Query 002303
Match_columns 939
No_of_seqs 452 out of 2085
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:53:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.9E-77 6.5E-82 680.8 35.4 355 335-937 4-360 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 1E-73 3.4E-78 656.3 30.1 337 335-936 58-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 1.5E-69 5.1E-74 610.0 34.3 337 336-938 6-345 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 7.9E-69 2.7E-73 605.8 27.9 335 338-938 2-353 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 2E-63 6.8E-68 562.5 27.3 296 336-937 3-316 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 1.3E-62 4.5E-67 565.7 22.7 319 336-937 11-395 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 1.2E-60 4.3E-65 561.0 29.0 315 335-936 137-474 (476)
8 2f1z_A Ubiquitin carboxyl-term 100.0 3.4E-60 1.2E-64 562.9 27.7 298 334-937 170-485 (522)
9 1vjv_A Ubiquitin carboxyl-term 100.0 6.9E-60 2.4E-64 545.2 25.9 296 335-936 20-414 (415)
10 3ihp_A Ubiquitin carboxyl-term 100.0 7.7E-58 2.6E-62 565.4 27.2 156 333-521 338-513 (854)
11 3jyu_A Ubiquitin carboxyl-term 100.0 1.5E-36 5.3E-41 320.1 17.8 188 87-284 28-229 (231)
12 4a3p_A Ubiquitin carboxyl-term 100.0 4.2E-36 1.4E-40 314.0 18.0 185 87-284 19-217 (217)
13 2vhf_A Ubiquitin carboxyl-term 99.9 8.4E-27 2.9E-31 255.0 11.5 100 337-443 7-112 (374)
14 1w6v_A Ubiquitin carboxyl-term 99.8 3.4E-19 1.2E-23 172.8 10.3 84 87-180 43-134 (141)
15 2ylm_A Ubiquitin carboxyl-term 99.3 2.4E-11 8.2E-16 142.8 18.4 296 212-665 150-475 (530)
16 3phx_B Ubiquitin-like protein 96.6 0.012 4.3E-07 50.1 10.1 65 206-276 12-76 (79)
17 1v5o_A 1700011N24RIK protein; 96.5 0.0058 2E-07 55.3 7.9 69 209-282 22-91 (102)
18 3plu_A Ubiquitin-like modifier 96.4 0.017 5.7E-07 51.0 9.4 72 196-273 18-90 (93)
19 4dbg_A Ranbp-type and C3HC4-ty 96.3 0.014 4.7E-07 53.0 8.9 79 191-275 13-98 (105)
20 3mtn_B UBA80, ubcep1, ubiquiti 96.3 0.017 5.7E-07 49.9 9.3 66 206-277 11-76 (85)
21 4ajy_B Transcription elongatio 96.3 0.016 5.3E-07 53.6 9.1 72 206-283 9-87 (118)
22 3v6c_B Ubiquitin; structural g 96.3 0.016 5.5E-07 51.0 9.0 65 206-276 25-89 (91)
23 3n3k_B Ubiquitin; hydrolase, p 96.3 0.013 4.5E-07 50.6 8.3 66 206-277 11-76 (85)
24 1sif_A Ubiquitin; hydrophobic 96.2 0.013 4.4E-07 51.4 8.2 66 206-277 17-82 (88)
25 2kan_A Uncharacterized protein 96.2 0.016 5.6E-07 51.5 8.8 63 210-277 26-88 (94)
26 4hcn_B Polyubiquitin, ubiquiti 96.2 0.016 5.4E-07 51.9 8.7 66 206-277 30-95 (98)
27 3dbh_I NEDD8; cell cycle, acti 96.2 0.014 4.9E-07 50.8 8.2 65 206-276 20-84 (88)
28 2kjr_A CG11242; UBL, ubiquitin 96.2 0.018 6.2E-07 51.3 8.9 65 210-274 29-93 (95)
29 4fbj_B NEDD8; effector-HOST ta 96.1 0.016 5.5E-07 50.8 8.2 68 206-279 8-75 (88)
30 3a9j_A Ubiquitin; protein comp 96.1 0.024 8.3E-07 47.5 9.0 66 206-277 8-73 (76)
31 1wh3_A 59 kDa 2'-5'-oligoadeny 96.1 0.019 6.5E-07 49.9 8.5 65 207-277 16-80 (87)
32 1ndd_A NEDD8, protein (ubiquit 96.1 0.023 8E-07 47.7 8.8 66 206-277 8-73 (76)
33 2bwf_A Ubiquitin-like protein 96.1 0.032 1.1E-06 47.1 9.6 63 207-275 12-74 (77)
34 1wy8_A NP95-like ring finger p 96.1 0.034 1.1E-06 48.6 10.0 65 209-279 19-84 (89)
35 2hj8_A Interferon-induced 17 k 96.1 0.022 7.5E-07 49.8 8.7 65 207-277 13-77 (88)
36 2fnj_B Transcription elongatio 96.0 0.021 7.1E-07 52.9 8.7 69 208-282 11-86 (118)
37 1wjn_A Tubulin-folding protein 96.0 0.032 1.1E-06 49.8 9.7 69 207-275 21-91 (97)
38 3k9o_B Ubiquitin, UBB+1; E2-25 96.0 0.026 8.9E-07 50.1 9.0 68 206-279 9-76 (96)
39 2uyz_B Small ubiquitin-related 95.9 0.027 9.1E-07 48.0 8.6 65 206-276 11-75 (79)
40 4b6w_A Tubulin-specific chaper 95.9 0.039 1.3E-06 48.2 9.5 65 208-273 14-80 (86)
41 3vdz_A Ubiquitin-40S ribosomal 95.9 0.038 1.3E-06 50.7 9.7 66 206-277 43-108 (111)
42 2kd0_A LRR repeats and ubiquit 95.9 0.025 8.6E-07 49.2 8.1 63 206-274 19-81 (85)
43 1wxv_A BAG-family molecular ch 95.9 0.031 1.1E-06 49.3 8.8 64 207-275 15-83 (92)
44 4dwf_A HLA-B-associated transc 95.8 0.041 1.4E-06 48.2 9.4 64 206-276 13-76 (90)
45 4eew_A Large proline-rich prot 95.7 0.047 1.6E-06 47.6 9.5 63 206-275 25-87 (88)
46 2kk8_A Uncharacterized protein 95.7 0.031 1.1E-06 48.5 8.2 64 207-276 19-83 (84)
47 2kj6_A Tubulin folding cofacto 95.7 0.043 1.5E-06 49.1 9.2 66 209-274 27-93 (97)
48 2l7r_A Ubiquitin-like protein 95.7 0.024 8.3E-07 50.2 7.4 63 208-276 27-89 (93)
49 1we6_A Splicing factor, putati 95.6 0.037 1.3E-06 50.7 8.7 65 207-277 39-104 (111)
50 2faz_A Ubiquitin-like containi 95.5 0.071 2.4E-06 45.2 9.6 64 207-276 11-76 (78)
51 2dzi_A Ubiquitin-like protein 95.5 0.05 1.7E-06 46.4 8.7 65 206-276 15-79 (81)
52 1yx5_B Ubiquitin; proteasome, 95.5 0.055 1.9E-06 48.3 9.1 67 206-278 8-74 (98)
53 2klc_A Ubiquilin-1; ubiquitin- 95.5 0.065 2.2E-06 48.2 9.6 63 208-276 34-96 (101)
54 1wyw_B Ubiquitin-like protein 95.5 0.051 1.8E-06 48.5 8.8 65 206-276 29-93 (97)
55 1wx7_A Ubiquilin 3; ubiquitin- 95.5 0.056 1.9E-06 49.0 9.2 61 211-277 29-89 (106)
56 1yqb_A Ubiquilin 3; structural 95.4 0.061 2.1E-06 48.3 9.3 62 210-277 33-94 (100)
57 2kdi_A Ubiquitin, vacuolar pro 95.4 0.055 1.9E-06 49.9 9.1 69 207-281 18-86 (114)
58 2wyq_A HHR23A, UV excision rep 95.4 0.076 2.6E-06 45.7 9.6 64 207-276 14-80 (85)
59 1wju_A NEDD8 ultimate buster-1 95.4 0.039 1.3E-06 49.5 7.7 72 196-274 16-89 (100)
60 1j8c_A Ubiquitin-like protein 95.4 0.066 2.3E-06 50.2 9.6 65 208-278 41-105 (125)
61 1we7_A SF3A1 protein; structur 95.3 0.061 2.1E-06 49.6 8.9 64 209-278 46-109 (115)
62 2daf_A FLJ35834 protein; hypot 95.2 0.07 2.4E-06 49.0 8.9 76 195-276 13-88 (118)
63 3m62_B UV excision repair prot 95.2 0.038 1.3E-06 50.2 7.1 64 207-276 10-73 (106)
64 3m63_B Ubiquitin domain-contai 95.1 0.018 6.3E-07 51.9 4.7 62 207-274 36-97 (101)
65 1wx8_A Riken cDNA 4931431F19; 95.1 0.038 1.3E-06 49.1 6.7 64 208-277 26-89 (96)
66 2ojr_A Ubiquitin; lanthide-bin 95.1 0.098 3.4E-06 47.8 9.6 65 207-277 44-108 (111)
67 3shq_A UBLCP1; phosphatase, hy 95.1 0.045 1.5E-06 59.9 8.5 64 207-274 13-77 (320)
68 1wgg_A Ubiquitin carboxyl-term 95.0 0.044 1.5E-06 48.9 6.9 61 207-274 15-76 (96)
69 1uel_A HHR23B, UV excision rep 95.0 0.13 4.5E-06 45.5 10.0 64 207-276 9-75 (95)
70 1v6e_A Cytoskeleton-associated 94.9 0.078 2.7E-06 47.1 8.2 64 210-274 20-85 (95)
71 1v86_A DNA segment, CHR 7, way 94.8 0.038 1.3E-06 49.2 5.7 61 207-274 25-85 (95)
72 1v5t_A 8430435I17RIK protein; 94.7 0.038 1.3E-06 48.6 5.6 64 207-274 15-80 (90)
73 1t0y_A Tubulin folding cofacto 94.7 0.13 4.4E-06 48.0 9.4 65 210-274 19-84 (122)
74 1wgd_A Homocysteine-responsive 94.6 0.11 3.9E-06 45.7 8.5 63 210-278 21-87 (93)
75 2io1_B Small ubiquitin-related 94.6 0.18 6.2E-06 44.7 9.8 78 198-282 8-86 (94)
76 4a20_A Ubiquitin-like protein 94.6 0.15 5.2E-06 45.5 9.3 60 211-276 34-95 (98)
77 3q3f_A Ribonuclease/ubiquitin 94.6 0.08 2.7E-06 53.3 8.2 78 193-277 101-178 (189)
78 1uh6_A Ubiquitin-like 5; beta- 94.4 0.09 3.1E-06 47.2 7.3 62 207-274 37-98 (100)
79 2dzm_A FAS-associated factor 1 94.4 0.075 2.6E-06 47.7 6.8 65 207-276 17-81 (100)
80 3rt3_B Ubiquitin-like protein 94.3 0.18 6.2E-06 49.0 10.0 66 206-277 89-154 (159)
81 3u30_A Ubiquitin, linear DI-ub 94.1 0.16 5.5E-06 50.1 9.3 67 206-278 28-94 (172)
82 3l0w_B Monoubiquitinated proli 94.1 0.17 5.7E-06 50.1 9.3 68 206-279 8-75 (169)
83 1ttn_A DC-UBP, dendritic cell- 94.1 0.11 3.6E-06 47.2 7.3 64 207-276 32-95 (106)
84 2lxa_A Ubiquitin-like protein 94.0 0.092 3.2E-06 45.9 6.3 64 207-276 10-77 (87)
85 2io0_B Small ubiquitin-related 93.8 0.34 1.2E-05 42.6 9.7 72 198-276 6-77 (91)
86 3qx1_A FAS-associated factor 1 93.0 0.51 1.8E-05 40.7 9.4 70 205-276 14-83 (84)
87 3b08_A Polyubiquitin-C, ubiqui 93.0 0.36 1.2E-05 46.1 9.4 66 206-277 84-149 (152)
88 3rt3_B Ubiquitin-like protein 92.7 0.38 1.3E-05 46.7 9.2 66 206-276 10-76 (159)
89 3b08_A Polyubiquitin-C, ubiqui 92.6 0.39 1.3E-05 45.9 9.0 66 206-277 8-73 (152)
90 1x1m_A Ubiquitin-like protein 92.6 0.37 1.3E-05 43.7 8.3 62 209-276 26-99 (107)
91 2kzr_A Ubiquitin thioesterase 92.4 0.14 4.7E-06 44.5 4.9 63 211-274 12-75 (86)
92 1v2y_A 3300001G02RIK protein; 92.3 0.29 9.7E-06 44.3 7.1 69 206-279 15-98 (105)
93 1wm3_A Ubiquitin-like protein 92.0 0.65 2.2E-05 38.7 8.5 69 198-273 2-70 (72)
94 3u30_A Ubiquitin, linear DI-ub 91.7 0.31 1.1E-05 48.0 7.3 65 206-276 104-168 (172)
95 3b1l_X E3 ubiquitin-protein li 90.8 0.035 1.2E-06 46.8 0.0 63 208-276 10-72 (76)
96 1wia_A Hypothetical ubiquitin- 91.2 0.56 1.9E-05 41.3 7.7 62 207-276 16-77 (95)
97 2d07_B Ubiquitin-like protein 91.2 1.1 3.7E-05 39.5 9.4 71 198-275 18-88 (93)
98 1wf9_A NPL4 family protein; be 91.0 0.29 1E-05 44.4 5.7 65 211-276 19-94 (107)
99 3u5e_m 60S ribosomal protein L 90.9 0.043 1.5E-06 51.7 0.0 67 207-279 9-76 (128)
100 2eke_C Ubiquitin-like protein 90.7 1.5 5.3E-05 39.6 10.0 70 198-275 32-101 (106)
101 3a4r_A Nfatc2-interacting prot 90.2 1.2 3.9E-05 38.0 8.4 69 198-273 8-77 (79)
102 3u5c_f 40S ribosomal protein S 89.8 0.06 2.1E-06 52.3 0.0 67 207-279 9-76 (152)
103 3kyd_D Small ubiquitin-related 89.8 1.7 5.8E-05 39.8 9.6 72 197-275 40-111 (115)
104 2kdb_A Homocysteine-responsive 89.6 0.76 2.6E-05 41.1 7.1 58 210-273 37-98 (99)
105 1wz0_A Ubiquitin-like protein 89.2 1 3.4E-05 40.6 7.6 72 198-276 25-96 (104)
106 3ai5_A Yeast enhanced green fl 89.2 0.87 3E-05 49.1 8.4 64 207-276 242-305 (307)
107 2pjh_A Protein NPL4, nuclear p 88.7 0.38 1.3E-05 41.2 4.2 64 210-274 15-78 (80)
108 1wj4_A KIAA0794 protein; UBX d 88.5 1.2 3.9E-05 41.6 7.7 72 198-276 46-119 (124)
109 2dzk_A UBX domain-containing p 88.4 2.2 7.6E-05 38.7 9.5 71 198-274 16-88 (109)
110 1wgh_A Ubiquitin-like 3, HCG-1 87.3 2.6 8.9E-05 38.7 9.2 61 208-274 26-94 (116)
111 2k8h_A Small ubiquitin protein 87.1 1.4 4.8E-05 40.1 7.2 73 197-276 26-98 (110)
112 2dzj_A Synaptic glycoprotein S 86.8 1.6 5.3E-05 38.0 7.1 59 211-273 25-85 (88)
113 2gow_A HCG-1 protein, ubiquiti 86.8 2 6.8E-05 40.0 8.2 62 207-274 26-95 (125)
114 2cr5_A Reproduction 8; UBX dom 86.3 3.6 0.00012 37.3 9.5 79 196-280 24-102 (109)
115 3pge_A SUMO-modified prolifera 84.1 3.7 0.00013 41.4 9.2 71 198-276 30-100 (200)
116 1oqy_A HHR23A, UV excision rep 83.7 1.6 5.4E-05 48.5 6.9 66 207-278 16-85 (368)
117 1se9_A Ubiquitin family; ubiqu 79.6 6.7 0.00023 36.5 8.5 57 207-269 25-89 (126)
118 3tix_A Ubiquitin-like protein 78.5 4.9 0.00017 40.0 7.6 71 198-276 58-128 (207)
119 2jxx_A Nfatc2-interacting prot 77.4 9.7 0.00033 33.7 8.5 69 198-273 26-95 (97)
120 1s3s_G P47 protein; AAA ATPase 71.7 8.8 0.0003 35.7 7.2 70 198-274 55-125 (127)
121 3goe_A DNA repair protein RAD6 69.5 29 0.001 29.3 8.9 64 204-273 15-79 (82)
122 2kvr_A Ubiquitin carboxyl-term 68.7 7.2 0.00024 36.5 5.8 37 210-246 57-93 (130)
123 2al3_A TUG long isoform; TUG U 61.7 19 0.00065 31.3 6.6 63 206-274 17-79 (90)
124 1wgr_A Growth factor receptor- 61.7 18 0.00063 32.1 6.7 67 524-594 8-75 (100)
125 2bps_A YUKD protein; ubiquitin 59.7 17 0.00059 30.9 6.0 66 206-273 14-80 (81)
126 2kc2_A Talin-1, F1; FERM, adhe 58.7 13 0.00046 34.5 5.5 33 205-237 18-50 (128)
127 2l76_A Nfatc2-interacting prot 58.6 35 0.0012 30.0 7.8 67 198-272 22-88 (95)
128 4efo_A Serine/threonine-protei 50.5 28 0.00094 30.6 5.9 43 200-242 15-57 (94)
129 2xzm_9 RPS31E; ribosome, trans 50.5 3.3 0.00011 41.3 0.0 59 208-277 10-68 (189)
130 4b6w_A Tubulin-specific chaper 47.4 59 0.002 27.7 7.5 62 542-603 17-80 (86)
131 3v7o_A Minor nucleoprotein VP3 44.4 4.9 0.00017 40.6 0.1 71 198-276 22-92 (227)
132 1v6e_A Cytoskeleton-associated 43.8 1.5E+02 0.0052 25.3 9.9 34 540-573 19-52 (95)
133 3mtn_B UBA80, ubcep1, ubiquiti 42.2 1.1E+02 0.0036 25.2 8.4 44 526-573 4-47 (85)
134 4hcn_B Polyubiquitin, ubiquiti 41.0 84 0.0029 27.1 7.8 48 521-572 18-65 (98)
135 1t0y_A Tubulin folding cofacto 40.8 1.2E+02 0.004 27.6 9.0 34 540-573 18-51 (122)
136 2daj_A KIAA0977 protein, COBL- 40.2 49 0.0017 28.3 5.5 64 200-266 11-75 (91)
137 1v5o_A 1700011N24RIK protein; 39.9 76 0.0026 27.7 7.4 56 541-602 23-80 (102)
138 3uf8_A Ubiquitin-like protein 39.6 85 0.0029 31.5 8.5 71 198-276 22-92 (209)
139 3ivf_A Talin-1; FERM domain, c 39.1 79 0.0027 34.6 9.0 73 198-273 4-81 (371)
140 1qmy_A Protease, leader protea 37.5 14 0.00049 34.5 2.0 24 336-359 10-33 (167)
141 2v1y_A Phosphatidylinositol-4, 35.2 1.6E+02 0.0053 26.5 8.4 66 203-268 24-97 (108)
142 3k9o_B Ubiquitin, UBB+1; E2-25 34.3 1.4E+02 0.0047 25.3 8.1 43 526-572 2-44 (96)
143 3plu_A Ubiquitin-like modifier 33.9 1.9E+02 0.0064 25.2 8.5 58 541-605 33-92 (93)
144 2kj6_A Tubulin folding cofacto 33.8 1.4E+02 0.0047 26.1 7.9 34 540-573 27-60 (97)
145 2kjr_A CG11242; UBL, ubiquitin 31.0 2E+02 0.0067 24.9 8.4 33 541-573 29-61 (95)
146 1wjn_A Tubulin-folding protein 31.0 1.4E+02 0.0049 25.6 7.6 64 541-604 24-90 (97)
147 1wju_A NEDD8 ultimate buster-1 29.7 2.6E+02 0.0089 24.5 8.9 60 540-606 30-91 (100)
148 2l05_A Serine/threonine-protei 29.2 2.7E+02 0.0092 24.2 8.5 72 199-276 19-90 (95)
149 1wgy_A RAP guanine nucleotide 28.9 1.2E+02 0.0042 26.9 6.6 64 542-606 22-86 (104)
150 2cr8_A MDM4 protein; ZF-ranbp 28.8 17 0.00058 27.8 0.8 14 804-817 7-20 (53)
151 3mp2_A Non-structural protein 27.9 63 0.0022 32.6 5.1 29 887-918 167-195 (211)
152 3v6c_B Ubiquitin; structural g 27.6 1.3E+02 0.0043 25.5 6.5 46 523-572 15-60 (91)
153 4eew_A Large proline-rich prot 27.3 93 0.0032 26.0 5.6 45 524-572 16-60 (88)
154 2dzi_A Ubiquitin-like protein 27.1 1.5E+02 0.005 24.1 6.7 45 524-572 6-50 (81)
155 1sif_A Ubiquitin; hydrophobic 26.7 94 0.0032 26.2 5.5 44 525-572 9-52 (88)
156 2ylm_A Ubiquitin carboxyl-term 26.4 55 0.0019 37.9 5.1 37 210-246 37-73 (530)
157 1oey_A P67-PHOX, neutrophil cy 26.1 1.3E+02 0.0046 25.6 6.1 37 209-245 14-50 (83)
158 3dbh_I NEDD8; cell cycle, acti 25.8 1.3E+02 0.0044 25.0 6.2 45 524-572 11-55 (88)
159 2kk8_A Uncharacterized protein 25.6 1.1E+02 0.0038 25.7 5.7 44 525-572 10-53 (84)
160 3a9j_A Ubiquitin; protein comp 24.4 1.1E+02 0.0038 24.3 5.4 31 542-572 13-43 (76)
161 1wxm_A A-RAF proto-oncogene se 24.1 3.4E+02 0.012 23.2 8.8 71 200-276 10-80 (86)
162 2eel_A Cell death activator CI 23.8 1.6E+02 0.0055 25.5 6.2 59 218-283 27-85 (91)
163 1ndd_A NEDD8, protein (ubiquit 23.0 1.2E+02 0.0043 24.0 5.4 31 542-572 13-43 (76)
164 1yqb_A Ubiquilin 3; structural 22.9 1.6E+02 0.0055 25.5 6.4 46 522-572 19-64 (100)
165 2fe8_A PP1AB, ORF1AB, replicas 22.7 1E+02 0.0036 33.0 5.9 32 886-919 265-296 (315)
166 3n3k_B Ubiquitin; hydrolase, p 22.6 97 0.0033 25.5 4.7 43 526-572 4-46 (85)
167 2dhz_A RAP guanine nucleotide 21.6 1.6E+02 0.0054 27.0 6.0 64 542-605 22-91 (120)
168 4ekf_A Adenain; alpha and beta 21.2 78 0.0027 31.2 4.1 31 881-911 40-72 (204)
169 4fbj_B NEDD8; effector-HOST ta 21.1 1.4E+02 0.0049 25.0 5.5 31 542-572 13-43 (88)
170 3mp2_A Non-structural protein 20.6 75 0.0026 32.0 4.0 70 337-439 11-80 (211)
171 1wx7_A Ubiquilin 3; ubiquitin- 20.3 2.1E+02 0.0073 24.9 6.7 45 523-572 15-59 (106)
172 3phx_B Ubiquitin-like protein 20.1 1.7E+02 0.0059 23.7 5.7 43 526-572 5-47 (79)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-77 Score=680.79 Aligned_cols=355 Identities=57% Similarity=1.004 Sum_probs=319.0
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChhHHHHHhhh-cccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHH
Q 002303 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (939)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~ 413 (939)
..+|++||.|+||||||||+||||+|+|+|+++|+.. +..+++..++.+..+.++.+|+.|+..||.+...+++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 4689999999999999999999999999999999964 666777788888889999999999999999988899999999
Q ss_pred HHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEE
Q 002303 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (939)
Q Consensus 414 ~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~ 493 (939)
.++++..|+|.+++||||||||.+|||.||++++++.++|+.+..+.++.++.+.|.++|..+..++.|+|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 494 s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
++++|..|+++|.++|+|++|+||||....+.+.+.+
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~------------------------------------------- 200 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPM------------------------------------------- 200 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeee-------------------------------------------
Confidence 9999999999999999999999999975321100000
Q ss_pred eEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCCh
Q 002303 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (939)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (939)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcc
Q 002303 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (939)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (939)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcc
Q 002303 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (939)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~ 813 (939)
|.+.. .....++|++||+.|+++|.|+++|.|+|++
T Consensus 201 ---------------------~~~~~-----------------------~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~ 236 (367)
T 2y6e_A 201 ---------------------LQPQK-----------------------KKKTTVALRDCIELFTTMETLGEHDPWYCPN 236 (367)
T ss_dssp -----------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETT
T ss_pred ---------------------ecccc-----------------------ccCCCCCHHHHHHHhcccccCCCCCCccCCC
Confidence 00000 0003469999999999999999999999999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeeccCCCC
Q 002303 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (939)
Q Consensus 814 Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (939)
|++++.|+|++.|+++|+|||||||||.|+++.+.|+++.|.||++.|||++|+..+.. .+..|+|+|||+|+|++++|
T Consensus 237 C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~G 315 (367)
T 2y6e_A 237 CKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNHYGAMGVG 315 (367)
T ss_dssp TTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEEECSSSSC
T ss_pred CCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC-CCceEEEEEEeecCCCCCCC
Confidence 99999999999999999999999999999988889999999999778999999987654 67899999999999999999
Q ss_pred eEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEEEecC
Q 002303 894 HYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937 (939)
Q Consensus 894 HYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~~~ 937 (939)
||+||+|+ .+++||.|||+.|+++++++|.+.+||||||+|++.
T Consensus 316 HY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 316 HYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 360 (367)
T ss_dssp EEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC
T ss_pred eeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCC
Confidence 99999998 478999999999999999999999999999999874
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1e-73 Score=656.26 Aligned_cols=337 Identities=45% Similarity=0.863 Sum_probs=305.5
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChhHHHHHhhh-cccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHH
Q 002303 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (939)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~ 413 (939)
..+|++||.|+||||||||+||||+++|+|++||+.. +..+++..++++..+.++.+|+.|++.||.+...+++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 3589999999999999999999999999999999864 556677777888888999999999999999888899999999
Q ss_pred HHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEE
Q 002303 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (939)
Q Consensus 414 ~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~ 493 (939)
.+++...++|.+++||||||||.+|||.||+++++...+++.+..+.++.++.+.|+++|..+..++.|+|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99999999999999999999999999999999998877777666677778889999999999999999999999999999
Q ss_pred eEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 494 s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
++++|..|++++.++|+|++|+|+||...
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~--------------------------------------------------- 246 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTS--------------------------------------------------- 246 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSS---------------------------------------------------
T ss_pred EEEEeCCCCceecccccceeeeecccccc---------------------------------------------------
Confidence 99999999999999999999999997420
Q ss_pred eEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCCh
Q 002303 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (939)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (939)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcc
Q 002303 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (939)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (939)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcc
Q 002303 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (939)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~ 813 (939)
.++|++||+.|+++|.|+++|.|+|++
T Consensus 247 -----------------------------------------------------~~sL~~~L~~f~~~E~l~~~n~~~C~~ 273 (396)
T 2gfo_A 247 -----------------------------------------------------KCTLQDCLRLFSKEEKLTDNNRFYCSH 273 (396)
T ss_dssp -----------------------------------------------------EEEHHHHHHHHTSCEEECSTTCEEETT
T ss_pred -----------------------------------------------------cCCHHHHHHHhCCcccccCCcccccCC
Confidence 137999999999999999999999999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeeccCCCC
Q 002303 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (939)
Q Consensus 814 Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (939)
|++++.|+|++.|+++|+|||||||||.|+..++.|+++.|.||++.|||++|+..+.. ....|+|+|||+|+|++++|
T Consensus 274 C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~G 352 (396)
T 2gfo_A 274 CRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN-NLKKYNLFSVSNHYGGLDGG 352 (396)
T ss_dssp TTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS-SCCCBEEEEEEEEESCTTTC
T ss_pred cccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCC-CCceEEEEEEEEecCCCCCC
Confidence 99999999999999999999999999999987889999999999878999999987544 56789999999999999999
Q ss_pred eEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEEEec
Q 002303 894 HYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 936 (939)
Q Consensus 894 HYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~~ 936 (939)
||+||+|+ .+++||.|||+.|+++++++|.+.+||||||+|++
T Consensus 353 HY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 353 HYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred ceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 99999998 47899999999999999999999999999999975
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.5e-69 Score=609.99 Aligned_cols=337 Identities=43% Similarity=0.755 Sum_probs=305.2
Q ss_pred cccccccccCCCcchHHHHHHHHhCChhHHHHHhhh-cccccccCCCCCCchHHHHHHHHHHHHhc-CCCCCccchHHHH
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLW-APGGIPVAPRMFK 413 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~i~P~~f~ 413 (939)
.+|++||.|+||||||||+||||+++|+|++++++. +....+. ......+++.+|+.|+..|| .+....++|..|+
T Consensus 6 ~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~ 83 (348)
T 3nhe_A 6 AQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH--GSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFK 83 (348)
T ss_dssp CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCS--SCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHH
T ss_pred CCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhcc--CCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHH
Confidence 579999999999999999999999999999999864 3333322 22346789999999999999 5667789999999
Q ss_pred HHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEE
Q 002303 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (939)
Q Consensus 414 ~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~ 493 (939)
.+++...|.|.+++||||||||.+|||.||+++++...++.....+.+..++.+.+.+.|..+..++.++|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~ 163 (348)
T 3nhe_A 84 TQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK 163 (348)
T ss_dssp HHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEE
T ss_pred HHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEE
Confidence 99999999999999999999999999999999998887777666677778889999999999999999999999999999
Q ss_pred eEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 494 s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
++++|..|++.+.++|+|++|+|+||....
T Consensus 164 ~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~-------------------------------------------------- 193 (348)
T 3nhe_A 164 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGY-------------------------------------------------- 193 (348)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCCSSCS--------------------------------------------------
T ss_pred EEEEcCCCCCEeeeeccceEEeeeCCCccc--------------------------------------------------
Confidence 999999999999999999999999974210
Q ss_pred eEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCCh
Q 002303 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (939)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (939)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcc
Q 002303 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (939)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (939)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcc
Q 002303 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (939)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~ 813 (939)
..++|++||+.|+++|.+++++.|+|++
T Consensus 194 ----------------------------------------------------~~~sl~~~L~~~~~~e~l~~~~~~~C~~ 221 (348)
T 3nhe_A 194 ----------------------------------------------------PEVTLMDCMRLFTKEDVLDGDEKPTCCR 221 (348)
T ss_dssp ----------------------------------------------------SCEEHHHHHHHHHSCEEECGGGCCEETT
T ss_pred ----------------------------------------------------CCCCHHHHHHHhcCceEecCCCceECCC
Confidence 1248999999999999999999999999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeeccCCCC
Q 002303 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (939)
Q Consensus 814 Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (939)
|++++.|+|++.|+++|+||+||||||.+.+....|+.+.|.||++.|||++|+.... ....|+|+|||+|.|++.+|
T Consensus 222 C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~G~~~~G 299 (348)
T 3nhe_A 222 CRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHSGTTMGG 299 (348)
T ss_dssp TTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEEECSSCE
T ss_pred CCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC--CCCcEEEEEEEEccCCCCCc
Confidence 9999999999999999999999999999998888999999999988899999997544 56789999999999999999
Q ss_pred eEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEEEecCC
Q 002303 894 HYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSDV 938 (939)
Q Consensus 894 HYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~~~~ 938 (939)
||+||+|+ .+++||+|||+.|+++++++|.+..||||||+|++..
T Consensus 300 HY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 300 HYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp EEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC--
T ss_pred ccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCC
Confidence 99999998 5789999999999999999999999999999998753
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=7.9e-69 Score=605.77 Aligned_cols=335 Identities=40% Similarity=0.683 Sum_probs=284.0
Q ss_pred cccccccCCCcchHHHHHHHHhCChhHHHHHhhh-cccccccCCCCCCchHHHHHHHHHHHHhcCCCC-CccchHHHHHH
Q 002303 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGG-IPVAPRMFKLK 415 (939)
Q Consensus 338 g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~-~~i~P~~f~~~ 415 (939)
|++||.|+||||||||+||||+++|+|+++++.. +..... ..+...+++.+|+.|+..||.+.. .+++|..|+.+
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~ 78 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP---GGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAV 78 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcC---CCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 7899999999999999999999999999999854 322222 122345799999999999998765 68999999999
Q ss_pred HhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccc---------------cCCCCCChHHHHHHHHHhhhccC
Q 002303 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEA---------------KDAEGQPEEEVAEEYWRNHRARN 480 (939)
Q Consensus 416 l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~---------------~d~~~~~~~~~a~e~w~~~~~~~ 480 (939)
++...|.|.+++||||||||.+|||.||++++...++..... ......++.+.+.+.|..+..++
T Consensus 79 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T 3i3t_A 79 FQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERE 158 (355)
T ss_dssp HHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHC
T ss_pred HHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999987655432111 11223456778899999999999
Q ss_pred CCcccccccEEEEeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHh
Q 002303 481 DSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALS 560 (939)
Q Consensus 481 ~SiI~~lF~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~ 560 (939)
.|+|.++|+|++.++++|..|++.+.++|+|++|+|+||.....
T Consensus 159 ~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~------------------------------------ 202 (355)
T 3i3t_A 159 DSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFA------------------------------------ 202 (355)
T ss_dssp CSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC----------------------------------------
T ss_pred CCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccc------------------------------------
Confidence 99999999999999999999999999999999999999853100
Q ss_pred hhhccCCccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeec
Q 002303 561 TKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFG 640 (939)
Q Consensus 561 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 640 (939)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEeccCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCc
Q 002303 641 TPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDD 720 (939)
Q Consensus 641 ~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (939)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEecCCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCc
Q 002303 721 FQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKE 800 (939)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~ 800 (939)
...++|++||+.|+++
T Consensus 203 ----------------------------------------------------------------~~~~sl~~~L~~~~~~ 218 (355)
T 3i3t_A 203 ----------------------------------------------------------------GGKVSLRDCFNLFTKE 218 (355)
T ss_dssp -------------------------------------------------------------------CBHHHHHHHHHCC
T ss_pred ----------------------------------------------------------------cCccCHHHHHHHhCCc
Confidence 0135899999999999
Q ss_pred ccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccCCCCCceEEE
Q 002303 801 EPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVL 880 (939)
Q Consensus 801 E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL 880 (939)
|.|+++|+|+|++|++++.|+|++.|+++|+||+||||||.+++....|+.+.|.||++.|||++|+.... ....|+|
T Consensus 219 e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y~L 296 (355)
T 3i3t_A 219 EELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVYQL 296 (355)
T ss_dssp EEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEEEE
T ss_pred cccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC--CCcceEE
Confidence 99999999999999999999999999999999999999999998888999999999988899999987654 5679999
Q ss_pred EEEEEeeccCCCCeEEEEEEeCCCCEEEEcCCcceecCccccCCCceEEEEEEEecCC
Q 002303 881 YAISNHYGGMGGGHYTAFVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSDV 938 (939)
Q Consensus 881 ~AVinH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~~~~ 938 (939)
+|||+|.|++++|||+||+|. .++||+|||+.|+++++++|.+..||||||+|+++.
T Consensus 297 ~avv~H~G~~~~GHY~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 297 YALCNHSGSVHYGHYTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred EEEEEecCCCCCCeEEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCC
Confidence 999999999999999999998 567999999999999999999999999999998753
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=2e-63 Score=562.50 Aligned_cols=296 Identities=24% Similarity=0.406 Sum_probs=255.4
Q ss_pred cccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~ 415 (939)
.+|++||.|+||||||||+||||+|+|+|+++++..... ......++..+|+.||..|+.+. .+++|..|+..
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 75 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT------TSCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC------CCcccccHHHHHHHHHHHHhhcC-CCCCCHHHHhh
Confidence 478999999999999999999999999999998743111 01123468899999999998765 57899999988
Q ss_pred HhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeE
Q 002303 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (939)
Q Consensus 416 l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (939)
++. +.|.+++||||||||.+|||.||++++.. ...++|.++|+|+++++
T Consensus 76 ~~~--~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------------------------~~~s~i~~~F~g~~~~~ 124 (353)
T 1nb8_A 76 FGW--ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVSY 124 (353)
T ss_dssp HTC--CBTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------------------------TTTTHHHHHHCEEEEEE
T ss_pred cCC--CCCCcccchhHHHHHHHHHHHHHHHhcCC-----------------------------CccchhhhhceeEEEEE
Confidence 863 78999999999999999999999987531 13468999999999999
Q ss_pred EecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeE
Q 002303 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (939)
Q Consensus 496 i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e 575 (939)
++|..|++.+.++|+|++|+|+||..
T Consensus 125 i~C~~C~~~s~~~e~f~~LsL~i~~~------------------------------------------------------ 150 (353)
T 1nb8_A 125 IQCKEVDYRSDRREDYYDIQLSIKGK------------------------------------------------------ 150 (353)
T ss_dssp EEESSSCCEEEEEEEESCEEECCTTC------------------------------------------------------
T ss_pred EEeccCCCeeceeeeeEEEEEEECCC------------------------------------------------------
Confidence 99999999999999999999998731
Q ss_pred eecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhH
Q 002303 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (939)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 655 (939)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002303 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (939)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (939)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcccc
Q 002303 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (939)
Q Consensus 736 ~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck 815 (939)
.+|.+||+.|+.+|.|++++.|+|+.|+
T Consensus 151 ----------------------------------------------------~~l~~~L~~~~~~E~l~~~~~~~C~~c~ 178 (353)
T 1nb8_A 151 ----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEHG 178 (353)
T ss_dssp ----------------------------------------------------SBHHHHHHHHTCCEEECTTTCEECGGGC
T ss_pred ----------------------------------------------------cchHHHHHHhhCccccCCCccccCCcCc
Confidence 1578999999999999999999999996
Q ss_pred CcceeEEEEEeeeCCCeEEEEEeeeEecc--ccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeeccCCCC
Q 002303 816 KHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (939)
Q Consensus 816 ~~~~AtKk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (939)
++.|+|++.|+++|+||+||||||.|+. +...|+++.|.|| +.|||++|+.......+..|+|+|||+|+|++++|
T Consensus 179 -~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~G 256 (353)
T 1nb8_A 179 -LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGG 256 (353)
T ss_dssp -EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCC
T ss_pred -cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECC-CeeehhhhhcccCCCCCceEEEEEEEEEeCCCCCc
Confidence 6789999999999999999999999985 4578999999999 59999999987654467899999999999999999
Q ss_pred eEEEEEEe-CCCCEEEEcCCcceecCccccC---------------CCceEEEEEEEecC
Q 002303 894 HYTAFVDL-GHKRWFEFDDDRVYPVSEDNIK---------------TSAAYVLFYKRVSD 937 (939)
Q Consensus 894 HYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~---------------s~~AYvLFY~R~~~ 937 (939)
||+||+|+ .+++||.|||+.|+++++++|. +.+||||||+|++.
T Consensus 257 HY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 257 HYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp CEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred EEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECch
Confidence 99999997 6789999999999999988875 36899999999864
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.3e-62 Score=565.71 Aligned_cols=319 Identities=24% Similarity=0.365 Sum_probs=258.0
Q ss_pred cccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~ 415 (939)
..+++||.|+||||||||+||||+|+|+|+++|+..... .....+.....+++++|+.||..||.+. .+++|..|+.+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGA-LRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCC-C------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccc-cccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHH
Confidence 468899999999999999999999999999999863221 1111222345789999999999999865 88999999999
Q ss_pred HhhcCCccC------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccc
Q 002303 416 LANFAPQFS------GYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQ 489 (939)
Q Consensus 416 l~~~~p~F~------~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~ 489 (939)
++...|+|. +++||||||||.+|||.||++++.....+. .+..+..+|..+...+.++|.++|+
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~----------~e~~~~~~~~~~~~~~~s~i~~~F~ 158 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV----------KETDSSSASAATPSKKKSLIDQFFG 158 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------------------------CCHHHHHTC
T ss_pred HHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc----------cccchhhhhhhhccccCchhhhhcc
Confidence 999999998 599999999999999999999865432110 1112455788888888999999999
Q ss_pred EEEEeEEecCCCCCee--eeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCC
Q 002303 490 GQYRSMLVCPVCNKVS--VTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN 567 (939)
Q Consensus 490 G~~~s~i~C~~C~~~s--~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~ 567 (939)
|+++++++|..|++++ .++|+|++|+|+||..
T Consensus 159 G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~---------------------------------------------- 192 (404)
T 2ayn_A 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFINQE---------------------------------------------- 192 (404)
T ss_dssp EEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS----------------------------------------------
T ss_pred EEEEEEEEecCCCCccCceeeccCceEEeecCCC----------------------------------------------
Confidence 9999999999999994 8999999999998731
Q ss_pred ccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEec
Q 002303 568 HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL 647 (939)
Q Consensus 568 ~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 647 (939)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEec
Q 002303 648 SDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLD 727 (939)
Q Consensus 648 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (939)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCC
Q 002303 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPED 807 (939)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d 807 (939)
..+|++||+.|+.+| +.
T Consensus 193 -----------------------------------------------------------~~~l~~~L~~~~~e~-l~--- 209 (404)
T 2ayn_A 193 -----------------------------------------------------------VKYLFTGLKLRLQEE-IT--- 209 (404)
T ss_dssp -----------------------------------------------------------CCBHHHHHHHTTEEC-CC---
T ss_pred -----------------------------------------------------------cccHHHHHHHhcccc-ee---
Confidence 016889999998744 43
Q ss_pred CCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccc--cccccceeeecCCCCCCCCCcccccC--------------
Q 002303 808 MWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKN-------------- 871 (939)
Q Consensus 808 ~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~-------------- 871 (939)
|+|++|++.+.|+|++.|+++|+||+||||||.|+.. .+.|+.+.|.||. .|||++|+....
T Consensus 210 -~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~ 287 (404)
T 2ayn_A 210 -KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL-MLDMYELCTPELQEKMVSFRSKFKDL 287 (404)
T ss_dssp -CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCS-EEECGGGBCHHHHHHTTTTTGGGTCT
T ss_pred -ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCc-eeEHhHhcChhhhhhcchhhhHHhhh
Confidence 8999999999999999999999999999999999864 5689999999995 999999987420
Q ss_pred ----------------------------------CCCCceEEEEEEEEeec-cCCCCeEEEEEEeCCCCEEEEcCCccee
Q 002303 872 ----------------------------------SQLSNRYVLYAISNHYG-GMGGGHYTAFVDLGHKRWFEFDDDRVYP 916 (939)
Q Consensus 872 ----------------------------------~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~ 916 (939)
......|+|+|||+|.| ++++|||+||+|+.+++||+|||+.|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~ 367 (404)
T 2ayn_A 288 EDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSI 367 (404)
T ss_dssp TC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCC
T ss_pred hcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeeccccee
Confidence 12358899999999999 7999999999998688999999999999
Q ss_pred cCccccCCCc-------eEEEEEEEecC
Q 002303 917 VSEDNIKTSA-------AYVLFYKRVSD 937 (939)
Q Consensus 917 vs~~~v~s~~-------AYvLFY~R~~~ 937 (939)
+++++|.... ||||||+|++.
T Consensus 368 v~~~~v~~~~~g~~~~~aYiLfY~r~~~ 395 (404)
T 2ayn_A 368 VTPEDILRLSGGGDWHIAYVLLYGPRRV 395 (404)
T ss_dssp BCHHHHGGGGSSSSSCEEEEEEEECC--
T ss_pred cCHHHHHhhhCCCCCceEEEEEEEecCC
Confidence 9999998665 99999999863
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.2e-60 Score=561.00 Aligned_cols=315 Identities=30% Similarity=0.566 Sum_probs=265.1
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhccc-ccccCCCCCCchHHHHHHHHHHHHhcCCCCC--------
Q 002303 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQK-EINYENPLGLNGELALAFGDLLRKLWAPGGI-------- 405 (939)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~-~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~-------- 405 (939)
..+|++||.|+||||||||+||||+++|+|+++++...+. .....+ ...++.++|..++..||.....
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~---~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~ 213 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRS---PDKCFSCALDKIVHELYGALNTKQASSSST 213 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCC---TTTCHHHHHHHHHHHHHSCCCC--------
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCC---cccchHHHHHHHHHHHhhcccccccccccc
Confidence 4689999999999999999999999999999999854222 222222 2356899999999999974322
Q ss_pred -ccchHHHHHHH---hhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCC
Q 002303 406 -PVAPRMFKLKL---ANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARND 481 (939)
Q Consensus 406 -~i~P~~f~~~l---~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~ 481 (939)
.+.|..++..+ .+.++.|.+++||||||||.+||+.||++++....+. .+.+........
T Consensus 214 ~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~----------------~~~~~~~~~~~~ 277 (476)
T 3mhs_A 214 STNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA----------------KEVSRANNKQCE 277 (476)
T ss_dssp CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCSCC
T ss_pred cccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhccccc----------------ccccccccccCC
Confidence 46676666555 4889999999999999999999999999987644321 112233345567
Q ss_pred CcccccccEEEEeEEecCCCCCeee-eecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHh
Q 002303 482 SIIVDLCQGQYRSMLVCPVCNKVSV-TFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALS 560 (939)
Q Consensus 482 SiI~~lF~G~~~s~i~C~~C~~~s~-~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~ 560 (939)
++|.++|+|+++++++|..|++++. ++|+|++|+|+||..
T Consensus 278 s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~--------------------------------------- 318 (476)
T 3mhs_A 278 CIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDK--------------------------------------- 318 (476)
T ss_dssp SHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTC---------------------------------------
T ss_pred CcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhhh---------------------------------------
Confidence 8999999999999999999999974 599999999998621
Q ss_pred hhhccCCccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeec
Q 002303 561 TKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFG 640 (939)
Q Consensus 561 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 640 (939)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEeccCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCc
Q 002303 641 TPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDD 720 (939)
Q Consensus 641 ~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (939)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEecCCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCc
Q 002303 721 FQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKE 800 (939)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~ 800 (939)
.+|++||+.|+++
T Consensus 319 -------------------------------------------------------------------~sl~~~L~~~~~~ 331 (476)
T 3mhs_A 319 -------------------------------------------------------------------KKLYECLDSFHKK 331 (476)
T ss_dssp -------------------------------------------------------------------CBHHHHHHHHHCC
T ss_pred -------------------------------------------------------------------hHHHHHHHHhcCh
Confidence 2689999999999
Q ss_pred ccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEecc-ccccccceeeecCCCCCCCCCcccccCC-------
Q 002303 801 EPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLSNYVCCKNS------- 872 (939)
Q Consensus 801 E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~v~~~~~------- 872 (939)
|.|++++ |+|++|+.++.|+|++.|+++|+||+||||||.+.. +...|+++.|.|| ..|||++|+.....
T Consensus 332 E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~~~ 409 (476)
T 3mhs_A 332 EQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSENG 409 (476)
T ss_dssp EECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--CCC
T ss_pred hhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCC-CeeechhhcCccccccccccc
Confidence 9998655 999999999999999999999999999999999874 4578999999999 59999999986432
Q ss_pred -CCCceEEEEEEEEeeccCCCCeEEEEEEeCCCCEEEEcCCcceecCccccCCCceEEEEEEEec
Q 002303 873 -QLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 936 (939)
Q Consensus 873 -~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~~ 936 (939)
.....|+|+|||+|.|++++|||+||+|..+++||.|||+.|+++++++|.++.||||||+|++
T Consensus 410 ~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 410 KVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp BCCCEEEEEEEEEEEEECSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEeCCCCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 2467899999999999999999999999878899999999999999999999999999999986
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-60 Score=562.86 Aligned_cols=298 Identities=23% Similarity=0.398 Sum_probs=258.0
Q ss_pred cccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHH
Q 002303 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (939)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~ 413 (939)
...+|++||.|+||||||||+||||+++|+|+++++..... ......++..+|+.||..|+.+. .++.|..|+
T Consensus 170 ~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~ 242 (522)
T 2f1z_A 170 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLT 242 (522)
T ss_dssp TTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC------SSCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHH
T ss_pred cccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhcccc------CCcccchHHHHHHHHHHHHhcCC-CccCcHHHH
Confidence 34679999999999999999999999999999998643111 01123468899999999998765 678999998
Q ss_pred HHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEE
Q 002303 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (939)
Q Consensus 414 ~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~ 493 (939)
..++ .+.|.+++||||||||.+|||.||++++.. ...++|.++|+|+++
T Consensus 243 ~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------------------------~~~s~i~~lF~G~~~ 291 (522)
T 2f1z_A 243 KSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMV 291 (522)
T ss_dssp HHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEE
T ss_pred hhcC--CccCCCcccccHHHHHHHHHHHHHhhccCC-----------------------------ccccchhhheeEEEE
Confidence 8775 378999999999999999999999987531 134679999999999
Q ss_pred eEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 494 s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
++++|..|++.+.++|+|++|+|+||..
T Consensus 292 s~i~C~~C~~~s~~~e~f~~LsL~i~~~---------------------------------------------------- 319 (522)
T 2f1z_A 292 SYIQCKEVDYRSDRREDYYDIQLSIKGK---------------------------------------------------- 319 (522)
T ss_dssp EEECCSSSCCCCCEEEEESCEEECCTTC----------------------------------------------------
T ss_pred EEEEcCCCCceeeeeeeeEEEEEEeCCc----------------------------------------------------
Confidence 9999999999999999999999998631
Q ss_pred eEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCCh
Q 002303 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (939)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (939)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcc
Q 002303 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (939)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (939)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcc
Q 002303 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (939)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~ 813 (939)
.+|.+||+.|+.+|.|+++++|+|+.
T Consensus 320 ------------------------------------------------------~~l~~~L~~~~~~E~l~~~n~~~C~~ 345 (522)
T 2f1z_A 320 ------------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGE 345 (522)
T ss_dssp ------------------------------------------------------CBHHHHHHHHTCEEEECTTSCBCCGG
T ss_pred ------------------------------------------------------ccchHHHHHhhceeecCCcceeecCc
Confidence 15789999999999999999999999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEeeeEecc--ccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeeccCC
Q 002303 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMG 891 (939)
Q Consensus 814 Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~ 891 (939)
|+ ++.|+|++.|+++|+||+||||||.|+. ....|+++.|.|| ..|||++|+.......+..|+|+|||+|.|+++
T Consensus 346 c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~ 423 (522)
T 2f1z_A 346 HG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNH 423 (522)
T ss_dssp GC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEECSSS
T ss_pred CC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCC-CeecchhhhccccCCCCcEEEEEEEEEecccCC
Confidence 96 6899999999999999999999999985 4578999999999 599999999876544678999999999999999
Q ss_pred CCeEEEEEEe-CCCCEEEEcCCcceecCccccCC---------------CceEEEEEEEecC
Q 002303 892 GGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKT---------------SAAYVLFYKRVSD 937 (939)
Q Consensus 892 gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s---------------~~AYvLFY~R~~~ 937 (939)
+|||+||+|+ .+++||+|||+.|+++++++|.. .+||||||+|++.
T Consensus 424 ~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 424 GGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp CSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTS
T ss_pred CceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCc
Confidence 9999999997 67899999999999999988763 6799999999864
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=6.9e-60 Score=545.18 Aligned_cols=296 Identities=23% Similarity=0.339 Sum_probs=248.9
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCC----CchHHHHHHHHHHHHhcCCCCCccchH
Q 002303 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLG----LNGELALAFGDLLRKLWAPGGIPVAPR 410 (939)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~----~~~~l~~~l~~L~~~l~~~~~~~i~P~ 410 (939)
...+++||.|+||||||||+||||+++|+|+++|+..... .+..++.+ ...+++.+|+.||..||.+...+++|.
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~ 98 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPS-QGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 98 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGG-GCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccc-cccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHH
Confidence 4578999999999999999999999999999999864221 22222211 246899999999999999888899999
Q ss_pred HHHHHHhhcCCccC-------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCc
Q 002303 411 MFKLKLANFAPQFS-------GYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSI 483 (939)
Q Consensus 411 ~f~~~l~~~~p~F~-------~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~Si 483 (939)
.|+.+++...|+|. +++||||||||.+||+.||++++. ++
T Consensus 99 ~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------~~ 145 (415)
T 1vjv_A 99 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------KF 145 (415)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------------------------HH
T ss_pred HHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------------------------ch
Confidence 99999999999999 899999999999999999998742 56
Q ss_pred ccccccEEEEeEEecCCCCCee--eeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhh
Q 002303 484 IVDLCQGQYRSMLVCPVCNKVS--VTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALST 561 (939)
Q Consensus 484 I~~lF~G~~~s~i~C~~C~~~s--~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~ 561 (939)
|.++|+ +++++++|..|++++ .++|+|++|+|+||..
T Consensus 146 i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~---------------------------------------- 184 (415)
T 1vjv_A 146 SEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT---------------------------------------- 184 (415)
T ss_dssp HTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT----------------------------------------
T ss_pred HHHHHH-hheEEEEECCCCCCccccccccceeeeeccccc----------------------------------------
Confidence 999999 999999999999986 6999999999998731
Q ss_pred hhccCCccceeeeEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeecc
Q 002303 562 KCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGT 641 (939)
Q Consensus 562 ~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~ 641 (939)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeccCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCce
Q 002303 642 PLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDF 721 (939)
Q Consensus 642 P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (939)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEecCCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcc
Q 002303 722 QFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEE 801 (939)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E 801 (939)
..+|++||+.|+.+|
T Consensus 185 -----------------------------------------------------------------~~~l~~~L~~~~~e~ 199 (415)
T 1vjv_A 185 -----------------------------------------------------------------TNFMRNGLLEGLNEK 199 (415)
T ss_dssp -----------------------------------------------------------------CCBHHHHHHHHHEEC
T ss_pred -----------------------------------------------------------------cchHHHHHHHHhhhh
Confidence 016889999999754
Q ss_pred cCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccc--cccccceeeecCCCCCCCCCccccc---------
Q 002303 802 PLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCK--------- 870 (939)
Q Consensus 802 ~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~--------- 870 (939)
+. |+|+.|+..+.|+|++.|+++|+||+||||||.|+.. .+.|+.+.|.|| ..|||++|+...
T Consensus 200 -i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~r 273 (415)
T 1vjv_A 200 -IE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFP-FQLDVADMLTPEYAAEKVKVR 273 (415)
T ss_dssp --------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCC-SEEECGGGBCHHHHHHHHHHH
T ss_pred -hh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCC-cEeEhHHhcChhhhhhhhhhH
Confidence 42 8999999999999999999999999999999999864 568999999999 599999998641
Q ss_pred -----------------------------------------------------------------CCCCCceEEEEEEEE
Q 002303 871 -----------------------------------------------------------------NSQLSNRYVLYAISN 885 (939)
Q Consensus 871 -----------------------------------------------------------------~~~~~~~YdL~AVin 885 (939)
.......|+|+|||+
T Consensus 274 ~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~ 353 (415)
T 1vjv_A 274 DELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVIT 353 (415)
T ss_dssp HHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEE
T ss_pred HHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEE
Confidence 012458899999999
Q ss_pred eec-cCCCCeEEEEEEe--CCCCEEEEcCCcceecCccccCCCc-------eEEEEEEEec
Q 002303 886 HYG-GMGGGHYTAFVDL--GHKRWFEFDDDRVYPVSEDNIKTSA-------AYVLFYKRVS 936 (939)
Q Consensus 886 H~G-~l~gGHYtAy~k~--~~~~Wy~fnDs~Vs~vs~~~v~s~~-------AYvLFY~R~~ 936 (939)
|.| ++++|||+||+|+ .+++||+|||+.|+++++++|.... ||||||+|++
T Consensus 354 H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 354 HQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp EESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred ecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 999 7999999999998 6899999999999999999998665 9999999975
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.7e-58 Score=565.39 Aligned_cols=156 Identities=26% Similarity=0.407 Sum_probs=135.3
Q ss_pred CcccccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCC---------
Q 002303 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--------- 403 (939)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--------- 403 (939)
....+|++||.|+||||||||+||||+++|+|+++|+..... ....++.....++..+|+.|+..||++.
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~-~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~ 416 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEK-IFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESG 416 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHH-HHHHCCSCGGGCHHHHHHHHHHHHHSCC---------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhh-hhccccCCccccHHHHHHHHHHHHhcccccccccccc
Confidence 345789999999999999999999999999999999853221 1122444556789999999999999754
Q ss_pred -----------CCccchHHHHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHH
Q 002303 404 -----------GIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEY 472 (939)
Q Consensus 404 -----------~~~i~P~~f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~ 472 (939)
...++|..|+.+++..++.|.+++||||||||.+|||.||++++.
T Consensus 417 ~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~------------------------ 472 (854)
T 3ihp_A 417 DGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS------------------------ 472 (854)
T ss_dssp ------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT------------------------
T ss_pred ccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc------------------------
Confidence 348999999999999999999999999999999999999998732
Q ss_pred HHhhhccCCCcccccccEEEEeEEecCCCCCeeeeecCCeeEEeeCCCC
Q 002303 473 WRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPST 521 (939)
Q Consensus 473 w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~ 521 (939)
.++|.++|+|+++++++|..|++++.++++|++|+|+||..
T Consensus 473 --------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~ 513 (854)
T 3ihp_A 473 --------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMD 513 (854)
T ss_dssp --------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGG
T ss_pred --------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCcc
Confidence 35689999999999999999999999999999999999964
No 11
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=100.00 E-value=1.5e-36 Score=320.10 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=167.1
Q ss_pred CCCCCCCccEEEEEcchhHHHHHHhhccccC-----CccCCCCCCCCChhhhhhhhhcccCCCCCCCcCCCCccCCCeEE
Q 002303 87 GLFDDDDRQKVYLVPYRWWKESQILLAEKVG-----GVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYAL 161 (939)
Q Consensus 87 ~~~~~~~~~~~ylv~~~W~~~w~~~v~~~~~-----g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~~~~Dy~~ 161 (939)
.....|| .||+|+++||++|++||+.+.+ +.+...||||||++|+ . +.....||++|.++.||++
T Consensus 28 ~~l~~Gd--~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGPIDNs~L~--~------~~~~~~Lk~~l~e~~Dy~~ 97 (231)
T 3jyu_A 28 TTLQRGA--QWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLF--S------DPESQTLKEHLIDELDYVL 97 (231)
T ss_dssp CCCCTTC--EEEEEEHHHHHHHHHHHTSSSCCTTTTTCGGGCCCSBCCGGGE--E------ETTTTEECSSCCBTTTEEE
T ss_pred cCCCCCC--EEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHHh--C------cCCCcccccccccCCCEEE
Confidence 3678899 9999999999999999987643 3445569999999999 2 1225689999999999999
Q ss_pred cCHHHHHHHHHHcC---CCcce---eeccCCCCCCcceeeeeeEEEEeeecCC-CeEEEEEccCCCHHHHHHHHHHHcCC
Q 002303 162 VPEGMWLRALKWHN---DSKAA---VKDFGSSFAADEQDVFPLQIRLSVSQET-NSLLVKISLEDNKVDLYKRACNLFIS 234 (939)
Q Consensus 162 Vp~~~W~~l~~wYG---g~p~i---vi~~~~~~~~~~vEvYPl~l~l~~~~~~-~~~~~~~Sk~~ti~eL~~~v~~lf~i 234 (939)
||+++|++|++||| |||+| ||..+...+.+.||+||++|+++.+++. +.+++.||+.+|+.+|++++|++|+|
T Consensus 98 vp~~vW~~l~~wYG~~~gg~~I~R~vi~~~~~~~~~~vEvyP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i 177 (231)
T 3jyu_A 98 VPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNI 177 (231)
T ss_dssp EEHHHHHHHHHHHCBCTTCCCCEEEEEEECSSSCEEEECCSCEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTC
T ss_pred ECHHHHHHHHHHhCCCCCCCceEEEEeccCCCCCcceEEEecceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCC
Confidence 99999999999999 88999 8877766778999999999999998763 46679999999999999999999999
Q ss_pred Ccc-ceEEEeecCCccccccccccccccccccCCCceEEEEEe-ecCcccCC
Q 002303 235 VSE-MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ-VHGFSDSV 284 (939)
Q Consensus 235 ~~e-~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k-~dg~W~~~ 284 (939)
+.+ ++|||++++.++..+|.+.+.+|++++|.++|.|++|++ .||+||++
T Consensus 178 ~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~WP~~ 229 (231)
T 3jyu_A 178 PAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTWPRQ 229 (231)
T ss_dssp CTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCCCC-
T ss_pred CCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCCCcc
Confidence 987 799999999999999999889999999999999999999 79999975
No 12
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=100.00 E-value=4.2e-36 Score=314.02 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=161.5
Q ss_pred CCCCCCCccEEEEEcchhHHHHHHhhccccC-----CccCCCCCCCCChhhhhhhhhcccCCCCCCCcCCCCccCCCeEE
Q 002303 87 GLFDDDDRQKVYLVPYRWWKESQILLAEKVG-----GVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYAL 161 (939)
Q Consensus 87 ~~~~~~~~~~~ylv~~~W~~~w~~~v~~~~~-----g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~~~~Dy~~ 161 (939)
.....|| .|||||++||++|++||+.+.. |.+...||||||++|+ . +.....||++|.++.||++
T Consensus 19 ~~l~~Gd--~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGpIdNs~L~--~------~~~~~~Lk~~l~e~~Dy~~ 88 (217)
T 4a3p_A 19 TSLRKGD--TWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLL--K------DGDAQSLKEHLIDELDYIL 88 (217)
T ss_dssp CCCCTTC--EEEEEEHHHHHHHHHHHTCSTTCCTTTTCGGGCCCSBCCGGGB--C------CC---CBCSSCCBTTTEEE
T ss_pred cCCCCCC--EEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHhh--C------CCCCcccCcCcccCCCEEE
Confidence 4678899 9999999999999999987642 3445569999999999 2 2246799999999999999
Q ss_pred cCHHHHHHHHHHcC---CCcce---eeccCCCCCCcceeeeeeEEEEeeecCC-CeEEEEEccCCCHHHHHHHHHHHcCC
Q 002303 162 VPEGMWLRALKWHN---DSKAA---VKDFGSSFAADEQDVFPLQIRLSVSQET-NSLLVKISLEDNKVDLYKRACNLFIS 234 (939)
Q Consensus 162 Vp~~~W~~l~~wYG---g~p~i---vi~~~~~~~~~~vEvYPl~l~l~~~~~~-~~~~~~~Sk~~ti~eL~~~v~~lf~i 234 (939)
||+++|++|++||| |||+| ||..+.. +.||+||+.|+++.+++. ...++.+|+.+|+.+|++++|++|+|
T Consensus 89 vp~~vW~~l~~wYG~~~ggp~I~R~vi~~~~~---~~vEvyP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i 165 (217)
T 4a3p_A 89 LPTEGWNKLVSWYTLMEGQEPIARKVVEQGMF---CKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSI 165 (217)
T ss_dssp EEHHHHHHHHHHHCBCTTCCCCEEEEEEETTE---EEECCSCEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTC
T ss_pred ECHHHHHHHHHHhCCCCCCCCcceeEEecCCe---eEEEEeccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCC
Confidence 99999999999999 99999 7766542 889999999999988764 56789999999999999999999999
Q ss_pred Ccc-ceEEEeecCCccccccccccccccccccCCCceEEEEEe-ecCcccCC
Q 002303 235 VSE-MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ-VHGFSDSV 284 (939)
Q Consensus 235 ~~e-~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k-~dg~W~~~ 284 (939)
+.+ ++|||++++.++..+|++.++||++++|.++|.|++|++ .||+||++
T Consensus 166 ~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~WP~~ 217 (217)
T 4a3p_A 166 PDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRG 217 (217)
T ss_dssp CTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CCCC-
T ss_pred CCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCCCCC
Confidence 987 799999998999999999889999999999999999999 79999974
No 13
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.93 E-value=8.4e-27 Score=255.01 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=81.1
Q ss_pred ccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHH-HHHHHHhcCCCCCccchHHHHHH
Q 002303 337 LGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAF-GDLLRKLWAPGGIPVAPRMFKLK 415 (939)
Q Consensus 337 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l-~~L~~~l~~~~~~~i~P~~f~~~ 415 (939)
..++||.|+||||||||+||||+++|++.+.++.. ....+. ......+..+| .++++.|.. ..+.|..|...
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~-~~~~~~---~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~ 79 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLR-PKEKND---VEYYSETQELLRTEIVNPLRI---YGYVCATKIMK 79 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHC-CCCTTS---CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHH
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhC-CCCCCc---chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHH
Confidence 46799999999999999999999999999998743 211111 22234688899 899999964 78999999999
Q ss_pred HhhcCCccC-----CCCCCCHHHHHHHHHHHHH
Q 002303 416 LANFAPQFS-----GYNQHDSQEFLAFLLDGLH 443 (939)
Q Consensus 416 l~~~~p~F~-----~~~QQDA~EfL~~LLd~L~ 443 (939)
|++..|+|. +++||||+||+..||..|.
T Consensus 80 LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~ 112 (374)
T 2vhf_A 80 LRKILEKVEAASGFTSEEKDPEEFLNILFHHIL 112 (374)
T ss_dssp HHHHHHHHC--------CCCHHHHHHHHHTTTT
T ss_pred HHHHhHHHhcccCCCccccCHHHHHHHHHHHHh
Confidence 999999987 4999999999999998885
No 14
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=99.78 E-value=3.4e-19 Score=172.78 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=71.7
Q ss_pred CCCCCCCccEEEEEcchhHHHHHHhhccccCC-----ccCCCCCCCCChhhhhhhhhcccCCCCCCCcCCCCccCCCeEE
Q 002303 87 GLFDDDDRQKVYLVPYRWWKESQILLAEKVGG-----VLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYAL 161 (939)
Q Consensus 87 ~~~~~~~~~~~ylv~~~W~~~w~~~v~~~~~g-----~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~~~~Dy~~ 161 (939)
+...+|| .||||+++||++|++||+++..+ .+...||||||++|+ . +.....||++|++++||++
T Consensus 43 ~~l~~gd--~~YlIs~~W~~~W~~yv~~~~~~~~~~~~~~~~pGpIDNs~Ll--~------~~~~~~Lk~~L~e~~Dy~l 112 (141)
T 1w6v_A 43 TSLRKGD--TWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLL--K------DGDAQSLKEHLIDELDYIL 112 (141)
T ss_dssp SCCCTTC--EEEEEEHHHHHHHHHHHTCSTTCCSSTTCSTTCCCSBCCTTTB--C------SSCTTCBCSSCCTTTTEEE
T ss_pred cCCCCCC--EEEEECHHHHHHHHHHhcCCccccccccccCCCCCCCcCHHHh--C------cCccccccccccCCCCEEE
Confidence 3567888 99999999999999999886542 233469999999999 2 2234789999999999999
Q ss_pred cCHHHHHHHHHHcC---CCcce
Q 002303 162 VPEGMWLRALKWHN---DSKAA 180 (939)
Q Consensus 162 Vp~~~W~~l~~wYG---g~p~i 180 (939)
||+++|++|++||| |||+|
T Consensus 113 Vp~~vW~~L~~wYG~~~ggp~I 134 (141)
T 1w6v_A 113 LPTEGWNKLVSWYTLMEGQEPI 134 (141)
T ss_dssp ECHHHHHHHHHHSCBCTTCCCC
T ss_pred ECHHHHHHHHHHHCCCCCCCce
Confidence 99999999999999 88988
No 15
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=99.31 E-value=2.4e-11 Score=142.79 Aligned_cols=296 Identities=20% Similarity=0.203 Sum_probs=208.8
Q ss_pred EEEEccCCCHHHHHHHHHHHcCCCcc-ceEEEeecCCcccccccccccccccc--ccCCCceEEEEEeecCcccCCCCcc
Q 002303 212 LVKISLEDNKVDLYKRACNLFISVSE-MLYIWDFSGQTTQFLMNDRVTMSDDF--SAKPGEEVFLQLQVHGFSDSVGETN 288 (939)
Q Consensus 212 ~~~~Sk~~ti~eL~~~v~~lf~i~~e-~~RLW~~~~~~~~~lL~d~~~tL~d~--~l~~~q~IllE~k~dg~W~~~~~~~ 288 (939)
.+.+++.+++.+|...+++.+|+|++ ++++|.-...+....|++.+.|+.++ .|.+|+.|.+|..... +
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~--~------ 221 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPE--N------ 221 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECCGG--G------
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecCCc--c------
Confidence 46899999999999999999999975 79999876656667777677899999 9999999999953110 0
Q ss_pred ccccccccccccccCCcccccCCCCCCCccccCCCccccCCCCCCcccccccccccCCCcchHHHHHHHHhCChhHHHHH
Q 002303 289 DEMAEHYKIIDSICNGSVKINGSNDNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYF 368 (939)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~l 368 (939)
..... ..++.+-+++
T Consensus 222 ------~~~~y-----------------------------------------------------------~~v~~yy~~l 236 (530)
T 2ylm_A 222 ------DNSEL-----------------------------------------------------------PTAKEYFRDL 236 (530)
T ss_dssp ------GGSSS-----------------------------------------------------------CSHHHHHHHH
T ss_pred ------ccccC-----------------------------------------------------------CCHHHHHHHH
Confidence 00000 0001111111
Q ss_pred hh---------------hcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHHHhhcCCccCCCCCCCHHH
Q 002303 369 LG---------------DYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQE 433 (939)
Q Consensus 369 l~---------------~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~l~~~~p~F~~~~QQDA~E 433 (939)
.+ .+.-+++...+ -++++.++++.+.. .|.. | ++.+. .+|.|
T Consensus 237 ~nrv~V~f~~~~~~~~~~F~l~Ls~~~~---Y~~la~~va~~l~~---------dP~~----l-Rf~~~-~~~~~----- 293 (530)
T 2ylm_A 237 YHRVDVIFCDKTIPNDPGFVVTLSNRMN---YFQVAKTVAQRLNT---------DPML----L-QFFKS-QGYRD----- 293 (530)
T ss_dssp HHEEEEEEEETTSTTCCCEEEEEETTCC---HHHHHHHHHHHHTS---------CGGG----E-EEECC-CTTSC-----
T ss_pred hcceEEEEeecCCCCCCCeEEEECCCCC---HHHHHHHHHHHhCC---------Cchh----E-EEEec-ccccC-----
Confidence 11 12223333332 36777777777632 3544 2 34444 44544
Q ss_pred HHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeEEecCCCCCeeeeecCCee
Q 002303 434 FLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMY 513 (939)
Q Consensus 434 fL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~s~~~e~F~~ 513 (939)
.|-.. ...+.++.+.++|. .+.|+ ++++|++
T Consensus 294 ------------------~p~~~-------------------i~~~~~~~L~d~l~--------~~~~~----~~~~l~Y 324 (530)
T 2ylm_A 294 ------------------GPGNP-------------------LRHNYEGTLRDLLQ--------FFKPR----QPKKLYY 324 (530)
T ss_dssp ------------------SCCSB-------------------CCTTCCSCHHHHST--------TSCSS----SCCEEEE
T ss_pred ------------------CCCCc-------------------cccCCCCcHHHHhh--------cccCC----CCCeEEE
Confidence 11000 11233466777772 24454 4689999
Q ss_pred EEeeCCCC---CccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCC--ccceeeeEeecceeeeeccCC
Q 002303 514 LSLPIPST---TMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN--HEKLLVAEIYRSKIFRVLDEP 588 (939)
Q Consensus 514 LsL~iP~~---~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~--~~~l~~~e~~~~~~~~~~~~~ 588 (939)
..|+||.. +.+.+.|+++.. ...+.++.+.+||+|++.||++++.+..++++ ...|.+.|+++|+|+++|. +
T Consensus 325 evL~ipl~ElE~~r~~kv~w~~~--~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~ 401 (530)
T 2ylm_A 325 QQLKMKITDFENRRSFKCIWLNS--QFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-E 401 (530)
T ss_dssp EECSSCHHHHHSBCCEEEEEECT--TSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-T
T ss_pred EECCCCHHHHhhCceEEEEEECC--CCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-C
Confidence 99999998 889999998833 34466999999999999999999999998864 6789999999999999999 5
Q ss_pred ccccccccC--CCcEEEEEcCCC-----CCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhHHHHHHH
Q 002303 589 SDLLGLIRD--EDKLVAYRLPKD-----SETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKLFL 661 (939)
Q Consensus 589 ~~~~~~i~~--~d~i~~yel~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~~~~ 661 (939)
+.+++.|.+ ...+.++|+|.+ .++..++++.|...+. ...||+||++.+.+.-+..++++.+.
T Consensus 402 ~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~----------~~~~G~PF~~~v~~gEt~~~~k~Rl~ 471 (530)
T 2ylm_A 402 DELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEV----------FGTFGIPFLLRIHQGEHFREVMKRIQ 471 (530)
T ss_dssp TSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSST----------TCEEEEEEEEEEETTCCHHHHHHHHH
T ss_pred CcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCc----------ccccCCCeEEEecCCCcHHHHHHHHH
Confidence 678999988 889999999975 3344678888864221 24699999999977779999999998
Q ss_pred HhcC
Q 002303 662 KLLD 665 (939)
Q Consensus 662 ~~l~ 665 (939)
+++.
T Consensus 472 ~rlg 475 (530)
T 2ylm_A 472 SLLD 475 (530)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8775
No 16
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.60 E-value=0.012 Score=50.14 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=55.4
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++...++.++..+|+.+|++++....++|++++||.. ....|+| +.+|.++++.+|..|.+-++
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-----~G~~L~d-~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-----EGKPLED-QLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-----TTEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE-----CCEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 45677889999999999999999999999999999973 3345666 58999999999999888765
No 17
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.54 E-value=0.0058 Score=55.26 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=57.0
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee-cCccc
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV-HGFSD 282 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~-dg~W~ 282 (939)
..+++.+...+||.+|++++...++++++++||.. . ...|.|...+|.++++..+..|.+..+. .|.|+
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~----gk~L~D~~~tL~~ygI~~g~~l~l~~~~~gg~~~ 91 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY-M----EQLLTDDHCSLGSYGLKDGDMVVLLQKDNVGLRT 91 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE-T----TEEECCSSSBHHHHTCCTTEEEEECBCCCCCCSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE-C----CEECCCCcccHHHCCCCCCCEEEEEECCCCCCCC
Confidence 56789999999999999999999999999999973 2 2457666578999999999998888774 44443
No 18
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.36 E-value=0.017 Score=51.04 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=57.0
Q ss_pred eeeEEEEeee-cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 196 FPLQIRLSVS-QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 196 YPl~l~l~~~-~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
.|..+.|... ..+...++.+...+||.+||+++....|+|++++||+. ....|+| ..||.+.++++|..|-+
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-----~Gk~LkD-~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-----GGSVLKD-HISLEDYEVHDQTNLEL 90 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-----TTEECCT-TSBTGGGTCCTTCEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-----CCEEccC-cCCHHHcCCCCCCEEEE
Confidence 3444555444 45778899999999999999999999999999999984 3345777 48999999999887654
No 19
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=96.33 E-value=0.014 Score=52.96 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=54.5
Q ss_pred cceeeee---eEEEEeeecC---CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccc
Q 002303 191 DEQDVFP---LQIRLSVSQE---TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFS 264 (939)
Q Consensus 191 ~~vEvYP---l~l~l~~~~~---~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~ 264 (939)
+.-+.|| +.+++....- ...+++.+...+||.+|++++.+.+++|++.+| |.+. ..+++| +.+|.+.+
T Consensus 13 ~~~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~g----gkll~D-~~TL~~yg 86 (105)
T 4dbg_A 13 LKPEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIG----QRLARD-QETLHSHG 86 (105)
T ss_dssp -------CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEET----TEEECT-TCBTGGGT
T ss_pred ecCCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-Eecc----CeEccC-cCcHHHcC
Confidence 3345676 4455444321 257789999999999999999999999999999 7653 225555 58999999
Q ss_pred c-CCCceEEEEE
Q 002303 265 A-KPGEEVFLQL 275 (939)
Q Consensus 265 l-~~~q~IllE~ 275 (939)
+ ++|..+.+-+
T Consensus 87 I~~~G~t~hL~l 98 (105)
T 4dbg_A 87 VRQNGDSAYLYL 98 (105)
T ss_dssp CCSTTCEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 9 5888776654
No 20
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.32 E-value=0.017 Score=49.87 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=55.9
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.+.....+.++..+|+.+|++++.+.+++|++++||. + ....|.| +.+|.++++.++..|.+-++.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~-~----~g~~L~d-~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 11 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-E----TTEECCT-TSBTGGGTCCTTCEEEEECCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE-E----CCEECCC-CCCHHHcCCCCCCEEEEEEEC
Confidence 3456788999999999999999999999999999998 3 2345666 489999999999999988773
No 21
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=96.28 E-value=0.016 Score=53.55 Aligned_cols=72 Identities=7% Similarity=0.093 Sum_probs=60.5
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCC-------CceEEEEEeec
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKP-------GEEVFLQLQVH 278 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~-------~q~IllE~k~d 278 (939)
+....+++.+...+||.+||+++....++|++++||+ + ...+|+| .+||.++++.. +..|-+-++.+
T Consensus 9 r~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~----~Gk~LeD-~kTL~dy~I~~~ta~~q~~atl~Lvlr~~ 82 (118)
T 4ajy_B 9 RHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-K----DDQLLDD-GKTLGECGFTSQTARPQAPATVGLAFRAD 82 (118)
T ss_dssp EBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-E----TTEECCT-TSBTTTTTCCGGGSBTTBCEEEEEEECCS
T ss_pred cCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-e----CCeECCC-cCCHHHcCCCcCcccCCCCCEEEEEEecC
Confidence 3445678889999999999999999999999999999 4 3356766 58999999998 88888888888
Q ss_pred CcccC
Q 002303 279 GFSDS 283 (939)
Q Consensus 279 g~W~~ 283 (939)
|.|..
T Consensus 83 ~~fE~ 87 (118)
T 4ajy_B 83 DTFEA 87 (118)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 88753
No 22
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.27 E-value=0.016 Score=51.03 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=54.6
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++....+.++..+|+.+|++++.+.++++++++||.. ....|.| +.+|.++++..|..|.+-++
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-----~Gk~L~D-~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AGKQLED-GRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-----TTEECCT-TCBTGGGTCCTTCEEEEECC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE-----CCeECCC-cCcHHHCCCCCCCEEEEEEe
Confidence 35567889999999999999999999999999999983 3345666 48999999999998887654
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.27 E-value=0.013 Score=50.57 Aligned_cols=66 Identities=8% Similarity=0.077 Sum_probs=56.1
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.+.....+.++..+|+.+|++++++.+++|++++||+. ....|.| +.+|.++++.++..|.+-++.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-----~g~~L~d-~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AGKQLED-GRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-----TBEECCT-TCBTTTTTCCTTCEEEEEECC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-----CCeECCC-CCCHHHCCCCCCCEEEEEEec
Confidence 34566889999999999999999999999999999984 2345666 479999999999999998874
No 24
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.24 E-value=0.013 Score=51.40 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=54.7
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.++....+.++..+|+.+|++++.+.+++|++++||.. ....|.| +.+|.++++.++..|.+.++.
T Consensus 17 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-----~Gk~L~D-~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 17 LTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF-----AGKQLED-GRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE-----TTEECCT-TSBSGGGTCCTTCEEEEEC--
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE-----CCEECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 34567888999999999999999999999999999973 2345666 589999999999999988773
No 25
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.23 E-value=0.016 Score=51.49 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=54.1
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
..++.++..+||.+|++++....++|++++||. +. ...|+|...+|.++++..+..|.+.++.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY-YS----GIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE-ET----TEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-EC----CEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 678999999999999999999999999999997 32 3456664378999999999999888774
No 26
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.016 Score=51.94 Aligned_cols=66 Identities=9% Similarity=0.108 Sum_probs=55.7
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.+...+.+.++..+||.+|++++.+.+++|++++||. + ....|.| +.+|.++++..+..|.+-++.
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~----~Gk~L~D-~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-E----TTEECCT-TCBSGGGTCCTTEEEEEECBC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-E----CCEECCC-CCcHHHCCCCCCCEEEEEEec
Confidence 4556788999999999999999999999999999998 3 3345665 488999999999998887763
No 27
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.20 E-value=0.014 Score=50.76 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=55.3
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+...+.+.++..+|+.+|+++++...++|++++||.. ....|.| +.+|.++++..+..|.+-++
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-----~G~~L~d-~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-----SGKQMND-EKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-----TTEECCT-TSBGGGGTCCTTCEEEECCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-----CCeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 35667889999999999999999999999999999973 3345766 58999999999999888766
No 28
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=96.19 E-value=0.018 Score=51.33 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=51.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
..++.+...+||.+|++++...+|+|++++||....+......|.++.++|.+.++.+|..|.+.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 67899999999999999999999999999999854311111234344589999999999988764
No 29
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.13 E-value=0.016 Score=50.78 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=57.3
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecC
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHG 279 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg 279 (939)
.++...++.++..+|+.+|++++....++|++++||.. ....|.| +.+|.++++.+|..|.+-++.-|
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-----~Gk~L~D-~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-----SGKQMND-EKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-----TTEECCT-TSBTTTTTCCTTCEEEEECBCC-
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE-----CCeECCC-CCcHHHcCCCCCCEEEEEEECCC
Confidence 35567889999999999999999999999999999973 3456766 58999999999999999988443
No 30
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=96.11 E-value=0.024 Score=47.55 Aligned_cols=66 Identities=8% Similarity=0.050 Sum_probs=55.4
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.+.....+.++..+|+.+|++++.+.+++|++++||.. ....|.| +.+|.++++.+|..|.+.++.
T Consensus 8 ~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-----~g~~L~d-~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AGKQLED-GRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-----TTEECCT-TCBTGGGTCCTTCEEEEEECC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-----CCeECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 34567788999999999999999999999999999984 2345655 589999999999999888764
No 31
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.09 E-value=0.019 Score=49.93 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=54.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
+.....+.++..+|+.+|++++.+..++|++++||. + ....|.| +.+|.++++..+..|.+.++.
T Consensus 16 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~----~Gk~L~d-~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE-F----QGQVLQD-WLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE-E----TTEECCS-SSBHHHHTCCTTEEEEEEECS
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE-E----CCEEccC-CCCHHHCCCCCCCEEEEEEec
Confidence 455678899999999999999999999999999997 3 2345665 489999999999999888873
No 32
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=96.09 E-value=0.023 Score=47.66 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=55.0
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.+.....+.++..+|+.+|++++.+..++|++++||. + ....|.| +.+|.++++.++..|.+.++.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~----~g~~L~d-~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-Y----SGKQMND-EKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-E----TTEECCT-TSBGGGGTCCTTCEEEEEECC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-E----CCEECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 3456678899999999999999999999999999997 3 2345655 488999999999999888763
No 33
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.08 E-value=0.032 Score=47.12 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=52.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
++....+.++..+|+.+|++++....++|++++||. + ....|.| +.+|.++++..|..|.+..
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~----~gk~L~d-~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-Y----SGKILKD-DQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-E----TTEECCT-TSBTGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE-E----CCeEcCC-CCCHHHcCCCCCCEEEEEE
Confidence 556678899999999999999999999999999997 3 2345666 4899999999999887763
No 34
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.06 E-value=0.034 Score=48.57 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=54.6
Q ss_pred CeEEE-EEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecC
Q 002303 209 NSLLV-KISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHG 279 (939)
Q Consensus 209 ~~~~~-~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg 279 (939)
...++ .++..+|+.+|++++....++|++++||.. ....|.| +.+|.++++..+..|.+-++..|
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-----~gk~L~d-~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY-----RGKQLEN-GYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE-----TTEECCS-SSBHHHHTCCTTCEEEEEECCCC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE-----CCeECCC-CCCHHHCCCCCCCEEEEEEeCCC
Confidence 56788 599999999999999999999999999974 2345655 48999999999999988887544
No 35
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.05 E-value=0.022 Score=49.85 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=54.6
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
++...++.++..+|+.+|++++....++|++++||. +. ...|.| +.+|.++++..|..|.+..+.
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----Gk~L~D-~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FE----GKPLED-QLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SS----SSCCCT-TSBHHHHHCSTTCEEEEEEC-
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEEc
Confidence 456778899999999999999999999999999997 32 335655 489999999999999888773
No 36
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=96.04 E-value=0.021 Score=52.87 Aligned_cols=69 Identities=9% Similarity=0.089 Sum_probs=57.8
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccC-------CCceEEEEEeecCc
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK-------PGEEVFLQLQVHGF 280 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~-------~~q~IllE~k~dg~ 280 (939)
...+++.+...+||.+|+.++....++|++++||. +. ...|+| .++|.++++. .+..|-+-++.+|.
T Consensus 11 ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi-~~----Gk~LeD-~~TLsdy~I~~~~a~~q~~stL~L~lr~~g~ 84 (118)
T 2fnj_B 11 KTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY-KD----DQLLDD-GKTLGECGFTSQTARPQAPATVGLAFRADDT 84 (118)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBHHHHTCCTTTSBTTBCEEEEEEEBSSSC
T ss_pred CEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE-EC----CeECCC-CCCHHHcCcccccccCCCCCEEEEEecCCCc
Confidence 34578899999999999999999999999999998 43 346766 4899999999 67888888887777
Q ss_pred cc
Q 002303 281 SD 282 (939)
Q Consensus 281 W~ 282 (939)
|.
T Consensus 85 fe 86 (118)
T 2fnj_B 85 FE 86 (118)
T ss_dssp BC
T ss_pred ee
Confidence 74
No 37
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.00 E-value=0.032 Score=49.77 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=57.1
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCc--cccccccccccccccccCCCceEEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQT--TQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~--~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
+.......+....||.+|+.++..+|++|+..+||..+.... ....|.++..+|...++.+|..|.|+.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRW 91 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEe
Confidence 456788899999999999999999999999999998654321 233466777999999999999999883
No 38
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=95.99 E-value=0.026 Score=50.07 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=57.1
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecC
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHG 279 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg 279 (939)
.+...+.+.++..+||.+|++++.+.++++++++||. + ....|.| +.+|.++++..+..|.+-++.-|
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~-~----~G~~L~d-~~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-E----TTEECCT-TSBTGGGTCCTTCEEEEEECCCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE-E----CCEECCC-CCcHHHcCCCCCCEEEEEEEcCC
Confidence 3456788999999999999999999999999999998 3 3345665 47999999999999999988443
No 39
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=95.95 E-value=0.027 Score=48.01 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=54.7
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++..+++.++..+|+.+|++++++..++|++++||. + ....|.|. .++.++++.++..|-+-++
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~----~G~~L~d~-~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-F----EGQRIADN-HTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-E----TTEECCTT-CCHHHHTCCTTEEEEEEEC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-E----CCEEeCCC-CCHHHcCCCCCCEEEEEEe
Confidence 3456788999999999999999999999999999997 3 33456654 8999999999998887765
No 40
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=95.90 E-value=0.039 Score=48.19 Aligned_cols=65 Identities=6% Similarity=0.021 Sum_probs=52.6
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCcc--ccccccccccccccccCCCceEEE
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTT--QFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~--~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
.......|+..+||.+|+.++...+|+|++++||..+..... ..+++| +.+|.+.+++.|..|-|
T Consensus 14 ~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 14 MRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAN-DKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp CCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCT-TSBGGGGTCCTTCEEEE
T ss_pred CeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCC-CCCHHHCCCCCCCEEEE
Confidence 345679999999999999999999999999999996543322 234554 58999999999998844
No 41
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.86 E-value=0.038 Score=50.69 Aligned_cols=66 Identities=9% Similarity=0.109 Sum_probs=55.9
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.+...+.+.++..+||.+|+.+++..+++|++++||. + ....|.| +.+|.++++..+..|.+-++.
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~----~Gk~L~D-~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-E----TTEECCT-TSBTTTTTCCTTCEEEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-E----CCEECCC-CCcHHHCCCCCCCEEEEEEec
Confidence 3456788999999999999999999999999999998 3 3345666 479999999999999888763
No 42
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.86 E-value=0.025 Score=49.21 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=52.4
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
..+....+.++..+|+.+|++++....++|++++||. + ....|+| +.+|.++++..|..|.+.
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~----~Gk~L~D-~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-F----KGKVLVE-TSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-E----TTEECCT-TCBTTTTTCCTTEEEEEE
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-E----CCeECCC-cCCHHHCCCCCCCEEEEE
Confidence 3455678899999999999999999999999999997 3 2345655 489999999999888776
No 43
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.85 E-value=0.031 Score=49.27 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=53.2
Q ss_pred CCCeEEEEEccC-----CCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 207 ETNSLLVKISLE-----DNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 207 ~~~~~~~~~Sk~-----~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
......+.+... .||.+|++++....++|++++||. + ....|.|.+.+|.++++..+..|.+..
T Consensus 15 ~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~----~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 15 SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-F----KGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-E----TTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-E----CCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 355678888885 999999999999999999999997 3 234577766789999999999888874
No 44
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=95.82 E-value=0.041 Score=48.16 Aligned_cols=64 Identities=9% Similarity=0.075 Sum_probs=53.8
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+...+.+.++..+||.+|++++...++++++++||.. ....|.| +.+|.++++ .+..|.+-++
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-----~Gk~L~d-~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-----QGRVLQD-DKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-----TTEECCT-TSBGGGGTC-TTEEEEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-----CCeECCC-CCCHHHcCC-CCcEEEEEec
Confidence 35667889999999999999999999999999999973 3456766 589999999 7888877766
No 45
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=95.74 E-value=0.047 Score=47.55 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=52.2
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
.++....+.++..+|+.+|++++...+++|++++||.. ....|.| +.+|.++++ +|..|.+-.
T Consensus 25 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-----~Gk~L~D-~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 25 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-----QGRVLQD-DKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp TTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-----TTEECCT-TSBGGGGTC-TTEEEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-----CCEECCC-CCcHHHcCC-CCcEEEEEE
Confidence 35667889999999999999999999999999999983 3456766 589999999 787776643
No 46
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.74 E-value=0.031 Score=48.53 Aligned_cols=64 Identities=6% Similarity=0.074 Sum_probs=53.5
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccc-cccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFL-MNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~l-L~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+...++.++..+|+.+|++++....++|++++||.. . ... |+| +.+|.++++..|..|.+.++
T Consensus 19 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----Gk~lL~D-~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 19 NGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV-D----GIVILRE-DLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-T----TEECCCS-SSBHHHHTCCTTSCEEEEEC
T ss_pred CCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-C----CEEecCC-cCCHHHcCCCCCCEEEEEEc
Confidence 4567889999999999999999999999999999973 2 234 665 48999999999998877653
No 47
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.73 E-value=0.043 Score=49.07 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=52.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCC-ccccccccccccccccccCCCceEEEE
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQ-TTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~-~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
...++.+...+||.+|++++...+|+|++++||...... .....|.++.++|.+.++..|..|.+.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 468899999999999999999999999999999854211 111234344689999999999988664
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.69 E-value=0.024 Score=50.20 Aligned_cols=63 Identities=5% Similarity=-0.027 Sum_probs=53.6
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.....+.++..+|+.+|++++.+..++|++++||. +. ...|+| +.+|.++++.++..|.+-++
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL-LA----GAPLED-EATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE-ET----TEECCT-TSBHHHHTCCSSCEEEEECC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE-EC----CEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 46678899999999999999999999999999997 32 345655 48999999999999888766
No 49
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.63 E-value=0.037 Score=50.69 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=54.6
Q ss_pred CCCeEEEEEcc-CCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 207 ETNSLLVKISL-EDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 207 ~~~~~~~~~Sk-~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
+.....+.++. .+||.+|++++...+++|++++||.. ...+|+| +.+|.++++..+..|.+.++.
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~-----~Gk~L~D-~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG-----KAGFLKD-NMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC-----SSSBCCT-TSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE-----CCEECCC-CCcHHHCCCCCCCEEEEEEEc
Confidence 34567788997 99999999999999999999999973 2346666 589999999999999998874
No 50
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.54 E-value=0.071 Score=45.15 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=52.4
Q ss_pred CCCe-EEEE-EccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNS-LLVK-ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~-~~~~-~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
++.. .++. ++..+|+.+|++++....++|++++||.. . ...|.| +.+|.++++..|..|.+-++
T Consensus 11 ~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~-~----g~~L~d-~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 11 DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY-R----GKQMED-GHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----TEECCT-TCBTTTTTCCTTCEEEEEEC
T ss_pred CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE-C----CEECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 3444 3788 99999999999999999999999999973 2 345655 48999999999998887654
No 51
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.53 E-value=0.05 Score=46.36 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=53.2
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++....+.++..+|+.+|++++.+.++++++++||. + ....|.| +.+|.++++..|..|.+-++
T Consensus 15 ~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~----~gk~L~d-~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 15 LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL-F----KGKALAD-GKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE-E----TTEECCT-TSBGGGGTCCSSBCCEEECC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-E----CCeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 3456678899999999999999999999999999997 3 2345655 48899999999988877643
No 52
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=95.50 E-value=0.055 Score=48.26 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=56.1
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeec
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~d 278 (939)
.++....+.++..+|+.+|++++.+..++|++++||. + ....|.| +.+|.++++.+|..|.+..+.-
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~-~----~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE-E----TTEECCT-TSBTGGGTCCTTCEEEEEECCC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-E----CCEECCC-CCCHHHcCCCCCCEEEEEEeCC
Confidence 3456678899999999999999999999999999997 3 2345665 5899999999999999988743
No 53
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.49 E-value=0.065 Score=48.19 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=53.2
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+....+.++..+||.+|++++....++|++++||. + ....|.| +.+|.++++.+|..|.+..+
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~----~Gk~L~D-~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI-F----AGKILKD-QDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE-E----TTEEECT-TCCTGGGTCCTTCEEEEEEC
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE-E----CCEECCC-cCcHHHcCCCCCCEEEEEEc
Confidence 45678899999999999999999999999999997 3 2345655 48999999999999888754
No 54
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=95.46 E-value=0.051 Score=48.46 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=55.0
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++..+++.++..+|+.+|+++++...++|++++||.. ....|.| +.+|.++++..+..|-+-++
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-----~Gk~L~d-~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-----EGQRIAD-NHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-----TTEECCT-TCCHHHHTCCTTCEEEEEES
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-----CCeEcCC-CCCHHHCCCCCCCEEEEEEe
Confidence 34567889999999999999999999999999999973 3345665 48999999999998888765
No 55
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.46 E-value=0.056 Score=49.00 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=52.4
Q ss_pred EEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 211 LLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 211 ~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
..+.+...+||.+|++++...++++.+++||. + ....|+| +.+|.++++..+..|.+..+.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~----~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-F----AGKILKD-PDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE-E----TTEECCT-TSCHHHHTCCTTEEEEEEECC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-E----CCEECCC-cCcHHHcCCCCCCEEEEEEcC
Confidence 68899999999999999999999999999997 3 2345665 589999999999999888773
No 56
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.45 E-value=0.061 Score=48.31 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=52.6
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
...+.++..+|+.+|++++....++|++++||.. ....|+| +.+|.++++..+..|.+..+.
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~Gk~L~D-~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF-----AGKILKD-PDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-----TTEECCT-TSBHHHHTCCTTCEEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-----CCEECCC-cCcHHHCCCCCCCEEEEEEcC
Confidence 3688999999999999999999999999999973 2345665 489999999999999888763
No 57
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.055 Score=49.87 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=57.4
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecCcc
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFS 281 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg~W 281 (939)
+....++.++..+|+.+|++++....++|++++||. +. ...|.| +.+|.++++.++..|.+..+..|.+
T Consensus 18 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----Gk~L~D-~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 18 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-WA----GKQLED-GRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-EC----CEECCC-CCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 456788999999999999999999999999999997 32 335655 5899999999999999998854433
No 58
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=95.43 E-value=0.076 Score=45.73 Aligned_cols=64 Identities=6% Similarity=0.041 Sum_probs=53.3
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHH---cCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNL---FISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~l---f~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
++....+.++..+|+.+|++++... .+++++++||. + ....|.| +.+|.++++..|..|.+..+
T Consensus 14 ~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi-~----~Gk~L~D-~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 14 QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-Y----AGKILSD-DVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE-E----TTEECCT-TSBGGGGCCCTTSEEEEEEC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE-E----CCEECcC-CCCHHHcCCCCCCEEEEEEc
Confidence 4567789999999999999999997 78999999997 3 2345666 48999999999999888754
No 59
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.42 E-value=0.039 Score=49.54 Aligned_cols=72 Identities=8% Similarity=0.065 Sum_probs=57.1
Q ss_pred eeeEEEEeeecC--CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 196 FPLQIRLSVSQE--TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 196 YPl~l~l~~~~~--~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
-++++++. ... ...+++.+...+|+.+|++++.+.+++|++++||- | ....|+|. .+|.+.++..+..|++
T Consensus 16 ati~V~~~-~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~----~GKiL~D~-~TL~~y~I~~gsti~v 88 (100)
T 1wju_A 16 ATIEVFLP-PRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV-I----NKKQLQLG-KTLEEQGVAHNVKAMV 88 (100)
T ss_dssp EEEEEECC-TTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-E----TTEECCTT-SBHHHHTCCSSEEEEE
T ss_pred EEEEEEec-CCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-e----CCeECCCC-CcHHHcCCCCCCEEEE
Confidence 35565532 111 56789999999999999999999999999999996 4 34467664 8999999999999865
Q ss_pred E
Q 002303 274 Q 274 (939)
Q Consensus 274 E 274 (939)
-
T Consensus 89 l 89 (100)
T 1wju_A 89 L 89 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 60
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.38 E-value=0.066 Score=50.22 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=54.2
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeec
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~d 278 (939)
...+++.++..+||.+|++++...++++.+++||. + ....|+| +.+|.++++..+..|.+..+..
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~----~Gk~L~D-~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI-F----AGKILKD-QDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE-E----TTEEEST-TSCGGGTTCSSSEEEEEEEC--
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE-E----CCEEcCC-CCCHHHcCCCCCCEEEEEeccC
Confidence 55688999999999999999999999999999997 3 2345665 4899999999999998887743
No 61
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.28 E-value=0.061 Score=49.57 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=53.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeec
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~d 278 (939)
...++.++..+||.+|++++....+++++++||.. . ...|.| +.+|.++++..+..|.+-++.-
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~-~----Gk~L~D-~~tL~~y~i~~g~~i~lv~rl~ 109 (115)
T 1we7_A 46 QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY-E----GIFIKD-SNSLAYYNMASGAVIHLALKER 109 (115)
T ss_dssp EEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE-T----TEEECT-TSBHHHHTCCSSCEEEEEECCC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE-C----CEECCC-CCCHHHCCCCCCCEEEEEEEcC
Confidence 45678899999999999999999999999999973 2 335665 4899999999999998888743
No 62
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.25 E-value=0.07 Score=49.00 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=64.1
Q ss_pred eeeeEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 195 VFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 195 vYPl~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
=+.+.+++...+.....++.|+...|+.+|++.+-..+++|.+.+||- | .+..|+| +.||.+.++++|..|=|+
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI-y----~GKiLKD-~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR-Y----SGKILKN-NETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE-E----TTEEECS-SCCHHHHSCCSSCEEEEE
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE-E----CCeEcCC-cchHHHcCCCCCCEEEEE
Confidence 344667765566678899999999999999999999999999999986 4 4456777 479999999999999999
Q ss_pred Ee
Q 002303 275 LQ 276 (939)
Q Consensus 275 ~k 276 (939)
++
T Consensus 87 i~ 88 (118)
T 2daf_A 87 IF 88 (118)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 63
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.038 Score=50.20 Aligned_cols=64 Identities=6% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
++....+.+...+||.+|++++....+++++++||. + ....|.| +.+|.++++..|..|.+.++
T Consensus 10 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~----~Gk~L~D-~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 10 KKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLI-Y----SGKVLQD-SKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp TCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEE-E----TTEECCT-TSBTTTTTCCTTCEEEEECC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE-E----CCEECCC-cCCHHHcCCCCCCEEEEEEc
Confidence 456688899999999999999999999999999997 3 3446766 58999999999999998865
No 64
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.018 Score=51.89 Aligned_cols=62 Identities=10% Similarity=0.070 Sum_probs=52.4
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
.+....+.++..+||.+|++++....+++++++||.. ....|.| +.+|.++++..|..|.+-
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~Gk~L~D-~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY-----SGKILKD-DQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE-----TTEECCT-TSBTTTTTCCTTEEEEEC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE-----CCEECCC-cCcHHHCCCCCCCEEEEE
Confidence 5566778899999999999999999999999999983 3356766 589999999999888775
No 65
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.10 E-value=0.038 Score=49.08 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=53.8
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
...+.+.+...+||.+|++++....+++++++||.. ....|+| +.+|.++++..+..|.+.++.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-----~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF-----TGKILRD-QDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE-----TTEECCT-TSCHHHHTCCTTEEEECCBCC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-----CCEECCC-cCCHHHCCCCCCCEEEEEEeC
Confidence 567789999999999999999999999999999973 2345665 489999999999988877663
No 66
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.09 E-value=0.098 Score=47.84 Aligned_cols=65 Identities=8% Similarity=0.060 Sum_probs=55.1
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
+.....+.++..+|+.+|++++.+..+++++++||.. ....|.| +.+|.++++..+..|.+.++.
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-----~Gk~L~D-~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AGKQLED-GRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE-----TTEECCS-SCBTTTTTCCTTCEEEEEECC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE-----CCEECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 4567789999999999999999999999999999973 2345666 589999999999999888763
No 67
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=95.07 E-value=0.045 Score=59.89 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=52.2
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEee-cCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDF-SGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~-~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
.+...++.+...+|+.+|++++.+.++||++++||... + ++..|.| +.+|.+++++.|..|++.
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~---~Gk~l~D-~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKY---KGKTAAD-NVKISALELKPNFKLMMV 77 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBS---SSSBCCT-TSBTTSSCCC--CEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeeccc---CCcccCc-cccHHHcCCCCCCEEEEE
Confidence 45678899999999999999999999999999999831 1 2346766 478999999999999988
No 68
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.04 E-value=0.044 Score=48.90 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=51.8
Q ss_pred CCCeE-EEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSL-LVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~-~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
....+ .+.+...+|+.+|++++....+++++++||. + ....|+|. +|.++++..+..|++.
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~----~Gk~L~D~--tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM-V----KGGTLKDD--DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE-E----TTEECCSS--CCCSCCCCSSCEEECC
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-E----CCcCCCCC--CHHHCCCCCCCEEEEE
Confidence 34566 5899999999999999999999999999998 3 34467664 8999999999998887
No 69
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.00 E-value=0.13 Score=45.50 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=53.7
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHH---cCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNL---FISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~l---f~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
++...++.++..+||.+|++++... .++|++++||. + ....|+| +.+|.++++..|..|.+.++
T Consensus 9 ~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi-~----~Gk~L~D-~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 9 QQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI-Y----AGKILND-DTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp TCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE-E----TTEECCT-TSBGGGGTCCSSSEEEEEES
T ss_pred CCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE-E----CCEECCC-cCcHHHCCCCCCCEEEEEEe
Confidence 4566788999999999999999998 68999999997 3 2345666 48999999999999988865
No 70
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.93 E-value=0.078 Score=47.06 Aligned_cols=64 Identities=6% Similarity=-0.024 Sum_probs=50.9
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccc--cccccccccccccccCCCceEEEE
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQ--FLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~--~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
...+.+...+||.+|++++....++|++++||.......+. .+++| +++|.+.++..+..|.+.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D-~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE-DALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCS-SSBTTSSSCCTTCEEEEB
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCC-cCCHhHCCCCCCCEEEEE
Confidence 58899999999999999999999999999999854211111 23444 589999999999887665
No 71
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.77 E-value=0.038 Score=49.19 Aligned_cols=61 Identities=10% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
....+.+.++..+||.+|++++....++|++++||. + +...| +. .+|.++++..+..|.|.
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~----~Gk~L-dd-~tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM-Y----KGLVP-ED-KTLREIKVTSGAKIMVV 85 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-S----SSBCC-SS-SBHHHHCCCTTEEEEEC
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-E----CCeeC-Cc-CcHHHCCCCCCCEEEEE
Confidence 345678999999999999999999999999999998 3 23345 33 48999999999888776
No 72
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=94.72 E-value=0.038 Score=48.58 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=52.0
Q ss_pred CCCeEEE-EEccCCCHHHHHHHHHHHcCCCccceEEEee-cCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLV-KISLEDNKVDLYKRACNLFISVSEMLYIWDF-SGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~-~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~-~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
....+++ .+...+|+.+|++++....++|++++||... + ....|+| +.+|.++++..+..|++.
T Consensus 15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~---~Gk~L~D-~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKV---KGKPAEN-DVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEE---TTEECCT-TSBHHHHTCCTTEEEEEE
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeecc---CCcCcCC-CCCHHHcCCCCCCEEEEE
Confidence 3455677 8899999999999999999999999999731 1 2345665 478999999999988887
No 73
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=94.69 E-value=0.13 Score=47.98 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=51.3
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccc-cccccccccccccccCCCceEEEE
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQ-FLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~-~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
...+.+...+||.+|+.++...+|+|++++||......... ..|.++..+|.+.++..|..|.+-
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 57889999999999999999999999999999854311111 123334689999999999888766
No 74
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.64 E-value=0.11 Score=45.68 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=52.0
Q ss_pred eEEEEEccCCCHHHHHHHHHHHc--CCCccceEEEeecCCcccccccccccccccc--ccCCCceEEEEEeec
Q 002303 210 SLLVKISLEDNKVDLYKRACNLF--ISVSEMLYIWDFSGQTTQFLMNDRVTMSDDF--SAKPGEEVFLQLQVH 278 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf--~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~--~l~~~q~IllE~k~d 278 (939)
.+++.+...+||.+|++++...+ +++++++||. | ....|+|. .+|.++ ++.++..|.+-++.-
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi-~----~Gk~L~D~-~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI-Y----SGKLLLDH-QCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE-E----TTEECCSS-SCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE-E----CCEECcCc-CCHHHHhcCCCCCCEEEEEeCCC
Confidence 46666779999999999999999 9999999998 3 34567664 789999 999998888876643
No 75
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=94.62 E-value=0.18 Score=44.67 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=60.1
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe-
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ- 276 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k- 276 (939)
+.|++. ..+...+.+.+.+..++..|++..|+..+++++.+|++ +. ...|.+ +.|++++++..+..|-+-.+
T Consensus 8 i~ikVk-~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-Fd----G~~l~~-~~Tp~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 8 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FD----GQPINE-TDTPAQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp EEEEEE-CTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ET----TEECCT-TCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEE-CCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE-EC----CEEcCC-CCCHHHcCCCCCCEEEEEEec
Confidence 455542 34567789999999999999999999999999999998 43 334554 48999999999998766554
Q ss_pred ecCccc
Q 002303 277 VHGFSD 282 (939)
Q Consensus 277 ~dg~W~ 282 (939)
..|.++
T Consensus 81 ~GG~~~ 86 (94)
T 2io1_B 81 TGGVPE 86 (94)
T ss_dssp EESCCC
T ss_pred cCCCcc
Confidence 455443
No 76
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=94.60 E-value=0.15 Score=45.54 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=49.7
Q ss_pred EEEEEccCCCHHHHHHHH-HHHcCCCccceEEEeecCCcccccccccccccccccc-CCCceEEEEEe
Q 002303 211 LLVKISLEDNKVDLYKRA-CNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSA-KPGEEVFLQLQ 276 (939)
Q Consensus 211 ~~~~~Sk~~ti~eL~~~v-~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l-~~~q~IllE~k 276 (939)
+.+.++..+|+.+|++++ ....++|++++||. + .+..|.|. .+|.++++ ..|..|.+.+.
T Consensus 34 i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~----~Gk~L~D~-~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 34 IEHDFSPSDTILQIKQHLISEEKASHISEIKLL-L----KGKVLHDN-LFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE-E----TTEEECTT-CBGGGSCCBTTBCEEEEEEC
T ss_pred EEEecCCCChHHHHHHHHHHHhcCCChhhEEEE-E----CCEECcCc-CCHHHcCcCCCCCEEEEEEe
Confidence 444677999999999999 77889999999998 3 44567764 89999999 99999888754
No 77
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=94.60 E-value=0.08 Score=53.25 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=62.3
Q ss_pred eeeeeeEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEE
Q 002303 193 QDVFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVF 272 (939)
Q Consensus 193 vEvYPl~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Il 272 (939)
.+-|-++|.+- ..+....++.++..+||.+|++++....++|++++||. + ....|.| +.+|.++++.++..|.
T Consensus 101 ~d~~eMqI~VK-tl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~----~Gk~L~D-~~tL~dygI~~gstI~ 173 (189)
T 3q3f_A 101 TDHYGGQIFVK-TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKESTLH 173 (189)
T ss_dssp SCCCCEEEEEE-CTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-E----TTEECCT-TCBGGGGTCCTTCEEE
T ss_pred ccccceeeeee-cCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-E----CCEECCC-CCCHHHCCCCCCCEEE
Confidence 34454555542 34566788999999999999999999999999999998 3 3456766 5899999999999999
Q ss_pred EEEee
Q 002303 273 LQLQV 277 (939)
Q Consensus 273 lE~k~ 277 (939)
+-++.
T Consensus 174 Lvlrl 178 (189)
T 3q3f_A 174 LVLRL 178 (189)
T ss_dssp ECCCC
T ss_pred EEEEc
Confidence 88773
No 78
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.44 E-value=0.09 Score=47.17 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=52.3
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
.+..+++.+...+||.+|++++....++|++++||.. ....|+| +.+|.+.++..+..|-|.
T Consensus 37 ~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~-----~Gk~L~D-~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 37 LGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK-----WYTIFKD-HVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE-----TTEECCS-SCBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE-----CCEECCC-CCCHHHcCCCCCCEEEEE
Confidence 3567889999999999999999999999999999973 2446766 489999999988877654
No 79
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.42 E-value=0.075 Score=47.74 Aligned_cols=65 Identities=6% Similarity=-0.012 Sum_probs=51.7
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
....+++.+...+|+.+|+.++....+||++++||..+.. ..|+| +.+|.++++..|..+.+-..
T Consensus 17 ~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~----gkL~D-~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 17 RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKT----GDVED-STVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSS----SCCCT-TSBHHHHCCCSEEEEEECCS
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCC----CCCCC-cCCHHHcCCCCCCEEEEEec
Confidence 4566788999999999999999999999999999954322 22555 57899999999977766543
No 80
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.31 E-value=0.18 Score=49.02 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=56.7
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.++...++.++..+|+.+|++++....++|++++||. + ....|.| +.+|.++++..|..|.+-++.
T Consensus 89 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~----~G~~L~d-~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 89 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-F----EGKPLED-QLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-E----TTEECCT-TSBGGGGTCCTTCEEEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-E----CCeecCC-CCCHHHcCCCCCCEEEEEEec
Confidence 3467788999999999999999999999999999997 3 3356766 489999999999999988873
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=94.12 E-value=0.16 Score=50.14 Aligned_cols=67 Identities=9% Similarity=0.113 Sum_probs=56.5
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeec
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~d 278 (939)
.++...++.++..+||.+|++++....++|++++||. +. ...|+| +.+|.++++..+..|.+.++..
T Consensus 28 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~----g~~L~d-~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 28 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TCBTGGGTCCTTCEEEEEECCC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-EC----Cccccc-cCCHhHcCCcccceeeeeeccc
Confidence 4556788999999999999999999999999999998 32 345666 5899999999999998887743
No 82
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=94.12 E-value=0.17 Score=50.08 Aligned_cols=68 Identities=9% Similarity=0.084 Sum_probs=57.5
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecC
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHG 279 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg 279 (939)
.++...++.+...+|+.+|++++....++|++++||.. ....|+| +.+|.++++..|..|.+-++.-|
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~Gk~L~D-~~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-----AGKQLED-GRTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE-----TTEECCT-TSBGGGGTCCTTCEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE-----CCccccC-cCcHHHcCCCCCCEEEEEEEecc
Confidence 44567889999999999999999999999999999983 3345766 58999999999999999888433
No 83
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.11 E-value=0.11 Score=47.21 Aligned_cols=64 Identities=8% Similarity=-0.040 Sum_probs=54.3
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
++..+.+.++..+||.+|+.++....+++++++||.. ....|.| +.+|.++++..|..|.+..+
T Consensus 32 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-----~Gk~L~D-~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 32 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF-----SGRPLTD-KMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE-----TTEECCT-TSHHHHCCCSSSCEEEEECC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE-----CCEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 4566789999999999999999999999999999983 2345665 58999999999999988865
No 84
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.092 Score=45.89 Aligned_cols=64 Identities=8% Similarity=0.148 Sum_probs=51.3
Q ss_pred CCCeEEEE--EccCCCHHHHHHHH-HHHcCCCccceEEEeecCCcccccccccccccccccc-CCCceEEEEEe
Q 002303 207 ETNSLLVK--ISLEDNKVDLYKRA-CNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSA-KPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~--~Sk~~ti~eL~~~v-~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l-~~~q~IllE~k 276 (939)
.+...++. ++..+||.+|++++ ....++|++++||+ | .+..|.|. .+|.++++ .+|..|.+-..
T Consensus 10 ~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~----~Gk~L~D~-~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 10 QAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL-L----KGKVLHDN-LFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp SSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEE-E----TTEECCTT-CBHHHHCCCGGGCEEEEEEC
T ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEE-E----CCEECcCc-CCHHHcCCCCCCCEEEEEcC
Confidence 34445554 55999999999999 88999999999998 4 45567764 78999999 68888888754
No 85
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=93.83 E-value=0.34 Score=42.63 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=56.8
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+.|++. ..++..+.+.+.+..++..|++..|+..++++..+|+. |. ...|.+ +.|++++++..|..|-+-.+
T Consensus 6 i~ikVk-~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~-Fd----G~~l~~-~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 6 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FD----GQPINE-TDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp EEEEEE-CTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE-ET----TEECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEE-CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-EC----CEEcCC-CCCHHHcCCCCCCEEEEEEe
Confidence 445543 34567889999999999999999999999999999998 43 334544 47999999999987765544
No 86
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.01 E-value=0.51 Score=40.69 Aligned_cols=70 Identities=9% Similarity=-0.047 Sum_probs=53.6
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+|+..+...|...+++.+|...+.. .+.+...++|..-.-..... ..|.++||.+++|.++..++||.+
T Consensus 14 lpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~-~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 14 TPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVT-QLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGG-GSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCc-CCCCCCCHHHCCCCCCCEEEEEec
Confidence 47888889999999999999999987 45666778887432211111 236779999999999999999965
No 87
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=92.97 E-value=0.36 Score=46.13 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=55.3
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.++....+.++..+|+.+|+++++...++|++++||. +. ...|.| +.+|.++++..+..|.+..+.
T Consensus 84 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~----g~~L~d-~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 84 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTGGGTCCTTCEEEEEECC
T ss_pred cCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-EC----CEECCC-CCCHHHcCCCCCCEEEEEEec
Confidence 3456788999999999999999999999999999997 32 345655 589999999999999888763
No 88
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=92.75 E-value=0.38 Score=46.67 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=55.7
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEee-cCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDF-SGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~-~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++...++.++..+|+.+|++++...+++|++++||..+ .+ ..|+| +.+|.++++..|..|.+-++
T Consensus 10 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g----~~L~d-~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 10 LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSG----VALQD-RVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTC----CBCCT-TSCGGGGTCCTTCEEEEEEC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCC----CCCCC-CCCHHHcCCCCCCEEEEEcc
Confidence 346678899999999999999999999999999999854 22 34655 58999999999999988876
No 89
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=92.59 E-value=0.39 Score=45.92 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=54.9
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
.++...++.++..+|+.+|++++...+++|++++||.. . ...|.| +.+|.++++..+..|.+..+.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~-~----g~~L~d-~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----TEECCT-TSBTGGGTCCTTCEEEEEECC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE-C----CeECcC-cccHHHhccCCCCeeEEEeec
Confidence 34567789999999999999999999999999999973 2 234655 589999999999998887764
No 90
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.57 E-value=0.37 Score=43.66 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=50.1
Q ss_pred CeEEEEEcc---------CCCHHHHHHHHHHHc--CCCccc-eEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 209 NSLLVKISL---------EDNKVDLYKRACNLF--ISVSEM-LYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 209 ~~~~~~~Sk---------~~ti~eL~~~v~~lf--~i~~e~-~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
...++.|.. .+||.+|++++.... ++++++ +||. + ....|+| +.+|.++++..+..|.+-.+
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi-~----~Gk~L~D-~~tL~~y~i~~g~~i~lv~~ 99 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI-Y----CGRKLKD-DQTLDFYGIQPGSTVHVLRK 99 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE-E----TTEECCT-TCBHHHHTCCTTCEEEEEES
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEE-E----CCeECCC-CCcHHHcCCCCCCEEEEEeC
Confidence 466777544 499999999999999 999999 9997 3 3345666 48999999999998887754
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=92.39 E-value=0.14 Score=44.51 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=48.7
Q ss_pred EEEE-EccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 211 LLVK-ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 211 ~~~~-~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
..+. +...+|+.+|+.++.+..+++++++||..-+ ..+...+.+.+++|.++++..|..|.+.
T Consensus 12 ~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~-p~k~l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 12 HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGY-PPECLDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESS-CCCCCCCCCSSCBTTTSSCCTTCEEECC
T ss_pred EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCC-CCcccccCCCCCCHHHcCCCCCCEEEEE
Confidence 3466 8899999999999999999999999886321 1121123445689999999999988887
No 92
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.34 E-value=0.29 Score=44.34 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=54.7
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCcc---------------ceEEEeecCCccccccccccccccccccCCCce
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSE---------------MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEE 270 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e---------------~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~ 270 (939)
-+...+++.+...+||.+|++.+...++++++ ++||. + ....|.|+.++|.+.++.++..
T Consensus 15 l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li-~----~Gk~L~dD~~tL~dygI~~g~~ 89 (105)
T 1v2y_A 15 MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT-S----AGEKLTEDRKKLRDYGIRNRDE 89 (105)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE-S----SSCEECCSSSBHHHHTCCSSEE
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE-e----CCcCccCCcCCHHHcCCCCCCE
Confidence 34677889999999999999999999999863 45776 4 2345666568999999999999
Q ss_pred EEEEEeecC
Q 002303 271 VFLQLQVHG 279 (939)
Q Consensus 271 IllE~k~dg 279 (939)
|.+-.+--|
T Consensus 90 l~lv~~lr~ 98 (105)
T 1v2y_A 90 VSFIKKLGQ 98 (105)
T ss_dssp EEEEECSCS
T ss_pred EEEEehhcc
Confidence 888776433
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=92.01 E-value=0.65 Score=38.74 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=54.1
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
+.|++. ..++..+.+.+.+..++..|++..|+..++++..+|++ +. +..|.+ +.|++++++..|..|-+
T Consensus 2 i~lkV~-~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-fd----G~~l~~-~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FD----GQPINE-TDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEE-CTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEE-ET----TEECCT-TCCTTTTTCCTTEEEEE
T ss_pred EEEEEE-CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE-EC----CEEcCC-CCCHHHcCCCCCCEEEE
Confidence 345542 34567889999999999999999999999999999998 43 334544 47999999998876643
No 94
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=91.74 E-value=0.31 Score=48.01 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=54.3
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++....+.++..+|+.+|++++....++|++++||. + ....|+| +.+|.+.++..+..|.+-++
T Consensus 104 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~----~g~~L~D-~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 104 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-E----TTEECCT-TSBSGGGTCCTTCEEEECC-
T ss_pred ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEE-E----CCccCCC-CCcHHHhCCCCCCEEEEEEe
Confidence 3456788999999999999999999999999999987 3 2345666 57999999999999888765
No 95
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=90.82 E-value=0.035 Score=46.82 Aligned_cols=63 Identities=8% Similarity=0.064 Sum_probs=51.5
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+....+.++..+|+.+|++++....++|++++||. +. ...|.| +.+|.++++.+|..|.+-++
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~----gk~L~d-~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 10 SYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI-FA----GKELPN-HLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 44567888899999999999999999999999996 32 345655 48899999999988877655
No 96
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.24 E-value=0.56 Score=41.27 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=50.2
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+.....+.++..+||.+|++++.... ++++||. + ....|.|.+.+|.++++..+..|.+..+
T Consensus 16 ~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi-~----~Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 16 NDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI-Y----QGRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEE-E----TTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE-E----CCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 44567889999999999999998887 7888886 3 3446777558999999999998888754
No 97
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=91.20 E-value=1.1 Score=39.53 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=55.6
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
+.|++. ..+...+.+.+.+..++..|++..|+..+++.+.+|++ |. ...|.+ +.|+.++++..+..|-+-.
T Consensus 18 i~ikV~-~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-fd----G~~l~~-~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 18 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FD----GQPINE-TDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp EEEEEE-CTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE-ET----TEECCT-TCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEE-CCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE-EC----CEEcCC-CCCHHHcCCCCCCEEEEEe
Confidence 455543 34566789999999999999999999999999999998 43 334544 4799999999888775544
No 98
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.05 E-value=0.29 Score=44.36 Aligned_cols=65 Identities=9% Similarity=-0.053 Sum_probs=50.2
Q ss_pred EEEEEc-cCCCHHHHHHHHHHHcCCCccceEEEeecCCc-----ccc--cc---ccccccccccccCCCceEEEEEe
Q 002303 211 LLVKIS-LEDNKVDLYKRACNLFISVSEMLYIWDFSGQT-----TQF--LM---NDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 211 ~~~~~S-k~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~-----~~~--lL---~d~~~tL~d~~l~~~q~IllE~k 276 (939)
..+.+. ..+|+.+|++++...++++++++||... +.. ... .| .+...+|.++++..|..|.+...
T Consensus 19 ~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~-~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 19 ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN-RNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp EEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS-GGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC-CccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 468888 9999999999999999999999999733 220 110 22 34568999999999999888744
No 99
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=90.90 E-value=0.043 Score=51.66 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee-cC
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV-HG 279 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~-dg 279 (939)
++...++.++..+||.+|+.++...+++|++++||. + ....|+| +.+|.+.++.+|..|.+-++. +|
T Consensus 9 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~----~Gk~L~D-~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 9 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE-E----CCEECCC-CCchhhhccCCCCEEEEEEEcCCC
Confidence 345577889999999999999999999999999998 3 3345666 589999999999999888884 44
No 100
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=90.66 E-value=1.5 Score=39.56 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=56.5
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
+.|++.- +...+.+.+.+..++..|++..|+..+++...+|++. . ...|.+ +.|+.++++..+..|-+-.
T Consensus 32 I~IkV~~--~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-d----G~rl~~-~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 32 INLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-D----GIRIQA-DQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp EEEEEEC--SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-T----TEECCT-TCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEec--CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-C----CeEcCC-CCCHHHcCCCCCCEEEEEe
Confidence 5666643 6678899999999999999999999999999999984 3 334544 4799999999888776544
No 101
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=90.22 E-value=1.2 Score=38.00 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=53.7
Q ss_pred eEEEEeeecCCC-eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 198 LQIRLSVSQETN-SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 198 l~l~l~~~~~~~-~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
+.|++. ..+.. .+.+.+.+..++..|++..|+..+++.+.+|++. . ...|.+ +.|+.++++..|..|-+
T Consensus 8 i~ikV~-~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-d----G~~l~~-~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 8 LRLRVQ-GKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-D----GTKLSG-KELPADLGLESGDLIEV 77 (79)
T ss_dssp EEEEEE-CSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-T----TEECCS-CCCHHHHTCCTTCEEEE
T ss_pred EEEEEE-eCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-C----CEEcCC-CCCHHHcCCCCCCEEEE
Confidence 445542 34454 7899999999999999999999999999999984 3 334544 47999999998887643
No 102
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=89.85 E-value=0.06 Score=52.25 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe-ecC
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ-VHG 279 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k-~dg 279 (939)
++...++.++..+||.+|+.++...+++|++++||. + ....|.| +.+|.+.++.++..|.+-++ .+|
T Consensus 9 ~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~----~Gk~L~D-~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 9 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-E----CCEEccc-cCcHHHcCCCCCCEEEEEeeccCC
Confidence 345677889999999999999999999999999997 3 3345666 48899999999999888887 344
No 103
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=89.77 E-value=1.7 Score=39.84 Aligned_cols=72 Identities=8% Similarity=0.104 Sum_probs=56.8
Q ss_pred eeEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 197 Pl~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
.+.|++. ..+...+.+.+.+..++..|++..|+..+++...+|++. . ...|.+ +.|+.++++.++..|-+-.
T Consensus 40 ~I~LKV~-~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF-D----G~rI~~-~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 40 YIKLKVI-GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-E----GQRIAD-NHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp EEEEEEE-CTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE-T----TEECCT-TCCTTTTTCCTTCEEEEEE
T ss_pred eEEEEEE-cCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE-C----CeECCC-CCCHHHcCCCCCCEEEEEe
Confidence 3555652 345677899999999999999999999999999999994 3 334544 5899999999998875543
No 104
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=89.65 E-value=0.76 Score=41.05 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=45.2
Q ss_pred eEEEEEccCCCHHHHHHHHHHHc-CCC-ccceEEEeecCCcccccccccccccccc--ccCCCceEEE
Q 002303 210 SLLVKISLEDNKVDLYKRACNLF-ISV-SEMLYIWDFSGQTTQFLMNDRVTMSDDF--SAKPGEEVFL 273 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf-~i~-~e~~RLW~~~~~~~~~lL~d~~~tL~d~--~l~~~q~Ill 273 (939)
.+++.+...+||.+|++++...+ +++ ++++||. | ....|+| +.+|.++ ++..+..|-|
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI-y----~Gk~L~D-~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV-Y----SGRLLPD-HLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE-E----TTEEECT-TSBTHHHHTTTCSEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE-E----CCEECCC-CCCHHHHhcCCCCCCEEEe
Confidence 56888899999999999999864 555 5999997 3 3456766 4789999 9887776543
No 105
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.21 E-value=1 Score=40.64 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=56.4
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+.|++. ..+...+.+.+.+..++..|++..|+..++++..+|++ |.+ ..|.+ +.|+.++++..+..|-+-.+
T Consensus 25 I~IkVk-~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~-FdG----~~l~~-~~Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 25 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDG----QPINE-TDTPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp EEEEEE-CSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE-SSS----SBCCT-TSCTTTTTCCTTEEEEECCC
T ss_pred EEEEEE-CCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-ECC----EEcCC-CCCHHHcCCCCCCEEEEEEe
Confidence 555553 34567789999999999999999999999999999998 432 34544 47999999998887765543
No 106
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=89.15 E-value=0.87 Score=49.14 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=53.0
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+.....+.++..+||.+|++++....+++++++||.. ....|.| +.+|.++++..+..|.+.++
T Consensus 242 ~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~-----~Gk~L~D-~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 242 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AGKQLED-GRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-----TTEECCT-TSBTGGGTCCTTCEEEEEC-
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe-----CCeecCC-CCCHHHcCCCCCCEEEEEEe
Confidence 4566789999999999999999999999999999973 2345665 58999999999998877643
No 107
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=88.74 E-value=0.38 Score=41.24 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=47.3
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
...+.++..+|+.+|++++.+.++++.+...|..-+.. ..++..+.+.++.+++|..|+.|.++
T Consensus 15 ~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p-~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 15 VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK-TGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG-GGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC-CCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 45567899999999999999999999777655422221 23332336789999999999999876
No 108
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=88.52 E-value=1.2 Score=41.60 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=55.4
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCcccccc--ccccccccccccCCCceEEEEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLM--NDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL--~d~~~tL~d~~l~~~q~IllE~ 275 (939)
|.|| .+|+..+...|...+|+.+|+..|... +.+...+.|..-+- ...+ .|.+++|.+++|.....++|+.
T Consensus 46 IqIR---lPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fP---rk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 46 LMLR---YPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFP---RRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEE---CTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSS---CCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEE---CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCC---CcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 4444 478888999999999999999999776 66667788874322 2223 4667999999999988888885
Q ss_pred e
Q 002303 276 Q 276 (939)
Q Consensus 276 k 276 (939)
.
T Consensus 119 ~ 119 (124)
T 1wj4_A 119 S 119 (124)
T ss_dssp C
T ss_pred c
Confidence 4
No 109
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=88.43 E-value=2.2 Score=38.66 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=55.4
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccc--cccccccccccCCCceEEEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE 274 (939)
+.|| .+|+..+...|...+|+.+|...+....+.+...+.|..-.. ...+. |.++||++++|.+...++++
T Consensus 16 IqIR---lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fP---rk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 16 IQFR---LPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFP---RREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp EEEE---CSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSS---CCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred EEEE---CCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCC---CcCCcccccCCCHHHCCCCCceEEEEE
Confidence 4455 478888999999999999999999888777767777775332 22333 56799999999988888888
No 110
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.28 E-value=2.6 Score=38.69 Aligned_cols=61 Identities=10% Similarity=0.115 Sum_probs=47.2
Q ss_pred CCeEEEEEccCCCHHHHHHHHHH------HcCC--CccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 208 TNSLLVKISLEDNKVDLYKRACN------LFIS--VSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~------lf~i--~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
+...++.+...+||.+|++++.. .-++ +++++||- | ....|+|. .+|.++++..+..+.|.
T Consensus 26 G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI-y----~GK~LeD~-~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 26 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-Y----QGRFLHGN-VTLGALKLPFGKTTVMH 94 (116)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE-E----TTEEECSS-CBTTTTTCCSSCEEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE-E----CCcCCCCC-CcHHHcCCCCCCceEEE
Confidence 47789999999999999999998 3454 58899996 3 34567764 88999999766544443
No 111
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=87.10 E-value=1.4 Score=40.08 Aligned_cols=73 Identities=5% Similarity=0.155 Sum_probs=57.0
Q ss_pred eeEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 197 Pl~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.+.|++. ..+...+.+.+.+..++..|++..|+..++++..+|++ |. ...|.+ +.|+.++++..+..|-+-.+
T Consensus 26 ~I~IkVk-~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi-Fd----G~~L~~-~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 26 LVAVKVV-NADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL-FD----GTPIDE-TKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp CEEEEEE-ETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE-SS----SCBCCS-SSHHHHHHCSSEEEEEEECC
T ss_pred eEEEEEE-CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-EC----CEEcCC-CCCHHHcCCCCCCEEEEEEc
Confidence 3566653 34566789999999999999999999999999999998 43 334544 47999999998887755543
No 112
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.84 E-value=1.6 Score=38.02 Aligned_cols=59 Identities=3% Similarity=-0.041 Sum_probs=46.6
Q ss_pred EEE-EEccCCCHHHHHHHHHHH-cCCCccceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 211 LLV-KISLEDNKVDLYKRACNL-FISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 211 ~~~-~~Sk~~ti~eL~~~v~~l-f~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
.++ .+...+||.+|++.+.+. .+++++++||-... ....|+| +.+|.+.++..+..|.+
T Consensus 25 ~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~---~Gk~L~D-~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 25 CFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP---KGKSLKD-EDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST---TSCCCCT-TCBTTTSSCCSEEEEEE
T ss_pred eEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC---CCcCcCC-CCCHHHcCCCCCCEEEE
Confidence 467 899999999999999995 79999999985321 2346766 47899999998877654
No 113
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=86.80 E-value=2 Score=40.05 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=48.1
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHH------HcCCC--ccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACN------LFISV--SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~------lf~i~--~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
.+...++.++..+||.+|++++.. .-++| ++++||. | ...+|+|. .+|.++++..+..+.+.
T Consensus 26 ~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI-y----~GK~LeD~-~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 26 SGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-Y----QGRFLHGN-VTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE-S----SSSEEESS-CBTGGGCCCTTSEEEEE
T ss_pred CCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE-E----CCcCCCCC-CcHHHcCCCCCCceEEE
Confidence 347789999999999999999998 55674 7889996 4 34467664 89999999877744333
No 114
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=86.25 E-value=3.6 Score=37.28 Aligned_cols=79 Identities=8% Similarity=-0.048 Sum_probs=57.1
Q ss_pred eeeEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEE
Q 002303 196 FPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (939)
Q Consensus 196 YPl~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (939)
..+.|| .+++..+...|...+|+.+|...+... +.....++|..-.-.. .+-.+.++||++++|.....++||.
T Consensus 24 ~~IqiR---lpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk--~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 24 VTVALR---CPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRR--ALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEE---CTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCC--BCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEEE---CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCc--CCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 334444 478888999999999999999998754 4445677777533221 2222678999999999999999987
Q ss_pred eecCc
Q 002303 276 QVHGF 280 (939)
Q Consensus 276 k~dg~ 280 (939)
+++.+
T Consensus 98 ~~~~~ 102 (109)
T 2cr5_A 98 KEQSS 102 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 65443
No 115
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=84.05 E-value=3.7 Score=41.38 Aligned_cols=71 Identities=8% Similarity=0.092 Sum_probs=58.3
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+.|++. .++..+.+.+.+..++..|++..|+..+++...+|++. . ...|.+ +.|++++++.+|..|-+-.+
T Consensus 30 I~LkV~--~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F-d----G~rI~~-~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 30 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-D----GIRIQA-DQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp EEEEEE--CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE-T----TEECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEe--cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE-C----CEEcCC-CCCHHHcCCCCCCEEEEEec
Confidence 567773 46778999999999999999999999999999999994 3 344544 58999999999988766555
No 116
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=83.68 E-value=1.6 Score=48.47 Aligned_cols=66 Identities=6% Similarity=0.040 Sum_probs=52.0
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHH---HcCCCccceEEEeecCCccccccccccccccccccCCCceE-EEEEeec
Q 002303 207 ETNSLLVKISLEDNKVDLYKRACN---LFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEV-FLQLQVH 278 (939)
Q Consensus 207 ~~~~~~~~~Sk~~ti~eL~~~v~~---lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~I-llE~k~d 278 (939)
++..+++.++..+||.+||+++.. ..+++.+++||. | ....|+| +++|.++++..+..| ++-.+..
T Consensus 16 ~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi-y----~GK~L~D-~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 16 QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-Y----AGKILSD-DVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp TTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE-S----SSSEECS-SSBTTTTCCCTTSCEEEEEECCC
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE-E----CCeecCC-cCCHHHcCCCCCCEEEEEEecCC
Confidence 355678889999999999999999 456999999997 3 3446766 489999999999888 4444543
No 117
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=79.57 E-value=6.7 Score=36.47 Aligned_cols=57 Identities=4% Similarity=-0.006 Sum_probs=43.2
Q ss_pred CCCeE-EEEEccCCCHHHHHHHHHH-----HcCCCc--cceEEEeecCCccccccccccccccccccCCCc
Q 002303 207 ETNSL-LVKISLEDNKVDLYKRACN-----LFISVS--EMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGE 269 (939)
Q Consensus 207 ~~~~~-~~~~Sk~~ti~eL~~~v~~-----lf~i~~--e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q 269 (939)
++..+ .+.+...+||.+|++++.. ..++|+ +++||- | ...+|+|. .+|.++++..+.
T Consensus 25 ~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI-y----~GK~LeD~-~TLsdy~I~~~~ 89 (126)
T 1se9_A 25 DGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI-S----AGKVLENS-KTVKDYRSPVSN 89 (126)
T ss_dssp TSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE-E----TTEECCTT-SBGGGGSCCTTS
T ss_pred CCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE-E----CCeECcCC-CcHHHcCCCcCC
Confidence 33344 6899999999999999954 446775 788985 3 34467764 899999999873
No 118
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=78.47 E-value=4.9 Score=39.97 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=57.9
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
|.|++. .+...+.+.|.+..++..|++..|+..+++...+|++. . ...|.+ +.|++++++.++..|-+-++
T Consensus 58 InLKVk--~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-D----GqRI~~-ddTPeDLdMEDGDtIDV~le 128 (207)
T 3tix_A 58 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-D----GIEIQA-DQTPEDLDMEDNDIIEAHRE 128 (207)
T ss_dssp EEEEEE--CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-T----TEECCS-SCCTTTTTCCTTEEEEECCC
T ss_pred EEEEEe--cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-C----CeecCC-CCCHHHcCCCCCCEEEEEEe
Confidence 667762 47788999999999999999999999999999999984 3 334544 58999999999988766544
No 119
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=77.37 E-value=9.7 Score=33.68 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=53.1
Q ss_pred eEEEEeeecCCC-eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 198 LQIRLSVSQETN-SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 198 l~l~l~~~~~~~-~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
+.|++. .++.+ .+.+.+.+..++.-|.+..|+..+++...+|++. . ...+. .+.|.+++++.++..|-+
T Consensus 26 I~LkV~-~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-D----G~rI~-~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 26 LQLRVQ-GKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-D----GTKLS-GRELPADLGMESGDLIEV 95 (97)
T ss_dssp EEEEEE-ESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-T----TEECC-SCSCHHHHTCCTTEEEEE
T ss_pred EEEEEE-cCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-C----CEEcC-CCCCHHHcCCCCCCEEEE
Confidence 556653 34553 6899999999999999999999999999999984 3 23343 357999999998877643
No 120
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=71.74 E-value=8.8 Score=35.68 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=51.0
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHc-CCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLF-ISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf-~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
+.|++ .|+..+...|...+|+.+|+..+.... +.....+.|..-. ....+.+.++||++++|.. ..|++.
T Consensus 55 IqIRl---pdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~f---Prk~l~d~~~TL~eagL~p-savl~k 125 (127)
T 1s3s_G 55 IQIRL---ADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTF---PNKELADENQTLKEANLLN-AVIVQR 125 (127)
T ss_dssp EEEEE---TTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETT---TTEECCSTTCBHHHHTCSS-CEEEEE
T ss_pred EEEEC---CCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCC---CCCCCCCCCCcHHHCCCcC-ceEEEE
Confidence 55664 788889999999999999999998764 3445667776533 2234556689999999986 455543
No 121
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=69.51 E-value=29 Score=29.28 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=50.2
Q ss_pred eecCCCeEEEEEccCCCHHHHHHHHHHHcCCCcc-ceEEEeecCCccccccccccccccccccCCCceEEE
Q 002303 204 VSQETNSLLVKISLEDNKVDLYKRACNLFISVSE-MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 204 ~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e-~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
.++...-..+.+....++..+.+.-|+..+|+.+ .+|+- + .+..| ++++++.+..+.+|..|=+
T Consensus 15 ~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~Irll-F----DGdRL-dp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 15 RSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLE-F----EGEWL-DPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEE-E----TTEEC-CTTSBGGGSSCCTTCEEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEE-E----cCccc-CccCChhhhCCcCCceeee
Confidence 3455566889999999999999999999999988 78886 4 23344 4568899999998876533
No 122
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=68.68 E-value=7.2 Score=36.49 Aligned_cols=37 Identities=5% Similarity=0.167 Sum_probs=33.0
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecC
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~ 246 (939)
..++.+-+..++.+|++.+-+.+|+|++.+|||....
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~ 93 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQA 93 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeec
Confidence 3567888999999999999999999999999997744
No 123
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=61.75 E-value=19 Score=31.29 Aligned_cols=63 Identities=6% Similarity=-0.062 Sum_probs=48.5
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEE
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (939)
++....++.++...++.++.+.+|+.|++++++..|-. ....+ |.+..+.-+||-.|..+-+.
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh-----~~k~l-DLSlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF-----QRTVL-DLSLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE-----TTEEE-SSSCBHHHHCCCSSCEEEEE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe-----CCEec-cccceeEecCCCCCCEEEEE
Confidence 55667889999999999999999999999988776652 11223 55566777888888887666
No 124
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=61.69 E-value=18 Score=32.06 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=55.6
Q ss_pred cceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecc-eeeeeccCCcccccc
Q 002303 524 RTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS-KIFRVLDEPSDLLGL 594 (939)
Q Consensus 524 ~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~~~~~ 594 (939)
....|.|+..||+. .++.|.+..|.+|+++.|.....+..+....++|..-+ .+-++|+|.+..+..
T Consensus 8 ~k~vvkvf~~Dgss----ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGAC----RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCE----EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCE----EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 44678888999975 58899999999999999999999998899999998876 677888876655443
No 125
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=59.68 E-value=17 Score=30.95 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=50.5
Q ss_pred cCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceE-EEeecCCccccccccccccccccccCCCceEEE
Q 002303 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLY-IWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (939)
Q Consensus 206 ~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~R-LW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (939)
.......+.++..-|+++|.+.+.+.++++..+.. -| ..-.|+..+|.+ +..|.+.++..|..+.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~-irv~NK~~~L~~-~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHW-IRVVNKDKVFSG-ECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCE-EEEGGGTEEEET-TSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCE-EEEecCCEEEcC-CCEEeeCCcCCCCEEEE
Confidence 45678899999999999999999999999854221 12 233456777765 47899999999987765
No 126
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=58.69 E-value=13 Score=34.52 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=29.9
Q ss_pred ecCCCeEEEEEccCCCHHHHHHHHHHHcCCCcc
Q 002303 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSE 237 (939)
Q Consensus 205 ~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e 237 (939)
..|+...++.++-..++.+++..+|..+||+..
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 478899999999999999999999999999843
No 127
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=58.64 E-value=35 Score=29.95 Aligned_cols=67 Identities=1% Similarity=0.089 Sum_probs=54.0
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVF 272 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Il 272 (939)
+.|++. .++..+.+.+.+...+.-|++..|+..|++...+|+. +. ...+.. +.|..++++..+..|=
T Consensus 22 IniKV~--~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFl-fD----G~rI~~-~~TP~~L~meD~DiID 88 (95)
T 2l76_A 22 FPLKIR--CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLL-FG----ETELSP-TATPRTLKLGVADIID 88 (95)
T ss_dssp EEEEEE--CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEE-ET----TEECCT-TSCHHHHTCCSSCEEE
T ss_pred EEEEEE--cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEE-EC----CcCCCC-CCCHhHcCCCCCCEEE
Confidence 777775 4678899999999999999999999999999999887 32 233433 4789999999887753
No 128
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=50.53 E-value=28 Score=30.57 Aligned_cols=43 Identities=9% Similarity=-0.060 Sum_probs=36.3
Q ss_pred EEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEE
Q 002303 200 IRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIW 242 (939)
Q Consensus 200 l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW 242 (939)
+.++-........+.+...+|+..+++++.+..||++.++||-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL 57 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELI 57 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3444455566788999999999999999999999999998886
No 129
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=50.49 E-value=3.3 Score=41.33 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEee
Q 002303 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (939)
Q Consensus 208 ~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (939)
...+++.++..+||.+|+.++....+||++++||. + ....|+|. .+|. .+.+|-|-++.
T Consensus 10 GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLI-f----~GK~LeD~-~TLs-----~~STLhLvlRL 68 (189)
T 2xzm_9 10 GETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLV-N----NGFIAPNT-ELVT-----DDVTYYLSLKL 68 (189)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEE-e----cCeECCCC-Cccc-----CCCEEEEEEec
Confidence 45677889999999999999999999999999998 3 23456663 6665 46666666663
No 130
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=47.42 E-value=59 Score=27.73 Aligned_cols=62 Identities=13% Similarity=-0.077 Sum_probs=39.7
Q ss_pred eEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCccccc--cccCCCcEEE
Q 002303 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLG--LIRDEDKLVA 603 (939)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~i~~ 603 (939)
.+++++...|+.+|++.+....|++...+-++..-.+..+.....+....|. .|.++..|.+
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 5788999999999999999999999776655543223333333333334443 3555555443
No 131
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=44.44 E-value=4.9 Score=40.58 Aligned_cols=71 Identities=8% Similarity=0.129 Sum_probs=0.0
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+.|++ ..++..+.+.+.+..++..|++..|+..+++...+|+. |. ...+.+ +.|.+++++.+|..|-+-.+
T Consensus 22 InLKV--~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFL-FD----GqRI~d-ddTPadL~MEDGDtIDV~le 92 (227)
T 3v7o_A 22 INLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YD----GIRIQA-DQTPEDLDMEDNDIIEAHRE 92 (227)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EEEEE--eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEE-EC----CEecCC-CCCHHHcCCCCCCEEEEEec
Confidence 55666 44677889999999999999999999999999999887 43 233444 57899999999987755444
No 132
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.83 E-value=1.5e+02 Score=25.34 Aligned_cols=34 Identities=6% Similarity=-0.245 Sum_probs=28.8
Q ss_pred cceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
...+++++...++.+|+..+....|++...+-+.
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~ 52 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELE 52 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCE
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEE
Confidence 4588999999999999999999999987655443
No 133
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=42.22 E-value=1.1e+02 Score=25.19 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=32.6
Q ss_pred eEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
|.+++-..+|. .+.+.++.+.++.+|+..+....+++....-++
T Consensus 4 m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~ 47 (85)
T 3mtn_B 4 MQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 47 (85)
T ss_dssp EEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred EEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE
Confidence 55555555553 367788899999999999999999886555443
No 134
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=41.02 E-value=84 Score=27.15 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 521 TTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 521 ~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
.....|.+++-..+|.. +.+.++...++.+|+..+....+++....-+
T Consensus 18 ~~~~~m~I~Vk~~~g~~----~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 65 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGKT----ITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 65 (98)
T ss_dssp ----CCEEEEEETTCCE----EEEECCTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred CCCCeEEEEEEeCCCCE----EEEEECCCCcHHHHHHHHHHHhCCChhHEEE
Confidence 33456777777666643 6788999999999999999999988655544
No 135
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=40.81 E-value=1.2e+02 Score=27.59 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=28.7
Q ss_pred cceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
...+++++...++.+|+..+...+|++...+-+.
T Consensus 18 ~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~ 51 (122)
T 1t0y_A 18 FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQ 51 (122)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEE
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEE
Confidence 4578899999999999999999999987655444
No 136
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.20 E-value=49 Score=28.32 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=48.4
Q ss_pred EEEeeecC-CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccC
Q 002303 200 IRLSVSQE-TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK 266 (939)
Q Consensus 200 l~l~~~~~-~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~ 266 (939)
+++..+.. ++...+.+|..-++.+|.-.+|..-+++++.+-|-.-+ ...+.| |.+++|.|.+|.
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~--~~~e~L-dLskSLndlgir 75 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDY--QSQEPL-DLTKSLNDLGLR 75 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCS--SCCCBC-CTTSCHHHHTCS
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCC--CCCccc-chhcchhhhhhh
Confidence 45555544 55677899999999999999999999999988665332 233444 456899999986
No 137
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.94 E-value=76 Score=27.73 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=37.3
Q ss_pred ceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCccccc--cccCCCcEE
Q 002303 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLG--LIRDEDKLV 602 (939)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~i~ 602 (939)
.+.+.++.+.++.+|+..+....+++...+-++ |+. +.+.|....+. .|.+++.|+
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~g---k~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIV---YME---QLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE---ETT---EEECCSSSBHHHHTCCTTEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE---ECC---EECCCCcccHHHCCCCCCCEEE
Confidence 466889999999999999999999986554443 343 34454433443 355555544
No 138
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=39.59 E-value=85 Score=31.52 Aligned_cols=71 Identities=10% Similarity=0.165 Sum_probs=53.6
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
+.|++. .+.+.+.+.+.+..++.-|++..|+..+++..++|+- +.+ ..+.. ++|..++.+.++..|-+-.+
T Consensus 22 i~ikv~--~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~-fdG----~~i~~-~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 22 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDG----IRIQA-DQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp EEEEEE--CSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEE-ETT----EECCT-TCCTTTTTCCTTEEEEEECS
T ss_pred EEEEEE--cCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEE-ECC----EeccC-CCChHHhhhcccccchhhcc
Confidence 556663 3567789999999999999999999999999999886 332 22333 46788888887776655544
No 139
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=39.10 E-value=79 Score=34.58 Aligned_cols=73 Identities=7% Similarity=0.063 Sum_probs=54.9
Q ss_pred eEEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCC----CccceEEEeecCC-ccccccccccccccccccCCCceEE
Q 002303 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFIS----VSEMLYIWDFSGQ-TTQFLMNDRVTMSDDFSAKPGEEVF 272 (939)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i----~~e~~RLW~~~~~-~~~~lL~d~~~tL~d~~l~~~q~Il 272 (939)
+.|+|..- +..++++|....||.++.+++++.+.- +.++.-||-..+. .+..-|.. .++|+..++.++..+.
T Consensus 4 ~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~-~~~l~~y~~~~~~~l~ 80 (371)
T 3ivf_A 4 LSLKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEA-GKALDYYMLRNGDTME 80 (371)
T ss_dssp EEEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCT-TSBGGGGTCCTTCEEE
T ss_pred EEEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccC-CCCHHHhCCCCCceee
Confidence 55666653 677899999999999999999998853 4678899976553 34444655 4699999998886554
Q ss_pred E
Q 002303 273 L 273 (939)
Q Consensus 273 l 273 (939)
.
T Consensus 81 ~ 81 (371)
T 3ivf_A 81 Y 81 (371)
T ss_dssp E
T ss_pred c
Confidence 3
No 140
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=37.46 E-value=14 Score=34.52 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=20.7
Q ss_pred cccccccccCCCcchHHHHHHHHh
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLA 359 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~ 359 (939)
...+.|+.|--++|.+|++||...
T Consensus 10 kk~fys~pN~hdncWLNtilQLfr 33 (167)
T 1qmy_A 10 KKTFYSRPNNHDNAWLNAILQLFR 33 (167)
T ss_dssp EEECCCCCCSSSCHHHHHHHHHHH
T ss_pred ccccccCCCCCcchHHHHHHHHHH
Confidence 346789999999999999999764
No 141
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=35.24 E-value=1.6e+02 Score=26.46 Aligned_cols=66 Identities=5% Similarity=-0.097 Sum_probs=47.1
Q ss_pred eeecCCCeEEEEEccCCCHHHHHHHHHHHc-C-------CCccceEEEeecCCccccccccccccccccccCCC
Q 002303 203 SVSQETNSLLVKISLEDNKVDLYKRACNLF-I-------SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPG 268 (939)
Q Consensus 203 ~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf-~-------i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~ 268 (939)
|..+++--+.+.+|+..|+.++|..+-+.- . -+++......++..-..+.+.|.++.|.+..+..+
T Consensus 24 ~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf~p 97 (108)
T 2v1y_A 24 CLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLFQP 97 (108)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBSSS
T ss_pred EEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEeccccce
Confidence 456888888999999999999999886652 1 23445555555554445567787888988887744
No 142
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=34.27 E-value=1.4e+02 Score=25.34 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=31.4
Q ss_pred eEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
|.+++-..+|. .+.+.++.+.++.+|+..+....+++....-+
T Consensus 2 m~i~vk~~~g~----~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL 44 (96)
T 3k9o_B 2 MQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 44 (96)
T ss_dssp CEEEEEETTCC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred cEEEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhHEEE
Confidence 34555545553 35678889999999999999999988654433
No 143
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=33.86 E-value=1.9e+02 Score=25.20 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=40.3
Q ss_pred ceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCcccc--ccccCCCcEEEEE
Q 002303 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLL--GLIRDEDKLVAYR 605 (939)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~--~~i~~~d~i~~ye 605 (939)
+..+.+..+.++.+|++.++...|++.....+ +|..+. ++|. ..+ -.|.+++.|..|-
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL---if~Gk~---LkD~-~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVL---QKGGSV---LKDH-ISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEE---EETTEE---CCTT-SBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEE---EeCCEE---ccCc-CCHHHcCCCCCCEEEEEe
Confidence 46678888999999999999999998765544 344443 4442 233 3477777777663
No 144
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=33.82 E-value=1.4e+02 Score=26.06 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=28.9
Q ss_pred cceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
...+++++...++.+|+..+....|+++..+-++
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi 60 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALE 60 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEE
Confidence 3578899999999999999999999997665554
No 145
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=31.01 E-value=2e+02 Score=24.87 Aligned_cols=33 Identities=15% Similarity=-0.047 Sum_probs=27.9
Q ss_pred ceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
..+++++...++.+|++.+....|++...+-++
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~ 61 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQ 61 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEE
Confidence 467888999999999999999999997665444
No 146
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.97 E-value=1.4e+02 Score=25.56 Aligned_cols=64 Identities=19% Similarity=0.076 Sum_probs=40.4
Q ss_pred ceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeec-ceeeeeccCCccccc--cccCCCcEEEE
Q 002303 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR-SKIFRVLDEPSDLLG--LIRDEDKLVAY 604 (939)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~-~~~~~~~~~~~~~~~--~i~~~d~i~~y 604 (939)
...+++++..++.+|+..+...+|++...+-+....-. .....-+.+....|. .|.+++.|.+-
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 35678899999999999999999998765544332111 112222445555554 35566666543
No 147
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.66 E-value=2.6e+02 Score=24.53 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=40.0
Q ss_pred cceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCcccc--ccccCCCcEEEEEc
Q 002303 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLL--GLIRDEDKLVAYRL 606 (939)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~--~~i~~~d~i~~yel 606 (939)
-.+.+.+..+.++.+|++.++...|++....-++ |+.++ ++| ...| ..|.++..|.+-.+
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI---~~GKi---L~D-~~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIV---INKKQ---LQL-GKTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE---ETTEE---CCT-TSBHHHHTCCSSEEEEEECC
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE---eCCeE---CCC-CCcHHHcCCCCCCEEEEEEE
Confidence 4578888899999999999999999976554443 55553 343 2333 23556666554444
No 148
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=29.19 E-value=2.7e+02 Score=24.25 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=50.3
Q ss_pred EEEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 199 QIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 199 ~l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
.++++ .++++..++.+-...|+++-..++++.-++.++.+.++.....+...+ +.+. |++.-.+..|.+|+.
T Consensus 19 ~irvh-LPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~~I--dWdt---Di~~L~~eEL~Ve~l 90 (95)
T 2l05_A 19 IVRVF-LPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPI--GWDT---DISWLTGEELHVEVL 90 (95)
T ss_dssp EEEEE-ETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEEEE--CTTS---BGGGGTTCEEEEEES
T ss_pred EEEEE-CCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCcccc--chhH---hhhhccCcEEEEEEe
Confidence 34444 377778889999999999999999999999999998885543322221 2222 222234788888864
No 149
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=28.92 E-value=1.2e+02 Score=26.91 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=47.4
Q ss_pred eEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCcccc-ccccCCCcEEEEEc
Q 002303 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLL-GLIRDEDKLVAYRL 606 (939)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~-~~i~~~d~i~~yel 606 (939)
.++.++.+.+.++++..+++..+... +.++++++...+=...|+..+..+ +.+.-+..||++.-
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~~-e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 22 VSVKAKVSSIAQEILKVVAEKIQYAE-EDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEECCCTTCBSHHHHHHHHHHHTSCG-GGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEEEeccchHHHHHHHHHHHhcCCc-cceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 45677888899999999999887653 468889997666556666544444 56777888887753
No 150
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=28.80 E-value=17 Score=27.84 Aligned_cols=14 Identities=57% Similarity=1.322 Sum_probs=11.6
Q ss_pred CCCCCCCCccccCc
Q 002303 804 GPEDMWYCPRCKKH 817 (939)
Q Consensus 804 ~~~d~w~C~~Ck~~ 817 (939)
+.+|.|.|+.|+++
T Consensus 7 ~~eD~WkC~~C~k~ 20 (53)
T 2cr8_A 7 GSEDEWQCTECKKF 20 (53)
T ss_dssp CCSCCEECSSSCCE
T ss_pred CCcceeeccccccc
Confidence 45788999999976
No 151
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=27.94 E-value=63 Score=32.55 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.5
Q ss_pred eccCCCCeEEEEEEeCCCCEEEEcCCcceecC
Q 002303 887 YGGMGGGHYTAFVDLGHKRWFEFDDDRVYPVS 918 (939)
Q Consensus 887 ~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs 918 (939)
.|+.++|||+.++.. .+ +.+|=..+.+++
T Consensus 167 ~G~~~~GHY~~~~~~-~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 167 TGTTQNGHYMVDDIE-HG--YCVDGMGIKPLK 195 (211)
T ss_dssp ESCTTTCEEEEEETT-TT--EEEETTEEECCC
T ss_pred EcCCCCceEEEEecc-cc--eEEeCCceeEcc
Confidence 899999999999753 23 899999998887
No 152
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=27.56 E-value=1.3e+02 Score=25.48 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=36.0
Q ss_pred ccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 523 MRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 523 ~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
...|.+++-..+|. .+.+.+....++.+|+..+....|++....-+
T Consensus 15 ~~~m~i~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 60 (91)
T 3v6c_B 15 RGSMQIFVNTLTGT----HITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 60 (91)
T ss_dssp CCSEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred CCeEEEEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhhEEE
Confidence 45677777766664 36788999999999999999999998655443
No 153
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=27.35 E-value=93 Score=26.02 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=34.1
Q ss_pred cceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 524 RTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 524 ~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
..|.+++-..+|.. +.+.+..+.++.+|+..+....+++....-+
T Consensus 16 ~~m~i~Vk~~~g~~----~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL 60 (88)
T 4eew_A 16 DSLEVLVKTLDSQT----RTFIVGAQMNVKEFKEHIAASVSIPSEKQRL 60 (88)
T ss_dssp CEEEEEEEETTSCE----EEEEEETTCBHHHHHHHHHHHHTCCGGGEEE
T ss_pred CeEEEEEEcCCCCE----EEEEECCCCCHHHHHHHHHHHhCCCHHHEEE
Confidence 35666666666643 5678889999999999999999988655433
No 154
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.09 E-value=1.5e+02 Score=24.08 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=33.3
Q ss_pred cceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 524 RTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 524 ~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
..|.+++-..+|. .+.+.++.+.++.+|++.+++..+++....-+
T Consensus 6 ~~m~i~vk~~~g~----~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL 50 (81)
T 2dzi_A 6 SGMQLTVKALQGR----ECSLQVPEDELVSTLKQLVSEKLNVPVRQQRL 50 (81)
T ss_dssp SSEEEEEEETTSC----EEEEEECSSCBHHHHHHHHHHHTCCCTTTCEE
T ss_pred CcEEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 3456666555553 35688899999999999999999988655444
No 155
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=26.71 E-value=94 Score=26.23 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=33.7
Q ss_pred ceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 525 TMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 525 ~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
-|.+.+...+|.. +.+.++.+.++.+|++.++...+++....-+
T Consensus 9 ~~~i~v~~~~G~~----~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 52 (88)
T 1sif_A 9 GLQLFIKTLTGKT----FTVEMEPSDTIENLKAKIQDKEGIPPDQQRL 52 (88)
T ss_dssp -CEEEEEETTSCE----EEEECCTTSBHHHHHHHHHHHHCCCGGGCEE
T ss_pred ceEEEEEeCCCCE----EEEEECCCChHHHHHHHHHHHHCcChhhEEE
Confidence 3566777777743 6788899999999999999999988655444
No 156
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=26.41 E-value=55 Score=37.92 Aligned_cols=37 Identities=5% Similarity=0.167 Sum_probs=32.9
Q ss_pred eEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecC
Q 002303 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246 (939)
Q Consensus 210 ~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~ 246 (939)
..++.+-+..|+.+|++.+-+.+|++.+++|||....
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~ 73 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQA 73 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEE
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEc
Confidence 3467888999999999999999999999999997643
No 157
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=26.15 E-value=1.3e+02 Score=25.57 Aligned_cols=37 Identities=5% Similarity=-0.164 Sum_probs=32.9
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeec
Q 002303 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFS 245 (939)
Q Consensus 209 ~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~ 245 (939)
..+.+.+.+.-+..+|.+++++.++++++...|.-..
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 5788999999999999999999999998888887443
No 158
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=25.85 E-value=1.3e+02 Score=24.96 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=33.9
Q ss_pred cceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 524 RTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 524 ~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
..|.+++-..+|. .+.+.++.+.++.+|+..+....+++....-+
T Consensus 11 ~~m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL 55 (88)
T 3dbh_I 11 GSMLIKVKTLTGK----EIEIDIEPTDKVERIKERVEEKEGIPPQQQRL 55 (88)
T ss_dssp CCEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCE
T ss_pred CcEEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcCHHHEEE
Confidence 4466666655554 35788899999999999999999988654433
No 159
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=25.60 E-value=1.1e+02 Score=25.66 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=34.0
Q ss_pred ceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 525 TMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 525 ~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
.|.+++-...|. .+.+.++.+.++.+|++.+....|++....-+
T Consensus 10 ~~~i~vk~l~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 53 (84)
T 2kk8_A 10 HMKFLVENLNGS----SFELEVDYRDTLLVVKQKIERSQHIPVSKQTL 53 (84)
T ss_dssp CEEEEEEETTSC----EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEE
T ss_pred ceEEEEEecCCc----EEEEEECCCChHHHHHHHHHHHHCcChHHEEE
Confidence 466666666664 36788999999999999999999988655444
No 160
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=24.43 E-value=1.1e+02 Score=24.34 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=25.5
Q ss_pred eEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
+.+.++.+.++.+|++.+++..+++....-+
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L 43 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 43 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEE
Confidence 5678888999999999999999987654433
No 161
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=24.09 E-value=3.4e+02 Score=23.21 Aligned_cols=71 Identities=10% Similarity=0.095 Sum_probs=50.1
Q ss_pred EEEeeecCCCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEe
Q 002303 200 IRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (939)
Q Consensus 200 l~l~~~~~~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (939)
++++ .++++..++++-...|+++-..++++.-++.++.+.++......+..+ +.+. |++.-.+..|.+|+.
T Consensus 10 irvh-LPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~I--dWdt---Di~~L~~eEL~Ve~l 80 (86)
T 1wxm_A 10 VKVY-LPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVT--AWDT---AIAPLDGEELIVEVL 80 (86)
T ss_dssp EEEE-CSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEE--CSSS---BSTTCSSCEEEEEEC
T ss_pred EEEE-CCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCcccc--chhH---hhhhccCcEEEEEEc
Confidence 4443 377788899999999999999999999999999998886543322221 2222 222234788888865
No 162
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.83 E-value=1.6e+02 Score=25.53 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHcCCCccceEEEeecCCccccccccccccccccccCCCceEEEEEeecCcccC
Q 002303 218 EDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSDS 283 (939)
Q Consensus 218 ~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dg~W~~ 283 (939)
+.++.+|+.++|..|.++...++|....+.+ .+++. .. ...-.++++++-+..+-.|..
T Consensus 27 A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT---~VddE-ey---F~tLp~nT~lmvL~~ge~W~p 85 (91)
T 2eel_A 27 ASSLQELISKTLDALVIATGLVTLVLEEDGT---VVDTE-EF---FQTLGDNTHFMILEKGQKWMP 85 (91)
T ss_dssp ESSHHHHHHHHHHHTTCSSSCEEEEETTTCC---BCCCH-HH---HTTSCSSEEEEEEETTCCCCC
T ss_pred cCCHHHHHHHHHHHhcCCCCCcEEEEeeCCc---EEech-hh---hhhCCCCCEEEEEcCCCccCC
Confidence 6789999999999999987778887554333 22221 11 222346788887778888853
No 163
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=22.98 E-value=1.2e+02 Score=24.02 Aligned_cols=31 Identities=6% Similarity=0.166 Sum_probs=25.4
Q ss_pred eEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
+.+.++.+.++.+|+..+++..+++....-+
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L 43 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEE
Confidence 5678888999999999999999988654433
No 164
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=22.92 E-value=1.6e+02 Score=25.54 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=34.3
Q ss_pred CccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 522 TMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 522 ~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
....|.+++-...| ++.+.++.+.++.+|++.+....+++....-+
T Consensus 19 ~~~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 64 (100)
T 1yqb_A 19 SPHLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL 64 (100)
T ss_dssp CTTEEEEEEECSSC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEE
T ss_pred CCCeEEEEEEcCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 34556776666555 25788899999999999999999988554433
No 165
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=22.74 E-value=1e+02 Score=32.95 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=25.6
Q ss_pred eeccCCCCeEEEEEEeCCCCEEEEcCCcceecCc
Q 002303 886 HYGGMGGGHYTAFVDLGHKRWFEFDDDRVYPVSE 919 (939)
Q Consensus 886 H~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~vs~ 919 (939)
-.|+.++||||-+.-. ++ =|.||=..+.+++.
T Consensus 265 F~G~~~~GHYt~~~~~-~~-~~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 265 YTGNYQCGHYTHITAK-ET-LYRIDGAHLTKMSE 296 (315)
T ss_dssp EESCGGGCEEEEEEES-SS-EEEEETTEEEEESE
T ss_pred EECCCCccceEEEecC-Cc-eeEEeCCcceeccc
Confidence 3799999999998853 23 38999999998875
No 166
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=22.62 E-value=97 Score=25.49 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=31.7
Q ss_pred eEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
|.+++-..+|. .+.+.++.+.++.+|++.+.+..+++....-+
T Consensus 4 m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL 46 (85)
T 3n3k_B 4 MRIVVKTLMGR----TIILEVEPSDTIENVKAKIQDKEGIPPDQQRL 46 (85)
T ss_dssp CEEEEECGGGC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEE
Confidence 45555544443 26678889999999999999999998665444
No 167
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=21.63 E-value=1.6e+02 Score=26.95 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=47.3
Q ss_pred eEEEecCCcchHHHHHHHhhhhccCC-----ccceeeeEeecceeeeeccCCcccc-ccccCCCcEEEEE
Q 002303 542 FTVTVPKYGRFQDLIDALSTKCFLRN-----HEKLLVAEIYRSKIFRVLDEPSDLL-GLIRDEDKLVAYR 605 (939)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~-----~~~l~~~e~~~~~~~~~~~~~~~~~-~~i~~~d~i~~ye 605 (939)
.++.++.+.++++++..++...+... .+.++++++...+=...|+..+..+ +.+.-+..||++.
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~ 91 (120)
T 2dhz_A 22 VTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACT 91 (120)
T ss_dssp CCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEEC
T ss_pred EEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 45788889999999999998887643 2368899998776666677544444 5577777887764
No 168
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=21.24 E-value=78 Score=31.16 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=23.9
Q ss_pred EEEEEeec-cCCCCeEEEEEEe-CCCCEEEEcC
Q 002303 881 YAISNHYG-GMGGGHYTAFVDL-GHKRWFEFDD 911 (939)
Q Consensus 881 ~AVinH~G-~l~gGHYtAy~k~-~~~~Wy~fnD 911 (939)
.||||--| ..||=|+.|++-+ ...+.|.||=
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDP 72 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEP 72 (204)
T ss_dssp EEEEESCC----CCCEEEEEEETTTTEEEEECT
T ss_pred eeEEecCCcccCceeEEEeEecCCcceEEEeCC
Confidence 68999888 6788899999999 6677999973
No 169
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=21.06 E-value=1.4e+02 Score=25.04 Aligned_cols=31 Identities=6% Similarity=0.166 Sum_probs=26.0
Q ss_pred eEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
+.+.++.+.++.+|+..+....+++....-+
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 43 (88)
T 4fbj_B 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (88)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhHEEE
Confidence 5678889999999999999999988655544
No 170
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=20.64 E-value=75 Score=32.01 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=42.3
Q ss_pred ccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHHH
Q 002303 337 LGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKL 416 (939)
Q Consensus 337 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~l 416 (939)
.|.+=|.=.-|.||+||++=.|=.+... ++++..++..+ .|..|...+
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~---------------------------~~~aw~~f~~G-----d~~~fV~~~ 58 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDFF---------------------------NNEAWEKFKKG-----DVMDFVNLC 58 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTTC---------------------------CCHHHHHHTTT-----CCHHHHHHH
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcChh---------------------------HHHHHHHHhCC-----ChHHHHHHH
Confidence 4556666678999999998777555443 11122222122 344454444
Q ss_pred hhcCCccCCCCCCCHHHHHHHHH
Q 002303 417 ANFAPQFSGYNQHDSQEFLAFLL 439 (939)
Q Consensus 417 ~~~~p~F~~~~QQDA~EfL~~LL 439 (939)
-... .+.-++--||+++|..||
T Consensus 59 Ya~~-~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 59 YAAT-TLARGHSGDAEYLLELML 80 (211)
T ss_dssp HHHH-TCCTTSCCCHHHHHHHHH
T ss_pred HHHc-CCCCCCCcCHHHHHHHHH
Confidence 3332 345578899999999998
No 171
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.27 E-value=2.1e+02 Score=24.86 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=33.5
Q ss_pred ccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 523 MRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 523 ~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
...|.|++-...+ ++.+.+..+.++.+|+..+....+++....-+
T Consensus 15 ~~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 59 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL 59 (106)
T ss_dssp SSEEEEEEECSSC-----EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEE
T ss_pred CceEEEEEEeCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 4556666665554 25788999999999999999999987554433
No 172
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=20.08 E-value=1.7e+02 Score=23.67 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=32.1
Q ss_pred eEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCcccee
Q 002303 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (939)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (939)
|.+++-..+|. .+.+.++...++.+|+..+....|++....-+
T Consensus 5 m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL 47 (79)
T 3phx_B 5 LSILVRNNKGR----SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWL 47 (79)
T ss_dssp EEEEEECTTSC----EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEE
T ss_pred EEEEEEeCCCC----EEEEEECCcChHHHHHHHHHhhcCCCHHHEEE
Confidence 55555555554 35678889999999999999999998655433
Done!