Your job contains 1 sequence.
>002304
MEEQIAQNCEQSLSVSKRHSLRALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDSDSL
TRHHELTLLAGLSLRHPHFSPLISNSLRSNSLLFSSYSPRLAAAAALAVISDHTVDDRFF
VSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVV
FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQL
CSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA
SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQAL
ETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLL
ENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVL
AISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNFSEAN
FKGEDTPLHEAKSDDPNCTTEVSIGADIHMQKSSDEASKSRSWIHGKLKETATSRCQLEE
EDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQ
YFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLE
LMLVSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINIS
HTSYRPSLFNQLLNSFSLSQLVFHGRLEHVHAELGVPDNSSENPVIFVSGLPVSIPFEIT
LYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKASFTLRVCI
GMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSRG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002304
(939 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077848 - symbol:SIEL "SHORT-ROOT interacting ... 1660 9.1e-171 1
FB|FBgn0026679 - symbol:IntS4 "Integrator 4" species:7227... 211 2.5e-19 3
WB|WBGene00012234 - symbol:W04A4.5 species:6239 "Caenorha... 205 1.0e-18 3
DICTYBASE|DDB_G0286633 - symbol:ints4 "integrator complex... 228 1.2e-18 2
UNIPROTKB|Q96HW7 - symbol:INTS4 "Integrator complex subun... 235 7.1e-17 2
UNIPROTKB|E1BLD2 - symbol:INTS4 "Uncharacterized protein"... 235 7.1e-17 2
MGI|MGI:1917164 - symbol:Ints4 "integrator complex subuni... 235 7.1e-17 2
UNIPROTKB|D3ZZQ6 - symbol:Ints4 "Protein Ints4" species:1... 235 7.1e-17 2
>TAIR|locus:2077848 [details] [associations]
symbol:SIEL "SHORT-ROOT interacting embryonic lethal"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005768 "endosome" evidence=IDA] [GO:0010496
"intercellular transport" evidence=IMP] [GO:0090057 "root radial
pattern formation" evidence=IMP] InterPro:IPR016024 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005768 eggNOG:NOG269182
KO:K13141 GO:GO:0010496 EMBL:AY065129 IPI:IPI00545266
RefSeq:NP_187492.2 UniGene:At.28585 ProteinModelPortal:Q8VZA0
SMR:Q8VZA0 PRIDE:Q8VZA0 EnsemblPlants:AT3G08800.1 GeneID:820027
KEGG:ath:AT3G08800 TAIR:At3g08800 HOGENOM:HOG000091088
InParanoid:Q8VZA0 OMA:CSMVRDM PhylomeDB:Q8VZA0
ProtClustDB:CLSN2690527 Genevestigator:Q8VZA0 GO:GO:0090057
Uniprot:Q8VZA0
Length = 936
Score = 1660 (589.4 bits), Expect = 9.1e-171, P = 9.1e-171
Identities = 368/828 (44%), Positives = 506/828 (61%)
Query: 115 VDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVC 174
+DD F S+C + +S RLWLLRNA+RFNV +LFT+ LG +KDPYPY+R+ AL+GL+
Sbjct: 126 IDDEVFASICLGAPISSRLWLLRNADRFNVPSSVLFTLFLGFSKDPYPYIRKVALDGLIN 185
Query: 175 LLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK-NRIDCS 233
+ F ++GC RAVELL D ED VR +AVR VS WGK++IA +E+ NR DC+
Sbjct: 186 ICNAGDFNHTHAVEGCYTRAVELLSDAEDSVRSSAVRAVSVWGKVMIASKEEEMNRRDCT 245
Query: 234 DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAA 293
D VF+QLCS++RDM ++VRVE F A G +G SE ++LQTLSKKVLGA K KK +L +
Sbjct: 246 DAVFLQLCSVVRDMSVDVRVEVFKAFGIIGTASESIILQTLSKKVLGAGKGKKPQNLLSN 305
Query: 294 ECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSV 353
++S+ AAG ++HGFEDEFYEVR++A S SL + S KF EA+ LL+DML DD +
Sbjct: 306 GSADVSS--AAGVYIHGFEDEFYEVREAAVDSFHSLSVNSIKFPDEAVYLLMDMLYDDYM 363
Query: 354 TVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFR 413
VRL+AL+ +H + +L +++ +M FL +VD SE +R AR ILKL K P L+
Sbjct: 364 VVRLKALKALHHIADLGNLKIQETYMPAFLDAIVDTSENIRVEARNILKLAKLPDLKLVN 423
Query: 414 LFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNAR 473
IDG+L++L++YPQDE D+ S LF G++H NF ++K +++ S K F++ +
Sbjct: 424 KCIDGVLKSLEMYPQDEPDILSALFHFGQNHTNFLVSMVKRFSEKLGTASGSKAEFNSRQ 483
Query: 474 VAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRL 533
++A L L IS PLS +Q++ SIPP FSY++ +LG+ S L D+M+Q L+AYL+ C+ L
Sbjct: 484 LSASLTLIISAPLSNKQSITSIPPLAFSYSLAMLGKFSSGLHDMMDQDMLLAYLTHCAIL 543
Query: 534 SNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQKSSDEASKSRSWIHGKLKETAT 593
S+ S F D H + D N + + + D ++S+
Sbjct: 544 SSSSGTEFNKGDVFFHAYR--DSNA----DLAGNPVLLPGKDIPAESKYM---------A 588
Query: 594 SRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDG 653
+ +LE ++ K +N +L K++ W L QSG SKEALR LRACK+E+ T A+S G
Sbjct: 589 CKAELEIGNQALKFVNHILLKIKAAWLLSQSGCSKEALRALRACKQELATLTADSSISKG 648
Query: 654 ALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKX 713
L F QY V++LL + W F +++I E+E L+ +++ L E+RCRF GLS
Sbjct: 649 TLDFICQYVHVIELLVQVWPHFNYSRHISTCSSVEVELLMEEVEIKLMEIRCRFTGLS-T 707
Query: 714 XXXXXXXXXXXSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKS 773
CLLRL KFEIC + M LSSTIS LE H+Q T+PS+F+T KKS
Sbjct: 708 EESLVLELVIFGCLLRLYKFEICCRLSCMEKLSSTISQLELHHEQQCTKPSDFLTETKKS 767
Query: 774 LFEINISH--TSYRPXXXXXXXXXXXXXXXVFHGRLEHVHAELGVPDNSSENPVIFVSGL 831
L E S S R F L+ V AE+ VP N +P+ FV GL
Sbjct: 768 LEEFGSSDDINSCRLLDLIKIFKCFSPEQFTFSVNLQCVSAEVEVPGNGPYSPISFVPGL 827
Query: 832 PVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPK 891
PV+IP EITL N+ LWLR++ +DET QFV+LD NL G K+F + A Y TP+
Sbjct: 828 PVAIPCEITLLNVPRDTCLWLRISRNDETCQFVYLDPNLYNGNGREKRFMFTAVTYMTPR 887
Query: 892 AS-FTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSR 938
A FTLRV IG+ECLFEDI K GPK +AYLC E+E++ S VSR
Sbjct: 888 AVVFTLRVSIGIECLFEDICYRKQRHGPKHPVAYLCKEREIHLSLVSR 935
>FB|FBgn0026679 [details] [associations]
symbol:IntS4 "Integrator 4" species:7227 "Drosophila
melanogaster" [GO:0003674 "molecular_function" evidence=ND]
[GO:0016180 "snRNA processing" evidence=ISS;IMP] [GO:0034472 "snRNA
3'-end processing" evidence=IDA] [GO:0032039 "integrator complex"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000357 InterPro:IPR016024 Pfam:PF02985 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0022008 EMBL:AE014298
eggNOG:NOG269182 KO:K13141 CTD:92105 GeneTree:ENSGT00390000010128
GO:GO:0034472 EMBL:AY051460 RefSeq:NP_572488.1 UniGene:Dm.4600
SMR:Q9W3E1 IntAct:Q9W3E1 MINT:MINT-808920
EnsemblMetazoa:FBtr0071234 GeneID:31793 KEGG:dme:Dmel_CG12113
UCSC:CG12113-RA FlyBase:FBgn0026679 InParanoid:Q9W3E1 OMA:RCVANIL
OrthoDB:EOG4S7H4W GenomeRNAi:31793 NextBio:775326 Uniprot:Q9W3E1
Length = 1022
Score = 211 (79.3 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 51/159 (32%), Positives = 82/159 (51%)
Query: 293 AECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDS 352
A+ I AS A G +HG EDEF EVR +A +S+ L + FA +L+ LVDM ND+
Sbjct: 422 AQSISIIASGACGALIHGLEDEFLEVRTAAVASMCKLALSRPDFAVTSLDFLVDMFNDEI 481
Query: 353 VTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFF 412
VRL+A+ ++ + +H+ L + + + LG+L D S VR +L +
Sbjct: 482 EDVRLKAIYSLTAIA--KHIVLREDQLEIMLGSLEDYSVDVREGLHLMLGACRVSTQTCL 539
Query: 413 RLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACI 451
+ + LL+ L YPQD ++ + IG+ H + +
Sbjct: 540 LMVVQKLLDVLAKYPQDRNSTYACMRKIGQKHPHLVMAV 578
Score = 120 (47.3 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 31/105 (29%), Positives = 55/105 (52%)
Query: 193 RAVELLRDHEDCVRCAAVRVVSEWGKM----LIACIDEKNRIDCSDVVFIQLCSMIRDMR 248
RAVE ++D +CVR A+++V G ++ ++ + D F ++C + D+
Sbjct: 293 RAVEAMKDDYECVRKEALQLVFMLGNRHPDYILPSDRQQEELRMIDAAFSKVCEALCDLS 352
Query: 249 MEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKF-HSLGA 292
+++RV A LG + +S L QTL KK++ + K+ H GA
Sbjct: 353 LQIRVLAAELLGGMTAVSREFLHQTLDKKLMSNLRRKRTAHERGA 397
Score = 48 (22.0 bits), Expect = 8.4e-12, Sum P(4) = 8.4e-12
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 135 LLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLL 176
LL ER + P +L+ + KD Y VR+ AL LV +L
Sbjct: 276 LLTLGERGSQLPAVLYKRAVEAMKDDYECVRKEALQ-LVFML 316
Score = 41 (19.5 bits), Expect = 5.0e-19, Sum P(4) = 5.0e-19
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 817 PDNSSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRM 854
P S +N + +GL ++PF + N+ + +R+
Sbjct: 900 PLQSQDNVIKVTAGLIAAVPFVAEIDNLLESQKADMRI 937
Score = 38 (18.4 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 882 YVAPFYRTPK 891
YV PF+ TP+
Sbjct: 584 YVHPFFETPE 593
Score = 37 (18.1 bits), Expect = 5.0e-19, Sum P(4) = 5.0e-19
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 623 QSGFSKEALRILRACKEEVLTFKAE 647
Q+G S E L+++ + EE+ T E
Sbjct: 664 QAGSSAEYLQMILSHIEEIFTMTDE 688
>WB|WBGene00012234 [details] [associations]
symbol:W04A4.5 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] InterPro:IPR016024
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0002119
GO:GO:0016246 GO:GO:0010171 GO:GO:0040011 GO:GO:0019915
GO:GO:0040035 GO:GO:0001703 eggNOG:NOG269182 KO:K13141
GeneTree:ENSGT00390000010128 EMBL:Z82068 PIR:T26134
RefSeq:NP_493396.1 ProteinModelPortal:O18167 SMR:O18167
PaxDb:O18167 EnsemblMetazoa:W04A4.5 GeneID:173238
KEGG:cel:CELE_W04A4.5 UCSC:W04A4.5 CTD:173238 WormBase:W04A4.5
HOGENOM:HOG000021699 InParanoid:O18167 OMA:LIFHTRE NextBio:878837
Uniprot:O18167
Length = 1071
Score = 205 (77.2 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 48/143 (33%), Positives = 74/143 (51%)
Query: 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALET 362
A G FV EDEF +VRK+A SLG L FA AL L DM ND+ VRL A+
Sbjct: 491 ACGAFVSALEDEFMDVRKAAVYSLGRLACTRPTFAVSALEYLADMFNDEMADVRLDAINA 550
Query: 363 MHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLEN 422
+ ++ H + + +++ L D R A R++LK + L + + LL
Sbjct: 551 LTPLIA--HGQINSEQLNVISKCLDDAMPEARQAMRELLKRAQFVDLNCIEMCVKALLSC 608
Query: 423 LKIYPQDEADVFSVLFFIGRSHG 445
LK +P+D+ +++ + IG++HG
Sbjct: 609 LKRFPKDKDEIYGCMADIGKNHG 631
Score = 104 (41.7 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 35/123 (28%), Positives = 59/123 (47%)
Query: 164 VREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIAC 223
VR++A GL+ L VF+ L + A + D + +R AA++++ +
Sbjct: 291 VRKSAAEGLLALSN--VFK---LSKATYQLAKTHMADSDSDIRIAAIKLLIFYANRRGEE 345
Query: 224 IDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATK 283
E D F +C I D+ + VRVEA LG +SE ++ QTL KK++ +T
Sbjct: 346 EIEGTNKKLYDDAFSSICDAINDIEIGVRVEAAKKLGDFEQVSEELIYQTLDKKMMRSTT 405
Query: 284 EKK 286
++
Sbjct: 406 NQQ 408
Score = 55 (24.4 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 805 GRLEHVHAELGVP--DNSSENPVIFVSGLPVSIPFEITLYNI 844
G + +A + P D++ EN + F + LP IP E L+N+
Sbjct: 938 GSIHLKYARITNPNKDSAVENVLKFFAHLPHGIPLEFDLFNM 979
>DICTYBASE|DDB_G0286633 [details] [associations]
symbol:ints4 "integrator complex subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR016024 dictyBase:DDB_G0286633
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GenomeReviews:CM000153_GR EMBL:AAFI02000089
RefSeq:XP_637586.1 ProteinModelPortal:Q54LH5
EnsemblProtists:DDB0234080 GeneID:8625726 KEGG:ddi:DDB_G0286633
eggNOG:NOG269182 KO:K13141 OMA:NCACKLL Uniprot:Q54LH5
Length = 1233
Score = 228 (85.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 63/225 (28%), Positives = 117/225 (52%)
Query: 281 ATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEA 340
AT E F +G+ + I S G F+ G EDEFYEVR SA S+ L + +++FA +
Sbjct: 471 ATPEGDFDVVGS-DSLNILESGVIGAFIQGLEDEFYEVRSSAIDSMCELSVRNDEFAQKN 529
Query: 341 LNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKI 400
++ LVD+ ND+ +VR+ ++ ++ + ++ ++++ +H+ L L +S+ R + ++
Sbjct: 530 IDFLVDIFNDEIESVRINSINSLRKIGN--NVVIKEEQLHIILANLESSSKEERQSLHRL 587
Query: 401 LKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIE 460
L + LL NL YP D +F L IG+++ F I+ ++ + I+
Sbjct: 588 LTSIHLSNYSCLHATTQALLMNLSRYPYDIHSIFETLKIIGQTNP-FTEFIVDDLLR-ID 645
Query: 461 PD-SDDKLGFDNARVAAFLVLAISVPLSC--EQNVRSIPPQIFSY 502
P + + D+ A +VL ++ SC +N+ S+ P FS+
Sbjct: 646 PKFASVEPNMDDIFYVAVMVLVLN---SCIKNRNILSLLPS-FSF 686
Score = 89 (36.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 39/137 (28%), Positives = 64/137 (46%)
Query: 154 LGLTKDPYPYVREAALNGLVCLLKHVVFEDVD-LIQGCCCRAVELLRDHEDCVRCAAVRV 212
L KD VREA+L L + + V+ L Q + LL D + VR +++
Sbjct: 283 LNYLKDTDFRVREASLKSLSVIFQRGASLSVNKLYQSI----ILLLLDSFEQVRLECIKL 338
Query: 213 VSEWGKMLI--ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVL 270
+ +G + + +I D VF ++C+ + D + VR A LG +S L
Sbjct: 339 IWIFGNIYPNHIVVSGGTKIRLVDDVFKKICNAVNDSSVIVRNCACKLLGCTYDVSLNYL 398
Query: 271 LQTLSKKVLGATKEKKF 287
+QTLSK+V+ K K++
Sbjct: 399 IQTLSKEVMVWGKGKQY 415
>UNIPROTKB|Q96HW7 [details] [associations]
symbol:INTS4 "Integrator complex subunit 4" species:9606
"Homo sapiens" [GO:0005515 "protein binding" evidence=IPI]
[GO:0016180 "snRNA processing" evidence=IDA] [GO:0032039
"integrator complex" evidence=IDA] InterPro:IPR016024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0032039 GO:GO:0016180 KO:K13141 EMBL:AF172822
EMBL:BC006369 EMBL:BC008013 EMBL:BC009859 EMBL:BC009995
EMBL:BC015664 EMBL:BK005723 IPI:IPI00419468 IPI:IPI00446765
IPI:IPI00748403 IPI:IPI00795935 RefSeq:NP_291025.3
UniGene:Hs.533723 ProteinModelPortal:Q96HW7 SMR:Q96HW7
IntAct:Q96HW7 STRING:Q96HW7 PhosphoSite:Q96HW7 DMDM:118572560
PRIDE:Q96HW7 DNASU:92105 Ensembl:ENST00000529807
Ensembl:ENST00000534064 Ensembl:ENST00000535943 GeneID:92105
KEGG:hsa:92105 UCSC:uc001oys.3 CTD:92105 GeneCards:GC11M077589
H-InvDB:HIX0022772 H-InvDB:HIX0023207 H-InvDB:HIX0058362
HGNC:HGNC:25048 HPA:HPA042378 MIM:611348 neXtProt:NX_Q96HW7
PharmGKB:PA144596421 HOVERGEN:HBG081801 InParanoid:Q96HW7
OMA:FNAAKSC OrthoDB:EOG4ZGPBK ChiTaRS:IntS4 GenomeRNAi:92105
NextBio:77589 ArrayExpress:Q96HW7 Bgee:Q96HW7 CleanEx:HS_INTS4
Genevestigator:Q96HW7 GermOnline:ENSG00000149262 Uniprot:Q96HW7
Length = 963
Score = 235 (87.8 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 66/199 (33%), Positives = 94/199 (47%)
Query: 291 GAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350
GA E S A G FVHG EDE YEVR +A +L L S FA + L+ LVDM ND
Sbjct: 366 GAVNLIE---SGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFND 422
Query: 351 DSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLE 410
+ VRLQ++ TM + ++ L + + L L D+S +R A ++L E
Sbjct: 423 EIEEVRLQSIHTMRKI--SNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKE 480
Query: 411 FFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDD-KLGF 469
L + LL+NL YP D ++ L F+G H ++ E+ P D +
Sbjct: 481 GIHLALVELLKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLST-HPFFDTAEPDM 539
Query: 470 DNARVAAFLVLAISVPLSC 488
D+ A LVL + +C
Sbjct: 540 DDPAYIAVLVLIFNAAKTC 558
Score = 126 (49.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 69/240 (28%), Positives = 103/240 (42%)
Query: 159 DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR---VVSE 215
D P VR AA+ ++ L H + L Q +A +LL D + VR AAV+ VVS+
Sbjct: 206 DQDPRVRTAAIKAMLQL--HE--RGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQ 261
Query: 216 WGKMLIACIDEKNR-IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTL 274
I I N I D F ++C M+ D VRV+A LG + +S L QTL
Sbjct: 262 LYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTL 321
Query: 275 SKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE 334
KK++ + K+ A E + S ++G G + EV A + + S
Sbjct: 322 DKKLMSDLRRKRTAHERAKELYS-SGEFSSGR-KWGDDAPKEEVDTGAVNLIES------ 373
Query: 335 KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVR 394
G A V L D+ VR+ A+E + M+ + +K + + D E VR
Sbjct: 374 ---G-ACGAFVHGLEDEMYEVRIAAVEAL-CMLAQSSPSFAEKCLDFLVDMFNDEIEEVR 428
Score = 62 (26.9 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 808 EHVH---AELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSV-NRLWLRMTMSDETTQF 863
E +H A + P S+NP+ F SGL V++ + TL ++ N + +++ D Q
Sbjct: 815 EQIHKASATIIEPAGESDNPLRFTSGLVVALDVDATLEHVQDPQNTVKVQVLYPDGQAQM 874
Query: 864 V 864
+
Sbjct: 875 I 875
>UNIPROTKB|E1BLD2 [details] [associations]
symbol:INTS4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032039 "integrator complex" evidence=IEA] [GO:0016180
"snRNA processing" evidence=IEA] InterPro:IPR016024 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0032039 GO:GO:0016180
KO:K13141 CTD:92105 OMA:FNAAKSC GeneTree:ENSGT00390000010128
EMBL:DAAA02062725 EMBL:DAAA02062726 IPI:IPI00924227
RefSeq:NP_001103535.2 UniGene:Bt.36563 Ensembl:ENSBTAT00000061534
GeneID:505657 KEGG:bta:505657 NextBio:20867249 ArrayExpress:E1BLD2
Uniprot:E1BLD2
Length = 964
Score = 235 (87.8 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 66/199 (33%), Positives = 94/199 (47%)
Query: 291 GAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350
GA E S A G FVHG EDE YEVR +A +L L S FA + L+ LVDM ND
Sbjct: 367 GAVNLIE---SGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFND 423
Query: 351 DSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLE 410
+ VRLQ++ TM + ++ L + + L L D+S +R A ++L E
Sbjct: 424 EIEEVRLQSIHTMRKI--SNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKE 481
Query: 411 FFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDD-KLGF 469
L + LL+NL YP D ++ L F+G H ++ E+ P D +
Sbjct: 482 GIHLALVELLKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLST-HPFFDTAEPDM 540
Query: 470 DNARVAAFLVLAISVPLSC 488
D+ A LVL + +C
Sbjct: 541 DDPAYIAVLVLIFNAAKTC 559
Score = 125 (49.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 68/240 (28%), Positives = 103/240 (42%)
Query: 159 DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR---VVSE 215
D P VR AA+ ++ L H + L Q +A +LL D + VR AAV+ VVS+
Sbjct: 207 DQDPRVRTAAIKAMLQL--HE--RGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQ 262
Query: 216 WGKMLIACIDEKNR-IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTL 274
I I N I D F ++C M+ D VRV+A LG + +S L QTL
Sbjct: 263 LYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWMVRVQAAKLLGSMEQVSSHFLEQTL 322
Query: 275 SKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE 334
KK++ + K+ A E + S ++G G + E+ A + + S
Sbjct: 323 DKKLMSDLRRKRTAHERAKELYS-SGEFSSGR-KWGDDAPKEEIDTGAVNLIES------ 374
Query: 335 KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVR 394
G A V L D+ VR+ A+E + M+ + +K + + D E VR
Sbjct: 375 ---G-ACGAFVHGLEDEMYEVRIAAVEAL-CMLAQSSPSFAEKCLDFLVDMFNDEIEEVR 429
Score = 62 (26.9 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 808 EHVH---AELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSV-NRLWLRMTMSDETTQF 863
E +H A + P S+NP+ F SGL V++ + TL ++ N + +++ D Q
Sbjct: 816 EQIHKASATIIEPAGESDNPLRFTSGLVVALDVDATLEHVQDPQNTVKVQVLYPDGQAQM 875
Query: 864 V 864
+
Sbjct: 876 I 876
>MGI|MGI:1917164 [details] [associations]
symbol:Ints4 "integrator complex subunit 4" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016180 "snRNA processing"
evidence=ISO] [GO:0032039 "integrator complex" evidence=ISO]
InterPro:IPR000357 InterPro:IPR016024 Pfam:PF02985 MGI:MGI:1917164
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0032039 GO:GO:0016180 eggNOG:NOG269182
KO:K13141 CTD:92105 HOVERGEN:HBG081801 OMA:FNAAKSC
OrthoDB:EOG4ZGPBK EMBL:AK011676 EMBL:AK088635 EMBL:AK163383
EMBL:BC013710 EMBL:BC013813 IPI:IPI00229883 IPI:IPI00798552
IPI:IPI00798581 RefSeq:NP_081532.1 UniGene:Mm.27383
ProteinModelPortal:Q8CIM8 SMR:Q8CIM8 STRING:Q8CIM8
PhosphoSite:Q8CIM8 PaxDb:Q8CIM8 PRIDE:Q8CIM8
Ensembl:ENSMUST00000026126 GeneID:101861 KEGG:mmu:101861
UCSC:uc009ijg.2 UCSC:uc009ijh.2 UCSC:uc009iji.2
GeneTree:ENSGT00390000010128 HOGENOM:HOG000007958 InParanoid:Q8CIM8
NextBio:355146 Bgee:Q8CIM8 CleanEx:MM_INTS4 Genevestigator:Q8CIM8
Uniprot:Q8CIM8
Length = 964
Score = 235 (87.8 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 66/199 (33%), Positives = 94/199 (47%)
Query: 291 GAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350
GA E S A G FVHG EDE YEVR +A +L L S FA + L+ LVDM ND
Sbjct: 367 GAVNLIE---SGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFND 423
Query: 351 DSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLE 410
+ VRLQ++ TM + ++ L + + L L D+S +R A ++L E
Sbjct: 424 EIEEVRLQSIHTMRKI--SNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKE 481
Query: 411 FFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDD-KLGF 469
L + LL+NL YP D ++ L F+G H ++ E+ P D +
Sbjct: 482 GIHLALVELLKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLST-HPFFDTAEPDM 540
Query: 470 DNARVAAFLVLAISVPLSC 488
D+ A LVL + +C
Sbjct: 541 DDPAYIAVLVLIFNAAKTC 559
Score = 125 (49.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 68/240 (28%), Positives = 103/240 (42%)
Query: 159 DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR---VVSE 215
D P VR AA+ ++ L H + L Q +A +LL D + VR AAV+ VVS+
Sbjct: 207 DQDPRVRTAAIKAMLQL--HE--RGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQ 262
Query: 216 WGKMLIACIDEKNR-IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTL 274
I I N I D F ++C M+ D VRV+A LG + +S L QTL
Sbjct: 263 LYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTL 322
Query: 275 SKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE 334
KK++ + K+ A E + S ++G G + E+ A + + S
Sbjct: 323 DKKLMSDLRRKRTAHERAKELYS-SGEFSSGR-KWGDDAPKEEIDTGAVNLIES------ 374
Query: 335 KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVR 394
G A V L D+ VR+ A+E + M+ + +K + + D E VR
Sbjct: 375 ---G-ACGAFVHGLEDEMYEVRIAAVEAL-CMLAQSSPSFAEKCLDFLVDMFNDEIEEVR 429
Score = 62 (26.9 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 808 EHVH---AELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSV-NRLWLRMTMSDETTQF 863
E +H A + P S+NP+ F SGL V++ + TL ++ N + +++ D Q
Sbjct: 816 EQIHKASATIIEPAGESDNPLRFTSGLVVALDVDATLEHVQDPQNTVKVQVLYPDGQAQM 875
Query: 864 V 864
+
Sbjct: 876 I 876
>UNIPROTKB|D3ZZQ6 [details] [associations]
symbol:Ints4 "Protein Ints4" species:10116 "Rattus
norvegicus" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR016024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0032039
GO:GO:0016180 KO:K13141 CTD:92105 OMA:FNAAKSC OrthoDB:EOG4ZGPBK
GeneTree:ENSGT00390000010128 IPI:IPI00991147 RefSeq:NP_001178558.1
UniGene:Rn.1948 ProteinModelPortal:D3ZZQ6
Ensembl:ENSRNOT00000016770 GeneID:308837 KEGG:rno:308837
NextBio:659627 ArrayExpress:D3ZZQ6 Uniprot:D3ZZQ6
Length = 964
Score = 235 (87.8 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 66/199 (33%), Positives = 94/199 (47%)
Query: 291 GAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350
GA E S A G FVHG EDE YEVR +A +L L S FA + L+ LVDM ND
Sbjct: 367 GAVNLIE---SGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFND 423
Query: 351 DSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLE 410
+ VRLQ++ TM + ++ L + + L L D+S +R A ++L E
Sbjct: 424 EIEEVRLQSIHTMRKI--SNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKE 481
Query: 411 FFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDD-KLGF 469
L + LL+NL YP D ++ L F+G H ++ E+ P D +
Sbjct: 482 GIHLALVELLKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLST-HPFFDTAEPDM 540
Query: 470 DNARVAAFLVLAISVPLSC 488
D+ A LVL + +C
Sbjct: 541 DDPAYIAVLVLIFNAAKTC 559
Score = 125 (49.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 68/240 (28%), Positives = 103/240 (42%)
Query: 159 DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR---VVSE 215
D P VR AA+ ++ L H + L Q +A +LL D + VR AAV+ VVS+
Sbjct: 207 DQDPRVRTAAIKAMLQL--HE--RGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQ 262
Query: 216 WGKMLIACIDEKNR-IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTL 274
I I N I D F ++C M+ D VRV+A LG + +S L QTL
Sbjct: 263 LYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTL 322
Query: 275 SKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE 334
KK++ + K+ A E + S ++G G + E+ A + + S
Sbjct: 323 DKKLMSDLRRKRTAHERAKELYS-SGEFSSGR-KWGDDAPKEEIDTGAVNLIES------ 374
Query: 335 KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVR 394
G A V L D+ VR+ A+E + M+ + +K + + D E VR
Sbjct: 375 ---G-ACGAFVHGLEDEMYEVRIAAVEAL-CMLAQSSPSFAEKCLDFLVDMFNDEIEEVR 429
Score = 62 (26.9 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 808 EHVH---AELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSV-NRLWLRMTMSDETTQF 863
E +H A + P S+NP+ F SGL V++ + TL ++ N + +++ D Q
Sbjct: 816 EQIHKASATIIEPAGESDNPLRFTSGLVVALDVDATLEHVQDPQNSVKVQVLYPDGQAQM 875
Query: 864 V 864
+
Sbjct: 876 I 876
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 939 847 0.00082 122 3 11 22 0.47 33
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 624 (66 KB)
Total size of DFA: 427 KB (2204 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 71.45u 0.08s 71.53t Elapsed: 00:00:07
Total cpu time: 71.45u 0.08s 71.53t Elapsed: 00:00:07
Start: Sat May 11 13:08:46 2013 End: Sat May 11 13:08:53 2013