BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002303
(939 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana
GN=UBP8 PE=1 SV=2
Length = 871
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/870 (53%), Positives = 597/870 (68%), Gaps = 49/870 (5%)
Query: 95 QKVYLVPYRWWKESQ------------ILLAEKVG---GVLYEVLSNDDNTDLEILLHLK 139
Q+VY VP RWWK++Q IL G G ++++N N+D IL L+
Sbjct: 24 QRVYFVPLRWWKDAQDSMPSESVEKREILYTASCGSSYGGPMKLINNIFNSD--ILFDLR 81
Query: 140 KKEGSV-DSDCGEGGVSVREYALVPEGMWLRALKWHNDSK---AAVKDFGSSFAADEQDV 195
++ ++ + + GE VS R++ALV MWL+ALKW++D K VK F S+ D DV
Sbjct: 82 REGDALQNGETGEASVSGRDFALVSSDMWLQALKWYHDDKNTEKGVKSF-SAGGVDRGDV 140
Query: 196 FPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMND 255
+P+Q+RLSV QETNSL VKI +DN V+ ++RAC +F SE L IWD SGQTT F +D
Sbjct: 141 YPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLRIWDISGQTTLFFESD 200
Query: 256 RVTMSDDFSAKPGEEVFLQLQVHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSNDNL 315
V+ S D + +E+ L+LQ++G SDS+ ++ E K S + NG N
Sbjct: 201 -VSNSKDCQQQADQEILLELQIYGLSDSI-----KLKESKKEDGSTQQTNGITNGMNGGT 254
Query: 316 NSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKE 375
SNS+ G LGLTGL+NLGNTCFMNS++QCLAHTP++VD+FLG+Y KE
Sbjct: 255 VFRFGRSNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKE 314
Query: 376 INYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFL 435
IN +NPLG+ GE+ALAFGDLLR LWAPG VAPR FK KLA FAPQFSG+NQHDSQE L
Sbjct: 315 INLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQELL 374
Query: 436 AFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495
AFLLDGLHEDLNRVK KPY+EAKD +G+P+ EVA+EYWRNH ARNDSIIVD+CQGQY+S
Sbjct: 375 AFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQGQYKST 434
Query: 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDL 555
LVCP+C KVSV FDP MYLSLP+P T+MRTM +TV+S DGS++P P TV VPK+G+F+DL
Sbjct: 435 LVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPIPLTVNVPKFGKFEDL 494
Query: 556 IDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSL 615
AL T C L E LLV E+Y ++I R L+EP+D L LIRD DKLV YRL KD+ L
Sbjct: 495 HKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDANNSPL 554
Query: 616 VLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKLFLKLLDPFLMP----V 671
+++MH++ EE G+ S WK FG PLV RL D+ NGSD+ L+LKLL F MP
Sbjct: 555 IVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDVENLYLKLLSSFKMPTEFFT 614
Query: 672 GDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEP----HLSDDFQFYRLD 727
+ + ++E V + +D V +++E+ +P +L+DD R +
Sbjct: 615 ENLENPTEEEATDKTDTDGTTSVEDTNSTD---VKETTESLPDPVLRLYLTDD----RGN 667
Query: 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPES 787
SI E+ +P++ S K L + +W K ++ YDTCLLSSL EV K T+ P ES
Sbjct: 668 SIE-AEMLKEKPVNKS---KRLNVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQES 721
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
VSL+KCLEAFL EEPLGP+DMWYCP CK+H QA KKLDLWR P+ILVIHLKRFS+SR+ K
Sbjct: 722 VSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMK 781
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWF 907
+KL+ YVDFP+D+LDLS+Y+ KN Q + RY+LYAISNHYG MGGGHYTA+V G RW+
Sbjct: 782 NKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVHHGGDRWY 841
Query: 908 EFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937
+FDD V+ +S++ IKTSAAYVLFYKR+ D
Sbjct: 842 DFDDSHVHQISQEKIKTSAAYVLFYKRLVD 871
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
GN=UBP5 PE=1 SV=2
Length = 924
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/892 (42%), Positives = 526/892 (58%), Gaps = 65/892 (7%)
Query: 98 YLVPYRWWKE-----------------SQILLAEKVGGVLYEVLSNDDNTDLEILLHLKK 140
YL+ RWW+E S + G + S DN+DL +
Sbjct: 42 YLITQRWWQEWIEYVNQDQPCNTNDGSSLSEHCDSPGSSTLKKPSRIDNSDL--IYDSSL 99
Query: 141 KEGSVDSDCGEGGVSVREYALVPEGMWLRALKWHNDSKAAVKDFGSSFAADEQ---DVFP 197
++ S S+ E R+Y L+P+ +W + W+ + SS + + +V+P
Sbjct: 100 EDPSNTSEIIETLQEGRDYVLLPQEVWNQLRSWYGGGPTLARRVISSGLSQTELAVEVYP 159
Query: 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRV 257
L+++L + +++ ++IS ++ +L++RAC +F SE + IWD+ G LMND
Sbjct: 160 LRLQLLLMPKSDHSAIRISKKETIRELHRRACEIFDLDSEHVRIWDYYGHQKYSLMNDLD 219
Query: 258 TMSDDFSAKPGEEVFLQ-LQVHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSNDNLN 316
DD + + +++ ++ L ++G ++ + + A+ ++D S+ I S +L
Sbjct: 220 KTLDDANLQMDQDILVEVLDING---TLSSAHIQSAQENGLVDGDST-SILIEPSKSSLA 275
Query: 317 S---YITSSNSVRRGS-----------GNGGVCL----LGLTGLRNLGNTCFMNSAIQCL 358
+ + +S N+ R GS + GV GLTGL NLGNTCFMNSAIQCL
Sbjct: 276 AAGGFSSSRNAFRTGSVEVSQSFDNTYSSTGVTTRGSTAGLTGLLNLGNTCFMNSAIQCL 335
Query: 359 AHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLAN 418
HTPE YF DY +EIN++NPLG+ GELALAFGDLLRKLWAPG P+APR FK KLA
Sbjct: 336 VHTPEFASYFQEDYHQEINWQNPLGMVGELALAFGDLLRKLWAPGRTPIAPRPFKAKLAR 395
Query: 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRA 478
FAPQFSGYNQHDSQE LAFLLDGLHEDLNRVK KPY+ ++DA+G+P+EEVA+E+W+NH A
Sbjct: 396 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPDEEVADEFWKNHIA 455
Query: 479 RNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTM 538
RNDSIIVD+CQGQY+S LVCP+CNKVSVTFDP MYLSLP+ T R +TVTV S D + +
Sbjct: 456 RNDSIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPLQFNTTRAITVTVFSCDKTAL 515
Query: 539 PAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDE 598
P+ TV V K GR +DLI AL+ C L+ E+L +AEI + I R+ ++P L I+D+
Sbjct: 516 PSTITVNVSKQGRCRDLIQALTNACSLKQSEELKLAEIRNNFIHRLFEDPLIPLSSIKDD 575
Query: 599 DKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLS--DLTNGSDI 656
D L AY+L K SE +L+ + R+++ +++ K GTPL+ S D I
Sbjct: 576 DHLAAYKLSKSSENTTLLRLVLRRRDQKAGERESTVQLKPCGTPLLSSASCGDALTKGKI 635
Query: 657 RKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSR---VSDNDAVSDSSEAGD 713
L +L PF + GK N DS + + S+R + D V +A
Sbjct: 636 HCLVQNMLSPFRR--------EESVGKKGNSDSSIPERRSARFNNTEEEDKVGGLKKAKK 687
Query: 714 EPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAK-----PLTIHVQWAEKMIEKYDTCLL 768
L I +N P + ++ K +TI++ W ++ YD L
Sbjct: 688 SNSSDLGASKLSLQLIDEDNKTINLPDNEAEAMKLPSSATVTIYLDWTPELSGMYDITCL 747
Query: 769 SSLMEVCKPQLFTRMP-PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLW 827
SL EV K T+ E +SLY CLEAFL+EEPL P++MW+CP+C + QASKKLDLW
Sbjct: 748 ESLPEVLKYGPTTKKARSEPLSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLW 807
Query: 828 RSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHY 887
R P++LVIHLKRFS+SR K KL+T+V+FPI DLDL+ YV KN Y LYA++NHY
Sbjct: 808 RLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHY 867
Query: 888 GGMGGGHYTAFVD-LGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSDV 938
GGMG GHYTA + L RW+ FDD + ++ED++K+ AAYVLFY+R SD
Sbjct: 868 GGMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRRKSDA 919
>sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana
GN=UBP10 PE=2 SV=2
Length = 923
Score = 632 bits (1630), Expect = e-180, Method: Compositional matrix adjust.
Identities = 376/817 (46%), Positives = 500/817 (61%), Gaps = 59/817 (7%)
Query: 154 VSVREYALVPEGMWLRALKWHNDSKAAVKDF---GSSFAADEQDVFPLQIRLSVSQETNS 210
V +Y LVP+ +W R ++W++ + G + +V+PL + L+ ++ +
Sbjct: 103 VEGEDYVLVPKQVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESR 162
Query: 211 LLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEE 270
++++ + + +LY++ C + E +IWD+ + L+ D S K EE
Sbjct: 163 TVIRLGKQASIRELYEKVCAMTGVPQEKAHIWDYFDKRKNGLL-------DPLSYKSLEE 215
Query: 271 VFLQL------QVHGFSDSVGE----TNDEMA----EHYKIIDSICNGSVKING----SN 312
L + +V G S S T +E+A E + I +I G NG SN
Sbjct: 216 SSLHMDQDILVEVDGLSSSSQSAMSSTGNELALVPLEPSRSIVTIAGGPTLSNGHSTTSN 275
Query: 313 DNLNSYITSSNSVRR-----GSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDY 367
+L ITS + R G G G GL GL NLGNTCFMNSA+QCLAHTP IV+Y
Sbjct: 276 FSLFPRITSEDDGRDSLSILGKGEKG----GLAGLSNLGNTCFMNSALQCLAHTPPIVEY 331
Query: 368 FLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYN 427
FL DY +IN +NPLG+ GELA+AFGDLL+KLW+ G VAPR FK KLA FAPQFSGYN
Sbjct: 332 FLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYN 391
Query: 428 QHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDL 487
QHDSQE LAFLLDGLHEDLN+VK KPY+E KD++ +P++EVAEE W H+ARNDS+IVD+
Sbjct: 392 QHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDV 451
Query: 488 CQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVP 547
CQGQY+S LVCPVC K+S+TFDP MYLS+P+PST R+MT+TV DGS +P P+TV VP
Sbjct: 452 CQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMPYTVIVP 511
Query: 548 KYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRL- 606
K G +DLI AL T C L E LL+AE+Y KIFR + P D L I+D++ +VAYRL
Sbjct: 512 KQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLN 571
Query: 607 --PKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL-SDLTNGSDIRKLFLKL 663
PK S L + +H +E + + K+FGTP V + ++ +G+DI +
Sbjct: 572 QIPKGSRKAKLEI-LHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGF 630
Query: 664 LDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQF 723
L P L V S + + D+ V+ + S + + ++S+ LS F+
Sbjct: 631 LSP-LHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASDR----ELS--FRI 683
Query: 724 YRLDSIRPTEIKMNEPLSISDFAKPLTIH---VQWAEKMIEKYDTCLLSSLMEVCKPQLF 780
+ D R IK PL P T+ V+W E E+YD+ LS L EV K
Sbjct: 684 FLTDE-RGLNIK---PLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFS 739
Query: 781 TRMP-PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKR 839
+ ES+SL+ CLEAFL EEPLGP+DMW+CP CK+H QA+KKLDLW+ PDILV HLKR
Sbjct: 740 AKKTRQESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKR 799
Query: 840 FSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV 899
F++SRY K+K+DT+V+FP+ DLDLS YV KN Q S Y LYA+SNHYGG+GGGHYTA+
Sbjct: 800 FTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNGQ-SYLYELYAVSNHYGGLGGGHYTAYA 858
Query: 900 DL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRV 935
L +W+ FDD V V+E I+ SAAYVLFY+RV
Sbjct: 859 KLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRV 895
>sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana
GN=UBP9 PE=2 SV=1
Length = 910
Score = 627 bits (1618), Expect = e-178, Method: Compositional matrix adjust.
Identities = 375/813 (46%), Positives = 500/813 (61%), Gaps = 60/813 (7%)
Query: 158 EYALVPEGMWLRALKWHNDSKAAVKDF---GSSFAADEQDVFPLQIRLSVSQETNSLLVK 214
+Y LVP+ +W R ++W++ + G + +V+PL + L+ ++ + +++
Sbjct: 107 DYVLVPQEVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIR 166
Query: 215 ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274
+ + + +LY++ C L E +IWD+ + L+ D S K EE L
Sbjct: 167 LGKQASIRELYEKVCALTGVPQEKAHIWDYFDKRKNGLL-------DSLSYKSLEESSLH 219
Query: 275 ------LQVHGFSDSVGE---TNDEMA----EHYKIIDSICNGSVKING----SNDNLNS 317
L+V G S S T +E+A E + +I G NG SN +L
Sbjct: 220 MDQDILLEVDGSSSSQSAMSSTGNELALVPLEPSRSSVTIAGGPTLSNGHSTTSNFSLFP 279
Query: 318 YITS----SNSVR-RGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDY 372
ITS SNS+ G G G GL GL NLGNTCFMNSA+QCLAHTP IV+YFL DY
Sbjct: 280 RITSEDDGSNSLSILGKGEKG----GLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDY 335
Query: 373 QKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQ 432
+IN +NPLG+ GELA+AFGDLL+KLW+ G VAPR FK KLA FAPQFSGYNQHDSQ
Sbjct: 336 SDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQ 395
Query: 433 EFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQY 492
E LAFLLDGLHEDLN+VK KPY+E KD++ +P++EVAEE W H+ARNDS+IVD+CQGQY
Sbjct: 396 ELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQY 455
Query: 493 RSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRF 552
+S LVCP C K+S+TFDP MYLS+P+PST R+MTVTV DGS +P P+TV VPK G
Sbjct: 456 KSTLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFYCDGSHLPMPYTVIVPKNGSI 515
Query: 553 QDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRL---PKD 609
+DLI AL T C L E LL+AE+Y KIF+ + P D L I+D++ +VAYRL PK
Sbjct: 516 RDLITALGTACLLAEDESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPKG 575
Query: 610 SETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL-SDLTNGSDIRKLFLKLLDPFL 668
S L + +K R + K+FGTP V + ++ +G+DI + + L P L
Sbjct: 576 SGKAKLEILHGGQKRPILESVR-GRDVKLFGTPFVTYVNTEPLSGADIDAVLSRFLSP-L 633
Query: 669 MPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLD- 727
V S + + D+ V++ + S + + D+S+ LS F+ + D
Sbjct: 634 HKVHAPSKIHNGSENGHLPDATVDEASEILSSPDTEIDDASDR----ELS--FRIFLTDE 687
Query: 728 ---SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMP 784
+ +P + + + L I+ + V+W E E+YD+ LS L EV K +
Sbjct: 688 RGLNFKPLQSESSISLGIA-----TRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKT 742
Query: 785 -PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS 843
ES+SL+ CLEAFL EEPLGP+DMW+CP CK+H QA+KKLDLW+ PDILV HLKRF++S
Sbjct: 743 RQESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYS 802
Query: 844 RYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDL-G 902
RY K+K+DT+V+FP+ DLDLS YV KN Q S Y LYA+SNHYGG+GGGHYTA+ L
Sbjct: 803 RYLKNKIDTFVNFPVHDLDLSKYVKNKNDQ-SYLYELYAVSNHYGGLGGGHYTAYAKLID 861
Query: 903 HKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRV 935
W+ FDD V V+E IK SAAYVLFY+RV
Sbjct: 862 DNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRV 894
>sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis
thaliana GN=UBP11 PE=3 SV=2
Length = 892
Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust.
Identities = 366/811 (45%), Positives = 490/811 (60%), Gaps = 68/811 (8%)
Query: 158 EYALVPEGMWLRALKWHNDSKAAVKD------FGSSFAADEQDVFPLQIRLSVSQETNSL 211
+Y LV + +W + +KW+ + + SF+ + V+ L + L+ S++ ++
Sbjct: 105 DYTLVQQEVWRKLVKWYKGGPPVPRKLISQGFYTKSFSVE---VYLLCLTLTDSRDESTT 161
Query: 212 LVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEV 271
++++S + + LY+ C E IWD+ + L+ D S + EE
Sbjct: 162 IIRLSKQASIGQLYEMVCAGKGVAKEKARIWDYFEKKKSVLL-------DPSSEQSVEEA 214
Query: 272 FLQ------LQVHG-----FSDSVGETNDEMAE----HYKIIDSICNGSVKINGSNDNLN 316
LQ L+V G F S+ E M +D + G NG ++
Sbjct: 215 GLQFNQDILLEVDGSASSQFVMSLAENELAMVPLEPMRSDAMDIVRGGGTLSNGHSNGFK 274
Query: 317 SYITSSNSVR-----RGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD 371
N+ + R G G GL GL+NLGNTCFMNS +QCLAHTP IV+YFL D
Sbjct: 275 FSFFGRNTFKDDVSSRTFGKGEK--RGLGGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQD 332
Query: 372 YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDS 431
Y+ +IN +NPLG+ GELA+AFG+LLRKLW+ G VAPR FK KLA FAPQFSGYNQHDS
Sbjct: 333 YRSDINAKNPLGMRGELAIAFGELLRKLWSSGQNTVAPRAFKTKLARFAPQFSGYNQHDS 392
Query: 432 QEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQ 491
QE LAFLLDGLHEDLN+VK KPY+EAKD++G+P++EVAEE W+ H+ARNDS+IVD+ QGQ
Sbjct: 393 QEMLAFLLDGLHEDLNKVKRKPYIEAKDSDGRPDDEVAEEKWKYHKARNDSVIVDVFQGQ 452
Query: 492 YRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGR 551
Y+S LVCP C K+S+TFDP MYLSLP+PS+ R+MTVTV DGS +P P+TVTVPK G
Sbjct: 453 YKSTLVCPDCGKISITFDPFMYLSLPLPSSRTRSMTVTVFYGDGSHLPMPYTVTVPKDGS 512
Query: 552 FQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSE 611
+DL +AL T C L N E LL+AE+Y K+F+ + P +LL I+D + +VAYR + +
Sbjct: 513 CRDLSNALGTACCLDNDESLLLAEVYDHKVFKYYENPRELLNGIKDNEHIVAYRFKQMHK 572
Query: 612 TPSLVLF--MHERKEESCHLGRLSLEWKIFGTPLVGRLS-DLTNGSDIRKLFLKLLDPFL 668
P V +H +E+S G K FGTPLV ++ + +G+DI LL P
Sbjct: 573 GPGKVKLEILHGEQEKSSDRGP-----KCFGTPLVTYINKEPLSGTDIATSISGLLSPLR 627
Query: 669 ---MPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYR 725
M +S N + V D +S + D ++ ++ L D+ +
Sbjct: 628 RVHMSCVVNS---------GNENGHVPDESSRSILSRDTETEDNDRELSLSLLRDYYSFN 678
Query: 726 LDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPP 785
L + E S+ + + V+W EK EKYD+ L+ L +V K L +
Sbjct: 679 LQPL--------ESDSVVNPGSVTKVLVKWNEKEHEKYDSSYLNDLPKVHKNVLAKKTMQ 730
Query: 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY 845
E +SL+ CLEAFL EEPLGP+DMWYCP CK+H QA+KKLDLW+ PDILV HLKRF++SRY
Sbjct: 731 EGISLFSCLEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRY 790
Query: 846 FKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDL-GHK 904
FK+K+DT V+F I DLDLS YV ++ Q S Y LYAISNHYGG+GGGHYTA+ L
Sbjct: 791 FKNKIDTLVNFHIHDLDLSKYVKNEDGQ-SYLYELYAISNHYGGLGGGHYTAYAKLMDET 849
Query: 905 RWFEFDDDRVYPVSEDNIKTSAAYVLFYKRV 935
+W+ FDD RV V+E IKTSAAYVLFY+RV
Sbjct: 850 KWYNFDDSRVSAVNESEIKTSAAYVLFYQRV 880
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/641 (39%), Positives = 359/641 (56%), Gaps = 57/641 (8%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GL NLGNTCFMNSA+QCL++T + +YFL D Y+ EIN +NPLG+ GE+A A+ +L+
Sbjct: 300 GLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 359
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+++W+ VAPRMFK ++ FAPQFSGY Q DSQE LAF+LDGLHEDLNRVK KPYLE
Sbjct: 360 KQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLE 419
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KDA G+P+ VA+E W NHR RNDS+IVD G ++S LVCP C KVSVTFDP YL+L
Sbjct: 420 PKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 479
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P R M V ++ D P + VTVP G DL +ALS + E ++V ++
Sbjct: 480 PLPLKKDRIMEVFLVPADPQCRPIQYRVTVPLMGAISDLCEALSKLSGIAA-ENMVVTDV 538
Query: 577 YRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPK----DSETPSLVLFMHERKEESCHLGRL 632
Y + ++ + + L I D + Y + SE +L ++ E+K
Sbjct: 539 YNHRFHKIF-QMDEGLSHITPRDDIFVYEVCNTSMDGSECITLPVYFREKKSRPSSASSG 597
Query: 633 SLEWKIFGTPLVGRLS--DLTNGSDIRKLFLKLLDPFLMPVGD----------------- 673
++ ++G PL+ + LT S + + ++ P+ D
Sbjct: 598 AV---LYGQPLLVSVPKHKLTLESLYQAVCDRISRYIKQPLPDEFLSSPLEPGACNGSRS 654
Query: 674 --DSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGD----EPHLSDDFQFYRLD 727
+ D +E + G + +V S ++D D SE+ +P F F ++
Sbjct: 655 SYEGDEEEEMDHQEEGKEQLSEVEGS--GEDDQGDDHSESAQKVKGQPRHKRLFTFSLVN 712
Query: 728 SIRPTEIKMNEPLSISDFAKPL------TIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFT 781
S +I S++ K L T+ + W + Y E C+ L
Sbjct: 713 SCGTADIN-----SLATDGKLLKLNSRSTLAIDWDSETRSLY---FDEQESEACEKHLSM 764
Query: 782 RMPPE----SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHL 837
P + +V+L +C+E F E LG D WYCP CKKH QA+KK DLW P ILV+HL
Sbjct: 765 SQPQKKKKAAVALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHL 824
Query: 838 KRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTA 897
KRFS++RY++ KLDT V+FP+ L++S +VC ++++ Y L A+SNHYG MG GHYTA
Sbjct: 825 KRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSAR-PYVYDLIAVSNHYGAMGVGHYTA 883
Query: 898 FV-DLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937
+ + + +W+ FDD V SED I T AAYVLFY+R D
Sbjct: 884 YAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRRDD 924
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 287/847 (33%), Positives = 418/847 (49%), Gaps = 82/847 (9%)
Query: 158 EYALVPEGMWLRALKWHNDSKAA------VKDFGSSFAADEQDVFPLQIRLSV-SQETNS 210
+Y LVP W + L W+ + V + G + +V+ L+++L S TN
Sbjct: 92 DYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNV 151
Query: 211 LLVKISLEDNKVDLYKRACNLF-ISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGE 269
L S D + K LF I +W+ T ++ D G+
Sbjct: 152 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQ 211
Query: 270 EVFLQLQVHGFS---------DSVGETNDEMAEHYKIIDSICNGSVKINGSNDNLNSYIT 320
+ ++ Q + S + + + S + + D+ NS
Sbjct: 212 VLVIEPQNEDGTWPRQTLQSKSSTAPSRNFTTSSKPSASPYSSMSASLIANGDSTNSSGM 271
Query: 321 SSNSVRRGSGNGGVCL-----------LGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFL 369
++ V RG GL GL NLGNTCFMNSA+QCL++T + +YFL
Sbjct: 272 HNSGVSRGGAGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQCLSNTGPLTEYFL 331
Query: 370 GD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQ 428
D Y+ EIN +NPLG+ GE+A A+ +L++++W+ VAPRMFK ++ FAPQFSGY Q
Sbjct: 332 KDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQ 391
Query: 429 HDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLC 488
DSQE LAF+LDGLHEDLNRVK KPYLE KDA G+P+ VA+E W NHR RNDS+IVD
Sbjct: 392 QDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHRLRNDSVIVDTF 451
Query: 489 QGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPK 548
G ++S LVCP C KVSVTFDP YL+LP+P R M V ++ D P + VTVP
Sbjct: 452 HGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPHCRPIQYRVTVPL 511
Query: 549 YGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRL-- 606
G DL +ALS + E ++V ++Y + ++ + + L I D + Y +
Sbjct: 512 MGAISDLCEALSKLSGIAA-ENMVVTDVYNHRFHKIF-QMDEGLSHITPRDDIFVYEICT 569
Query: 607 -PKD-SETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLV------------------GR 646
P D SE +L ++ E+K ++ ++G PL+ R
Sbjct: 570 TPMDGSEYITLPVYFREKKSRPSSTSSGAV---LYGQPLLVSVPKHRLTLESLYQAVCER 626
Query: 647 LSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDA-- 704
+S + L+P G + + ++D+ + E ++ S D+
Sbjct: 627 ISRYIKQPLPEEFLSSPLEPGAC-NGSRGSYEGDEEEMDHQEEGKEQLSEVEESGEDSQG 685
Query: 705 ---VSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPL------TIHVQW 755
+ +A P F F ++S +I S++ K L T+ + W
Sbjct: 686 GDPTETTQKAKGPPRHKRLFTFSLVNSCGTADIN-----SLATDGKLLKLNSRSTLAIDW 740
Query: 756 AEKMIEKYDTCLLSSLMEVCKPQLFTRMPPE----SVSLYKCLEAFLKEEPLGPEDMWYC 811
+ Y E C+ P + +++L +C+E F E LG D WYC
Sbjct: 741 DSETRSLY---FDEQESEACEKHTSMSQPQKKKKAAIALRECIELFTTMETLGEHDPWYC 797
Query: 812 PRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKN 871
P CKKH QA+KK DLW P ILV+HLKRFS++RY++ KLDT V+FP+ L++S +VC +
Sbjct: 798 PTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRA 857
Query: 872 SQLSNRYVLYAISNHYGGMGGGHYTAFV-DLGHKRWFEFDDDRVYPVSEDNIKTSAAYVL 930
++ Y L A+SNHYG MG GHYTA+ + + +W+ FDD V SED I T AAYVL
Sbjct: 858 AR-PYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVL 916
Query: 931 FYKRVSD 937
FY+R D
Sbjct: 917 FYQRRDD 923
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/640 (40%), Positives = 358/640 (55%), Gaps = 54/640 (8%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GL NLGNTCFMNSA+QCL++T + DYFL D Y+ EIN +NPLG+ GE+A A+ +L+
Sbjct: 300 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 359
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+++W+ VAPRMFK ++ FAPQFSGY Q DSQE LAFLLDGLHEDLNRVK KPYLE
Sbjct: 360 KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLE 419
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KDA G+P+ VA+E W NHR RNDS+IVD G ++S LVCP C KVSVTFDP YL+L
Sbjct: 420 LKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 479
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P R M + ++ D P + V VP G DL +ALS + E ++V ++
Sbjct: 480 PLPLKKDRVMEIFLVPADPRCRPTQYRVVVPLMGAVSDLCEALSKLSGIAA-ENMVVTDV 538
Query: 577 YRSKIFRVLDEPSDLLGLIRDEDKLVAYRL----PKDSETPSLVLFMHERKEESCHLGRL 632
Y + ++ + + L I D + Y + P SE +L ++ ERK
Sbjct: 539 YNHRFHKIF-QMDEGLNHIMPRDDIFVYEVCSTSPDGSECVTLPVYFRERKSRPSSTSTG 597
Query: 633 SLEWKIFGTPLVGRLS--DLTNGSDIRKLFLKLLDPFLMPVGDDSDFSD-EAGKIDNGDS 689
++ ++G PL+ + LT S + + ++ P+ D+S S E G + S
Sbjct: 598 AV---LYGQPLLVSVPKHKLTLESLYQAVCERISRYIKQPLPDESGSSPLELGACNGSRS 654
Query: 690 IV---------------EDVTSSRVS-DNDAVSDSSEAGDE-----PHLSDDFQFYRLDS 728
E ++ + S D++ SD EA + P F F ++S
Sbjct: 655 GCAGEDEEEMEHQEEGREQLSETEGSGDDEPGSDHGEATQKKNKGRPCPRRLFTFSLVNS 714
Query: 729 IRPTEI----------KMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQ 778
+I K+N +++ T + E+ E Y+ + + +PQ
Sbjct: 715 YGTADINSLATDGKLLKLNSRSTLAIDWDSETRSCYYNEQESETYE-----KHVSMLQPQ 769
Query: 779 LFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLK 838
+ +V+L C+E F E LG D WYCP CKKH QA+KK DLW P ILV+HLK
Sbjct: 770 ---KKKKTAVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLK 826
Query: 839 RFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAF 898
RFS++RY++ KLDT V+FP+ L++S +V C S Y L A+SNHYG MG GHYTA+
Sbjct: 827 RFSYNRYWRDKLDTVVEFPVRGLNMSEFV-CDPSARPYVYDLIAVSNHYGAMGVGHYTAY 885
Query: 899 V-DLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937
+ + +W+ FDD V ED I T AAYVLFY+R D
Sbjct: 886 AKNKLNGKWYYFDDSNVSLACEDQIVTKAAYVLFYQRRDD 925
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 259/646 (40%), Positives = 358/646 (55%), Gaps = 66/646 (10%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GL NLGNTCFMNSA+QCL++T + DYFL D Y+ EIN +NPLG+ GE+A A+ +L+
Sbjct: 300 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 359
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+++W+ VAPRMFK ++ FAPQFSGY Q DSQE LAFLLDGLHEDLNRVK KPYLE
Sbjct: 360 KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLE 419
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KDA G+P+ VA+E W NHR RNDS+IVD G ++S LVCP C KVSVTFDP YL+L
Sbjct: 420 LKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 479
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P R M V ++ D P + VTVP G DL +ALS + E ++VA++
Sbjct: 480 PLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIAA-ENMVVADV 538
Query: 577 YRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPK----DSETPSLVLFMHERKEESCHLGRL 632
Y + ++ + + L I D + Y + SE +L ++ ERK
Sbjct: 539 YNHRFHKIF-QMDEGLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSA 597
Query: 633 SLEWKIFGTPLVGRLSDLTNGSDIRKLFLKLLDPF----LMPVGDDSDFSDEAGKIDNGD 688
S ++G PL+ LS + + L+ + D P+ D+ S NG
Sbjct: 598 S---ALYGQPLL--LSVPKHKLTLESLYQAVCDRISRYVKQPLPDEFGSSPLEPGACNGS 652
Query: 689 -----------SIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDD------------FQFYR 725
++ ++S+ + S E G++P + F F
Sbjct: 653 RNSCEGEDEEEMEHQEEGKEQLSETEG-SGEDEPGNDPSETTQKKIKGQPCPKRLFTFSL 711
Query: 726 LDSIRPTEI----------KMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVC 775
++S +I K+N +++ T + + E+ E Y+ + S+++
Sbjct: 712 VNSYGTADINSLAADGKLLKLNSRSTLAMDWDSETRRLYYDEQESEAYEKHV--SMLQPQ 769
Query: 776 KPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVI 835
K + T + + L+ +E LG D WYCP CKKH QA+KK DLW P ILV+
Sbjct: 770 KKKKTTVALRDCIELFTTMET------LGEHDPWYCPNCKKHQQATKKFDLWSLPKILVV 823
Query: 836 HLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNR---YVLYAISNHYGGMGG 892
HLKRFS++RY++ KLDT V+FPI L++S +VC LS R Y L A+SNHYG MG
Sbjct: 824 HLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC----NLSARPYVYDLIAVSNHYGAMGV 879
Query: 893 GHYTAFV-DLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937
GHYTA+ + + +W+ FDD V SED I T AAYVLFY+R D
Sbjct: 880 GHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 925
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 358/645 (55%), Gaps = 64/645 (9%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GL NLGNTCFMNSA+QCL++T + DYFL D Y+ EIN +NPLG+ GE+A A+ +L+
Sbjct: 300 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 359
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+++W+ VAPRMFK ++ FAPQFSGY Q DSQE LAFLLDGLHEDLNRVK KPYLE
Sbjct: 360 KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLE 419
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KDA G+P+ VA+E W NHR RNDS+IVD G ++S LVCP C KVSVTFDP YL+L
Sbjct: 420 LKDANGRPDVVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 479
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P R M V ++ D P + VTVP G DL +ALS + E ++VA++
Sbjct: 480 PLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIAA-ENMVVADV 538
Query: 577 YRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPK----DSETPSLVLFMHERKEESCHLGRL 632
Y + ++ + + L I D + Y + SE +L ++ ERK
Sbjct: 539 YNHRFHKIF-QMDEGLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSA 597
Query: 633 SLEWKIFGTPLVGRLSDLTNGSDIRKLFLKLLDPF----LMPVGDDSDFSD-EAGKIDNG 687
S ++G PL+ LS + + L+ + D P+ D+ S E G +
Sbjct: 598 S---ALYGQPLL--LSVPKHKLTLESLYQAVCDRISRYVKQPLPDEFGSSPLEPGACNGS 652
Query: 688 DSIV---------------EDVTSSRVSDNDAV-SDSSEAGD-----EPHLSDDFQFYRL 726
+ E ++ + S D SD SE +P F F +
Sbjct: 653 RNSCEGEDEEEMEHQEEGKEQLSETEGSGEDEPGSDPSETTQKKIKGQPCPKRLFTFSLV 712
Query: 727 DSIRPTEI----------KMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCK 776
+S +I K+N +++ T + + E+ E Y+ + S+++ K
Sbjct: 713 NSYGTADINSLAADGKLLKLNSRSTLAMDWDSETRSLYYDEQESEAYEKHV--SMLQPQK 770
Query: 777 PQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIH 836
+ T + + L+ +E LG D WYCP CKKH QA+KK DLW P ILV+H
Sbjct: 771 KKKTTVALRDCIELFTTMET------LGEHDPWYCPNCKKHQQATKKSDLWSLPKILVVH 824
Query: 837 LKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNR---YVLYAISNHYGGMGGG 893
LKRFS++RY++ KLDT V+FPI L++S +VC LS R Y L A+SNHYG MG G
Sbjct: 825 LKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC----NLSARPYVYDLIAVSNHYGAMGVG 880
Query: 894 HYTAFV-DLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937
HYTA+ + + +W+ FDD V SED I T AAYVLFY+R D
Sbjct: 881 HYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 925
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis
GN=usp15 PE=2 SV=2
Length = 982
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 262/655 (40%), Positives = 358/655 (54%), Gaps = 66/655 (10%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GL NLGNTCFMNSAIQCL++TP + +YFL D YQ E+N +NPLG+ GE+A ++ +L+
Sbjct: 286 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQDELNMDNPLGMRGEIAKSYAELI 345
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+++W+ V PR FK ++ FAPQFSGY Q D QE LAFLLDGLHEDLNR++ KPY++
Sbjct: 346 KQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ 405
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KDA+G+P++ VAEE W NH RNDSIIVD+ G ++S LVCP C+K+SVTFDP YL+L
Sbjct: 406 LKDADGRPDKVVAEEAWENHIKRNDSIIVDIFHGLFKSTLVCPECSKISVTFDPFCYLTL 465
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P R + V ++ D P + V VPK G DL ALS+ + EK++V +I
Sbjct: 466 PLPMKKERALEVYLVRMDPLAKPMQYKVIVPKIGNIMDLCTALSSLSGIA-PEKMVVTDI 524
Query: 577 YRSKIFRVLDEPSDLLGLIRDEDKLV---AYRLPKDSETPSLVLFMHER---KEESCHLG 630
Y + R+ +L ++ +D V + +D+E + +++ E+ S H G
Sbjct: 525 YNHRFHRIFAMDENLSSIMERDDIYVFETSINRTEDTEQVIIPVYLREKFRHTSYSHHHG 584
Query: 631 RLSLEWKIFGTP-LVGRLSDLTNGSDIRKLFLKLL------------------------- 664
+FG P L+ ++T L L++
Sbjct: 585 ST-----LFGQPFLITVPRNITEDKLYNLLLLRMCRYVKATNDTEENDGSLHCNKEHTVN 639
Query: 665 -----------DPFLMPVG--DDSDFSDEAGKIDNGDSIVED-VTSSRVSDN-----DAV 705
P M DD D+ +N +S ED V S+N D
Sbjct: 640 GNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTC 699
Query: 706 SDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISD-----FAKPLTIHVQWAEKMI 760
S G + L FQF L S T IK + D + + + W K+
Sbjct: 700 KGQSVTGQKKRLFT-FQFSNLGSSDITYIKDDTKYIRFDERQLRLDERSYLALDWDPKLK 758
Query: 761 EKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQA 820
+K+ + E + FT + L C+E F +E LG ED WYCP CK+H QA
Sbjct: 759 KKFFDENAAEDFEKHESVDFTPQKKAFMKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQA 818
Query: 821 SKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVL 880
+KKLDLW P +LV+HLKRFS+SRY + KLDT VDFPI DLD+S ++ N+ Y L
Sbjct: 819 TKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSTFLINPNAGPCC-YNL 877
Query: 881 YAISNHYGGMGGGHYTAFV-DLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
A+SNHYGGMGGGHYTAF + +W+ FDD V SE+ I + AAYVLFY+R
Sbjct: 878 IAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEEQIVSKAAYVLFYQR 932
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15
PE=1 SV=3
Length = 981
Score = 283 bits (724), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 135/266 (50%), Positives = 184/266 (69%), Gaps = 2/266 (0%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GL NLGNTCFMNSAIQCL++TP + +YFL D YQ+E+N++NPLG+ GE+A ++ +L+
Sbjct: 287 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 346
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+++W+ V PR FK ++ FAPQFSGY Q D QE LAFLLDGLHEDLNR++ KPY++
Sbjct: 347 KQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ 406
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KDA+G+P++ VAEE W NH RNDSIIVD+ G ++S LVCP C K+SVTFDP YL+L
Sbjct: 407 LKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTL 466
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P RT+ V ++ D T P + V VPK G DL ALS + +K++V +I
Sbjct: 467 PLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIP-ADKMIVTDI 525
Query: 577 YRSKIFRVLDEPSDLLGLIRDEDKLV 602
Y + R+ +L ++ +D V
Sbjct: 526 YNHRFHRIFAMDENLSSIMERDDIYV 551
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 109/154 (70%), Gaps = 4/154 (2%)
Query: 784 PPES--VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFS 841
PP+ V L C+E F +E LG ED WYCP CK+H QA+KKLDLW P +LV+HLKRFS
Sbjct: 780 PPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFS 839
Query: 842 FSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV-D 900
+SRY + KLDT VDFPI+DLD+S ++ N+ RY L A+SNHYGGMGGGHYTAF +
Sbjct: 840 YSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPC-RYNLIAVSNHYGGMGGGHYTAFAKN 898
Query: 901 LGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
+W+ FDD V SED I + AAYVLFY+R
Sbjct: 899 KDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932
>sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15
PE=2 SV=1
Length = 952
Score = 280 bits (717), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/266 (50%), Positives = 183/266 (68%), Gaps = 2/266 (0%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GL NLGNTCFMNSA QCL++TP + +YFL D YQ+E+N++NPLG+ GE+A ++ +L+
Sbjct: 258 GLCGLSNLGNTCFMNSAFQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 317
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+++W+ V PR FK ++ FAPQFSGY Q D QE LAFLLDGLHEDLNR++ KPY++
Sbjct: 318 KQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ 377
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KDA+G+P++ VAEE W NH RNDSIIVD+ G ++S LVCP C K+SVTFDP YL+L
Sbjct: 378 LKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTL 437
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P RT+ V ++ D T P + V VPK G DL ALS + +K++V +I
Sbjct: 438 PLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSLLSGVP-ADKMIVTDI 496
Query: 577 YRSKIFRVLDEPSDLLGLIRDEDKLV 602
Y + R+ +L ++ +D V
Sbjct: 497 YNHRFHRIFAMDENLSSIMERDDIYV 522
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 109/154 (70%), Gaps = 4/154 (2%)
Query: 784 PPES--VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFS 841
PP+ V L C+E F +E LG ED WYCP CK+H QA+KKLDLW P +LV+HLKRFS
Sbjct: 751 PPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFS 810
Query: 842 FSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV-D 900
+SRY + KLDT VDFPI+DLD+S ++ N+ RY L A+SNHYGGMGGGHYTAF +
Sbjct: 811 YSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPC-RYNLIAVSNHYGGMGGGHYTAFAKN 869
Query: 901 LGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
+W+ FDD V SED I + AAYVLFY+R
Sbjct: 870 KDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15
PE=2 SV=1
Length = 981
Score = 279 bits (714), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 133/266 (50%), Positives = 183/266 (68%), Gaps = 2/266 (0%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GL NLGNTCFMNSAIQCL++TP + +YFL D YQ+E+N++NPLG+ GE+A ++ +L+
Sbjct: 287 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 346
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+++W+ V PR FK ++ FAPQFSGY Q D QE LAFLLDGLHEDLNR++ KPY++
Sbjct: 347 KQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ 406
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KDA+G+P++ VAEE W NH RNDSIIVD+ G ++S LVCP C K+SVTFDP YL+L
Sbjct: 407 LKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTL 466
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P R++ V ++ D P + V VPK G DL ALS + +K++V +I
Sbjct: 467 PLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDI 525
Query: 577 YRSKIFRVLDEPSDLLGLIRDEDKLV 602
Y + R+ +L ++ +D V
Sbjct: 526 YNHRFHRIFAVDENLSSIMERDDIYV 551
Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 108/154 (70%), Gaps = 4/154 (2%)
Query: 784 PPES--VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFS 841
PP+ V L C+E F +E LG ED WYCP CK+H QA+KKLDLW P +LV+HLKRFS
Sbjct: 780 PPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFS 839
Query: 842 FSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV-D 900
+SRY + KLDT VDFPI DLD+S ++ N+ RY L A+SNHYGGMGGGHYTAF +
Sbjct: 840 YSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPC-RYNLIAVSNHYGGMGGGHYTAFAKN 898
Query: 901 LGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
+W+ FDD V SED I + AAYVLFY+R
Sbjct: 899 KDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932
>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus
GN=Usp15 PE=1 SV=1
Length = 952
Score = 279 bits (714), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 133/266 (50%), Positives = 183/266 (68%), Gaps = 2/266 (0%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GL NLGNTCFMNSAIQCL++TP + +YFL D YQ+E+N++NPLG+ GE+A ++ +L+
Sbjct: 258 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 317
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+++W+ V PR FK ++ FAPQFSGY Q D QE LAFLLDGLHEDLNR++ KPY++
Sbjct: 318 KQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQ 377
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KDA+G+P++ VAEE W NH RNDSIIVD+ G ++S LVCP C K+SVTFDP YL+L
Sbjct: 378 LKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTL 437
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P R++ V ++ D P + V VPK G DL ALS + +K++V +I
Sbjct: 438 PLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVP-ADKMIVTDI 496
Query: 577 YRSKIFRVLDEPSDLLGLIRDEDKLV 602
Y + R+ +L ++ +D V
Sbjct: 497 YNHRFHRIFAMDENLSSIMERDDIYV 522
Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 108/154 (70%), Gaps = 4/154 (2%)
Query: 784 PPES--VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFS 841
PP+ V L C+E F +E LG ED WYCP CK+H QA+KKLDLW P +LV+HLKRFS
Sbjct: 751 PPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFS 810
Query: 842 FSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV-D 900
+SRY + KLDT VDFPI DLD+S ++ N+ RY L A+SNHYGGMGGGHYTAF +
Sbjct: 811 YSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPC-RYNLIAVSNHYGGMGGGHYTAFAKN 869
Query: 901 LGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
+W+ FDD V SED I + AAYVLFY+R
Sbjct: 870 KDDGKWYYFDDSSVSSASEDQIVSKAAYVLFYQR 903
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 266 bits (681), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 222/378 (58%), Gaps = 32/378 (8%)
Query: 247 QTTQFLMNDRV-----TMSDDFSAKPGEEVFLQLQVHGFSDSVGETNDEMAEHYKIIDS- 300
T QF D + T + F +P E+ L + +S G + H ++D+
Sbjct: 211 HTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAK-----NSEGSLDRLYDTHITVLDAA 265
Query: 301 ------ICNGSVKINGSNDNLNSYITSSNSVRRG---SGNGGVCLLGLTGLRNLGNTCFM 351
I + K +G+ + ++ ++N G G+C GL NLGNTCFM
Sbjct: 266 LETGQLIIMETRKKDGTWPSAQLHVMNNNMSEEDEDFKGQPGIC-----GLTNLGNTCFM 320
Query: 352 NSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPR 410
NSA+QCL++ P++ +YFL + Y +E+N+ NPLG+ GE+A A+ DL+++ W+ + P
Sbjct: 321 NSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPH 380
Query: 411 MFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAE 470
+FK K+ +FA QF GY QHDSQE L+FLLDGLHEDLNRVK K Y+E DA G+P++EVA+
Sbjct: 381 VFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQ 440
Query: 471 EYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTV 530
E W+NH+ RNDS+IVD G ++S LVCP C VSVTFDP YLS+P+P + R + V
Sbjct: 441 EAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPISHKRVLEVFF 500
Query: 531 LSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRV--LDEP 588
+ D P + VPK G+ DL ALS + + E+++VA+++ + +++ L+EP
Sbjct: 501 IPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGI-SPERMMVADVFSHRFYKLYQLEEP 559
Query: 589 SDLLGLIRDEDKLVAYRL 606
L I D D + Y +
Sbjct: 560 ---LSSILDRDDIFVYEV 574
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 122/196 (62%), Gaps = 12/196 (6%)
Query: 746 AKPLTIHVQWAEKMIEKY--DTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPL 803
A+P I + W +M ++Y + + C + + P V L +C+E F E L
Sbjct: 739 AQPY-IAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKAP---VRLQECIELFTTVETL 794
Query: 804 GPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDL 863
E+ WYCP CK+H A+KKLDLW P+IL+IHLKRFS++++ + KLDT V+FPI DLD
Sbjct: 795 EKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRDLDF 854
Query: 864 SNYVCCKNSQLSN----RYVLYAISNHYGGMGGGHYTAFV-DLGHKRWFEFDDDRVYPVS 918
S +V ++ SN +Y L A+SNHYGGM GHYT F + +W FDD+ V PV+
Sbjct: 855 SEFVIQPQNE-SNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVN 913
Query: 919 EDNIKTSAAYVLFYKR 934
E+ I++ AAYVLFY+R
Sbjct: 914 ENQIESKAAYVLFYQR 929
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 262 bits (670), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 132/278 (47%), Positives = 182/278 (65%), Gaps = 8/278 (2%)
Query: 330 GNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGEL 388
G G+C GL NLGNTCFMNSA+QCL++ P++ +YFL + Y +E+N+ NPLG+ GEL
Sbjct: 252 GQPGIC-----GLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGEL 306
Query: 389 ALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNR 448
A A+ DL+++ W+ + P +FK K+ +FA QF GY QHDSQE L+FLLDGLHEDLNR
Sbjct: 307 AEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNR 366
Query: 449 VKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTF 508
VK K Y+E + G+P+ EVA+E W+NH+ RNDS+IVD G ++S LVCP C VSVTF
Sbjct: 367 VKKKEYVELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTF 426
Query: 509 DPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNH 568
DP YLS+P+P + R + V + D P V VPK G DL ALST +
Sbjct: 427 DPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVAP- 485
Query: 569 EKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRL 606
+K++VA+++ + ++ L + D L I D D + Y +
Sbjct: 486 DKMIVADVFSHRFYK-LYQLEDPLSGILDRDDIFVYEV 522
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 101/151 (66%), Gaps = 4/151 (2%)
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
V L +C++ F E L E+ WYC CK+H A+KKLDLW P++L+IHLKRFSFS+ +
Sbjct: 738 VQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISR 797
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSN---RYVLYAISNHYGGMGGGHYTAFV-DLGH 903
KLDT V FPI DLD S +V ++ S +Y L A+SNHYGGM GHYT F +
Sbjct: 798 EKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDS 857
Query: 904 KRWFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
+W FDD+ V PV+E+ I++ AAYVLFY+R
Sbjct: 858 GQWHYFDDNSVSPVNENQIESKAAYVLFYQR 888
>sp|O60079|UBP12_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp12 PE=1 SV=1
Length = 979
Score = 260 bits (665), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 146/336 (43%), Positives = 204/336 (60%), Gaps = 11/336 (3%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
G GL NLGNTC+MNSA+QCL HT E+ D+F D ++ ++N NPLG+ G++A F L+
Sbjct: 309 GTCGLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESNPLGMGGQVASIFASLI 368
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+ L++P APR FK + F F GY Q DSQEFLAFLLDGLHEDLNR+ KPY
Sbjct: 369 KSLYSPEHSSFAPRQFKATIGKFNHSFLGYGQQDSQEFLAFLLDGLHEDLNRIYQKPYTS 428
Query: 457 AKDAEGQPEEEV---AEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMY 513
D EE++ AEE WR H+ RNDS+IVDL QG YRS LVCPVCN VS+TFDP M
Sbjct: 429 KPDLYEVDEEKIKNTAEECWRLHKLRNDSLIVDLFQGMYRSTLVCPVCNTVSITFDPFMD 488
Query: 514 LSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTV-PKYGRFQDLIDALSTKCFLRNHEKLL 572
L+LP+P + + TVT + D + P V + K +DL+ ++ K ++ K+L
Sbjct: 489 LTLPLPVKQVWSHTVTFIPADTNLTPLAIEVVLESKAATIEDLVKYVAEKSGCSDYRKIL 548
Query: 573 VAEIYRSKIFRVLDEPS-DLLGLIRDEDKLVAYRL--PKDSETPSLVLFMHERKEESCHL 629
V E Y+ + +R L + S LL I +ED++ Y L P + + +++ ++ ++S +
Sbjct: 549 VTETYKGRFYRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHISDDSTNS 608
Query: 630 GRLSLEWKIFGTPLVGRLSD--LTNGSDI-RKLFLK 662
+ + FG P V +LSD +T+ S I KL LK
Sbjct: 609 ANSYMSSRDFGHPFVLQLSDNEVTDASFISEKLKLK 644
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 105/153 (68%), Gaps = 5/153 (3%)
Query: 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF 846
+++L CL+ F K E LG ED WYCP CK+ QASK++++WR P+IL+ HLKRFS R F
Sbjct: 824 TITLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQASKQMEIWRCPEILIFHLKRFSSERRF 883
Query: 847 KSKLDTYVDFPIDDLDLS----NYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV-DL 901
+ K+D V+FPID+LD+S +Y + Y LYA+ NHYGG+GGGHYTAF +
Sbjct: 884 RDKIDDLVEFPIDNLDMSMRTGSYKLSEKENPKLIYELYAVDNHYGGLGGGHYTAFAKNP 943
Query: 902 GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
+ +++ FDD RV PV + TSAAY+LFY+R
Sbjct: 944 DNGQFYCFDDSRVTPVCPEETVTSAAYLLFYRR 976
>sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19
PE=1 SV=2
Length = 1318
Score = 253 bits (645), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 178/275 (64%), Gaps = 5/275 (1%)
Query: 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAF 392
VCL G TGL NLGNTCFMNS IQ L++T E+ D+F ++ EINY NPLG G LA+ F
Sbjct: 491 VCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGF 550
Query: 393 GDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCK 452
LLR LW P K +A+ A QF+GY QHD+QEF+AFLLDGLHEDLNR++ K
Sbjct: 551 AVLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNK 610
Query: 453 PYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLM 512
PY E D++G+P+E VAEE W+ H+ RNDS IVDL QGQY+S LVCPVC KVS+TFDP +
Sbjct: 611 PYTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFL 670
Query: 513 YLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGR-FQDLIDALSTKCFLRNHEKL 571
YL +P+P + + V + + + P F V+V K +++D+LS ++ E L
Sbjct: 671 YLPVPLPQ-KQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVKP-ENL 728
Query: 572 LVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRL 606
+AE+ +++ RV PS L + D L+ + L
Sbjct: 729 RLAEVIKNRFHRVF-LPSHSLDTVSPSDTLLCFEL 762
Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 98/155 (63%), Gaps = 9/155 (5%)
Query: 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY-FK 847
+L +CL F + E L PE+ WYCP+CK+H +ASK+L LWR P++L++ LKRFSF + ++
Sbjct: 1059 TLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWR 1118
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKR-- 905
K++ V+FP+ +LDLS + + + Y LYA+ NHYGGM GGHYTA L + R
Sbjct: 1119 DKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSS 1178
Query: 906 ------WFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
W FDD V V E + T AYVLFY+R
Sbjct: 1179 QRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1213
>sp|Q3UJD6|UBP19_MOUSE Ubiquitin carboxyl-terminal hydrolase 19 OS=Mus musculus GN=Usp19
PE=2 SV=1
Length = 1360
Score = 253 bits (645), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 136/295 (46%), Positives = 189/295 (64%), Gaps = 7/295 (2%)
Query: 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAF 392
VCL G TGL NLGNTCFMNS IQ L++T E+ D+F ++ EINY NPLG G LA+ F
Sbjct: 533 VCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGF 592
Query: 393 GDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCK 452
LLR LW P K +A+ A QF+GY QHD+QEF+AFLLDGLHEDLNR++ K
Sbjct: 593 AVLLRALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNK 652
Query: 453 PYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLM 512
PY E D++G+P+E VAEE W+ H+ RNDS IVDL QGQY+S LVCPVC KVS+TFDP +
Sbjct: 653 PYTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFL 712
Query: 513 YLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKY-GRFQDLIDALSTKCFLRNHEKL 571
YL +P+P + + + + + + P F V+V K +++D+LS ++ E L
Sbjct: 713 YLPVPLPQ-KQKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVKP-ENL 770
Query: 572 LVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRL--PKDSETPSLVLFMHERKE 624
+AE+ +++ RV PS L + D L+ + L P+ ++ +VL + +R +
Sbjct: 771 RLAEVIKNRFHRVF-LPSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 824
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 98/155 (63%), Gaps = 9/155 (5%)
Query: 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY-FK 847
+L +CL F + E L PE+ WYCP+CK+H +ASK+L LWR P++L++ LKRFSF + ++
Sbjct: 1101 TLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWR 1160
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKR-- 905
K++ V+FP+ +LDLS + + + Y LYA+ NHYGGM GGHYTA L + R
Sbjct: 1161 DKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSS 1220
Query: 906 ------WFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
W FDD V V E + T AYVLFY+R
Sbjct: 1221 QRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1255
>sp|Q6J1Y9|UBP19_RAT Ubiquitin carboxyl-terminal hydrolase 19 OS=Rattus norvegicus
GN=Usp19 PE=1 SV=1
Length = 1357
Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/295 (45%), Positives = 189/295 (64%), Gaps = 7/295 (2%)
Query: 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAF 392
VCL G TGL NLGNTCFMNS IQ L++T E+ D+F ++ EINY NPLG G LA+ F
Sbjct: 530 VCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGF 589
Query: 393 GDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCK 452
LLR LW P K +A+ A QF+GY QHD+QEF+AFLLDGLHEDLNR++ K
Sbjct: 590 AVLLRALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNK 649
Query: 453 PYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLM 512
PY E D++G+P+E VAEE W+ H+ RNDS IVDL QGQY+S LVCPVC KVS+TFDP +
Sbjct: 650 PYTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFL 709
Query: 513 YLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKY-GRFQDLIDALSTKCFLRNHEKL 571
YL +P+P + + + + + + P F V+V K +++++LS ++ E L
Sbjct: 710 YLPVPLPQ-KQKVLPIYYFAREPHSKPIKFLVSVSKENSSASEVLESLSQSVHVKP-ESL 767
Query: 572 LVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRL--PKDSETPSLVLFMHERKE 624
+AE+ +++ RV PS L + D L+ + L P+ ++ +VL + +R +
Sbjct: 768 RLAEVIKNRFHRVF-LPSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQ 821
Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 9/155 (5%)
Query: 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY-FK 847
+L +CL F + E L PE+ WYCP+CK+H +ASK+L LWR P++L++ LKRFSF + ++
Sbjct: 1098 TLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWR 1157
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKR-- 905
K++ V+FP+ +LDLS + + + Y LYA+ NHYGGM GGHYTA L R
Sbjct: 1158 DKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPSDRSS 1217
Query: 906 ------WFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
W FDD V V E + T AYVLFY+R
Sbjct: 1218 QRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1252
>sp|Q8NFA0|UBP32_HUMAN Ubiquitin carboxyl-terminal hydrolase 32 OS=Homo sapiens GN=USP32
PE=1 SV=1
Length = 1604
Score = 236 bits (602), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 165/483 (34%), Positives = 250/483 (51%), Gaps = 55/483 (11%)
Query: 134 ILLHLK-KKEGSVDSD-------------CGEGG--------VSVREYALVPEGMWLRAL 171
ILLHL +K G++D+ EGG + R+Y +VPE +W
Sbjct: 512 ILLHLNPQKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALY 571
Query: 172 KWHNDSKAAVKDFGSSFAAD--EQDVFP-----LQIRLSVSQETNSLLVKISLEDNKVDL 224
W+ + A + + D E ++FP L+ + + + +++ V + +
Sbjct: 572 HWYGANLALPRPVIKNSKTDIPELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAP 631
Query: 225 YKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSDSV 284
KR S M I + +Q L R+ D E +L L
Sbjct: 632 LKRVLAYTGCFSRMQTIKEIHEYLSQRL---RIKEEDMRLWLYNSENYLTLL-------- 680
Query: 285 GETNDEMAEHYKIIDSICNGSVKINGSNDNLN-----SYITSSNSVRRGSGNGGVCLLGL 339
+ D E+ KI D + I N +++ S+I +S+ + R + G
Sbjct: 681 -DDEDHKLEYLKIQDE---QHLVIEVRNKDMSWPEEMSFIANSSKIDR---HKVPTEKGA 733
Query: 340 TGLRNLGNTCFMNSAIQCLAHTPEIVDYFL-GDYQKEINYENPLGLNGELALAFGDLLRK 398
TGL NLGNTCFMNS+IQC+++T + YF+ G + E+N NP+G+ G +A +GDL+++
Sbjct: 734 TGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQE 793
Query: 399 LWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAK 458
LW+ VAP + +A +AP+F+G+ Q DSQE LAFLLDGLHEDLNRV KPY+E K
Sbjct: 794 LWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELK 853
Query: 459 DAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPI 518
D++G+P+ EVA E W NH RN SI+VDL GQ RS + C C +SV FDP +LSLP+
Sbjct: 854 DSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPL 913
Query: 519 PSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578
P + + +TV+ DG+T P + + + ++ L LS C L N E++L+AE++
Sbjct: 914 PMDSYMHLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLSDLCGL-NSEQILLAEVHG 971
Query: 579 SKI 581
S I
Sbjct: 972 SNI 974
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 782 RMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFS 841
R E ++L CL AF EE LG +M+YC +CK H A+KKLDLWR P IL+IHLKRF
Sbjct: 1227 RAQAEPINLDSCLRAFTSEEELGENEMYYCSKCKTHCLATKKLDLWRLPPILIIHLKRFQ 1286
Query: 842 F--SRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQL 874
F R+ KS+ V FP + D S ++ ++ L
Sbjct: 1287 FVNGRWIKSQ--KIVKFPRESFDPSAFLVPRDPAL 1319
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 870 KNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYV 929
+++++ Y LYAIS H G +GGGHY + + +W+ ++D + D I T +AY+
Sbjct: 1502 EDTRIKPIYNLYAISCHSGILGGGHYVTYAKNPNCKWYCYNDSSCKELHPDEIDTDSAYI 1561
Query: 930 LFYKR 934
LFY++
Sbjct: 1562 LFYEQ 1566
>sp|P35125|UBP6_HUMAN Ubiquitin carboxyl-terminal hydrolase 6 OS=Homo sapiens GN=USP6
PE=1 SV=2
Length = 1406
Score = 232 bits (592), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 162/245 (66%), Gaps = 3/245 (1%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFL-GDYQKEINYENPLGLNGELALAFGDLL 396
G TGL NLGNTCFMNS+IQC+++T + YF+ G + E+N NP+G+ G +A +GDL+
Sbjct: 530 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLV 589
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
++LW+ VAP + +A +AP+F G+ Q DSQE LAFLLDGLHEDLNRV KPY+E
Sbjct: 590 QELWSGTQKSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVE 649
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
KD++G+P+ EVA E W NH RN SIIVDL GQ RS + C C +SV FDP +LSL
Sbjct: 650 LKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSL 709
Query: 517 PIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEI 576
P+P + + +TV+ DG+T P + + + ++ L L C L N E++L+AE+
Sbjct: 710 PLPMDSYMDLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLRDLCGL-NSEQILLAEV 767
Query: 577 YRSKI 581
+ S I
Sbjct: 768 HDSNI 772
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 748 PLTIHVQWA---EKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLG 804
P +H+++ E++++K+++ S R E ++L CL AF EE LG
Sbjct: 999 PTALHLRYQTSQERVVDKHESVEQSR-----------RAQAEPINLDSCLRAFTSEEELG 1047
Query: 805 PEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLS 864
+M+YC +CK H A+KKLDLWR P L+IHLKRF F K V F + D S
Sbjct: 1048 ESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFLRESFDPS 1107
Query: 865 NYVCCKNSQLSNRYVL 880
++ ++ L L
Sbjct: 1108 AFLVPRDPALCQHKPL 1123
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 870 KNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYV 929
+++ + Y LYAIS H G + GGHY + + +W+ ++D + D I T +AY+
Sbjct: 1304 EDTHIKPIYNLYAISCHSGILSGGHYITYAKNPNCKWYCYNDSSCEELHPDEIDTDSAYI 1363
Query: 930 LFYKR 934
LFY++
Sbjct: 1364 LFYEQ 1368
>sp|Q9USM5|UBP1_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp1 PE=3 SV=1
Length = 849
Score = 213 bits (542), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 161/281 (57%), Gaps = 19/281 (6%)
Query: 337 LGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDL 395
+GL GL NLGN+C+MNSA+QC+ HT E+ YFL D Y+K+INY NPLG+ G++AL++ L
Sbjct: 276 IGLCGLYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEKDINYNNPLGMMGKVALSYASL 335
Query: 396 LRKLWAPGGI-PVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY 454
L+ + + V+P FK + F FSGY Q DSQEF+AF LDGLHEDLNR++ KPY
Sbjct: 336 LKMIHHTADMHSVSPSSFKFIIGEFNTYFSGYRQQDSQEFIAFFLDGLHEDLNRIQIKPY 395
Query: 455 LEAKDA-EGQP--EEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPL 511
E D + P + VA + W H RNDSIIV L QG Y+S L C +C + S FDP
Sbjct: 396 FERPDLFDEHPLHVQRVANQCWDIHTKRNDSIIVQLFQGMYKSTLECSICYQKSTAFDPF 455
Query: 512 MYLSLPIPSTTMRTMTVTVLSTDGSTMPAPF--------TVTVPKYGRFQDLIDALSTKC 563
MYL+LP+P++ V + G+ P TV K+ + L + +C
Sbjct: 456 MYLTLPLPTSAKWRHKVVYVPPFGTQSPVELYLELLMESTVIQMKFQATEKL-QKMGLEC 514
Query: 564 FLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAY 604
+L +IYR K+++VL + I D +V Y
Sbjct: 515 -----GELTACDIYRGKVYKVLKNKDKISKKIHKWDHVVLY 550
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 11/159 (6%)
Query: 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS-- 843
ES++L CL F K E L +D WYCP CK A+K+L++WR P ILVIHL RFS
Sbjct: 688 ESITLEDCLLEFSKPEQLDLQDSWYCPGCKAFRPATKRLEIWRLPKILVIHLNRFSGHGG 747
Query: 844 -RYFKSKLDTYVDFPIDDLDLSNYVC-------CKNSQLSNRYVLYAISNHYGGMGGGHY 895
+ K V +P+ DL+L ++ +SQ S Y LYA+ NH+G M GHY
Sbjct: 748 DLRRRRKRRDLVVYPVFDLNLKQFLSPFIKDHEWLSSQKSMLYDLYAVDNHHGFMSNGHY 807
Query: 896 TAFV-DLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 933
TA+ D + +F+FDD + + ++I TS+AYVLFY+
Sbjct: 808 TAYARDASSQTFFKFDDTAICEIDPEDIVTSSAYVLFYR 846
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP12 PE=1
SV=1
Length = 1254
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/371 (37%), Positives = 192/371 (51%), Gaps = 38/371 (10%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
G TGL NLGNTC+MNSA+QCL H P++ DYFL D Y+ EIN ENPLG +G +A AF DL+
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421
Query: 397 RKLWA------PGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVK 450
+KL+ P MFK + +F FSGY Q DSQEFLAFLLD LHEDLNR+
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481
Query: 451 CKPYLEAKDAEGQPE-------EEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNK 503
K Y E + +++A++ W H RN S+I DL G Y+S L CP C
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541
Query: 504 VSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKC 563
VS+TFDP ++LP+P T+ T+ + + P V + K + DL + +
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKSSTYMDLKNYVGKMS 599
Query: 564 FLRNHEKLLVAEIYRSKIFRVLDEPSD------LLGLIRDEDKLVAYRLPKDSETPSLVL 617
L + L EI+ ++I+ + L LI+ D ++ Y LP ++ +V
Sbjct: 600 GL-DPNTLFGCEIFSNQIYVNYESTESNAQFLTLQELIKPADDVIFYELPVTNDNEVIVP 658
Query: 618 FMHERKEESCHLGRLSLEWKIFGTPLVGRLS--DLTNGSDIR-KLFLKLLD------PFL 668
++ R E+ L FG P L +L N IR KL + + PF
Sbjct: 659 VLNTRIEKGYKNAML------FGVPFFITLKEDELNNPGAIRMKLQNRFVHLSGGYIPFP 712
Query: 669 MPVGDDSDFSD 679
PVG+ +DF+D
Sbjct: 713 EPVGNRTDFAD 723
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF 846
+++L CL+ F K E LG D WYCP CK+H QA+K++ LW +PDIL+IHLKRF R F
Sbjct: 961 TITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSF 1020
Query: 847 KSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV-DLGHKR 905
K+D V+FPI DLDLS YV K+ Y LYA+ NHYGG+GGGHYTA+V + +
Sbjct: 1021 SDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFADNK 1080
Query: 906 WFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
W+ FDD RV + +N +AY+LFY R
Sbjct: 1081 WYYFDDSRVTETAPENSIAGSAYLLFYIR 1109
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8
PE=1 SV=1
Length = 1118
Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 132/211 (62%), Gaps = 7/211 (3%)
Query: 317 SYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKE 375
S I + N V GSG LTGLRNLGNTC+MNS +QCL + P + DYF + YQ +
Sbjct: 760 SQIRNLNPVFGGSGPA------LTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDD 813
Query: 376 INYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFL 435
IN N LG GE+A FG +++ LW ++P+ FK+ + QF+GY+Q DSQE L
Sbjct: 814 INRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELL 873
Query: 436 AFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495
FL+DGLHEDLN+ + + ++ + + + AE W+ H+ N+SIIV L QGQ++S
Sbjct: 874 LFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKST 933
Query: 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTM 526
+ C C+K S TF+ MYLSLP+ ST+ T+
Sbjct: 934 VQCLTCHKKSRTFEAFMYLSLPLASTSKCTL 964
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 104/155 (67%), Gaps = 6/155 (3%)
Query: 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKS 848
+L CL F KEE L + +YC C+ + KK+++W+ P +L++HLKRFS+ +K
Sbjct: 963 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 1022
Query: 849 KLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV-DLGHKRWF 907
KL T VDFP+++LDLS YV + L +Y L+++SNHYGG+ GGHYTA+ + +RWF
Sbjct: 1023 KLQTSVDFPLENLDLSQYVIGPKNNL-KKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWF 1081
Query: 908 EFDDDRVYPVSEDNIKTSAAYVLFYK----RVSDV 938
+FDD V +S ++K+SAAY+LFY RV+DV
Sbjct: 1082 KFDDHEVSDISVSSVKSSAAYILFYTSLGPRVTDV 1116
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8
PE=1 SV=2
Length = 1080
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 130/211 (61%), Gaps = 7/211 (3%)
Query: 317 SYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKE 375
S I + N V GSG LTGLRNLGNTC+MNS +QCL + P + DYF + YQ +
Sbjct: 722 SQIRNLNPVFGGSGPA------LTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDD 775
Query: 376 INYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFL 435
IN N LG GE+A FG +++ LW ++P+ FK+ + QF+G +Q DSQE L
Sbjct: 776 INRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELL 835
Query: 436 AFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495
FL+DGLHEDLN+ + + ++ E + + AE W+ H+ N+SIIV L QGQ++S
Sbjct: 836 LFLMDGLHEDLNKADNRKRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKST 895
Query: 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTM 526
+ C C + S TF+ MYLSLP+ ST+ T+
Sbjct: 896 VQCLTCRRRSRTFEAFMYLSLPLASTSKCTL 926
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 104/155 (67%), Gaps = 6/155 (3%)
Query: 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKS 848
+L CL F KEE L + +YC C+ + KK+++W+ P +L++HLKRFS+ +K
Sbjct: 925 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 984
Query: 849 KLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV-DLGHKRWF 907
KL T VDFP+++LDLS YV + L +Y L+++SNHYGG+ GGHYTA+ + +RWF
Sbjct: 985 KLQTSVDFPLENLDLSQYVIGPKNSL-KKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWF 1043
Query: 908 EFDDDRVYPVSEDNIKTSAAYVLFYK----RVSDV 938
+FDD V +S ++++SAAY+LFY R++DV
Sbjct: 1044 KFDDHEVSDISVSSVRSSAAYILFYTSLGPRITDV 1078
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 4/184 (2%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GLTGLRNLGNTCFMNS +QCL++T E+ DY L + Y +++N N + L F L+
Sbjct: 17 GLTGLRNLGNTCFMNSILQCLSNTKELRDYCLQNQYLRDLN--NNSRMRTALMSEFAKLI 74
Query: 397 RKLWAPG-GIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYL 455
+ LW V+P FK ++ +AP+F GYNQ D+QEFL FLLDGLH ++NRV +P
Sbjct: 75 QLLWTSSPNDSVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHGEVNRVLVRPRA 134
Query: 456 EAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLS 515
A + P++E + + WR ++ R DS + DL GQ +S L C C S FDP LS
Sbjct: 135 NADTLDHLPDDEKSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDPFWDLS 194
Query: 516 LPIP 519
LPIP
Sbjct: 195 LPIP 198
Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 91/152 (59%), Gaps = 7/152 (4%)
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
V+L CL F KE+ L ++ C RCK + +KK + + P ILV+HLKRFS +R
Sbjct: 205 VTLMDCLRLFTKEDVLDGDEKPTCCRCKARTRCTKKFSIQKFPKILVLHLKRFSEARIRA 264
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNR--YVLYAISNHYGGMGGGHYTAFVDLG-HK 904
SKL T+V+FP+ DLDL + SQ N Y LYA+SNH G GGHYTA+
Sbjct: 265 SKLTTFVNFPLKDLDLREFA----SQSCNHAVYNLYAVSNHSGTTMGGHYTAYCKSPISS 320
Query: 905 RWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 936
W F+D RV P+S ++++S AY+LFY+ S
Sbjct: 321 EWHSFNDSRVTPMSSSHVRSSDAYLLFYELAS 352
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 115/186 (61%), Gaps = 10/186 (5%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALA--FGD 394
GL GLRNLGNTCFMNS +QCL++T E+ DY L Y +++++ G N AL F
Sbjct: 265 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH----GSNAHTALVEEFAK 320
Query: 395 LLRKLW--APGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCK 452
L++ +W +P + V+P FK ++ +AP+F GYNQ D+QEFL FLLDGLH ++NRV +
Sbjct: 321 LIQTIWTSSPNDV-VSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLR 379
Query: 453 PYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLM 512
P ++ + P++E + WR + R DS I DL GQ +S L C C S FDP
Sbjct: 380 PKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 439
Query: 513 YLSLPI 518
LSLPI
Sbjct: 440 DLSLPI 445
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 92/155 (59%), Gaps = 8/155 (5%)
Query: 785 PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR 844
PE V+L C+ F KE+ L ++ C RC+ + KK + R P ILV+HLKRFS SR
Sbjct: 451 PE-VTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESR 509
Query: 845 YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNR--YVLYAISNHYGGMGGGHYTAFV-DL 901
SKL T+V+FP+ DLDL + S+ +N Y LYA+SNH G GGHYTA+
Sbjct: 510 IRTSKLTTFVNFPLRDLDLREFA----SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSP 565
Query: 902 GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 936
G W F+D V P+S ++TS AY+LFY+ S
Sbjct: 566 GTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 600
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/184 (44%), Positives = 112/184 (60%), Gaps = 6/184 (3%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GLRNLGNTCFMNS +QCL++T E+ DY L Y +++ + + + L F L+
Sbjct: 273 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTS--SAHTALMEEFAKLI 330
Query: 397 RKLW--APGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY 454
+ +W +P + V+P FK ++ +AP+F GYNQ D+QEFL FLLDGLH ++NRV +P
Sbjct: 331 QTIWTSSPNDV-VSPSEFKTQIQRYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVAARPK 389
Query: 455 LEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYL 514
+ + P+EE + WR + R DS I DL GQ +S L C C S FDP L
Sbjct: 390 ASPETLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDL 449
Query: 515 SLPI 518
SLPI
Sbjct: 450 SLPI 453
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 91/155 (58%), Gaps = 8/155 (5%)
Query: 785 PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR 844
PE V+L C+ F KE+ L ++ C RC+ + KK + R P ILV+HLKRFS SR
Sbjct: 459 PE-VTLMDCMRLFTKEDILDGDEKPTCCRCRARKRCIKKFSVQRFPKILVLHLKRFSESR 517
Query: 845 YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNR--YVLYAISNHYGGMGGGHYTAFVDLG 902
SKL T+V+FP+ DLDL + S+ +N Y LYA+SNH G GGHYTA+
Sbjct: 518 IRTSKLTTFVNFPLRDLDLREFA----SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSP 573
Query: 903 -HKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 936
W F+D V P+S ++TS AY+LFY+ S
Sbjct: 574 VTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 608
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/184 (44%), Positives = 112/184 (60%), Gaps = 6/184 (3%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GLRNLGNTCFMNS +QCL++T E+ DY L Y +++ + + + L F L+
Sbjct: 278 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTS--SAHTALMEEFAKLI 335
Query: 397 RKLW--APGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY 454
+ +W +P + V+P FK ++ +AP+F GYNQ D+QEFL FLLDGLH ++NRV +P
Sbjct: 336 QTIWTSSPNDV-VSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVAARPK 394
Query: 455 LEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYL 514
+ + P+EE + WR + R DS I DL GQ +S L C C S FDP L
Sbjct: 395 PSPESLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDL 454
Query: 515 SLPI 518
SLPI
Sbjct: 455 SLPI 458
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 91/155 (58%), Gaps = 8/155 (5%)
Query: 785 PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR 844
PE V+L C+ F KE+ L ++ C RC+ + KK + R P ILV+HLKRFS SR
Sbjct: 464 PE-VTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSVQRFPKILVLHLKRFSESR 522
Query: 845 YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNR--YVLYAISNHYGGMGGGHYTAFVDLG 902
SKL T+V+FP+ DLDL + S+ +N Y LYA+SNH G GGHYTA+
Sbjct: 523 IRTSKLTTFVNFPLRDLDLREFA----SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSP 578
Query: 903 -HKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 936
W F+D V P+S ++TS AY+LFY+ S
Sbjct: 579 VTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 613
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 114/184 (61%), Gaps = 6/184 (3%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
GL GLRNLGNTCFMNS +QCL++T E+ DY L Y +++++ + + L F L+
Sbjct: 266 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSS--RAHTALMEEFAKLI 323
Query: 397 RKLW--APGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY 454
+ +W +P + V+P FK ++ +AP+F GYNQ D+QEFL FLLDGLH ++NRV +P
Sbjct: 324 QTIWTSSPNDV-VSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVIARPK 382
Query: 455 LEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYL 514
++ + P++E + WR + R DS I DL GQ +S L C C S FDP L
Sbjct: 383 SNTENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDL 442
Query: 515 SLPI 518
SLPI
Sbjct: 443 SLPI 446
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 785 PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR 844
PE V+L C+ F KE+ L ++ C RC+ + KK + R P ILV+HLKRFS SR
Sbjct: 452 PE-VTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSIQRFPKILVLHLKRFSESR 510
Query: 845 YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLG-H 903
SKL +V+FP+ DLDL + + Y LYA+SNH G GGHYTA+
Sbjct: 511 IRTSKLTAFVNFPLRDLDLREFASENTNHAV--YNLYAVSNHSGTTMGGHYTAYCRSPVT 568
Query: 904 KRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 936
W F+D V P+S ++TS AY+LFY+ S
Sbjct: 569 GEWHTFNDSSVSPMSSSQVRTSDAYLLFYELAS 601
>sp|Q01988|UBP11_CANFA Ubiquitin carboxyl-terminal hydrolase 11 (Fragment) OS=Canis
familiaris GN=USP11 PE=2 SV=1
Length = 445
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 14/197 (7%)
Query: 746 AKPLTIHVQWAEKMIEKY--DTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPL 803
A+P I + W +M ++Y + + C + + P V L +C+E F E L
Sbjct: 221 AQPY-IAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVLKKAP---VRLQECIELFTTVETL 276
Query: 804 GPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDL 863
E+ W+CP CK+H A+KKLDLW P+ L+IHLKRFS++++ + KLDT V+FPI DLD
Sbjct: 277 EKENPWFCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTLVEFPIRDLDF 336
Query: 864 SNYVCCKNSQLSN---RYVLYAISNHYGGMGGGHYTAFV---DLGHKRWFEFDDDRVYPV 917
S +V ++ + +Y L A+SNHYGG+ GHYT F D G + FDD+ V PV
Sbjct: 337 SEFVIKPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDSGQSDY--FDDNSVSPV 394
Query: 918 SEDNIKTSAAYVLFYKR 934
+E+ I++ AAYVLFY+R
Sbjct: 395 TENQIESKAAYVLFYQR 411
>sp|B3LGK1|UBP4_YEAS1 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=DOA4 PE=3 SV=1
Length = 926
Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 106/196 (54%), Gaps = 12/196 (6%)
Query: 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKL 399
GL NLGN+C+MN IQC+ T E+ FL D Y K IN + LG G LA F L+ +
Sbjct: 563 GLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGSKGILAKYFARLVHMM 622
Query: 400 W-----APGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY 454
+ IP++P FKL + F +Q D QEF FLLDGLHEDLN+ P
Sbjct: 623 YKEQVDGSKKIPISPIKFKLACGSVNSLFKTASQQDCQEFCQFLLDGLHEDLNQCGSNPP 682
Query: 455 LE--AKDAEGQPEE---EVAEEY-WRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTF 508
L+ +++AE + E+ +A W + S+IVDL QGQY S L C VC+ S T+
Sbjct: 683 LKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQGQYASRLKCKVCSHTSTTY 742
Query: 509 DPLMYLSLPIPSTTMR 524
P LS+PIP R
Sbjct: 743 QPFTVLSIPIPKKNSR 758
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF 846
++++ C F K E L ++ W CP C+K ++K+L + R P L++HLKRF
Sbjct: 760 NITIEDCFREFTKCENLEVDEQWLCPHCEKRQPSTKQLTITRLPRNLIVHLKRFD---NL 816
Query: 847 KSKLDTYVDFPI---------DDLDLSNYVCCKNSQLSNR-------YVLYAISNHYGGM 890
+K + +V +P +D D + +L R Y LY ++ H+G +
Sbjct: 817 LNKNNDFVIYPFLLDLTPFWANDFDGVFPPGVNDDELPIRGQIPPFKYELYGVACHFGTL 876
Query: 891 GGGHYTAFVDLGHKR-WFEFDDDRVYPV-SEDNIKTSAAYVLFYKRVSDV 938
GGHYTA+V G K+ W FDD + PV ++ + S AYVLFY RV V
Sbjct: 877 YGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADAINSNAYVLFYHRVYGV 926
>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 OS=Homo sapiens GN=USP31
PE=2 SV=2
Length = 1352
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 140/285 (49%), Gaps = 24/285 (8%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYF-LGDY-----QKEINYENPLGL----NGE 387
G+ GLRN GNTCFMN+ +QCL++T +Y LG Y + + E P G GE
Sbjct: 126 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 185
Query: 388 LALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLN 447
+ L+R LW P R FK ++ A Q+ G +QHD+QEFL +LLD +HEDLN
Sbjct: 186 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 245
Query: 448 RVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARN----DSIIVDLCQGQYRSMLVCPVCNK 503
+ GQP + E + + + +L Q QYRS L CP C K
Sbjct: 246 --------HSVKQSGQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQK 297
Query: 504 VSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKC 563
S TFDP + +SLPIP R + VTV+ + V VP G L +A+S +
Sbjct: 298 QSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMET 357
Query: 564 FLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPK 608
+ +++++ E+Y R + +D L + + D + A+ P+
Sbjct: 358 KIPT-DQIVLTEMYYDGFHRSFCD-TDDLETVHESDCIFAFETPE 400
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 95/177 (53%), Gaps = 24/177 (13%)
Query: 785 PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR 844
P++ +L +C + + KEE L P+D W CP CK+ Q S L LW PD+L+IHLKRF
Sbjct: 593 PQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEG 652
Query: 845 YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLS----------------NR------YVLYA 882
+ KL V FP+ LD++ +V K SQ S R Y LYA
Sbjct: 653 DRRMKLQNMVKFPLTGLDMTPHV-VKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYA 711
Query: 883 ISNHYGGMGGGHYTAFVDLG-HKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSDV 938
+ NH+G M GGHYTA+ W+ FDD V +SED + T AY+LFY+R + +
Sbjct: 712 VCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQRRTAI 768
>sp|A6ZY34|UBP4_YEAS7 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DOA4 PE=3 SV=1
Length = 926
Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 105/196 (53%), Gaps = 12/196 (6%)
Query: 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKL 399
GL NLGN+C+MN IQC+ T E+ FL D Y K IN + LG G LA F L+ +
Sbjct: 563 GLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGSKGILAKYFARLVHMM 622
Query: 400 W-----APGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY 454
+ I ++P FKL + F +Q D QEF FLLDGLHEDLN+ P
Sbjct: 623 YKEQVDGSKKISISPIKFKLACGSVNSLFKTASQQDCQEFCQFLLDGLHEDLNQCGSNPP 682
Query: 455 LE--AKDAEGQPEE---EVAEEY-WRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTF 508
L+ +++AE + E+ +A W + S+IVDL QGQY S L C VC+ S T+
Sbjct: 683 LKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQGQYASRLKCKVCSHTSTTY 742
Query: 509 DPLMYLSLPIPSTTMR 524
P LS+PIP R
Sbjct: 743 QPFTVLSIPIPKKNSR 758
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF 846
++++ C F K E L ++ W CP CKK ++K+L + R P L++HLKRF
Sbjct: 760 NITIEDCFREFTKCENLEVDEQWLCPHCKKRQPSTKQLTITRLPRNLIVHLKRFD---NL 816
Query: 847 KSKLDTYVDFPI---------DDLDLSNYVCCKNSQLSNR-------YVLYAISNHYGGM 890
+K + +V +P +D D + +L R Y LY ++ H+G +
Sbjct: 817 LNKNNDFVIYPFLLDLTPFWANDFDGVFPPGVNDDELPIRGQIPPFKYELYGVACHFGTL 876
Query: 891 GGGHYTAFVDLGHKR-WFEFDDDRVYPV-SEDNIKTSAAYVLFYKRVSDV 938
GGHYTA+V G K+ W FDD + PV ++ + S AYVLFY RV V
Sbjct: 877 YGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADAINSNAYVLFYHRVYGV 926
>sp|P32571|UBP4_YEAST Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DOA4 PE=1 SV=2
Length = 926
Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 105/196 (53%), Gaps = 12/196 (6%)
Query: 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKL 399
GL NLGN+C+MN IQC+ T E+ FL D Y K IN + LG G LA F L+ +
Sbjct: 563 GLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGSKGILAKYFARLVHMM 622
Query: 400 W-----APGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY 454
+ I ++P FKL + F +Q D QEF FLLDGLHEDLN+ P
Sbjct: 623 YKEQVDGSKKISISPIKFKLACGSVNSLFKTASQQDCQEFCQFLLDGLHEDLNQCGSNPP 682
Query: 455 LE--AKDAEGQPEE---EVAEEY-WRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTF 508
L+ +++AE + E+ +A W + S+IVDL QGQY S L C VC+ S T+
Sbjct: 683 LKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQGQYASRLKCKVCSHTSTTY 742
Query: 509 DPLMYLSLPIPSTTMR 524
P LS+PIP R
Sbjct: 743 QPFTVLSIPIPKKNSR 758
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF 846
++++ C F K E L ++ W CP C+K ++K+L + R P L++HLKRF
Sbjct: 760 NITIEDCFREFTKCENLEVDEQWLCPHCEKRQPSTKQLTITRLPRNLIVHLKRFD---NL 816
Query: 847 KSKLDTYVDFPI---------DDLDLSNYVCCKNSQLSNR-------YVLYAISNHYGGM 890
+K + +V +P +D D + +L R Y LY ++ H+G +
Sbjct: 817 LNKNNDFVIYPFLLDLTPFWANDFDGVFPPGVNDDELPIRGQIPPFKYELYGVACHFGTL 876
Query: 891 GGGHYTAFVDLGHKR-WFEFDDDRVYPV-SEDNIKTSAAYVLFYKRVSDV 938
GGHYTA+V G K+ W FDD + PV ++ + S AYVLFY RV V
Sbjct: 877 YGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADAINSNAYVLFYHRVYGV 926
>sp|Q754R5|UBP4_ASHGO Ubiquitin carboxyl-terminal hydrolase 4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=DOA4 PE=3 SV=2
Length = 852
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 104/206 (50%), Gaps = 19/206 (9%)
Query: 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKL 399
GL N GN+C+M+ IQCL T E+ FL + YQ IN + LG G LA F L+ ++
Sbjct: 489 GLVNCGNSCYMSCIIQCLLGTQELCTMFLNNSYQNHINLNSRLGSKGLLARYFSQLIHQM 548
Query: 400 WAPGG----------IPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRV 449
+ G V P FK+ + F Q D QEF FLLDGLHEDLN+
Sbjct: 549 YQYGKDIRKKMGNEKTAVIPTQFKIACGSINSSFKDNTQQDCQEFCQFLLDGLHEDLNQC 608
Query: 450 KCKPYLEAKDAEGQ------PEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNK 503
P L+ E + P + W + + S+IVDL QGQY S L C VC +
Sbjct: 609 GNNPPLKELSEEAEKMREMMPMRLASAIEWERYLTTDFSVIVDLFQGQYASQLQCKVCQR 668
Query: 504 VSVTFDPLMYLSLPIPSTTMRTMTVT 529
S T+ P LS+P+PST RT T+T
Sbjct: 669 TSTTYQPFSVLSVPVPST--RTCTLT 692
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF 846
+ +L C F K E L E+ W CP CKK ++KK+ + R P L+IHLKRF
Sbjct: 688 TCTLTDCFTEFTKIETLEQEEQWSCPSCKKRQPSTKKITITRLPRNLIIHLKRFD---NM 744
Query: 847 KSKLDTYVDFPIDDLDLSNY--------VCCKNSQLSNR-------YVLYAISNHYGGMG 891
+K + +V +P LDL+ + V N +L +R Y LY I+ H G +
Sbjct: 745 LNKNNVFVSYP-SVLDLTAFWANDYDKKVTNNNVELPSRGQVPPFNYQLYGIACHDGTLR 803
Query: 892 GGHYTAFVDLGHK-RWFEFDDDRVYPV-SEDNIKTSAAYVLFYKRV 935
GHYTA+V+ G W +DD + S T AYVLFY R+
Sbjct: 804 AGHYTAYVNKGAVLGWCYYDDTNWRQIRSAREYITQNAYVLFYHRI 849
>sp|Q9HFS7|UBP4_KLULA Ubiquitin carboxyl-terminal hydrolase 4 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=DOA4 PE=3 SV=1
Length = 796
Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 132/265 (49%), Gaps = 25/265 (9%)
Query: 286 ETNDE-MAEHYKII-DSICNGSVKINGSNDNLNSYITSS--NSVRRGSGNGGVCLLGLTG 341
+ NDE +E YK+ + I N + N + N ++S+ NSV + SG+ + L G
Sbjct: 375 QQNDEGNSEPYKLQPNGIKNHRQESNNHANGTNCIVSSNGNNSVAK-SGHPSINLDFAIG 433
Query: 342 LRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLW 400
L NLGN+C++N IQCL E+ FL + Y+K +N + LG G LA F L++K++
Sbjct: 434 LVNLGNSCYLNCIIQCLLGCHELSYIFLTNSYRKHVNVNSRLGSKGLLANYFSQLVQKMY 493
Query: 401 APGGI-----------PVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRV 449
G + V P FKL + F G Q D QEF FLLDGLHEDLN+
Sbjct: 494 QQGKLQAYNNTNMESTAVHPTQFKLACGSINSLFKGKQQQDCQEFCQFLLDGLHEDLNQC 553
Query: 450 KCKPYLEAKDAEGQ------PEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNK 503
P L+ E + P + W + + S+IVDL QGQY S L C +C
Sbjct: 554 GTNPPLKELSPEAEKMRETMPMRIASAIEWERYLTTDFSVIVDLFQGQYASQLRCKICAH 613
Query: 504 VSVTFDPLMYLSLPIPSTTMRTMTV 528
S T+ LS+P+P R+ T+
Sbjct: 614 TSTTYQAFSVLSVPVPRA--RSCTI 636
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 93/167 (55%), Gaps = 21/167 (12%)
Query: 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF 846
S ++Y C + F K E L +++WYCP CK+ ++K++ + R P+ L+IHLKRF
Sbjct: 633 SCTIYDCFKEFTKLETLEKDELWYCPYCKQRQPSTKQIIITRLPNNLIIHLKRFD---NM 689
Query: 847 KSKLDTYVDFPIDDLDLSNY----------------VCCKNSQLSNRYVLYAISNHYGGM 890
+K + +V++P ++LDL+ + + + + Y L+A+++H G +
Sbjct: 690 MNKNNVFVNYP-NELDLTGFWIDDYNGEMPKDNGVSLPLRGQKPPFNYRLFAVASHSGTL 748
Query: 891 GGGHYTAFVDLGHKRWFEFDDDRVYPV-SEDNIKTSAAYVLFYKRVS 936
GGHYT+FVD G W FDD + +D T AYVLFY+RV+
Sbjct: 749 YGGHYTSFVDKGRVGWCSFDDVSWRKIRRKDEYITPNAYVLFYRRVN 795
>sp|A7TGY3|UBP4_VANPO Ubiquitin carboxyl-terminal hydrolase 4 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DOA4 PE=3
SV=1
Length = 882
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 102/194 (52%), Gaps = 15/194 (7%)
Query: 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKL 399
GL N+GN+C+MN IQCL T E+ FL + Y+K IN + LG G LA F L+ +
Sbjct: 520 GLENMGNSCYMNCIIQCLLSTHELSQIFLNNSYEKHINLNSKLGSKGVLAKYFARLVHTM 579
Query: 400 WAPGGI--------PVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKC 451
+ G P+ P FK+ + F Q DSQEF FLLDGLHEDLN+
Sbjct: 580 YREGSFKRPLEKNKPIQPIQFKMACGSINSLFKDNTQQDSQEFCQFLLDGLHEDLNQCGA 639
Query: 452 KPYLE--AKDAEGQPEE---EVAEEY-WRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVS 505
P L+ ++DAE E+ +A W + S+IVDL QGQY S L C VC S
Sbjct: 640 NPPLKELSEDAEKMREKLSMRIASSIEWERFLTTDFSVIVDLFQGQYASQLKCKVCGCTS 699
Query: 506 VTFDPLMYLSLPIP 519
T+ LS+P+P
Sbjct: 700 TTYQTFSVLSVPVP 713
Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 86/170 (50%), Gaps = 22/170 (12%)
Query: 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF 846
S + C F K E LG +++W CP CKK ++KKL + R P L+IHLKRF
Sbjct: 717 SCHILDCFNEFTKVEKLGTDELWSCPTCKKKQPSTKKLTITRLPRNLIIHLKRFD---NM 773
Query: 847 KSKLDTYVDFPIDDLDLSNY----------------VCCKNSQLSNRYVLYAISNHYGGM 890
+K + +V +P LDL+ Y + + RY L A+++H G +
Sbjct: 774 MNKNNVFVKYPF-LLDLTPYWANDFDGRLPPGVTDELPTRGQVPPFRYKLNAVASHVGSL 832
Query: 891 GGGHYTAFVDLGHKR-WFEFDDDRVYPV-SEDNIKTSAAYVLFYKRVSDV 938
GGHYTA+V+ G R W FDD P+ +E T AYVLFY RV V
Sbjct: 833 YGGHYTAYVNKGINRGWHYFDDTSYRPIKNETECITPNAYVLFYHRVYGV 882
>sp|Q6FQF0|UBP4_CANGA Ubiquitin carboxyl-terminal hydrolase 4 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DOA4 PE=3 SV=1
Length = 887
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 101/196 (51%), Gaps = 15/196 (7%)
Query: 340 TGLRNLGNTCFMNSAIQCLAHTPEIVDYFL-GDYQKEINYENPLGLNGELALAFGDLLRK 398
GL N+GN+C++N IQC+ T E++ FL G Y K IN ++ LG G L+ F LL+
Sbjct: 525 VGLENMGNSCYINCIIQCIFATTELIKIFLNGTYAKHINKQSKLGSKGVLSHNFAKLLKD 584
Query: 399 LWAPGGI--------PVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVK 450
++ V FK+ A+ F +Q D EF FLLDGLHEDLN+
Sbjct: 585 MYEENSSKKIGKKHGAVKTLQFKMACASVNSLFKDASQQDCLEFCQFLLDGLHEDLNQCG 644
Query: 451 CKPYLEAKDAEGQPEEE-----VAEEY-WRNHRARNDSIIVDLCQGQYRSMLVCPVCNKV 504
P L+ E + E VA W + + SIIVDL QGQY S L C VCN+
Sbjct: 645 ANPPLKELSPEAEKMRENLSLRVASSIEWERYLTTDFSIIVDLFQGQYASQLRCKVCNRT 704
Query: 505 SVTFDPLMYLSLPIPS 520
S T+ LS+P+PS
Sbjct: 705 STTYQAFSVLSVPVPS 720
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 20/168 (11%)
Query: 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY 845
+S L C F K E L ++ W+CP CKK ++KKL + R P L+IHLKRF
Sbjct: 722 KSCGLLDCFIEFTKTENLEVDEQWFCPSCKKKQPSTKKLTITRLPRNLIIHLKRFD---N 778
Query: 846 FKSKLDTYVDFP-IDDLD--------------LSNYVCCKNSQLSNRYVLYAISNHYGGM 890
+K + +V +P I DL +++ + + Y LY + H+G +
Sbjct: 779 MMNKNNIFVRYPQILDLTPFWANDSDGKLPPGITDEIPARGQVPPFNYRLYGAACHFGTL 838
Query: 891 GGGHYTAFVDLG-HKRWFEFDDDRVYPVS-EDNIKTSAAYVLFYKRVS 936
GGHYT++VD G K W FDD PV ++ + +AYVLFY R++
Sbjct: 839 YGGHYTSYVDKGPEKGWIYFDDTVYRPVRFQNEFISPSAYVLFYHRIT 886
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 107/199 (53%), Gaps = 20/199 (10%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAFGDLL 396
G GLRNLGNTCF+N+ +QCL+ T + D+ L D+++E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 397 RKLWAPGGI-PVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRV--KCKP 453
LW P V P F+ + P FSGY+Q D+QEFL L++ LH ++NR + P
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 454 YLEAKDAEGQP--------EEEVAEE-----YWRNHRARNDSIIVDLCQGQYRSMLVCPV 500
L + A P E E++++ W+ + R DS IVDL GQ +S L C
Sbjct: 327 ILASSPAPHPPRLGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQA 386
Query: 501 CNKVSVTFDPLMYLSLPIP 519
C S TF+ LSLPIP
Sbjct: 387 CGYRSTTFEVFCDLSLPIP 405
Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
VSL C F KEE L E+ C RC++ +++KKL + R P ILV+HL RFS SR
Sbjct: 414 VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSI 473
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWF 907
K VDFP+ L L ++ K S Y LYA+ NH G + GHYTA W
Sbjct: 474 KKSSVGVDFPLQRLSLGDFASDKAG--SPVYQLYALCNHSGSVHYGHYTALCRC-QTGWH 530
Query: 908 EFDDDRVYPVSEDNIKTSAAYVLFYK 933
++D RV PVSE+ + +S YVLFY+
Sbjct: 531 VYNDSRVSPVSENQVASSEGYVLFYQ 556
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 106/199 (53%), Gaps = 20/199 (10%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAFGDLL 396
G GLRNLGNTCF+N+ +QCL+ T + D+ L D+++E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 397 RKLWAPGGI-PVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRV--KCKP 453
LW P V P F+ + P FSGY+Q D+QEFL L++ LH ++NR + P
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 454 YLEAKDAEGQP--------EEEVAEE-----YWRNHRARNDSIIVDLCQGQYRSMLVCPV 500
L + P E E++++ W+ + R DS IVDL GQ +S L C
Sbjct: 327 ILASGPVPSPPRRGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQA 386
Query: 501 CNKVSVTFDPLMYLSLPIP 519
C S TF+ LSLPIP
Sbjct: 387 CGYRSTTFEVFCDLSLPIP 405
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
VSL C F KEE L E+ C RC++ +++KKL + R P ILV+HL RFS SR
Sbjct: 414 VSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSI 473
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWF 907
K VDFP+ L L ++ K S Y LYA+ NH G + GHYTA W
Sbjct: 474 KKSSVGVDFPLQRLSLGDFASDKVG--SPVYQLYALCNHSGSVHYGHYTALCRC-QTGWH 530
Query: 908 EFDDDRVYPVSEDNIKTSAAYVLFYK 933
++D RV PVSE+ + +S YVLFY+
Sbjct: 531 VYNDSRVSPVSENQVASSEGYVLFYQ 556
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 21/200 (10%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAFGDLL 396
G GLRNLGNTCF+N+ +QCL+ T + D+ L D+++E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 397 RKLWAPGGI-PVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRV--KCKP 453
LW P V P F+ + P FSGY+Q D+QEFL L++ LH ++NR + P
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 454 YLEAKDAEGQP---------EEEVAEE-----YWRNHRARNDSIIVDLCQGQYRSMLVCP 499
L + P E E++++ W+ + R DS IVDL GQ +S L C
Sbjct: 327 ILASGPVPSPPRRGGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQ 386
Query: 500 VCNKVSVTFDPLMYLSLPIP 519
C S TF+ LSLPIP
Sbjct: 387 ACGYRSTTFEVFCDLSLPIP 406
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
VSL C F KEE L E+ C RC++ +++KKL + R P ILV+HL RFS SR
Sbjct: 415 VSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSI 474
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWF 907
K VDFP+ L L ++ K S Y LYA+ NH G + GHYTA W
Sbjct: 475 KKSSVGVDFPLQRLSLGDFASDKAG--SPVYQLYALCNHSGSVHYGHYTALCRC-QTGWH 531
Query: 908 EFDDDRVYPVSEDNIKTSAAYVLFYK 933
++D RV PVSE+ + +S YVLFY+
Sbjct: 532 VYNDSRVSPVSENQVASSEGYVLFYQ 557
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 105/199 (52%), Gaps = 20/199 (10%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAFGDLL 396
G GLRNLGNTCF+N+ +QCL+ T + D+ L D+++E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 397 RKLWAPGGI-PVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRV--KCKP 453
LW P V P F+ + P FSGY+Q D+QEFL L++ LH ++NR + P
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 454 YLEAKDAEGQP--------EEEVAEE-----YWRNHRARNDSIIVDLCQGQYRSMLVCPV 500
L P E E++++ W+ + R DS IVDL GQ +S L C
Sbjct: 327 ILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQA 386
Query: 501 CNKVSVTFDPLMYLSLPIP 519
C S TF+ LSLPIP
Sbjct: 387 CGYRSTTFEVFCDLSLPIP 405
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
VSL C F KEE L E+ C RC++ +++KKL + R P ILV+HL RFS SR
Sbjct: 414 VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSI 473
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWF 907
K VDFP+ L L ++ K S Y LYA+ NH G + GHYTA W
Sbjct: 474 KKSSVGVDFPLQRLSLGDFASDKAG--SPVYQLYALCNHSGSVHYGHYTALCRC-QTGWH 530
Query: 908 EFDDDRVYPVSEDNIKTSAAYVLFYK 933
++D RV PVSE+ + +S YVLFY+
Sbjct: 531 VYNDSRVSPVSENQVASSEGYVLFYQ 556
>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43
PE=1 SV=2
Length = 1123
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 23/175 (13%)
Query: 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF 846
S +L +C + + KEE L +D W CP C+ Q KL LW PDIL+IHLKRF
Sbjct: 539 SCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGER 598
Query: 847 KSKLDTYVDFPIDDLDLSNYVCCKNSQ----------------------LSNRYVLYAIS 884
++KL T V FP+ L+++ +V +++ L Y LYA+
Sbjct: 599 RNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDLYAVC 658
Query: 885 NHYGGMGGGHYTAFV-DLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSDV 938
NH+G + GGHYTA+ + +W+ +DD V P+ ED + T AY+LFY++ + +
Sbjct: 659 NHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKRNSI 713
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 131/283 (46%), Gaps = 35/283 (12%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYF-LGDYQKEINYENPLGLNGELALAFGDLL 396
G GL+N GNTCFMN+ +QCL++T + ++ LG Y+ E+ L+
Sbjct: 99 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPG-------RAEVTEQLAALV 151
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
R LW P FK ++ + QF G +QHD+ EFL +LLD +HEDL P E
Sbjct: 152 RALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSE 211
Query: 457 AKDAEGQPEEEVAEEYWRNHRAR---NDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMY 513
PE E + A+ S + Q QYRS L CP C K S TFDP +
Sbjct: 212 KLP----PEATKTSENCLSPSAQLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLC 267
Query: 514 LSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN------ 567
+SLPIP R ++VT++ F ++ R + LST LR
Sbjct: 268 VSLPIPLRQTRFLSVTLV----------FPSKSQRFLRVGLAVPILSTVAALRKMVAEEG 317
Query: 568 ---HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLP 607
+++++ E+Y S R + D L I + D + A+++P
Sbjct: 318 GVPADEVILVELYPSGFQRSFFDEED-LNTIAEGDNVYAFQVP 359
>sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 OS=Mus musculus GN=Usp43
PE=2 SV=2
Length = 1132
Score = 119 bits (299), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 37/221 (16%)
Query: 749 LTIHVQWAEKMIEKYDTCLLSSLME--------VCKPQLFTRMPPESVSLYKCLEAFLKE 800
+ + V+W + E+ L SL E V + Q + P S +L +C +++ KE
Sbjct: 499 VKLAVEWDSSVTER----LFGSLQEERVQDADSVWRQQQAHQQP--SCTLDECFQSYTKE 552
Query: 801 EPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDD 860
E L +D W CP C+ Q KL LW PDIL+IHLKRF ++KL T V FP+
Sbjct: 553 EQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSG 612
Query: 861 LDLSNYVCCKNSQ----------------------LSNRYVLYAISNHYGGMGGGHYTAF 898
L+++ +V +++ L Y LYA+ NH+G + GGHYTA+
Sbjct: 613 LNMAPHVARRSTNSKAGPGPWSSWKQPICLPTTYPLDFLYDLYAVCNHHGSLQGGHYTAY 672
Query: 899 V-DLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSDV 938
+ +W+ +DD V + ED + T AY+LFY++ + +
Sbjct: 673 CRNSLDGQWYSYDDSTVEALREDEVNTRGAYILFYQKRNSI 713
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 130/283 (45%), Gaps = 35/283 (12%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYF-LGDYQKEINYENPLGLNGELALAFGDLL 396
G GL+N GNTCFMN+ +QCL++T + ++ LG Y+ E+ L+
Sbjct: 99 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPG-------RAEVTEQLAALV 151
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
R LW P FK ++ + QF G +QHD+ EFL +LLD +HEDL E
Sbjct: 152 RALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSAHGLVSE 211
Query: 457 AKDAEGQPEEEVAEEYWRNHRARND---SIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMY 513
+ PE E R A S + Q QYRS L CP C K S TFDP +
Sbjct: 212 ----QLPPEVSKISEDLRPSAAPTSLGPSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLC 267
Query: 514 LSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN------ 567
+SLPIP R ++VT++ F ++ R + LST LR
Sbjct: 268 VSLPIPLRQTRFLSVTLV----------FPSKSQRFLRVGLAVPILSTVAALRKMVAEEG 317
Query: 568 ---HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLP 607
E++++ E+Y + R + D L I + D + A+++P
Sbjct: 318 GVPAEEVILVELYPNGFQRSFFDEED-LNTIAEGDNVYAFQVP 359
>sp|P39944|UBP5_YEAST Ubiquitin carboxyl-terminal hydrolase 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP5 PE=1 SV=1
Length = 805
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 102/211 (48%), Gaps = 25/211 (11%)
Query: 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLR 397
+ GL N+GN C+MN +QCL T ++V FL + Y IN+++ G G LA F L+
Sbjct: 445 IVGLENIGNCCYMNCILQCLVGTHDLVRMFLDNTYLNFINFDSSRGSKGLLAKNFAILVN 504
Query: 398 KLWAPGG--------IPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRV 449
+ G IPV FK + P +S Q D QEF FLLDGLHEDLN+
Sbjct: 505 NMHRHGAFTPPNVRTIPVQTIQFKKICGHINPMYSDSMQQDCQEFCQFLLDGLHEDLNQN 564
Query: 450 KCKPYLEAKDAEGQPEEEVAEEY---------WRNHRARNDSIIVDLCQGQYRSMLVCPV 500
K +L+ E EE + E+ W + S I+DL QGQY S L C V
Sbjct: 565 GSKKHLKQLSDE---EERMREKMSIRKASALEWERFLLTDFSAIIDLFQGQYASRLQCQV 621
Query: 501 CNKVSVTFDPLMYLSLPIPSTTMRTMTVTVL 531
C S T+ LS+P+P R T +L
Sbjct: 622 CEHTSTTYQTFSVLSVPVP----RVKTCNIL 648
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 20/166 (12%)
Query: 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY 845
++ ++ C F K E LG ++ W CP+C K ++K+L + R P L+I+LKRF
Sbjct: 643 KTCNILDCFREFTKCERLGVDEQWSCPKCLKKQPSTKQLKITRLPKKLIINLKRFDNQ-- 700
Query: 846 FKSKLDTYVDFPIDDLDLSNY--------------VCCKNSQLSNRYVLYAISNHYGGMG 891
+K + +V +P LDL+ Y + + RY LY ++ H G +
Sbjct: 701 -MNKNNVFVQYPY-SLDLTPYWARDFNHEAIVNEDIPTRGQVPPFRYRLYGVACHSGSLY 758
Query: 892 GGHYTAFVDLGHKR-WFEFDDDRVYPVS-EDNIKTSAAYVLFYKRV 935
GGHYT++V G K+ W+ FDD P++ T +AYVLFY+R+
Sbjct: 759 GGHYTSYVYKGPKKGWYFFDDSLYRPITFSTEFITPSAYVLFYERI 804
>sp|Q5UQR3|UBPL1_MIMIV Probable ubiquitin carboxyl-terminal hydrolase R319 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R319 PE=3 SV=1
Length = 468
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
Query: 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY 845
E +++Y CL + +E L +++W C C + QA KK LW +P +LVI KRF +R
Sbjct: 312 EQLNVYDCLREYFSQETLDADNLWNCEGCHEKVQAIKKTKLWTTPYVLVIQFKRFGMTRI 371
Query: 846 FKSKLDTYVDFPIDDLDLSNYVCCKNSQ--LSNRYVLYAISNHYGGMGGGHYTAFVDLGH 903
+K + ++++P+D+LD+S+ +C + + + +Y L + NH+GG+ GHY + + +
Sbjct: 372 --AKDNRFINYPMDELDVSSVICSQQFEDSVQTKYKLQCVINHHGGLNNGHYFTYSKIEN 429
Query: 904 K-RWFEFDDDRVYPVSEDNIKTSAAYVLFYKR 934
W+EF+D V++++I AY+LFY R
Sbjct: 430 TGEWYEFNDTYTGKVTDNHIVNQNAYILFYIR 461
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 103/286 (36%), Gaps = 87/286 (30%)
Query: 324 SVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDY-FLGDYQ--------- 373
S+ + NG G+TG+ NLGNTC+MNSA+Q L+H +++Y F+ Q
Sbjct: 26 SINKSVDNGSKNTHGITGIMNLGNTCYMNSALQALSHNYLLINYLFMNKKQIIRTLLTNA 85
Query: 374 ------------------------KEINYEN-----------PLGLNGELALAFGDLLRK 398
K+I EN + LN + L
Sbjct: 86 RKIFKDCDNFKIESTISPIPLELRKKIQSENYHLSMLTVEDVNILLNNTITAQIIRLFEC 145
Query: 399 LWAPGGIPVAPRMFKLKLANFAPQ-FSGYNQHDSQEFLAFLLDGLHEDL----------- 446
+W + V P F+ + F GY QHD++E + ++ + E+L
Sbjct: 146 MWKNNCV-VVPTSFRKVFGEVRDKFFFGYEQHDAEEAYSCIIQKMQEELAEKRTIRFKTT 204
Query: 447 ---------------NRVKCKPYLEAKD---------AEGQPEEEVAEEYWRNHRA---R 479
+V C P + KD + P E + E +R + +
Sbjct: 205 RHSVGEYIKYMNDVKEKVSCLPNGKEKDIVMNKFKQIKKQMPRESLTAESFREMKKYYEQ 264
Query: 480 NDSIIVDLCQGQYRSMLVCP--VCNKVSVTFDPLMYLSLPIPSTTM 523
S I ++ G S + CP C + FD +LSL IP M
Sbjct: 265 GYSYITEIFSGYVHSSICCPNTSCGFTNDRFDAFTHLSLSIPVKNM 310
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
V+L CL AF + L ++M+ C +CKK K + P+IL IHLKRF F
Sbjct: 522 VTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQSLPEILCIHLKRFRHELMFS 581
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV-DLGHKRW 906
+K+ T+V FP++ L++ ++ +S L+ Y L ++ H+G GHY A+ + ++ W
Sbjct: 582 TKIGTHVSFPLEGLEMQPFLAKDSSALTTTYDLLSVICHHGTASSGHYIAYCRNELNQLW 641
Query: 907 FEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937
+EFDD V VSE ++ + AYVLFYK+ +D
Sbjct: 642 YEFDDQSVTEVSESCVQNAEAYVLFYKKSND 672
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLR 397
GLTGL+N+GNTC+MN+A+Q L++ P + +FL E L ++ L+
Sbjct: 154 GLTGLKNIGNTCYMNAALQALSNCPPLTQFFL-----ECGGLVKTDKKPALCKSYQKLIT 208
Query: 398 KLWAPG-GIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKP 453
LW V P + P F GY+Q DSQEFL L+D LHE+L + +P
Sbjct: 209 DLWHKNRNAYVVPTNLFQGIKAVNPMFRGYSQQDSQEFLRCLMDQLHEELKELIPEP 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,271,011
Number of Sequences: 539616
Number of extensions: 16280265
Number of successful extensions: 45282
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 43948
Number of HSP's gapped (non-prelim): 824
length of query: 939
length of database: 191,569,459
effective HSP length: 127
effective length of query: 812
effective length of database: 123,038,227
effective search space: 99907040324
effective search space used: 99907040324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)