Query 002303
Match_columns 939
No_of_seqs 452 out of 2085
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 21:03:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 2E-121 4E-126 1011.9 39.5 736 96-936 46-823 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 7.8E-99 2E-103 922.5 39.7 812 85-936 4-842 (842)
3 COG5533 UBP5 Ubiquitin C-termi 100.0 9.2E-64 2E-68 514.1 23.7 334 336-935 68-414 (415)
4 KOG1865 Ubiquitin carboxyl-ter 100.0 4E-63 8.6E-68 551.6 22.7 305 336-935 105-410 (545)
5 cd02663 Peptidase_C19G A subfa 100.0 4.1E-62 8.9E-67 540.8 26.4 287 341-933 1-300 (300)
6 cd02660 Peptidase_C19D A subfa 100.0 2.4E-59 5.2E-64 525.5 30.8 318 340-933 1-328 (328)
7 cd02671 Peptidase_C19O A subfa 100.0 2.5E-59 5.3E-64 522.4 30.2 299 333-933 18-332 (332)
8 cd02668 Peptidase_C19L A subfa 100.0 2.7E-59 5.9E-64 523.8 29.5 294 341-933 1-324 (324)
9 cd02669 Peptidase_C19M A subfa 100.0 1.7E-58 3.6E-63 535.4 30.6 305 334-933 114-440 (440)
10 cd02667 Peptidase_C19K A subfa 100.0 5.3E-59 1.2E-63 510.5 24.9 252 341-933 1-279 (279)
11 cd02664 Peptidase_C19H A subfa 100.0 2E-58 4.3E-63 516.9 25.6 277 341-933 1-327 (327)
12 KOG1868 Ubiquitin C-terminal h 100.0 7.4E-59 1.6E-63 541.5 17.6 343 334-938 296-649 (653)
13 cd02657 Peptidase_C19A A subfa 100.0 5E-57 1.1E-61 501.6 27.6 287 341-933 1-305 (305)
14 cd02658 Peptidase_C19B A subfa 100.0 1.4E-56 3E-61 499.5 29.9 292 341-933 1-311 (311)
15 cd02661 Peptidase_C19E A subfa 100.0 2.9E-56 6.2E-61 494.5 28.3 302 339-932 1-303 (304)
16 cd02659 peptidase_C19C A subfa 100.0 9.3E-56 2E-60 497.7 28.5 298 338-936 1-333 (334)
17 cd02662 Peptidase_C19F A subfa 100.0 1E-50 2.3E-55 435.0 23.1 122 788-933 96-240 (240)
18 cd02674 Peptidase_C19R A subfa 100.0 2.6E-48 5.6E-53 413.8 20.7 146 788-933 84-230 (230)
19 KOG1873 Ubiquitin-specific pro 100.0 1.8E-49 3.8E-54 448.3 10.4 149 786-935 676-877 (877)
20 cd02673 Peptidase_C19Q A subfa 100.0 1.6E-45 3.5E-50 393.6 20.0 129 789-933 111-245 (245)
21 KOG1867 Ubiquitin-specific pro 100.0 2.8E-45 6.1E-50 421.7 17.2 324 333-936 155-485 (492)
22 cd02665 Peptidase_C19I A subfa 100.0 9.9E-45 2.1E-49 380.4 17.7 126 789-933 94-228 (228)
23 PF00443 UCH: Ubiquitin carbox 100.0 5.4E-44 1.2E-48 386.2 23.0 258 339-932 1-269 (269)
24 cd02666 Peptidase_C19J A subfa 100.0 5.1E-44 1.1E-48 398.6 14.6 159 339-521 1-178 (343)
25 KOG0944 Ubiquitin-specific pro 100.0 4.8E-43 1E-47 393.2 21.3 153 334-520 302-465 (763)
26 KOG1866 Ubiquitin carboxyl-ter 100.0 2.3E-44 4.9E-49 405.3 3.9 304 335-938 91-437 (944)
27 COG5077 Ubiquitin carboxyl-ter 100.0 8.4E-42 1.8E-46 384.4 7.1 297 335-937 189-513 (1089)
28 cd02257 Peptidase_C19 Peptidas 100.0 1E-39 2.2E-44 348.0 22.2 142 788-933 99-255 (255)
29 cd02672 Peptidase_C19P A subfa 100.0 5E-40 1.1E-44 355.8 14.9 135 788-933 117-268 (268)
30 KOG4598 Putative ubiquitin-spe 100.0 4.4E-40 9.5E-45 366.1 2.1 148 789-937 215-443 (1203)
31 COG5207 UBP14 Isopeptidase T [ 100.0 7E-37 1.5E-41 332.2 17.5 141 339-512 303-448 (749)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 2.4E-35 5.3E-40 370.9 12.8 299 336-937 166-487 (1093)
33 cd02670 Peptidase_C19N A subfa 100.0 1.6E-34 3.5E-39 305.7 16.3 123 787-933 79-241 (241)
34 KOG1864 Ubiquitin-specific pro 100.0 2.2E-33 4.9E-38 327.8 14.8 330 336-935 229-572 (587)
35 KOG1872 Ubiquitin-specific pro 100.0 4.5E-32 9.8E-37 297.5 10.5 243 209-518 13-264 (473)
36 PF13423 UCH_1: Ubiquitin carb 100.0 6.5E-30 1.4E-34 282.7 23.7 284 340-914 1-295 (295)
37 KOG1871 Ubiquitin-specific pro 100.0 5.6E-29 1.2E-33 266.3 12.2 122 814-936 287-420 (420)
38 KOG2026 Spindle pole body prot 99.9 5.9E-27 1.3E-31 249.4 14.8 304 332-935 127-441 (442)
39 PF06337 DUSP: DUSP domain; I 99.7 5.6E-18 1.2E-22 156.3 7.0 79 96-180 3-93 (99)
40 smart00695 DUSP Domain in ubiq 99.7 1.9E-16 4E-21 142.2 9.0 77 90-180 2-79 (86)
41 PF14836 Ubiquitin_3: Ubiquiti 99.5 5.2E-14 1.1E-18 123.4 8.4 83 200-283 2-88 (88)
42 KOG1275 PAB-dependent poly(A) 99.5 2.8E-13 6.2E-18 158.0 13.2 123 809-932 702-860 (1118)
43 PF14533 USP7_C2: Ubiquitin-sp 98.1 2.5E-05 5.4E-10 82.3 11.6 144 510-665 2-157 (213)
44 KOG1864 Ubiquitin-specific pro 96.8 0.0018 3.9E-08 77.5 6.8 104 342-446 34-152 (587)
45 cd01796 DDI1_N DNA damage indu 96.7 0.0057 1.2E-07 52.7 6.9 62 207-273 8-69 (71)
46 PTZ00044 ubiquitin; Provisiona 96.4 0.013 2.8E-07 51.0 7.9 65 206-276 8-72 (76)
47 cd01807 GDX_N ubiquitin-like d 96.4 0.013 2.7E-07 50.9 7.5 65 206-276 8-72 (74)
48 cd01812 BAG1_N Ubiquitin-like 96.2 0.014 3.1E-07 49.9 6.7 61 208-274 9-69 (71)
49 PF15499 Peptidase_C98: Ubiqui 96.1 0.0043 9.3E-08 65.2 3.6 81 810-913 172-252 (275)
50 cd01813 UBP_N UBP ubiquitin pr 96.1 0.018 3.9E-07 50.1 6.7 65 207-274 8-72 (74)
51 cd01810 ISG15_repeat2 ISG15 ub 96.1 0.028 6.1E-07 48.8 7.8 66 205-276 5-70 (74)
52 cd01795 USP48_C USP ubiquitin- 96.0 0.015 3.4E-07 52.2 5.9 62 210-276 16-77 (107)
53 cd01806 Nedd8 Nebb8-like ubiq 96.0 0.034 7.4E-07 48.1 8.2 65 206-276 8-72 (76)
54 cd01794 DC_UbP_C dendritic cel 96.0 0.027 5.9E-07 48.4 7.3 63 206-274 6-68 (70)
55 PF14560 Ubiquitin_2: Ubiquiti 96.0 0.043 9.3E-07 49.2 8.9 66 209-274 14-81 (87)
56 PF00240 ubiquitin: Ubiquitin 95.9 0.039 8.4E-07 46.9 7.8 64 207-276 4-67 (69)
57 cd01803 Ubiquitin Ubiquitin. U 95.8 0.043 9.3E-07 47.5 7.7 66 206-277 8-73 (76)
58 cd01798 parkin_N amino-termina 95.6 0.045 9.9E-07 46.8 7.3 63 206-274 6-68 (70)
59 cd01799 Hoil1_N Ubiquitin-like 95.6 0.037 8.1E-07 48.2 6.7 61 208-274 12-73 (75)
60 cd01800 SF3a120_C Ubiquitin-li 95.6 0.043 9.3E-07 47.9 6.9 64 208-277 7-70 (76)
61 cd01805 RAD23_N Ubiquitin-like 95.6 0.062 1.3E-06 46.8 8.0 64 207-276 9-74 (77)
62 cd01793 Fubi Fubi ubiquitin-li 95.5 0.044 9.6E-07 47.5 6.9 62 209-276 9-70 (74)
63 cd01802 AN1_N ubiquitin-like d 95.5 0.085 1.8E-06 49.0 9.0 66 206-277 35-100 (103)
64 cd01792 ISG15_repeat1 ISG15 ub 95.4 0.067 1.4E-06 47.2 7.7 67 206-276 10-76 (80)
65 cd01797 NIRF_N amino-terminal 95.3 0.07 1.5E-06 46.9 7.5 62 211-278 14-76 (78)
66 cd01809 Scythe_N Ubiquitin-lik 95.3 0.078 1.7E-06 45.4 7.5 63 206-274 8-70 (72)
67 cd01804 midnolin_N Ubiquitin-l 95.2 0.11 2.4E-06 45.6 8.5 63 207-276 10-72 (78)
68 cd01808 hPLIC_N Ubiquitin-like 94.5 0.15 3.2E-06 43.8 7.2 58 211-274 12-69 (71)
69 cd01791 Ubl5 UBL5 ubiquitin-li 94.4 0.17 3.6E-06 43.9 7.3 62 207-274 10-71 (73)
70 cd01789 Alp11_N Ubiquitin-like 94.4 0.28 6E-06 43.8 8.8 66 209-274 13-79 (84)
71 cd01763 Sumo Small ubiquitin-r 94.3 0.29 6.3E-06 43.9 9.0 65 206-276 19-83 (87)
72 cd01769 UBL Ubiquitin-like dom 93.1 0.36 7.8E-06 40.5 7.1 62 207-274 6-67 (69)
73 smart00213 UBQ Ubiquitin homol 92.4 0.36 7.7E-06 39.9 6.0 54 209-268 10-63 (64)
74 PF00789 UBX: UBX domain; Int 91.9 1 2.2E-05 39.7 8.6 67 205-274 13-81 (82)
75 PF11543 UN_NPL4: Nuclear pore 91.7 0.55 1.2E-05 41.5 6.5 64 209-274 14-78 (80)
76 cd01788 ElonginB Ubiquitin-lik 91.6 0.72 1.6E-05 42.9 7.3 71 206-282 9-87 (119)
77 PF11976 Rad60-SLD: Ubiquitin- 91.0 0.95 2E-05 38.7 7.3 62 205-272 7-69 (72)
78 TIGR00601 rad23 UV excision re 89.7 0.86 1.9E-05 52.2 7.5 65 206-276 8-75 (378)
79 smart00166 UBX Domain present 89.5 1.7 3.8E-05 38.2 7.8 67 205-274 11-79 (80)
80 cd01767 UBX UBX (ubiquitin reg 85.3 5.4 0.00012 34.7 8.3 65 205-274 9-75 (77)
81 cd01771 Faf1_UBX Faf1 UBX doma 85.3 5.3 0.00011 35.3 8.2 70 205-276 11-80 (80)
82 cd01774 Faf1_like2_UBX Faf1 ik 84.7 5.1 0.00011 35.9 7.9 69 205-274 11-83 (85)
83 cd01773 Faf1_like1_UBX Faf1 ik 83.9 7.8 0.00017 34.4 8.6 71 204-276 11-81 (82)
84 cd01772 SAKS1_UBX SAKS1-like U 78.3 11 0.00023 33.2 7.6 66 205-274 11-78 (79)
85 PF05408 Peptidase_C28: Foot-a 78.0 1.2 2.6E-05 44.9 1.6 25 336-360 30-54 (193)
86 KOG4495 RNA polymerase II tran 76.8 4.2 9E-05 36.5 4.4 56 207-266 10-65 (110)
87 PF05408 Peptidase_C28: Foot-a 75.2 3.2 6.9E-05 42.0 3.7 35 885-920 129-165 (193)
88 PLN02560 enoyl-CoA reductase 74.8 9.6 0.00021 42.6 7.9 62 212-274 17-81 (308)
89 cd01815 BMSC_UbP_N Ubiquitin-l 74.4 5.6 0.00012 34.6 4.6 52 217-274 19-73 (75)
90 PF02196 RBD: Raf-like Ras-bin 72.4 28 0.00061 30.0 8.4 65 205-276 7-71 (71)
91 KOG0010 Ubiquitin-like protein 71.7 9.2 0.0002 44.5 6.8 62 209-276 25-86 (493)
92 cd01790 Herp_N Homocysteine-re 71.3 15 0.00032 32.4 6.6 67 198-271 2-74 (79)
93 cd01770 p47_UBX p47-like ubiqu 70.1 26 0.00056 30.8 7.9 61 205-268 11-72 (79)
94 PF11470 TUG-UBL1: GLUT4 regul 70.0 12 0.00027 31.6 5.5 60 206-271 4-63 (65)
95 COG3478 Predicted nucleic-acid 69.3 4.2 9.1E-05 33.8 2.5 36 807-842 3-40 (68)
96 cd00196 UBQ Ubiquitin-like pro 67.6 17 0.00036 28.3 6.0 62 207-274 6-67 (69)
97 cd01801 Tsc13_N Ubiquitin-like 63.7 17 0.00037 31.6 5.5 54 216-273 20-74 (77)
98 cd01760 RBD Ubiquitin-like dom 63.5 29 0.00064 30.0 6.7 66 205-275 6-71 (72)
99 cd01817 RGS12_RBD Ubiquitin do 61.2 45 0.00098 28.9 7.3 65 205-276 6-70 (73)
100 PF14560 Ubiquitin_2: Ubiquiti 59.6 47 0.001 29.5 7.8 64 540-603 14-80 (87)
101 smart00455 RBD Raf-like Ras-bi 58.3 44 0.00096 28.7 6.9 64 205-275 6-69 (70)
102 KOG1870 Ubiquitin C-terminal h 57.1 6.9 0.00015 49.9 2.6 120 787-918 481-600 (842)
103 PF01473 CW_binding_1: Putativ 49.8 13 0.00029 23.2 1.8 15 897-912 2-16 (19)
104 PF08817 YukD: WXG100 protein 49.5 55 0.0012 28.6 6.3 64 208-273 12-78 (79)
105 PF08715 Viral_protease: Papai 47.1 37 0.00081 38.1 6.0 79 336-443 99-178 (320)
106 cd06406 PB1_P67 A PB1 domain i 45.9 63 0.0014 28.6 5.9 37 210-246 12-48 (80)
107 KOG0005 Ubiquitin-like protein 45.7 24 0.00051 29.0 3.0 57 209-271 11-67 (70)
108 cd01768 RA RA (Ras-associating 44.4 1.1E+02 0.0024 26.9 7.6 53 540-592 13-67 (87)
109 KOG1769 Ubiquitin-like protein 43.0 1.3E+02 0.0029 27.6 7.7 70 198-274 21-90 (99)
110 cd01777 SNX27_RA Ubiquitin dom 41.6 50 0.0011 29.6 4.7 43 198-241 2-44 (87)
111 PF14533 USP7_C2: Ubiquitin-sp 40.8 1E+02 0.0022 32.6 7.9 64 209-275 34-100 (213)
112 KOG0004 Ubiquitin/40S ribosoma 39.6 42 0.00092 33.3 4.3 63 210-278 12-74 (156)
113 PF02017 CIDE-N: CIDE-N domain 39.2 77 0.0017 27.9 5.4 58 218-282 20-77 (78)
114 cd01787 GRB7_RA RA (RAS-associ 35.1 1.3E+02 0.0027 27.1 6.2 61 526-590 3-64 (85)
115 cd01814 NTGP5 Ubiquitin-like N 34.8 89 0.0019 29.5 5.4 53 206-264 12-72 (113)
116 KOG3556 Familial cylindromatos 34.2 7.8 0.00017 44.9 -1.8 106 824-933 516-716 (724)
117 cd01779 Myosin_IXb_RA ubitquit 34.0 2E+02 0.0044 26.2 7.2 63 527-589 12-74 (105)
118 cd01615 CIDE_N CIDE_N domain, 33.7 1.1E+02 0.0023 27.0 5.5 59 217-282 19-77 (78)
119 cd06535 CIDE_N_CAD CIDE_N doma 33.4 95 0.0021 27.3 5.0 58 217-282 19-76 (77)
120 PF00788 RA: Ras association ( 33.3 2.1E+02 0.0045 25.1 7.7 34 209-242 17-52 (93)
121 KOG4248 Ubiquitin-like protein 32.6 65 0.0014 41.1 5.4 71 207-284 11-83 (1143)
122 cd01811 OASL_repeat1 2'-5' oli 32.4 1.6E+02 0.0034 25.7 6.0 63 209-273 11-73 (80)
123 smart00314 RA Ras association 31.6 2.8E+02 0.006 24.5 8.2 52 541-592 17-69 (90)
124 PF13881 Rad60-SLD_2: Ubiquiti 31.5 3.3E+02 0.0072 25.6 8.8 67 198-270 3-76 (111)
125 KOG1871 Ubiquitin-specific pro 30.6 24 0.00053 40.0 1.2 35 335-369 174-208 (420)
126 cd01791 Ubl5 UBL5 ubiquitin-li 30.5 2E+02 0.0043 24.8 6.6 67 527-604 3-71 (73)
127 cd01804 midnolin_N Ubiquitin-l 30.4 1.5E+02 0.0033 25.7 6.0 40 526-569 2-41 (78)
128 smart00266 CAD Domains present 30.3 1.4E+02 0.0031 26.0 5.6 32 217-248 17-48 (74)
129 PF13019 Telomere_Sde2: Telome 29.1 2.3E+02 0.005 28.6 7.6 52 527-578 2-53 (162)
130 PF12436 USP7_ICP0_bdg: ICP0-b 28.4 1.2E+02 0.0026 32.9 6.1 49 198-246 177-227 (249)
131 cd01768 RA RA (Ras-associating 27.8 2.1E+02 0.0045 25.2 6.6 40 208-247 12-53 (87)
132 KOG3751 Growth factor receptor 27.5 54 0.0012 38.6 3.3 75 518-596 181-256 (622)
133 PF09379 FERM_N: FERM N-termin 27.2 3.4E+02 0.0073 23.2 7.8 37 206-242 4-41 (80)
134 PF00788 RA: Ras association ( 27.2 3.1E+02 0.0068 24.0 7.8 63 527-589 4-68 (93)
135 PF15499 Peptidase_C98: Ubiqui 25.7 2.3E+02 0.0051 30.7 7.4 28 343-370 6-33 (275)
136 smart00295 B41 Band 4.1 homolo 25.5 4.1E+02 0.0088 27.0 9.4 50 197-247 3-53 (207)
137 smart00666 PB1 PB1 domain. Pho 23.8 2.8E+02 0.006 23.9 6.6 37 207-243 9-45 (81)
138 cd01789 Alp11_N Ubiquitin-like 23.6 2.6E+02 0.0057 24.7 6.4 31 542-572 15-45 (84)
139 PF12436 USP7_ICP0_bdg: ICP0-b 22.8 1E+02 0.0022 33.3 4.4 63 212-275 88-151 (249)
140 PF00770 Peptidase_C5: Adenovi 22.6 1.1E+02 0.0024 31.0 4.0 31 881-911 21-53 (183)
141 KOG1867 Ubiquitin-specific pro 22.2 38 0.00083 40.4 0.9 31 336-366 74-104 (492)
142 cd06539 CIDE_N_A CIDE_N domain 22.1 2.1E+02 0.0045 25.3 5.1 58 218-282 20-77 (78)
143 cd01805 RAD23_N Ubiquitin-like 21.8 3.4E+02 0.0074 23.0 6.7 25 541-565 12-36 (77)
144 PF09855 DUF2082: Nucleic-acid 21.6 74 0.0016 26.9 2.2 34 809-842 1-36 (64)
145 KOG0011 Nucleotide excision re 21.5 1.8E+02 0.0038 32.6 5.7 65 208-278 10-76 (340)
146 PF14205 Cys_rich_KTR: Cystein 21.0 43 0.00092 27.2 0.7 12 807-818 27-38 (55)
147 smart00314 RA Ras association 20.8 3.6E+02 0.0078 23.8 6.8 39 207-245 14-54 (90)
148 cd01796 DDI1_N DNA damage indu 20.3 2.2E+02 0.0048 24.1 5.1 55 542-602 12-68 (71)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-121 Score=1011.89 Aligned_cols=736 Identities=32% Similarity=0.505 Sum_probs=567.0
Q ss_pred EEEEEcchhHHHHHHhhccccCCccCCCCCCCCChhhhhhhhhcccCCCCCCCcCCCCccCCCeEEcCHHHHHHHHHHcC
Q 002303 96 KVYLVPYRWWKESQILLAEKVGGVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLRALKWHN 175 (939)
Q Consensus 96 ~~ylv~~~W~~~w~~~v~~~~~g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~~~~Dy~~Vp~~~W~~l~~wYG 175 (939)
..|++++.|+...-++...++. .||||+--.|+ |-+...++..+.++.||.+|.+.+|+.|++|||
T Consensus 46 ~a~i~~y~wyeg~fd~~~~dg~-----~pgPi~q~~i~---------d~e~e~lk~sl~e~idysiis~~vw~llvrwyG 111 (823)
T COG5560 46 YAVIFAYAWYEGMFDRASCDGG-----SPGPIVQGPIV---------DFEPESLKKSLREGIDYSIISGAVWQLLVRWYG 111 (823)
T ss_pred eEEEEehHHhhhhcccccccCC-----CCCCCCccccc---------ccChhhcchhhhcCCCeeeechHHHHHHHHHhc
Confidence 8999999999998887765442 39999998888 446789999999999999999999999999999
Q ss_pred -CCcce-eeccCC-CCCCcceeeeeeEEEEeeecC---------CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEe
Q 002303 176 -DSKAA-VKDFGS-SFAADEQDVFPLQIRLSVSQE---------TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWD 243 (939)
Q Consensus 176 -g~p~i-vi~~~~-~~~~~~vEvYPl~l~l~~~~~---------~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~ 243 (939)
.|+.+ ++..+. +.....+|+||+.+++....+ .....+.+|...|+.++.+++..+|-+|.+++|||+
T Consensus 112 l~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~ 191 (823)
T COG5560 112 LAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWD 191 (823)
T ss_pred ccccceeeEEeccccccCCccccccceEEEEEEEeccchhhhcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEE
Confidence 34555 332222 334457999999999877543 134678999999999999999999999999999999
Q ss_pred ecCCccccccccccccccccc--cCCCc---------------eEEEEEe-ecCcccCCCCccccccccccccccccCCc
Q 002303 244 FSGQTTQFLMNDRVTMSDDFS--AKPGE---------------EVFLQLQ-VHGFSDSVGETNDEMAEHYKIIDSICNGS 305 (939)
Q Consensus 244 ~~~~~~~~lL~d~~~tL~d~~--l~~~q---------------~IllE~k-~dg~W~~~~~~~~~~~~~~~~~~~~~~~~ 305 (939)
+...+....+-+.+. ..+.. ...++ ..+++.. ..++|+...
T Consensus 192 v~~~~~~~r~~~~s~-f~~~~~~a~~~~~l~~~t~~el~~d~s~lll~kit~np~wlvds-------------------- 250 (823)
T COG5560 192 VVPEIMGLRLGLDSF-FRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPDWLVDS-------------------- 250 (823)
T ss_pred ecCCcccccccCHHH-HhhcchhccchhhhcccHHHHhccchhhhHHhhhccCCccceee--------------------
Confidence 875543322221111 11100 00111 1111111 223332210
Q ss_pred ccccCCCCCCCccccC-CCccccCCCCCCcccccccccccCCCcchHHHHHHHHhCChhHHHHHhh-hcccccccCCCCC
Q 002303 306 VKINGSNDNLNSYITS-SNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLG 383 (939)
Q Consensus 306 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~-~~~~~~~~~~~~~ 383 (939)
... ++... . ...|.|||.|+||||||||+||||.||+.||+||+. .|.+++|..||+|
T Consensus 251 -------------i~~~~n~si-----n--ke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplg 310 (823)
T COG5560 251 -------------IVDDHNRSI-----N--KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLG 310 (823)
T ss_pred -------------ecchhhhhH-----H--hhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccc
Confidence 000 00001 1 124999999999999999999999999999999996 4999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCccchHHHHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCC
Q 002303 384 LNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQ 463 (939)
Q Consensus 384 ~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~ 463 (939)
+.|.+|.+|+.|+++++.++..+++|+.|+..|+.++..|+||.|||+|||++||||+|||+|||+.+|||.+..|....
T Consensus 311 mhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~ 390 (823)
T COG5560 311 MHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPG 390 (823)
T ss_pred hhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875433
Q ss_pred C---hHHHHHHHHHhhhccCCCcccccccEEEEeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCc
Q 002303 464 P---EEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPA 540 (939)
Q Consensus 464 ~---~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~ 540 (939)
. ....|+++|..|.+||+|+|+|+|+|.++||++|+.|+.+|++||||++|+||||.+..|..+|++||++|...|
T Consensus 391 d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p- 469 (823)
T COG5560 391 DDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP- 469 (823)
T ss_pred chHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc-
Confidence 3 356899999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred ceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCccc-cccccCCCcEEEEEcCCCCCCCceEEEe
Q 002303 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDL-LGLIRDEDKLVAYRLPKDSETPSLVLFM 619 (939)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~-~~~i~~~d~i~~yel~~~~~~~~~~~~~ 619 (939)
..+++.+.+++.+|++.+....|+..-..+.++++|..++++.++..... +..|.+.|.+|.|+ ..++...++++
T Consensus 470 -l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvv 545 (823)
T COG5560 470 -LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVV 545 (823)
T ss_pred -eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEE
Confidence 67888899999999999988888776678999999999999999977764 47899999999999 44455789999
Q ss_pred eecccccccccccccceeeeccce-EEec-cCCCChhHHHHHHHHhcCCcc-CCCCCCCCcccccC--CCCCCCCccccc
Q 002303 620 HERKEESCHLGRLSLEWKIFGTPL-VGRL-SDLTNGSDIRKLFLKLLDPFL-MPVGDDSDFSDEAG--KIDNGDSIVEDV 694 (939)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~fg~P~-~~~~-~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~ 694 (939)
|.+.++. ..+..+||.|+ ...+ ..+.-.++|.+...+.+.... .+++.+.++.+... ......+..+
T Consensus 546 h~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~-- 617 (823)
T COG5560 546 HLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLK-- 617 (823)
T ss_pred ecccccc------ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhh--
Confidence 9977764 45678999995 3344 333334444333333322111 11221111111000 0000000000
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhh
Q 002303 695 TSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEV 774 (939)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~ 774 (939)
+..+......+..+.+...+....+.|.|+|.+......+.. ..+.-.
T Consensus 618 ------------------------------l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy--~~lw~~ 665 (823)
T COG5560 618 ------------------------------LETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSY--DPLWTI 665 (823)
T ss_pred ------------------------------hhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcC--Cccchh
Confidence 000000000001111112233456788999999876532210 000000
Q ss_pred cccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceee
Q 002303 775 CKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYV 854 (939)
Q Consensus 775 ~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V 854 (939)
-+.+. ..+.+||+|||++|.++|+|+..|.||||.||++++|+|+|+||++|.|||||||||++.|.+++||++.|
T Consensus 666 ~ei~~----~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlV 741 (823)
T COG5560 666 REIGA----AERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLV 741 (823)
T ss_pred HHhhh----ccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhh
Confidence 00111 13689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcccccCCCCCceEEEEEEEEeeccCCCCeEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEE
Q 002303 855 DFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 933 (939)
Q Consensus 855 ~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~ 933 (939)
+|||.+|||+.|+....+ ....|+||||.||||++||||||||+|+ .+++||+|||++|++|.+++.++++||||||+
T Consensus 742 eyPiddldLs~~~~~~~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyr 820 (823)
T COG5560 742 EYPIDDLDLSGVEYMVDD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYR 820 (823)
T ss_pred ccccccccccceEEeecC-cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEE
Confidence 999999999999887755 4599999999999999999999999999 77899999999999999999999999999999
Q ss_pred Eec
Q 002303 934 RVS 936 (939)
Q Consensus 934 R~~ 936 (939)
|+.
T Consensus 821 rk~ 823 (823)
T COG5560 821 RKS 823 (823)
T ss_pred ecC
Confidence 974
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-99 Score=922.46 Aligned_cols=812 Identities=34% Similarity=0.503 Sum_probs=638.6
Q ss_pred cCCCCCCCCccEEEEEcchhHHHHHHhhccccC----CccCC--CCCCCCChhhhhhhhhcccCCCCCCCcCCCCccCCC
Q 002303 85 SRGLFDDDDRQKVYLVPYRWWKESQILLAEKVG----GVLYE--VLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVRE 158 (939)
Q Consensus 85 ~~~~~~~~~~~~~ylv~~~W~~~w~~~v~~~~~----g~~~~--~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~~~~D 158 (939)
.++....++ .+++|..+|+.+|++||+.... +.... .++++||...+ + ++.....+|..++++.|
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~~~n~~~~------~-~~~~~~~~~~~~~e~~~ 74 (842)
T KOG1870|consen 4 SRRTCKSGK--SHGLILWRCLEQWQSYVGLESYHEISTIHSQAPKHGLTDNLTFL------R-CDACDKTLRVSLLEGLD 74 (842)
T ss_pred ccccccccc--ccchhhhhhhhhccccccceeeeccccccccccccccccCccch------h-HhhhhhHHHhhhccccc
Confidence 456678889 9999999999999999998322 11111 28899999999 4 33333399999999999
Q ss_pred eEEcCHHHHHHHHHHc-CCCcce---eeccCCCCCCcceeeeeeEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCC
Q 002303 159 YALVPEGMWLRALKWH-NDSKAA---VKDFGSSFAADEQDVFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFIS 234 (939)
Q Consensus 159 y~~Vp~~~W~~l~~wY-Gg~p~i---vi~~~~~~~~~~vEvYPl~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i 234 (939)
|.++|+++|+.+..|| .|++++ |+..+.....+.+|+||+.+.++...+.....+..+...|+.++.+.++..+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 154 (842)
T KOG1870|consen 75 YTISPRSVQKLLVEWFKSGGAAILRAVFDEGEIERDDFVELYPRGLTLLKNSGNSRTSLALQADSTCPPLTSYFLESGGL 154 (842)
T ss_pred cccCCHHHHhhccccccCCCccchhhhhcccccccCCcccccchhhhhccCCCCccceeccccccCccHHHHHHHHhcCC
Confidence 9999999999999999 466777 777777666699999999999988776443348899999999999999999999
Q ss_pred CccceEEEeecCCcccccccccc-ccccccccCCCceEEEEEe-ecCcccCCCCccccccccccccccccCCcccccCCC
Q 002303 235 VSEMLYIWDFSGQTTQFLMNDRV-TMSDDFSAKPGEEVFLQLQ-VHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSN 312 (939)
Q Consensus 235 ~~e~~RLW~~~~~~~~~lL~d~~-~tL~d~~l~~~q~IllE~k-~dg~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (939)
+.+..+||..+......++.... .++..+.+..++.+++|+. .+++|+++.+....+..+.. ....+++....+.
T Consensus 155 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~-- 231 (842)
T KOG1870|consen 155 PRTKFAIWASYNEKYLSLWYKSDPGKLVPTVLFQGRKMVLEVFRKFASQPSDMTLRCWMDWLSE-RDPDASGTKETRV-- 231 (842)
T ss_pred CcccchhhhhhhHhhhcccccccccccccccccccceEEeeeccccccchhhhchhhccccccc-cccccCCCccccc--
Confidence 99999999998877666665544 6788889999999999999 68999986332111111100 0001111111110
Q ss_pred CCCCccccCCCccccCCCCCCcccccccccccCCCcchHHHHHHHHhCChhHHHHHhhh-cccccccCCCCCCchHHHHH
Q 002303 313 DNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALA 391 (939)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~-~~~~~~~~~~~~~~~~l~~~ 391 (939)
.+ ..........+|.+||.|+||||||||++|||.+.+++++||+.. +..++|..+++++.+.++.+
T Consensus 232 ---------~~---~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~ 299 (842)
T KOG1870|consen 232 ---------DF---PSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASS 299 (842)
T ss_pred ---------cc---ccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechh
Confidence 00 000113455789999999999999999999999999999999965 55569999999999999999
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHH
Q 002303 392 FGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEE 471 (939)
Q Consensus 392 l~~L~~~l~~~~~~~i~P~~f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e 471 (939)
+..++.++|++....++|..++..++.++++|.|+.|||+|||+.||||+||+++++...+||++.+|++++++.+++.+
T Consensus 300 ~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~ 379 (842)
T KOG1870|consen 300 FADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAE 379 (842)
T ss_pred hhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHH
Confidence 99999999999887899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCcccccccEEEEeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcc
Q 002303 472 YWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGR 551 (939)
Q Consensus 472 ~w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~ 551 (939)
.|..|..+++|+|+++|.|+++++++|+.|++++++||||.+|+||+|....+.+++++++.++...|..+.+.++++++
T Consensus 380 ~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 459 (842)
T KOG1870|consen 380 VWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGR 459 (842)
T ss_pred HHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCC-CCceEEE-eeeccccc-cc
Q 002303 552 FQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSE-TPSLVLF-MHERKEES-CH 628 (939)
Q Consensus 552 ~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~-~~~~~~~-~~~~~~~~-~~ 628 (939)
+++|.++|.+.+++. .+.|..++++.+++++++......+..|...+.+++|+++.... ...++.+ .+.+.+.. ..
T Consensus 460 ~~~l~~~l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 538 (842)
T KOG1870|consen 460 IRDLLEYLSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSK 538 (842)
T ss_pred HHHHHHHHHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeecccccccc
Confidence 999999999999999 89999999999999999997777888999999999999985222 2223222 23332221 22
Q ss_pred ccccccceeeeccceEEec-c-CCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCcccccc--ccccCCCCC
Q 002303 629 LGRLSLEWKIFGTPLVGRL-S-DLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVT--SSRVSDNDA 704 (939)
Q Consensus 629 ~~~~~~~~~~fg~P~~~~~-~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 704 (939)
....+...++||.|+++.+ . ...+..++...+..+.+++......... .+.....+.... ...+....
T Consensus 539 ~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~-------~~~~~~~~~~~~e~~~~s~~~~- 610 (842)
T KOG1870|consen 539 GIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVG-------YGVDDQSLKEVSEQSAESSSSV- 610 (842)
T ss_pred CcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccc-------cCCCcccccccccccccccccc-
Confidence 3344567889999999999 4 5678899999999888888632110000 000000000000 00000000
Q ss_pred CCCCCCCCCCCCCCCceeEEEecC-CCCcccccCC----CCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhccccc
Q 002303 705 VSDSSEAGDEPHLSDDFQFYRLDS-IRPTEIKMNE----PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQL 779 (939)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 779 (939)
..++.+ ++.. .....+..... .....+.... .+.. .....+.++++|.+....+|........++..+.+.
T Consensus 611 ~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~ 686 (842)
T KOG1870|consen 611 SRDPSE-DDNS--DQDLSLECLSEESALRFFQSLESRNKSDSE-FEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGA 686 (842)
T ss_pred cCCChh-Hhcc--ccccchhhccCccccccccccccccccccc-ccCCCceeecccChhhcccccccccccccccccccc
Confidence 000000 0000 00000000000 0000011110 1111 111223389999999988776655555555554443
Q ss_pred ccCCC-CCCcCHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCC
Q 002303 780 FTRMP-PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPI 858 (939)
Q Consensus 780 ~~~~~-~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi 858 (939)
...+. ...++|++||+.|+++|.|+.+++||||+|++|++|+|+++||+||+|||||||||+|.++++.|+++.|+||+
T Consensus 687 ~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi 766 (842)
T KOG1870|consen 687 SRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPL 766 (842)
T ss_pred ccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCC
Confidence 33332 26899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCceEEEEEEEEeeccCCCCeEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEEEec
Q 002303 859 DDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 936 (939)
Q Consensus 859 ~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~~ 936 (939)
..||+++|+.+++. .+|+||||+||||+|++||||||+|+ .+++||+|||++|+++++++|++++||+|||||++
T Consensus 767 ~~ld~s~~~~~~~~---~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 767 GSLDLSEFVVNKEQ---VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred cCCCcchhhccCcc---ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 99999999998764 99999999999999999999999999 79999999999999999999999999999999985
No 3
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-64 Score=514.06 Aligned_cols=334 Identities=34% Similarity=0.530 Sum_probs=277.0
Q ss_pred cccccccccCCCcchHHHHHHHHhCChhHHHHHhh-hcccccccCCCCCCch-HHHHHHHHHHHHhcCCCCCccchHHHH
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNG-ELALAFGDLLRKLWAPGGIPVAPRMFK 413 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~-~~~~~~~~~~~~~~~~-~l~~~l~~L~~~l~~~~~~~i~P~~f~ 413 (939)
...+.||.|+|||||||++||||+++..|...|+. -|.+-+|.++|.|..| ..+..|..|...|...+..+|+|+.|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 34689999999999999999999999999997774 4889999999999999 456667777888877777889999999
Q ss_pred HHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhcc-CCCCccccCCCCC-----ChHHHHHHHHHhhhccCCCccccc
Q 002303 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVK-CKPYLEAKDAEGQ-----PEEEVAEEYWRNHRARNDSIIVDL 487 (939)
Q Consensus 414 ~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~-~k~~~e~~d~~~~-----~~~~~a~e~w~~~~~~~~SiI~~l 487 (939)
..++..++.|++.+|||||||+.++||.||||+|.-. ++|..+.+|...+ |......-.|+.|...+.|+|.++
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~ 227 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKT 227 (415)
T ss_pred HHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHH
Confidence 9999999999999999999999999999999998643 4455555542211 111122247999999999999999
Q ss_pred ccEEEEeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCC
Q 002303 488 CQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN 567 (939)
Q Consensus 488 F~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~ 567 (939)
|.|+++++++|..|++.|+++.+|..|.+|+|..
T Consensus 228 f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v---------------------------------------------- 261 (415)
T COG5533 228 FFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEV---------------------------------------------- 261 (415)
T ss_pred HhhhhhhhhhhhhcCCceeEEeccceeeeccchh----------------------------------------------
Confidence 9999999999999999999999999999987631
Q ss_pred ccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEec
Q 002303 568 HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL 647 (939)
Q Consensus 568 ~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 647 (939)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEec
Q 002303 648 SDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLD 727 (939)
Q Consensus 648 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (939)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCC
Q 002303 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPED 807 (939)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d 807 (939)
..+.|+|||++|+++|.|+++|
T Consensus 262 ----------------------------------------------------------~~~~l~eC~~~f~~~e~L~g~d 283 (415)
T COG5533 262 ----------------------------------------------------------VQLGLQECIDRFYEEEKLEGKD 283 (415)
T ss_pred ----------------------------------------------------------eeecHHHHHHHhhhHHhhcCcc
Confidence 0135899999999999999999
Q ss_pred CCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceee----ecCCCCCCCCCcccccCCCCCceEEEEEE
Q 002303 808 MWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYV----DFPIDDLDLSNYVCCKNSQLSNRYVLYAI 883 (939)
Q Consensus 808 ~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V----~FPi~~LDls~~v~~~~~~~~~~YdL~AV 883 (939)
+|.||+|++++.++|++.|.++|++|||||+||.-.-..+.|||+.- +||.+-++--.| -+..+-.+..|.|+||
T Consensus 284 ~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f-~~~~~~~P~~Y~L~gv 362 (415)
T COG5533 284 AWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLF-NNGIGYIPRKYSLLGV 362 (415)
T ss_pred cccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccc-cCCCCCCccceeEEEE
Confidence 99999999999999999999999999999999996555566666542 344322221111 1111125689999999
Q ss_pred EEeeccCCCCeEEEEEEeCCCCEEEEcCCcceecCc-cccCCCceEEEEEEEe
Q 002303 884 SNHYGGMGGGHYTAFVDLGHKRWFEFDDDRVYPVSE-DNIKTSAAYVLFYKRV 935 (939)
Q Consensus 884 inH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs~-~~v~s~~AYvLFY~R~ 935 (939)
+||+|++.||||+++|+. ++.|+.|||+.|++++- -+....+||||||+|.
T Consensus 363 ~Ch~G~L~gGHY~s~v~~-~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 363 VCHNGTLNGGHYFSEVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred EeecceecCceeEEeeee-cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 999999999999999997 68999999999999975 3445679999999995
No 4
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-63 Score=551.57 Aligned_cols=305 Identities=34% Similarity=0.579 Sum_probs=270.5
Q ss_pred cccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~ 415 (939)
..-.+||.|+|||||+|||||||.++|||++||+...+..-+. ....++.++|+..+.......+.+++|..|+..
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~----~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~ 180 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH----RAKFCMLCTFQAHITRALHNPGHPISPSQILSN 180 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc----ccCeeeehHHHHHHHHHhcCCCCccChHHHHHh
Confidence 4567999999999999999999999999999999764433222 234678899999888877777779999999999
Q ss_pred HhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeE
Q 002303 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (939)
Q Consensus 416 l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (939)
|+.+...|..+.|.||||||++++|.|+.-.-... ... .+.....++|.++|+|.++++
T Consensus 181 L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~-----~~~----------------~~~sq~ttlv~~iFGG~LrS~ 239 (545)
T KOG1865|consen 181 LRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGH-----KQV----------------DPRSQDTTLVHQIFGGYLRSQ 239 (545)
T ss_pred hhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCC-----ccC----------------Ccccccceehhhhhccchhhc
Confidence 99999999999999999999999999996542100 000 123445688999999999999
Q ss_pred EecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeE
Q 002303 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (939)
Q Consensus 496 i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e 575 (939)
++|..|+++|.++|+.++|+|.|-.
T Consensus 240 vkC~~C~~vS~tyE~~~dltvei~d------------------------------------------------------- 264 (545)
T KOG1865|consen 240 IKCLHCKGVSDTYEPYLDLTLEIQD------------------------------------------------------- 264 (545)
T ss_pred eecccCCCcccccccccceEEEecc-------------------------------------------------------
Confidence 9999999999999999999987520
Q ss_pred eecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhH
Q 002303 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (939)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 655 (939)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002303 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (939)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (939)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcccc
Q 002303 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (939)
Q Consensus 736 ~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck 815 (939)
.-+|++||+.|++.|.|+|+|+|.|.+||
T Consensus 265 ---------------------------------------------------~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck 293 (545)
T KOG1865|consen 265 ---------------------------------------------------ASSLQQALEQFTKPEKLDGENAYHCGRCK 293 (545)
T ss_pred ---------------------------------------------------chhHHHHHHHhhhHHhhCCccccccchhh
Confidence 12799999999999999999999999999
Q ss_pred CcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeec-cCCCCe
Q 002303 816 KHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGGGH 894 (939)
Q Consensus 816 ~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~gGH 894 (939)
+++.|.|++.|.++|.||+||||||+. .+..||.+.|.|| |.|||.||+..+++ .+.+|.||||++|.| ....||
T Consensus 294 ~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fP-E~LDl~PyMS~~~e-~s~~Y~LYavlVH~g~~~~~GH 369 (545)
T KOG1865|consen 294 QKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFP-ETLDLQPYMSQPNE-GSTVYKLYAVLVHLGTSCHSGH 369 (545)
T ss_pred hhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCc-ccccccccccCCCC-CCceEEEEEEEEeccccccCCc
Confidence 999999999999999999999999998 5679999999999 89999999996665 889999999999999 899999
Q ss_pred EEEEEEeCCCCEEEEcCCcceecCccccCCCceEEEEEEEe
Q 002303 895 YTAFVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRV 935 (939)
Q Consensus 895 YtAy~k~~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~ 935 (939)
|++|||...|+||.|||+.|+.++.+.|++..||||||.|.
T Consensus 370 Y~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 370 YFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred eEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence 99999998899999999999999999999999999999996
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.1e-62 Score=540.78 Aligned_cols=287 Identities=30% Similarity=0.516 Sum_probs=251.0
Q ss_pred ccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCC--CCccchHHHHHHHhh
Q 002303 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--GIPVAPRMFKLKLAN 418 (939)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~~f~~~l~~ 418 (939)
||.|+||||||||+||||+| .+++.+|+.||..||.+. ..+++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 89999999999999999987 357889999999999864 346999999999999
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeEEec
Q 002303 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (939)
Q Consensus 419 ~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C 498 (939)
..|.|.+++||||||||.+|||.||++++...+++..+ ....+........++|.++|+|++.++++|
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C 123 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN------------RKLNNNNNAEPQPTWVHEIFQGILTNETRC 123 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhccccc------------ccccccccCCcCCCChhhhCceEEEeeEEe
Confidence 99999999999999999999999999998765433211 011122333456788999999999999999
Q ss_pred CCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeec
Q 002303 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (939)
Q Consensus 499 ~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~ 578 (939)
..|++++.++|+|++|+|+||..
T Consensus 124 ~~C~~~s~~~e~f~~Lsl~i~~~--------------------------------------------------------- 146 (300)
T cd02663 124 LTCETVSSRDETFLDLSIDVEQN--------------------------------------------------------- 146 (300)
T ss_pred CCCCCCccccceeEEeccCCCCc---------------------------------------------------------
Confidence 99999999999999999988621
Q ss_pred ceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhHHHH
Q 002303 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (939)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 658 (939)
T Consensus 147 -------------------------------------------------------------------------------- 146 (300)
T cd02663 147 -------------------------------------------------------------------------------- 146 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCC
Q 002303 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (939)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (939)
T Consensus 147 -------------------------------------------------------------------------------- 146 (300)
T cd02663 147 -------------------------------------------------------------------------------- 146 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccccCcc
Q 002303 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (939)
Q Consensus 739 ~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~ 818 (939)
.+|++||+.|+++|.|.+++.|+|++|++++
T Consensus 147 -------------------------------------------------~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~ 177 (300)
T cd02663 147 -------------------------------------------------TSITSCLRQFSATETLCGRNKFYCDECCSLQ 177 (300)
T ss_pred -------------------------------------------------CCHHHHHHHhhcccccCCCCcEECCCCCCce
Confidence 2689999999999999999999999999999
Q ss_pred eeEEEEEeeeCCCeEEEEEeeeEeccc--cccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeec-cCCCCeE
Q 002303 819 QASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGGGHY 895 (939)
Q Consensus 819 ~AtKk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~gGHY 895 (939)
.|+|++.|+++|+|||||||||.|+.. ...|+.+.|.||+ .|||.++...... ....|+|+|||+|.| ++++|||
T Consensus 178 ~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GHY 255 (300)
T cd02663 178 EAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL-ELRLFNTTDDAEN-PDRLYELVAVVVHIGGGPNHGHY 255 (300)
T ss_pred eEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCc-EEeccccccccCC-CCeEEEEEEEEEEecCCCCCCce
Confidence 999999999999999999999999864 3689999999995 8999887543332 567999999999999 5999999
Q ss_pred EEEEEeCCCCEEEEcCCcceecCccccC--------CCceEEEEEE
Q 002303 896 TAFVDLGHKRWFEFDDDRVYPVSEDNIK--------TSAAYVLFYK 933 (939)
Q Consensus 896 tAy~k~~~~~Wy~fnDs~Vs~vs~~~v~--------s~~AYvLFY~ 933 (939)
|||+|. +++||+|||+.|+++++++|. +.+||||||+
T Consensus 256 ~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 256 VSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 999998 899999999999999998885 6889999996
No 6
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-59 Score=525.48 Aligned_cols=318 Identities=33% Similarity=0.596 Sum_probs=265.9
Q ss_pred cccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhc-CCCCCccchHHHHHHHhh
Q 002303 340 TGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLW-APGGIPVAPRMFKLKLAN 418 (939)
Q Consensus 340 ~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~i~P~~f~~~l~~ 418 (939)
+||.|+||||||||+||||+|+|+|+++++...+... . .......+++++|+.|+..|+ .+...+++|..|+.++..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~-~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCT-C-LSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccc-c-ccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 5999999999999999999999999999986422210 0 011224579999999999994 445678999999999999
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeEEec
Q 002303 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (939)
Q Consensus 419 ~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C 498 (939)
..+.|.++.|||||||+.+|||.||+++......+ .......++|.++|+|++.++++|
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---------------------~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhcccccc---------------------cccccCCceeEEecccEEEeeeEc
Confidence 99999999999999999999999999987543211 011234578999999999999999
Q ss_pred CCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeec
Q 002303 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (939)
Q Consensus 499 ~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~ 578 (939)
..|++.+.++|+|+.|+|+||.......
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~---------------------------------------------------- 165 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW---------------------------------------------------- 165 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc----------------------------------------------------
Confidence 9999999999999999999986421000
Q ss_pred ceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhHHHH
Q 002303 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (939)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 658 (939)
+.
T Consensus 166 ---------~~--------------------------------------------------------------------- 167 (328)
T cd02660 166 ---------AL--------------------------------------------------------------------- 167 (328)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCC
Q 002303 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (939)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (939)
. .
T Consensus 168 ------------~---------------------------------~--------------------------------- 169 (328)
T cd02660 168 ------------G---------------------------------E--------------------------------- 169 (328)
T ss_pred ------------c---------------------------------c---------------------------------
Confidence 0 0
Q ss_pred CCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccccCcc
Q 002303 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (939)
Q Consensus 739 ~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~ 818 (939)
......++|++||+.|+++|.+++.+ |+|++|++++
T Consensus 170 -------------------------------------------~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~ 205 (328)
T cd02660 170 -------------------------------------------SGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQ 205 (328)
T ss_pred -------------------------------------------cCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCcc
Confidence 00002469999999999999998887 9999999999
Q ss_pred eeEEEEEeeeCCCeEEEEEeeeEecc-ccccccceeeecCCCCCCCCCcccc--------cCCCCCceEEEEEEEEeecc
Q 002303 819 QASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLSNYVCC--------KNSQLSNRYVLYAISNHYGG 889 (939)
Q Consensus 819 ~AtKk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~v~~--------~~~~~~~~YdL~AVinH~G~ 889 (939)
.|.|++.|.++|+||+||||||.|+. +...|+.+.|.||. .|||++|+.. ........|+|+|||+|.|+
T Consensus 206 ~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~ 284 (328)
T cd02660 206 EATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPL-ELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT 284 (328)
T ss_pred ceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCC-EechhhhcccccccccccccCCCCceEEEEEEEEeecc
Confidence 99999999999999999999999987 55689999999994 8999999985 22336789999999999999
Q ss_pred CCCCeEEEEEEeCCCCEEEEcCCcceecCccccCCCceEEEEEE
Q 002303 890 MGGGHYTAFVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 933 (939)
Q Consensus 890 l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~ 933 (939)
.++||||||+|..+++||.|||+.|+++++++|...+||||||.
T Consensus 285 ~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 285 LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred CCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 99999999999866999999999999999999999999999993
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-59 Score=522.40 Aligned_cols=299 Identities=29% Similarity=0.435 Sum_probs=243.1
Q ss_pred CcccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHH
Q 002303 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMF 412 (939)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f 412 (939)
+....|++||.|+||||||||+||||+|+|+|++++.... +.......+ ..+..++..++......++|..|
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~-------~~~~~~~~~-q~~~~~l~~~~~~~~~~~~P~~~ 89 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV-------SLISSVEQL-QSSFLLNPEKYNDELANQAPRRL 89 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh-------cccCcHHHH-HHHHHHHHHHHhhcccccCHHHH
Confidence 3456899999999999999999999999999999886432 111111112 22233445556555556789999
Q ss_pred HHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEE
Q 002303 413 KLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQY 492 (939)
Q Consensus 413 ~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~ 492 (939)
+.++++.+|.|.++.||||||||.+|||.||+ +|.++|+|++
T Consensus 90 ~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------------------------~i~~~F~g~~ 131 (332)
T cd02671 90 LNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------------------------LVEKDFQGQL 131 (332)
T ss_pred HHHHHHhccccCCccccCHHHHHHHHHHHHHH--------------------------------------HHHhhhceEE
Confidence 99999999999999999999999999999983 3678999999
Q ss_pred EeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 493 RSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 493 ~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
+++++|.+|++.+.++|+|++|+||||....... .
T Consensus 132 ~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~---------------------------------------~------ 166 (332)
T cd02671 132 VLRTRCLECETFTERREDFQDISVPVQESELSKS---------------------------------------E------ 166 (332)
T ss_pred EEEEEeCCCCCeeceecccEEEEEEeCCCccccc---------------------------------------c------
Confidence 9999999999999999999999999986421000 0
Q ss_pred eeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCC
Q 002303 573 VAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTN 652 (939)
Q Consensus 573 ~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 652 (939)
.. +.
T Consensus 167 ---------------~~---------~~---------------------------------------------------- 170 (332)
T cd02671 167 ---------------ES---------SE---------------------------------------------------- 170 (332)
T ss_pred ---------------cc---------cc----------------------------------------------------
Confidence 00 00
Q ss_pred hhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCc
Q 002303 653 GSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPT 732 (939)
Q Consensus 653 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (939)
.+ .
T Consensus 171 --------------------------------------------------~~----~----------------------- 173 (332)
T cd02671 171 --------------------------------------------------IS----P----------------------- 173 (332)
T ss_pred --------------------------------------------------cc----c-----------------------
Confidence 00 0
Q ss_pred ccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCc
Q 002303 733 EIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCP 812 (939)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~ 812 (939)
.| .....+|++||+.|+++|.|.++|.|+|+
T Consensus 174 --------------------------------------~~-----------~~~~~tL~~~L~~f~~~E~l~g~n~y~C~ 204 (332)
T cd02671 174 --------------------------------------DP-----------KTEMKTLKWAISQFASVERIVGEDKYFCE 204 (332)
T ss_pred --------------------------------------cc-----------ccccCCHHHHHHHhCCcceecCCCCeeCC
Confidence 00 00235899999999999999999999999
Q ss_pred cccCcceeEEEEEeeeCCCeEEEEEeeeEecc------ccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEe
Q 002303 813 RCKKHWQASKKLDLWRSPDILVIHLKRFSFSR------YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNH 886 (939)
Q Consensus 813 ~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~------~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH 886 (939)
+|++.+.|+|++.|+++|+||+||||||.++. ....|+++.|.||+ .|||.+|...+ ....|+|+|||+|
T Consensus 205 ~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~---~~~~Y~L~~VI~H 280 (332)
T cd02671 205 NCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPL-KLSLEEWSTKP---KNDVYRLFAVVMH 280 (332)
T ss_pred CCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcc-ccccccccCCC---CCCeEEEEEEEEE
Confidence 99999999999999999999999999999874 24689999999996 89999886543 4589999999999
Q ss_pred ec-cCCCCeEEEEEEeCCCCEEEEcCCcceecCccccC---------CCceEEEEEE
Q 002303 887 YG-GMGGGHYTAFVDLGHKRWFEFDDDRVYPVSEDNIK---------TSAAYVLFYK 933 (939)
Q Consensus 887 ~G-~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs~~~v~---------s~~AYvLFY~ 933 (939)
.| ++++|||+||+| ||+|||+.|++++++++. +.+||||||+
T Consensus 281 ~G~~~~~GHY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 281 SGATISSGHYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred cCCCCCCCeEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 99 699999999998 999999999999876653 4689999995
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.7e-59 Score=523.84 Aligned_cols=294 Identities=28% Similarity=0.457 Sum_probs=252.7
Q ss_pred ccccCCCcchHHHHHHHHhCChhHHHHHhhhccccc-ccC----CCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 002303 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEI-NYE----NPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (939)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~-~~~----~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~ 415 (939)
||.|+||||||||+||||+|+|+|+++++....... ... +.......++.+|+.||..||.+...+++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999985422111 000 001113579999999999999998889999999998
Q ss_pred HhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeE
Q 002303 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (939)
Q Consensus 416 l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (939)
++ |..++|||||||+.+|||.||++++.... ....++|.++|+|++.++
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------------------------CcccchhhhhcceEEEEE
Confidence 84 67789999999999999999998864210 112467999999999999
Q ss_pred EecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeE
Q 002303 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (939)
Q Consensus 496 i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e 575 (939)
++|..|++.+.+.|+|+.|+|+||..
T Consensus 130 ~~C~~C~~~s~~~e~f~~l~l~i~~~------------------------------------------------------ 155 (324)
T cd02668 130 TQCSKCGRESSLPSKFYELELQLKGH------------------------------------------------------ 155 (324)
T ss_pred EEeCCCCCccccccccEEEEEEeccc------------------------------------------------------
Confidence 99999999999999999999987621
Q ss_pred eecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhH
Q 002303 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (939)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 655 (939)
T Consensus 156 -------------------------------------------------------------------------------- 155 (324)
T cd02668 156 -------------------------------------------------------------------------------- 155 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002303 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (939)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (939)
T Consensus 156 -------------------------------------------------------------------------------- 155 (324)
T cd02668 156 -------------------------------------------------------------------------------- 155 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcccc
Q 002303 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (939)
Q Consensus 736 ~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck 815 (939)
.+|++||+.|+.+|.|.+++.|+|++|+
T Consensus 156 ----------------------------------------------------~sl~~~L~~~~~~e~l~g~~~~~C~~C~ 183 (324)
T cd02668 156 ----------------------------------------------------KTLEECIDEFLKEEQLTGDNQYFCESCN 183 (324)
T ss_pred ----------------------------------------------------CCHHHHHHHhhCceecCCCccccCCCCC
Confidence 2689999999999999999999999999
Q ss_pred CcceeEEEEEeeeCCCeEEEEEeeeEecc--ccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeec-cCCC
Q 002303 816 KHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGG 892 (939)
Q Consensus 816 ~~~~AtKk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~g 892 (939)
+.+.|+|+..|.++|+||+||||||.|+. ..+.|+++.|.|| +.|||++|+..... .+..|+|+|||+|.| ++++
T Consensus 184 ~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~-~~~~Y~L~~vI~H~G~~~~~ 261 (324)
T cd02668 184 SKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDE-GSYVYELSGVLIHQGVSAYS 261 (324)
T ss_pred ceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccC-CCcEEEEEEEEEEcCCCCCC
Confidence 99999999999999999999999999974 4578999999999 69999999875443 678999999999999 6899
Q ss_pred CeEEEEEEe-CCCCEEEEcCCcceecCcccc---------------------CCCceEEEEEE
Q 002303 893 GHYTAFVDL-GHKRWFEFDDDRVYPVSEDNI---------------------KTSAAYVLFYK 933 (939)
Q Consensus 893 GHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v---------------------~s~~AYvLFY~ 933 (939)
|||+||+|+ .+++||.|||+.|++++.+.| .+..|||||||
T Consensus 262 GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 262 GHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred EeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 999999998 458999999999999976644 46789999996
No 9
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-58 Score=535.38 Aligned_cols=305 Identities=30% Similarity=0.450 Sum_probs=253.7
Q ss_pred cccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCC--CCccchHH
Q 002303 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--GIPVAPRM 411 (939)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~~ 411 (939)
...+|++||.|+||||||||+||||+|+|+||++|+...... +. .....+++.+|+.++++||++. ..+++|.+
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~-~~---~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~ 189 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYE-NI---KDRKSELVKRLSELIRKIWNPRNFKGHVSPHE 189 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccc-cc---cCCCcHHHHHHHHHHHHHhccccCCCccCHHH
Confidence 456899999999999999999999999999999998642211 00 1234579999999999999875 46899999
Q ss_pred HHHHHhhcC-CccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccE
Q 002303 412 FKLKLANFA-PQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQG 490 (939)
Q Consensus 412 f~~~l~~~~-p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G 490 (939)
|+.+++... +.|.+++||||||||.+|||.||++++... ..+.++|.++|+|
T Consensus 190 fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------------------~~~~~ii~~~F~G 242 (440)
T cd02669 190 LLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------------------KPNSSIIHDCFQG 242 (440)
T ss_pred HHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------------------CCCCCcceeccCc
Confidence 999998865 579999999999999999999999986421 2356899999999
Q ss_pred EEEeEEecCCCC---------------CeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHH
Q 002303 491 QYRSMLVCPVCN---------------KVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDL 555 (939)
Q Consensus 491 ~~~s~i~C~~C~---------------~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl 555 (939)
+++++++|..|. .++.+++||++|||+||.....
T Consensus 243 ~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~------------------------------- 291 (440)
T cd02669 243 KVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLF------------------------------- 291 (440)
T ss_pred eEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccc-------------------------------
Confidence 999999987654 3578899999999999854200
Q ss_pred HHHHhhhhccCCccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccc
Q 002303 556 IDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLE 635 (939)
Q Consensus 556 ~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (939)
.+. .
T Consensus 292 ------------------------------~~~----------~------------------------------------ 295 (440)
T cd02669 292 ------------------------------KDG----------N------------------------------------ 295 (440)
T ss_pred ------------------------------ccc----------c------------------------------------
Confidence 000 0
Q ss_pred eeeeccceEEeccCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCC
Q 002303 636 WKIFGTPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEP 715 (939)
Q Consensus 636 ~~~fg~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (939)
..
T Consensus 296 ---------------------------------------------------------------------~~--------- 297 (440)
T cd02669 296 ---------------------------------------------------------------------EE--------- 297 (440)
T ss_pred ---------------------------------------------------------------------cc---------
Confidence 00
Q ss_pred CCCCceeEEEecCCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHH
Q 002303 716 HLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLE 795 (939)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~ 795 (939)
..+ ..++|++||+
T Consensus 298 -----------------------------------------------------~~l--------------~~~~l~e~L~ 310 (440)
T cd02669 298 -----------------------------------------------------NII--------------PQVPLKQLLK 310 (440)
T ss_pred -----------------------------------------------------ccc--------------CcccHHHHHH
Confidence 000 2358999997
Q ss_pred HhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccC--CC
Q 002303 796 AFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKN--SQ 873 (939)
Q Consensus 796 ~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~--~~ 873 (939)
. |.|+.|+..+.|+|++.|++||+|||||||||.++...+.|+.+.|+||++.|||++|+..+. ..
T Consensus 311 k------------y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~ 378 (440)
T cd02669 311 K------------YDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLN 378 (440)
T ss_pred h------------cCCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccC
Confidence 6 457788888999999999999999999999999988788999999999986799999997432 13
Q ss_pred CCceEEEEEEEEeeccC-CCCeEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEE
Q 002303 874 LSNRYVLYAISNHYGGM-GGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 933 (939)
Q Consensus 874 ~~~~YdL~AVinH~G~l-~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~ 933 (939)
.+.+|+|+|||+|.|++ ++|||+||+|+ .+|+||.|||+.|+++++++|..+.||||||+
T Consensus 379 ~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 379 LSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred CCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 57899999999999987 99999999997 57899999999999999999999999999996
No 10
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.3e-59 Score=510.50 Aligned_cols=252 Identities=38% Similarity=0.683 Sum_probs=229.2
Q ss_pred ccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHHHhhcC
Q 002303 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFA 420 (939)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~l~~~~ 420 (939)
||.|+||||||||+||||+|+|+|++++++ +|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 899999999999999999999999999864 7888999999999
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeEEecCC
Q 002303 421 PQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPV 500 (939)
Q Consensus 421 p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C~~ 500 (939)
|.|.+++||||||||..|||.|+ ++|.++|.|++.++++|..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~--------------------------------------~~i~~~F~G~~~~~i~C~~ 85 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR--------------------------------------TFIDSIFGGELTSTIMCES 85 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH--------------------------------------HhhhhhcceEEEEEEEcCC
Confidence 99999999999999999999998 2478899999999999999
Q ss_pred CCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecce
Q 002303 501 CNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSK 580 (939)
Q Consensus 501 C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~ 580 (939)
|++.+.+.|+|+.|+||+|...
T Consensus 86 C~~~s~~~E~f~~L~Lp~~~~~---------------------------------------------------------- 107 (279)
T cd02667 86 CGTVSLVYEPFLDLSLPRSDEI---------------------------------------------------------- 107 (279)
T ss_pred CCCEeCccccceEEecCCCccc----------------------------------------------------------
Confidence 9999999999999988765210
Q ss_pred eeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhHHHHHH
Q 002303 581 IFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKLF 660 (939)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~~~ 660 (939)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCCCC
Q 002303 661 LKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPL 740 (939)
Q Consensus 661 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (939)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccccCccee
Q 002303 741 SISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQA 820 (939)
Q Consensus 741 ~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~A 820 (939)
...++|++||+.|+++|.|.+++.|.|++|++ |
T Consensus 108 --------------------------------------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a 140 (279)
T cd02667 108 --------------------------------------------KSECSIESCLKQFTEVEILEGNNKFACENCTK---A 140 (279)
T ss_pred --------------------------------------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---e
Confidence 01258999999999999999999999999987 9
Q ss_pred EEEEEeeeCCCeEEEEEeeeEeccc-cccccceeeecCCCCCCCCCcccccC----CCCCceEEEEEEEEeeccCCCCeE
Q 002303 821 SKKLDLWRSPDILVIHLKRFSFSRY-FKSKLDTYVDFPIDDLDLSNYVCCKN----SQLSNRYVLYAISNHYGGMGGGHY 895 (939)
Q Consensus 821 tKk~~i~~lP~iLiIhLKRF~~~~~-~~~Ki~~~V~FPi~~LDls~~v~~~~----~~~~~~YdL~AVinH~G~l~gGHY 895 (939)
+|+..|+++|+||+||||||.++.. ...|+++.|.|| +.|||++|+..+. ......|+|+|||+|.|+..+|||
T Consensus 141 ~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY 219 (279)
T cd02667 141 KKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHY 219 (279)
T ss_pred eeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEe
Confidence 9999999999999999999999854 678999999999 6999999998621 235689999999999998899999
Q ss_pred EEEEEeC----------------------CCCEEEEcCCcceecCccccCCCceEEEEEE
Q 002303 896 TAFVDLG----------------------HKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 933 (939)
Q Consensus 896 tAy~k~~----------------------~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~ 933 (939)
+||+|.. +++||+|||+.|+++++++|.+.+||||||+
T Consensus 220 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 220 VAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred EEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 9999972 6899999999999999999999999999996
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-58 Score=516.93 Aligned_cols=277 Identities=30% Similarity=0.499 Sum_probs=239.5
Q ss_pred ccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHH-HHHHHhhc
Q 002303 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRM-FKLKLANF 419 (939)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~-f~~~l~~~ 419 (939)
||.|+||||||||+||||+++|+||+++++...... .....+..+|+.|+..|..+...++.|.. |+.++.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999986532211 11235778899999888766666777776 666543
Q ss_pred CCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeEEecC
Q 002303 420 APQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCP 499 (939)
Q Consensus 420 ~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C~ 499 (939)
.+.|..++|||||||+.+|||.|+ ++|.++|+|++.++++|.
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~--------------------------------------~~i~~~F~G~~~~~i~C~ 114 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTIRCL 114 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHH--------------------------------------HHHHhhCcEEeEeEEEcC
Confidence 578999999999999999999998 137889999999999999
Q ss_pred CCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecc
Q 002303 500 VCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS 579 (939)
Q Consensus 500 ~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~ 579 (939)
.|++++.+.|+|..|+|+||
T Consensus 115 ~C~~~s~~~e~f~~l~L~i~------------------------------------------------------------ 134 (327)
T cd02664 115 NCNSTSARTERFRDLDLSFP------------------------------------------------------------ 134 (327)
T ss_pred CCCCEecccccceeeecCCC------------------------------------------------------------
Confidence 99999999999999988765
Q ss_pred eeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhHHHHH
Q 002303 580 KIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKL 659 (939)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~~ 659 (939)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCCC
Q 002303 660 FLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEP 739 (939)
Q Consensus 660 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (939)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccccCcce
Q 002303 740 LSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQ 819 (939)
Q Consensus 740 ~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~ 819 (939)
+|++||+.|+++|.|++++.|+|++|++++.
T Consensus 135 -------------------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~ 165 (327)
T cd02664 135 -------------------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQD 165 (327)
T ss_pred -------------------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCccc
Confidence 3568899999999999999999999999999
Q ss_pred eEEEEEeeeCCCeEEEEEeeeEecc--ccccccceeeecCCCCCCCCCccccc------------------CCCCCceEE
Q 002303 820 ASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCK------------------NSQLSNRYV 879 (939)
Q Consensus 820 AtKk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~------------------~~~~~~~Yd 879 (939)
|+|++.|.++|+|||||||||.|+. ..+.||.+.|.|| ..|||.+|+... ....+..|+
T Consensus 166 a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 244 (327)
T cd02664 166 AEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSIN-EVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYR 244 (327)
T ss_pred eeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecC-CEEecCccccccccccccccccccccccccccCCCceEE
Confidence 9999999999999999999999985 3468999999999 589999997421 112467999
Q ss_pred EEEEEEeec-cCCCCeEEEEEEeCC---------------------CCEEEEcCCcceecCccccCC-------CceEEE
Q 002303 880 LYAISNHYG-GMGGGHYTAFVDLGH---------------------KRWFEFDDDRVYPVSEDNIKT-------SAAYVL 930 (939)
Q Consensus 880 L~AVinH~G-~l~gGHYtAy~k~~~---------------------~~Wy~fnDs~Vs~vs~~~v~s-------~~AYvL 930 (939)
|+|||+|.| ++++||||||+|... ++||.|||+.|+++++++|.+ ..||||
T Consensus 245 L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlL 324 (327)
T cd02664 245 LYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYIL 324 (327)
T ss_pred EEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEE
Confidence 999999999 699999999999843 789999999999999999875 899999
Q ss_pred EEE
Q 002303 931 FYK 933 (939)
Q Consensus 931 FY~ 933 (939)
|||
T Consensus 325 fY~ 327 (327)
T cd02664 325 FYE 327 (327)
T ss_pred EeC
Confidence 996
No 12
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-59 Score=541.49 Aligned_cols=343 Identities=44% Similarity=0.714 Sum_probs=293.6
Q ss_pred cccccccccccCCCcchHHHHHHHHhCChhHHHHHhh-hcccccccCCCCCCchHHHHHHHHHHHHhcCC-CCCccchHH
Q 002303 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAFGDLLRKLWAP-GGIPVAPRM 411 (939)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~-~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~-~~~~i~P~~ 411 (939)
....|.+||.|+|||||||++||||+.|+.|+..++. .|.+.++..+..+ ...+..++..++..+|.. ...++.|+.
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFG-AEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCccc-chhHHHHHHHhhhhhccCCCceecCcHH
Confidence 3467999999999999999999999999999977774 5777777444433 456777777777777765 567899999
Q ss_pred HHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCC-Ccccc-----CCCCCChHHHHHHHHHhhhccCCCccc
Q 002303 412 FKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKP-YLEAK-----DAEGQPEEEVAEEYWRNHRARNDSIIV 485 (939)
Q Consensus 412 f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~-~~e~~-----d~~~~~~~~~a~e~w~~~~~~~~SiI~ 485 (939)
|+..+.++.|.|+++.|||||||+.+++|.||++++....++ ..... .....++...+...|..+....++.|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 999999999999999999999999999999999999865421 11111 111224445556678888778888899
Q ss_pred ccccEEEEeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhcc
Q 002303 486 DLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFL 565 (939)
Q Consensus 486 ~lF~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~ 565 (939)
++|.||+++.++|..|++.+.+|++|++|+||||.....
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~----------------------------------------- 493 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA----------------------------------------- 493 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEeccccccc-----------------------------------------
Confidence 999999999999999999999999999999999853200
Q ss_pred CCccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEE
Q 002303 566 RNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVG 645 (939)
Q Consensus 566 ~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~ 645 (939)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEE
Q 002303 646 RLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYR 725 (939)
Q Consensus 646 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (939)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCC
Q 002303 726 LDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGP 805 (939)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~ 805 (939)
...++|++|+..|++.|.|++
T Consensus 494 -----------------------------------------------------------~~~~~L~~C~~~ft~~ekle~ 514 (653)
T KOG1868|consen 494 -----------------------------------------------------------GGKVSLEDCLSLFTKEEKLEG 514 (653)
T ss_pred -----------------------------------------------------------ccccchHhhhccccchhhccc
Confidence 012589999999999999999
Q ss_pred CCCCCCccccCcceeE--EEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEE
Q 002303 806 EDMWYCPRCKKHWQAS--KKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAI 883 (939)
Q Consensus 806 ~d~w~C~~Ck~~~~At--Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AV 883 (939)
+++|.||+|++.+.++ |++.||+||+|||||||||.+++....|..+.|+||+..+|+.+++..+.+ ....|+||||
T Consensus 515 ~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~-~~~~Y~L~aV 593 (653)
T KOG1868|consen 515 DEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGN-NPKSYRLYAV 593 (653)
T ss_pred ccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCC-CccceeeEEE
Confidence 9999999999999886 999999999999999999999988889999999999989999988777665 5566999999
Q ss_pred EEeeccCCCCeEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEEEecCC
Q 002303 884 SNHYGGMGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSDV 938 (939)
Q Consensus 884 inH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~~~~ 938 (939)
+||+|+++||||||||+. ..+.|+.|||+.|+.+++.++.+++||||||+|...+
T Consensus 594 v~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~ 649 (653)
T KOG1868|consen 594 VNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIF 649 (653)
T ss_pred EeccCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCcc
Confidence 999999999999999976 5788999999999999999999999999999998654
No 13
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-57 Score=501.60 Aligned_cols=287 Identities=32% Similarity=0.455 Sum_probs=247.9
Q ss_pred ccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHHHhhcC
Q 002303 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFA 420 (939)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~l~~~~ 420 (939)
||.|+||||||||+||||+++|+|++++++.-... ........+++.+|+.|+..|+.+. .+++|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPAR---RGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccc---cccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence 89999999999999999999999999998542211 0122335689999999999998765 4899999999999999
Q ss_pred CccC------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEe
Q 002303 421 PQFS------GYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRS 494 (939)
Q Consensus 421 p~F~------~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s 494 (939)
|.|. +++|||||||+.+|||.|+++++.. ..+.++|.++|+|++.+
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------------------~~~~~~i~~~F~g~~~~ 128 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------------------GSKGSFIDQLFGIELET 128 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------------------CCCCcHHHHhhceEEEE
Confidence 9994 5699999999999999999987541 12356799999999999
Q ss_pred EEecCCCC-CeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 495 MLVCPVCN-KVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 495 ~i~C~~C~-~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
+++|..|+ +++.++|+|++|+|+||...
T Consensus 129 ~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~--------------------------------------------------- 157 (305)
T cd02657 129 KMKCTESPDEEEVSTESEYKLQCHISITT--------------------------------------------------- 157 (305)
T ss_pred EEEcCCCCCCCccccccceEEEeecCCCc---------------------------------------------------
Confidence 99999999 89999999999999997421
Q ss_pred eEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCCh
Q 002303 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (939)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (939)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcc
Q 002303 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (939)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (939)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcc
Q 002303 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (939)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~ 813 (939)
...+|++||+.++++|.. ..|+.
T Consensus 158 ----------------------------------------------------~~~~l~~~L~~~~~~~~~-----~~~~~ 180 (305)
T cd02657 158 ----------------------------------------------------EVNYLQDGLKKGLEEEIE-----KHSPT 180 (305)
T ss_pred ----------------------------------------------------ccccHHHHHHHhhhhhhh-----hcCcc
Confidence 012688999999987764 57999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEeeeEeccc--cccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeec-cC
Q 002303 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GM 890 (939)
Q Consensus 814 Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l 890 (939)
|+....++|+..|.++|+||+||||||.|+.. ...|+.+.|.|| ..|||++|+. .+.+|+|+|||+|.| ++
T Consensus 181 ~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~~ 254 (305)
T cd02657 181 LGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFP-FELDLYELCT-----PSGYYELVAVITHQGRSA 254 (305)
T ss_pred cCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECC-ceEecccccC-----CCCcEEEEEEEEecCCCC
Confidence 99999999999999999999999999999754 467999999999 5899999987 346899999999999 79
Q ss_pred CCCeEEEEEEeCC-CCEEEEcCCcceecCccccCC-------CceEEEEEE
Q 002303 891 GGGHYTAFVDLGH-KRWFEFDDDRVYPVSEDNIKT-------SAAYVLFYK 933 (939)
Q Consensus 891 ~gGHYtAy~k~~~-~~Wy~fnDs~Vs~vs~~~v~s-------~~AYvLFY~ 933 (939)
.+|||+||+|..+ ++||.|||+.|+++++++|.. .+|||||||
T Consensus 255 ~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 255 DSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred CCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 9999999999843 899999999999999999864 699999996
No 14
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-56 Score=499.46 Aligned_cols=292 Identities=30% Similarity=0.496 Sum_probs=245.1
Q ss_pred ccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCC--------------CCc
Q 002303 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--------------GIP 406 (939)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--------------~~~ 406 (939)
||.|+||||||||+||||+++|+|+++|+....... ........++.++|+.|+..|+++. ..+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFP--SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccC--CCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 899999999999999999999999999976321111 1122235679999999999998743 246
Q ss_pred cchHHHHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccc
Q 002303 407 VAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVD 486 (939)
Q Consensus 407 i~P~~f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~ 486 (939)
++|..|+.+++...|.|.++.||||||||.+|||.||+++... ..+.+.+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~~~~~~~ 128 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------------------------LGLNPND 128 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------------------------ccCCchh
Confidence 8999999999999999999999999999999999999987521 1234789
Q ss_pred cccEEEEeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccC
Q 002303 487 LCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLR 566 (939)
Q Consensus 487 lF~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~ 566 (939)
+|+|.++++++|..|++++.+.|+|.+|+|+||......
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~----------------------------------------- 167 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATE----------------------------------------- 167 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccc-----------------------------------------
Confidence 999999999999999999999999999999998542000
Q ss_pred CccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEe
Q 002303 567 NHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGR 646 (939)
Q Consensus 567 ~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 646 (939)
. . +
T Consensus 168 -~-----------------~-------------------------------------~---------------------- 170 (311)
T cd02658 168 -K-----------------E-------------------------------------E---------------------- 170 (311)
T ss_pred -c-----------------c-------------------------------------c----------------------
Confidence 0 0 0
Q ss_pred ccCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEe
Q 002303 647 LSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRL 726 (939)
Q Consensus 647 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (939)
.
T Consensus 171 -----------------------------------------------------------~-------------------- 171 (311)
T cd02658 171 -----------------------------------------------------------G-------------------- 171 (311)
T ss_pred -----------------------------------------------------------c--------------------
Confidence 0
Q ss_pred cCCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCC
Q 002303 727 DSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPE 806 (939)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~ 806 (939)
......++|++||+.|+.+|.++
T Consensus 172 -------------------------------------------------------~~~~~~~sl~~~L~~~~~~e~i~-- 194 (311)
T cd02658 172 -------------------------------------------------------ELVYEPVPLEDCLKAYFAPETIE-- 194 (311)
T ss_pred -------------------------------------------------------cccCCCCCHHHHHHHHcCccccc--
Confidence 00002469999999999999996
Q ss_pred CCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEec-cccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEE
Q 002303 807 DMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS-RYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISN 885 (939)
Q Consensus 807 d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVin 885 (939)
++|++|++++.|+|+..|.++|+|||||||||.++ .+...|+++.|.|| ..| .+..|+|+|||+
T Consensus 195 --~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p-~~l------------~~~~Y~L~~vI~ 259 (311)
T cd02658 195 --DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVP-EEL------------GPGKYELIAFIS 259 (311)
T ss_pred --ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccC-CcC------------CCCcEEEEEEEE
Confidence 58999999999999999999999999999999995 45678999999999 455 235799999999
Q ss_pred eec-cCCCCeEEEEEEeC---CCCEEEEcCCcceecCccccCCCceEEEEEE
Q 002303 886 HYG-GMGGGHYTAFVDLG---HKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 933 (939)
Q Consensus 886 H~G-~l~gGHYtAy~k~~---~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~ 933 (939)
|.| ++++||||||+|.. +++||.|||+.|+++++.++.+..||||||+
T Consensus 260 H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 260 HKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred ccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 999 69999999999984 3899999999999999999999999999996
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-56 Score=494.54 Aligned_cols=302 Identities=36% Similarity=0.612 Sum_probs=262.5
Q ss_pred ccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHHHhh
Q 002303 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLAN 418 (939)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~l~~ 418 (939)
++||.|+||||||||+||+|+|+|+|++++++.-+... ......++.++|+.++..|+......+.|..|..++..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~ 76 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKD----CCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQ 76 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhh----ccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHH
Confidence 58999999999999999999999999999985322111 11123468899999999998888889999999999999
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeEEec
Q 002303 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (939)
Q Consensus 419 ~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C 498 (939)
..+.|..+.||||+|||.+|||.||+++......... ........++|.++|+|++.++++|
T Consensus 77 ~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~F~g~~~~~~~C 138 (304)
T cd02661 77 ISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVKC 138 (304)
T ss_pred HHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------------------cCccccCCChhhhcCCcEEeeeEEe
Confidence 9999999999999999999999999886543221100 0112344678999999999999999
Q ss_pred CCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeec
Q 002303 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (939)
Q Consensus 499 ~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~ 578 (939)
..|++.+.++|+|+.|+|+||..
T Consensus 139 ~~C~~~s~~~e~~~~l~l~i~~~--------------------------------------------------------- 161 (304)
T cd02661 139 LNCKHVSNTYDPFLDLSLDIKGA--------------------------------------------------------- 161 (304)
T ss_pred CCCCCCcCccccceeeeeecCCC---------------------------------------------------------
Confidence 99999999999999999988621
Q ss_pred ceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhHHHH
Q 002303 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (939)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 658 (939)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCC
Q 002303 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (939)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (939)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccccCcc
Q 002303 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (939)
Q Consensus 739 ~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~ 818 (939)
.+|++||+.|+.+|.+++++.|+|++|++.+
T Consensus 162 -------------------------------------------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~ 192 (304)
T cd02661 162 -------------------------------------------------DSLEDALEQFTKPEQLDGENKYKCERCKKKV 192 (304)
T ss_pred -------------------------------------------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCcc
Confidence 1678999999999999999999999999999
Q ss_pred eeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeec-cCCCCeEEE
Q 002303 819 QASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGGGHYTA 897 (939)
Q Consensus 819 ~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~gGHYtA 897 (939)
.|+|+..|.++|+||+|||+||.+. ...|+.+.|.|| +.|||.+|+..... ....|+|+|||+|+| ++++|||+|
T Consensus 193 ~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~-~~L~l~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GHY~~ 268 (304)
T cd02661 193 KASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFP-ETLDLSPYMSQPND-GPLKYKLYAVLVHSGFSPHSGHYYC 268 (304)
T ss_pred ceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecC-CeechhhccccCCC-CCceeeEEEEEEECCCCCCCcCCEE
Confidence 9999999999999999999999988 568999999999 58999999986443 678999999999999 569999999
Q ss_pred EEEeCCCCEEEEcCCcceecCccccCCCceEEEEE
Q 002303 898 FVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFY 932 (939)
Q Consensus 898 y~k~~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY 932 (939)
|+|..+++||.|||+.|+++++++|.+..||||||
T Consensus 269 ~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y 303 (304)
T cd02661 269 YVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303 (304)
T ss_pred EEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEe
Confidence 99987789999999999999999999999999999
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.3e-56 Score=497.68 Aligned_cols=298 Identities=29% Similarity=0.492 Sum_probs=253.0
Q ss_pred cccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHHHh
Q 002303 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLA 417 (939)
Q Consensus 338 g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~l~ 417 (939)
|++||.|+||||||||+||||+++|+|++++++..... .......+..+|+.|+..|+.+....+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~-----~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE-----DDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc-----cCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 78999999999999999999999999999998642110 1112356899999999999877766666665542222
Q ss_pred hcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeEEe
Q 002303 418 NFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLV 497 (939)
Q Consensus 418 ~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~ 497 (939)
...+.|..++|||||||+.+||+.|+++++.. ...++|.++|+|.+..+++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~~~ 126 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------------------GQEGLIKNLFGGKLVNYII 126 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------------------cccchhhhhCceEEEeEEE
Confidence 22356888999999999999999999887431 1235699999999999999
Q ss_pred cCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEee
Q 002303 498 CPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIY 577 (939)
Q Consensus 498 C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~ 577 (939)
|..|++.+.+.++|+.|+|++|..
T Consensus 127 C~~C~~~s~~~e~f~~l~l~i~~~-------------------------------------------------------- 150 (334)
T cd02659 127 CKECPHESEREEYFLDLQVAVKGK-------------------------------------------------------- 150 (334)
T ss_pred ecCCCceecccccceEEEEEcCCC--------------------------------------------------------
Confidence 999999999999999999987621
Q ss_pred cceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhHHH
Q 002303 578 RSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIR 657 (939)
Q Consensus 578 ~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~ 657 (939)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccC
Q 002303 658 KLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMN 737 (939)
Q Consensus 658 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (939)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccccCc
Q 002303 738 EPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKH 817 (939)
Q Consensus 738 ~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~ 817 (939)
.+|++||+.|+.+|.+++++.|.|++|++.
T Consensus 151 --------------------------------------------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~ 180 (334)
T cd02659 151 --------------------------------------------------KNLEESLDAYVQGETLEGDNKYFCEKCGKK 180 (334)
T ss_pred --------------------------------------------------CCHHHHHHHhcCeeEecCCccEecCcCCCc
Confidence 168899999999999999999999999999
Q ss_pred ceeEEEEEeeeCCCeEEEEEeeeEecc--ccccccceeeecCCCCCCCCCcccccC----------CCCCceEEEEEEEE
Q 002303 818 WQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKN----------SQLSNRYVLYAISN 885 (939)
Q Consensus 818 ~~AtKk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~----------~~~~~~YdL~AVin 885 (939)
+.|.|+..|.++|+||+|||+||.|+. ..+.|+++.|.|| ..|||++|+.... ......|+|+|||+
T Consensus 181 ~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~ 259 (334)
T cd02659 181 VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLV 259 (334)
T ss_pred ccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCC-ceecCccccccccccccccccccCCCCeeEEEEEEEE
Confidence 999999999999999999999999973 4578999999999 5899999987542 23568899999999
Q ss_pred eeccCCCCeEEEEEEe-CCCCEEEEcCCcceecCccccC----------------------CCceEEEEEEEec
Q 002303 886 HYGGMGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIK----------------------TSAAYVLFYKRVS 936 (939)
Q Consensus 886 H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~----------------------s~~AYvLFY~R~~ 936 (939)
|.|+..+|||+||+|. .+++||.|||+.|+++++++|. +.+||||||+|++
T Consensus 260 H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 260 HSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred ecCCCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 9999999999999998 5799999999999999988883 4579999999976
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-50 Score=434.97 Aligned_cols=122 Identities=35% Similarity=0.634 Sum_probs=112.0
Q ss_pred cCHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEecc-ccccccceeeecCCCCCCCCCc
Q 002303 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLSNY 866 (939)
Q Consensus 788 isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~ 866 (939)
.+|++||+.|+.+|.+++ |.|++| +..|.++|+|||||||||.|+. +...|+++.|.||. .|
T Consensus 96 ~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~-~l----- 158 (240)
T cd02662 96 TTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPE-RL----- 158 (240)
T ss_pred CCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCC-cc-----
Confidence 489999999999999964 899999 6789999999999999999997 67889999999994 66
Q ss_pred ccccCCCCCceEEEEEEEEeeccCCCCeEEEEEEeC---------------------CCCEEEEcCCcceecCcccc-CC
Q 002303 867 VCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLG---------------------HKRWFEFDDDRVYPVSEDNI-KT 924 (939)
Q Consensus 867 v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~---------------------~~~Wy~fnDs~Vs~vs~~~v-~s 924 (939)
....|+|+|||+|.|+.++|||+||+|.. .++||+|||+.|+++++++| .+
T Consensus 159 -------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~ 231 (240)
T cd02662 159 -------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQ 231 (240)
T ss_pred -------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhC
Confidence 34789999999999988999999999974 38999999999999999999 99
Q ss_pred CceEEEEEE
Q 002303 925 SAAYVLFYK 933 (939)
Q Consensus 925 ~~AYvLFY~ 933 (939)
++||||||+
T Consensus 232 ~~aY~LfYe 240 (240)
T cd02662 232 KSAYMLFYE 240 (240)
T ss_pred CCEEEEEeC
Confidence 999999996
No 18
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-48 Score=413.75 Aligned_cols=146 Identities=50% Similarity=0.908 Sum_probs=136.5
Q ss_pred cCHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcc
Q 002303 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYV 867 (939)
Q Consensus 788 isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v 867 (939)
.+|++||+.|+.+|.+++.+.|.|++|++++.+.++..|.++|+||+|||+||.++.....|+++.|.||.+.|||++|+
T Consensus 84 ~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~ 163 (230)
T cd02674 84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163 (230)
T ss_pred CCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999888899999999998789999997
Q ss_pred cccCCCCCceEEEEEEEEeeccCCCCeEEEEEEeC-CCCEEEEcCCcceecCccccCCCceEEEEEE
Q 002303 868 CCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLG-HKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 933 (939)
Q Consensus 868 ~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~-~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~ 933 (939)
.........+|+|+|||.|.|..++|||+||+|.. +++||.|||+.|++++++++....||||||+
T Consensus 164 ~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 164 DTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred CcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 55555577899999999999977999999999984 4899999999999999999999999999996
No 19
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-49 Score=448.31 Aligned_cols=149 Identities=40% Similarity=0.608 Sum_probs=133.3
Q ss_pred CCcCHHHHHHHhhCcccCCCCCCCCCccccC---------------------------cceeEEEEEeeeCCCeEEEEEe
Q 002303 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKK---------------------------HWQASKKLDLWRSPDILVIHLK 838 (939)
Q Consensus 786 ~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~---------------------------~~~AtKk~~i~~lP~iLiIhLK 838 (939)
.++|+++||..||+.|.|.++|+|-|++|.+ ...|.|++.|-.+|+||+||||
T Consensus 676 ~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlK 755 (877)
T KOG1873|consen 676 EPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLK 755 (877)
T ss_pred CCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHh
Confidence 5899999999999999999999999999976 1237899999999999999999
Q ss_pred eeEec-cccccccceeeecCCCCCCCCCcccccCC----CCCceEEEEEEEEeeccCCCCeEEEEEEe------------
Q 002303 839 RFSFS-RYFKSKLDTYVDFPIDDLDLSNYVCCKNS----QLSNRYVLYAISNHYGGMGGGHYTAFVDL------------ 901 (939)
Q Consensus 839 RF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~~~~----~~~~~YdL~AVinH~G~l~gGHYtAy~k~------------ 901 (939)
||... +....|++.+|+|+ +-+||.+|+..... .....|+|+||+.|.|.|.+||||||+|.
T Consensus 756 rf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~ 834 (877)
T KOG1873|consen 756 RFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNS 834 (877)
T ss_pred hhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCcccc
Confidence 99987 44478999999999 89999999874322 24568999999999999999999999996
Q ss_pred ---------CCCCEEEEcCCcceecCccccCCCceEEEEEEEe
Q 002303 902 ---------GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRV 935 (939)
Q Consensus 902 ---------~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~ 935 (939)
..++||+..|++|.+|++++|..+.||||||+|+
T Consensus 835 ~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 835 KDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 1479999999999999999999999999999995
No 20
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-45 Score=393.57 Aligned_cols=129 Identities=26% Similarity=0.466 Sum_probs=107.5
Q ss_pred CHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCccc
Q 002303 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVC 868 (939)
Q Consensus 789 sL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 868 (939)
+|++|++.|.++|.++ |.|++|+.. .|+|+..|+++|+||+||||||.+.. ++...+.. ..++|.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~----~~~~~~~~--~~~~~~~~~~ 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI----ATSDYLKK--NEEIMKKYCG 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc----cccccccc--cccccccccC
Confidence 4677888888777764 899999975 89999999999999999999998643 23333333 3577888865
Q ss_pred ccCCCCCceEEEEEEEEeec-cCCCCeEEEEEEe-C-CCCEEEEcCCcceecCccccC---CCceEEEEEE
Q 002303 869 CKNSQLSNRYVLYAISNHYG-GMGGGHYTAFVDL-G-HKRWFEFDDDRVYPVSEDNIK---TSAAYVLFYK 933 (939)
Q Consensus 869 ~~~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~-~-~~~Wy~fnDs~Vs~vs~~~v~---s~~AYvLFY~ 933 (939)
....|+|+|||+|.| ++++||||||+|. . +++||.|||+.|+++++++|. +.+||||||+
T Consensus 180 -----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 -----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred -----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 346799999999999 5999999999998 3 689999999999999999998 6799999996
No 21
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-45 Score=421.66 Aligned_cols=324 Identities=33% Similarity=0.591 Sum_probs=272.3
Q ss_pred CcccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCC-chHHHHHHHHHHHHhcCCC-CCccchH
Q 002303 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGL-NGELALAFGDLLRKLWAPG-GIPVAPR 410 (939)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~-~~~l~~~l~~L~~~l~~~~-~~~i~P~ 410 (939)
....-++.||.|+|||||||++||+|.+.+..+...+...+.. .+.+. ..++.+++..++..||++. ..+++|.
T Consensus 155 ~~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~----~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~ 230 (492)
T KOG1867|consen 155 STTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSK----EPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPF 230 (492)
T ss_pred ceeeecccccccccHHHHHHHHHHHhhccchhhccchhhhccc----CCCCCCCcchhhhhhhhhhHhhcCCCCCCcChH
Confidence 3456799999999999999999999999999999888665551 22222 4679999999999999999 8999999
Q ss_pred HHHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccE
Q 002303 411 MFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQG 490 (939)
Q Consensus 411 ~f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G 490 (939)
.+...++...|.|.||+|||||||+..+++.+|.+.+...+.. ..... . ..-.+++...|.|
T Consensus 231 ~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~---~~~~~------------~---~~c~~iv~~~F~G 292 (492)
T KOG1867|consen 231 ELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSL---IASQS------------N---KQCPCIVHTIFSG 292 (492)
T ss_pred HHHHHHHHhCcccccccccchHHHHHHhccccccccccccccc---ccccC------------C---cccccccceeecc
Confidence 9999999999999999999999999999999998761111110 00000 0 0235789999999
Q ss_pred EEEeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccc
Q 002303 491 QYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEK 570 (939)
Q Consensus 491 ~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~ 570 (939)
++.+.++|..|+..|.+++||++|+|.||.....
T Consensus 293 ~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~---------------------------------------------- 326 (492)
T KOG1867|consen 293 TLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTS---------------------------------------------- 326 (492)
T ss_pred eeccceeehhhcceeeeccCccceeeecchhccC----------------------------------------------
Confidence 9999999999999999999999999999853100
Q ss_pred eeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCC
Q 002303 571 LLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDL 650 (939)
Q Consensus 571 l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~ 650 (939)
+
T Consensus 327 -----------------------------------------------------------------------~-------- 327 (492)
T KOG1867|consen 327 -----------------------------------------------------------------------S-------- 327 (492)
T ss_pred -----------------------------------------------------------------------c--------
Confidence 0
Q ss_pred CChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCC
Q 002303 651 TNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIR 730 (939)
Q Consensus 651 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (939)
. .. .
T Consensus 328 --------------------~----------------------------------~~--------------------~-- 331 (492)
T KOG1867|consen 328 --------------------S----------------------------------VR--------------------S-- 331 (492)
T ss_pred --------------------c----------------------------------cc--------------------c--
Confidence 0 00 0
Q ss_pred CcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCC
Q 002303 731 PTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWY 810 (939)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~ 810 (939)
...++.+|++.|..-|.++......
T Consensus 332 -------------------------------------------------------~~~~~~~cl~~~~~~~~~~~~~~~~ 356 (492)
T KOG1867|consen 332 -------------------------------------------------------PELTLLDCLDRFTRSEQLGKDSKYK 356 (492)
T ss_pred -------------------------------------------------------chhhhhhhhhhhhhhhhcCcccccc
Confidence 0136899999999999999999999
Q ss_pred CccccCcceeEEEEEeeeCCCeEEEEEeeeEecccccc-ccceeeecCCCCCCCCCccccc---CC-CCCceEEEEEEEE
Q 002303 811 CPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKS-KLDTYVDFPIDDLDLSNYVCCK---NS-QLSNRYVLYAISN 885 (939)
Q Consensus 811 C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~-Ki~~~V~FPi~~LDls~~v~~~---~~-~~~~~YdL~AVin 885 (939)
|..|+..+.++|++.|-++|.+|.+|||||.+...... |+++.|.|| ..|+|.+|+..+ .. ..+..|+|+|||+
T Consensus 357 c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp-~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~ 435 (492)
T KOG1867|consen 357 CSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFP-VLLNMKPYCSSEKLKSQDNPDHLYELRAVVV 435 (492)
T ss_pred cCCcccccccccccccccCCceeeeeeccccccccccccccCcccccc-hhhcCCccccccccccCCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999854433 999999999 699999999851 11 2579999999999
Q ss_pred eeccCCCCeEEEEEEeCCCCEEEEcCCcceecCccccCCCceEEEEEEEec
Q 002303 886 HYGGMGGGHYTAFVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 936 (939)
Q Consensus 886 H~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~~ 936 (939)
|+|.+++||||||+|+ .+.||+|||+.|+.+++++|.+..||+|||.++.
T Consensus 436 H~G~~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~ 485 (492)
T KOG1867|consen 436 HHGTVGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQ 485 (492)
T ss_pred eccCCCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHhhhchhhheehhHHh
Confidence 9999999999999997 6789999999999999999999999999998753
No 22
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.9e-45 Score=380.35 Aligned_cols=126 Identities=25% Similarity=0.385 Sum_probs=110.8
Q ss_pred CHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCccc
Q 002303 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVC 868 (939)
Q Consensus 789 sL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 868 (939)
+|++||+.|+.+|.+++++.++ .+.++|+..|+++|+||+||||||.|+...+.|+.+.|.||. .|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~-~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-II------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeC-cc-------
Confidence 7999999999999998765433 345778888999999999999999999877899999999995 55
Q ss_pred ccCCCCCceEEEEEEEEeeccCCCCeEEEEEEe-CCCCEEEEcCCcceecCccccC--------CCceEEEEEE
Q 002303 869 CKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIK--------TSAAYVLFYK 933 (939)
Q Consensus 869 ~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~--------s~~AYvLFY~ 933 (939)
....|+|+|||+|.|++++|||+||+|. .+++||+|||+.|+++++++|. ..+||||||.
T Consensus 160 -----~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 -----QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred -----CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 2358999999999999999999999997 5789999999999999998886 3589999994
No 23
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=5.4e-44 Score=386.20 Aligned_cols=258 Identities=40% Similarity=0.713 Sum_probs=213.0
Q ss_pred ccccccCCCcchHHHHHHHHhCChhHHHHHhhh-cccccccCCCCCCchHHHHHHHHHHHHhcCC--CCCccchHHHHHH
Q 002303 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAP--GGIPVAPRMFKLK 415 (939)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~--~~~~i~P~~f~~~ 415 (939)
++||.|.||||||||+||||+++|+|++++++. +....+..++......++.+|+.|+..||.. ....+.|..|..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999854 2333344555556678999999999999998 6788999999999
Q ss_pred HhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeE
Q 002303 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (939)
Q Consensus 416 l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (939)
++...+.|.++.||||+|||..||+.|++++..... ...|........+++.++|.|++.+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~~~~~~~ 142 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK------------------RKSWKNTNSSEDSLISDLFGGQFESS 142 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS------------------HHHHHHHHCCEESHHHHHH-EEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc------------------cccccccccccccccccccccccccc
Confidence 999999999999999999999999999998765322 23455666677788888999988888
Q ss_pred EecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeE
Q 002303 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (939)
Q Consensus 496 i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e 575 (939)
++|..|+..
T Consensus 143 ~~c~~c~~~----------------------------------------------------------------------- 151 (269)
T PF00443_consen 143 IKCSSCKNS----------------------------------------------------------------------- 151 (269)
T ss_dssp EEETTTTCE-----------------------------------------------------------------------
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 888777644
Q ss_pred eecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhH
Q 002303 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (939)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 655 (939)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002303 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (939)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (939)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcccc
Q 002303 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (939)
Q Consensus 736 ~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck 815 (939)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceeEEEEEeeeCCCeEEEEEeeeEeccc--cccccceeeecCCCCCCCCCcccccCC--CCCceEEEEEEEEeeccCC
Q 002303 816 KHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKNS--QLSNRYVLYAISNHYGGMG 891 (939)
Q Consensus 816 ~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~--~~~~~YdL~AVinH~G~l~ 891 (939)
+..|+++|+||+|||+||.|+.. ...|+.+.|.||++.|||++++..+.. .....|+|+|||+|+|+.+
T Consensus 152 -------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~ 224 (269)
T PF00443_consen 152 -------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSAD 224 (269)
T ss_dssp -------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTT
T ss_pred -------ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhccccccc
Confidence 23567899999999999987753 578999999999779999999876542 1368999999999999999
Q ss_pred CCeEEEEEEe-CCCCEEEEcCCcceecCccccCC---CceEEEEE
Q 002303 892 GGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKT---SAAYVLFY 932 (939)
Q Consensus 892 gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s---~~AYvLFY 932 (939)
+|||+||+|. .+++||.|||+.|++++.++|.. ..||||||
T Consensus 225 ~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 225 SGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp SEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred cceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 9999999998 44579999999999999999987 99999999
No 24
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.1e-44 Score=398.62 Aligned_cols=159 Identities=21% Similarity=0.278 Sum_probs=122.8
Q ss_pred ccccccCCCcchHHHHHHHHhCChhHHHHHhhhcc--cccc----cCCCC----------CCchHHHHHHHHHHHHhcCC
Q 002303 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQ--KEIN----YENPL----------GLNGELALAFGDLLRKLWAP 402 (939)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~--~~~~----~~~~~----------~~~~~l~~~l~~L~~~l~~~ 402 (939)
|+||.|+||||||||+||||+++|+||+++++.-. .+.. ..... .....++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999985311 1000 00000 01236899999999999998
Q ss_pred CCCccchHHHHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCC
Q 002303 403 GGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDS 482 (939)
Q Consensus 403 ~~~~i~P~~f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~S 482 (939)
...++.|..++..+.. .|||||||+..||+.||++++.....+.. ++. .......+
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~--------~~~--------~~~~~~~~ 136 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAG--------PDT--------EDDKEQSD 136 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccC--------ccc--------ccccchhh
Confidence 8899999999986653 89999999999999999998754321110 000 00123457
Q ss_pred cccccccEEEEeEEecCCCC---CeeeeecCCeeEEeeCCCC
Q 002303 483 IIVDLCQGQYRSMLVCPVCN---KVSVTFDPLMYLSLPIPST 521 (939)
Q Consensus 483 iI~~lF~G~~~s~i~C~~C~---~~s~~~e~F~~LsL~iP~~ 521 (939)
+|.++|.|+++++++|..|+ ..+.+.|+|++|+|+|+.+
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~ 178 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKK 178 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcc
Confidence 89999999999999999997 8899999999999999753
No 25
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-43 Score=393.23 Aligned_cols=153 Identities=30% Similarity=0.493 Sum_probs=129.2
Q ss_pred cccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCC---------
Q 002303 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGG--------- 404 (939)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~--------- 404 (939)
...||.+||.|+||+||||||||+|+++|.|...++... .+-...+......+.+++.+|+..|.++..
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~--~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~ 379 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQE--RIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSN 379 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhcccc--ceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccc
Confidence 557899999999999999999999999999988877551 121223344467899999999999977542
Q ss_pred -CccchHHHHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCC-C
Q 002303 405 -IPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARND-S 482 (939)
Q Consensus 405 -~~i~P~~f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~-S 482 (939)
..|+|..|+..+++-+|.|+..+||||||||.+||+.|.+.. +.. .
T Consensus 380 qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~--------------------------------rs~~~ 427 (763)
T KOG0944|consen 380 QNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENS--------------------------------RSSLP 427 (763)
T ss_pred cCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcc--------------------------------cccCC
Confidence 358999999999999999999999999999999999998532 111 2
Q ss_pred cccccccEEEEeEEecCCCCCeeeeecCCeeEEeeCCC
Q 002303 483 IIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPS 520 (939)
Q Consensus 483 iI~~lF~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~ 520 (939)
.+.++|...+..++.|..|++++.+.++-+.+.||||.
T Consensus 428 nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 428 NPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred CHHHHHHhhhhhhhhhhccccccccchhheeeEeeccc
Confidence 38899999999999999999999999999999999885
No 26
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-44 Score=405.29 Aligned_cols=304 Identities=27% Similarity=0.477 Sum_probs=263.6
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCC-CCCchHHHHHHHHHHHHhcCCCCCccchHHHH
Q 002303 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENP-LGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (939)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~-~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~ 413 (939)
..-|+|||.|-|+|||||+++|-|.++|.+++-++..++. .+++ ..-...+.+.++.+|..|-.+.-.++.|+.|.
T Consensus 91 pp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~---td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~W 167 (944)
T KOG1866|consen 91 PPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT---TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFW 167 (944)
T ss_pred CCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc---ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHH
Confidence 4569999999999999999999999999999987654433 1222 11123388999999999988888899999999
Q ss_pred HHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEE
Q 002303 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (939)
Q Consensus 414 ~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~ 493 (939)
+.++.........+||||-||+..|||.+.|-|+++... .++...|+|.+.
T Consensus 168 k~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p-----------------------------~lf~n~f~G~ys 218 (944)
T KOG1866|consen 168 KQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHP-----------------------------QLFSNTFGGSYS 218 (944)
T ss_pred HHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCc-----------------------------HHHHHHhcCccc
Confidence 999888777888999999999999999999999876532 357788999999
Q ss_pred eEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 494 s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
..-.|..|-+.-...|+|+.|+|.|--
T Consensus 219 dqKIC~~CpHRY~~eE~F~~l~l~i~~----------------------------------------------------- 245 (944)
T KOG1866|consen 219 DQKICQGCPHRYECEESFTTLNLDIRH----------------------------------------------------- 245 (944)
T ss_pred hhhhhccCCcccCccccceeeeeeccc-----------------------------------------------------
Confidence 999999999999999999999886520
Q ss_pred eEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCCh
Q 002303 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (939)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (939)
T Consensus 246 -------------------------------------------------------------------------------- 245 (944)
T KOG1866|consen 246 -------------------------------------------------------------------------------- 245 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcc
Q 002303 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (939)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (939)
T Consensus 246 -------------------------------------------------------------------------------- 245 (944)
T KOG1866|consen 246 -------------------------------------------------------------------------------- 245 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcc
Q 002303 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (939)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~ 813 (939)
-+|++.|+.|.+.|.|+|.|+|+|++
T Consensus 246 ------------------------------------------------------~nLeesLeqfv~gevlEG~nAYhCeK 271 (944)
T KOG1866|consen 246 ------------------------------------------------------QNLEESLEQFVKGEVLEGANAYHCEK 271 (944)
T ss_pred ------------------------------------------------------chHHHHHHHHHHHHHhcCcchhhhhh
Confidence 16899999999999999999999999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEeeeEec--cccccccceeeecCCCCCCCCCcccccC----------------CCCC
Q 002303 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNYVCCKN----------------SQLS 875 (939)
Q Consensus 814 Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~----------------~~~~ 875 (939)
|++++...|+..|.+||+||+||||||.|+ +....|-+..+.|| ..|||.||....- ..++
T Consensus 272 CdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t 350 (944)
T KOG1866|consen 272 CDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAGT 350 (944)
T ss_pred hhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCcccccccCc
Confidence 999999999999999999999999999997 67788999999999 6999999987421 1368
Q ss_pred ceEEEEEEEEeeccCCCCeEEEEEEe----CCCCEEEEcCCcceecCccccC--------------------CCceEEEE
Q 002303 876 NRYVLYAISNHYGGMGGGHYTAFVDL----GHKRWFEFDDDRVYPVSEDNIK--------------------TSAAYVLF 931 (939)
Q Consensus 876 ~~YdL~AVinH~G~l~gGHYtAy~k~----~~~~Wy~fnDs~Vs~vs~~~v~--------------------s~~AYvLF 931 (939)
.+|+|+||+.|.|...+|||.+|+|. ..++||+|||..|++.+-.++. --+|||||
T Consensus 351 ~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlF 430 (944)
T KOG1866|consen 351 TKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLF 430 (944)
T ss_pred ceeEEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHH
Confidence 89999999999999999999999997 5689999999999999876653 13799999
Q ss_pred EEEecCC
Q 002303 932 YKRVSDV 938 (939)
Q Consensus 932 Y~R~~~~ 938 (939)
|+|+++.
T Consensus 431 Yer~~d~ 437 (944)
T KOG1866|consen 431 YERMDDI 437 (944)
T ss_pred HHHhcCC
Confidence 9999864
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-42 Score=384.41 Aligned_cols=297 Identities=27% Similarity=0.447 Sum_probs=250.5
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHH
Q 002303 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKL 414 (939)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~ 414 (939)
...|.+||.|+|.||||||.||+|+.+..||+.+.+ +.+++|.+ ...++.+|+++|.+|..+ ..+++..+|..
T Consensus 189 keTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~-----ipTd~p~g-rdSValaLQr~Fynlq~~-~~PvdTteltr 261 (1089)
T COG5077 189 KETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYG-----IPTDHPRG-RDSVALALQRLFYNLQTG-EEPVDTTELTR 261 (1089)
T ss_pred cceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhc-----CCCCCCCc-cchHHHHHHHHHHHHhcc-CCCcchHHhhh
Confidence 457999999999999999999999999999997743 34455544 456999999999999554 47899999998
Q ss_pred HHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEe
Q 002303 415 KLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRS 494 (939)
Q Consensus 415 ~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s 494 (939)
..++. .+..+.|||.|||-+.|.|.|+..++... + ...+..+|.|.+++
T Consensus 262 sfgWd--s~dsf~QHDiqEfnrVl~DnLEksmrgt~----V-------------------------Enaln~ifVgkmks 310 (1089)
T COG5077 262 SFGWD--SDDSFMQHDIQEFNRVLQDNLEKSMRGTV----V-------------------------ENALNGIFVGKMKS 310 (1089)
T ss_pred hcCcc--cchHHHHHhHHHHHHHHHHHHHHhhcCCh----h-------------------------hhHHhHHHHHHhhc
Confidence 87763 46788999999999999999986443211 0 01278899999999
Q ss_pred EEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeee
Q 002303 495 MLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVA 574 (939)
Q Consensus 495 ~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~ 574 (939)
.+.|-+-.++|.+.|.|+++.|++..
T Consensus 311 yikCvnvnyEsarvedfwdiqlNvK~------------------------------------------------------ 336 (1089)
T COG5077 311 YIKCVNVNYESARVEDFWDIQLNVKG------------------------------------------------------ 336 (1089)
T ss_pred eeeEEEechhhhhHHHHHHHHhcccc------------------------------------------------------
Confidence 99999988888888888877775320
Q ss_pred EeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChh
Q 002303 575 EIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGS 654 (939)
Q Consensus 575 e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 654 (939)
T Consensus 337 -------------------------------------------------------------------------------- 336 (1089)
T COG5077 337 -------------------------------------------------------------------------------- 336 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccc
Q 002303 655 DIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEI 734 (939)
Q Consensus 655 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (939)
T Consensus 337 -------------------------------------------------------------------------------- 336 (1089)
T COG5077 337 -------------------------------------------------------------------------------- 336 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccc
Q 002303 735 KMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRC 814 (939)
Q Consensus 735 ~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~C 814 (939)
.-+|+|.++.+.+.|+|+|+|.|+|.+-
T Consensus 337 ----------------------------------------------------~knLqeSfr~yIqvE~l~GdN~Y~ae~~ 364 (1089)
T COG5077 337 ----------------------------------------------------MKNLQESFRRYIQVETLDGDNRYNAEKH 364 (1089)
T ss_pred ----------------------------------------------------hhhHHHHHHHhhhheeccCCcccccccc
Confidence 1168999999999999999999999875
Q ss_pred cCcceeEEEEEeeeCCCeEEEEEeeeEec--cccccccceeeecCCCCCCCCCcccccCC---CCCceEEEEEEEEeecc
Q 002303 815 KKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNYVCCKNS---QLSNRYVLYAISNHYGG 889 (939)
Q Consensus 815 k~~~~AtKk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~~---~~~~~YdL~AVinH~G~ 889 (939)
..|.|.|-.-+.++|+||-++||||.|+ +.++-||++.-+||+ .+||.||+..... ...+.|.||||.+|.|.
T Consensus 365 -GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~-eiDl~pfld~da~ksen~d~vY~LygVlVHsGD 442 (1089)
T COG5077 365 -GLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPL-EIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD 442 (1089)
T ss_pred -cchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcc-hhccccccCchhhhhcccCcEEEEEEEEEeccc
Confidence 3689999999999999999999999987 778899999999994 9999999986432 24589999999999999
Q ss_pred CCCCeEEEEEEe-CCCCEEEEcCCcceecCccccCC----------------------CceEEEEEEEecC
Q 002303 890 MGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKT----------------------SAAYVLFYKRVSD 937 (939)
Q Consensus 890 l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s----------------------~~AYvLFY~R~~~ 937 (939)
+.+|||.|+.|. .+|+||+|||.+|+++++.+|.. -+||+|.|-|++.
T Consensus 443 l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 443 LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence 999999999997 68999999999999999887741 2699999999864
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-39 Score=347.99 Aligned_cols=142 Identities=45% Similarity=0.762 Sum_probs=126.2
Q ss_pred cCHHHHHHHhhCcccCCCCCCCCCcccc--CcceeEEEEEeeeCCCeEEEEEeeeEecc-ccccccceeeecCCCCCCCC
Q 002303 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCK--KHWQASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLS 864 (939)
Q Consensus 788 isL~dCL~~F~~~E~L~~~d~w~C~~Ck--~~~~AtKk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls 864 (939)
.+|++||+.++..|.+.+ ..|..|+ +.+.+.++..|.++|+||+|||+||.+.. ....|+++.|.|| +.|++.
T Consensus 99 ~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~ 174 (255)
T cd02257 99 VSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLS 174 (255)
T ss_pred CcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCC-CcccCc
Confidence 479999999999998865 5688888 68899999999999999999999999987 7788999999999 699999
Q ss_pred Ccccc-----cCCCCCceEEEEEEEEeecc-CCCCeEEEEEEeCC-CCEEEEcCCcceecCcccc-----CCCceEEEEE
Q 002303 865 NYVCC-----KNSQLSNRYVLYAISNHYGG-MGGGHYTAFVDLGH-KRWFEFDDDRVYPVSEDNI-----KTSAAYVLFY 932 (939)
Q Consensus 865 ~~v~~-----~~~~~~~~YdL~AVinH~G~-l~gGHYtAy~k~~~-~~Wy~fnDs~Vs~vs~~~v-----~s~~AYvLFY 932 (939)
.++.. ........|+|+|||+|.|. .++|||+||+|... ++||.|||+.|++++.+++ ....||+|||
T Consensus 175 ~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y 254 (255)
T cd02257 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFY 254 (255)
T ss_pred cccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEE
Confidence 88752 22336789999999999995 59999999999844 8999999999999999998 5889999999
Q ss_pred E
Q 002303 933 K 933 (939)
Q Consensus 933 ~ 933 (939)
+
T Consensus 255 ~ 255 (255)
T cd02257 255 E 255 (255)
T ss_pred C
Confidence 6
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-40 Score=355.83 Aligned_cols=135 Identities=24% Similarity=0.274 Sum_probs=116.6
Q ss_pred cCHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCC----eEEEEEeeeEecc-------ccccccceeeec
Q 002303 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPD----ILVIHLKRFSFSR-------YFKSKLDTYVDF 856 (939)
Q Consensus 788 isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~----iLiIhLKRF~~~~-------~~~~Ki~~~V~F 856 (939)
++|.+||+.|+++|.. +.|+|++|++++.|+|++.|+++|+ ||+||||||.+.. ....|++..|.|
T Consensus 117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f 193 (268)
T cd02672 117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193 (268)
T ss_pred CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence 5899999999999964 4588999999999999999999999 9999999999753 234688899999
Q ss_pred CCCCCCCCCcccccCCCCCceEEEEEEEEeecc-CCCCeEEEEEEeC-----CCCEEEEcCCcceecCccccCCCceEEE
Q 002303 857 PIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGG-MGGGHYTAFVDLG-----HKRWFEFDDDRVYPVSEDNIKTSAAYVL 930 (939)
Q Consensus 857 Pi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~-l~gGHYtAy~k~~-----~~~Wy~fnDs~Vs~vs~~~v~s~~AYvL 930 (939)
| ..+|+..+...... ...+|+|+|||+|.|. .++|||+||+|.. .++||.|||..|++|++ .||||
T Consensus 194 ~-~~~~~~~~~~~~~~-~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiL 265 (268)
T cd02672 194 K-AIDHDKLVKNRGQE-SIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYIL 265 (268)
T ss_pred c-ccccchhhhccCCC-CCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheee
Confidence 9 46777666544332 6689999999999994 5999999999983 58899999999999998 89999
Q ss_pred EEE
Q 002303 931 FYK 933 (939)
Q Consensus 931 FY~ 933 (939)
||+
T Consensus 266 fY~ 268 (268)
T cd02672 266 LYQ 268 (268)
T ss_pred ecC
Confidence 996
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-40 Score=366.09 Aligned_cols=148 Identities=35% Similarity=0.657 Sum_probs=135.7
Q ss_pred CHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEec--cccccccceeeecCCCCCCCCCc
Q 002303 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNY 866 (939)
Q Consensus 789 sL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~ 866 (939)
+++++|..|.++|.|+|.|+|.|++||+++.|.|-+.|.+.|-+|.||||||.|+ ..-|.|+++.|.|| ..|||..|
T Consensus 215 sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~ 293 (1203)
T KOG4598|consen 215 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDY 293 (1203)
T ss_pred hHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHh
Confidence 7899999999999999999999999999999999999999999999999999876 55688999999999 89999999
Q ss_pred ccccC-----------------------------------------------------------------CCCCceEEEE
Q 002303 867 VCCKN-----------------------------------------------------------------SQLSNRYVLY 881 (939)
Q Consensus 867 v~~~~-----------------------------------------------------------------~~~~~~YdL~ 881 (939)
+-... +.++.+|+|+
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 86321 0178999999
Q ss_pred EEEEeeccCCCCeEEEEEEe-CCCCEEEEcCCcceecCccccC-------------CCceEEEEEEEecC
Q 002303 882 AISNHYGGMGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIK-------------TSAAYVLFYKRVSD 937 (939)
Q Consensus 882 AVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~-------------s~~AYvLFY~R~~~ 937 (939)
||..|.|+..||||.||+|+ +.+.||+|||.+|.-+++.+|. +.+||||.|||++.
T Consensus 374 ~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~ 443 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDP 443 (1203)
T ss_pred hhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCc
Confidence 99999999999999999999 8899999999999999998885 45899999999874
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-37 Score=332.23 Aligned_cols=141 Identities=28% Similarity=0.402 Sum_probs=114.2
Q ss_pred ccccccCCCcchHHHHHHHHhCChhHHHHHhhhccccc-ccCCCCCCchHHHHHHHHHHHHhcCCC----CCccchHHHH
Q 002303 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEI-NYENPLGLNGELALAFGDLLRKLWAPG----GIPVAPRMFK 413 (939)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~-~~~~~~~~~~~l~~~l~~L~~~l~~~~----~~~i~P~~f~ 413 (939)
.+||.|+||+||+||+||.|++...+..-+....+..+ ...+| ..+|.+++.+|+..|.... ...++|..|+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P---~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNP---LECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCC---chhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 89999999999999999999999888766654333222 22334 3578999999999997654 2358999999
Q ss_pred HHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEE
Q 002303 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (939)
Q Consensus 414 ~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~ 493 (939)
..+++-+|.|..++||||+|||.|||+.|.+....+ ..+.|.++|...+.
T Consensus 380 ~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~------------------------------~~~~It~lf~Fe~e 429 (749)
T COG5207 380 MLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSY------------------------------LIPPITSLFEFEVE 429 (749)
T ss_pred HHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchh------------------------------cCCCcchhhhhhhc
Confidence 999999999999999999999999999998533221 12458999999999
Q ss_pred eEEecCCCCCeeeeecCCe
Q 002303 494 SMLVCPVCNKVSVTFDPLM 512 (939)
Q Consensus 494 s~i~C~~C~~~s~~~e~F~ 512 (939)
.++.|..|+.++..+++..
T Consensus 430 ~rlsC~~C~~v~ySye~~~ 448 (749)
T COG5207 430 RRLSCSGCMDVSYSYESML 448 (749)
T ss_pred ceecccccccccccccceE
Confidence 9999999999988766543
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=370.89 Aligned_cols=299 Identities=28% Similarity=0.394 Sum_probs=252.0
Q ss_pred cccc-cccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHH
Q 002303 336 LLGL-TGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKL 414 (939)
Q Consensus 336 ~~g~-~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~ 414 (939)
..|. +||.|+||||||||+||+|+.++.||+.+...-. ..........+..+|+.||..|..+...++.|..+..
T Consensus 166 ~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~----~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~ 241 (1093)
T KOG1863|consen 166 LTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP----FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTK 241 (1093)
T ss_pred cCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC----CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhh
Confidence 3455 9999999999999999999999999998864321 1122233455999999999999988888999999999
Q ss_pred HHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEe
Q 002303 415 KLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRS 494 (939)
Q Consensus 415 ~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s 494 (939)
.++... ..+++|||+|||+..|+|.|+..+..... ...|.++|.|.+++
T Consensus 242 ~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-----------------------------~~~l~~lf~g~~~~ 290 (1093)
T KOG1863|consen 242 SLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-----------------------------ENTLQDLFTGKMKS 290 (1093)
T ss_pred hhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-----------------------------hhhhhhhhcCCcce
Confidence 998876 56789999999999999999977644221 23488999999999
Q ss_pred EEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeee
Q 002303 495 MLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVA 574 (939)
Q Consensus 495 ~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~ 574 (939)
.+.|..|...+.+.|.|+++.|++-.
T Consensus 291 ~i~c~~~~~~s~r~e~f~d~ql~~~g------------------------------------------------------ 316 (1093)
T KOG1863|consen 291 VIKCIDVDFESSRSESFLDLQLNGKG------------------------------------------------------ 316 (1093)
T ss_pred EEEEEeeeeeccccccccCccccccc------------------------------------------------------
Confidence 99999999999888888877776420
Q ss_pred EeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChh
Q 002303 575 EIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGS 654 (939)
Q Consensus 575 e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 654 (939)
T Consensus 317 -------------------------------------------------------------------------------- 316 (1093)
T KOG1863|consen 317 -------------------------------------------------------------------------------- 316 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccc
Q 002303 655 DIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEI 734 (939)
Q Consensus 655 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (939)
T Consensus 317 -------------------------------------------------------------------------------- 316 (1093)
T KOG1863|consen 317 -------------------------------------------------------------------------------- 316 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccc
Q 002303 735 KMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRC 814 (939)
Q Consensus 735 ~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~C 814 (939)
..+|.++|+.|+..|+|.+++. ||..|
T Consensus 317 ----------------------------------------------------~~nl~~sf~~y~~~E~l~gdn~-~~~~~ 343 (1093)
T KOG1863|consen 317 ----------------------------------------------------VKNLEDSLHLYFEAEILLGDNK-YDAEC 343 (1093)
T ss_pred ----------------------------------------------------hhhHHHHHHHhhhHHHhcCCcc-ccccc
Confidence 1258899999999999999998 99999
Q ss_pred cCcceeEEEEEeeeCCCeEEEEEeeeEec--cccccccceeeecCCCCCCCCCccccc--C-CCCCceEEEEEEEEeecc
Q 002303 815 KKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNYVCCK--N-SQLSNRYVLYAISNHYGG 889 (939)
Q Consensus 815 k~~~~AtKk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~--~-~~~~~~YdL~AVinH~G~ 889 (939)
...+.|.|.+.+.+||+||.|||+||.|+ +....|+.....|| ..|+|.+|+..+ . ....+.|+|+||..|.|.
T Consensus 344 ~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~ 422 (1093)
T KOG1863|consen 344 HGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD 422 (1093)
T ss_pred cchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhccccc
Confidence 99999999999999999999999999997 56778999999999 599999998741 1 113359999999999889
Q ss_pred CCCCeEEEEEEe-CCCCEEEEcCCcceecCccccCC----------------CceEEEEEEEecC
Q 002303 890 MGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKT----------------SAAYVLFYKRVSD 937 (939)
Q Consensus 890 l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s----------------~~AYvLFY~R~~~ 937 (939)
.++|||++|++. ..++|+.|||..|+.+++.++.. +.||+|+|-|.+.
T Consensus 423 ~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~ 487 (1093)
T KOG1863|consen 423 AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSC 487 (1093)
T ss_pred ccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCc
Confidence 999999999997 67999999999999998766531 2289999999864
No 33
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-34 Score=305.71 Aligned_cols=123 Identities=27% Similarity=0.495 Sum_probs=107.8
Q ss_pred CcCHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCc
Q 002303 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNY 866 (939)
Q Consensus 787 ~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 866 (939)
.++|++||+.|++.|. |+++|+|||||||||.++.+...|+++.|.|| ..|||++|
T Consensus 79 ~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC-CcCCchhh
Confidence 4699999999999997 99999999999999999887778999999999 69999999
Q ss_pred ccccC---------------------CCCCceEEEEEEEEeec-cCCCCeEEEEEEeC------------CCCEEEEcCC
Q 002303 867 VCCKN---------------------SQLSNRYVLYAISNHYG-GMGGGHYTAFVDLG------------HKRWFEFDDD 912 (939)
Q Consensus 867 v~~~~---------------------~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~------------~~~Wy~fnDs 912 (939)
+.... ......|+|+|||+|.| ++.+||||||+|+. +++||.|||+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~ 214 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDM 214 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCc
Confidence 86531 12457899999999999 69999999999994 3799999999
Q ss_pred cceecCcc------ccCCCceEEEEEE
Q 002303 913 RVYPVSED------NIKTSAAYVLFYK 933 (939)
Q Consensus 913 ~Vs~vs~~------~v~s~~AYvLFY~ 933 (939)
.|+.+... .+.+.+|||||||
T Consensus 215 ~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 215 ADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccccccccchhcccCCceEEEeC
Confidence 98877532 5678999999997
No 34
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-33 Score=327.83 Aligned_cols=330 Identities=27% Similarity=0.414 Sum_probs=248.6
Q ss_pred cccccccccCCCcchHH--HHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCC--CCCccchHH
Q 002303 336 LLGLTGLRNLGNTCFMN--SAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAP--GGIPVAPRM 411 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmN--SvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~--~~~~i~P~~ 411 (939)
....-|..|.+++|+-| ++.|.+..+-++++..+.... ......+....+...+..++...-.. ....+.|..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~ 305 (587)
T KOG1864|consen 229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLT---SLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTR 305 (587)
T ss_pred cccccCccccCccccccchhhHHHHHhhhhhcccccchhh---cccchhhhhHHHHHHhhhhccchhhhcccccccCcch
Confidence 35678999999999999 999999988888754332111 01111122333444444444333221 234689999
Q ss_pred HHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC--ccccCCCCCChHHHHHHHH--HhhhccCCCccccc
Q 002303 412 FKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY--LEAKDAEGQPEEEVAEEYW--RNHRARNDSIIVDL 487 (939)
Q Consensus 412 f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~--~e~~d~~~~~~~~~a~e~w--~~~~~~~~SiI~~l 487 (939)
|...+++....|..+.|||||||+.++++.++|.+.+...... .....++|..... |.-.| ..+......++..+
T Consensus 306 ~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~-~~~~~~~~~~~~~~~~~v~~l 384 (587)
T KOG1864|consen 306 FISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTS-AASWTNKGHHKSLRENWVSKL 384 (587)
T ss_pred hhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccc-cccccccccccccchhHHHHh
Confidence 9999999999999999999999999999999987765331111 1100011211111 11111 14445566789999
Q ss_pred ccEEEEeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCC
Q 002303 488 CQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN 567 (939)
Q Consensus 488 F~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~ 567 (939)
|.|++..+..|..|+.++.+.+.|.+++++++..
T Consensus 385 f~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d---------------------------------------------- 418 (587)
T KOG1864|consen 385 FQGILTNETRCLSCETITSRDEGFLDLSVAVEID---------------------------------------------- 418 (587)
T ss_pred hcCeeeeeeeeccccccccccccccccceecccc----------------------------------------------
Confidence 9999999999999999999999998888876521
Q ss_pred ccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEec
Q 002303 568 HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL 647 (939)
Q Consensus 568 ~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 647 (939)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEec
Q 002303 648 SDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLD 727 (939)
Q Consensus 648 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (939)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCC
Q 002303 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPED 807 (939)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d 807 (939)
+..++..||+.|..+|.|.+++
T Consensus 419 ----------------------------------------------------------e~~si~~~l~~~~~~e~l~g~n 440 (587)
T KOG1864|consen 419 ----------------------------------------------------------ENTSITNLLKSFSSTETLSGEN 440 (587)
T ss_pred ----------------------------------------------------------ccccHHHHHHHhcchhhccCCC
Confidence 1237889999999999999999
Q ss_pred CCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccc--cccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEE
Q 002303 808 MWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISN 885 (939)
Q Consensus 808 ~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVin 885 (939)
+++|++|...|.|.|.+.+.++|.+|+||||||+|.+. ...|+...|.||+ .|.+...+..... +...|+|+|||+
T Consensus 441 ky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~-~~~~Y~L~avVv 518 (587)
T KOG1864|consen 441 KYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNN-PDRKYDLVAVVV 518 (587)
T ss_pred cccccccCchhhHHHhccccCCcceeeeehhcccccccccccccccccccccc-ceeeccccccccC-ccceeeEEEEEE
Confidence 99999999999999999999999999999999999853 3479999999996 7888665554332 347999999999
Q ss_pred eec-cCCCCeEEEEEEeCCCCEEEEcCCcceecCccccC---CCceEEEEEEEe
Q 002303 886 HYG-GMGGGHYTAFVDLGHKRWFEFDDDRVYPVSEDNIK---TSAAYVLFYKRV 935 (939)
Q Consensus 886 H~G-~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs~~~v~---s~~AYvLFY~R~ 935 (939)
|.| ++..|||+||+|..+..|+.|||..|..++++.|. ..+.|++||.+.
T Consensus 519 H~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~ 572 (587)
T KOG1864|consen 519 HLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQ 572 (587)
T ss_pred eccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeEE
Confidence 999 99999999999984444999999999999998875 556777777654
No 35
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-32 Score=297.47 Aligned_cols=243 Identities=21% Similarity=0.222 Sum_probs=178.3
Q ss_pred CeEEEE-EccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecCcccCCCCc
Q 002303 209 NSLLVK-ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSDSVGET 287 (939)
Q Consensus 209 ~~~~~~-~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg~W~~~~~~ 287 (939)
+...+. ++..+|+..++.++..+.++++++.++.. +..++.|. -.+..+++++|..+++. |++
T Consensus 13 k~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~v-----KGg~a~dd-~~~~al~iKpn~~lmMm----------Gt~ 76 (473)
T KOG1872|consen 13 KKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMV-----KGGLAKDD-VDWGALQIKPNETLMMM----------GTA 76 (473)
T ss_pred ccccceeccCCCchHHHHHHHHHhcCCCccceeEEE-----eccccccc-ccccccccCCCCEEEee----------ccc
Confidence 334444 78899999999999999999999999874 56677665 35778899999999998 333
Q ss_pred cccccccccccccccCCcccccCCCCCCCccccCCCccccCCCCCCcccccccccccCCCcchHHHHHHHHhCChhHHHH
Q 002303 288 NDEMAEHYKIIDSICNGSVKINGSNDNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDY 367 (939)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ 367 (939)
. +.++++.....++++.+... .....+-++||.|+|||||||+.+|||-.+|+++..
T Consensus 77 e-~~~e~p~~~~~~~ed~~e~~----------------------~~~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~ 133 (473)
T KOG1872|consen 77 E-AGLEPPSLPPTFIEDSAEQF----------------------ASAALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDA 133 (473)
T ss_pred c-ccccCcccCCcchhhhhHHH----------------------HHhhccCCccccchhHHHHhhhhhhhhhcCccCcch
Confidence 2 23444443333444433221 112245678999999999999999999999999887
Q ss_pred HhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHHHhhcCCccCC------CCCCCHHHHHHHHHHH
Q 002303 368 FLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSG------YNQHDSQEFLAFLLDG 441 (939)
Q Consensus 368 ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~l~~~~p~F~~------~~QQDA~EfL~~LLd~ 441 (939)
+.. |...............+..+++.+|+.|..+ .++.|..+..++.+..|+|.- +.||||.|++..++-.
T Consensus 134 ~s~-~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~ 210 (473)
T KOG1872|consen 134 LSL-YKRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGM 210 (473)
T ss_pred hhc-cchhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhh
Confidence 643 2211111222233467889999999999766 899999999999999999985 9999999999999999
Q ss_pred HHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeEEecCCCCCeeee--ecCCeeEEeeC
Q 002303 442 LHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVT--FDPLMYLSLPI 518 (939)
Q Consensus 442 L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~s~~--~e~F~~LsL~i 518 (939)
+|+-+......+ ...+.|.++|++++..++.|.+-...... .|.|..|++-|
T Consensus 211 l~~~~~~~~~~~-------------------------~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i 264 (473)
T KOG1872|consen 211 LTEALTVATEAP-------------------------CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCII 264 (473)
T ss_pred eecccccccccc-------------------------chhHHHHHhhccccccceeeccCcccccccccccccccceEE
Confidence 997654322110 23456888999999999999887765544 66666666654
No 36
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=6.5e-30 Score=282.70 Aligned_cols=284 Identities=24% Similarity=0.370 Sum_probs=232.4
Q ss_pred cccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhc-CCCCCccchHHHHHHHhh
Q 002303 340 TGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLW-APGGIPVAPRMFKLKLAN 418 (939)
Q Consensus 340 ~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~i~P~~f~~~l~~ 418 (939)
.||.|.+++||+||+||+|+.+|++++.++.+. . -....+|+++|+-||..|. .+.+..+.+..|.++++.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~-------c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E-------CPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C-------CCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 599999999999999999999999999998664 1 1124679999999999998 777788999999999988
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeEEec
Q 002303 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (939)
Q Consensus 419 ~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C 498 (939)
......-+.|||.|+|.+|||+.|+.++............ .......+.|.++|+.......+|
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE----------------NSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc----------------cccCCCcchHHHHhCcceeeeecc
Confidence 7544555679999999999999999998765532111000 011233567999999999999999
Q ss_pred CCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeec
Q 002303 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (939)
Q Consensus 499 ~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~ 578 (939)
..|+..+++.+....+.|.-|...
T Consensus 137 ~~c~~~~~~~~~~~~~~l~yp~~~-------------------------------------------------------- 160 (295)
T PF13423_consen 137 TSCGHESVKESSTLVLDLPYPPSN-------------------------------------------------------- 160 (295)
T ss_pred cccCCeEEeecceeeeeccCCCCC--------------------------------------------------------
Confidence 999999888777655555444210
Q ss_pred ceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhHHHH
Q 002303 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (939)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 658 (939)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCC
Q 002303 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (939)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (939)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccccCcc
Q 002303 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (939)
Q Consensus 739 ~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~ 818 (939)
..+++.++|+..+..|+... ..|++|++.+
T Consensus 161 -----------------------------------------------~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~ 190 (295)
T PF13423_consen 161 -----------------------------------------------SNVTFSQVLEHSLNREQQTR---AWCEKCNKYQ 190 (295)
T ss_pred -----------------------------------------------ccchHHHHHHHHHhhccccc---cccccccccc
Confidence 12478889999998888764 7899999999
Q ss_pred eeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccC------CCCCceEEEEEEEEeec-cCC
Q 002303 819 QASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKN------SQLSNRYVLYAISNHYG-GMG 891 (939)
Q Consensus 819 ~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~------~~~~~~YdL~AVinH~G-~l~ 891 (939)
.+..+..|.+||+||.|.++|......+..|....+.+|. .+++..++.... .....+|+|.|+|+|.| +..
T Consensus 191 ~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~-~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~ 269 (295)
T PF13423_consen 191 PTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPP-SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIE 269 (295)
T ss_pred ceeeeeeccCCCcEEEEEccCCCcccccccccCCceecce-eeeccccccccccccccCCCCceEEEEEEEEEEecCCCC
Confidence 9999999999999999999999999777889999999995 799998886542 34778999999999999 699
Q ss_pred CCeEEEEEEeC---CCCEEEEcCCcc
Q 002303 892 GGHYTAFVDLG---HKRWFEFDDDRV 914 (939)
Q Consensus 892 gGHYtAy~k~~---~~~Wy~fnDs~V 914 (939)
+|||+||+|.. +.+||.|||-.|
T Consensus 270 ~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 270 SGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred CCceEEEEEcCCCCCCcEEEECcEeC
Confidence 99999999983 469999999765
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.6e-29 Score=266.29 Aligned_cols=122 Identities=25% Similarity=0.428 Sum_probs=102.4
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEeeeEec-cccccccceeeecCCCCCCCCCcccc-----cCCCCCceEEEEEEEEee
Q 002303 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFS-RYFKSKLDTYVDFPIDDLDLSNYVCC-----KNSQLSNRYVLYAISNHY 887 (939)
Q Consensus 814 Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~-----~~~~~~~~YdL~AVinH~ 887 (939)
-+..+.|++++.|.+||++|++|||||.|. .+..+|+.+.++||. .|.++.-+.. ........|+|.||+.|.
T Consensus 287 s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~-~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyht 365 (420)
T KOG1871|consen 287 SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPW-TLKISKNCFSQGLKIRILIATRPYKSLAVVYHT 365 (420)
T ss_pred CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccc-eeeechhhhccccchhhhccccccceEEEEEec
Confidence 345567899999999999999999999998 566789999999994 7877654432 222245679999999999
Q ss_pred c-cCCCCeEEEEEEe-CCCCEEEEcCCcceecCccccC----CCceEEEEEEEec
Q 002303 888 G-GMGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIK----TSAAYVLFYKRVS 936 (939)
Q Consensus 888 G-~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~----s~~AYvLFY~R~~ 936 (939)
| +..+|||++-+.. .-+.|+.+||..|..+..++|. +..||+|+|+|.+
T Consensus 366 gtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 366 GTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred ccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 9 8999999999988 6678999999999999999987 4579999999864
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.94 E-value=5.9e-27 Score=249.41 Aligned_cols=304 Identities=28% Similarity=0.438 Sum_probs=239.0
Q ss_pred CCcccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCC--Cccch
Q 002303 332 GGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGG--IPVAP 409 (939)
Q Consensus 332 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~--~~i~P 409 (939)
...+.+|.+||.|+-++=|.|++||+|++.+|+|+||+.. +|+....+.+...|+.+++++|.++. ..++|
T Consensus 127 ~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~-------~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSp 199 (442)
T KOG2026|consen 127 GSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE-------ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSP 199 (442)
T ss_pred CCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc-------ccccchhHHHHHHHHHHHHHhcChhhhcccCCH
Confidence 4567899999999999999999999999999999999742 23444568899999999999999874 67999
Q ss_pred HHHHHHHhhcC-CccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccc
Q 002303 410 RMFKLKLANFA-PQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLC 488 (939)
Q Consensus 410 ~~f~~~l~~~~-p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF 488 (939)
.+|.+++.... ..|..++|-|+-|||++||+.||.+|+..++ ..|||.+.|
T Consensus 200 he~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~----------------------------~~SIi~~~f 251 (442)
T KOG2026|consen 200 HEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK----------------------------ASSIIHKSF 251 (442)
T ss_pred HHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCC----------------------------chhHhhHhh
Confidence 99999987654 4699999999999999999999999876442 358999999
Q ss_pred cEEEEeEEecCC----CCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhc
Q 002303 489 QGQYRSMLVCPV----CNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCF 564 (939)
Q Consensus 489 ~G~~~s~i~C~~----C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~ 564 (939)
+|.++...+=.. -....+..-||++|+|+||... +
T Consensus 252 qG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~p----------------l------------------------- 290 (442)
T KOG2026|consen 252 QGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPP----------------L------------------------- 290 (442)
T ss_pred cceEEeeeeccccccccccceEEEEeeEEEEecCCCCC----------------c-------------------------
Confidence 999876554433 3345677789999999999642 0
Q ss_pred cCCccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceE
Q 002303 565 LRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLV 644 (939)
Q Consensus 565 ~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~ 644 (939)
|+|-. +
T Consensus 291 --------------------fkD~~----------------------------------e-------------------- 296 (442)
T KOG2026|consen 291 --------------------FKDVM----------------------------------E-------------------- 296 (442)
T ss_pred --------------------ccchh----------------------------------h--------------------
Confidence 00000 0
Q ss_pred EeccCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEE
Q 002303 645 GRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFY 724 (939)
Q Consensus 645 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (939)
T Consensus 297 -------------------------------------------------------------------------------- 296 (442)
T KOG2026|consen 297 -------------------------------------------------------------------------------- 296 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCC
Q 002303 725 RLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLG 804 (939)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~ 804 (939)
...+ .-+.|.+.|+.|..+-.-+
T Consensus 297 -------------------------------------------~nii--------------PQV~l~~lL~Kf~g~t~~e 319 (442)
T KOG2026|consen 297 -------------------------------------------KNII--------------PQVALFDLLKKFDGETVTE 319 (442)
T ss_pred -------------------------------------------hccc--------------ccchHHHHHHHhcCceeee
Confidence 0001 1246777777776543221
Q ss_pred CCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccc---cCCCCCceEEEE
Q 002303 805 PEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCC---KNSQLSNRYVLY 881 (939)
Q Consensus 805 ~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~---~~~~~~~~YdL~ 881 (939)
- .....| +++.+.++|++||+|+|||.-+.++.+|..|.|+||+..+|+.+.... ... .-..|+|.
T Consensus 320 ~---------~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 388 (442)
T KOG2026|consen 320 V---------VTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNH-KVTQYSLV 388 (442)
T ss_pred e---------cchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccC-ccccccch
Confidence 0 011234 889999999999999999999999999999999999888888776542 222 33779999
Q ss_pred EEEEeeccCCCCeEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEEEe
Q 002303 882 AISNHYGGMGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRV 935 (939)
Q Consensus 882 AVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~ 935 (939)
|=+.|- -..|||...+++ ..++||..+|-+|++..++-|.-+.+||-.|++.
T Consensus 389 ~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 389 ANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred hhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 988886 788999999998 7899999999999999999998889999888775
No 39
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.72 E-value=5.6e-18 Score=156.33 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=55.0
Q ss_pred EEEEEcchhHHHHHHhhccccCCcc-----CCCCCCCCChhhhhhhhhcccCCC-------CCCCcCCCCccCCCeEEcC
Q 002303 96 KVYLVPYRWWKESQILLAEKVGGVL-----YEVLSNDDNTDLEILLHLKKKEGS-------VDSDCGEGGVSVREYALVP 163 (939)
Q Consensus 96 ~~ylv~~~W~~~w~~~v~~~~~g~~-----~~~pg~IdNs~L~~~~~~~~~~~~-------~~~~lk~~l~~~~Dy~~Vp 163 (939)
.||||+++||++|+.||........ ...||||||++|+ . ..+. ....||++|.++.||++||
T Consensus 3 ~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~pGpIdN~~L~--~----~~~~~~~~~~~~~~~Lk~~l~~~~Dy~~v~ 76 (99)
T PF06337_consen 3 KWYLISSKWWRQWKSYVSYDNNDNESDPDSSPRPGPIDNSDLL--D----EDNSQLQFPPPENYRLKPNLQEGVDYELVP 76 (99)
T ss_dssp EEEEEEHHHHHHHHHHHTTTTTSTTTTT-GGG---SB-GGGGE--C----CTTT---------TEE-SS--CTTTEEEEE
T ss_pred EEEEECHHHHHHHHHHhCCCCcccccccccCCCCCCEeCHHHh--C----CCCcccccchhhhhhccccccCCCCEEEEC
Confidence 9999999999999999988765322 2239999999999 2 1111 1248999999999999999
Q ss_pred HHHHHHHHHHcCCCcce
Q 002303 164 EGMWLRALKWHNDSKAA 180 (939)
Q Consensus 164 ~~~W~~l~~wYGg~p~i 180 (939)
+++|++|.+||||||+|
T Consensus 77 ~~~W~~l~~~Ygggp~I 93 (99)
T PF06337_consen 77 EEVWDYLHSWYGGGPEI 93 (99)
T ss_dssp HHHHHHHHHHH-T----
T ss_pred HHHHHHHHHHcCCCCcE
Confidence 99999999999999999
No 40
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.67 E-value=1.9e-16 Score=142.18 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=65.6
Q ss_pred CCCCccEEEEEcchhHHHHHHhhccccCCccCCCCCCCCChhhhhhhhhcccCCCCCCCcCCCCccCCCeEEcCHHHHHH
Q 002303 90 DDDDRQKVYLVPYRWWKESQILLAEKVGGVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLR 169 (939)
Q Consensus 90 ~~~~~~~~ylv~~~W~~~w~~~v~~~~~g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~~~~Dy~~Vp~~~W~~ 169 (939)
.+|| .||+|+.+||++|+.|+... ....||||||++|+ . +.....||+++.++.||++||+++|++
T Consensus 2 ~~g~--~~yiIs~~W~~~~~~~~~~~----~~~~pGpIdN~~l~--~------~~~~~~lk~~l~~~~dy~~V~~~vW~~ 67 (86)
T smart00695 2 REGD--TWYLISTRWYRQWADFVEGK----DGKDPGPIDNSGIL--C------SHGGPRLKEHLVEGEDYVLIPEELWNK 67 (86)
T ss_pred CCCC--EEEEEeHHHHHHHHHHhCCC----CCCCCCCCCcHHhc--C------CCCCcccccccccCCCEEEeCHHHHHH
Confidence 4677 99999999999999999842 24459999999999 2 112348999999999999999999999
Q ss_pred HHHHcCCCcc-e
Q 002303 170 ALKWHNDSKA-A 180 (939)
Q Consensus 170 l~~wYGg~p~-i 180 (939)
|.+||||+|. |
T Consensus 68 l~~~YGggp~~i 79 (86)
T smart00695 68 LVSWYGGGPGPI 79 (86)
T ss_pred HHHHHCCCCccc
Confidence 9999999994 6
No 41
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=99.50 E-value=5.2e-14 Score=123.37 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=67.5
Q ss_pred EEEeeecC---CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 200 IRLSVSQE---TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 200 l~l~~~~~---~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
|++|.+.+ .+.++.+||+.+||+.+.+.+|++|+| ++++|||.+++.+..++|.+...|+++++|..||.|++|++
T Consensus 2 ~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 2 LKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred ceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 67888776 467899999999999999999999999 78899999999999999999999999999999999999999
Q ss_pred -ecCcccC
Q 002303 277 -VHGFSDS 283 (939)
Q Consensus 277 -~dg~W~~ 283 (939)
+||+||+
T Consensus 81 n~DGtWPr 88 (88)
T PF14836_consen 81 NEDGTWPR 88 (88)
T ss_dssp -TTS--TT
T ss_pred ccCCCCCC
Confidence 6999994
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.46 E-value=2.8e-13 Score=158.03 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=97.1
Q ss_pred CCCccccCcceeEEEEEeeeCCCeEEEEEeeeEec--cccc--cccceeeecCCCCCCCCCcc----------ccc----
Q 002303 809 WYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFK--SKLDTYVDFPIDDLDLSNYV----------CCK---- 870 (939)
Q Consensus 809 w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~--~~~~--~Ki~~~V~FPi~~LDls~~v----------~~~---- 870 (939)
-.|+.|++++..+.+..+-.||++|.|...-+... .+++ .|.-..|.+| +.+-|..-= ...
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCC
Confidence 46999999999999999999999999998887754 3333 3556678888 566554310 000
Q ss_pred ---CCCCCceEEEEEEEEeec-cCCCCeEEEEEEe---------CCCCEEEEcCCcceecCccccCC-----CceEEEEE
Q 002303 871 ---NSQLSNRYVLYAISNHYG-GMGGGHYTAFVDL---------GHKRWFEFDDDRVYPVSEDNIKT-----SAAYVLFY 932 (939)
Q Consensus 871 ---~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~---------~~~~Wy~fnDs~Vs~vs~~~v~s-----~~AYvLFY 932 (939)
+.+.-.+|+|-|+|.|.| +-..+|.++++|. .+++||.|||-.|+++++++.+. +-+-||+|
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 011348899999999999 7799999999997 34799999999999999988763 56889999
No 43
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=98.08 E-value=2.5e-05 Score=82.31 Aligned_cols=144 Identities=24% Similarity=0.339 Sum_probs=89.4
Q ss_pred CCeeEEeeCCCC---CccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCC--ccceeeeEeecceeeee
Q 002303 510 PLMYLSLPIPST---TMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN--HEKLLVAEIYRSKIFRV 584 (939)
Q Consensus 510 ~F~~LsL~iP~~---~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~--~~~l~~~e~~~~~~~~~ 584 (939)
++.+--|+||.. +.+.+.|+++..... .--.+.+.+||+|++.||++++.+..+++. ..+|.+.++++++|++.
T Consensus 2 ~l~YevL~i~l~ElE~kk~~kv~w~~~~~~-~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~ 80 (213)
T PF14533_consen 2 TLYYEVLDIPLKELENKKQFKVTWLNDGLK-EEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKI 80 (213)
T ss_dssp EEEEEE-SS-HHHHHSB--EEEEEE-TTS--EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEE
T ss_pred ceEEEecCCCHHHHhCceEEEEEEECCCCc-ceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEee
Confidence 345555666654 456777777754432 224688999999999999999999998865 36899999999999999
Q ss_pred ccCCccccccccCCCcEEEEEcCCCC-----C--CCceEEEeeecccccccccccccceeeeccceEEeccCCCChhHHH
Q 002303 585 LDEPSDLLGLIRDEDKLVAYRLPKDS-----E--TPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIR 657 (939)
Q Consensus 585 ~~~~~~~~~~i~~~d~i~~yel~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~ 657 (939)
+. ++..+..|.+...+++-++|... + ...++++.|.-.+ ....||+||++.+.+.-+-.++.
T Consensus 81 ~~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~----------~~~~hGiPF~f~v~~gE~f~~tK 149 (213)
T PF14533_consen 81 LS-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHKD----------PSRTHGIPFLFVVKPGETFSDTK 149 (213)
T ss_dssp E--TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESSS----------TT-EEEEEEEEEEETT--HHHHH
T ss_pred cC-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEecC----------ccccCCCCEEEEeeCCCcHHHHH
Confidence 99 78888888666667788888643 1 2356777775322 22789999999997777778888
Q ss_pred HHHHHhcC
Q 002303 658 KLFLKLLD 665 (939)
Q Consensus 658 ~~~~~~l~ 665 (939)
+.+.+++.
T Consensus 150 ~Rl~~rlg 157 (213)
T PF14533_consen 150 ERLQKRLG 157 (213)
T ss_dssp HHHHHHH-
T ss_pred HHHHHHhC
Confidence 77777663
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0018 Score=77.48 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=58.5
Q ss_pred cccCCCcchHHHHHHHHhCChhHHHHHhhhcc----------cccccCCCCCCchHHHHHHHHHHHHhcCCCCCcc--ch
Q 002303 342 LRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQ----------KEINYENPLGLNGELALAFGDLLRKLWAPGGIPV--AP 409 (939)
Q Consensus 342 L~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~----------~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i--~P 409 (939)
|.|.|||||.||+||||.++|+|+.-+...+. ...+.....-.......+....+... ......+ +-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 99999999999999999999999987764321 11111111111111122222222222 1111122 22
Q ss_pred HHHHHHH---hhcCCccCCCCCCCHHHHHHHHHHHHHHHh
Q 002303 410 RMFKLKL---ANFAPQFSGYNQHDSQEFLAFLLDGLHEDL 446 (939)
Q Consensus 410 ~~f~~~l---~~~~p~F~~~~QQDA~EfL~~LLd~L~eel 446 (939)
..+...+ .+....|....|+||++++.-++-.+.+-+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 2333322 233345778899999999998887776544
No 45
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=96.66 E-value=0.0057 Score=52.73 Aligned_cols=62 Identities=8% Similarity=-0.024 Sum_probs=53.2
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
.+....+.++..+||.+|+.++...+++|++++|||. ....|.|...+++++++.++..|++
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~-----~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY-----NGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE-----CCeEccCCcccHHHcCCCCCCEEEE
Confidence 4567889999999999999999999999999999994 3445777657899999999988876
No 46
>PTZ00044 ubiquitin; Provisional
Probab=96.45 E-value=0.013 Score=50.99 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=55.5
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++...++.++..+|+.+|+.++....++|++++||+ +. ...|.| +.++.+.++..+..|.+-++
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~----g~~L~d-~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YS----GKQMSD-DLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-EC----CEEccC-CCcHHHcCCCCCCEEEEEEE
Confidence 4567788999999999999999999999999999999 53 344665 47899999999998888776
No 47
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=96.41 E-value=0.013 Score=50.92 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=55.1
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++...++.++..+|+.+|+++++..++++++++||+ + ....|.|. .+|.++++..+..|.+-++
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~----~G~~L~d~-~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL-F----KGKALADD-KRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-E----CCEECCCC-CCHHHCCCCCCCEEEEEEc
Confidence 3566788999999999999999999999999999998 4 34557664 8999999999998877654
No 48
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=96.22 E-value=0.014 Score=49.93 Aligned_cols=61 Identities=20% Similarity=-0.000 Sum_probs=51.6
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
+....+.++..+|+.+|+.++...++++++++||+. . ...|.| +.+|.++++.+|..|.+.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~----g~~l~d-~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF-K----GKERDD-AETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee-C----CcccCc-cCcHHHcCCCCCCEEEEe
Confidence 556788999999999999999999999999999983 2 234555 478999999999988876
No 49
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=96.14 E-value=0.0043 Score=65.19 Aligned_cols=81 Identities=20% Similarity=0.415 Sum_probs=59.1
Q ss_pred CCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeecc
Q 002303 810 YCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGG 889 (939)
Q Consensus 810 ~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~ 889 (939)
-|.+|+.+. -.++|.+.++|+|+.+|+- .+- |-. |+..|--.- +...|..-+||--.-.
T Consensus 172 pCn~C~~ks-Q~rkMvlekv~~vfmLHFV-----eGL----------P~n--dl~~ysF~f---eg~~Y~Vt~VIQY~~~ 230 (275)
T PF15499_consen 172 PCNSCNSKS-QRRKMVLEKVPPVFMLHFV-----EGL----------PHN--DLQHYSFHF---EGCLYQVTSVIQYQAN 230 (275)
T ss_pred CCcccCChH-HhHhhhhhcCchhhhhhhh-----ccC----------Ccc--CCCccceee---cCeeEEEEEEEEEecc
Confidence 499998774 4678999999999999943 122 211 222221111 5578999999977644
Q ss_pred CCCCeEEEEEEeCCCCEEEEcCCc
Q 002303 890 MGGGHYTAFVDLGHKRWFEFDDDR 913 (939)
Q Consensus 890 l~gGHYtAy~k~~~~~Wy~fnDs~ 913 (939)
.-|+++++++.+|.|..+||-.
T Consensus 231 --~~HFvtWi~~~dGsWLecDDLk 252 (275)
T PF15499_consen 231 --LNHFVTWIRDSDGSWLECDDLK 252 (275)
T ss_pred --CceeEEEEEcCCCCeEeeccCC
Confidence 5799999999899999999965
No 50
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=96.08 E-value=0.018 Score=50.06 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=53.0
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
......+.+...+|+.+|++++.+.+++|+++++|.... -...++.| +.+|.++++.+|+.|++.
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~--~~Gk~l~D-~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLK--VKGKPAED-DVKISALKLKPNTKIMMM 72 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeec--ccCCcCCC-CcCHHHcCCCCCCEEEEE
Confidence 445678899999999999999999999999999998510 02335666 488999999999998875
No 51
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.06 E-value=0.028 Score=48.78 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=56.0
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
..++...++.++..+||.+|++++....++|.+++||+ + ....|.|. .+|.++++.++..+.+..+
T Consensus 5 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~----~G~~L~D~-~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 5 NDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-F----EGRPMEDE-HPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-E----CCEECCCC-CCHHHcCCCCCCEEEEEEE
Confidence 34566788999999999999999999999999999998 3 34557664 7899999999999888766
No 52
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=96.00 E-value=0.015 Score=52.24 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=54.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+++.++..+|+.+|+.++.+.|++++++++||.. +. .|.|...||.+.++.++..|++-+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-G~----~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-GK----ILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec-Cc----eeccCCccHHhcCCCCCCEEEEEec
Confidence 57788999999999999999999999999999954 33 6888889999999999999988753
No 53
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=95.99 E-value=0.034 Score=48.14 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=54.5
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++....+.++...|+.+|++++....++|++++||+ +. ...|.| +.+|.++++..|..|-+-.+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~----g~~L~d-~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS----GKQMND-DKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-EC----CeEccC-CCCHHHcCCCCCCEEEEEEE
Confidence 3456678899999999999999999999999999999 53 345655 47899999999998887765
No 54
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=95.99 E-value=0.027 Score=48.36 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=53.0
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
..+...++.++..+||.+++.++....++|++++||| + ....|+|. .++.++++..+..|-+-
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li-~----~G~~L~D~-~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF-F----SGKLLTDK-TRLQETKIQKDYVVQVI 68 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-E----CCeECCCC-CCHHHcCCCCCCEEEEE
Confidence 3467788999999999999999999999999999998 4 44567764 78999999988877654
No 55
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=95.98 E-value=0.043 Score=49.23 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=53.9
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEee--cCCccccccccccccccccccCCCceEEEE
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDF--SGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~--~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
......|++..|+.+|+.++-.++|++++.+||-.+ .+......+.+..++|...++.+|..|.+.
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 478899999999999999999999999999999866 233444556777899999999999888776
No 56
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=95.88 E-value=0.039 Score=46.94 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=53.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
++..+.+.++..+|+.+|++++....++|+++++|.. ....|.| +.+|.++++.+|..|.+-++
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~-----~G~~L~d-~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY-----NGKELDD-DKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE-----TTEEEST-TSBTGGGTTSTTEEEEEEES
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceeee-----eeecccC-cCcHHHcCCCCCCEEEEEEe
Confidence 3457889999999999999999999999999999973 4455655 58999999999998877654
No 57
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=95.75 E-value=0.043 Score=47.54 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=55.3
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.++....+.++..+|+.+|++++.+.+++|++++||| +. ...|.|. .+|.++++..+..|.+-.+.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~----g~~L~d~-~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLEDG-RTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-EC----CEECCCC-CcHHHcCCCCCCEEEEEEEc
Confidence 3456678999999999999999999999999999999 42 3356664 78999999999998888763
No 58
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=95.63 E-value=0.045 Score=46.84 Aligned_cols=63 Identities=8% Similarity=0.044 Sum_probs=52.9
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
.++...++.+...+|+.++++++....++|.+++||+ + ....|.|. .++.++++..+..+-+-
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~----~G~~L~d~-~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-F----AGKELRNT-TTIQECDLGQQSILHAV 68 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-E----CCeECCCC-CcHHHcCCCCCCEEEEE
Confidence 3566788999999999999999999999999999998 4 34457664 88999999999887653
No 59
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=95.63 E-value=0.037 Score=48.23 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=48.9
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccC-CCceEEEE
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK-PGEEVFLQ 274 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~-~~q~IllE 274 (939)
+...++.++..+||.+||.++...+++|++.+|| +.+. .|.+...+|.++++. .|..+.+-
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G~----~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIGQ----RLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcCC----eeCCCcCCHHHcCCCCCCCEEEEE
Confidence 4567899999999999999999999999999999 4322 255456899999998 56776653
No 60
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=95.56 E-value=0.043 Score=47.92 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
+..+++.++..+||.+|+.++....++|+++++|+ +. ...|+|. .+|.++++.++..|.+-.+.
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~-~~----G~~L~d~-~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ-YE----GIFIKDS-NSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-EC----CEEcCCC-CcHHHcCCCCCCEEEEEEec
Confidence 35677889999999999999999999999999999 43 2457664 79999999999999888773
No 61
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=95.55 E-value=0.062 Score=46.80 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCC--CccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFIS--VSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i--~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+...++.++..+|+.+|++++....++ +++++||+. ....|.|. .+|.++++..|..|++.++
T Consensus 9 ~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~-----~G~~L~d~-~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 9 KQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY-----SGKILKDD-TTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE-----CCEEccCC-CCHHHcCCCCCCEEEEEEe
Confidence 4567789999999999999999999999 899999983 34567664 7899999999998887754
No 62
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=95.54 E-value=0.044 Score=47.53 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=53.0
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
...++.+...+||.+++.++....++|++++||+. ....|.|. .+|.+++++.+..+-+-++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~-----~Gk~L~D~-~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL-----AGVPLEDD-ATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE-----CCeECCCC-CCHHHcCCCCCCEEEEEEe
Confidence 46788999999999999999999999999999993 34457765 8899999999988877665
No 63
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=95.47 E-value=0.085 Score=48.98 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=56.0
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
..+...++.++..+||.+|+.++.+..+++.+++||+ + ....|+|. .+|.+.++..+..|-+.++.
T Consensus 35 l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~----~Gk~L~D~-~tL~dy~I~~~stL~l~~~l 100 (103)
T cd01802 35 LTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI-W----NNMELEDE-YCLNDYNISEGCTLKLVLAM 100 (103)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-E----CCEECCCC-CcHHHcCCCCCCEEEEEEec
Confidence 3456788999999999999999999999999999998 3 34557665 78999999999998887763
No 64
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=95.40 E-value=0.067 Score=47.20 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=53.8
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++...++.+...+|+.+|++++.+.++++.+++||-..+ ....|.|. .+|.++++.+|..|.+-++
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~---~G~~L~D~-~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD---SREVLQDG-VPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc---CCCCCCCC-CCHHHcCCCCCCEEEEEEE
Confidence 3456677889999999999999999999999999993222 33467664 6899999999998877754
No 65
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=95.33 E-value=0.07 Score=46.91 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=52.0
Q ss_pred EEEE-EccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeec
Q 002303 211 LLVK-ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (939)
Q Consensus 211 ~~~~-~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~d 278 (939)
.++. +...+||.+|++++.+..++|++++||+. ....|+| +.+|.+.++..+..|.+.++.|
T Consensus 14 ~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~-----~Gk~L~D-~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 14 RTVDSLSRLTKVEELREKIQELFNVEPECQRLFY-----RGKQMED-GHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred EEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe-----CCEECCC-CCCHHHcCCCCCCEEEEEEecC
Confidence 4563 67899999999999999999999999993 3455766 4789999999999999987743
No 66
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=95.26 E-value=0.078 Score=45.37 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=52.8
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
.++...++.++..+|+.+|++++....+++++.+||+. ....|.| +.+|.++++.+|..+.+-
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-----~g~~L~d-~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY-----SGRVLKD-DETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-----CCEECCC-cCcHHHCCCCCCCEEEEE
Confidence 44567889999999999999999999999999999994 2346666 478999999999887654
No 67
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.23 E-value=0.11 Score=45.62 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=51.8
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+...++.++..+|+.+|++++.+.++++++++||- +. ...|.|. +|.++++.++..|.+-..
T Consensus 10 ~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~-~~----Gk~L~d~--~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 10 TGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL-HR----ETRLSSG--KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE-EC----CcCCCCC--cHHHcCCCCCCEEEEEee
Confidence 345688999999999999999999999999999986 32 3457664 799999999998877643
No 68
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=94.52 E-value=0.15 Score=43.84 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=48.4
Q ss_pred EEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 211 LLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 211 ~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
.++.+...+|+.+|++++.+..+++.+++||+. ....|.|. .+|.++++.++..|.+-
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~-----~Gk~L~d~-~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF-----AGKILKDT-DTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE-----CCeEcCCC-CcHHHcCCCCCCEEEEE
Confidence 478899999999999999999999999999973 33456664 78999999998887654
No 69
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=94.40 E-value=0.17 Score=43.93 Aligned_cols=62 Identities=18% Similarity=0.087 Sum_probs=51.8
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
.+....+.++..+||.+|++++-+.++++++++||- +. ...|.|. .+|.++++.+|..|.+-
T Consensus 10 ~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi-~~----Gk~L~D~-~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK-KW----YTIFKDH-ISLGDYEIHDGMNLELY 71 (73)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-eC----CcCCCCC-CCHHHcCCCCCCEEEEE
Confidence 356777899999999999999999999999999996 32 3467664 78999999999888764
No 70
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=94.36 E-value=0.28 Score=43.79 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=53.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccc-cccccccccccccccCCCceEEEE
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQ-FLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~-~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
......++...|+.+|++++...+|+++..+||..+.+.... ..|.++.++|...++.+|..|.+.
T Consensus 13 ~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 13 FSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 345677999999999999999999999999999766554222 236566789999999999988876
No 71
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=94.35 E-value=0.29 Score=43.91 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=54.6
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++..+++.+++.+++..|++..|+..+++.+++|++. ....|.+ +.|+.++++..+..|-+-++
T Consensus 19 ~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f-----~G~~L~~-~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 19 QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF-----DGQRIRD-NQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE-----CCeECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 35677899999999999999999999999999999984 3344655 47999999999998876654
No 72
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=93.12 E-value=0.36 Score=40.53 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=49.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
++....+.+....|+.+|++++.+.+++++++++|+. . ...|++ ..++.++++.++..|.+-
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~-~----g~~l~d-~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY-A----GKILKD-DKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-C----CcCCCC-cCCHHHCCCCCCCEEEEE
Confidence 3556678888999999999999999999999999963 2 234655 478999999988887764
No 73
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=92.45 E-value=0.36 Score=39.92 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=44.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCC
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPG 268 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~ 268 (939)
....+.++...|+.+|+.++...++++++++||+. . ...|.+ +.+|.++++.+|
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~-~----g~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY-K----GKVLED-DRTLADYNIQDG 63 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-C----CEECCC-CCCHHHcCCcCC
Confidence 46778899999999999999999999999999973 2 234666 478999998765
No 74
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=91.88 E-value=1 Score=39.69 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=53.0
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccc-eEEEeecCCccccccccc-cccccccccCCCceEEEE
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEM-LYIWDFSGQTTQFLMNDR-VTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~-~RLW~~~~~~~~~lL~d~-~~tL~d~~l~~~q~IllE 274 (939)
.+|+..+...|...+|+.+|...+......+... ++|..-+- ...+.+. +++|.++++..+..|++|
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~P---r~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFP---RRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSS---TEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCC---CcCCCccccccHHHhcCCCCeEEEEE
Confidence 4888899999999999999999998887777654 88875432 2233333 489999999999999987
No 75
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=91.75 E-value=0.55 Score=41.50 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=38.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCcccccc-ccccccccccccCCCceEEEE
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLM-NDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL-~d~~~tL~d~~l~~~q~IllE 274 (939)
-...+.++..+|+.+|++++.+.++++.+.+.|.. +.+....+ .+..++|.+++|..|..|.+.
T Consensus 14 G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~--~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 14 GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSK--DRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BS--SGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEe--cCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 34667899999999999999999999988877753 23333344 456799999999999988764
No 76
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=91.61 E-value=0.72 Score=42.88 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=55.2
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCcccccccccccccccccc-------CCCceEEEEEe-e
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSA-------KPGEEVFLQLQ-V 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l-------~~~q~IllE~k-~ 277 (939)
++...+........|+-+|++.+--+.+.|+++.||| . ...+|+| ++||.|+|+ +....+-+-++ .
T Consensus 9 R~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-k----d~qvLeD-~kTL~d~g~t~~~akaq~pA~vgLa~r~~ 82 (119)
T cd01788 9 RHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-K----DDQLLDD-GKTLGDCGFTSQTARPQAPATVGLAFRSS 82 (119)
T ss_pred ecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-c----Cceeecc-cccHHHcCccccccccCCCCeEEEEEecC
Confidence 3444566677789999999999999999999999999 3 2356766 589999999 55667777777 4
Q ss_pred cCccc
Q 002303 278 HGFSD 282 (939)
Q Consensus 278 dg~W~ 282 (939)
+|.+.
T Consensus 83 d~~fE 87 (119)
T cd01788 83 DDTFE 87 (119)
T ss_pred CCCcc
Confidence 56654
No 77
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=91.04 E-value=0.95 Score=38.74 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=49.5
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCc-cceEEEeecCCccccccccccccccccccCCCceEE
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVS-EMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVF 272 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~-e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Il 272 (939)
..++....+.+.+..++..|.+..|+..+++. +.++++ + .+..|.. ++|+.++++..|..|-
T Consensus 7 ~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~-f----dG~~L~~-~~T~~~~~ied~d~Id 69 (72)
T PF11976_consen 7 SQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI-F----DGKRLDP-NDTPEDLGIEDGDTID 69 (72)
T ss_dssp ETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE-E----TTEEE-T-TSCHHHHT-STTEEEE
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE-E----CCEEcCC-CCCHHHCCCCCCCEEE
Confidence 34566788999999999999999999999999 899998 4 3344544 5899999999887754
No 78
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.68 E-value=0.86 Score=52.19 Aligned_cols=65 Identities=6% Similarity=0.098 Sum_probs=55.5
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcC---CCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFI---SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~---i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++..+.+.++..+||.+||+++....+ ++.+++||+ | ...+|+|. ++|.++++..+..|++.+.
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y----~GkiL~Dd-~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI-Y----SGKILSDD-KTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE-E----CCEECCCC-CcHHHcCCCCCCEEEEEec
Confidence 3456788999999999999999999998 999999998 4 35567765 7899999999999988876
No 79
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=89.54 E-value=1.7 Score=38.16 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=51.4
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccc--cccccccccccCCCceEEEE
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE 274 (939)
.+|+..+...|+..+|+.+|.+.+....+.+...++|..-.. ...+. |.++||.++++..+..+++|
T Consensus 11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~P---rk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFP---RRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCC---CcCCccccccCCHHHCCCCCceEEEEe
Confidence 488888999999999999999999766666666777764332 22333 33689999999999898887
No 80
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=85.30 E-value=5.4 Score=34.71 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=47.9
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccc--cccccccccccCCCceEEEE
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE 274 (939)
.+|+..+...|+..+|+.+|.+.+.....- ...++|+.-.-. ..+. +.++||.++||. +..++++
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr---~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPR---RVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCC---ccCCCCCccCcHHHcCCc-cceEEEE
Confidence 478888999999999999999999765433 466788754322 2233 367999999999 5566655
No 81
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.27 E-value=5.3 Score=35.30 Aligned_cols=70 Identities=9% Similarity=-0.088 Sum_probs=52.4
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+++......|...+++.+|...+... +.+.+.++|..-+-..... -.+.+.||.++||.....++||.+
T Consensus 11 lP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~-~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 11 TPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLT-QLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCc-CCCCCCcHHHcCCCCCcEEEEEcC
Confidence 588888999999999999999999654 5566677776433222211 125568999999999999999853
No 82
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=84.72 E-value=5.1 Score=35.85 Aligned_cols=69 Identities=9% Similarity=-0.034 Sum_probs=48.6
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCcccccc----ccccccccccccCCCceEEEE
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLM----NDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL----~d~~~tL~d~~l~~~q~IllE 274 (939)
.+++..+...|...+|+.+|...+... +-.++.+.|..-+-......+ .+...||+++||.....++++
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 478888999999999999999999543 334466777532211111111 245689999999988888877
No 83
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=83.90 E-value=7.8 Score=34.41 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=53.5
Q ss_pred eecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 204 VSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 204 ~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+.+++..+...|...+++.+|...+-. .+.+.+++.|..-.-...... .+.+.||+++||....+++||.+
T Consensus 11 RlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~-~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 11 RYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSH-LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCC-cccCCCHHHcCCCCCcEEEEecC
Confidence 358889999999999999999998866 466778888874332222222 34458999999999999999854
No 84
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=78.31 E-value=11 Score=33.19 Aligned_cols=66 Identities=5% Similarity=-0.082 Sum_probs=47.9
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccc--cccccccccccCCCceEEEE
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE 274 (939)
.+|+..+...|+..+++.+|.+.+....+-. ..+.|-.-. +...+. +.++||.+++|.+...++++
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~f---Prk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPF---PRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCC---CCeECCcccccCCHHHCCCCCceEEEEe
Confidence 4788889999999999999999998654332 445554322 122232 45689999999988888876
No 85
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=78.01 E-value=1.2 Score=44.94 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=16.6
Q ss_pred cccccccccCCCcchHHHHHHHHhC
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLAH 360 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~ 360 (939)
...++|+.|.+|||.+||++|.+..
T Consensus 30 ~~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 30 KMEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp --EEE----SSSTHHHHHHHHHHHH
T ss_pred ceEEecCCCCCCChHHHHHHHHHHH
Confidence 4567799999999999999998743
No 86
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=76.83 E-value=4.2 Score=36.55 Aligned_cols=56 Identities=7% Similarity=0.138 Sum_probs=43.7
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccC
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK 266 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~ 266 (939)
....+.+.....+|+-+|+.++--+..=|.++.|||.... ..+|.| .++|.++|+.
T Consensus 10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~---eqlL~D-~ktL~d~gft 65 (110)
T KOG4495|consen 10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDT---EQLLDD-GKTLGDCGFT 65 (110)
T ss_pred cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCH---HHHhhc-cchhhhcccc
Confidence 3445666777889999999999999999999999997642 256655 5899999865
No 87
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=75.16 E-value=3.2 Score=42.00 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=26.3
Q ss_pred Eeec--cCCCCeEEEEEEeCCCCEEEEcCCcceecCcc
Q 002303 885 NHYG--GMGGGHYTAFVDLGHKRWFEFDDDRVYPVSED 920 (939)
Q Consensus 885 nH~G--~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs~~ 920 (939)
.|.| --|.||-++|++. .+.||.+||.++.+-+++
T Consensus 129 f~agi~~~g~~Havfa~~t-s~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 129 FHAGIFLKGQEHAVFACVT-SDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp EEEEEEEESTTEEEEEEEE-TTCEEEEETTEEEE----
T ss_pred hhhHheecCCcceEEEEEe-eCcEEEecCCeeeeCCCC
Confidence 4666 4678999999986 678999999999988764
No 88
>PLN02560 enoyl-CoA reductase
Probab=74.83 E-value=9.6 Score=42.58 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=47.2
Q ss_pred EEEEccCCCHHHHHHHHHHHcCC-CccceEEEeec--CCccccccccccccccccccCCCceEEEE
Q 002303 212 LVKISLEDNKVDLYKRACNLFIS-VSEMLYIWDFS--GQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 212 ~~~~Sk~~ti~eL~~~v~~lf~i-~~e~~RLW~~~--~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
++.++..+|+++|++.+-+..++ +++++||+... ++.....|+| +++|.+.++.++.++.+-
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d-~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDD-SKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCC-CCCHHhcCCCCCceEEEE
Confidence 68889999999999999999886 78999999432 2223335555 468999999988875554
No 89
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=74.39 E-value=5.6 Score=34.64 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=41.2
Q ss_pred cCCCHHHHHHHHHHHcC--CC-ccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 217 LEDNKVDLYKRACNLFI--SV-SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 217 k~~ti~eL~~~v~~lf~--i~-~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
..+||.+|++++.+.++ ++ ++++||- | ....|+|. .+|.++++..+..|.+-
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y----~GKiL~D~-~TL~dygI~~gstlhLv 73 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-H----CGRKLKDD-QTLDFYGIQSGSTIHIL 73 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-e----CCcCCCCC-CcHHHcCCCCCCEEEEE
Confidence 46899999999999974 64 8889986 4 33457664 89999999999887654
No 90
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=72.37 E-value=28 Score=29.95 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=44.1
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+|++...+.+....|+.++...+|+..++.++.+.+.... ..+..-++.+ +..-.++.+.+|.+
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~-~~k~l~~~~d------~~~L~~~El~ve~~ 71 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG-EKKPLDWDQD------SSSLPGEELRVEKR 71 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE-EEEEE-TTSB------GGGGTTSEEEEEES
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC-CCccccCCCc------eeeecCCEEEEEeC
Confidence 38888899999999999999999999999999998887442 1122222222 22334688888853
No 91
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=71.72 E-value=9.2 Score=44.54 Aligned_cols=62 Identities=13% Similarity=0.277 Sum_probs=53.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+...+.+....+|.+||+.+...|+++.++++|- | ...+|+|. +||...++.+|-+|=+-++
T Consensus 25 dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI-f----aGrILKD~-dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 25 DKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI-Y----AGRILKDD-DTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred cceeEecccchHHHHHHHHHHHhcCCChhHeeee-e----cCccccCh-hhHHHcCCCCCcEEEEEec
Confidence 3789999999999999999999999999999886 3 56678875 8899999999988766554
No 92
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=71.26 E-value=15 Score=32.41 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=45.1
Q ss_pred eEEEEeeecCCCe--EEEEEccCCCHHHHHHHHHHHcC--CCccceEEEeecCCccccccccccccccccc--cCCCceE
Q 002303 198 LQIRLSVSQETNS--LLVKISLEDNKVDLYKRACNLFI--SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFS--AKPGEEV 271 (939)
Q Consensus 198 l~l~l~~~~~~~~--~~~~~Sk~~ti~eL~~~v~~lf~--i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~--l~~~q~I 271 (939)
+.|.+ +..++.. +++.+...+||.+|++++.+.++ .+++++||- | .+.+|+|. .+|.+.. +..+..|
T Consensus 2 i~l~I-K~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI-y----~GKiLkD~-~tL~~~~~~~~~~~ti 74 (79)
T cd01790 2 VTLLI-KSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI-Y----SGKLLPDH-LKLRDVLRKQDEYHMV 74 (79)
T ss_pred eEEEE-ECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEE-E----cCeeccch-hhHHHHhhcccCCceE
Confidence 34443 2344444 45555889999999999998874 446889986 4 45577765 7888885 5555443
No 93
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=70.07 E-value=26 Score=30.83 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=44.5
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCC-ccceEEEeecCCccccccccccccccccccCCC
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISV-SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPG 268 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~-~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~ 268 (939)
.+|+..++..|...+||.+|++.+.....-+ ...+.|..-. ....+.+.++||+|++|...
T Consensus 11 lpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~f---P~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 11 LADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAF---PVKELSDESLTLKEANLLNA 72 (79)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCC---CCcccCCCCCcHHHCCCcCc
Confidence 4788889999999999999999998765432 3456676322 12234455899999999843
No 94
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=69.95 E-value=12 Score=31.64 Aligned_cols=60 Identities=10% Similarity=-0.010 Sum_probs=33.8
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceE
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEV 271 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~I 271 (939)
++....++.+++..++.++.+.+|+.|++++++..|-.- ...+ |.+..+.-++|-.|..+
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~-----~k~l-dlslp~R~snL~n~akL 63 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHN-----NKPL-DLSLPFRLSNLPNNAKL 63 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEET-----TEEE-SSS-BHHHH---SS-EE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEEC-----CEEe-ccccceeecCCCCCCEE
Confidence 556678899999999999999999999999887655421 1122 34455556666666554
No 95
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=69.31 E-value=4.2 Score=33.82 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=28.1
Q ss_pred CCCCCccccCcceeEEEEEee--eCCCeEEEEEeeeEe
Q 002303 807 DMWYCPRCKKHWQASKKLDLW--RSPDILVIHLKRFSF 842 (939)
Q Consensus 807 d~w~C~~Ck~~~~AtKk~~i~--~lP~iLiIhLKRF~~ 842 (939)
++|.||+|..+.--.|.+..- .+-+++=|++++|-.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 568899999887666666553 677888899999864
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=67.60 E-value=17 Score=28.35 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=43.6
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
+.....+.++...|+.++++.++..++++++.++|+.. ...+.+. ..+.+..+..+..|.+.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~-----~~~~~~~-~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVN-----GKILPDS-LTLEDYGLQDGDELVLV 67 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEEC-----CeECCCC-CcHHHcCCCCCCEEEEE
Confidence 45667788889999999999999999999999999742 2223222 22345566666666553
No 97
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=63.73 E-value=17 Score=31.61 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=40.8
Q ss_pred ccCCCHHHHHHHHHHHcC-CCccceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 216 SLEDNKVDLYKRACNLFI-SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 216 Sk~~ti~eL~~~v~~lf~-i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
+...|+.+|++.+-+..+ ++++++||+... ....|.+. .+|.+.++.+|..|.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g~~L~d~-~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KGKSLKDD-DTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CCcccCCc-ccHhhcCCCCCCEEEE
Confidence 467899999999988876 578999998432 44456554 5799999988877654
No 98
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=63.46 E-value=29 Score=30.00 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=48.0
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
.+|++...+.+-...|+.++.+.+|+..++.++.+.+....+.. ...+ +. -+++....++.|.+|.
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~-~~~~-~~---~~d~~~L~~~El~Ve~ 71 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDE-KKPL-DL---DTDSSSLAGEELEVEP 71 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCC-cCCc-Cc---hhhhhhhcCCEEEEEe
Confidence 47888899999999999999999999999999998887653322 0111 11 1234455677888774
No 99
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=61.22 E-value=45 Score=28.92 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=49.7
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+|++...+.+....|++++..++|+.-++..+.+.++.. +..+..-++. |+.+-.|+.+.+|-+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~-g~~k~l~~~q------D~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLV-GGDKPLVLDQ------DSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEe-cCCcccccCC------ccceeeccEEEEEEe
Confidence 4788888999999999999999999999999999988866 3322222222 344456889999855
No 100
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=59.62 E-value=47 Score=29.50 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=39.9
Q ss_pred cceEEEecCCcchHHHHHHHhhhhccCCccceeeeE-eecceeeeeccCCcccccc--ccCCCcEEE
Q 002303 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE-IYRSKIFRVLDEPSDLLGL--IRDEDKLVA 603 (939)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e-~~~~~~~~~~~~~~~~~~~--i~~~d~i~~ 603 (939)
...++++++..++.+|+..|...+|++...+-+... -........+.|....|.. +.++..|.+
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 346789999999999999999999998766554432 2233444444444445543 444444443
No 101
>smart00455 RBD Raf-like Ras-binding domain.
Probab=58.26 E-value=44 Score=28.69 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=46.8
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
.+|+....+.+-...|+.|+...+|+..++.++.+.+... +.++..-++. ++..-.++.+.+|.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~-g~~k~ldl~~------~~~~l~~~el~ve~ 69 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR-GEKKPLDLNQ------PISSLDGQELVVEE 69 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc-CCCcceecCC------ccccccCceEEEEe
Confidence 4788889999999999999999999999999998877743 2222222222 23334578888874
No 102
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=57.10 E-value=6.9 Score=49.86 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=87.9
Q ss_pred CcCHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCc
Q 002303 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNY 866 (939)
Q Consensus 787 ~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 866 (939)
.-.+.+|+..|+....+..+...-|+.|.....-. ...-. .+++|+..|+........+....+.+++.++.+-.+
T Consensus 481 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 481 VEILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQG--SIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred ceeccchhhhhhccCccccccccCCcceEEeeccc--ccccc--cceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence 45688999999998876667777777776543221 11111 168888888886655556777889999888888776
Q ss_pred ccccCCCCCceEEEEEEEEeeccCCCCeEEEEEEeCCCCEEEEcCCcceecC
Q 002303 867 VCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWFEFDDDRVYPVS 918 (939)
Q Consensus 867 v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs 918 (939)
+... .....++|..+++|.++...||+ ..+.|+..++..+..+.
T Consensus 557 ~~~~--~~~t~~~l~~~~~~~~s~~~~~~------~~~v~~~~~~~~~~~~~ 600 (842)
T KOG1870|consen 557 VLSG--AQSTEEDLLSVICHRTSRYSREP------PLNVGYGVDDQSLKEVS 600 (842)
T ss_pred ccCC--CcccccchhhHHhhcccccCCcC------ccccccCCCcccccccc
Confidence 6653 25678999999999998888888 46789999998888765
No 103
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=49.79 E-value=13 Score=23.17 Aligned_cols=15 Identities=33% Similarity=0.851 Sum_probs=11.1
Q ss_pred EEEEeCCCCEEEEcCC
Q 002303 897 AFVDLGHKRWFEFDDD 912 (939)
Q Consensus 897 Ay~k~~~~~Wy~fnDs 912 (939)
.+++. +++||+|+++
T Consensus 2 ~W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEEE-TTEEEEETTT
T ss_pred cCEEE-CCEEEEeCCC
Confidence 35554 6899999875
No 104
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=49.47 E-value=55 Score=28.59 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=41.5
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccc---eEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEM---LYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~---~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
...+.+.+-..-++.+|...+...++.+..+ ..-|... ......|.. +.+|.++++.+|..+.+
T Consensus 12 ~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~-~~~g~~L~~-~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 12 GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA-RAGGRPLDP-DQTLADAGVRDGDVLVL 78 (79)
T ss_dssp --EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGTEEEET-TSBCGGGT--TT-EEEE
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE-ecCCcccCC-cCcHhHcCCCCCCEEEe
Confidence 3778899999999999999999999986443 3468765 344455644 58999999999988765
No 105
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=47.09 E-value=37 Score=38.07 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=40.1
Q ss_pred cccccccccCCCcchHHHHHHHHhCChh-HHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHH
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPE-IVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKL 414 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~ 414 (939)
..|..=|.=.-|+||+||++=.|=++.. |+. .++.++..++..+ .|..|..
T Consensus 99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-----------------------~~l~~aw~~f~~G-----~~~~fVa 150 (320)
T PF08715_consen 99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKS-----------------------PGLDEAWNEFKAG-----DPAPFVA 150 (320)
T ss_dssp ETTEEEE---TTTHHHHHHHHHHTTST--BSS-----------------------HHHHHHHHHHHTT-------HHHHH
T ss_pred ECCEEEEEecCCCcHHHHHHHHHHhcCCccCC-----------------------HHHHHHHHHHhCC-----ChHHHHH
Confidence 4566667777899999999876655432 221 0112222222122 3555555
Q ss_pred HHhhcCCccCCCCCCCHHHHHHHHHHHHH
Q 002303 415 KLANFAPQFSGYNQHDSQEFLAFLLDGLH 443 (939)
Q Consensus 415 ~l~~~~p~F~~~~QQDA~EfL~~LLd~L~ 443 (939)
.+-.. ..+.-++--||+++|..||..++
T Consensus 151 ~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 151 WCYAS-TNAKKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp HHHHH-TT--TTS---HHHHHHHHHTTB-
T ss_pred HHHHH-cCCCCCCCcCHHHHHHHHHHhcc
Confidence 44432 34556788999999999997665
No 106
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=45.95 E-value=63 Score=28.59 Aligned_cols=37 Identities=8% Similarity=0.035 Sum_probs=32.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecC
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~ 246 (939)
.+.+.+...-+..+|.+++++.++++++.+.|+-...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 6788999999999999999999999999999985433
No 107
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=45.66 E-value=24 Score=29.04 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=42.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceE
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEV 271 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~I 271 (939)
..+.+.+...+++..+++++-+.-|||+.+.||- |. ...+.|+ .+-...++..|.++
T Consensus 11 KeIeidIep~DkverIKErvEEkeGIPp~qqrli-~~----gkqm~DD-~tA~~Y~~~~GSVl 67 (70)
T KOG0005|consen 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YA----GKQMNDD-KTAAHYNLLGGSVL 67 (70)
T ss_pred ceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhh-hc----ccccccc-ccHHHhhhccceeE
Confidence 4577888999999999999999999999999986 43 3335443 56666666655443
No 108
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=44.40 E-value=1.1e+02 Score=26.93 Aligned_cols=53 Identities=26% Similarity=0.188 Sum_probs=42.2
Q ss_pred cceEEEecCCcchHHHHHHHhhhhccC-CccceeeeEeecc-eeeeeccCCcccc
Q 002303 540 APFTVTVPKYGRFQDLIDALSTKCFLR-NHEKLLVAEIYRS-KIFRVLDEPSDLL 592 (939)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~-~~~~l~~~e~~~~-~~~~~~~~~~~~~ 592 (939)
.-.++.+++..+..+++..+.+..++. ++....++|+... ...+.+.+...++
T Consensus 13 ~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl 67 (87)
T cd01768 13 TYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPL 67 (87)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChH
Confidence 346789999999999999999999998 7888889998776 5566666544443
No 109
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=43.03 E-value=1.3e+02 Score=27.64 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=53.8
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
+.|++.- .+.+.+.+.+.+...+.-|++.-|+.-|++-..+|.. +.+ ..+.. ..|..+++...+..|-+-
T Consensus 21 i~LKV~g-qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl-FdG----~rI~~-~~TP~~L~mEd~D~Iev~ 90 (99)
T KOG1769|consen 21 INLKVKG-QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL-FDG----QRIRE-THTPADLEMEDGDEIEVV 90 (99)
T ss_pred EEEEEec-CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE-ECC----cCcCC-CCChhhhCCcCCcEEEEE
Confidence 4556543 5677889999999999999999999999999999886 433 23433 368889998888776543
No 110
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=41.55 E-value=50 Score=29.62 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=36.0
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYI 241 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RL 241 (939)
.+|++.+ +|+..+++.+-+.++..++.+.++...++|.+-++-
T Consensus 2 V~L~V~L-pdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 2 VELRIAL-PDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred eEEEEEc-cCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 4566654 778889999999999999999999999999775533
No 111
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=40.82 E-value=1e+02 Score=32.57 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=38.4
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCcc---ceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSE---MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e---~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
....+.+.+..||.+|.+.+.+..+++.+ ++|+|..++..-...+.. +..+... .....+.+|.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~-d~~i~~l--~~~~~~r~E~ 100 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSE-DEPISSL--NDYITLRIEE 100 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-T-TSBGGGS----TTEEEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCC-CCchhhc--cCcceeeeec
Confidence 45788999999999999999999999754 799999877655555543 3456555 2223566773
No 112
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=39.55 E-value=42 Score=33.26 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=52.2
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeec
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~d 278 (939)
.++..+...+|+..++..+..-.+||+++.|+-. ....|+|. .++.|.+++....+-+-++-.
T Consensus 12 ti~~eve~~~ti~~~Kakiq~~egIp~dqqrlif-----ag~qLedg-rtlSDY~Iqkestl~l~l~l~ 74 (156)
T KOG0004|consen 12 TITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIF-----AGKQLEDG-RTLSDYNIQKESTLHLVLRLR 74 (156)
T ss_pred ceeeeecccccHHHHHHhhhcccCCCchhhhhhh-----hhcccccC-CccccccccccceEEEEEEec
Confidence 4677889999999999999999999999999874 34567775 889999999888887766633
No 113
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=39.18 E-value=77 Score=27.93 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecCccc
Q 002303 218 EDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (939)
Q Consensus 218 ~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg~W~ 282 (939)
+.++.+|+.++|..|+++.+.++|....+++ ..++. .. ..--+++++++-++.+-+|.
T Consensus 20 A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT---~VddE-ey---F~tLp~nT~lm~L~~ge~W~ 77 (78)
T PF02017_consen 20 ASSLEELLEKACDKLQLPEEPVRLVLEEDGT---EVDDE-EY---FQTLPDNTVLMLLEKGEKWT 77 (78)
T ss_dssp ESSHHHHHHHHHHHHT-SSSTCEEEETTTTC---BESSC-HH---HCCSSSSEEEEEEESSS--S
T ss_pred cCCHHHHHHHHHHHhCCCCcCcEEEEeCCCc---EEccH-HH---HhhCCCCCEEEEECCCCccC
Confidence 4799999999999999999888887554333 22221 11 12223567777766677773
No 114
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=35.13 E-value=1.3e+02 Score=27.07 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=49.0
Q ss_pred eEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecc-eeeeeccCCcc
Q 002303 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS-KIFRVLDEPSD 590 (939)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~ 590 (939)
..|.++..||++ ..+.|....|..++++.|.......+.....++|..-. .+-+.|+|.+.
T Consensus 3 ~vvkv~~~Dg~s----K~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~ 64 (85)
T cd01787 3 QVVKVYSEDGAS----KSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHEL 64 (85)
T ss_pred eEEEEEecCCCe----eEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHH
Confidence 346778889875 57889999999999999999999999999999988643 56677776543
No 115
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=34.79 E-value=89 Score=29.50 Aligned_cols=53 Identities=4% Similarity=-0.001 Sum_probs=39.5
Q ss_pred cCC-CeEEEEEccCCCHHHHHHHHHHHc-----C--CCccceEEEeecCCccccccccccccccccc
Q 002303 206 QET-NSLLVKISLEDNKVDLYKRACNLF-----I--SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFS 264 (939)
Q Consensus 206 ~~~-~~~~~~~Sk~~ti~eL~~~v~~lf-----~--i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~ 264 (939)
+|+ ..=...++..+||.+|++++.... + .+.+++||- | ...+|.|. +||.+++
T Consensus 12 ~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI-y----sGKiLeD~-~TL~d~~ 72 (113)
T cd01814 12 YDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI-S----AGKILENS-KTVGECR 72 (113)
T ss_pred cCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE-e----CCeecCCC-CcHHHhC
Confidence 443 444677889999999999998666 3 347888886 3 44567764 8899998
No 116
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=34.19 E-value=7.8 Score=44.94 Aligned_cols=106 Identities=22% Similarity=0.405 Sum_probs=0.0
Q ss_pred EEeeeCCCeEEEEEeeeEeccccccccceeeecCCCC-CCCCCcccccCCC-----------------------------
Q 002303 824 LDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDD-LDLSNYVCCKNSQ----------------------------- 873 (939)
Q Consensus 824 ~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~-LDls~~v~~~~~~----------------------------- 873 (939)
+.+...|-.+||+.-||.-+-.+-.||-.-+..|+.+ +..++.-+.-.+.
T Consensus 516 ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~Vtd~~e~~prQcsicg~la~yecr~c~~sp~~~sgle~~~fc~~c~ 595 (724)
T KOG3556|consen 516 IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLPVTDRHEVNPRQCSICGLLAPYECRYCPPSPPRASGLEIKQFCKTCN 595 (724)
T ss_pred cccccCcchhheeccccCcccccchhcCCceEeeccccccCCcceeeecccCCCCCCccCCCCcccccchhHhhhhhHHH
Q ss_pred ----------------------------CCceEEEEEEEEeeccCCCCeEEEEEEe--CCCCEEE-------------Ec
Q 002303 874 ----------------------------LSNRYVLYAISNHYGGMGGGHYTAFVDL--GHKRWFE-------------FD 910 (939)
Q Consensus 874 ----------------------------~~~~YdL~AVinH~G~l~gGHYtAy~k~--~~~~Wy~-------------fn 910 (939)
....-+|+||++-.-+ ||+|+++- ++..|.. ||
T Consensus 596 ~qfh~h~kr~~Vf~~k~l~~~~~~h~~i~~~~~el~~~l~~~t~----~~~~~~~~~~~~~a~lf~~~~~~r~~gqn~~~ 671 (724)
T KOG3556|consen 596 TQFHLHPKRNPVFLPKDLPDWDWRHGCIPCQNMELFAVLCIETS----HYVAFVKYGKDDSAWLFFDSMADRDGGQNGFN 671 (724)
T ss_pred HHHhhhcccCcccCCccCcccccccccchhhhHhhhhhhhcccc----ccccHHHhccchhhhhhhcchhhhhcccccCC
Q ss_pred CCcceecCcccc----------------------CCCceEEEEEE
Q 002303 911 DDRVYPVSEDNI----------------------KTSAAYVLFYK 933 (939)
Q Consensus 911 Ds~Vs~vs~~~v----------------------~s~~AYvLFY~ 933 (939)
|..|++..+-.- .-.+|||+.|+
T Consensus 672 ~~q~~~~~~v~e~l~~s~~~~h~ldr~i~~~~~~~~~~~~~~m~q 716 (724)
T KOG3556|consen 672 IPQVTPCPEVGEYLKMSLEDLHSLDRRIQGCARRLLCDAYMCMYQ 716 (724)
T ss_pred CccccCCcchhhHhhcchhhhHHHHHHHHHHHHHHhccccceeee
No 117
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=34.01 E-value=2e+02 Score=26.24 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=48.2
Q ss_pred EEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCc
Q 002303 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPS 589 (939)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~ 589 (939)
.+-++|.-....++-..|...|++|..+++..+-...++......+++||....=-.+.-+|.
T Consensus 12 ~l~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEwvL~p~ 74 (105)
T cd01779 12 HLHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEWVLDPT 74 (105)
T ss_pred EEEEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeeeecCcc
Confidence 344455444455666788999999999999999999999999999999998776555555443
No 118
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=33.67 E-value=1.1e+02 Score=27.02 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=38.7
Q ss_pred cCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecCccc
Q 002303 217 LEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (939)
Q Consensus 217 k~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg~W~ 282 (939)
-+.++.+|+.++|+.|+++...++|....+++ ..++. ... ..-+++..++-+..+-+|.
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGT---eVddE-eYF---~tLp~nT~l~~l~~gq~W~ 77 (78)
T cd01615 19 AASSLEELLSKACEKLKLPSAPVTLVLEEDGT---EVDDE-EYF---QTLPDNTVLMLLEPGQKWT 77 (78)
T ss_pred EcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCc---EEccH-HHH---hcCCCCcEEEEECCCCCcC
Confidence 37899999999999999997888888665443 12121 111 1223566666666666774
No 119
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=33.39 E-value=95 Score=27.26 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=39.2
Q ss_pred cCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecCccc
Q 002303 217 LEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (939)
Q Consensus 217 k~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg~W~ 282 (939)
-+.++.+|+.++|+.|.++...++|....+.+.- -++--++ -+++.+++-+..+-+|.
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeV--tEeyF~t------Lp~nT~lmvL~~gq~W~ 76 (77)
T cd06535 19 AAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEV--TEEYFPT------LPDNTELVLLTPGQSWQ 76 (77)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe--hHHHHhc------CCCCcEEEEEcCCCccC
Confidence 4789999999999999999878888766554421 1222222 23566666666666774
No 120
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=33.28 E-value=2.1e+02 Score=25.10 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=30.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCC--ccceEEE
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISV--SEMLYIW 242 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~--~e~~RLW 242 (939)
...++.++...|..++.+.+.+.|+++ +.+..||
T Consensus 17 ~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 17 TYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 378999999999999999999999993 5578887
No 121
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=32.57 E-value=65 Score=41.07 Aligned_cols=71 Identities=10% Similarity=0.072 Sum_probs=56.0
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe--ecCcccCC
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ--VHGFSDSV 284 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k--~dg~W~~~ 284 (939)
|....++.|...+||++|++.+....+|+.++.||- | ..-.|.|+ +++.++++ +|++|=|-.+ ..+..+|.
T Consensus 11 d~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i-~----~grvl~~~-k~vq~~~v-dgk~~hlverppp~~~~~s~ 83 (1143)
T KOG4248|consen 11 DSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLI-Y----QGRVLQDD-KKVQEYNV-DGKVIHLVERPPPQTHLPSG 83 (1143)
T ss_pred ccceeEEEechHHHHHHHHHHHHHhcccccccceee-e----cceeeccc-hhhhhccC-CCeEEEeeccCCCCcccccc
Confidence 556789999999999999999999999999999986 2 34566664 88999999 7888765555 34455553
No 122
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=32.37 E-value=1.6e+02 Score=25.70 Aligned_cols=63 Identities=6% Similarity=0.029 Sum_probs=50.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
...++.+...++|+.+++.+....+++- ..||-.-.......+|.+. .+|.+.|+..+-.|.+
T Consensus 11 ~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~-~sLA~yGiFs~~~i~l 73 (80)
T cd01811 11 SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSR-KSLADYGIFSKTNICL 73 (80)
T ss_pred CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccccccccc-ccHhhhcceeccEEEE
Confidence 3477888999999999999999999985 7788765555556677664 7899999988776654
No 123
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=31.58 E-value=2.8e+02 Score=24.51 Aligned_cols=52 Identities=25% Similarity=0.278 Sum_probs=40.6
Q ss_pred ceEEEecCCcchHHHHHHHhhhhccCC-ccceeeeEeecceeeeeccCCcccc
Q 002303 541 PFTVTVPKYGRFQDLIDALSTKCFLRN-HEKLLVAEIYRSKIFRVLDEPSDLL 592 (939)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~-~~~l~~~e~~~~~~~~~~~~~~~~~ 592 (939)
-.++.+++..|..+++..+.+..++.. ++...++|+......+.+.+...++
T Consensus 17 ~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl 69 (90)
T smart00314 17 YKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPL 69 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcce
Confidence 467889999999999999999999876 6788888888556666666544443
No 124
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=31.49 E-value=3.3e+02 Score=25.64 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=42.7
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHc----C-CC--ccceEEEeecCCccccccccccccccccccCCCce
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLF----I-SV--SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEE 270 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf----~-i~--~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~ 270 (939)
++|++..........+.|+...|+.+|++++...- . -| ...+||-. .+.+|+| +.+|.++.+..+..
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~-----~GriL~d-~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY-----AGRILED-NKTLSDCRLPSGET 76 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE-----TTEEE-S-SSBTGGGT--TTSE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe-----CCeecCC-cCcHHHhCCCCCCC
Confidence 45565444333478899999999999999998643 1 12 34678863 3346765 58899998877764
No 125
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.60 E-value=24 Score=39.96 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=30.9
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChhHHHHHh
Q 002303 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFL 369 (939)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll 369 (939)
...-++|+.|.||-|+.||..|.+.+..++...+-
T Consensus 174 ~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~g 208 (420)
T KOG1871|consen 174 DEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLG 208 (420)
T ss_pred ccccccccccccccccccchhhcccccCchhhhcC
Confidence 35678999999999999999999999999988553
No 126
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=30.53 E-value=2e+02 Score=24.84 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=40.5
Q ss_pred EEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCcccc--ccccCCCcEEEE
Q 002303 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLL--GLIRDEDKLVAY 604 (939)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~--~~i~~~d~i~~y 604 (939)
.+++....|. ...+.++...++.+|++.++...+++.... -++ +.. +.+.|. ..+ -.|.++..|..|
T Consensus 3 ~i~vkt~~Gk----~~~~~v~~~~TV~~LK~~I~~~~~~~~~~q-rLi--~~G---k~L~D~-~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 3 EVVCNDRLGK----KVRVKCNPDDTIGDLKKLIAAQTGTRPEKI-VLK--KWY---TIFKDH-ISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEECCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCChHHE-EEE--eCC---cCCCCC-CCHHHcCCCCCCEEEEE
Confidence 4444444442 355688889999999999998888765443 332 333 345543 223 346666666655
No 127
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=30.35 E-value=1.5e+02 Score=25.73 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=29.5
Q ss_pred eEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcc
Q 002303 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHE 569 (939)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~ 569 (939)
|.+++-...|.. ..+.++...++.+|++.+++..+++...
T Consensus 2 m~I~Vk~~~G~~----~~l~v~~~~TV~~LK~~I~~~~~~~~~~ 41 (78)
T cd01804 2 MNLNIHSTTGTR----FDLSVPPDETVEGLKKRISQRLKVPKER 41 (78)
T ss_pred eEEEEEECCCCE----EEEEECCcCHHHHHHHHHHHHhCCChHH
Confidence 345555555532 6788899999999999999988876543
No 128
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=30.34 E-value=1.4e+02 Score=26.02 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=26.5
Q ss_pred cCCCHHHHHHHHHHHcCCCccceEEEeecCCc
Q 002303 217 LEDNKVDLYKRACNLFISVSEMLYIWDFSGQT 248 (939)
Q Consensus 217 k~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~ 248 (939)
-+.++.+|+.++|..|+++...++|....+++
T Consensus 17 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT 48 (74)
T smart00266 17 AASSLEELLSKVCDKLALPDSPVTLVLEEDGT 48 (74)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEecCCc
Confidence 37899999999999999998788888654443
No 129
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=29.07 E-value=2.3e+02 Score=28.59 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=40.3
Q ss_pred EEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeec
Q 002303 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (939)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~ 578 (939)
.|.+-..+|...|....+.+|...++.+|...+....+.+....+++.-+.+
T Consensus 2 ~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n 53 (162)
T PF13019_consen 2 NVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSN 53 (162)
T ss_pred eEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCC
Confidence 4566667787788889999999999999999999999888665544443333
No 130
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=28.36 E-value=1.2e+02 Score=32.89 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=33.5
Q ss_pred eEEEEee--ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecC
Q 002303 198 LQIRLSV--SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246 (939)
Q Consensus 198 l~l~l~~--~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~ 246 (939)
+.+++.. .++....++.+|+..|..+|.+.+-+.++++++.+|+|..+.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 4455544 233457899999999999999999999999999999998754
No 131
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=27.84 E-value=2.1e+02 Score=25.15 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.8
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCC--ccceEEEeecCC
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISV--SEMLYIWDFSGQ 247 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~--~e~~RLW~~~~~ 247 (939)
....++.+++..|..++...+.+.|+++ +.++.|+.+...
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 5678999999999999999999999998 456778766543
No 132
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=27.45 E-value=54 Score=38.57 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=61.2
Q ss_pred CCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecc-eeeeeccCCcccccccc
Q 002303 518 IPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS-KIFRVLDEPSDLLGLIR 596 (939)
Q Consensus 518 iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~~~~~i~ 596 (939)
++..+.+.+.|.|+..||.. ..+.|....+.+|+++.|....-...++..-++|.|-| .+.+.|+|.+..+..++
T Consensus 181 lk~a~vrklvVKvfseDgas----ksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls 256 (622)
T KOG3751|consen 181 LKEAKVRKLVVKVFSEDGAS----KSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLS 256 (622)
T ss_pred cccccccceeEEEEccCCce----eeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHh
Confidence 35556678889999999976 56889999999999999988877777889999999877 68888998776665544
No 133
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=27.22 E-value=3.4e+02 Score=23.20 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=30.5
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCcc-ceEEE
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSE-MLYIW 242 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e-~~RLW 242 (939)
.|+...++.+++..|..++.+.+|..++|... -+-|.
T Consensus 4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~ 41 (80)
T PF09379_consen 4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQ 41 (80)
T ss_dssp SSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEE
T ss_pred cCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEE
Confidence 46667899999999999999999999999843 34444
No 134
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=27.22 E-value=3.1e+02 Score=23.96 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=43.3
Q ss_pred EEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhcc-CCccceeee-EeecceeeeeccCCc
Q 002303 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFL-RNHEKLLVA-EIYRSKIFRVLDEPS 589 (939)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~-~~~~~l~~~-e~~~~~~~~~~~~~~ 589 (939)
.+.|+..++.....-.++.+++..+..+++..+.+..++ .++....++ ....+..-+.+.+..
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTS
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCC
Confidence 345566666655556788999999999999999999998 555666665 333444555555433
No 135
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=25.68 E-value=2.3e+02 Score=30.67 Aligned_cols=28 Identities=14% Similarity=0.402 Sum_probs=24.8
Q ss_pred ccCCCcchHHHHHHHHhCChhHHHHHhh
Q 002303 343 RNLGNTCFMNSAIQCLAHTPEIVDYFLG 370 (939)
Q Consensus 343 ~NlGNTCYmNSvLQ~L~~~p~l~~~ll~ 370 (939)
.|--|-|++-++|=+|.|+..|+...-+
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~ 33 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTE 33 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778999999999999999999997743
No 136
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=25.53 E-value=4.1e+02 Score=27.03 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=38.3
Q ss_pred eeEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCc-cceEEEeecCC
Q 002303 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVS-EMLYIWDFSGQ 247 (939)
Q Consensus 197 Pl~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~-e~~RLW~~~~~ 247 (939)
|+.++|.. .|+....+.+....|+.++.+.+|+.++|.. .-+-||.....
T Consensus 3 ~~~~~V~l-~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~ 53 (207)
T smart00295 3 PRVLKVYL-LDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPD 53 (207)
T ss_pred cEEEEEEe-cCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCC
Confidence 45566654 5567788999999999999999999999974 34677765443
No 137
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=23.83 E-value=2.8e+02 Score=23.88 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=31.5
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWD 243 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~ 243 (939)
++....+.+....+..+|..++.+.|+++.+.++|.-
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y 45 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKY 45 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEE
Confidence 4567788888999999999999999999877787753
No 138
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=23.58 E-value=2.6e+02 Score=24.68 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=26.0
Q ss_pred eEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
.+.++|+..++.+|++.|...+|+++..+-+
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL 45 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRL 45 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEE
Confidence 4567899999999999999999998765544
No 139
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=22.84 E-value=1e+02 Score=33.33 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=43.2
Q ss_pred EEEEccCCCHHHHHHHHHHHcCCCcc-ceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 212 LVKISLEDNKVDLYKRACNLFISVSE-MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 212 ~~~~Sk~~ti~eL~~~v~~lf~i~~e-~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
.+.+++.+++.++...+++..|+|++ ++.+|.-...+.-..+ +...++..+.+.+|..|..+.
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~GdIi~fQ~ 151 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQDGDIICFQR 151 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TTEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCCCCEEEEEe
Confidence 46789999999999999999999864 6777754333333445 667899999999998888883
No 140
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=22.61 E-value=1.1e+02 Score=31.01 Aligned_cols=31 Identities=35% Similarity=0.513 Sum_probs=22.0
Q ss_pred EEEEEeec-cCCCCeEEEEEEe-CCCCEEEEcC
Q 002303 881 YAISNHYG-GMGGGHYTAFVDL-GHKRWFEFDD 911 (939)
Q Consensus 881 ~AVinH~G-~l~gGHYtAy~k~-~~~~Wy~fnD 911 (939)
.||||--| ..||=|+.|++-+ ...+.|.||=
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 68999888 6788899999999 6678999873
No 141
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.17 E-value=38 Score=40.41 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=26.5
Q ss_pred cccccccccCCCcchHHHHHHHHhCChhHHH
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVD 366 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~ 366 (939)
..-..|+.+.+|||+||+.+|.++.++.+.-
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~ 104 (492)
T KOG1867|consen 74 KLEHSGNKKHNNTIDVNNGLLYCFACPDFIY 104 (492)
T ss_pred cccccccccccccceeehhhheeccCCcEee
Confidence 4567889999999999999999999986653
No 142
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=22.10 E-value=2.1e+02 Score=25.27 Aligned_cols=58 Identities=10% Similarity=0.128 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecCccc
Q 002303 218 EDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (939)
Q Consensus 218 ~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg~W~ 282 (939)
+.++.+|+.++|..|+++...++|-...+++ .+++. .. ...-+++..++-+..+-+|.
T Consensus 20 A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT---~Vd~E-ey---F~~LpdnT~lm~L~~gq~W~ 77 (78)
T cd06539 20 ASSLQELISKTLDALVITSGLVTLVLEEDGT---VVDTE-EF---FQTLGDNTHFMVLEKGQKWT 77 (78)
T ss_pred ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCC---EEccH-HH---HhhCCCCCEEEEECCCCccC
Confidence 6789999999999999987778887655443 12111 11 11123455555555666673
No 143
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=21.77 E-value=3.4e+02 Score=23.01 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.0
Q ss_pred ceEEEecCCcchHHHHHHHhhhhcc
Q 002303 541 PFTVTVPKYGRFQDLIDALSTKCFL 565 (939)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~ 565 (939)
.+.+.+....++.+|++.+....++
T Consensus 12 ~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 12 TFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCC
Confidence 3677888899999999999999987
No 144
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=21.57 E-value=74 Score=26.92 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=21.2
Q ss_pred CCCccccCcceeEEEEEee--eCCCeEEEEEeeeEe
Q 002303 809 WYCPRCKKHWQASKKLDLW--RSPDILVIHLKRFSF 842 (939)
Q Consensus 809 w~C~~Ck~~~~AtKk~~i~--~lP~iLiIhLKRF~~ 842 (939)
|.||+|+...-..+++..- .+-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 7899999865544444432 223456777777764
No 145
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=21.45 E-value=1.8e+02 Score=32.62 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=52.8
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcC--CCccceEEEeecCCccccccccccccccccccCCCceEEEEEeec
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFI--SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~--i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~d 278 (939)
...+++.+...+||.++++.+-...+ .|.+.++|- | ....|.|. .++.+.++..+..|++.+..+
T Consensus 10 q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLI-y----~GkiL~D~-~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 10 QQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLI-Y----SGKILKDE-TTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CceeEeecCcchhHHHHHHHHHhccCCCCchhhheee-e----cceeccCC-cchhhhccccCceEEEEEecC
Confidence 45678999999999999999999988 777777665 3 44567775 889999999998888887643
No 146
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.99 E-value=43 Score=27.22 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=9.6
Q ss_pred CCCCCccccCcc
Q 002303 807 DMWYCPRCKKHW 818 (939)
Q Consensus 807 d~w~C~~Ck~~~ 818 (939)
=+.|||+||+..
T Consensus 27 fPlyCpKCK~Et 38 (55)
T PF14205_consen 27 FPLYCPKCKQET 38 (55)
T ss_pred ccccCCCCCceE
Confidence 358999999764
No 147
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=20.76 E-value=3.6e+02 Score=23.78 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=32.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCc--cceEEEeec
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVS--EMLYIWDFS 245 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~--e~~RLW~~~ 245 (939)
+...+++.+++..|..++...+.+.|+++. .+..|+...
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 466789999999999999999999999985 466776554
No 148
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=20.27 E-value=2.2e+02 Score=24.14 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=35.8
Q ss_pred eEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCcccc--ccccCCCcEE
Q 002303 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLL--GLIRDEDKLV 602 (939)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~--~~i~~~d~i~ 602 (939)
+.+.+....++.+++..++...|++..+..++ |+.+ .+.|....+ -.|.+++.|+
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li---~~Gk---~L~D~~~~L~~~gi~~~~~l~ 68 (71)
T cd01796 12 FSLDVDPDLELENFKALCEAESGIPASQQQLI---YNGR---ELVDNKRLLALYGVKDGDLVV 68 (71)
T ss_pred EEEEECCcCCHHHHHHHHHHHhCCCHHHeEEE---ECCe---EccCCcccHHHcCCCCCCEEE
Confidence 56788889999999999999999876554433 3333 344433333 3455555544
Done!