BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002304
(939 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68F70|INT4_XENLA Integrator complex subunit 4 OS=Xenopus laevis GN=ints4 PE=2 SV=1
Length = 969
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 155/342 (45%), Gaps = 41/342 (11%)
Query: 159 DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR---VVSE 215
D P VR AA+ ++ L + + L Q +A +LL D + VR AAV V+S+
Sbjct: 208 DQDPRVRTAAIKAMLQLHER----GLKLQQAMYNQACKLLTDDYEQVRSAAVELSWVLSQ 263
Query: 216 -WGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTL 274
+ + ++ I D F ++C M+ D VRV+A LG + +S L QTL
Sbjct: 264 LYSESIVPIPSSNEEIRLVDDAFGKVCHMVSDGSWVVRVQACKLLGSMLQVSPHFLEQTL 323
Query: 275 SKKVLGATKEKKFHSLGAAECF---EISA----------------------SAAAGTFVH 309
KK++ + K+ A E + E S+ S A G FVH
Sbjct: 324 DKKLMSDLRRKRTAHERAKELYSSGEFSSGRKWGDDAPKEELDTGAVNLIDSGACGAFVH 383
Query: 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC 369
G EDE YEVR +A SL L S FA + L+ LVDM ND+ VRLQ++ TM +
Sbjct: 384 GLEDEMYEVRIAAVESLCLLARSSAPFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKI--S 441
Query: 370 EHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD 429
+++ L + + L L D S +R A ++L E +L + LL+NL YP D
Sbjct: 442 DNITLREDQLDTVLAVLEDKSRDIREALHELLCCTNVSTKECIQLALVELLKNLSKYPTD 501
Query: 430 EADVFSVLFFIGRSHGNFAACIIKEVC------QEIEPDSDD 465
++ L F+G H ++ E+ EPD DD
Sbjct: 502 RESIWKCLKFLGSRHPTLVLSLVPELLSTHPFFDTPEPDMDD 543
>sp|Q8CIM8|INT4_MOUSE Integrator complex subunit 4 OS=Mus musculus GN=Ints4 PE=2 SV=1
Length = 964
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 144/315 (45%), Gaps = 35/315 (11%)
Query: 159 DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR---VVSE 215
D P VR AA+ ++ L + + L Q +A +LL D + VR AAV+ VVS+
Sbjct: 207 DQDPRVRTAAIKAMLQLHER----GLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQ 262
Query: 216 WGKMLIACIDEKNR-IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTL 274
I I N I D F ++C M+ D VRV+A LG + +S L QTL
Sbjct: 263 LYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTL 322
Query: 275 SKKVLGATKEKKFHSLGAAECF------------------EISA-------SAAAGTFVH 309
KK++ + K+ A E + EI S A G FVH
Sbjct: 323 DKKLMSDLRRKRTAHERAKELYSSGEFSSGRKWGDDAPKEEIDTGAVNLIESGACGAFVH 382
Query: 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC 369
G EDE YEVR +A +L L S FA + L+ LVDM ND+ VRLQ++ TM +
Sbjct: 383 GLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKI--S 440
Query: 370 EHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD 429
++ L + + L L D+S +R A ++L E L + LL+NL YP D
Sbjct: 441 NNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKEGIHLALVELLKNLTKYPTD 500
Query: 430 EADVFSVLFFIGRSH 444
++ L F+G H
Sbjct: 501 RDSIWKCLKFLGSRH 515
>sp|Q96HW7|INT4_HUMAN Integrator complex subunit 4 OS=Homo sapiens GN=INTS4 PE=1 SV=2
Length = 963
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 145/315 (46%), Gaps = 35/315 (11%)
Query: 159 DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR---VVSE 215
D P VR AA+ ++ L + + L Q +A +LL D + VR AAV+ VVS+
Sbjct: 206 DQDPRVRTAAIKAMLQLHER----GLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQ 261
Query: 216 WGKMLIACIDEKNR-IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTL 274
I I N I D F ++C M+ D VRV+A LG + +S L QTL
Sbjct: 262 LYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTL 321
Query: 275 SKKVLGATKEKKFHSLGAAECF---EISA----------------------SAAAGTFVH 309
KK++ + K+ A E + E S+ S A G FVH
Sbjct: 322 DKKLMSDLRRKRTAHERAKELYSSGEFSSGRKWGDDAPKEEVDTGAVNLIESGACGAFVH 381
Query: 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC 369
G EDE YEVR +A +L L S FA + L+ LVDM ND+ VRLQ++ TM +
Sbjct: 382 GLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKI--S 439
Query: 370 EHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD 429
++ L + + L L D+S +R A ++L E L + LL+NL YP D
Sbjct: 440 NNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKEGIHLALVELLKNLTKYPTD 499
Query: 430 EADVFSVLFFIGRSH 444
++ L F+G H
Sbjct: 500 RDSIWKCLKFLGSRH 514
>sp|Q2T9F4|IN4L2_HUMAN Integrator complex subunit 4-like protein 2 OS=Homo sapiens
GN=INTS4L2 PE=2 SV=1
Length = 439
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 120/266 (45%), Gaps = 29/266 (10%)
Query: 204 CVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVG 263
C + R W + I +E+ R+ D F ++C M+ D V V+A LG +
Sbjct: 43 CPTTSPSRRYGPWSIVPIPSSNEEIRL--VDDAFGKICHMVSDGSWVVHVQAAKLLGSME 100
Query: 264 MISEIVLLQTLSKKVLGATKEKKFHSLGAAECF---EISA-------------------- 300
+S L QTL KK++ + K+ A E + E S+
Sbjct: 101 QVSSHFLEQTLDKKLMSDLRRKRTAHERAKELYSSGEFSSGRKWEDDAPKEEVDTGAVNL 160
Query: 301 --SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQ 358
S A G FVHG EDE YEVR +A +L L S FA + L+ LVDM ND+ VRLQ
Sbjct: 161 IESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQ 220
Query: 359 ALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDG 418
++ TM + ++ L + + L L D++ +R A ++L E L +
Sbjct: 221 SIHTMRKI--SNNITLREDQLDTVLAVLEDSARDIREALHELLCCTNVSTKEGIHLALVE 278
Query: 419 LLENLKIYPQDEADVFSVLFFIGRSH 444
LL+NL YP D ++ L F+G H
Sbjct: 279 LLKNLTKYPTDRDSIWKCLKFLGSRH 304
>sp|Q96LV5|IN4L1_HUMAN Integrator complex subunit 4-like protein 1 OS=Homo sapiens
GN=INTS4L1 PE=2 SV=1
Length = 439
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 119/266 (44%), Gaps = 29/266 (10%)
Query: 204 CVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVG 263
C R W + I +E+ R+ D F ++C M+ D V V+A LG +
Sbjct: 43 CPTTLPSRRYGPWNIVPIPSSNEEIRL--VDDAFGKICHMVGDGSWVVHVQAAKLLGSME 100
Query: 264 MISEIVLLQTLSKKVLGATKEKKFHSLGAAECF---EISA-------------------- 300
+S L QTL KK++ + K+ A E + E S+
Sbjct: 101 QVSSHFLEQTLDKKLMSDLRRKRTAHERAKELYSSGEFSSGRKWEDDAPKEEVDTGAVNL 160
Query: 301 --SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQ 358
S A G FVHG EDE YEVR +A +L L S FA + L+ LVDM ND+ VRLQ
Sbjct: 161 IESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQ 220
Query: 359 ALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDG 418
++ TM + ++ L + + L L D+S +R A ++L E L +
Sbjct: 221 SIHTMRKISN--NITLREDQLDTVLAVLEDSSRGIREALHELLCCTNVSTKEGIHLALVE 278
Query: 419 LLENLKIYPQDEADVFSVLFFIGRSH 444
LL+NL YP D ++ L F+G H
Sbjct: 279 LLKNLTKYPTDRDSIWKCLKFLGSRH 304
>sp|Q54LH5|INT4_DICDI Integrator complex subunit 4 homolog OS=Dictyostelium discoideum
GN=ints4 PE=3 SV=1
Length = 1233
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 99/191 (51%), Gaps = 10/191 (5%)
Query: 281 ATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEA 340
AT E F +G+ + I S G F+ G EDEFYEVR SA S+ L + +++FA +
Sbjct: 471 ATPEGDFDVVGS-DSLNILESGVIGAFIQGLEDEFYEVRSSAIDSMCELSVRNDEFAQKN 529
Query: 341 LNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKI 400
++ LVD+ ND+ +VR+ ++ ++ + ++ ++++ +H+ L L +S+ R + ++
Sbjct: 530 IDFLVDIFNDEIESVRINSINSLRKI--GNNVVIKEEQLHIILANLESSSKEERQSLHRL 587
Query: 401 LKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQ--- 457
L + LL NL YP D +F L IG+++ F I+ ++ +
Sbjct: 588 LTSIHLSNYSCLHATTQALLMNLSRYPYDIHSIFETLKIIGQTNP-FTEFIVDDLLRIDP 646
Query: 458 ---EIEPDSDD 465
+EP+ DD
Sbjct: 647 KFASVEPNMDD 657
Score = 36.6 bits (83), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 154 LGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVV 213
L KD VREA+L L + + V+ + + LL D + VR ++++
Sbjct: 283 LNYLKDTDFRVREASLKSLSVIFQRGASLSVNKLYQSI---ILLLLDSFEQVRLECIKLI 339
Query: 214 SEWGKMLI--ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLL 271
+G + + +I D VF ++C+ + D + VR A LG +S L+
Sbjct: 340 WIFGNIYPNHIVVSGGTKIRLVDDVFKKICNAVNDSSVIVRNCACKLLGCTYDVSLNYLI 399
Query: 272 QTLSKKVLGATKEKKFH 288
QTLSK+V+ K K++
Sbjct: 400 QTLSKEVMVWGKGKQYQ 416
>sp|Q86WZ0|HEAT4_HUMAN HEAT repeat-containing protein 4 OS=Homo sapiens GN=HEATR4 PE=2
SV=2
Length = 1026
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 215 EWGKMLIACIDEKNRID---CSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLL 271
+W ++AC +RI C D+ + M D EVR A ALG++ + E+
Sbjct: 642 QWKNRIVAC-QAFSRISGNVCLDMKHKLIQLMWNDWNKEVRRAAAQALGQMSLGKEV--H 698
Query: 272 QTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVI 331
+ K+ +++ +L ++ + +F+H F D+F VR++AC + G+L I
Sbjct: 699 DIIRVKLGQGNSQERVEALYLIGELKLMTAKLLPSFLHCFSDDFTAVRRAACLAAGALQI 758
Query: 332 LSEKFAGEALNLL 344
+ LNL+
Sbjct: 759 RDKMVLECLLNLM 771
>sp|P06598|ACOX4_CANTR Acyl-coenzyme A oxidase 4 OS=Candida tropicalis GN=POX4 PE=2 SV=3
Length = 709
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 411 FFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDK--LG 468
+ RL +DG +K + V+ +H + ++ ++ D D +
Sbjct: 209 YARLIVDGQDYGVKTF---------VVPLRDSNHDLMPGVTVGDIGPKMGRDGIDNGWIQ 259
Query: 469 FDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLS 528
F N R+ F +L +S E V P + SY+ L GR+ V++ + ++A +S
Sbjct: 260 FSNVRIPRFFMLQKFCKVSAEGEVTLPPLEQLSYSALLGGRVMM----VLDSYRMLARMS 315
Query: 529 LCSRLSNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQK 572
+ FKG++ +DPN I +H ++
Sbjct: 316 TIALRYAIGRRQFKGDN-----VDPNDPNALETQLIDYPLHQKR 354
>sp|Q09543|2AAA_CAEEL Probable serine/threonine-protein phosphatase PP2A regulatory
subunit OS=Caenorhabditis elegans GN=paa-1 PE=3 SV=2
Length = 590
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 156 LTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSE 215
L +D P VR AA L K VFE +I+G +L D +D VR V
Sbjct: 175 LCRDDTPMVRRAAAAKLGEFAK--VFEKTAVIEGLHSSLTDLHVDEQDSVRLLTVESAIA 232
Query: 216 WGKMLIACIDEKNRIDCSDVVFIQLCS----MIRDMRMEVRVEAFNALGK 261
+G +L D+ N+ + + I+L +R M E +E N LG+
Sbjct: 233 FGTLL----DKANKKKLIEPILIELFDDKSWRVRYMVAEKLIEIQNVLGE 278
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 35.0 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 244 IRDMRMEV-RVEAFNALGK-VGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA- 300
+R+M E R++ + K +G+ + + T SK GA E L A E EI
Sbjct: 34 VREMEEEAERLKGLSGQDKSIGVSTRPCMQTTHSKMTAGAYTEGPPQPLSAEEKKEIDKR 93
Query: 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAG 338
S G +G + E S+C S+ + IL +KF+G
Sbjct: 94 SVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSG 131
>sp|Q6BKJ4|LONM_DEBHA Lon protease homolog, mitochondrial OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=PIM1 PE=3 SV=2
Length = 1079
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 754 FLHQQGSTEPSNFVTAVKKSLFEIN-----ISHTSYRPSLFNQL---LNSFSLSQLVFHG 805
H + S EP V K S+++I I HT+ RP +FN L L L +L
Sbjct: 207 LFHVKDSNEPDTDVINKKDSVYDIGVHCQIIRHTTPRPGVFNVLGYPLERCKLEELTTPS 266
Query: 806 RLEHVHAELGVPDNSSENPVIFVSGLPVSI----PFEITLYNISSV 847
+ +E +++ P ++ GL VS P E Y+ SS
Sbjct: 267 SEKEAKSEEPSKEDAESFPTSYLKGLNVSYATVKPVEDEPYDKSSA 312
>sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic subunit OS=Canis familiaris
GN=PRKDC PE=2 SV=1
Length = 4144
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 278 VLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGS-LVILSEKF 336
VL + + HS+G F + S A G E E++ +C L S L+ L+ F
Sbjct: 1480 VLPSQSADQRHSVGIKLLFLVYKSIAPGD-----EREYFPSLDPSCKRLASGLLELAFAF 1534
Query: 337 AGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCA 396
G +L VD+L D +V + E+ MV+ H ++ + ++ N+EL+R
Sbjct: 1535 GGLCEHL-VDLLLDTAVLSMPASGESQRNMVSFSH----GEYFYSLFSEII-NTELLRNL 1588
Query: 397 ARKILKLVKT----PKLEFFRLFIDGLLEN 422
+LKL+K+ PK+ ++G+L+
Sbjct: 1589 DMTVLKLMKSSVDNPKM--VSAILNGMLDQ 1616
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 320,835,440
Number of Sequences: 539616
Number of extensions: 12817060
Number of successful extensions: 30459
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 30374
Number of HSP's gapped (non-prelim): 91
length of query: 939
length of database: 191,569,459
effective HSP length: 127
effective length of query: 812
effective length of database: 123,038,227
effective search space: 99907040324
effective search space used: 99907040324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 66 (30.0 bits)