 12 ~~~~~l~~~L~~~g~~v~~~a--------~~~~~al~~~~~~~~dliilD~~mp~~~G~e~~~~ir~~~~ 73 (118)
T d1u0sy_ 12 FMRMMLKDIITKAGYEVAGEA--------TNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDP 73 (118)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE--------SSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCceEEEE--------CCHHHHHHHHHhccCCEEEEecCCCCCCHHHHHHHHHHhCC
Confidence 456667777888888765321 12245566666778999998743 4677788888887653
No 82
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=34.91 E-value=74 Score=25.23 Aligned_cols=69 Identities=14% Similarity=0.059 Sum_probs=45.8
Q ss_pred eEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHH
Q 002301 165 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQ 242 (940)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~ 242 (940)
|+| +|.+|+. ...+.+.+.|++.|.++... . +. ...+..+++..+++|++. +..-++..+.++.+
T Consensus 2 krI-LiVDD~~---~~~~~l~~~L~~~g~~v~~a---~---~~---~~al~~~~~~~~dlil~D~~mp~~dG~el~~~ir 68 (123)
T d1mb3a_ 2 KKV-LIVEDNE---LNMKLFHDLLEAQGYETLQT---R---EG---LSALSIARENKPDLILMDIQLPEISGLEVTKWLK 68 (123)
T ss_dssp CEE-EEECSCH---HHHHHHHHHHHHTTCEEEEE---S---CH---HHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHH
T ss_pred ceE-EEEECCH---HHHHHHHHHHHHCCCEEEEE---C---CH---HHHHHHHHhCCCCEEEEEeccCCCcHHHHHHHHH
Confidence 344 4555554 34667778888889887632 1 22 344556666789999998 44567889999998
Q ss_pred HcCC
Q 002301 243 YLGM 246 (940)
Q Consensus 243 ~~g~ 246 (940)
+...
T Consensus 69 ~~~~ 72 (123)
T d1mb3a_ 69 EDDD 72 (123)
T ss_dssp HSTT
T ss_pred hCCC
Confidence 7653
No 83
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=33.07 E-value=23 Score=30.29 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHHHHHHhc--CcEEEEcCCCchhHHHHHHhhccCCccEEeee
Q 002301 86 LAEALHLMEG--QTVAIIGPQDAVTSHVVSHVANELQVPLLSFS 127 (940)
Q Consensus 86 ~~~a~~li~~--~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~ 127 (940)
.+.+.+++++ +.+.++|+........+...+...++|+++..
T Consensus 9 ~~~~a~~i~~AkrPvii~G~g~~~~~~e~~~~~~~~~ipv~~T~ 52 (158)
T d1ytla1 9 GKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATG 52 (158)
T ss_dssp HHHHHHHHHHCSSEEEEECSCCCHHHHHHHHHHHTSSSEEEEET
T ss_pred HHHHHHHHHhCCCCEEEECcChHHhHHHHHHHHHHhCcCEEecc
Confidence 3456667765 89999999998777778888999999999753
No 84
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]}
Probab=33.02 E-value=38 Score=29.66 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=54.5
Q ss_pred CeEEE--eCchHHHHHHhhhCCCccCcccCCCHHHHHHHhhcCCCCCceEEEEech---------hhHHHHHhcCCcEEE
Q 002301 696 PIGYQ--VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDR---------AYAELFLSTRCEFSI 764 (940)
Q Consensus 696 ~i~~~--~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~---------~~~~~~~~~~~~l~~ 764 (940)
+|+|+ .|+|.+.-..+..+.....++++.+.++.++++.+ |..|..+... ..++.+... ++.+
T Consensus 2 ki~yLGp~GtfS~~Aa~~~f~~~~~~~~~~~s~~~v~~av~~----~~~d~gvvPiENS~~G~V~~t~D~L~~~--~~~I 75 (184)
T d2qmwa1 2 QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVAD----DDTSIGVVPIENSIEGTINIVADALAQQ--DVFA 75 (184)
T ss_dssp EEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHH----CSSEEEEEEEESCSSSCSHHHHHHHHTT--SSEE
T ss_pred EEEEeCCCChHHHHHHHHhcccCCceeeecCCHHHHHHHHHc----CCCceeEEEeecccccchHHHHHhhhcc--Ccee
Confidence 46665 68887776655544444567788999999999999 6766544431 234544433 6788
Q ss_pred eCCccccCcceeecCCCCc
Q 002301 765 VGQVFTKNGWGFAFPRDSP 783 (940)
Q Consensus 765 ~~~~~~~~~~~~~~~k~sp 783 (940)
+++...+....+...++..
T Consensus 76 ~~E~~l~I~h~Ll~~~~~~ 94 (184)
T d2qmwa1 76 HGEIRLDINFALYGNGTDS 94 (184)
T ss_dssp EEEEEEECCEEEECCSSCC
T ss_pred Eeeecccchhhhccccccc
Confidence 8888777777766555543
No 85
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=32.94 E-value=82 Score=25.64 Aligned_cols=65 Identities=17% Similarity=0.050 Sum_probs=42.2
Q ss_pred EEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec--CCcHHHHHHHHHHcC
Q 002301 169 AIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 245 (940)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~--~~~~~~~l~~a~~~g 245 (940)
+|.+|+. ...+.+...|++.|.+|.... + -...+..++...+|+|++... ..++..+++..++..
T Consensus 5 LiVDD~~---~~~~~l~~~L~~~g~~v~~a~------~---~~eal~~~~~~~~dlil~D~~~p~~~G~~~~~~ir~~~ 71 (139)
T d1w25a1 5 LVVDDIE---ANVRLLEAKLTAEYYEVSTAM------D---GPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDP 71 (139)
T ss_dssp EEECSST---THHHHHHHHHHHTTCEEEEES------S---HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred EEEECCH---HHHHHHHHHHHHCCCEEEEEc------c---chhhhhhhhcccceeeeeeccccCCCchHHHHHhhhcc
Confidence 3444444 356677788888888775321 2 235556666678999999843 456778888777654
No 86
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=32.52 E-value=1.1e+02 Score=24.10 Aligned_cols=59 Identities=5% Similarity=0.030 Sum_probs=42.4
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHHHcCC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~~~g~ 246 (940)
...+.+++.|++.|..|... . + ....+..++...+++|++. +...++..++++.++.+-
T Consensus 12 ~~~~~l~~~L~~~g~~v~~a---~---~---~~~al~~l~~~~~dlillD~~mp~~~g~~~~~~lr~~~~ 72 (122)
T d1kgsa2 12 DLADLITEALKKEMFTVDVC---Y---D---GEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGV 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S---S---HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEEE---c---c---hHHHHHHHHhhCccccccccccccchhHHHHHHHHhcCC
Confidence 45677788888889887643 1 2 2355666777899999997 445678888888887654
No 87
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.37 E-value=1.2e+02 Score=24.40 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=42.5
Q ss_pred EEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe--cCCcHHHHHHHHHHcCC
Q 002301 169 AIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT--HYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~--~~~~~~~~l~~a~~~g~ 246 (940)
+|.+|+. .....+...++..|.++.... +. ...+..++...+++|++.. ...++..++++.++.+.
T Consensus 12 LiVDD~~---~~~~~l~~~L~~~g~~v~~a~------~g---~ea~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~ 79 (133)
T d2ayxa1 12 LVVDDHP---INRRLLADQLGSLGYQCKTAN------DG---VDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGL 79 (133)
T ss_dssp EEEESSH---HHHHHHHHHHHHHTSEEEEEC------CS---HHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHC
T ss_pred EEEECCH---HHHHHHHHHHHHcCCEEEEEC------cH---HHHHHHHhccCceEEEEeccCCCCCHHHHHHHHHHhCC
Confidence 4445554 345666677778888765321 11 2345556667899999874 44577788888887664
Q ss_pred C
Q 002301 247 L 247 (940)
Q Consensus 247 ~ 247 (940)
.
T Consensus 80 ~ 80 (133)
T d2ayxa1 80 T 80 (133)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=32.15 E-value=14 Score=32.87 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=30.1
Q ss_pred HHhcCcEEEEcCCCchhHHHHHHhhccCCccEEee
Q 002301 92 LMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (940)
Q Consensus 92 li~~~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~ 126 (940)
+-+.++..|+||..|+=+.....+++.++.++|+.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~ 39 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 39 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEec
Confidence 33448899999999998888889999999999975
No 89
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=31.96 E-value=60 Score=29.85 Aligned_cols=85 Identities=13% Similarity=0.000 Sum_probs=57.8
Q ss_pred eEEEEEEEc--CCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHH
Q 002301 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 242 (940)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~ 242 (940)
+.|++|.++ +.|....+..+.+++++.|.++.....- .+...-...+..+...+++.+|+......-. ....+.
T Consensus 4 ~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~e~~~i~~~~~~~vdgii~~~~~~~~~-~~~~l~ 79 (275)
T d2nzug1 4 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSD---QNQDKELHLLNNMLGKQVDGIIFMSGNVTEE-HVEELK 79 (275)
T ss_dssp SEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHTTCCSEEEECCSCCCHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC---CCHHHHHHHHHHHHhcCCceeeccccchhhH-HHHHHh
Confidence 568888864 6677888999999999999987653222 2445556777777888899998876554433 344556
Q ss_pred HcCCCCCCeEEEec
Q 002301 243 YLGMLGTGYVWIAT 256 (940)
Q Consensus 243 ~~g~~~~~~~wi~~ 256 (940)
+.+. ..+++..
T Consensus 80 ~~~~---pvv~~~~ 90 (275)
T d2nzug1 80 KSPV---PVVLAAS 90 (275)
T ss_dssp HCSS---CEEEESC
T ss_pred hccc---ccccccc
Confidence 5553 3555543
No 90
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.55 E-value=76 Score=26.83 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=41.7
Q ss_pred EEEEEEEcCC-----cchhhHHHHHHHHhcC-----ceeEEEeecCCCCCChhHHHHHHHHHhc-CCCeEEEEEec
Q 002301 166 EVIAIYVDDD-----HGRNGIAALGDTLAAK-----RCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTH 230 (940)
Q Consensus 166 ~v~ii~~d~~-----~g~~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viv~~~~ 230 (940)
++++|...|+ .-......+.+.+.+. |.++.....++ .+.+.+.+.+.++.+ .+.|+||..+.
T Consensus 5 rvaIitvsD~~~~G~~~D~~G~~l~~~l~~~~~~~~G~~v~~~~ivp--Dd~~~I~~~l~~~~~~~~~D~IittGG 78 (161)
T d1uuya_ 5 KVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVP--DEVERIKDILQKWSDVDEMDLILTLGG 78 (161)
T ss_dssp EEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEECCCCCCCCcCCCchHHHHHHHHhhccccCCcEEEEEEEEC--CCHHHHHHHHHHhhhcCCceEEEEecC
Confidence 5677764432 1112234455555443 88998888888 678889999988654 57899988754
No 91
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=31.23 E-value=1.1e+02 Score=24.07 Aligned_cols=66 Identities=8% Similarity=-0.057 Sum_probs=44.1
Q ss_pred EEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe--cCCcHHHHHHHHHHcCC
Q 002301 169 AIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT--HYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~--~~~~~~~~l~~a~~~g~ 246 (940)
+|.+|+. .....++..++..|.+|.... + -...+..+++..+++|++.. ...++..++++.++.+-
T Consensus 4 LvVDDd~---~~~~~l~~~L~~~G~~v~~a~------~---g~eal~~l~~~~~dliilD~~mP~~~G~e~~~~i~~~~~ 71 (119)
T d2pl1a1 4 LVVEDNA---LLRHHLKVQIQDAGHQVDDAE------D---AKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDV 71 (119)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEEES------S---HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTC
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEEEC------C---HHHHHHHHHhcccceeehhccCCCchhHHHHHHHHhcCc
Confidence 4444544 356677778888888766421 2 23556666778899999874 35667888888887653
No 92
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=27.52 E-value=1.1e+02 Score=27.84 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCC
Q 002301 147 SDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE 221 (940)
Q Consensus 147 sd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~ 221 (940)
...-.+.++++.+.+-|+++|+++.-+ .-.....+.+.+++++.|.++.+... .. .+.+++...+..+.+..
T Consensus 17 gs~GIG~a~a~~la~~Ga~~vvl~~R~-~~~~~~~~~~~~~l~~~g~~v~~~~~-Dv-~d~~~~~~~~~~i~~~~ 88 (259)
T d2fr1a1 17 GTGGVGGQIARWLARRGAPHLLLVSRS-GPDADGAGELVAELEALGARTTVAAC-DV-TDRESVRELLGGIGDDV 88 (259)
T ss_dssp TTSHHHHHHHHHHHHHTCSEEEEEESS-GGGSTTHHHHHHHHHHTTCEEEEEEC-CT-TCHHHHHHHHHTSCTTS
T ss_pred CCcHHHHHHHHHHHHCCCCEEEEEeCC-ccCHHHHHHHHHHHHhcccccccccc-cc-chHHHHHHhhccccccc
Confidence 334678899988888899888766522 11223455666667777777665432 21 35566777777766543
No 93
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=27.31 E-value=89 Score=25.34 Aligned_cols=59 Identities=7% Similarity=-0.023 Sum_probs=40.6
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHHHcCC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~~~g~ 246 (940)
.....++..++..|.+|.... + ....+..++...+++|++. +...++..++++.++.+-
T Consensus 11 ~~~~~l~~~L~~~g~~v~~a~------~---~~eAl~~l~~~~~dlvilD~~mp~~~G~e~~~~lr~~~~ 71 (137)
T d1ny5a1 11 VFRGLLEEYLSMKGIKVESAE------R---GKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSP 71 (137)
T ss_dssp HHHHHHHHHHHHHTCEEEEES------S---HHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCEEEEEC------C---HHHHHHHhhccccccchHHHhhhhhhHHHHHHHHHHhCC
Confidence 456667777888888765321 2 2355666666789999987 555678888888887653
No 94
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=26.72 E-value=22 Score=30.97 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhc--CcEEEEcCCC--chhHHHHHHhhccCCccEEee
Q 002301 84 LALAEALHLMEG--QTVAIIGPQD--AVTSHVVSHVANELQVPLLSF 126 (940)
Q Consensus 84 ~a~~~a~~li~~--~v~aiiGp~~--s~~a~~va~~~~~~~vP~Is~ 126 (940)
..+..+.+++.+ +.+.|+|... +.....+..+++.+++|+++.
T Consensus 7 ~~l~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t 53 (175)
T d2ji7a1 7 DAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPM 53 (175)
T ss_dssp HHHHHHHHHHHTCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccccccHHHHHHHhhhceeeeecc
Confidence 457777888876 8999999754 355678999999999999974
No 95
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=26.12 E-value=1.4e+02 Score=23.29 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=44.5
Q ss_pred EEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe--cCCcHHHHHHHHHHcCC
Q 002301 169 AIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT--HYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~--~~~~~~~~l~~a~~~g~ 246 (940)
+|.+|+. ...+.+.+.|++.|.+|.... +. ...+..++...+|+|++.. ...++..++++.++.+-
T Consensus 6 LiVDDd~---~~~~~l~~~L~~~g~~v~~a~------~~---~~al~~l~~~~~dlillD~~mp~~~G~~~~~~~r~~~~ 73 (121)
T d1mvoa_ 6 LVVDDEE---SIVTLLQYNLERSGYDVITAS------DG---EEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKL 73 (121)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEEES------SH---HHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTC
T ss_pred EEEECCH---HHHHHHHHHHHHCCCEEEEEC------CH---HHHHHHHhcccccEEEecccccCCCCchhhhhhhccCC
Confidence 4444543 456778888888998876421 22 3455666667899999984 44568888888887653
No 96
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=26.02 E-value=1.5e+02 Score=23.48 Aligned_cols=58 Identities=10% Similarity=0.006 Sum_probs=36.1
Q ss_pred hHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHHHcC
Q 002301 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQYLG 245 (940)
Q Consensus 180 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~~~g 245 (940)
..+.+++.|++.|...+.. . .+-...+..++...+++|++. +...++..++++.++..
T Consensus 16 ~r~~i~~~L~~~g~~~v~~--a------~~g~~a~~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~ 75 (128)
T d1jbea_ 16 MRRIVRNLLKELGFNNVEE--A------EDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADG 75 (128)
T ss_dssp HHHHHHHHHHHTTCCCEEE--E------SSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCcEEEE--e------cCchHHHHHHhcCCCCEEEEecccccCCHHHHHHHHHhCc
Confidence 4455666677777642211 1 122355667777889999987 44567888888887654
No 97
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.68 E-value=17 Score=32.27 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=28.3
Q ss_pred CcEEEEcCCCchhHHHHHHhhccCCccEEee
Q 002301 96 QTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (940)
Q Consensus 96 ~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~ 126 (940)
.|.+|+||..|+-+.....+++.+++++|+.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is~ 39 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEeh
Confidence 5788999999999999999999999999985
No 98
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.93 E-value=1e+02 Score=25.72 Aligned_cols=60 Identities=8% Similarity=-0.016 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC-CcHHHHHHHHHH
Q 002301 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVAQY 243 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~-~~~~~~l~~a~~ 243 (940)
...+...+++.|+++.....++ .+.+.+...+++..+ +.|+||..+.. ....++...+.+
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~l~~~~~-~~DliittGG~s~g~~D~~~~~l~ 89 (155)
T d2ftsa3 29 RSTLLATIQEHGYPTINLGIVG--DNPDDLLNALNEGIS-RADVIITSGGVSMGEKDYLKQVLD 89 (155)
T ss_dssp HHHHHHHHHTTTCCEEEEEEEC--SSHHHHHHHHHHHHH-HCSEEEEESCCSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccccceEEEEEec--CchhHHHHHHHHhhc-ccCEEEEeccccCCcchhhHHHHH
Confidence 5668888999999998887777 677788888877653 57898887443 445567666655
No 99
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=22.83 E-value=92 Score=25.46 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=49.0
Q ss_pred eEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCC----cHHHHHHH
Q 002301 165 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN----RGPVVFHV 240 (940)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~----~~~~~l~~ 240 (940)
++|.+-....+.-.-+..-+...|+..|++|.+--... . ...+++.+++.++|+|.+..... ....+..+
T Consensus 4 ~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~---p---~e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~~~~ 77 (137)
T d1ccwa_ 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS---P---QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQK 77 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE---C---HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHH
T ss_pred CEEEEEecCCChhHHHHHHHHHHHHHCCCeEEeccccc---C---HHHHHHHHHhcCCCEEEEeeccccchHHHHHHHHH
Confidence 45555445555555567778888999999998754321 1 23556666677899999986543 34445666
Q ss_pred HHHcCC
Q 002301 241 AQYLGM 246 (940)
Q Consensus 241 a~~~g~ 246 (940)
.++.++
T Consensus 78 l~~~~~ 83 (137)
T d1ccwa_ 78 CDEAGL 83 (137)
T ss_dssp HHHTTC
T ss_pred HHHhcc
Confidence 666665
No 100
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=22.41 E-value=93 Score=24.47 Aligned_cols=58 Identities=7% Similarity=0.012 Sum_probs=37.9
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe--cCCcHHHHHHHHHHcC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT--HYNRGPVVFHVAQYLG 245 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~--~~~~~~~~l~~a~~~g 245 (940)
.....++..+++.|.++... . + -...+..++...+++|++.. ..-++..++++.++..
T Consensus 12 ~~~~~l~~~L~~~g~~v~~a---~---~---g~eal~~~~~~~~dlillD~~mP~~~G~el~~~lr~~~ 71 (119)
T d1peya_ 12 GIRILLNEVFNKEGYQTFQA---A---N---GLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S---S---HHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCEEEEe---C---C---HHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHhC
Confidence 35666777788888776532 1 2 22445556666788888873 4566778888887765
No 101
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=22.27 E-value=17 Score=32.22 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=27.7
Q ss_pred CcEEEEcCCCchhHHHHHHhhccCCccEEee
Q 002301 96 QTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (940)
Q Consensus 96 ~v~aiiGp~~s~~a~~va~~~~~~~vP~Is~ 126 (940)
.+++|+||..|+-+.....+++.++++.|+.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~ 37 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence 4788999999999988899999999999974
No 102
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=22.24 E-value=36 Score=29.11 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEec
Q 002301 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~ 230 (940)
.+.+.+.+.+.|+++.....++ .+.+.+...+.+..+.++|+||..+.
T Consensus 28 ~~~L~~~l~~~G~~v~~~~iv~--D~~~~i~~~~~~a~~~~~DlVittGG 75 (163)
T d2g2ca1 28 QRLMSDELQDYSYELISEVVVP--EGYDTVVEAIATALKQGARFIITAGG 75 (163)
T ss_dssp HHHHCC----CEEEEEEEEEEC--SSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred HHHHHHHHHhCCeEEEEEEeec--chHHHHHHHHHhhhccCCCEEEecCC
Confidence 3444445667799998887777 56777888888866667999998854
No 103
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=22.12 E-value=41 Score=23.78 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=37.0
Q ss_pred CCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCC---CChhHHHHHHHHHhcCCCeE
Q 002301 163 GWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE---ATEDEITDLLVKVALTESRI 224 (940)
Q Consensus 163 ~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~---~~~~~~~~~l~~l~~~~~~v 224 (940)
||+-+-+-..-+-...+....+...|++.|+.+-....+..+ ...++....++-+++.+-.+
T Consensus 1 GWr~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~~D~ilVp~~~~~~A~~~L~~~g~~v 65 (66)
T d1zhva2 1 GWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLLVRSNDLEKTADLLANAGHSL 65 (66)
T ss_dssp EEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred CeEEEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeeeccEEEEEHHHHHHHHHHHHHccCEe
Confidence 566655422222223456889999999999988777777532 22345555555555554443
No 104
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]}
Probab=21.81 E-value=2.6e+02 Score=25.48 Aligned_cols=156 Identities=16% Similarity=0.059 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCcEEEEcCCCch---hHHHHHHhhccCCccEEeeecCCCCCCCCCCCceEEecCChHHHHHHHHHHHH-
Q 002301 85 ALAEALHLMEGQTVAIIGPQDAV---TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD- 160 (940)
Q Consensus 85 a~~~a~~li~~~v~aiiGp~~s~---~a~~va~~~~~~~vP~Is~~at~~~ls~~~~p~~~r~~psd~~~~~ai~~~l~- 160 (940)
..+...++.+.+|..++-+.++. ....+..++.++++.++...+..|.- .+|.-+... +.....+.+.+-+.
T Consensus 35 ~~~~l~~~~~~Gv~~iV~~t~~~~g~d~~~~~~la~~~~~~i~~~~G~hp~~---~~p~~~~~~-~~~~~~~~~~~~i~~ 110 (291)
T d1bf6a_ 35 ICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDA---FFPEHVATR-SVQELAQEMVDEIEQ 110 (291)
T ss_dssp HHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCGG---GCCTHHHHS-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccccCHHHHHHHHHHcCCCeeeeeeecCcc---cCCcccCcC-CHHHHHHHHHHHHHH
Confidence 33444555566999888654432 24566677888888777654444421 122222211 22233333333332
Q ss_pred HcC--CeEEEEEEE--cCCcc--hhhHHHHHHHH---hcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC
Q 002301 161 HYG--WREVIAIYV--DDDHG--RNGIAALGDTL---AAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (940)
Q Consensus 161 ~~~--w~~v~ii~~--d~~~g--~~~~~~l~~~l---~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~ 231 (940)
..+ -.++++|.+ .+.|. ....+.|+..+ .+.|..|..-..-. ....+....|.+......++++.||..
T Consensus 111 ~~~~~~~~~~~IGe~g~d~~~~~~~q~~~f~~~~~~A~~~~lPv~iH~r~~--~~~~e~~~~l~~~~~~~~~~~~~H~~f 188 (291)
T d1bf6a_ 111 GIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFS--TMGLEQLALLQAHGVDLSRVTVGHCDL 188 (291)
T ss_dssp CSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGG--CSHHHHHHHHHHTTCCGGGEEECCCCS
T ss_pred HHhccCceEEEEEeeccccCCCCHHHHHHHHHHHHHHHHhCCCeEEeccch--hhhHHHHHHHHHhCCCcccceecccCC
Confidence 221 233444432 12121 12223344433 45677776543222 122244455555444456677778855
Q ss_pred CcHHHHHHHHHHcCC
Q 002301 232 NRGPVVFHVAQYLGM 246 (940)
Q Consensus 232 ~~~~~~l~~a~~~g~ 246 (940)
......++++.++|.
T Consensus 189 ~~~~e~~~~~~~~G~ 203 (291)
T d1bf6a_ 189 KDNLDNILKMIDLGA 203 (291)
T ss_dssp SCCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHhcCe
Confidence 555678888888773
No 105
>d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein ProX {Escherichia coli [TaxId: 562]}
Probab=21.70 E-value=38 Score=32.34 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=43.5
Q ss_pred ccCCCceEEEEecCcccccceEEeCCCcceeeeeHHHHHHHHHhCCCccCeEEeeCCCCCCCCCHhHHHHHHHcCcccEE
Q 002301 463 FPNNGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAA 542 (940)
Q Consensus 463 ~~~~g~~l~v~v~~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~g~~Di~ 542 (940)
.|.+|.+++|+-. +|.. .-+.-+|+..+.+.+|++++.... .+..-+...+.+|++|+.
T Consensus 3 ~p~~~~ti~~~~~---~wte----------~~i~~ei~~q~Le~~Gy~V~~~~~--------~~~~~~~~al~~GdiDv~ 61 (309)
T d1r9la_ 3 LPGKGITVNPVQS---TITE----------ETFQTLLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFT 61 (309)
T ss_dssp CTTTTCEECEEEC---SCGG----------GHHHHHHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEE
T ss_pred CCCCCCEEEEecC---CccH----------HHHHHHHHHHHHHHcCCceeeecC--------CChHHHHHHHHcCCCeEE
Confidence 3567788888876 4432 245568888899999999653222 335667899999999987
Q ss_pred ee
Q 002301 543 VG 544 (940)
Q Consensus 543 ~~ 544 (940)
.-
T Consensus 62 ~E 63 (309)
T d1r9la_ 62 AV 63 (309)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 106
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=21.59 E-value=1e+02 Score=26.18 Aligned_cols=76 Identities=11% Similarity=0.132 Sum_probs=51.6
Q ss_pred eEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC----CcHHHHHHH
Q 002301 165 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY----NRGPVVFHV 240 (940)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~----~~~~~~l~~ 240 (940)
-+|.+-....+.-..+...+...|+..|.+|.+-.... ..+ ..+....+.++|+|.++... .....+.+.
T Consensus 38 pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~---~~e---~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~ 111 (168)
T d7reqa2 38 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQ---TPE---ETARQAVEADVHVVGVSSLAGGHLTLVPALRKE 111 (168)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTB---CHH---HHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred CeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCcC---cHH---HHHHHHHccCCCEEEEecCcccchHHHHHHHHH
Confidence 45554444444445567778889999999998754432 333 45566666789999999654 456677788
Q ss_pred HHHcCC
Q 002301 241 AQYLGM 246 (940)
Q Consensus 241 a~~~g~ 246 (940)
+++.|+
T Consensus 112 L~~~g~ 117 (168)
T d7reqa2 112 LDKLGR 117 (168)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 888885
No 107
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.50 E-value=80 Score=24.87 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=41.7
Q ss_pred EEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHHHc
Q 002301 169 AIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQYL 244 (940)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~~~ 244 (940)
+|.+|+. ...+.+...|++.|.+|.... + ....+..+++..+++|++. +...++..++++.++.
T Consensus 4 LiVDDd~---~~~~~l~~~L~~~g~~v~~a~------~---~~eal~~l~~~~~dliilD~~mP~~~G~e~~~~ir~~ 69 (119)
T d1zh2a1 4 LIVEDEQ---AIRRFLRTALEGDGMRVFEAE------T---LQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW 69 (119)
T ss_dssp EEECSCH---HHHHHHHHHHHTTTCEEEEES------S---HHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTT
T ss_pred EEEECCH---HHHHHHHHHHHHCCCEEEEeC------C---HHHHHHHHHhcCCCEEEeccccCCCCCchHHHHHHhc
Confidence 3444443 456667788888888776431 2 2345566666789999987 4445677888888764
No 108
>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.27 E-value=2e+02 Score=23.41 Aligned_cols=51 Identities=18% Similarity=-0.035 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecC
Q 002301 151 QMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPL 201 (940)
Q Consensus 151 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~ 201 (940)
.+.+++.++..-+.++|++=++.-..+....+.+...|...|++|......
T Consensus 27 ig~a~~~~~~~~~~~~VvIg~D~R~ss~~~~~~~~~gl~~~G~~V~~~g~~ 77 (146)
T d1p5dx1 27 IGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMV 77 (146)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEEECCccchhhhhhhhheeeccCceEEEecccc
Confidence 455566666655667766555555566677777777777777776544333
No 109
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.19 E-value=1.7e+02 Score=24.87 Aligned_cols=75 Identities=12% Similarity=0.051 Sum_probs=47.5
Q ss_pred EEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEE--ecCCcHHHHHHHHHHcCC
Q 002301 169 AIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH--THYNRGPVVFHVAQYLGM 246 (940)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~--~~~~~~~~~l~~a~~~g~ 246 (940)
+|.+|+. .....+++.|++.|.+++... .+ -...+..++...+|+|++. +...++..++++.++..-
T Consensus 7 LiVDD~~---~~r~~l~~~L~~~g~~vv~~a-----~~---g~eal~~~~~~~pDlvllDi~mP~~dG~e~~~~ir~~~~ 75 (190)
T d1s8na_ 7 LIAEDEA---LIRMDLAEMLREEGYEIVGEA-----GD---GQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRI 75 (190)
T ss_dssp EEECSSH---HHHHHHHHHHHHTTCEEEEEE-----SS---HHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTC
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEEEE-----CC---HHHHHHHHhcCCCCEEEEeccccCcchHHHHHHHHhcCC
Confidence 3444443 456667777888898775432 12 2344556666789999998 445778899999887542
Q ss_pred CCCCeEEEecC
Q 002301 247 LGTGYVWIATS 257 (940)
Q Consensus 247 ~~~~~~wi~~~ 257 (940)
-.+.+.|.
T Consensus 76 ---~pIi~lTa 83 (190)
T d1s8na_ 76 ---APIVVLTA 83 (190)
T ss_dssp ---SCEEEEEE
T ss_pred ---CCEEEEeC
Confidence 23445554
No 110
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}
Probab=21.07 E-value=52 Score=27.33 Aligned_cols=33 Identities=9% Similarity=0.225 Sum_probs=24.0
Q ss_pred EEEEEE-EcCCcchhhHHHHHHHHhcCceeEEEe
Q 002301 166 EVIAIY-VDDDHGRNGIAALGDTLAAKRCRISFK 198 (940)
Q Consensus 166 ~v~ii~-~d~~~g~~~~~~l~~~l~~~g~~v~~~ 198 (940)
+|.|+| +.....+..++.+.+.+++.|+++...
T Consensus 2 kv~I~Y~S~tG~te~~A~~i~~~l~~~g~~v~~~ 35 (147)
T d1f4pa_ 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSR 35 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEEECCChhHHHHHHHHHHHHHHCCCeEEEE
Confidence 577777 344445567889999999999877643
No 111
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.84 E-value=18 Score=32.69 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=27.6
Q ss_pred cEEEEcCCCchhHHHHHHhhccCCccEEeeec
Q 002301 97 TVAIIGPQDAVTSHVVSHVANELQVPLLSFSA 128 (940)
Q Consensus 97 v~aiiGp~~s~~a~~va~~~~~~~vP~Is~~a 128 (940)
+.+|-||..|+-+.....+++++++|+||.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGd 36 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA 36 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence 45777999999999999999999999998543
No 112
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.84 E-value=2.1e+02 Score=23.63 Aligned_cols=76 Identities=13% Similarity=0.302 Sum_probs=53.2
Q ss_pred cCChHHHHHHHHHHHHHcCCeEEEEEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeE
Q 002301 145 TQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRI 224 (940)
Q Consensus 145 ~psd~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~v 224 (940)
+.++..-.+.+.++++....+++.++ .+. +..++.+.+.+...|+.+..- ..+.+..+-...++..+..+.++
T Consensus 8 v~~~e~K~~~L~~ll~~~~~~k~iIF-~~s---~~~~~~l~~~L~~~~~~~~~~---~~~~~~~~r~~~l~~f~~~~~~i 80 (162)
T d1fuka_ 8 VEEEEYKYECLTDLYDSISVTQAVIF-CNT---RRKVEELTTKLRNDKFTVSAI---YSDLPQQERDTIMKEFRSGSSRI 80 (162)
T ss_dssp EESGGGHHHHHHHHHHHTTCSCEEEE-ESS---HHHHHHHHHHHHHTTCCEEEE---CTTSCHHHHHHHHHHHHTTSCSE
T ss_pred eCCcHHHHHHHHHHHHhCCCCcEEEE-EEE---EchHHHHHHHHhhcCceEEEe---ccCCchhhHHHHHHHHhhcccce
Confidence 35555567889999999888886544 443 566788888898889876543 22245667777888888777776
Q ss_pred EEE
Q 002301 225 IVV 227 (940)
Q Consensus 225 iv~ 227 (940)
+|.
T Consensus 81 Lv~ 83 (162)
T d1fuka_ 81 LIS 83 (162)
T ss_dssp EEE
T ss_pred eec
Confidence 543
No 113
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
Probab=20.57 E-value=92 Score=29.16 Aligned_cols=73 Identities=5% Similarity=-0.086 Sum_probs=49.9
Q ss_pred EEEEcCCcchhhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecCCcHHHHHHHHHHcC
Q 002301 169 AIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLG 245 (940)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g 245 (940)
+|+.-..-+....+.+.+.+++.|+++.....- ...+..++.+++.+.+.|+||+.+.......++..+.+..
T Consensus 5 ~i~N~~s~~~~~~~~~~~~l~~~g~~~~v~~T~----~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~ev~~gl~~~~ 77 (295)
T d2bona1 5 LILNGKSTDNLPLREAIMLLREEGMTIHVRVTW----EKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCE 77 (295)
T ss_dssp EEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC----STTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHCC
T ss_pred EEECCCCCCchHHHHHHHHHHHCCCEEEEEEcC----CcchHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHhcc
Confidence 444323334445677888899999988654432 2346678888887788999988877777777777776654
No 114
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=20.10 E-value=1.4e+02 Score=23.68 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEe--cCCcHHHHHHHHHHcC
Q 002301 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT--HYNRGPVVFHVAQYLG 245 (940)
Q Consensus 179 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~--~~~~~~~~l~~a~~~g 245 (940)
.....+.+.+++.|.+.+.. . .+-...+..+++..+|+|++.. ...++..++++.++..
T Consensus 17 ~~~~~l~~~L~~~g~~~v~~--a------~~~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr~~~ 77 (129)
T d1p6qa_ 17 TSRLLLGDALQQLGFKQITA--A------GDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANP 77 (129)
T ss_dssp HHHHHHHHHHHTTTCSCEEC--C------SSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHCCCeEEEE--E------CCHHHHHHHHHhCCCCeEEeeeecCCCChHHHHHHHHhCc
Confidence 35667778888888742211 1 1223456666777889888874 3456778888777644
No 115
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=20.07 E-value=1.3e+02 Score=24.88 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCceeEEEeecCCCCCChhHHHHHHHHHhcCCCeEEEEEecC
Q 002301 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (940)
Q Consensus 181 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~ 231 (940)
...+...+++.|+++.....++ .+.+.+...+++..+ +.|+||..+..
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~i~~~~~-~~DliIttGG~ 76 (148)
T d1uz5a3 29 GRALCDAINELGGEGIFMGVAR--DDKESLKALIEKAVN-VGDVVVISGGA 76 (148)
T ss_dssp HHHHHHHHHHHTSEEEEEEEEC--SSHHHHHHHHHHHHH-HCSEEEEECCC
T ss_pred hHHHHHhhhcccccceeeeeec--cHHHHHHHHHHhhhc-cccEEEECCCc
Confidence 5567788888899998887777 677888888877664 47898888554
Done!