Query 002304
Match_columns 939
No_of_seqs 197 out of 382
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 21:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2259 Uncharacterized conser 100.0 1.1E-85 2.4E-90 744.9 34.7 726 15-939 22-823 (823)
2 PRK09687 putative lyase; Provi 99.9 2.5E-24 5.4E-29 233.9 26.1 253 150-483 25-278 (280)
3 PRK09687 putative lyase; Provi 99.9 1.7E-23 3.6E-28 227.4 27.1 226 144-438 50-278 (280)
4 PRK13800 putative oxidoreducta 99.9 4.2E-20 9.1E-25 228.5 26.1 257 150-457 623-880 (897)
5 PRK13800 putative oxidoreducta 99.8 1.2E-19 2.5E-24 224.5 26.3 288 95-439 606-896 (897)
6 COG1413 FOG: HEAT repeat [Ener 99.7 3.2E-15 6.9E-20 164.5 24.3 243 122-402 16-269 (335)
7 TIGR02270 conserved hypothetic 99.7 2.3E-15 4.9E-20 171.8 23.2 227 147-457 53-280 (410)
8 TIGR02270 conserved hypothetic 99.7 3.6E-15 7.8E-20 170.1 22.4 209 148-440 86-294 (410)
9 COG1413 FOG: HEAT repeat [Ener 99.6 1.6E-14 3.6E-19 158.9 21.5 248 144-441 70-334 (335)
10 PF01602 Adaptin_N: Adaptin N 99.4 2.6E-11 5.6E-16 140.5 24.6 313 148-484 114-441 (526)
11 KOG0211 Protein phosphatase 2A 99.4 1.8E-12 3.8E-17 156.5 14.2 256 146-440 235-499 (759)
12 PF01602 Adaptin_N: Adaptin N 99.3 2.6E-10 5.7E-15 132.2 26.7 326 99-459 42-386 (526)
13 KOG2259 Uncharacterized conser 99.3 2.8E-11 6.1E-16 140.6 14.7 273 161-466 171-499 (823)
14 KOG0166 Karyopherin (importin) 99.1 3.2E-09 6.9E-14 123.2 22.1 317 151-475 69-424 (514)
15 PF13646 HEAT_2: HEAT repeats; 99.1 3.4E-10 7.5E-15 100.7 9.8 55 304-364 33-88 (88)
16 PLN03200 cellulose synthase-in 99.1 6.3E-09 1.4E-13 135.6 23.7 224 148-404 530-762 (2102)
17 PLN03200 cellulose synthase-in 99.1 7.7E-09 1.7E-13 134.8 23.1 261 149-441 405-679 (2102)
18 PTZ00429 beta-adaptin; Provisi 99.1 4.8E-07 1E-11 110.7 36.9 338 124-485 114-469 (746)
19 KOG0567 HEAT repeat-containing 99.1 2.8E-09 6.1E-14 114.1 15.3 217 149-407 37-281 (289)
20 PF13646 HEAT_2: HEAT repeats; 99.0 9.5E-10 2.1E-14 97.8 9.6 86 304-402 1-88 (88)
21 KOG0166 Karyopherin (importin) 99.0 2.4E-08 5.1E-13 116.1 22.5 262 114-405 109-392 (514)
22 PTZ00429 beta-adaptin; Provisi 99.0 1.2E-07 2.5E-12 116.0 26.8 285 143-481 63-355 (746)
23 PF10508 Proteasom_PSMB: Prote 98.8 5.1E-07 1.1E-11 106.4 22.9 239 146-415 75-327 (503)
24 PF12717 Cnd1: non-SMC mitotic 98.7 1.3E-07 2.7E-12 96.9 12.7 144 315-459 1-155 (178)
25 KOG2171 Karyopherin (importin) 98.6 3.1E-05 6.6E-10 96.2 32.3 150 100-262 37-186 (1075)
26 KOG2023 Nuclear transport rece 98.6 3.3E-06 7.2E-11 99.4 21.1 327 100-440 129-503 (885)
27 PF10508 Proteasom_PSMB: Prote 98.5 5E-06 1.1E-10 98.1 21.4 259 153-443 43-320 (503)
28 KOG2023 Nuclear transport rece 98.5 1.9E-06 4.1E-11 101.4 16.8 355 76-464 126-574 (885)
29 KOG0567 HEAT repeat-containing 98.5 5.6E-06 1.2E-10 89.3 18.1 219 150-407 5-250 (289)
30 KOG4224 Armadillo repeat prote 98.4 4.5E-06 9.8E-11 93.0 14.5 297 141-444 160-495 (550)
31 KOG1240 Protein kinase contain 98.3 1.6E-05 3.6E-10 98.4 19.3 272 161-440 436-723 (1431)
32 KOG0211 Protein phosphatase 2A 98.3 1.3E-05 2.8E-10 98.0 17.5 228 142-404 392-623 (759)
33 KOG2171 Karyopherin (importin) 98.3 5.3E-05 1.1E-09 94.2 22.3 261 165-458 326-614 (1075)
34 KOG1059 Vesicle coat complex A 98.3 0.00053 1.2E-08 82.1 29.6 342 149-534 145-511 (877)
35 cd00020 ARM Armadillo/beta-cat 98.3 7.2E-06 1.6E-10 75.5 10.8 107 236-367 8-119 (120)
36 COG5064 SRP1 Karyopherin (impo 98.2 5.5E-05 1.2E-09 84.0 18.0 257 184-447 109-406 (526)
37 PF12348 CLASP_N: CLASP N term 98.1 8E-06 1.7E-10 85.6 9.0 182 196-404 14-204 (228)
38 cd00020 ARM Armadillo/beta-cat 98.1 1.1E-05 2.3E-10 74.4 8.3 105 300-404 5-118 (120)
39 KOG1241 Karyopherin (importin) 98.1 0.00024 5.1E-09 85.4 20.4 336 147-488 89-536 (859)
40 PF13513 HEAT_EZ: HEAT-like re 98.0 2.3E-05 4.9E-10 64.9 6.9 51 316-366 1-55 (55)
41 KOG1242 Protein containing ada 98.0 0.00024 5.2E-09 84.0 17.5 301 149-458 217-543 (569)
42 PF12717 Cnd1: non-SMC mitotic 97.9 0.0003 6.5E-09 72.2 15.3 98 161-270 1-99 (178)
43 KOG1242 Protein containing ada 97.9 0.00082 1.8E-08 79.7 20.3 267 135-443 83-359 (569)
44 KOG1240 Protein kinase contain 97.9 0.00024 5.2E-09 88.6 16.2 229 144-403 454-722 (1431)
45 PF13513 HEAT_EZ: HEAT-like re 97.8 4.3E-05 9.4E-10 63.3 6.5 55 249-329 1-55 (55)
46 KOG1061 Vesicle coat complex A 97.8 0.0011 2.4E-08 80.2 20.1 314 147-486 85-452 (734)
47 PF12348 CLASP_N: CLASP N term 97.8 0.00026 5.7E-09 74.2 13.4 187 240-451 12-215 (228)
48 KOG1060 Vesicle coat complex A 97.8 0.0013 2.8E-08 79.6 20.1 264 146-457 69-365 (968)
49 COG5096 Vesicle coat complex, 97.8 0.0013 2.8E-08 80.6 20.0 118 303-422 93-211 (757)
50 PF04826 Arm_2: Armadillo-like 97.8 0.0011 2.4E-08 72.2 17.6 188 144-368 9-205 (254)
51 KOG1241 Karyopherin (importin) 97.7 0.0021 4.6E-08 77.6 19.6 279 146-457 215-545 (859)
52 KOG1824 TATA-binding protein-i 97.7 0.0061 1.3E-07 75.1 23.0 264 200-484 830-1129(1233)
53 KOG4224 Armadillo repeat prote 97.7 0.00016 3.4E-09 81.1 9.1 206 150-390 87-305 (550)
54 KOG1062 Vesicle coat complex A 97.7 0.0026 5.6E-08 77.3 19.8 293 154-486 113-455 (866)
55 KOG1061 Vesicle coat complex A 97.6 0.0047 1E-07 75.0 20.4 229 150-424 15-249 (734)
56 COG5064 SRP1 Karyopherin (impo 97.5 0.001 2.3E-08 74.2 13.4 240 131-402 134-394 (526)
57 KOG1058 Vesicle coat complex C 97.5 0.0059 1.3E-07 73.8 19.5 334 153-518 104-469 (948)
58 KOG1824 TATA-binding protein-i 97.5 0.014 3.1E-07 72.1 23.0 128 131-264 594-722 (1233)
59 PF05918 API5: Apoptosis inhib 97.5 0.011 2.4E-07 70.8 21.3 215 234-486 22-253 (556)
60 KOG0213 Splicing factor 3b, su 97.4 0.0061 1.3E-07 73.5 18.4 251 144-431 712-975 (1172)
61 smart00638 LPD_N Lipoprotein N 97.4 0.0086 1.9E-07 71.8 20.2 245 129-437 313-573 (574)
62 COG5116 RPN2 26S proteasome re 97.4 0.0023 5.1E-08 75.1 14.0 212 187-441 444-683 (926)
63 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.00068 1.5E-08 63.7 8.0 88 164-256 2-89 (97)
64 COG5096 Vesicle coat complex, 97.3 0.026 5.7E-07 69.5 23.3 101 191-330 94-194 (757)
65 KOG2025 Chromosome condensatio 97.3 0.0095 2.1E-07 71.8 18.5 223 152-394 89-316 (892)
66 KOG0212 Uncharacterized conser 97.3 0.012 2.6E-07 69.5 19.0 328 152-489 47-409 (675)
67 KOG2062 26S proteasome regulat 97.3 0.0055 1.2E-07 73.9 16.4 210 149-405 414-652 (929)
68 KOG1060 Vesicle coat complex A 97.3 0.1 2.2E-06 63.9 26.2 354 124-486 117-614 (968)
69 KOG1943 Beta-tubulin folding c 97.2 0.0047 1E-07 77.0 15.3 213 148-367 341-610 (1133)
70 PF01347 Vitellogenin_N: Lipop 97.2 0.011 2.4E-07 71.2 17.8 246 145-438 360-618 (618)
71 COG5240 SEC21 Vesicle coat com 97.1 0.049 1.1E-06 64.6 21.3 274 148-441 264-554 (898)
72 KOG1062 Vesicle coat complex A 97.1 0.028 6E-07 68.7 19.7 228 149-395 143-403 (866)
73 KOG0212 Uncharacterized conser 97.1 0.14 3E-06 61.0 24.2 255 144-431 163-429 (675)
74 PF05918 API5: Apoptosis inhib 97.0 0.15 3.2E-06 61.4 24.7 254 189-488 23-299 (556)
75 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0038 8.3E-08 58.7 8.6 67 334-400 22-91 (97)
76 KOG2062 26S proteasome regulat 96.9 0.033 7.2E-07 67.6 17.8 266 161-457 392-668 (929)
77 KOG1059 Vesicle coat complex A 96.9 0.025 5.5E-07 68.4 16.8 241 157-421 118-378 (877)
78 KOG0414 Chromosome condensatio 96.9 0.0047 1E-07 77.6 11.1 130 243-405 933-1063(1251)
79 KOG2025 Chromosome condensatio 96.9 0.025 5.4E-07 68.4 16.4 170 185-403 81-256 (892)
80 COG5181 HSH155 U2 snRNP splice 96.9 0.015 3.3E-07 69.1 14.4 244 145-431 518-780 (975)
81 KOG0915 Uncharacterized conser 96.9 0.045 9.7E-07 70.7 19.4 277 145-447 815-1165(1702)
82 PF05804 KAP: Kinesin-associat 96.9 0.025 5.3E-07 69.8 16.9 258 149-442 251-517 (708)
83 PF01347 Vitellogenin_N: Lipop 96.9 0.047 1E-06 65.9 19.1 167 190-401 432-617 (618)
84 KOG1058 Vesicle coat complex C 96.8 0.063 1.4E-06 65.4 19.0 217 3-266 23-274 (948)
85 KOG0213 Splicing factor 3b, su 96.8 0.027 5.8E-07 68.3 15.8 314 80-440 797-1140(1172)
86 PF12460 MMS19_C: RNAPII trans 96.7 0.064 1.4E-06 62.2 18.3 199 148-368 189-394 (415)
87 smart00638 LPD_N Lipoprotein N 96.7 0.03 6.5E-07 67.2 15.5 107 145-263 390-508 (574)
88 COG5240 SEC21 Vesicle coat com 96.6 0.028 6E-07 66.6 13.8 247 144-406 296-555 (898)
89 COG5218 YCG1 Chromosome conden 96.5 0.021 4.6E-07 67.7 12.3 174 185-404 87-264 (885)
90 PF04826 Arm_2: Armadillo-like 96.4 0.082 1.8E-06 57.9 15.3 183 190-404 13-203 (254)
91 PF02985 HEAT: HEAT repeat; I 96.3 0.0054 1.2E-07 45.7 3.8 27 341-367 2-28 (31)
92 KOG1077 Vesicle coat complex A 96.3 0.68 1.5E-05 56.6 22.7 253 114-398 91-425 (938)
93 PF02985 HEAT: HEAT repeat; I 96.2 0.0057 1.2E-07 45.5 3.7 29 149-177 1-29 (31)
94 PF12719 Cnd3: Nuclear condens 96.2 0.73 1.6E-05 51.2 21.7 108 151-262 30-141 (298)
95 KOG1949 Uncharacterized conser 96.2 0.21 4.6E-06 60.6 18.1 187 192-407 177-371 (1005)
96 PF05004 IFRD: Interferon-rela 96.2 0.92 2E-05 51.1 22.4 195 152-367 47-256 (309)
97 COG5181 HSH155 U2 snRNP splice 96.1 0.15 3.3E-06 61.1 16.2 242 152-401 650-907 (975)
98 KOG4653 Uncharacterized conser 96.0 0.31 6.7E-06 60.5 18.9 202 147-394 726-940 (982)
99 KOG2032 Uncharacterized conser 96.0 0.37 8.1E-06 56.7 18.5 248 149-404 259-529 (533)
100 COG5218 YCG1 Chromosome conden 96.0 0.19 4.1E-06 60.1 16.0 201 152-367 95-299 (885)
101 KOG1078 Vesicle coat complex C 95.9 0.2 4.4E-06 61.5 16.7 243 146-405 243-531 (865)
102 KOG1943 Beta-tubulin folding c 95.9 0.3 6.4E-06 61.8 18.4 191 233-458 339-551 (1133)
103 KOG1020 Sister chromatid cohes 95.9 0.047 1E-06 70.4 11.7 114 145-269 813-926 (1692)
104 PF12719 Cnd3: Nuclear condens 95.9 0.073 1.6E-06 59.0 12.0 113 309-421 34-159 (298)
105 KOG1293 Proteins containing ar 95.8 0.58 1.2E-05 56.8 19.4 209 155-403 384-594 (678)
106 KOG4535 HEAT and armadillo rep 95.8 0.066 1.4E-06 62.5 11.4 91 316-406 498-603 (728)
107 KOG0414 Chromosome condensatio 95.8 0.1 2.2E-06 66.3 13.7 179 304-489 921-1105(1251)
108 COG5215 KAP95 Karyopherin (imp 95.8 1.7 3.6E-05 52.3 22.6 286 148-443 94-438 (858)
109 KOG1243 Protein kinase [Genera 95.7 0.025 5.3E-07 68.5 7.8 180 148-364 330-511 (690)
110 PF12460 MMS19_C: RNAPII trans 95.6 0.81 1.8E-05 53.2 19.7 205 114-346 189-409 (415)
111 smart00567 EZ_HEAT E-Z type HE 95.6 0.015 3.3E-07 42.7 3.6 30 316-351 1-30 (30)
112 KOG0915 Uncharacterized conser 95.5 1.6 3.4E-05 57.4 22.6 390 31-445 891-1347(1702)
113 KOG1949 Uncharacterized conser 95.4 1.1 2.3E-05 54.9 19.8 178 152-366 178-368 (1005)
114 KOG2213 Apoptosis inhibitor 5/ 95.4 4.2 9.1E-05 47.2 23.5 159 299-486 58-225 (460)
115 PF10363 DUF2435: Protein of u 95.4 0.091 2E-06 49.1 8.7 88 148-248 3-90 (92)
116 COG5116 RPN2 26S proteasome re 95.2 0.19 4.2E-06 59.7 12.6 129 191-368 518-650 (926)
117 KOG2032 Uncharacterized conser 95.2 1.1 2.3E-05 53.1 18.3 151 231-407 254-417 (533)
118 COG5215 KAP95 Karyopherin (imp 95.0 1.6 3.5E-05 52.4 19.2 194 146-368 219-437 (858)
119 PF03130 HEAT_PBS: PBS lyase H 95.0 0.024 5.1E-07 41.2 2.9 27 318-350 1-27 (27)
120 KOG0413 Uncharacterized conser 94.9 0.097 2.1E-06 65.1 9.5 205 246-489 942-1160(1529)
121 KOG0168 Putative ubiquitin fus 94.9 2.2 4.7E-05 53.4 20.5 344 301-677 210-601 (1051)
122 KOG1020 Sister chromatid cohes 94.6 0.37 7.9E-06 62.8 13.8 138 239-404 820-958 (1692)
123 KOG4535 HEAT and armadillo rep 94.3 0.47 1E-05 55.8 12.6 179 203-403 269-481 (728)
124 KOG1517 Guanine nucleotide bin 94.3 0.46 1E-05 60.0 13.2 216 165-411 487-737 (1387)
125 KOG1820 Microtubule-associated 93.9 1.3 2.9E-05 55.8 16.4 199 190-424 254-458 (815)
126 KOG1967 DNA repair/transcripti 93.8 0.4 8.6E-06 59.9 11.2 208 164-399 790-1017(1030)
127 PF05804 KAP: Kinesin-associat 93.3 5.5 0.00012 49.9 20.2 115 144-265 327-442 (708)
128 KOG2933 Uncharacterized conser 93.1 1.4 3E-05 49.6 13.1 181 191-404 90-275 (334)
129 KOG4413 26S proteasome regulat 93.0 6.3 0.00014 45.0 18.0 249 148-405 128-438 (524)
130 PF03130 HEAT_PBS: PBS lyase H 93.0 0.071 1.5E-06 38.8 2.1 27 355-388 1-27 (27)
131 PF11698 V-ATPase_H_C: V-ATPas 93.0 0.39 8.4E-06 47.2 7.8 92 124-216 19-113 (119)
132 smart00567 EZ_HEAT E-Z type HE 92.9 0.11 2.3E-06 38.2 3.0 30 353-389 1-30 (30)
133 KOG1525 Sister chromatid cohes 92.6 1.1 2.4E-05 58.6 13.3 207 185-427 255-474 (1266)
134 KOG1820 Microtubule-associated 92.5 1.8 4E-05 54.6 14.6 190 239-461 257-459 (815)
135 PF13001 Ecm29: Proteasome sta 92.3 6.5 0.00014 47.2 18.5 208 131-368 220-443 (501)
136 PF10363 DUF2435: Protein of u 91.8 0.66 1.4E-05 43.4 7.5 79 308-390 9-90 (92)
137 KOG1293 Proteins containing ar 91.7 1.7 3.7E-05 52.9 12.5 167 100-274 375-546 (678)
138 PF05004 IFRD: Interferon-rela 91.7 2.7 5.9E-05 47.4 13.6 156 145-329 83-255 (309)
139 KOG2956 CLIP-associating prote 91.5 2.4 5.1E-05 50.1 13.0 177 102-328 287-474 (516)
140 KOG4199 Uncharacterized conser 91.5 16 0.00034 42.1 18.9 292 119-451 82-412 (461)
141 KOG1078 Vesicle coat complex C 91.5 17 0.00037 45.6 20.5 193 236-459 246-438 (865)
142 KOG1248 Uncharacterized conser 91.2 17 0.00037 47.3 20.8 263 149-441 613-897 (1176)
143 COG5098 Chromosome condensatio 91.2 2.1 4.5E-05 52.5 12.4 100 305-404 302-413 (1128)
144 KOG1991 Nuclear transport rece 91.2 8.9 0.00019 48.9 18.2 290 156-518 367-703 (1010)
145 PF00514 Arm: Armadillo/beta-c 91.0 0.48 1E-05 37.1 4.8 28 340-367 13-40 (41)
146 PF00514 Arm: Armadillo/beta-c 90.9 0.26 5.7E-06 38.6 3.3 33 298-330 8-40 (41)
147 KOG1517 Guanine nucleotide bin 90.8 1.2 2.6E-05 56.6 10.3 98 161-266 570-674 (1387)
148 PF08713 DNA_alkylation: DNA a 90.4 7.5 0.00016 40.4 14.7 58 309-368 127-184 (213)
149 PF11865 DUF3385: Domain of un 90.3 2.1 4.7E-05 43.7 10.2 133 235-397 10-148 (160)
150 PF13251 DUF4042: Domain of un 89.7 3.2 7E-05 43.6 11.0 120 241-367 46-173 (182)
151 COG5098 Chromosome condensatio 89.0 0.85 1.8E-05 55.6 6.9 156 301-458 932-1095(1128)
152 PF08713 DNA_alkylation: DNA a 89.0 14 0.0003 38.4 15.3 93 339-439 120-212 (213)
153 KOG2160 Armadillo/beta-catenin 88.6 3.8 8.3E-05 46.9 11.4 149 151-330 127-281 (342)
154 KOG1991 Nuclear transport rece 88.3 75 0.0016 41.1 22.9 288 160-488 430-737 (1010)
155 PF12074 DUF3554: Domain of un 87.6 22 0.00048 40.1 16.9 84 165-262 4-88 (339)
156 KOG1967 DNA repair/transcripti 87.3 1.8 4E-05 54.4 8.4 110 148-261 909-1021(1030)
157 PF12530 DUF3730: Protein of u 87.2 46 0.00099 36.0 18.3 139 197-368 9-151 (234)
158 KOG4653 Uncharacterized conser 86.9 22 0.00048 45.0 17.1 187 190-408 728-920 (982)
159 PF12830 Nipped-B_C: Sister ch 86.8 2.5 5.5E-05 44.1 8.2 69 335-404 4-72 (187)
160 KOG0413 Uncharacterized conser 85.8 14 0.0003 47.3 14.6 236 152-405 419-684 (1529)
161 KOG1077 Vesicle coat complex A 84.8 32 0.0007 42.9 16.7 107 232-368 326-433 (938)
162 PF12830 Nipped-B_C: Sister ch 84.5 2.8 6E-05 43.8 7.1 65 150-218 10-74 (187)
163 PF14664 RICTOR_N: Rapamycin-i 84.0 77 0.0017 37.0 19.1 107 156-269 34-142 (371)
164 PF14500 MMS19_N: Dos2-interac 82.6 24 0.00052 39.1 13.7 207 151-368 2-237 (262)
165 KOG1525 Sister chromatid cohes 82.6 1.8E+02 0.0039 39.3 23.3 120 633-754 510-648 (1266)
166 KOG2274 Predicted importin 9 [ 82.2 63 0.0014 41.5 18.1 230 194-456 9-273 (1005)
167 PF14500 MMS19_N: Dos2-interac 81.5 4.6 0.0001 44.6 7.7 127 344-474 4-140 (262)
168 PF14664 RICTOR_N: Rapamycin-i 81.0 44 0.00095 38.9 15.7 90 300-389 106-200 (371)
169 KOG2011 Sister chromatid cohes 80.8 36 0.00077 44.4 15.8 207 146-403 198-432 (1048)
170 COG5537 IRR1 Cohesin [Cell div 80.6 82 0.0018 39.0 17.7 219 233-483 268-527 (740)
171 KOG2933 Uncharacterized conser 79.9 11 0.00025 42.7 10.0 122 303-426 89-217 (334)
172 KOG2956 CLIP-associating prote 79.4 53 0.0012 39.4 15.5 102 150-262 289-398 (516)
173 PF12765 Cohesin_HEAT: HEAT re 79.4 2 4.4E-05 34.5 3.0 28 145-172 15-42 (42)
174 PF11865 DUF3385: Domain of un 78.9 27 0.00059 35.8 11.8 41 326-366 115-155 (160)
175 KOG0946 ER-Golgi vesicle-tethe 78.5 35 0.00075 43.1 14.1 69 300-368 120-195 (970)
176 PF11935 DUF3453: Domain of un 78.2 27 0.00058 38.1 12.1 21 156-176 1-21 (239)
177 KOG1248 Uncharacterized conser 78.0 97 0.0021 40.9 18.3 269 109-404 603-896 (1176)
178 PF12530 DUF3730: Protein of u 77.8 73 0.0016 34.5 15.3 95 152-264 5-113 (234)
179 cd07064 AlkD_like_1 A new stru 76.7 44 0.00096 35.6 13.1 142 124-276 20-191 (208)
180 smart00185 ARM Armadillo/beta- 76.3 3.1 6.8E-05 31.5 3.2 29 301-329 11-39 (41)
181 cd07064 AlkD_like_1 A new stru 75.3 1.2E+02 0.0026 32.3 18.6 39 378-416 151-189 (208)
182 KOG1243 Protein kinase [Genera 74.6 23 0.00051 43.9 11.4 178 188-401 329-510 (690)
183 smart00185 ARM Armadillo/beta- 74.4 3.8 8.3E-05 31.0 3.3 28 340-367 13-40 (41)
184 cd03572 ENTH_epsin_related ENT 73.7 13 0.00027 36.9 7.4 47 325-371 24-70 (122)
185 KOG2973 Uncharacterized conser 72.4 16 0.00034 41.7 8.5 118 150-275 5-124 (353)
186 KOG2160 Armadillo/beta-catenin 71.9 20 0.00044 41.2 9.5 184 152-367 42-239 (342)
187 cd00256 VATPase_H VATPase_H, r 71.2 4.9 0.00011 47.5 4.6 92 123-216 328-423 (429)
188 KOG0392 SNF2 family DNA-depend 69.8 27 0.00059 46.0 10.7 29 302-330 208-236 (1549)
189 KOG0891 DNA-dependent protein 69.0 1.4E+02 0.0031 42.5 17.9 247 150-406 483-763 (2341)
190 KOG2005 26S proteasome regulat 68.9 1.3E+02 0.0029 37.7 15.6 270 146-442 413-743 (878)
191 PF07571 DUF1546: Protein of u 68.9 22 0.00049 33.2 7.6 57 312-368 16-78 (92)
192 KOG2149 Uncharacterized conser 68.8 25 0.00054 41.2 9.4 111 148-262 58-168 (393)
193 PF13251 DUF4042: Domain of un 68.6 25 0.00053 37.1 8.7 111 151-264 43-174 (182)
194 COG5369 Uncharacterized conser 68.3 10 0.00022 45.7 6.3 146 109-262 396-543 (743)
195 KOG4413 26S proteasome regulat 67.8 2.5E+02 0.0053 32.8 22.3 311 131-486 68-404 (524)
196 PF06685 DUF1186: Protein of u 67.5 44 0.00096 37.0 10.7 64 397-464 101-164 (249)
197 COG4335 DNA alkylation repair 66.9 29 0.00062 35.7 8.3 114 312-458 5-127 (167)
198 KOG2973 Uncharacterized conser 66.8 12 0.00026 42.5 6.2 94 306-403 7-108 (353)
199 PF08167 RIX1: rRNA processing 64.6 75 0.0016 32.6 11.1 37 234-270 24-61 (165)
200 PF13001 Ecm29: Proteasome sta 63.2 97 0.0021 37.4 13.4 220 31-262 243-486 (501)
201 KOG0392 SNF2 family DNA-depend 62.2 19 0.0004 47.4 7.3 109 149-264 817-925 (1549)
202 TIGR00540 hemY_coli hemY prote 62.0 3E+02 0.0066 31.9 23.3 255 124-458 65-328 (409)
203 PF12765 Cohesin_HEAT: HEAT re 61.7 8.4 0.00018 31.0 2.9 22 378-399 19-40 (42)
204 KOG0168 Putative ubiquitin fus 60.1 2.2E+02 0.0047 36.8 15.5 187 148-368 168-364 (1051)
205 KOG2213 Apoptosis inhibitor 5/ 59.8 34 0.00073 40.1 8.2 85 326-419 48-132 (460)
206 cd06561 AlkD_like A new struct 59.2 28 0.00061 35.7 7.1 73 192-274 108-180 (197)
207 KOG1932 TATA binding protein a 54.5 1.3E+02 0.0029 39.5 12.8 58 430-490 746-806 (1180)
208 PF12074 DUF3554: Domain of un 53.8 91 0.002 35.3 10.6 84 318-403 3-87 (339)
209 cd06561 AlkD_like A new struct 52.2 70 0.0015 32.8 8.6 66 342-409 108-173 (197)
210 PF11698 V-ATPase_H_C: V-ATPas 51.3 25 0.00053 34.9 4.7 65 303-367 44-114 (119)
211 KOG0946 ER-Golgi vesicle-tethe 50.7 6.8E+02 0.015 32.5 22.9 90 238-351 125-220 (970)
212 KOG2011 Sister chromatid cohes 49.5 60 0.0013 42.4 8.9 120 131-262 311-433 (1048)
213 cd03568 VHS_STAM VHS domain fa 48.4 3.1E+02 0.0067 27.8 12.4 88 310-401 12-105 (144)
214 cd03561 VHS VHS domain family; 48.4 77 0.0017 31.3 7.8 78 143-220 32-114 (133)
215 PF08506 Cse1: Cse1; InterPro 45.6 1.5E+02 0.0033 34.6 10.8 129 163-326 226-370 (370)
216 PF11935 DUF3453: Domain of un 45.2 1.8E+02 0.0039 31.7 10.8 139 310-458 1-161 (239)
217 KOG2005 26S proteasome regulat 45.2 2.2E+02 0.0047 36.0 12.0 64 303-368 641-704 (878)
218 PF03224 V-ATPase_H_N: V-ATPas 44.6 3.8E+02 0.0082 30.1 13.5 105 236-367 106-226 (312)
219 PF14663 RasGEF_N_2: Rapamycin 43.4 2.2E+02 0.0048 27.6 10.0 34 335-368 4-37 (115)
220 KOG3060 Uncharacterized conser 42.3 4.3E+02 0.0093 29.9 12.8 146 310-481 46-197 (289)
221 cd00197 VHS_ENTH_ANTH VHS, ENT 41.8 1.3E+02 0.0027 28.7 8.0 48 321-368 19-66 (115)
222 PF07539 DRIM: Down-regulated 41.6 47 0.001 33.6 5.2 49 145-200 14-62 (141)
223 KOG2759 Vacuolar H+-ATPase V1 40.6 31 0.00067 40.7 4.2 93 123-216 341-436 (442)
224 PF12397 U3snoRNP10: U3 small 38.8 2.2E+02 0.0047 27.4 9.1 48 337-386 4-52 (121)
225 cd03561 VHS VHS domain family; 38.4 3E+02 0.0066 27.1 10.3 88 310-401 12-107 (133)
226 cd03568 VHS_STAM VHS domain fa 38.4 1.7E+02 0.0036 29.7 8.5 78 143-220 32-112 (144)
227 PF06685 DUF1186: Protein of u 37.1 6.3E+02 0.014 28.2 19.4 125 302-458 111-241 (249)
228 PF10274 ParcG: Parkin co-regu 36.9 2.7E+02 0.0058 29.7 10.0 67 301-367 37-108 (183)
229 PF11791 Aconitase_B_N: Aconit 34.8 80 0.0017 32.7 5.6 98 150-262 24-121 (154)
230 PF07571 DUF1546: Protein of u 34.7 1.3E+02 0.0029 28.1 6.7 62 158-219 16-79 (92)
231 KOG3678 SARM protein (with ste 34.6 9.5E+02 0.021 29.5 14.8 135 234-368 179-336 (832)
232 COG1698 Uncharacterized protei 34.2 2.8E+02 0.006 26.5 8.4 73 333-441 11-89 (93)
233 KOG1048 Neural adherens juncti 34.2 6.3E+02 0.014 32.3 14.0 128 232-384 230-367 (717)
234 KOG4199 Uncharacterized conser 34.2 3.4E+02 0.0073 31.9 10.8 67 301-367 371-443 (461)
235 PF08506 Cse1: Cse1; InterPro 32.6 6E+02 0.013 29.8 13.0 137 201-363 223-370 (370)
236 PF11701 UNC45-central: Myosin 32.4 3.5E+02 0.0076 27.5 9.9 134 200-366 16-157 (157)
237 PF12726 SEN1_N: SEN1 N termin 31.1 1.4E+02 0.0031 37.7 8.2 115 186-330 438-552 (727)
238 COG5330 Uncharacterized protei 29.5 5.4E+02 0.012 30.3 11.6 82 304-394 9-93 (364)
239 cd08050 TAF6 TATA Binding Prot 29.1 4.2E+02 0.009 30.6 10.9 57 312-368 278-340 (343)
240 PF12688 TPR_5: Tetratrico pep 29.0 4.5E+02 0.0098 25.8 9.6 84 307-398 28-114 (120)
241 PF09450 DUF2019: Domain of un 29.0 89 0.0019 30.5 4.6 28 303-330 48-75 (106)
242 PF00613 PI3Ka: Phosphoinositi 28.7 4.3E+02 0.0093 27.8 10.0 81 300-389 43-123 (184)
243 PF14677 FANCI_S3: FANCI solen 28.5 1.7E+02 0.0036 31.9 7.1 136 633-774 76-218 (219)
244 PF10521 DUF2454: Protein of u 27.8 5E+02 0.011 28.9 10.9 125 189-330 119-252 (282)
245 PF11701 UNC45-central: Myosin 27.5 3.9E+02 0.0085 27.2 9.3 138 159-329 16-157 (157)
246 COG5537 IRR1 Cohesin [Cell div 26.7 5.8E+02 0.012 32.1 11.6 137 192-368 278-425 (740)
247 PF00790 VHS: VHS domain; Int 26.6 2.7E+02 0.0059 27.7 7.8 54 310-367 17-70 (140)
248 cd00872 PI3Ka_I Phosphoinositi 26.5 2.9E+02 0.0062 29.0 8.1 82 300-390 37-118 (171)
249 PF11838 ERAP1_C: ERAP1-like C 26.3 8.9E+02 0.019 26.5 20.2 123 317-455 130-260 (324)
250 COG5330 Uncharacterized protei 26.0 2.4E+02 0.0053 33.0 8.1 74 191-271 9-83 (364)
251 KOG1932 TATA binding protein a 26.0 1E+02 0.0022 40.5 5.6 43 304-348 676-720 (1180)
252 PF14868 DUF4487: Domain of un 25.6 1.5E+02 0.0033 36.5 6.8 71 191-264 481-552 (559)
253 KOG1048 Neural adherens juncti 25.1 3.7E+02 0.0079 34.3 9.9 144 340-486 276-452 (717)
254 KOG1992 Nuclear export recepto 24.9 1.7E+03 0.036 29.3 16.0 149 342-515 91-244 (960)
255 PF10521 DUF2454: Protein of u 24.7 7.4E+02 0.016 27.6 11.5 31 338-368 118-148 (282)
256 cd03572 ENTH_epsin_related ENT 24.7 2.4E+02 0.0053 28.1 6.9 34 147-180 37-70 (122)
257 PTZ00479 RAP Superfamily; Prov 24.6 1.3E+03 0.028 27.9 14.2 124 342-466 86-210 (435)
258 PF11707 Npa1: Ribosome 60S bi 24.5 1.1E+03 0.023 26.9 17.5 231 191-457 58-314 (330)
259 KOG4646 Uncharacterized conser 24.1 2.1E+02 0.0046 29.6 6.3 69 302-370 58-130 (173)
260 PF14668 RICTOR_V: Rapamycin-i 24.1 1.3E+02 0.0029 27.3 4.5 50 319-368 4-58 (73)
261 PF12054 DUF3535: Domain of un 23.8 1.3E+03 0.028 27.6 15.7 96 162-264 101-197 (441)
262 PF00613 PI3Ka: Phosphoinositi 23.6 1.6E+02 0.0035 31.0 5.8 105 339-452 45-149 (184)
263 smart00288 VHS Domain present 23.6 4.1E+02 0.009 26.3 8.4 77 144-220 33-113 (133)
264 PF08167 RIX1: rRNA processing 23.6 8.1E+02 0.017 25.1 11.7 123 307-457 30-158 (165)
265 PF14961 BROMI: Broad-minded p 23.6 2.4E+02 0.0052 37.8 8.1 79 313-426 173-252 (1296)
266 KOG0891 DNA-dependent protein 23.5 2.1E+03 0.045 31.9 17.3 178 194-404 486-675 (2341)
267 cd03567 VHS_GGA VHS domain fam 23.0 8E+02 0.017 24.8 11.3 88 310-401 13-111 (139)
268 PF12612 TFCD_C: Tubulin foldi 22.8 8.9E+02 0.019 25.3 12.8 79 408-488 100-188 (193)
269 PF09450 DUF2019: Domain of un 22.7 1.2E+02 0.0025 29.7 4.1 26 342-367 50-75 (106)
270 PF00790 VHS: VHS domain; Int 22.6 2.5E+02 0.0055 27.9 6.7 78 143-220 37-120 (140)
271 PRK04330 hypothetical protein; 22.6 6.2E+02 0.013 24.1 8.6 72 333-440 7-84 (88)
272 PF11707 Npa1: Ribosome 60S bi 22.6 1.2E+03 0.025 26.6 13.7 151 95-264 71-237 (330)
273 KOG0905 Phosphoinositide 3-kin 22.5 2.2E+02 0.0049 38.0 7.5 94 144-262 888-985 (1639)
274 KOG1822 Uncharacterized conser 22.5 2.7E+02 0.0058 39.0 8.4 121 134-262 120-246 (2067)
275 cd03569 VHS_Hrs_Vps27p VHS dom 22.2 4.8E+02 0.01 26.3 8.6 77 144-220 37-116 (142)
276 KOG1851 Uncharacterized conser 21.5 4.5E+02 0.0098 36.3 10.0 129 312-441 1537-1673(1710)
277 KOG3091 Nuclear pore complex, 20.9 3.5E+02 0.0075 32.9 8.2 87 595-706 344-430 (508)
278 PF03224 V-ATPase_H_N: V-ATPas 20.6 2.6E+02 0.0056 31.4 7.0 96 119-218 80-179 (312)
279 KOG1993 Nuclear transport rece 20.6 9.6E+02 0.021 31.3 12.1 84 430-518 632-719 (978)
280 cd00872 PI3Ka_I Phosphoinositi 20.6 9.7E+02 0.021 25.2 10.7 80 339-427 39-118 (171)
281 smart00288 VHS Domain present 20.1 7.2E+02 0.016 24.6 9.3 86 310-399 12-104 (133)
No 1
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-85 Score=744.91 Aligned_cols=726 Identities=26% Similarity=0.260 Sum_probs=591.4
Q ss_pred cccccchhhhhhhhhhhcCCCCChhhHHHHHHHHhhhcCCCCCCchhhHHHHHHhhcccccCCCCcchhhhhhhhccc--
Q 002304 15 VSKRHSLRALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRHPHFSPLISNSLRSNSL-- 92 (939)
Q Consensus 15 ~~~~~~~~~l~~~~~l~~~~~t~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~-- 92 (939)
-....|++...|++|+++|..|++.+.|+.+..++++++= .++ +-.||+++++++++++|-.+.+|+||+.-+..+
T Consensus 22 s~~~~s~~~t~s~ksaa~~a~~~~a~ss~~~~~ll~~l~r-~~s-~~~~~v~el~svl~~~r~l~e~q~fDs~~s~~~K~ 99 (823)
T KOG2259|consen 22 SPESISLDTTASIKSAAINADTSDAVSSSVFLFLLGLLSR-GNS-AILHHVLELLSVLAFRRMLLELQIFDSDESSRKKL 99 (823)
T ss_pred CccccccccccCchhhhhCCChhhccCHHHHHHHHHHHhc-cch-HHHHHHHHHHhhhhhHHHhhcchhccccchhhhHH
Confidence 3556899999999999999999999999999999999883 333 339999999999999999999999999886552
Q ss_pred ---------cccccch-hhHHHHhhh---ccCCchhHHHHHHHh---hcCCchHHHHHHhhhccc-c------CC-----
Q 002304 93 ---------LFSSYSP-RLAAAAALA---VISDHTVDDRFFVSL---CFASSVSVRLWLLRNAER-F------NV----- 144 (939)
Q Consensus 93 ---------~~~~~~~-~l~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~------~v----- 144 (939)
.++--|+ .+...+++- |++.++|..++-+-+ |.+++...+.|++.+..+ . |+
T Consensus 100 ~~l~~~l~~~~~~~s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~ 179 (823)
T KOG2259|consen 100 AILLGILEADFENGSTDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLY 179 (823)
T ss_pred HHHhhHhhhhhccCchhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHH
Confidence 1111110 222233332 888887766655555 555555689998887433 1 22
Q ss_pred ---------------ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHH
Q 002304 145 ---------------RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAA 209 (939)
Q Consensus 145 ---------------~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aA 209 (939)
..+.+..-+..+.+|.|++||+.|+++|..+++ |. ++...||..+++++.|+++.||.+|
T Consensus 180 ~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~----kL~~~~Y~~A~~~lsD~~e~VR~aA 254 (823)
T KOG2259|consen 180 CFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GF----KLSKACYSRAVKHLSDDYEDVRKAA 254 (823)
T ss_pred HHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cc----cccHHHHHHHHHHhcchHHHHHHHH
Confidence 223344457889999999999999999999998 65 5667799999999999999999999
Q ss_pred HHHHHHhcchhh-hhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhc
Q 002304 210 VRVVSEWGKMLI-ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFH 288 (939)
Q Consensus 210 V~aLg~lg~~~~-~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~ 288 (939)
+++++.||+..+ +...++++.++.|+||.++|++++|.+|.||++||++||.|+++|++++.|||+||+|+++|+||+.
T Consensus 255 vqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a 334 (823)
T KOG2259|consen 255 VQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA 334 (823)
T ss_pred HHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc
Confidence 999999999873 3445567788999999999999999999999999999999999999999999999999999999886
Q ss_pred cccch-------------------------hhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHH
Q 002304 289 SLGAA-------------------------ECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNL 343 (939)
Q Consensus 289 ~~l~~-------------------------d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~ 343 (939)
++..+ +..+++.+||||||||||||||+|||++|++++|+|+..+|.||.+++++
T Consensus 335 hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldf 414 (823)
T KOG2259|consen 335 HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDF 414 (823)
T ss_pred ccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 54211 12468889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhh
Q 002304 344 LVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENL 423 (939)
Q Consensus 344 LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L 423 (939)
|+||||||++.||++|+.+|.+|+. +++++|++++.+++.|+|.+++||.+++++|+..++++.+|+++++..|++||
T Consensus 415 LvDMfNDE~~~VRL~ai~aL~~Is~--~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L 492 (823)
T KOG2259|consen 415 LVDMFNDEIEVVRLKAIFALTMISV--HLAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNL 492 (823)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHH--HheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999999995 48999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCC-CCCCCCchhHHHHHHHHhhccccCcCCCCCCChhhhhh
Q 002304 424 KIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSD-DKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSY 502 (939)
Q Consensus 424 ~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~-~e~~~dd~~yiA~Lili~~A~~s~~~~~~~ip~~~fsh 502 (939)
.+||+||.+||+|+++||++|+.++..++.++++. +++|. .|++++|+.|+|+||+++||+.++|..+.++|...
T Consensus 493 ~kyPqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~k-h~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s~Pea~--- 568 (823)
T KOG2259|consen 493 GKYPQDRDEILRCMGRIGQNHRRLVLSNMGRFLEK-HTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVSRPEAH--- 568 (823)
T ss_pred hhCCCCcHHHHHHHHHHhccChhhHHHHHHHHHHh-cccccccCccccChhhhhhhhhhhhhhhhCCCeeeechHHH---
Confidence 99999999999999999999999999999999997 77776 99999999999999999999999998777777421
Q ss_pred hHhhhchhhhhhhhhhhhhhhhhhhccccCCCccccccCCCCCCcccccCCCCCCCcccccccccccccccchhhhccch
Q 002304 503 AVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQKSSDEASKSRS 582 (939)
Q Consensus 503 ~~~~~~k~y~~l~D~m~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (939)
.|||.|||+-+ +. ||+..++- ... ...++.. -++++
T Consensus 569 -----hrhla~Lr~ss-----pn-Lv~~~pi~-----~ld-~~~q~~r--------------------i~ssd------- 604 (823)
T KOG2259|consen 569 -----HRHLAILRCSS-----PN-LVGDGPIF-----FLD-ILCQFLR--------------------IKSSD------- 604 (823)
T ss_pred -----HHHHHHHhccC-----CC-CCCccchH-----HHH-HHHHHhh--------------------hhccc-------
Confidence 26778888733 44 44433322 000 0000000 01111
Q ss_pred hhhcchhhchhcchhhhhhHHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHhhhhcccC---cchHHHHHH
Q 002304 583 WIHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRG---FDGALLFSL 659 (939)
Q Consensus 583 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~il~~v~~~~~~~~~~~~~~~~~~L~~~~~eL~~l~~~~~~---~~g~~~f~~ 659 (939)
+..+...+-+...+.+.++..++ +...+....+..++.++.+.++.. .+||..|..
T Consensus 605 ----------------~~te~~ae~vfm~~yr~~~~~ta-----t~~~L~~g~~~~~~~k~~~~i~~~~~~~~gt~~~~~ 663 (823)
T KOG2259|consen 605 ----------------GETERQAEKVFMRMYREDDPRTA-----TIYYLYEGMVELRCKKKDDMIQRAPFLFAGTGFDAS 663 (823)
T ss_pred ----------------ccchhhHHHHHHHHHhhccchhh-----hhHHHhccchhHhhhhhhHHHHhhhhhhhhhHHHHH
Confidence 11223345566677777776654 455555555556666666666655 899988888
Q ss_pred HHHHHHHHHHHHHhhhccCCCccccccchHHHHHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHhhhhhhheehhhh
Q 002304 660 QYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYY 739 (939)
Q Consensus 660 ~Yl~~~~ll~k~~~~~~~~~~~~~~~~~~~~~~l~kL~~~~~~l~~~f~Gls~~e~~~V~el~L~a~al~L~~~~~~~~~ 739 (939)
.....+--...+.+..+ ...+-..++.++.|..+.+++|+|+|+|++.++.
T Consensus 664 ~l~~~~a~ve~iq~t~~-----~~~~~v~vkell~q~vs~c~~~ph~fsgl~~~~~------------------------ 714 (823)
T KOG2259|consen 664 VLCNPRAMVEYIQSTDF-----GSIRFVRVKELLPQRVSVCRRMPHRFSGLLLEED------------------------ 714 (823)
T ss_pred HHhchHHHHHHHhhhhh-----cceeeeeHHHHHHHHHHHHHhccCccCccccccc------------------------
Confidence 88877777766666554 2445578999999999999999999999765544
Q ss_pred hhhHhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhhccCCCCcCchhhhhhhccccccccccCccceeeEEEEecCCC
Q 002304 740 TTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINISHTSYRPSLFNQLLNSFSLSQLVFHGRLEHVHAELGVPDN 819 (939)
Q Consensus 740 ~~l~~~~~~i~~ve~~~~~~~~~p~~F~~~l~k~l~~~~~~g~~~~~~~~~~lLq~~~~~~~~~~~~i~~~~A~I~eP~~ 819 (939)
T Consensus 715 -------------------------------------------------------------------------------- 714 (823)
T KOG2259|consen 715 -------------------------------------------------------------------------------- 714 (823)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeeccCcceeeeeeEEEeccCCCceeEEEEEecCCceEEEecCCCCCCCCCceeEEEEEeecccCCCc-cceeee
Q 002304 820 SSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKA-SFTLRV 898 (939)
Q Consensus 820 dsdnp~~FtaGL~vaI~~datl~nv~~~~~lrlrv~ypD~~~Q~i~p~~~~~~g~~~~rl~T~V~~sh~~~ea-~~v~~i 898 (939)
+..|+|.+++.|+.-...+|.|+.--++-+|+..+.++|..+..+-|-+.+..--+.|+-| |++.+.
T Consensus 715 ------------~q~i~crv~l~~l~~~~~i~~r~~s~~dvCq~~~lt~~d~s~~i~~kpf~~~~d~~mt~~av~~~~~~ 782 (823)
T KOG2259|consen 715 ------------IQDIHCRVWLGDLPRDTPIHFRARSTVDVCQLDDLTSIDCSVVILLKPFMFCRDVQMTRTAVILIERK 782 (823)
T ss_pred ------------ceeeeEEEEecCCCchHHHHHHHhccccchhhccccchhhhhhhhcCCceeeeccccccceeeeeecc
Confidence 3345666666666666688888888899999999999998777777777777778889667 999999
Q ss_pred ehhhccccccccccccCCCccccccccccceeEEEEeccCC
Q 002304 899 CIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSRG 939 (939)
Q Consensus 899 ~l~le~~~~~i~~~~~~~gp~~~~v~Lck~~~V~~~~~~~~ 939 (939)
++..+|+++..+++++..||+.+++++||+-+..++.+|+|
T Consensus 783 s~~~~lligld~~rk~~~g~~~~~~l~~~~~~~pL~lpsa~ 823 (823)
T KOG2259|consen 783 SPKKDLLIGLDSYRKQRHGPKHPVALLCKEREIPLSLPSAT 823 (823)
T ss_pred cCccccCccccccccCCCCCcchhhhcccccCCCcCCCCCC
Confidence 99999999999999999999999999999999999999876
No 2
>PRK09687 putative lyase; Provisional
Probab=99.93 E-value=2.5e-24 Score=233.89 Aligned_cols=253 Identities=20% Similarity=0.163 Sum_probs=196.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNR 229 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~ 229 (939)
.+.+..++.|+|+.||..|+.+|+.+++..+ ++.+.++++|+++.||..|+.+||.+|..-
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~----------~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--------- 85 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGGQDV----------FRLAIELCSSKNPIERDIGADILSQLGMAK--------- 85 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcchH----------HHHHHHHHhCCCHHHHHHHHHHHHhcCCCc---------
Confidence 4667788899999999999999998886544 677888999999999999999999998621
Q ss_pred cccchhHHHHHHHh-hcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHh
Q 002304 230 IDCSDVVFIQLCSM-IRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFV 308 (939)
Q Consensus 230 i~lvddaf~aLc~a-L~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI 308 (939)
+....++..|..+ ++|+++.||..|+.+||.++.-.... ...+...+.
T Consensus 86 -~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------------------------------~~~a~~~l~ 134 (280)
T PRK09687 86 -RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY------------------------------SPKIVEQSQ 134 (280)
T ss_pred -cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------------------------------chHHHHHHH
Confidence 0014577788876 79999999999999999996422111 123455677
Q ss_pred hccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCC
Q 002304 309 HGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVD 388 (939)
Q Consensus 309 ~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D 388 (939)
..+.|+++.||.+|+.+||++++ .++++.|+.+++|+++.||..|+.+||+++.. .+.+++.|+.+|+|
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~~------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-----~~~~~~~L~~~L~D 203 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIND------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD-----NPDIREAFVAMLQD 203 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccCC------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHhcC
Confidence 88999999999999999999985 47999999999999999999999999998531 24688999999999
Q ss_pred CCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCCCC
Q 002304 389 NSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLG 468 (939)
Q Consensus 389 ~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~~ 468 (939)
++++||.+|..+||.++.+. ++..|++.|+. +..+..+..+|++||. |..+ |...++++.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~------av~~Li~~L~~-~~~~~~a~~ALg~ig~--~~a~-p~L~~l~~~---------- 263 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKR------VLSVLIKELKK-GTVGDLIIEAAGELGD--KTLL-PVLDTLLYK---------- 263 (280)
T ss_pred CChHHHHHHHHHHHccCChh------HHHHHHHHHcC-CchHHHHHHHHHhcCC--HhHH-HHHHHHHhh----------
Confidence 99999999999999988643 46777776664 4458888999999996 3443 334444442
Q ss_pred CCchhHHHHHHHHhh
Q 002304 469 FDNARVAAFLVLAIS 483 (939)
Q Consensus 469 ~dd~~yiA~Lili~~ 483 (939)
.+|+.++-.-+..++
T Consensus 264 ~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 264 FDDNEIITKAIDKLK 278 (280)
T ss_pred CCChhHHHHHHHHHh
Confidence 146666666655554
No 3
>PRK09687 putative lyase; Provisional
Probab=99.92 E-value=1.7e-23 Score=227.44 Aligned_cols=226 Identities=18% Similarity=0.119 Sum_probs=185.2
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHh-hCCCCchHHHHHHHHHHHhcchhhh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVEL-LRDHEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~l-L~Ddd~~VR~aAV~aLg~lg~~~~~ 222 (939)
++.+.++..+..+++|+|+.||+.|+.+|++++..... ....++.+..+ ++|+++.||..|+.+||.++...
T Consensus 50 ~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-- 122 (280)
T PRK09687 50 RGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKN-- 122 (280)
T ss_pred cCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc--
Confidence 56788999999999999999999999999999875420 12346777766 79999999999999999987521
Q ss_pred hcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhc
Q 002304 223 CIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASA 302 (939)
Q Consensus 223 ~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~ 302 (939)
..+...++..+..++.|++|.||..|+.+||++++ ..
T Consensus 123 -------~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------------------------------------~~ 159 (280)
T PRK09687 123 -------PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------------------------------------EA 159 (280)
T ss_pred -------cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------------------------------------HH
Confidence 11224577888899999999999999999999983 44
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHH
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMF 382 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~L 382 (939)
++++|+.+|+|++++||..|+.+||+++..+ ..+++.|+.+++|+++.||..|+.+||+++. +++++.|
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av~~L 228 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNKYDN----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVLSVL 228 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHHHHH
Confidence 6789999999999999999999999996433 3689999999999999999999999999984 5799999
Q ss_pred HHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCcc--chHHHHHHHH
Q 002304 383 LGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQ--DEADVFSVLF 438 (939)
Q Consensus 383 L~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~pe--Dr~~I~~aL~ 438 (939)
+..|+|++ +|..+..+||.++.+. ++..|+..++++++ .+..+.++|.
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~~~------a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGDKT------LLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCCHh------HHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 99999977 7888999999999853 56667776666662 2444444444
No 4
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.85 E-value=4.2e-20 Score=228.47 Aligned_cols=257 Identities=18% Similarity=0.082 Sum_probs=178.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNR 229 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~ 229 (939)
+..|.++++|+||.||++|+.+|++++.+.. .+.+.++|+|+++.||..|+++|+.++...
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~----------~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--------- 683 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGF----------GPALVAALGDGAAAVRRAAAEGLRELVEVL--------- 683 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHhcc---------
Confidence 4567789999999999999999999875543 577889999999999999999999986421
Q ss_pred cccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhh
Q 002304 230 IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVH 309 (939)
Q Consensus 230 i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~ 309 (939)
.....|..+|+|+++.||.+|+++|+.++.-....|.+.|..+ .-..|.. + -..+..-+..+++..
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~----d~~VR~~---A--v~aL~~~~~~~~l~~ 749 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDP----DHRVRIE---A--VRALVSVDDVESVAG 749 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCC----CHHHHHH---H--HHHHhcccCcHHHHH
Confidence 0123567788889999999999999888654444444443221 0000000 0 000111123456778
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCC
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDN 389 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~ 389 (939)
+|+|++++||.+|+.+||.++... ..+++.|..+++|+++.||..|+.+|++++.. +...+.++.+|+|+
T Consensus 750 ~l~D~~~~VR~~aa~aL~~~~~~~----~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~d~ 819 (897)
T PRK13800 750 AATDENREVRIAVAKGLATLGAGG----APAGDAVRALTGDPDPLVRAAALAALAELGCP------PDDVAAATAALRAS 819 (897)
T ss_pred HhcCCCHHHHHHHHHHHHHhcccc----chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chhHHHHHHHhcCC
Confidence 889999999999999998888532 23578888889999999999999999988742 22346788888999
Q ss_pred CHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhh-ccCccchHHHHHHHHHhhcccccchHHHHHHHhh
Q 002304 390 SELVRCAARKILKLVKTPKLEFFRLFIDGLLENL-KIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 390 ~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L-~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
++.||.+|..+|+.++.+. ++..|++.| ++.+.+|+.+.++|+.++ .+|.....+. ..++
T Consensus 820 d~~VR~~Aa~aL~~l~~~~------a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~~a~~~L~-~al~ 880 (897)
T PRK13800 820 AWQVRQGAARALAGAAADV------AVPALVEALTDPHLDVRKAAVLALTRWP-GDPAARDALT-TALT 880 (897)
T ss_pred ChHHHHHHHHHHHhccccc------hHHHHHHHhcCCCHHHHHHHHHHHhccC-CCHHHHHHHH-HHHh
Confidence 9999999999998876433 234444444 445566888888888872 1244544444 3343
No 5
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.84 E-value=1.2e-19 Score=224.55 Aligned_cols=288 Identities=20% Similarity=0.098 Sum_probs=202.8
Q ss_pred cccchhhHHHHhhhccCCchhHHHHHHHhhcCCchHHHHHHhhh-ccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHH
Q 002304 95 SSYSPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRN-AERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLV 173 (939)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~ 173 (939)
++-|+.+..+-.|. ..-.+.|. ..+-.....+|..-... ++ .+++..++.|...++|+|+.||.+|+.+|+
T Consensus 606 ~~~~~~~~~~~~l~----~~~~~~L~-~~L~D~d~~VR~~Av~~L~~---~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~ 677 (897)
T PRK13800 606 EPPSPRILAVLALD----APSVAELA-PYLADPDPGVRRTAVAVLTE---TTPPGFGPALVAALGDGAAAVRRAAAEGLR 677 (897)
T ss_pred CCchHHHHHHHhcc----chhHHHHH-HHhcCCCHHHHHHHHHHHhh---hcchhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44455555555442 11222332 23345666666665555 44 456778889999999999999999999999
Q ss_pred hhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHH
Q 002304 174 CLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRV 253 (939)
Q Consensus 174 ~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~ 253 (939)
++.+... ..+.+..+|+|+++.||..|+++|+.++.. + ...+..+|.|+++.||.
T Consensus 678 ~l~~~~~---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~---------------~-~~~l~~~L~D~d~~VR~ 732 (897)
T PRK13800 678 ELVEVLP---------PAPALRDHLGSPDPVVRAAALDVLRALRAG---------------D-AALFAAALGDPDHRVRI 732 (897)
T ss_pred HHHhccC---------chHHHHHHhcCCCHHHHHHHHHHHHhhccC---------------C-HHHHHHHhcCCCHHHHH
Confidence 9864321 024577889999999999999999987631 0 23567899999999999
Q ss_pred HHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhh--hhcchHHHhhccCCCcHHHHHHHHHHHHhccc
Q 002304 254 EAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEIS--ASAAAGTFVHGFEDEFYEVRKSACSSLGSLVI 331 (939)
Q Consensus 254 ~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~--~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~ 331 (939)
+|+++||+++.. +.|+..+.+. ....|... ......+. ...+.+++...+.|++++||.+|+.+||+++.
T Consensus 733 ~Av~aL~~~~~~--~~l~~~l~D~----~~~VR~~a--a~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 733 EAVRALVSVDDV--ESVAGAATDE----NREVRIAV--AKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGC 804 (897)
T ss_pred HHHHHHhcccCc--HHHHHHhcCC----CHHHHHHH--HHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 999999998653 3343333221 11111100 00000111 12346789999999999999999999999996
Q ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhH
Q 002304 332 LSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEF 411 (939)
Q Consensus 332 ~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~ 411 (939)
. ..+.+.|+.+++|++|.||..|+++|++++. ++.++.|+.+|+|+++.||++|..+|+.+..+. .
T Consensus 805 ~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~--~ 870 (897)
T PRK13800 805 P-----PDDVAAATAALRASAWQVRQGAARALAGAAA-------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDP--A 870 (897)
T ss_pred c-----chhHHHHHHHhcCCChHHHHHHHHHHHhccc-------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH--H
Confidence 3 2345779999999999999999999999984 468899999999999999999999999974321 1
Q ss_pred HHHHHHHHHHhhccCccchHHHHHHHHH
Q 002304 412 FRLFIDGLLENLKIYPQDEADVFSVLFF 439 (939)
Q Consensus 412 l~~~l~~LL~~L~~~peDr~~I~~aL~~ 439 (939)
....+..+++ +.++++|+.+.++|..
T Consensus 871 a~~~L~~al~--D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALT--DSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhh
Confidence 2224445555 5566678888888763
No 6
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.69 E-value=3.2e-15 Score=164.53 Aligned_cols=243 Identities=27% Similarity=0.247 Sum_probs=156.2
Q ss_pred HhhcCCchHHHHHHhhhccccCCChh-hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCC
Q 002304 122 SLCFASSVSVRLWLLRNAERFNVRPH-LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRD 200 (939)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~D 200 (939)
..+++.....+++.+.+-+.+..... .....+.+++.|+++.||..|+..|+.++.... .+.+.++|.|
T Consensus 16 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~a----------v~~l~~~l~d 85 (335)
T COG1413 16 LLSYGSEAAAALQALAELDDLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSEEA----------VPLLRELLSD 85 (335)
T ss_pred ccccchhhhHHHHHHhccchhhcccchhhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHH----------HHHHHHHhcC
Confidence 34666666667777777665555554 678889999999999999999999998876544 6889999999
Q ss_pred CCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhc-CCCHHHHHHHHHHHhcccCCc-HHHHHHHhhHHH
Q 002304 201 HEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIR-DMRMEVRVEAFNALGKVGMIS-EIVLLQTLSKKV 278 (939)
Q Consensus 201 dd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~-D~s~~VR~~AA~ALG~i~~vs-~~~LlqtL~kkl 278 (939)
.++.||..|+.+||.++. ..+...+...+. |+++.||..|+.+||++++.. -..|...+.+..
T Consensus 86 ~~~~vr~~a~~aLg~~~~---------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~ 150 (335)
T COG1413 86 EDPRVRDAAADALGELGD---------------PEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDED 150 (335)
T ss_pred CCHHHHHHHHHHHHccCC---------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccch
Confidence 999999999999999996 456778888887 899999999999999998732 333333332221
Q ss_pred hhh--------hhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcC
Q 002304 279 LGA--------TKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350 (939)
Q Consensus 279 m~~--------lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnD 350 (939)
... ....| .........+.+..+.+.++.+++|++..||.+|+.+||+++..+ ..+.+.+..++.|
T Consensus 151 ~~~a~~~~~~~~~~~r--~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~ 224 (335)
T COG1413 151 SGSAAAALDAALLDVR--AAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSD 224 (335)
T ss_pred hhhhhhhccchHHHHH--HHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcC
Confidence 000 00000 000000112334455555555566655556666666665555421 1344555555666
Q ss_pred CCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHh
Q 002304 351 DSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILK 402 (939)
Q Consensus 351 e~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg 402 (939)
+++.||.+++.+||.++. +++++.+...+.+.++.+|..+..+++
T Consensus 225 ~~~~vr~~~~~~l~~~~~-------~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 225 ESLEVRKAALLALGEIGD-------EEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred CCHHHHHHHHHHhcccCc-------chhHHHHHHHHhccchHHHHHHHHHhc
Confidence 666666666666665552 345555555666666655555555554
No 7
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.69 E-value=2.3e-15 Score=171.76 Aligned_cols=227 Identities=15% Similarity=0.056 Sum_probs=174.9
Q ss_pred hhHHHHHHhhh-cCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 147 HLLFTVCLGLT-KDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 147 ~~L~~~L~~ll-~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
+..+..+...+ .|+++.||.+|+.+|....+.. .+..++++|.|.++.||.+|+++||.++.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~----------~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQEDAL----------DLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChH----------HHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 34566666666 6888889888888886443322 15678888888888899999999988776
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchH
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAG 305 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~g 305 (939)
..+...|..+++|.++.||..+..++|..+. ...+
T Consensus 116 --------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-------------------------------------~~~~ 150 (410)
T TIGR02270 116 --------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-------------------------------------DPGP 150 (410)
T ss_pred --------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-------------------------------------ChHH
Confidence 4577788888899999999888888887542 1234
Q ss_pred HHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHh
Q 002304 306 TFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGT 385 (939)
Q Consensus 306 aLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~ 385 (939)
+++.+|+|+++.||.+|+.+||+++. ..+++.|..++.|+++.||..|+.+|+.+|. +++++.++..
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------~~A~~~l~~~ 217 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPR------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------RLAWGVCRRF 217 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHH
Confidence 67778889999999999999999986 3588889999999999999999999999984 4678888888
Q ss_pred cCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhh
Q 002304 386 LVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 386 L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
..+....++.++..+++..+.+. ++..|...+++ +..|..+..+++++|. |..+..++..+-+
T Consensus 218 ~~~~g~~~~~~l~~~lal~~~~~------a~~~L~~ll~d-~~vr~~a~~AlG~lg~--p~av~~L~~~l~d 280 (410)
T TIGR02270 218 QVLEGGPHRQRLLVLLAVAGGPD------AQAWLRELLQA-AATRREALRAVGLVGD--VEAAPWCLEAMRE 280 (410)
T ss_pred HhccCccHHHHHHHHHHhCCchh------HHHHHHHHhcC-hhhHHHHHHHHHHcCC--cchHHHHHHHhcC
Confidence 88888888888888888876542 34555554333 5578888899999886 6777666665543
No 8
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.67 E-value=3.6e-15 Score=170.15 Aligned_cols=209 Identities=16% Similarity=-0.012 Sum_probs=179.8
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
..+..+.+.+.|+++.||.+|+++|+.+..... .+.++.+|+|+++.||..++.+++..+.
T Consensus 86 ~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a----------~~~L~~~L~~~~p~vR~aal~al~~r~~--------- 146 (410)
T TIGR02270 86 LDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQA----------EPWLEPLLAASEPPGRAIGLAALGAHRH--------- 146 (410)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHH----------HHHHHHHhcCCChHHHHHHHHHHHhhcc---------
Confidence 347889999999999999999999999987764 4778999999999999999999998553
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHH
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTF 307 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaL 307 (939)
+....+..+|+|+++.||.+|+.+||+++. ..+++.|
T Consensus 147 -------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------------------------------------~~a~~~L 183 (410)
T TIGR02270 147 -------DPGPALEAALTHEDALVRAAALRALGELPR------------------------------------RLSESTL 183 (410)
T ss_pred -------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------------------------------------ccchHHH
Confidence 356788999999999999999999999984 3456678
Q ss_pred hhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcC
Q 002304 308 VHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLV 387 (939)
Q Consensus 308 I~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~ 387 (939)
+.++.|++.+||.+|+.+|+.+|. ..+++.|.....+....++..++.+++.++. +++++.|..+++
T Consensus 184 ~~al~d~~~~VR~aA~~al~~lG~------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-------~~a~~~L~~ll~ 250 (410)
T TIGR02270 184 RLYLRDSDPEVRFAALEAGLLAGS------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-------PDAQAWLRELLQ 250 (410)
T ss_pred HHHHcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-------hhHHHHHHHHhc
Confidence 888999999999999999999996 4688999998889888888888888877663 469999999999
Q ss_pred CCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHh
Q 002304 388 DNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFI 440 (939)
Q Consensus 388 D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~L 440 (939)
|++ ||.++..++|.++.+. ++..|+..+++.+ .++.+-+++.+|
T Consensus 251 d~~--vr~~a~~AlG~lg~p~------av~~L~~~l~d~~-~aR~A~eA~~~I 294 (410)
T TIGR02270 251 AAA--TRREALRAVGLVGDVE------AAPWCLEAMREPP-WARLAGEAFSLI 294 (410)
T ss_pred Chh--hHHHHHHHHHHcCCcc------hHHHHHHHhcCcH-HHHHHHHHHHHh
Confidence 976 9999999999999876 4667777666544 688888999998
No 9
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.63 E-value=1.6e-14 Score=158.88 Aligned_cols=248 Identities=26% Similarity=0.276 Sum_probs=187.0
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhC-CCCchHHHHHHHHHHHhcchhhh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLR-DHEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~-Ddd~~VR~aAV~aLg~lg~~~~~ 222 (939)
++....+..+..++.|.++.||..|+.+|++++++.. ++.++.+|. |++..||..|+.+||.+++.
T Consensus 70 ~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a----------~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--- 136 (335)
T COG1413 70 LGSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEA----------VPPLVELLENDENEGVRAAAARALGKLGDE--- 136 (335)
T ss_pred hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhH----------HHHHHHHHHcCCcHhHHHHHHHHHHhcCch---
Confidence 6778999999999999999999999999999987654 577888887 89999999999999999972
Q ss_pred hcccccccccchhHHHHHHHhhcCCC------------HHHHHHHHHHHhcccCC-cHHHHHHHhhHHHhhhhhhhhhcc
Q 002304 223 CIDEKNRIDCSDVVFIQLCSMIRDMR------------MEVRVEAFNALGKVGMI-SEIVLLQTLSKKVLGATKEKKFHS 289 (939)
Q Consensus 223 ~~~~~~~i~lvddaf~aLc~aL~D~s------------~~VR~~AA~ALG~i~~v-s~~~LlqtL~kklm~~lk~kr~~~ 289 (939)
.++.++...++|.. +.||.+|+.+||+++.. ....+.+.+.... +..|...
T Consensus 137 ------------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~----~~vr~~A 200 (335)
T COG1413 137 ------------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDED----ADVRRAA 200 (335)
T ss_pred ------------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCch----HHHHHHH
Confidence 34566667777655 68999999999999873 3444444433221 1111100
Q ss_pred ccchhhhhhhhh--cchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 290 LGAAECFEISAS--AAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 290 ~l~~d~~~l~~s--~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
......+... .+..-|...++|+.+.||.+++.+||.++. .++++.+...+.|+++.+|..+..+++...
T Consensus 201 --a~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 272 (335)
T COG1413 201 --ASALGQLGSENVEAADLLVKALSDESLEVRKAALLALGEIGD------EEAVDALAKALEDEDVILALLAAAALGALD 272 (335)
T ss_pred --HHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHHHHhcccCc------chhHHHHHHHHhccchHHHHHHHHHhcccC
Confidence 0000111122 466789999999999999999999999997 479999999999999999999999999655
Q ss_pred hcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccC-ccchHHHHHHHHHhh
Q 002304 368 TCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIY-PQDEADVFSVLFFIG 441 (939)
Q Consensus 368 ~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~-peDr~~I~~aL~~LG 441 (939)
. ......+...+.|.+..+|..+..+++..+.... ...++...+.- +..++..+..+..++
T Consensus 273 ~-------~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~ 334 (335)
T COG1413 273 L-------AEAALPLLLLLIDEANAVRLEAALALGQIGQEKA------VAALLLALEDGDADVRKAALILLEGID 334 (335)
T ss_pred c-------hhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch------HHHHHHHhcCCchhhHHHHHHHHHhhc
Confidence 3 2367788999999999999999999999886543 33333333332 344666666665544
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.41 E-value=2.6e-11 Score=140.52 Aligned_cols=313 Identities=17% Similarity=0.182 Sum_probs=183.8
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhh-HHHHHHHhhCCCCchHHHHHHHHHHHh-cchhhhhcc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQG-CCCRAVELLRDHEDCVRCAAVRVVSEW-GKMLIACID 225 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~-i~~~l~~lL~Ddd~~VR~aAV~aLg~l-g~~~~~~~~ 225 (939)
.+...+...+.|++|.||+.|+.++.++..... ..+.. +.+.+.++|.|.++.|+.+|+.++..+ .. +
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p----~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~------~ 183 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP----DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCN------D 183 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH----CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCT------H
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH----HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccC------c
Confidence 345566778888888888888888888876432 22233 567788888888888888888888887 11 0
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHH-----HHHHhhHHHhhhhhhhhh-----ccccchhh
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIV-----LLQTLSKKVLGATKEKKF-----HSLGAAEC 295 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~-----LlqtL~kklm~~lk~kr~-----~~~l~~d~ 295 (939)
+....+....+..|++.+.++++-++..+.+.|+.+....... +.+.+...+.+....... ...+...
T Consensus 184 -~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~- 261 (526)
T PF01602_consen 184 -DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS- 261 (526)
T ss_dssp -HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-
T ss_pred -chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-
Confidence 0001445667778888888888888888888888886543222 222221111110000000 0000000
Q ss_pred hhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhhhhcccccc
Q 002304 296 FEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDML-NDDSVTVRLQALETMHIMVTCEHLNL 374 (939)
Q Consensus 296 ~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmL-nDe~~~VRl~Aa~ALgkI~~~~~i~l 374 (939)
..+-..+++.++..|.+.+..||..|.++|.++....+.... .....+..+ .|++..||..|++.|.++++..++
T Consensus 262 -~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~-- 337 (526)
T PF01602_consen 262 -PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV-- 337 (526)
T ss_dssp -HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH--
T ss_pred -hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccch--
Confidence 001244667777777777777777777777777765533222 222223333 377777777777777777753222
Q ss_pred hhhHHHHHHHhcCCC-CHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccC-ccchHHHHHHHHHhhcccccchHHHH
Q 002304 375 EDKHMHMFLGTLVDN-SELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIY-PQDEADVFSVLFFIGRSHGNFAACII 452 (939)
Q Consensus 375 ~E~aL~~LL~~L~D~-~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~-peDr~~I~~aL~~LG~~H~~lv~~lv 452 (939)
++.++.|...+.+. ++++|+.+...++.+........+..++.+++.+..- ......+|..+.++-.++|+..+.++
T Consensus 338 -~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l 416 (526)
T PF01602_consen 338 -KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKIL 416 (526)
T ss_dssp -HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHH
T ss_pred -hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHH
Confidence 34667777777444 6777777777777665433444445566666655532 23366677777777666667766677
Q ss_pred HHHhhhcCCCCCCCCCCCchhHHHHHHHHhhc
Q 002304 453 KEVCQEIEPDSDDKLGFDNARVAAFLVLAISV 484 (939)
Q Consensus 453 ~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A 484 (939)
..+.+.++- .+++.+.+..+-+++.
T Consensus 417 ~~L~~~l~~-------~~~~~~~~~~~wilGE 441 (526)
T PF01602_consen 417 KKLIELLED-------ISSPEALAAAIWILGE 441 (526)
T ss_dssp HHHHHHHTS-------SSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------hhHHHHHHHHHhhhcc
Confidence 777665322 3344444444444444
No 11
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.40 E-value=1.8e-12 Score=156.47 Aligned_cols=256 Identities=18% Similarity=0.168 Sum_probs=201.1
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
+.++...+..+++|.+|+||++++..++.+...-. ......+..+.+.++++|++++||.+|++.+..+++.+....
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~--~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~- 311 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE--SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD- 311 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH--HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-
Confidence 45677888999999999999999999999876422 224455677889999999999999999999999887542111
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
....+....+.++.+|++|+||++.++.+-++.. ++++. ......
T Consensus 312 -----d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-----------------------------~~~~~~ 357 (759)
T KOG0211|consen 312 -----DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-----------------------------TRTQLV 357 (759)
T ss_pred -----hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-----------------------------Ccccch
Confidence 3345677889999999999999999999888732 22211 023456
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhcccc-c----hhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cccccchhh
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVIL-S----EKFA-GEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEHLNLEDK 377 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~-s----~~fA-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~i~l~E~ 377 (939)
+++...++|++|+||.+++....++... + +.++ ..+++.+.....|.+++||...+...+.+.+ .+.-...+.
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~ 437 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISE 437 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccc
Confidence 7899999999999999999998877642 1 2333 4557999999999999999999999988865 334445567
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH-HhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHh
Q 002304 378 HMHMFLGTLVDNSELVRCAARKI-LKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFI 440 (939)
Q Consensus 378 aL~~LL~~L~D~~~dVR~aA~~a-Lg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~L 440 (939)
.+|.+++.|+|++++||...... ....+++++.+.....+++|+++....+|+. ||+-..|
T Consensus 438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~--wRvr~ai 499 (759)
T KOG0211|consen 438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLL--WRVRLAI 499 (759)
T ss_pred cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchh--HHHHHHH
Confidence 89999999999999999888753 3445788999999999999999999999963 4444333
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.34 E-value=2.6e-10 Score=132.22 Aligned_cols=326 Identities=17% Similarity=0.137 Sum_probs=224.3
Q ss_pred hhhHHHHhhhccCCc--hhHHHHHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhh
Q 002304 99 PRLAAAAALAVISDH--TVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLL 176 (939)
Q Consensus 99 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~ 176 (939)
.+.....++...+++ +.--|+|.+.++..+.. -+.+ ....+.+-++|++|.+|..|+++|+.++
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-~~~l-------------~~n~l~kdl~~~n~~~~~lAL~~l~~i~ 107 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-LLIL-------------IINSLQKDLNSPNPYIRGLALRTLSNIR 107 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH-HHHH-------------HHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh-HHHH-------------HHHHHHHhhcCCCHHHHHHHHhhhhhhc
Confidence 344455555555555 44556666666655544 1111 2244556788999999999999999998
Q ss_pred hcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchh-HHHHHHHhhcCCCHHHHHHH
Q 002304 177 KHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDV-VFIQLCSMIRDMRMEVRVEA 255 (939)
Q Consensus 177 ~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvdd-af~aLc~aL~D~s~~VR~~A 255 (939)
.+. +.+.+.+.+.+++.|+++.||..|+-++..+-... ...+.+ .+..|..++.|.++.|+.+|
T Consensus 108 ~~~------~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~---------p~~~~~~~~~~l~~lL~d~~~~V~~~a 172 (526)
T PF01602_consen 108 TPE------MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD---------PDLVEDELIPKLKQLLSDKDPSVVSAA 172 (526)
T ss_dssp SHH------HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---------HCCHHGGHHHHHHHHTTHSSHHHHHHH
T ss_pred ccc------hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC---------HHHHHHHHHHHHhhhccCCcchhHHHH
Confidence 654 34567899999999999999999999999887532 123334 58899999999999999999
Q ss_pred HHHHhcc-cCCcHH-HHHHHhhHHHhhhhhhh---------hhccccchhhhhhhh--hcchHHHhhccCCCcHHHHHHH
Q 002304 256 FNALGKV-GMISEI-VLLQTLSKKVLGATKEK---------KFHSLGAAECFEISA--SAAAGTFVHGFEDEFYEVRKSA 322 (939)
Q Consensus 256 A~ALG~i-~~vs~~-~LlqtL~kklm~~lk~k---------r~~~~l~~d~~~l~~--s~a~gaLI~~LeDE~~eVR~aA 322 (939)
..++.++ .+.... .+...+.+.+..-+... +............ . ...++.+...|.+.++.|+.+|
T Consensus 173 ~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 173 LSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED-ADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp HHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh-hhHHHHHHHHHHHhhccccHHHHHH
Confidence 9999999 321110 11222222222111000 0001111100111 1 3467788888889999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcC-CCCHHHHHHHHHHH
Q 002304 323 CSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLV-DNSELVRCAARKIL 401 (939)
Q Consensus 323 aeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~-D~~~dVR~aA~~aL 401 (939)
+..+..+.. ++.+...+++.|..++++.++.||..++++|..|.....-.+. .....+..+. |++..||..+-.+|
T Consensus 252 ~~~i~~l~~-~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 252 IRLIIKLSP-SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp HHHHHHHSS-SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred HHHHHHhhc-chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHH
Confidence 999999886 4446688999999999999999999999999999864322333 2233334444 99999999999988
Q ss_pred hhccCCchhHHHHHHHHHHHhhccC--ccchHHHHHHHHHhhcccccchHHHHHHHhhhc
Q 002304 402 KLVKTPKLEFFRLFIDGLLENLKIY--PQDEADVFSVLFFIGRSHGNFAACIIKEVCQEI 459 (939)
Q Consensus 402 g~i~l~~~~~l~~~l~~LL~~L~~~--peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i 459 (939)
..+. +..-++.+++.|++-+.+. ++-+..+..+++.++.+++...+..++.+++.+
T Consensus 329 ~~l~--~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll 386 (526)
T PF01602_consen 329 YKLA--NESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL 386 (526)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH
T ss_pred hhcc--cccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh
Confidence 8865 4556677899999988433 334888999999999888877777777776653
No 13
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=2.8e-11 Score=140.56 Aligned_cols=273 Identities=18% Similarity=0.128 Sum_probs=195.6
Q ss_pred CHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHH
Q 002304 161 YPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQL 240 (939)
Q Consensus 161 Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aL 240 (939)
...+|..+....+.++-..... .+-.+..+..++.+..|.|..||..|+++|=.+++. ..+....+...
T Consensus 171 s~~~~~~~~~~~~~lg~~~ss~-~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg----------~kL~~~~Y~~A 239 (823)
T KOG2259|consen 171 STGNRLLLYCFHLPLGVSPSSL-THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG----------FKLSKACYSRA 239 (823)
T ss_pred cccchHHHHHHhhhcccCCCcc-cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc----------ccccHHHHHHH
Confidence 3467777777777665432211 111223455578888999999999999998888763 23445567889
Q ss_pred HHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHH
Q 002304 241 CSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRK 320 (939)
Q Consensus 241 c~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~ 320 (939)
|..+.|.+..||.+|.+++--.++.-+-.+ .+...+++ +-..|...+-+++.|-.|.||.
T Consensus 240 ~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~--------e~e~~e~k------------l~D~aF~~vC~~v~D~sl~VRV 299 (823)
T KOG2259|consen 240 VKHLSDDYEDVRKAAVQLVSVWGNRCPAPL--------ERESEEEK------------LKDAAFSSVCRAVRDRSLSVRV 299 (823)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhcCCCcc--------cchhhhhh------------hHHHHHHHHHHHHhcCceeeee
Confidence 999999999999999887755544211000 00000000 1233455677899999999999
Q ss_pred HHHHHHHhccccchhhHHHHH-------------------------------------------------------HHHH
Q 002304 321 SACSSLGSLVILSEKFAGEAL-------------------------------------------------------NLLV 345 (939)
Q Consensus 321 aAaeALGkL~~~s~~fA~~AL-------------------------------------------------------d~Lv 345 (939)
.|+++||.+.+.+.+|..+.+ ..++
T Consensus 300 ~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~V 379 (823)
T KOG2259|consen 300 EAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALV 379 (823)
T ss_pred hHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceee
Confidence 999999999987777653332 3467
Q ss_pred HHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 002304 346 DMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKI 425 (939)
Q Consensus 346 dmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~ 425 (939)
.-|+||-.+||.+|+.++++++. ....+.+++++.|..+++|+..+||-.+..+|..|...- ..=+.-++..++.|++
T Consensus 380 hGlEDEf~EVR~AAV~Sl~~La~-ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-~i~eeql~~il~~L~D 457 (823)
T KOG2259|consen 380 HGLEDEFYEVRRAAVASLCSLAT-SSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-AIREEQLRQILESLED 457 (823)
T ss_pred eechHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-eecHHHHHHHHHHHHh
Confidence 77899999999999999999995 345677889999999999999999999988887765331 1112346677777777
Q ss_pred Cccc-hHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCC
Q 002304 426 YPQD-EADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDK 466 (939)
Q Consensus 426 ~peD-r~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e 466 (939)
+..| |..+...|+...-..-+.+.-++.+|++..+.|-.++
T Consensus 458 ~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDr 499 (823)
T KOG2259|consen 458 RSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDR 499 (823)
T ss_pred cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCc
Confidence 7654 7777777777765556788889999999888876655
No 14
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3.2e-09 Score=123.23 Aligned_cols=317 Identities=18% Similarity=0.147 Sum_probs=222.0
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHhhhhcccc--cchhhhhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 151 TVCLGLTKDPYPYVREAALNGLVCLLKHVVF--EDVDLIQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 151 ~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~--~~~~l~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
......+...|+.-+..|..++.++...... .+..+..++.+.++..| +|+++.+|.+|+-+|-.++... .+.
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt----se~ 144 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT----SEQ 144 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc----hhh
Confidence 4455566666888888898888888764432 23455668899999999 5889999999999999887532 112
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhh-----hh--hccccchh------
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKE-----KK--FHSLGAAE------ 294 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~-----kr--~~~~l~~d------ 294 (939)
.++-.-+.++..+..++..++..||..|++|||++...++..=--.++..++..+-. .+ ....++|-
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 223333668888999999999999999999999997777554333344433322100 00 00001110
Q ss_pred ------hhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002304 295 ------CFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETM 363 (939)
Q Consensus 295 ------~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~AL 363 (939)
.+.- -..+.+++..+|.+.|.+|..-|+-||..|.+.+++-. ...++.|+++|......|+.-|++++
T Consensus 225 gk~P~P~~~~-v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 225 GKNPSPPFDV-VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred CCCCCCcHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 0110 14578899999999999999999999999997666643 34578999999999999999999999
Q ss_pred hhhhhcc----cccchhhHHHHHHHhcC-CCCHHHHHHHHHHHhhccCCchhHHHHHHHH-----HHHhhccCccc-hHH
Q 002304 364 HIMVTCE----HLNLEDKHMHMFLGTLV-DNSELVRCAARKILKLVKTPKLEFFRLFIDG-----LLENLKIYPQD-EAD 432 (939)
Q Consensus 364 gkI~~~~----~i~l~E~aL~~LL~~L~-D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~-----LL~~L~~~peD-r~~ 432 (939)
|+|.... ...+.-.+++.|..+|. .....+|++|..+++.|.-.+.+-++++++. |+..|.....+ |+.
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 9988621 11133457889999999 6666699999999999988888888877665 66777777766 899
Q ss_pred HHHHHHHhhcc-cccchHHHHHHHhhhcCCCCCCCCCCCchhHH
Q 002304 433 VFSVLFFIGRS-HGNFAACIIKEVCQEIEPDSDDKLGFDNARVA 475 (939)
Q Consensus 433 I~~aL~~LG~~-H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yi 475 (939)
+.||+..+-.. .++.+.-+|..- .|+|+.+-= .+.|...+
T Consensus 384 AawaIsN~ts~g~~~qi~yLv~~g--iI~plcdlL-~~~D~~ii 424 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQIKYLVEQG--IIKPLCDLL-TCPDVKII 424 (514)
T ss_pred HHHHHHhhcccCCHHHHHHHHHcC--Cchhhhhcc-cCCChHHH
Confidence 99999998422 134443333332 355655522 44455553
No 15
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=99.11 E-value=3.4e-10 Score=100.65 Aligned_cols=55 Identities=31% Similarity=0.384 Sum_probs=26.2
Q ss_pred hHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHh
Q 002304 304 AGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD-SVTVRLQALETMH 364 (939)
Q Consensus 304 ~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe-~~~VRl~Aa~ALg 364 (939)
.+.|+..|+|+++.||.+|+.+||+++. .++++.|.++++|+ ++.||..|+.|||
T Consensus 33 ~~~L~~~l~d~~~~vr~~a~~aL~~i~~------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 33 IPALIELLKDEDPMVRRAAARALGRIGD------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCHH------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3444445555555555555555555542 23455555544432 3344555555543
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.09 E-value=6.3e-09 Score=135.58 Aligned_cols=224 Identities=13% Similarity=0.110 Sum_probs=156.9
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
..++.+.+++++.++.+++.|+.+|..+...+. .+.++.++.+|..+++.+...++++||.+..... .++..
T Consensus 530 GAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~-~~d~~ 601 (2102)
T PLN03200 530 GAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-------AATISQLTALLLGDLPESKVHVLDVLGHVLSVAS-LEDLV 601 (2102)
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc-hhHHH
Confidence 344455566666666666666666666644332 1123555666666666666666666655432110 00000
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHH
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTF 307 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaL 307 (939)
.+....+.++..|..+++.++..++..|+++|+++..-..+...+ +...++++++
T Consensus 602 ~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~a-------------------------vv~agaIpPL 656 (2102)
T PLN03200 602 REGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCES-------------------------LATDEIINPC 656 (2102)
T ss_pred HHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHH-------------------------HHHcCCHHHH
Confidence 011112468899999999999999999999999996533333211 2357899999
Q ss_pred hhccCCCcHHHHHHHHHHHHhcccc--chh---hH-HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccccc---chhhH
Q 002304 308 VHGFEDEFYEVRKSACSSLGSLVIL--SEK---FA-GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLN---LEDKH 378 (939)
Q Consensus 308 I~~LeDE~~eVR~aAaeALGkL~~~--s~~---fA-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~---l~E~a 378 (939)
++.|.+...+||+.|+.+|+.+... ... +. ..++++|++++++.+..|+..|+.+|..|...+... ..+..
T Consensus 657 V~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~ 736 (2102)
T PLN03200 657 IKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDI 736 (2102)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc
Confidence 9999999999999999999988732 111 12 347999999999999999999999999998633222 44678
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 379 MHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 379 L~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
++.|.+.|++.++++|+.|..+|..+
T Consensus 737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L 762 (2102)
T PLN03200 737 ILPLTRVLREGTLEGKRNAARALAQL 762 (2102)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999999999998654
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.07 E-value=7.7e-09 Score=134.81 Aligned_cols=261 Identities=13% Similarity=0.095 Sum_probs=192.6
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc-chhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE-DVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
..+.+..++...+..++..|+.+|..+.+.+... ..-...+..+.++++|..+++.+|..|+..|+.+.... +++
T Consensus 405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n----den 480 (2102)
T PLN03200 405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV----DES 480 (2102)
T ss_pred chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----HHH
Confidence 3466788888889999999999998887542200 00112234789999999999999999999999886421 111
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHH
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTF 307 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaL 307 (939)
.+.-.-..++..|+++|+.++..+|.+|+++|+++...+++. +.+ +.+.+++++|
T Consensus 481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi------r~i-------------------V~~aGAIppL 535 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI------RAC-------------------VESAGAVPAL 535 (2102)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH------HHH-------------------HHHCCCHHHH
Confidence 000011457889999999999999999999999996544332 001 1156899999
Q ss_pred hhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccc-------cchhhHHH
Q 002304 308 VHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHL-------NLEDKHMH 380 (939)
Q Consensus 308 I~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i-------~l~E~aL~ 380 (939)
++.|.+.++++|..|+.+|+++..... .+.++.|+++|..++..+...++++||.|...... ......++
T Consensus 536 V~LL~sgd~~~q~~Aa~AL~nLi~~~d---~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~ 612 (2102)
T PLN03200 536 LWLLKNGGPKGQEIAAKTLTKLVRTAD---AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR 612 (2102)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhccc---hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHH
Confidence 999999999999999999999964221 35678899999999999999999999998541111 11235899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhccCCchhH-----HHHHHHHHHHhhccCccc-hHHHHHHHHHhh
Q 002304 381 MFLGTLVDNSELVRCAARKILKLVKTPKLEF-----FRLFIDGLLENLKIYPQD-EADVFSVLFFIG 441 (939)
Q Consensus 381 ~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~-----l~~~l~~LL~~L~~~peD-r~~I~~aL~~LG 441 (939)
.|..+|++++..+++.|..+|..+--.+... ..-++..|+..|.....+ ++.+.+||.++-
T Consensus 613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 613 TLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 9999999999999999999987764433332 122455666666655433 888999998885
No 18
>PTZ00429 beta-adaptin; Provisional
Probab=99.06 E-value=4.8e-07 Score=110.67 Aligned_cols=338 Identities=16% Similarity=0.106 Sum_probs=200.1
Q ss_pred hcCCchHHHHHHhhhccccCCChhhH----HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhh--hhhHHHHHHHh
Q 002304 124 CFASSVSVRLWLLRNAERFNVRPHLL----FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDL--IQGCCCRAVEL 197 (939)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~~~~L----~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l--~~~i~~~l~~l 197 (939)
|-..+...|..-+|.--. ++...+ ...+.+.+.|++|+||++|+.++.++.+..- .+ ..++.+.+.++
T Consensus 114 l~d~Np~IRaLALRtLs~--Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p----elv~~~~~~~~L~~L 187 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMC--IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM----QLFYQQDFKKDLVEL 187 (746)
T ss_pred cCCCCHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc----ccccccchHHHHHHH
Confidence 344455555555555221 444443 3344566777888888888888877764211 11 11345666677
Q ss_pred hCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHH---HHHHh
Q 002304 198 LRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIV---LLQTL 274 (939)
Q Consensus 198 L~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~---LlqtL 274 (939)
|.|.|+.|-..|+.+|..+...- . ....+....+..||..+.+.+.--+...-+.|.+......+. ++..+
T Consensus 188 L~D~dp~Vv~nAl~aL~eI~~~~-----~-~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l 261 (746)
T PTZ00429 188 LNDNNPVVASNAAAIVCEVNDYG-----S-EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRV 261 (746)
T ss_pred hcCCCccHHHHHHHHHHHHHHhC-----c-hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 77888888888877777664310 0 012223445556666666555555555555555443211111 11111
Q ss_pred hHHHhhhh-----hhhhhccccc----hhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHH
Q 002304 275 SKKVLGAT-----KEKKFHSLGA----AECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLV 345 (939)
Q Consensus 275 ~kklm~~l-----k~kr~~~~l~----~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lv 345 (939)
...+.... ...+..-.+. .+.....-.....+++..+. ...+||..+...|-.+....|.+...-++...
T Consensus 262 ~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff 340 (746)
T PTZ00429 262 LPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIHALLVIFPNLLRTNLDSFY 340 (746)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhh
Confidence 11100000 0000000000 00000000112346666653 56799999999998888777765544455555
Q ss_pred HHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 002304 346 DMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKI 425 (939)
Q Consensus 346 dmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~ 425 (939)
-..+|++. ||..+++.|.++++..++ ++.+.-|..-..|.+.++|+.+..++|.+...-....+.+++.|++.+..
T Consensus 341 ~~~~Dp~y-IK~~KLeIL~~Lane~Nv---~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~ 416 (746)
T PTZ00429 341 VRYSDPPF-VKLEKLRLLLKLVTPSVA---PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDR 416 (746)
T ss_pred cccCCcHH-HHHHHHHHHHHHcCcccH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC
Confidence 66688885 999999999999964433 45778888888899999999999999998765556677889999888765
Q ss_pred CccchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhcc
Q 002304 426 YPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVP 485 (939)
Q Consensus 426 ~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~ 485 (939)
..+--..+..+++.|=+++|+. .++..|.+... ...+++|...+.+|-+++.-
T Consensus 417 ~~~~v~e~i~vik~IlrkyP~~--~il~~L~~~~~-----~~~i~e~~AKaaiiWILGEy 469 (746)
T PTZ00429 417 RPELLPQVVTAAKDIVRKYPEL--LMLDTLVTDYG-----ADEVVEEEAKVSLLWMLGEY 469 (746)
T ss_pred CchhHHHHHHHHHHHHHHCccH--HHHHHHHHhhc-----ccccccHHHHHHHHHHHHhh
Confidence 4433345667788887777764 25566665321 12568888888888888864
No 19
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=99.05 E-value=2.8e-09 Score=114.13 Aligned_cols=217 Identities=18% Similarity=0.163 Sum_probs=155.8
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhC--CCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLR--DHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~--Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
.+..+.+...|....-...++-.||++++... .+.+..-|. +..+.||.+|.++||.++.
T Consensus 37 ~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~A----------v~~l~~vl~desq~pmvRhEAaealga~~~-------- 98 (289)
T KOG0567|consen 37 AIKAITKAFIDDSALLKHELAYVLGQMQDEDA----------VPVLVEVLLDESQEPMVRHEAAEALGAIGD-------- 98 (289)
T ss_pred HHHHHHHhcccchhhhccchhhhhhhhccchh----------hHHHHHHhcccccchHHHHHHHHHHHhhcc--------
Confidence 37777777777777777778888888887654 355655564 5578899999999999885
Q ss_pred ccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcH--H-----HHHHHhhHHHhhhhhhhhhcccc-------c
Q 002304 227 KNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISE--I-----VLLQTLSKKVLGATKEKKFHSLG-------A 292 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~--~-----~LlqtL~kklm~~lk~kr~~~~l-------~ 292 (939)
.+....+-+..+|+...||....-|+.++.+.+. . ...+ .+.+.-. ..+..+++ +
T Consensus 99 -------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S-vdPa~p~---~~ssv~~lr~~lld~t 167 (289)
T KOG0567|consen 99 -------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS-VDPAPPA---NLSSVHELRAELLDET 167 (289)
T ss_pred -------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc-CCCCCcc---ccccHHHHHHHHHhcc
Confidence 2334455555689999999988888887754210 0 0000 0000000 00000000 0
Q ss_pred h---hh----h---hhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC--CHHHHHHHH
Q 002304 293 A---EC----F---EISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD--SVTVRLQAL 360 (939)
Q Consensus 293 ~---d~----~---~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe--~~~VRl~Aa 360 (939)
. ++ | +++...++-+|+.+|.|+..-.|-.++.-+|+|.. ..+++.|.+.|.|+ .+.||..|+
T Consensus 168 ~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s------~~ai~~L~k~L~d~~E~pMVRhEaA 241 (289)
T KOG0567|consen 168 KPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS------PAAIPSLIKVLLDETEHPMVRHEAA 241 (289)
T ss_pred hhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc------hhhhHHHHHHHHhhhcchHHHHHHH
Confidence 0 01 2 34557789999999999999999999999999995 46999999999987 567999999
Q ss_pred HHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC
Q 002304 361 ETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTP 407 (939)
Q Consensus 361 ~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~ 407 (939)
+|||-||. |+.++.|-+.++|+.+-||+....+|...-..
T Consensus 242 eALGaIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 242 EALGAIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred HHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 99999994 78999999999999999999998888765443
No 20
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=99.05 E-value=9.5e-10 Score=97.82 Aligned_cols=86 Identities=27% Similarity=0.328 Sum_probs=75.8
Q ss_pred hHHHhhcc-CCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHH
Q 002304 304 AGTFVHGF-EDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMF 382 (939)
Q Consensus 304 ~gaLI~~L-eDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~L 382 (939)
++.|+..| +|+++.||..|+..||+++. .++++.|.++++|+++.||..|+.+||+++. ++.++.|
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------PEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------HHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHH
Confidence 35788888 99999999999999999985 4799999999999999999999999999984 5689999
Q ss_pred HHhcCCC-CHHHHHHHHHHHh
Q 002304 383 LGTLVDN-SELVRCAARKILK 402 (939)
Q Consensus 383 L~~L~D~-~~dVR~aA~~aLg 402 (939)
..++.|+ +..||.++..+||
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhcC
Confidence 9989875 5667999988875
No 21
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2.4e-08 Score=116.14 Aligned_cols=262 Identities=17% Similarity=0.129 Sum_probs=190.9
Q ss_pred hhHHHHHHHhhcCCch---HHHHHHhhh-ccccC-----CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc-c
Q 002304 114 TVDDRFFVSLCFASSV---SVRLWLLRN-AERFN-----VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE-D 183 (939)
Q Consensus 114 ~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~-----v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~ 183 (939)
-+.+++-..|+++.+. -...|-+.| |-+-. +-+...+..|..++.+|++.||..|+.|||.+..++... +
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 3445555566666544 267888888 22110 134455678899999999999999999999998765321 1
Q ss_pred hhhhhhHHHHHHHhhCCCCc-hHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc
Q 002304 184 VDLIQGCCCRAVELLRDHED-CVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 184 ~~l~~~i~~~l~~lL~Ddd~-~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i 262 (939)
--+.-+.++.++.++..++. .-.+.|+=+|..+-..- +......-+..++..|...+.+.|..|..-|++|+..+
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk----~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK----NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC----CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 12233467788888887776 44445555555543211 11112233467889999999999999999999999999
Q ss_pred cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----
Q 002304 263 GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA----- 337 (939)
Q Consensus 263 ~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA----- 337 (939)
.+-+.+.+.- .++.++++.+|+.|+.....|+..|..++|.+...+....
T Consensus 265 sdg~ne~iq~-------------------------vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~ 319 (514)
T KOG0166|consen 265 TDGSNEKIQM-------------------------VIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN 319 (514)
T ss_pred hcCChHHHHH-------------------------HHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence 7766555321 1368899999999999999999999999999887655543
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhhcccc-----cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 338 GEALNLLVDMLN-DDSVTVRLQALETMHIMVTCEHL-----NLEDKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 338 ~~ALd~LvdmLn-De~~~VRl~Aa~ALgkI~~~~~i-----~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
..+++.|..++. .+....|..|..++++|.. |.. .+....+|.|+.+|...+-++|++|+.|++.+-
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 457899999998 5666699999999999986 321 133457899999999999999999999998753
No 22
>PTZ00429 beta-adaptin; Provisional
Probab=98.97 E-value=1.2e-07 Score=116.00 Aligned_cols=285 Identities=13% Similarity=0.042 Sum_probs=196.1
Q ss_pred CCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhh
Q 002304 143 NVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 143 ~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~ 222 (939)
|..-..++..+.+....+|..+|+..--.|..+++..- .+.--..+.+.+=++|.++.||-.|++.|+.+...
T Consensus 63 G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p----elalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~--- 135 (746)
T PTZ00429 63 GRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP----EKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVS--- 135 (746)
T ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH---
Confidence 34455677777778888899999998888877765321 11112356677788999999999999999987642
Q ss_pred hcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhc
Q 002304 223 CIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASA 302 (939)
Q Consensus 223 ~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~ 302 (939)
.+++..+..|.+.+.|+++.||+.||-++.++-...++.+. ..+
T Consensus 136 --------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~----------------------------~~~ 179 (746)
T PTZ00429 136 --------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY----------------------------QQD 179 (746)
T ss_pred --------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc----------------------------ccc
Confidence 13345667788899999999999999999998543333211 122
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHH
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEK---FAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHM 379 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~---fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL 379 (939)
..+-+...|.|.+..|..+|+.+|.++...++. +....+..|...+++-++.-+...++.|.+-.+.. -.-.++.+
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-~~e~~~il 258 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-KESAETLL 258 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-cHHHHHHH
Confidence 334455678899999999999999888644332 34667777888888888888888888887754321 11124577
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhccCC-chhHHHHHH----HHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHH
Q 002304 380 HMFLGTLVDNSELVRCAARKILKLVKTP-KLEFFRLFI----DGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKE 454 (939)
Q Consensus 380 ~~LL~~L~D~~~dVR~aA~~aLg~i~l~-~~~~l~~~l----~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~ 454 (939)
+.+...|...|+-|--++.+++-.+... +....+.++ ..|+..+...|+.+..+++.+..|-+++|.++.+-++.
T Consensus 259 ~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~ 338 (746)
T PTZ00429 259 TRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDS 338 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHh
Confidence 8888888899999988888866554322 223333333 33444455567778888889999988888887765555
Q ss_pred HhhhcCCCCCCCCCCCchhHHHHHHHH
Q 002304 455 VCQEIEPDSDDKLGFDNARVAAFLVLA 481 (939)
Q Consensus 455 Ll~~i~p~~~~e~~~dd~~yiA~Lili 481 (939)
++-. .+||.|+...-|=
T Consensus 339 Ff~~----------~~Dp~yIK~~KLe 355 (746)
T PTZ00429 339 FYVR----------YSDPPFVKLEKLR 355 (746)
T ss_pred hhcc----------cCCcHHHHHHHHH
Confidence 4443 3678888765443
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.79 E-value=5.1e-07 Score=106.39 Aligned_cols=239 Identities=16% Similarity=0.105 Sum_probs=171.6
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccc-cchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhc
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVF-EDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~-~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
.......+...+.+|+|.||+-|+.+|+++...... ...-...++++.++..+.|+|.+|-..|+++|..++......
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~- 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL- 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-
Confidence 345667888899999999999999999997553210 111123568999999999999999999999999998632100
Q ss_pred ccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
+.-+..+....|...+.-.+..||..+.+.+.++...|++.+.-. ..+|..
T Consensus 154 ----~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~-------------------------~~sgll 204 (503)
T PF10508_consen 154 ----EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV-------------------------VNSGLL 204 (503)
T ss_pred ----HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH-------------------------HhccHH
Confidence 000012336778888888899999999999999988887765322 246788
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccccchh--h-H-HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccc------
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVILSEK--F-A-GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNL------ 374 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~--f-A-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l------ 374 (939)
+.++..|+|+|.-||.+|++-|++++..... + . ...++.|.+++++...+-|..++.-.|.|.-.|++..
T Consensus 205 ~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 205 DLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH
Confidence 8999999999999999999999999863222 1 1 3467888888877755556555555555433222222
Q ss_pred ---hhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHH
Q 002304 375 ---EDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLF 415 (939)
Q Consensus 375 ---~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~ 415 (939)
-...++.+...++..++..|..|-.++|.++ .+.++.+.+
T Consensus 285 ~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig-st~~G~~~L 327 (503)
T PF10508_consen 285 LELYPAFLERLFSMLESQDPTIREVAFDTLGQIG-STVEGKQLL 327 (503)
T ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh-CCHHHHHHH
Confidence 1234455567778999999999999999999 455664433
No 24
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.71 E-value=1.3e-07 Score=96.86 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=115.0
Q ss_pred cHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHH
Q 002304 315 FYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVR 394 (939)
Q Consensus 315 ~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR 394 (939)
++.||..|+.+||.+....|.+....++.+..+|+|+++.||..|+..|.++-..+.+.+....+..++.+|.|++++||
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 46899999999999999999999999999999999999999999999999999878888888777999999999999999
Q ss_pred HHHHHHHhhccCC-chhHHHHHHHHHHHhhccCc-------cc---hHHHHHHHHHhhcccccchHHHHHHHhhhc
Q 002304 395 CAARKILKLVKTP-KLEFFRLFIDGLLENLKIYP-------QD---EADVFSVLFFIGRSHGNFAACIIKEVCQEI 459 (939)
Q Consensus 395 ~aA~~aLg~i~l~-~~~~l~~~l~~LL~~L~~~p-------eD---r~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i 459 (939)
..|...+..+... +...+...+..++..+..+. .+ |+.|++-|-..=.+ .+..+.++.++.+.+
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHH
Confidence 9999999998766 56666677777777777753 23 34444443333222 244555666665553
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=3.1e-05 Score=96.24 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=103.6
Q ss_pred hhHHHHhhhccCCchhHHHHHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcc
Q 002304 100 RLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHV 179 (939)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~ 179 (939)
.|+.|+.|.....+.=...+..=+|+ ....|.|=.=+++ ++....-.++...++.+.+.||+.-.+....+....
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~R--kl~~~~w~~l~~e---~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~ 111 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLR--KLLTKHWSRLSAE---VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND 111 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHH--HHHHHHhhcCCHH---HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 56666666644444222222222222 2233466544444 444444446667888999999999999999988654
Q ss_pred cccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHH
Q 002304 180 VFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNAL 259 (939)
Q Consensus 180 ~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~AL 259 (939)
. +. -++++++-+.+..+++++.-|..|+..|..+...+. +......++...-+.+.++|++..||..|++++
T Consensus 112 l--~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~-----~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~ 183 (1075)
T KOG2171|consen 112 L--PE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG-----NTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRAL 183 (1075)
T ss_pred c--cc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc-----cccchhHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 4 22 466777888888999999999999999998776432 112334566777788899999999999999999
Q ss_pred hcc
Q 002304 260 GKV 262 (939)
Q Consensus 260 G~i 262 (939)
|.+
T Consensus 184 ~a~ 186 (1075)
T KOG2171|consen 184 GAF 186 (1075)
T ss_pred HHH
Confidence 987
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=3.3e-06 Score=99.40 Aligned_cols=327 Identities=19% Similarity=0.156 Sum_probs=182.0
Q ss_pred hhHHHHhhhccCCchhHHHHHHHh---hcCCch-HHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhh
Q 002304 100 RLAAAAALAVISDHTVDDRFFVSL---CFASSV-SVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCL 175 (939)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L 175 (939)
.|..||.+-+.++.+--+--|-+| |=...- -.+-|.. -.-..+++.++.+.+++.|-+|.-|+..+-++
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~-------rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT-------RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc-------CchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 778888887777765555555555 222111 1233332 23347889999999999999999999888765
Q ss_pred hhcc-cccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHH
Q 002304 176 LKHV-VFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVE 254 (939)
Q Consensus 176 ~~~~-~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~ 254 (939)
---. ...... ....+..+-.+-+|+++.||....++|..+-+..+ +.-++..+.+++-.....+|.+..|--+
T Consensus 202 i~~~~qal~~~-iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~-----dkl~phl~~IveyML~~tqd~dE~VALE 275 (885)
T KOG2023|consen 202 IIIQTQALYVH-IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP-----DKLVPHLDNIVEYMLQRTQDVDENVALE 275 (885)
T ss_pred eecCcHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH-----HhcccchHHHHHHHHHHccCcchhHHHH
Confidence 3211 101111 12234445556699999999999999987765321 1123344667888888999999999999
Q ss_pred HHHHHhcccC--CcHHHHHHHhhHH---Hhhhhhhhhh-ccccc-h---------h-----hhhhhhhcchHHH-hhccC
Q 002304 255 AFNALGKVGM--ISEIVLLQTLSKK---VLGATKEKKF-HSLGA-A---------E-----CFEISASAAAGTF-VHGFE 312 (939)
Q Consensus 255 AA~ALG~i~~--vs~~~LlqtL~kk---lm~~lk~kr~-~~~l~-~---------d-----~~~l~~s~a~gaL-I~~Le 312 (939)
|++-.-.+.. ...++|.+.|.|- +++.++=... ...+. . | +|.-......+.- -.-=+
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDd 355 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDD 355 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccc
Confidence 9998877733 6788888887664 2222210000 00000 0 0 0100000000000 00000
Q ss_pred CC----------cHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccccc----chhh
Q 002304 313 DE----------FYEVRKSACSSLGSLVILS-EKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLN----LEDK 377 (939)
Q Consensus 313 DE----------~~eVR~aAaeALGkL~~~s-~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~----l~E~ 377 (939)
|+ +|..|+..|.+|.-|++-- .++-..++|.|-+.|..+.|.||.+++-|||-|+. |... =-.+
T Consensus 356 ddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE-GcM~g~~p~Lpe 434 (885)
T KOG2023|consen 356 DDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE-GCMQGFVPHLPE 434 (885)
T ss_pred cccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH-HHhhhcccchHH
Confidence 11 2667777777776666421 12224455666666666777777777777777764 1111 1124
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhc-----cCCchhHHHHHHHHHHHhh-ccCccchHHHHHHHHHh
Q 002304 378 HMHMFLGTLVDNSELVRCAARKILKLV-----KTPKLEFFRLFIDGLLENL-KIYPQDEADVFSVLFFI 440 (939)
Q Consensus 378 aL~~LL~~L~D~~~dVR~aA~~aLg~i-----~l~~~~~l~~~l~~LL~~L-~~~peDr~~I~~aL~~L 440 (939)
.+|.++.+|.|..|-||+-....|+.- ..+..+-+..+++.|+..+ +..-.+...+..|+.-+
T Consensus 435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL 503 (885)
T ss_pred HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 666677777777777776655555442 2333344555555555432 22223344444444444
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.55 E-value=5e-06 Score=98.15 Aligned_cols=259 Identities=18% Similarity=0.099 Sum_probs=169.7
Q ss_pred HHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccccccc
Q 002304 153 CLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDC 232 (939)
Q Consensus 153 L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~l 232 (939)
+...+++.+...=..+.+.|..+.+... +.++...+.+.+...|..+++.||..|++.|+......... .+.-.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~--~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~----~~~~~ 116 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS--PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGA----AQLLV 116 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHH----HHHhc
Confidence 3444555555555666777777766433 22445566778899999999999999999999876532110 01111
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC
Q 002304 233 SDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE 312 (939)
Q Consensus 233 vddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le 312 (939)
-.+.+..|+..+.|++..|...|+++|.++...+... ... .+++....|...+.
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l-------------------------~~~~~~~~L~~l~~ 170 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQL-------------------------FDSNLLSKLKSLMS 170 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHH-------------------------hCcchHHHHHHHHh
Confidence 1568889999999999999999999999996543222 111 13444556666676
Q ss_pred CCcHHHHHHHHHHHHhccccchhhHH-----HHHHHHHHHhcCCCHHHHHHHHHHHhhhhh--cc-cccchhhHHHHHHH
Q 002304 313 DEFYEVRKSACSSLGSLVILSEKFAG-----EALNLLVDMLNDDSVTVRLQALETMHIMVT--CE-HLNLEDKHMHMFLG 384 (939)
Q Consensus 313 DE~~eVR~aAaeALGkL~~~s~~fA~-----~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~--~~-~i~l~E~aL~~LL~ 384 (939)
-++..||..+.+.+.+++..+++.+. ..++.+++.++++|.-||+.|++.|+.++. +| ..-.+...++.|..
T Consensus 171 ~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~ 250 (503)
T PF10508_consen 171 QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSN 250 (503)
T ss_pred ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHH
Confidence 66779999999999999887777652 267899999999999999999999999985 11 01122346677777
Q ss_pred hcCCCCHHHHHHHH------HHHhhccCCchhHHHHHHHHHHHhhc-----cCccchHHHHHHHHHhhcc
Q 002304 385 TLVDNSELVRCAAR------KILKLVKTPKLEFFRLFIDGLLENLK-----IYPQDEADVFSVLFFIGRS 443 (939)
Q Consensus 385 ~L~D~~~dVR~aA~------~aLg~i~l~~~~~l~~~l~~LL~~L~-----~~peDr~~I~~aL~~LG~~ 443 (939)
.+.+...+-|-..- ..+|.+...+...+-.....++..+- .++.-+..++.+++.||.+
T Consensus 251 ~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 251 LLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred HHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence 77655444322222 33344443222232222333333333 2233367889999999954
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=1.9e-06 Score=101.38 Aligned_cols=355 Identities=16% Similarity=0.141 Sum_probs=212.7
Q ss_pred CCCCcchhhhhhhhcc-ccccccchhhHHHHhhhccCCchhHH------------HHHHHhhcCCchHHHHHHhh--h--
Q 002304 76 HPHFSPLISNSLRSNS-LLFSSYSPRLAAAAALAVISDHTVDD------------RFFVSLCFASSVSVRLWLLR--N-- 138 (939)
Q Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~-- 138 (939)
.|.+=|++..-+-++. ..- -+.+.+|++|-|=..+.+|- +++.- ---++..-|.--.. |
T Consensus 126 wpelLp~L~~~L~s~d~n~~---EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f-~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 126 WPELLPQLCELLDSPDYNTC---EGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQF-FKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred chhHHHHHHHHhcCCccccc---chhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHH-HhCCChhHHHHHHhhhhhe
Confidence 4555566655555433 222 25788999998766665554 11111 11112222221111 1
Q ss_pred ----ccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccc-cchhhhhhHHHHHHHhhCCCCchHHHHHHHHH
Q 002304 139 ----AERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVF-EDVDLIQGCCCRAVELLRDHEDCVRCAAVRVV 213 (939)
Q Consensus 139 ----~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~-~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aL 213 (939)
..-+-++-+..+..+..+-+|++|.||+..-.||.-+-+.... .-.+ ...+..-.+...+|.|++|-++|.+-.
T Consensus 202 i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 202 IIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 1111123445566777788999999999999999877653210 0001 123455567788999999999998866
Q ss_pred HHhcchh-------------hh-----------------hcccccccccchhHH-H-----HHHHhhc-------C----
Q 002304 214 SEWGKML-------------IA-----------------CIDEKNRIDCSDVVF-I-----QLCSMIR-------D---- 246 (939)
Q Consensus 214 g~lg~~~-------------~~-----------------~~~~~~~i~lvddaf-~-----aLc~aL~-------D---- 246 (939)
-.++... ++ .++++..++-.++-+ . +....-+ |
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 6555321 00 011111000000000 0 0000000 1
Q ss_pred ------CCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHH
Q 002304 247 ------MRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRK 320 (939)
Q Consensus 247 ------~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~ 320 (939)
.+|..|+..|.+|+=+.++=.+-++.. +.|-+-..|..++|-||.
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~-----------------------------l~PlLk~~L~~~~W~vrE 411 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVFGDELLPI-----------------------------LLPLLKEHLSSEEWKVRE 411 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhhHHHHHHH-----------------------------HHHHHHHHcCcchhhhhh
Confidence 239999998888888776432222221 223344456779999999
Q ss_pred HHHHHHHhccccchhh----HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh----cccccchhhHHHHHHHhcCCCCHH
Q 002304 321 SACSSLGSLVILSEKF----AGEALNLLVDMLNDDSVTVRLQALETMHIMVT----CEHLNLEDKHMHMFLGTLVDNSEL 392 (939)
Q Consensus 321 aAaeALGkL~~~s~~f----A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~----~~~i~l~E~aL~~LL~~L~D~~~d 392 (939)
+++-|||.++-..-.. -.+.+|+|+.+|+|.-+-||.-.-.+|++.+. ..+-..-...+..|+..+-|.+..
T Consensus 412 agvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~ 491 (885)
T KOG2023|consen 412 AGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKK 491 (885)
T ss_pred hhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHH
Confidence 9999999988532221 14678999999999999999999999999985 111122245778888899999999
Q ss_pred HHHHHHHHHhhccCC----chhHHHHHHHHHHHhhccCc-cchHHHHHHHHHhh------cccccchHHHHHHHhhhcCC
Q 002304 393 VRCAARKILKLVKTP----KLEFFRLFIDGLLENLKIYP-QDEADVFSVLFFIG------RSHGNFAACIIKEVCQEIEP 461 (939)
Q Consensus 393 VR~aA~~aLg~i~l~----~~~~l~~~l~~LL~~L~~~p-eDr~~I~~aL~~LG------~~H~~lv~~lv~~Ll~~i~p 461 (939)
|.+||..++....-. =+.-+...++.|..+..+|- ..-.-.+.|++.++ -++|.+++-+++-|++.-+.
T Consensus 492 VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ 571 (885)
T KOG2023|consen 492 VQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWEL 571 (885)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHh
Confidence 999999888664322 23345666777777777775 22334566666664 34688888888877775444
Q ss_pred CCC
Q 002304 462 DSD 464 (939)
Q Consensus 462 ~~~ 464 (939)
..+
T Consensus 572 lsd 574 (885)
T KOG2023|consen 572 LSD 574 (885)
T ss_pred cCc
Confidence 444
No 29
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.50 E-value=5.6e-06 Score=89.34 Aligned_cols=219 Identities=20% Similarity=0.152 Sum_probs=125.2
Q ss_pred HHHHHhhhcCCCHH---HHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 150 FTVCLGLTKDPYPY---VREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~---VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
+..+.+.+.+ ... -|--|+-.|..+.+.+. ..+..++..|+.+.....++..||.|++
T Consensus 5 i~~i~~~L~~-~s~~l~~r~rALf~Lr~l~~~~~----------i~~i~ka~~d~s~llkhe~ay~LgQ~~~-------- 65 (289)
T KOG0567|consen 5 IETIGNILVN-KSQPLQNRFRALFNLRNLLGPAA----------IKAITKAFIDDSALLKHELAYVLGQMQD-------- 65 (289)
T ss_pred HHHHHHHHcC-ccHHHHHHHHHHHhhhccCChHH----------HHHHHHhcccchhhhccchhhhhhhhcc--------
Confidence 3444555554 222 23345555555544433 4566777888888888899999999987
Q ss_pred ccccccchhHHHHHHHhhcCC--CHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhh-------hhhhhhhccccchh--
Q 002304 227 KNRIDCSDVVFIQLCSMIRDM--RMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLG-------ATKEKKFHSLGAAE-- 294 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~aL~D~--s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~-------~lk~kr~~~~l~~d-- 294 (939)
.+++..|...+.|. .+.||.+||++||.++. .+.++|.+..++..+. ++++.+-.....++
T Consensus 66 -------~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 66 -------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred -------chhhHHHHHHhcccccchHHHHHHHHHHHhhcchhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccc
Confidence 46778888877655 58899999999999984 3444544333111000 11111111111110
Q ss_pred --hhhhhhhcc------hHHHhhccCCC--cHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 002304 295 --CFEISASAA------AGTFVHGFEDE--FYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMH 364 (939)
Q Consensus 295 --~~~l~~s~a------~gaLI~~LeDE--~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALg 364 (939)
-+...++.+ +.-+-..|-|+ ...=|..|.-+|.++|. .+++..|++-+.|++..-|..++-.+|
T Consensus 139 ~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~------EeaI~al~~~l~~~SalfrhEvAfVfG 212 (289)
T KOG0567|consen 139 SSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT------EEAINALIDGLADDSALFRHEVAFVFG 212 (289)
T ss_pred cCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc------HHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 011112211 12233334343 22335566666666664 456777777777777777777777777
Q ss_pred hhhhcccccchhhHHHHHHHhcCC--CCHHHHHHHHHHHhhccCC
Q 002304 365 IMVTCEHLNLEDKHMHMFLGTLVD--NSELVRCAARKILKLVKTP 407 (939)
Q Consensus 365 kI~~~~~i~l~E~aL~~LL~~L~D--~~~dVR~aA~~aLg~i~l~ 407 (939)
+|.. ..+++.+.+.|.| +++.||..+++|||.|+.+
T Consensus 213 Ql~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 213 QLQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE 250 (289)
T ss_pred hccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence 7763 3466666666654 4666777777777776653
No 30
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=4.5e-06 Score=92.98 Aligned_cols=297 Identities=16% Similarity=0.041 Sum_probs=187.2
Q ss_pred ccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchh
Q 002304 141 RFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKML 220 (939)
Q Consensus 141 ~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~ 220 (939)
|-++-...-+.++..+-+..|-+||+.|..+|..|-.....-.+-+..+-+|.++.++.-.|..||.-+..+++.++-.-
T Consensus 160 k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 160 KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 44455555567778899999999999999999988653221011122335788999999999999999999999887532
Q ss_pred hhhcc-cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhh-hhh-cccc-chh--
Q 002304 221 IACID-EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKE-KKF-HSLG-AAE-- 294 (939)
Q Consensus 221 ~~~~~-~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~-kr~-~~~l-~~d-- 294 (939)
.+..- .+.. ...+.+|+++++|++..|...|+.+|+.+....+ +..+.....-+..+-+ .+. -+.+ .++
T Consensus 240 ~~Rk~Laqae----p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 240 RARKILAQAE----PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred HHHHHHHhcc----cchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 11100 0001 2356899999999999999999999999965321 2111111110000000 000 0000 000
Q ss_pred -----------hhhhhhhcchHHHhhccCCC-cHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHhcCCCHHHHH
Q 002304 295 -----------CFEISASAAAGTFVHGFEDE-FYEVRKSACSSLGSLVILSEK-----FAGEALNLLVDMLNDDSVTVRL 357 (939)
Q Consensus 295 -----------~~~l~~s~a~gaLI~~LeDE-~~eVR~aAaeALGkL~~~s~~-----fA~~ALd~LvdmLnDe~~~VRl 357 (939)
.+-+.+.+...+||..|.-- +.++...|+..|..|+..+.- +...|++.|+.++-|....||.
T Consensus 315 CIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqs 394 (550)
T KOG4224|consen 315 CIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQS 394 (550)
T ss_pred HHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHH
Confidence 01133556677899888643 345999999999999863211 2245899999999999999999
Q ss_pred HHHHHHhhhhhcc--cccch-hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC-------------chhHHHHHHHHHHH
Q 002304 358 QALETMHIMVTCE--HLNLE-DKHMHMFLGTLVDNSELVRCAARKILKLVKTP-------------KLEFFRLFIDGLLE 421 (939)
Q Consensus 358 ~Aa~ALgkI~~~~--~i~l~-E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~-------------~~~~l~~~l~~LL~ 421 (939)
.--.++..++-.+ +..+. --.+|.++..+.|++.+||-.++.+|+...-. .+.+++..+-+.+.
T Consensus 395 eisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~ 474 (550)
T KOG4224|consen 395 EISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLA 474 (550)
T ss_pred HHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHh
Confidence 8888887777322 12221 23568899999999999999999988764311 12333444444443
Q ss_pred hhccCccchHHHHHHHHHhhccc
Q 002304 422 NLKIYPQDEADVFSVLFFIGRSH 444 (939)
Q Consensus 422 ~L~~~peDr~~I~~aL~~LG~~H 444 (939)
..+...|..+.|.+.++-..|
T Consensus 475 --S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 475 --SHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred --hhHHHHHHHHHHHHHHHHHhC
Confidence 233334555555555555544
No 31
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.35 E-value=1.6e-05 Score=98.44 Aligned_cols=272 Identities=17% Similarity=0.122 Sum_probs=179.3
Q ss_pred CHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHH
Q 002304 161 YPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQL 240 (939)
Q Consensus 161 Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aL 240 (939)
.+.-+.+|++-|..+...-. ++....-++|-++.+++|.++.||.+|++.|..+-..+......+..+ .++-.|..|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~--de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani-F~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYID--DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANI-FPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcc--hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchh-hHhhhhhhh
Confidence 45677888887777654321 223445678999999999999999999999998765542221112122 246678899
Q ss_pred HHhhcC-CCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHh---hhhhhhhhcccc-chhhhhhhhhcchHHHhhccCCCc
Q 002304 241 CSMIRD-MRMEVRVEAFNALGKVGMISEIVLLQTLSKKVL---GATKEKKFHSLG-AAECFEISASAAAGTFVHGFEDEF 315 (939)
Q Consensus 241 c~aL~D-~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm---~~lk~kr~~~~l-~~d~~~l~~s~a~gaLI~~LeDE~ 315 (939)
.+++.| ..-.||.+=|.-|+.+....-.+|+.+-..... +.... +..++. ......-+...+-..++..|.|+.
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~ns-et~~~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNS-ETAPEQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccc-ccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 999999 999999999999999976666666654432211 11111 011111 111111123445667888999999
Q ss_pred HHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cccccchhhHHHHHHHhcCCC
Q 002304 316 YEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEHLNLEDKHMHMFLGTLVDN 389 (939)
Q Consensus 316 ~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~i~l~E~aL~~LL~~L~D~ 389 (939)
..||++-.++|+.|-. -|. .-.+..|+.-|||.+|..|-+-.+.+..++. .|..++.|-.+|.+...|.|.
T Consensus 592 ~~Vkr~Lle~i~~LC~---FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCV---FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred hHHHHHHHHHHHHHHH---HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCc
Confidence 9999999999966542 111 2368999999999999999999999998775 456667788999999999999
Q ss_pred CHHHHHHHHHHHhh---ccCCchhHHHHHHHHHHHhhccCccc--hHHHHHHHHHh
Q 002304 390 SELVRCAARKILKL---VKTPKLEFFRLFIDGLLENLKIYPQD--EADVFSVLFFI 440 (939)
Q Consensus 390 ~~dVR~aA~~aLg~---i~l~~~~~l~~~l~~LL~~L~~~peD--r~~I~~aL~~L 440 (939)
.+-|=..|-..|.. .++-....+...++..++. --+|.+ |+.+...+..+
T Consensus 669 EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~Pl-L~hPN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPL-LCHPNLWIRRAVLGIIAAI 723 (1431)
T ss_pred chhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhh-eeCchHHHHHHHHHHHHHH
Confidence 99887655554432 2333333333334444442 235654 55444433333
No 32
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=1.3e-05 Score=98.04 Aligned_cols=228 Identities=19% Similarity=0.157 Sum_probs=149.3
Q ss_pred cCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhh
Q 002304 142 FNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLI 221 (939)
Q Consensus 142 ~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~ 221 (939)
.+++...++..+..++.|.++.||.+.+-....+..- ..-...++...+.+...++|+++.||..-+.-+......
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~--~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v-- 467 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPI--LPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV-- 467 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCcc--CCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc--
Confidence 3456667778888999999999999987765544211 001123455678899999999999999998766433221
Q ss_pred hhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhccc-CCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhh
Q 002304 222 ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVG-MISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA 300 (939)
Q Consensus 222 ~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~-~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~ 300 (939)
++.....-..+..+.+|..+..|..|+||.+.-+.+.... +....+..
T Consensus 468 --~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~----------------------------- 516 (759)
T KOG0211|consen 468 --NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD----------------------------- 516 (759)
T ss_pred --cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh-----------------------------
Confidence 1111011122456678889999999999999998887652 22222322
Q ss_pred hcchHHHhhccCCCcHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cccccchhh
Q 002304 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL--SEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEHLNLEDK 377 (939)
Q Consensus 301 s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~--s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~i~l~E~ 377 (939)
+...+.....|.|-.+++|.+|+..|..+.-. ...-..+.++-+..|.+++++-+|+..+.++..++. .|.-...++
T Consensus 517 ~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~ 596 (759)
T KOG0211|consen 517 EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCED 596 (759)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHH
Confidence 22222334457777778888888777665421 122235566777777777777888877777776664 344445567
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 378 HMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 378 aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
.+|.+..+..|..++||-.+++.|..+
T Consensus 597 Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 597 LLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred HhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 778888888888888887777766654
No 33
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=5.3e-05 Score=94.22 Aligned_cols=261 Identities=17% Similarity=0.165 Sum_probs=157.7
Q ss_pred HHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhh
Q 002304 165 REAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMI 244 (939)
Q Consensus 165 RraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL 244 (939)
-+.|..+|..+.-. . .+..+...+++.+.++|+..++.=|.+|+-+|+.++..-.. .-....+.++..+++.|
T Consensus 326 ~~~A~~~lDrlA~~-L-~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~-----~m~~~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 326 YRAAEQALDRLALH-L-GGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSD-----VMIGNLPKILPIVLNGL 398 (1075)
T ss_pred HHHHHHHHHHHHhc-C-ChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHHHHhhc
Confidence 34555666554321 0 12245566899999999999999999999999999864211 11123467889999999
Q ss_pred cCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcH-HHHHHH
Q 002304 245 RDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFY-EVRKSA 322 (939)
Q Consensus 245 ~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~-eVR~aA 322 (939)
+|++++||++|..++|.|.. ..+++ .|+- .+...++++..++|... .|-..|
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~i-----qk~~---------------------~e~l~~aL~~~ld~~~~~rV~ahA 452 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEI-----QKKH---------------------HERLPPALIALLDSTQNVRVQAHA 452 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHH-----HHHH---------------------HHhccHHHHHHhcccCchHHHHHH
Confidence 99999999999999999953 44443 2221 23456688888887644 788888
Q ss_pred HHHHHhcccc-chhhHHHHHHHHHH-----HhcCCCHHHHHHHHHHHhhhhhcccccch---hhHHHHHHHhcCCCC---
Q 002304 323 CSSLGSLVIL-SEKFAGEALNLLVD-----MLNDDSVTVRLQALETMHIMVTCEHLNLE---DKHMHMFLGTLVDNS--- 390 (939)
Q Consensus 323 aeALGkL~~~-s~~fA~~ALd~Lvd-----mLnDe~~~VRl~Aa~ALgkI~~~~~i~l~---E~aL~~LL~~L~D~~--- 390 (939)
+-+|=.+... .+.....-+|.|+. +++.+.+.||-.++.|+|-++......+. +..+|-+...|...+
T Consensus 453 a~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d 532 (1075)
T KOG2171|consen 453 AAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKD 532 (1075)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchh
Confidence 8888544321 11222334555544 66788999999999999999863333332 456666666665444
Q ss_pred -HHHHHHHHHHHhhccCCc-hhHH----HHHHHHHHHhhcc--Cccc--hH---HHH-HHHHHhhcccccchHHHHHHHh
Q 002304 391 -ELVRCAARKILKLVKTPK-LEFF----RLFIDGLLENLKI--YPQD--EA---DVF-SVLFFIGRSHGNFAACIIKEVC 456 (939)
Q Consensus 391 -~dVR~aA~~aLg~i~l~~-~~~l----~~~l~~LL~~L~~--~peD--r~---~I~-~aL~~LG~~H~~lv~~lv~~Ll 456 (939)
.++|-..-+-++.++..- .+.| +.+++-++..-.. ..+| +. ..| +..+-+|..-..|..-+++-++
T Consensus 533 ~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~ 612 (1075)
T KOG2171|consen 533 LRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLL 612 (1075)
T ss_pred hHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHH
Confidence 555544333333333221 1112 2233333332111 1112 11 234 3444457654555556777777
Q ss_pred hh
Q 002304 457 QE 458 (939)
Q Consensus 457 ~~ 458 (939)
.+
T Consensus 613 ~t 614 (1075)
T KOG2171|consen 613 KT 614 (1075)
T ss_pred Hh
Confidence 75
No 34
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00053 Score=82.09 Aligned_cols=342 Identities=18% Similarity=0.225 Sum_probs=195.8
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
|-..+..++.+.-|+||+-|+-.|-++.-. +..+...++|.+.+-|.|+|++|-.+||.++.+++.- +..+
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLk----YPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArK-----nPkn 215 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLK----YPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARK-----NPQN 215 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHh----hhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh-----CCcc
Confidence 345667799999999999999999987643 1234567899999999999999999999999999863 1121
Q ss_pred ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhh-------hhhccccchh--hhhhh
Q 002304 229 RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKE-------KKFHSLGAAE--CFEIS 299 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~-------kr~~~~l~~d--~~~l~ 299 (939)
=..+...-|.-+.. .+-+|.. -.-.+.+|.+.. +++-|.||++..+-+ .....+.-+- .+++
T Consensus 216 yL~LAP~ffklltt--SsNNWmL-IKiiKLF~aLtp-----lEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~- 286 (877)
T KOG1059|consen 216 YLQLAPLFYKLLVT--SSNNWVL-IKLLKLFAALTP-----LEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSM- 286 (877)
T ss_pred cccccHHHHHHHhc--cCCCeeh-HHHHHHHhhccc-----cCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehh-
Confidence 22333322222111 2333432 223455555543 334445554432211 0000000000 0011
Q ss_pred hhc----------chHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhc
Q 002304 300 ASA----------AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC 369 (939)
Q Consensus 300 ~s~----------a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~ 369 (939)
.+| ++.=+--.++|.++..|.-+.-++++++...|.+...--|.++..|.|.++.+|+.|+.-|..|.+.
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 111 2223334578999999999999999999989988888889999999999999999999999999864
Q ss_pred ccccchhhHHHHHHHhcCCCCH-HHHHHHHH-HHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHh-hccccc
Q 002304 370 EHLNLEDKHMHMFLGTLVDNSE-LVRCAARK-ILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFI-GRSHGN 446 (939)
Q Consensus 370 ~~i~l~E~aL~~LL~~L~D~~~-dVR~aA~~-aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~L-G~~H~~ 446 (939)
.++ .+.+..|..-+.+.+. ..|..+.. +++-|.-.+-. -+.+.+.|- ++.-=|.+| |.+|+.
T Consensus 367 kNl---~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~--------~ItdFEWYl----sVlveLa~l~~~~~G~ 431 (877)
T KOG1059|consen 367 KNL---MEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQ--------YITDFEWYL----SVLVELARLEGTRHGS 431 (877)
T ss_pred hhH---HHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhh--------hhhhHHHHH----HHHHHHHhccccchhh
Confidence 332 3577888887777666 77755432 33332211110 011111111 122223333 455655
Q ss_pred chHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhccc-cCcCCCC-CCChhhhhhhHhhhchhhhhhhhhhhhhhhh
Q 002304 447 FAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPL-SCEQNVR-SIPPQIFSYAVTLLGRISYALSDVMNQHSLM 524 (939)
Q Consensus 447 lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~-s~~~~~~-~ip~~~fsh~~~~~~k~y~~l~D~m~~~sl~ 524 (939)
.+. .++.+..=..- + =.+.-++.++..+.-+. .-...++ .|++ +.+-+....|-+..++++- +++|-
T Consensus 432 ~I~---eQi~Dv~iRV~----~-iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~e-VL~AaaWi~GEyse~ven~--~~~le 500 (877)
T KOG1059|consen 432 LIA---EQIIDVAIRVP----S-IRPFSVSQMSALLDDPLLAGSAQINSQLCE-VLYAAAWILGEYSEFVENP--NDTLE 500 (877)
T ss_pred HHH---HHHHHHheech----h-hhHhHHHHHHHHHhchhhccchhhccchhH-HHHHHHHHHHHHHHHhhCH--HHHHH
Confidence 543 33433200000 0 01222333333322110 0011122 3888 6677888899999999983 46667
Q ss_pred hhhcccc-CCC
Q 002304 525 AYLSLCS-RLS 534 (939)
Q Consensus 525 ~~l~~~~-~~~ 534 (939)
+-|.|.. -+|
T Consensus 501 amlrpr~~~lp 511 (877)
T KOG1059|consen 501 AMLRPRSDLLP 511 (877)
T ss_pred HHhcCccccCc
Confidence 7555553 455
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.27 E-value=7.2e-06 Score=75.55 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCc
Q 002304 236 VFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEF 315 (939)
Q Consensus 236 af~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~ 315 (939)
.+..|+..+.|.+|.+|..|+.+|+.+...+++..... ...++++.++..|.|++
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-------------------------~~~~~i~~l~~~l~~~~ 62 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAV-------------------------VEAGGLPALVQLLKSED 62 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHH-------------------------HHCCChHHHHHHHhCCC
Confidence 56789999999999999999999999976544332211 24578899999999999
Q ss_pred HHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 316 YEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 316 ~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
+.||..|+.+|+++....+... ...++.|+..+++++..||..|+.+|+.|.
T Consensus 63 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 63 EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999999999999987554322 125788888888888899999888888764
No 36
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.22 E-value=5.5e-05 Score=84.02 Aligned_cols=257 Identities=17% Similarity=0.129 Sum_probs=176.3
Q ss_pred hhhhhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhcccccccccc--hhHHHHHHHhhcCCCHHHHHHHHHHHh
Q 002304 184 VDLIQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCS--DVVFIQLCSMIRDMRMEVRVEAFNALG 260 (939)
Q Consensus 184 ~~l~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lv--ddaf~aLc~aL~D~s~~VR~~AA~ALG 260 (939)
..+..++.|++++++ +...+....+|+=+|-.++.-. ..+.+.+ ..|+.-++++|.+.+..||..|.+|||
T Consensus 109 ~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt------t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALG 182 (526)
T COG5064 109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT------TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALG 182 (526)
T ss_pred hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc------ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhc
Confidence 334456889999999 6777788888888887665421 1122222 468889999999999999999999999
Q ss_pred cccCCcHH---HHHHHh-hHHHhhhhhh-------hhh---------ccccchhhhhhhhhcchHHHhhccCCCcHHHHH
Q 002304 261 KVGMISEI---VLLQTL-SKKVLGATKE-------KKF---------HSLGAAECFEISASAAAGTFVHGFEDEFYEVRK 320 (939)
Q Consensus 261 ~i~~vs~~---~LlqtL-~kklm~~lk~-------kr~---------~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~ 320 (939)
++...|+. +++|+= -..++.-+.. .|. +++.....++- -+.+++.|..++--.+.+|=.
T Consensus 183 NiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~-isqalpiL~KLiys~D~evlv 261 (526)
T COG5064 183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSN-ISQALPILAKLIYSRDPEVLV 261 (526)
T ss_pred cccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHH-HHHHHHHHHHHHhhcCHHHHH
Confidence 99766643 222210 0001110000 000 00000011222 245788888888888889999
Q ss_pred HHHHHHHhccccchhhHHH-----HHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc----cccchhhHHHHHHHhcCCCCH
Q 002304 321 SACSSLGSLVILSEKFAGE-----ALNLLVDMLNDDSVTVRLQALETMHIMVTCE----HLNLEDKHMHMFLGTLVDNSE 391 (939)
Q Consensus 321 aAaeALGkL~~~s~~fA~~-----ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~----~i~l~E~aL~~LL~~L~D~~~ 391 (939)
-|+-|+.-+.+...+-... ..+.|+.+|..++..|..-|++++|+|.... .+-+.--++++|..+|..+-.
T Consensus 262 DA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke 341 (526)
T COG5064 262 DACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE 341 (526)
T ss_pred HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh
Confidence 9999999988755443222 2356999999999999999999999997511 222334578889999999999
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHH-----HHHhhccCc-cchHHHHHHHHHh---hcccccc
Q 002304 392 LVRCAARKILKLVKTPKLEFFRLFIDG-----LLENLKIYP-QDEADVFSVLFFI---GRSHGNF 447 (939)
Q Consensus 392 dVR~aA~~aLg~i~l~~~~~l~~~l~~-----LL~~L~~~p-eDr~~I~~aL~~L---G~~H~~l 447 (939)
.+|++|...+..|--.+.+-++.+++. |+..|.-+. .-+|.+.||+.+. |.+.|+.
T Consensus 342 ~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ 406 (526)
T COG5064 342 NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDI 406 (526)
T ss_pred hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchH
Confidence 999999999999988899988888775 444444332 2388899999888 4444544
No 37
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.13 E-value=8e-06 Score=85.56 Aligned_cols=182 Identities=18% Similarity=0.162 Sum_probs=116.2
Q ss_pred HhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhh
Q 002304 196 ELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLS 275 (939)
Q Consensus 196 ~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~ 275 (939)
..-.|.+...|.+|+.-|..+.....+......-+..+.+....++..++|....|-..|...++.+... +.
T Consensus 14 ~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~--------l~ 85 (228)
T PF12348_consen 14 KKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ--------LG 85 (228)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH--------HG
T ss_pred ccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------Hh
Confidence 3458999999999999998875432000000000111123345788899999999999999999887421 11
Q ss_pred HHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHH-HHHHHHHhcCCCHH
Q 002304 276 KKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEA-LNLLVDMLNDDSVT 354 (939)
Q Consensus 276 kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~A-Ld~LvdmLnDe~~~ 354 (939)
+ .|.......++.++..+.|....||.+|..+|..+....+ +..+. ++.+....++.++.
T Consensus 86 ~------------------~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~ 146 (228)
T PF12348_consen 86 S------------------HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQ 146 (228)
T ss_dssp G------------------GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HH
T ss_pred H------------------hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHH
Confidence 1 0111234567899999999999999999999988876443 23456 78899999999999
Q ss_pred HHHHHHHHHhhhhhccc---ccc-----hhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 355 VRLQALETMHIMVTCEH---LNL-----EDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 355 VRl~Aa~ALgkI~~~~~---i~l-----~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
||..+++.|..+-.... ..+ -+..++.+...+.|.+++||+++..++..+
T Consensus 147 vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 147 VREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 99999999988754222 111 146889999999999999999999988775
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.10 E-value=1.1e-05 Score=74.41 Aligned_cols=105 Identities=17% Similarity=0.126 Sum_probs=85.8
Q ss_pred hhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccc--
Q 002304 300 ASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHL-- 372 (939)
Q Consensus 300 ~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i-- 372 (939)
..+.++.++..|.|.++++|..|+.+|+.++..+++.. ..+++.|+++++|+++.||..|+.+|++|+..+..
T Consensus 5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 45688899999999999999999999999997544432 26789999999999999999999999999853211
Q ss_pred --cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 373 --NLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 373 --~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
......++.++..|.+.+.++|+.+..+|..+
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 12234688999999999999999888877653
No 39
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00024 Score=85.42 Aligned_cols=336 Identities=13% Similarity=0.093 Sum_probs=229.4
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCch-HHHHHHHHHHHhcchhhhhcc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDC-VRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~-VR~aAV~aLg~lg~~~~~~~~ 225 (939)
+.+-..++..+..+.|+++..|...++.+..-.. +...++++.+.+.....++++. |+..+.++||.+-+.+.+.
T Consensus 89 eqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~El--P~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-- 164 (859)
T KOG1241|consen 89 EQVKNNILRTLGSPEPRRPSSAAQCVAAIACIEL--PQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-- 164 (859)
T ss_pred HHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhC--chhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--
Confidence 3444566678999999999999999999975443 5567777778888888899888 9999999999998765332
Q ss_pred cccccccchhHHHHHHHhh--cCCCHHHHHHHHHHHhcc----c----CCc---------------HH-----HHHHHhh
Q 002304 226 EKNRIDCSDVVFIQLCSMI--RDMRMEVRVEAFNALGKV----G----MIS---------------EI-----VLLQTLS 275 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL--~D~s~~VR~~AA~ALG~i----~----~vs---------------~~-----~LlqtL~ 275 (939)
......++++.++|+-. +-++..||-+|-++|-.- + +.. ++ .-.+.|-
T Consensus 165 --vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Clv 242 (859)
T KOG1241|consen 165 --VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLV 242 (859)
T ss_pred --HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHH
Confidence 11223467888888865 477888888888888541 1 110 00 1112222
Q ss_pred HHHh-------------------hhhhhhhh--cccc-------chhh---------------------hhh-hhhcchH
Q 002304 276 KKVL-------------------GATKEKKF--HSLG-------AAEC---------------------FEI-SASAAAG 305 (939)
Q Consensus 276 kklm-------------------~~lk~kr~--~~~l-------~~d~---------------------~~l-~~s~a~g 305 (939)
|-++ .++|.... .-|. ..|. |.. --+.++|
T Consensus 243 kIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P 322 (859)
T KOG1241|consen 243 KIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVP 322 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhH
Confidence 2110 01110000 0000 0010 000 0024566
Q ss_pred HHhhccC-------CCcHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc----ccc
Q 002304 306 TFVHGFE-------DEFYEVRKSACSSLGSLVIL-SEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCE----HLN 373 (939)
Q Consensus 306 aLI~~Le-------DE~~eVR~aAaeALGkL~~~-s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~----~i~ 373 (939)
-++..|. |++|.+-++|--=|+-.+.- ...+....++|+-.-+..++|.=|-.|+-|+|-+=... -..
T Consensus 323 ~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~ 402 (859)
T KOG1241|consen 323 VLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTP 402 (859)
T ss_pred HHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhH
Confidence 6666652 45788888888777665532 22344678899999999999999999999999886411 111
Q ss_pred chhhHHHHHHHhcCCCCHHHHHHHHHHHhhccC------CchhHHHHHHHHHHHhhccCccchHHHHHHHHHhh------
Q 002304 374 LEDKHMHMFLGTLVDNSELVRCAARKILKLVKT------PKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIG------ 441 (939)
Q Consensus 374 l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l------~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG------ 441 (939)
+-.+++|.++.++.|++-.||.+++..||.+-. .+..-++..+..++.-|..-|..-..+.|++-.+.
T Consensus 403 iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 403 IVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred HHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHh
Confidence 335799999999999999999999999998642 23455677788899999999988777788877775
Q ss_pred --ccc-----ccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhccccC
Q 002304 442 --RSH-----GNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSC 488 (939)
Q Consensus 442 --~~H-----~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~s~ 488 (939)
.+| -.+.+.+|..|++..+..-.-+..+--..|-|.+-+|-+.+..+
T Consensus 483 ~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 483 AVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred ccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence 111 12668899999998666554677788899999999999988855
No 40
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.97 E-value=2.3e-05 Score=64.95 Aligned_cols=51 Identities=29% Similarity=0.326 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhccccchhh----HHHHHHHHHHHhcCCCHHHHHHHHHHHhhh
Q 002304 316 YEVRKSACSSLGSLVILSEKF----AGEALNLLVDMLNDDSVTVRLQALETMHIM 366 (939)
Q Consensus 316 ~eVR~aAaeALGkL~~~s~~f----A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI 366 (939)
|.||.+|+.+||.+....++. ..++++.|+.+++|+++.||.+|+.|||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999887554443 467899999999999999999999999975
No 41
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.00024 Score=84.03 Aligned_cols=301 Identities=16% Similarity=0.172 Sum_probs=191.2
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
++..++.=..|..+.||.+|.+|...+...- +...+..+++.++..+.+....=.+++++.||.++......
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~---~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q----- 288 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCL---SAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ----- 288 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhc---CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH-----
Confidence 4445556677999999999999998876532 11345667888888887777778889999999888753111
Q ss_pred ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhh-hc----cccchhhh-hhhh--
Q 002304 229 RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKK-FH----SLGAAECF-EISA-- 300 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr-~~----~~l~~d~~-~l~~-- 300 (939)
-.....+++..|...|.|-.+.||.++.++|-+++.+-.+..+|.+.+.+++.+..-. .. ..+.+..| +-++
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~p 368 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAP 368 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecch
Confidence 0012256778899999999999999999999999998777777888888777654311 11 11111110 0001
Q ss_pred --hcchHHHhhccCCCcHHHHHHHHHHHHhccccc---h---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-ccc
Q 002304 301 --SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS---E---KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEH 371 (939)
Q Consensus 301 --s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s---~---~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~ 371 (939)
+-.++-+.++|.+-....++.++...+.+...- . .|....+|.|-..+.|..++||--|++|||.+-. .|.
T Consensus 369 sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 369 SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 124567889999999999999988887766421 1 2457788999999999999999999999977653 233
Q ss_pred ccchhhHHHHHHHhcCCCCHHH-HHHHHHHHhh-ccCCchhHHHHHHHHHHHhhccCcc---chHHHHHHHHHh----hc
Q 002304 372 LNLEDKHMHMFLGTLVDNSELV-RCAARKILKL-VKTPKLEFFRLFIDGLLENLKIYPQ---DEADVFSVLFFI----GR 442 (939)
Q Consensus 372 i~l~E~aL~~LL~~L~D~~~dV-R~aA~~aLg~-i~l~~~~~l~~~l~~LL~~L~~~pe---Dr~~I~~aL~~L----G~ 442 (939)
..+ ++..|.+.+.+.++..++ |..++..|+. ++-...+-....+...+.+....-. .+...-+.+.-+ |.
T Consensus 449 ~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~ 527 (569)
T KOG1242|consen 449 VSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGF 527 (569)
T ss_pred hcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhH
Confidence 334 567778888887666554 3333333332 2222223333344444443332211 222222222222 34
Q ss_pred ccccchHHHHHHHhhh
Q 002304 443 SHGNFAACIIKEVCQE 458 (939)
Q Consensus 443 ~H~~lv~~lv~~Ll~~ 458 (939)
.|..++..+++.+++.
T Consensus 528 ~~~~yi~~i~~~~~k~ 543 (569)
T KOG1242|consen 528 QFQPYIHEILDEFLKG 543 (569)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 4445555566666554
No 42
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.90 E-value=0.0003 Score=72.16 Aligned_cols=98 Identities=21% Similarity=0.196 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHH
Q 002304 161 YPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQL 240 (939)
Q Consensus 161 Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aL 240 (939)
||.||..|+.+||++.-+-. .+++...+.+...|+|+++.||..|+..|..+-.. .-+.+-+..|..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~--------d~ik~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE--------DMIKVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--------CceeehhhhhHHH
Confidence 68999999999999987643 56667788899999999999999999999987531 1233445667889
Q ss_pred HHhhcCCCHHHHHHHHHHHhcccCC-cHHHH
Q 002304 241 CSMIRDMRMEVRVEAFNALGKVGMI-SEIVL 270 (939)
Q Consensus 241 c~aL~D~s~~VR~~AA~ALG~i~~v-s~~~L 270 (939)
..++.|+++.||..|...|.++... .++.+
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccchHH
Confidence 9999999999999999999998543 44443
No 43
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00082 Score=79.66 Aligned_cols=267 Identities=19% Similarity=0.130 Sum_probs=176.4
Q ss_pred HhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHH
Q 002304 135 LLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVS 214 (939)
Q Consensus 135 ~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg 214 (939)
+.+++.+---+...+++.+.+-++-|.+.||++....|..+.-... ......+.+.+.++++-.+-.=|..|+..++
T Consensus 83 ~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~---~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~a 159 (569)
T KOG1242|consen 83 LAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK---GLSGEYVLELLLELLTSTKIAERAGAAYGLA 159 (569)
T ss_pred HHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh---ccCHHHHHHHHHHHhccccHHHHhhhhHHHH
Confidence 3444555556888999999999999999999999999987653221 1122446777888888777788888888887
Q ss_pred HhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHH-HHHHH----hcccCCcHHHHHHHhhHHHhhhhhhhhhcc
Q 002304 215 EWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVE-AFNAL----GKVGMISEIVLLQTLSKKVLGATKEKKFHS 289 (939)
Q Consensus 215 ~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~-AA~AL----G~i~~vs~~~LlqtL~kklm~~lk~kr~~~ 289 (939)
.+-+-......+. ...+..|-.++.|....-|.+ +.-++ +.+|..-+.++.+
T Consensus 160 g~v~g~~i~~~~~------~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~----------------- 216 (569)
T KOG1242|consen 160 GLVNGLGIESLKE------FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP----------------- 216 (569)
T ss_pred HHHcCcHHhhhhh------hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh-----------------
Confidence 7654322111111 346778889999998888876 22221 2223222223322
Q ss_pred ccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 290 LGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-GEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 290 ~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
..+.+.....|....||.+|.++.-.+-..-+..+ ...++.++..+.+..|.=..++++.||-++.
T Consensus 217 -------------~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 217 -------------ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred -------------hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 23456667788888999998888866554333344 3446777777777788888889999988875
Q ss_pred cccccch---hhHHHHHHHhcCCCCHHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcc
Q 002304 369 CEHLNLE---DKHMHMFLGTLVDNSELVRCAARKILKLVK-TPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRS 443 (939)
Q Consensus 369 ~~~i~l~---E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~-l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~ 443 (939)
+....+. .+.+|.+.+.|-|..++||+++.+++...+ .-+-..++..+..|++++.+ | ....-.|+.-||+.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~d-p--~~~~~e~~~~L~~t 359 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALAD-P--SCYTPECLDSLGAT 359 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcC-c--ccchHHHHHhhcce
Confidence 3322211 367888899999999999999988776643 22333467777777776652 2 22446666777654
No 44
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.87 E-value=0.00024 Score=88.59 Aligned_cols=229 Identities=19% Similarity=0.170 Sum_probs=156.3
Q ss_pred CChhhHHH----HHHhhhcCCCHHHHHHHHHHHHhhhhccc-c---cchhhhhhHHHHHHHhhCC-CCchHHHHHHHHHH
Q 002304 144 VRPHLLFT----VCLGLTKDPYPYVREAALNGLVCLLKHVV-F---EDVDLIQGCCCRAVELLRD-HEDCVRCAAVRVVS 214 (939)
Q Consensus 144 v~~~~L~~----~L~~ll~D~Dp~VRraAl~AL~~L~~~~~-~---~~~~l~~~i~~~l~~lL~D-dd~~VR~aAV~aLg 214 (939)
+.++..++ -+..++.|+++.||.+|+++|.++-.... + ...-+++-++|.+..++.| ....||.+=+.-|+
T Consensus 454 i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla 533 (1431)
T KOG1240|consen 454 IDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLA 533 (1431)
T ss_pred cchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHH
Confidence 34444444 45568999999999999999998765211 0 1123466789999999999 89999999999999
Q ss_pred Hhcchhh-------h------hccccc-----------ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHH
Q 002304 215 EWGKMLI-------A------CIDEKN-----------RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVL 270 (939)
Q Consensus 215 ~lg~~~~-------~------~~~~~~-----------~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~L 270 (939)
.++.... . .++.+. -..+...+-+....++.|+.+.||++--+.++.+...
T Consensus 534 ~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F----- 608 (1431)
T KOG1240|consen 534 QLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF----- 608 (1431)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH-----
Confidence 8886520 0 011111 0111122223455678899999999988887776420
Q ss_pred HHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcc----ccchhhHHHHHHHHHH
Q 002304 271 LQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLV----ILSEKFAGEALNLLVD 346 (939)
Q Consensus 271 lqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~----~~s~~fA~~ALd~Lvd 346 (939)
..| +| + +.-....++.-|.|.+|..|.+-.+++--++ ..+ ..+-.+|.|..
T Consensus 609 ---FGk-------~k------s-------ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q 663 (1431)
T KOG1240|consen 609 ---FGK-------EK------S-------NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQ 663 (1431)
T ss_pred ---hhh-------cc------c-------ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHH
Confidence 000 00 0 1223456888899999999999999995322 221 12457899999
Q ss_pred HhcCCCHHHHHHHHHHHhhhhhcccc---cchhhHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 347 MLNDDSVTVRLQALETMHIMVTCEHL---NLEDKHMHMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 347 mLnDe~~~VRl~Aa~ALgkI~~~~~i---~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
.|.|..+.|=.+|+.+|.-+-..|.+ .+ -+.++..+-.|-++|..||+++..++-.
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAVLGIIAA 722 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHHHHHHHH
Confidence 99999999999999998877643322 12 2466667778999999999998776543
No 45
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.84 E-value=4.3e-05 Score=63.25 Aligned_cols=55 Identities=25% Similarity=0.217 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHh
Q 002304 249 MEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGS 328 (939)
Q Consensus 249 ~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGk 328 (939)
|.||..|+++||++.....+.+... -+.+++.|+.+|+|++..||.+|+.+||+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~--------------------------~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY--------------------------LPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH--------------------------HHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH--------------------------HHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 8999999999999866555443322 24567889999999999999999999997
Q ss_pred c
Q 002304 329 L 329 (939)
Q Consensus 329 L 329 (939)
|
T Consensus 55 l 55 (55)
T PF13513_consen 55 L 55 (55)
T ss_dssp H
T ss_pred C
Confidence 5
No 46
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0011 Score=80.20 Aligned_cols=314 Identities=18% Similarity=0.133 Sum_probs=193.2
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
...+..+..=+.|++|++|.-|++.++.+.-+. +++-+...+.+.++|+++.||..|+-.+..+.+.-...
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~--- 155 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL--- 155 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhh---
Confidence 344456677899999999999999998776554 34556788999999999999999999998887631111
Q ss_pred ccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcH----HHHHHHhhHHHhhhhhhhhhc-------------c
Q 002304 227 KNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISE----IVLLQTLSKKVLGATKEKKFH-------------S 289 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~----~~LlqtL~kklm~~lk~kr~~-------------~ 289 (939)
--.......|-.++.|.++.|-..|-.+|.+|....+ -.+.+.+..+++.++.+-..- +
T Consensus 156 ----~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 156 ----VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVP 231 (734)
T ss_pred ----ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC
Confidence 0112345678889999999999999999999944221 122222333344333221110 0
Q ss_pred c------------------------cchhh-----h-------hhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc
Q 002304 290 L------------------------GAAEC-----F-------EISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS 333 (939)
Q Consensus 290 ~------------------------l~~d~-----~-------~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s 333 (939)
. +++.. . +..-....++++.+|.-+. ++---|..-++.+-...
T Consensus 232 ~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~ 310 (734)
T KOG1061|consen 232 KDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKR 310 (734)
T ss_pred CCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhC
Confidence 0 00000 0 0111223445555555444 66666666665555444
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHH
Q 002304 334 EKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFR 413 (939)
Q Consensus 334 ~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~ 413 (939)
|++-..=+-..-=-.||++ .|.+.=++.+-+++... .+. +.+.-+.+--.+-+.+.-+.+.+++|.+..--.+. +
T Consensus 311 p~~~~~~~~~Ff~kynDPi-YvK~eKleil~~la~~~--nl~-qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~ 385 (734)
T KOG1061|consen 311 PEILKVEIKVFFCKYNDPI-YVKLEKLEILIELANDA--NLA-QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-N 385 (734)
T ss_pred hHHHHhHhHeeeeecCCch-hhHHHHHHHHHHHhhHh--HHH-HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-h
Confidence 4321111111112234443 56777777777776421 122 24444444445666666666778888876544333 6
Q ss_pred HHHHHHHHhhc-cCccchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhccc
Q 002304 414 LFIDGLLENLK-IYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPL 486 (939)
Q Consensus 414 ~~l~~LL~~L~-~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~ 486 (939)
.++..||+.+. +-.-.-+.+-..+..|++.-|.-.+.++..+-..+ ..+++|...+.||-++..-.
T Consensus 386 ~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~-------~sl~epeak~amiWilg~y~ 452 (734)
T KOG1061|consen 386 DCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENL-------DSLQEPEAKAALIWILGEYA 452 (734)
T ss_pred hhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccc-------cccCChHHHHHHHHHHhhhh
Confidence 78888888776 21222445677888888888888888888887763 36788899999998777665
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.81 E-value=0.00026 Score=74.20 Aligned_cols=187 Identities=20% Similarity=0.222 Sum_probs=112.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHhcc--cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHH
Q 002304 240 LCSMIRDMRMEVRVEAFNALGKV--GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYE 317 (939)
Q Consensus 240 Lc~aL~D~s~~VR~~AA~ALG~i--~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~e 317 (939)
+...-+|.+|..|.+|...|..+ ++.+.+.... +...+ .....+++..+.|....
T Consensus 12 l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~-----~~~~l------------------~~~~~~i~~~l~d~Rs~ 68 (228)
T PF12348_consen 12 LEKKESESDWEERVEALQKLRSLIKGNAPEDFPPD-----FVECL------------------RQLLDAIIKQLSDLRSK 68 (228)
T ss_dssp HHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HH-----HHHHH------------------H---HHHHH-S-HH---
T ss_pred HhccCCccCHHHHHHHHHHHHHHHHcCCccccHHH-----HHHHH------------------HHhHHHHHHHHhhhHHH
Confidence 33345899999999999999887 3222211110 11111 13456888999999999
Q ss_pred HHHHHHHHHHhccc----cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhH-HHHHHHhcCCCCHH
Q 002304 318 VRKSACSSLGSLVI----LSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKH-MHMFLGTLVDNSEL 392 (939)
Q Consensus 318 VR~aAaeALGkL~~----~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~a-L~~LL~~L~D~~~d 392 (939)
|-+.|+..++.++. .-..++...++.|++.+.|....||..|.++|..|.. ........ ++.+...+++.++.
T Consensus 69 v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~--~~~~~~~~~~~~l~~~~~~Kn~~ 146 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIE--SCSYSPKILLEILSQGLKSKNPQ 146 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHT--TS-H--HHHHHHHHHHTT-S-HH
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH--HCCcHHHHHHHHHHHHHhCCCHH
Confidence 99999998877663 2333457789999999999999999999999999984 33322345 78888899999999
Q ss_pred HHHHHHHHHhhc-c-CC-------chhHHHHHHHHHHHhh-ccCccchHHHHHHHHHhhcccccchHHH
Q 002304 393 VRCAARKILKLV-K-TP-------KLEFFRLFIDGLLENL-KIYPQDEADVFSVLFFIGRSHGNFAACI 451 (939)
Q Consensus 393 VR~aA~~aLg~i-~-l~-------~~~~l~~~l~~LL~~L-~~~peDr~~I~~aL~~LG~~H~~lv~~l 451 (939)
||..+...+..+ . .+ ....+..++..+...+ +..|+.|+.+.+++..+-+..|+-...+
T Consensus 147 vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 147 VREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp HHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred HHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccc
Confidence 999998877664 2 22 1111233444444444 3456779999999988866555555333
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0013 Score=79.55 Aligned_cols=264 Identities=14% Similarity=0.059 Sum_probs=162.2
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
-..+++...+-....++.|++-.--=|.+..+....+ .+ . -...+.+.|.|+++.+|..|+++|..+--..
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--AL-L-SIntfQk~L~DpN~LiRasALRvlSsIRvp~----- 139 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--AL-L-SINTFQKALKDPNQLIRASALRVLSSIRVPM----- 139 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc--ee-e-eHHHHHhhhcCCcHHHHHHHHHHHHhcchhh-----
Confidence 4567777788888889999998888888887654311 11 1 1367899999999999999999998765332
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchH
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAG 305 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~g 305 (939)
++.-++-++-++.+|++++||+.||.|+-++-...++.=.|.+ +
T Consensus 140 ------IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~------------------------------e 183 (968)
T KOG1060|consen 140 ------IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE------------------------------E 183 (968)
T ss_pred ------HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH------------------------------H
Confidence 1234667888999999999999999999998665433211111 1
Q ss_pred HHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhc----------------
Q 002304 306 TFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC---------------- 369 (939)
Q Consensus 306 aLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~---------------- 369 (939)
.+-.+|.|...-|=-+|+-|.-..-...-++.++-.-.|-..+-|-++.=..-+|+.|.+-+-.
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~ 263 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG 263 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc
Confidence 1111233333333333333333322222222333344444444444444444444444443310
Q ss_pred -------------ccccchhhHHHHHH----HhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHH
Q 002304 370 -------------EHLNLEDKHMHMFL----GTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEAD 432 (939)
Q Consensus 370 -------------~~i~l~E~aL~~LL----~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~ 432 (939)
+.... +.-+..|+ -+|...++-|--|++.++=.+ ........+++.|+..|...++.+..
T Consensus 264 ~~~~~~~~~~~~~~P~~~-d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~l--AP~~~~~~i~kaLvrLLrs~~~vqyv 340 (968)
T KOG1060|consen 264 RSCNLKDKYNEIRTPYVN-DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHL--APKNQVTKIAKALVRLLRSNREVQYV 340 (968)
T ss_pred ccccccccccccCCCccc-CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhh--CCHHHHHHHHHHHHHHHhcCCcchhh
Confidence 11111 12233333 356677888887777766553 34445566788888888888888888
Q ss_pred HHHHHHHhhcccccchHHHHHHHhh
Q 002304 433 VFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 433 I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
+..++..+..+.|.+.+|-.+.++=
T Consensus 341 vL~nIa~~s~~~~~lF~P~lKsFfv 365 (968)
T KOG1060|consen 341 VLQNIATISIKRPTLFEPHLKSFFV 365 (968)
T ss_pred hHHHHHHHHhcchhhhhhhhhceEe
Confidence 8888888888778888776666543
No 49
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.0013 Score=80.61 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=93.5
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhh-HHHH
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDK-HMHM 381 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~-aL~~ 381 (939)
++..|.+-|+|++.++|..|+..||.+. -+++...+++++.+.++|+...||..|+-|++++=..++--..+. ....
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~ 170 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLR--VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI 170 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence 6889999999999999999999999999 467888999999999999999999999999999864332223333 6677
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHh
Q 002304 382 FLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLEN 422 (939)
Q Consensus 382 LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~ 422 (939)
+..++.|.+|.|-.+|-.+|..+.-....+.-..+...+++
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~ 211 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQ 211 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhh
Confidence 78888899999999998888887654344433334444443
No 50
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.76 E-value=0.0011 Score=72.20 Aligned_cols=188 Identities=15% Similarity=0.126 Sum_probs=132.1
Q ss_pred CChhhHHHHHHhhhc-CCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhh
Q 002304 144 VRPHLLFTVCLGLTK-DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 144 v~~~~L~~~L~~ll~-D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~ 222 (939)
+.+..+-. +..+++ ..||.+++.|+.+|+....-...-+.---.+..+.+..+|.|+++.||..|+.+|.-++....
T Consensus 9 l~~~~l~~-Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQK-LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHH-HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 55566644 444555 679999999999999875432100000012346788999999999999999999997765321
Q ss_pred hcccccccccchhHHHHHHHhhc--CCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhh
Q 002304 223 CIDEKNRIDCSDVVFIQLCSMIR--DMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA 300 (939)
Q Consensus 223 ~~~~~~~i~lvddaf~aLc~aL~--D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~ 300 (939)
....+...+..+|..+- ..+..|..++-++|..|.- ..+. .. + +
T Consensus 87 ------n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~-~~-----~--------------------l- 132 (254)
T PF04826_consen 87 ------NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDY-HH-----M--------------------L- 132 (254)
T ss_pred ------hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-Ccch-hh-----h--------------------H-
Confidence 11123456778888543 3477999999999999952 2211 00 0 1
Q ss_pred hcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHhhhhh
Q 002304 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDD-SVTVRLQALETMHIMVT 368 (939)
Q Consensus 301 s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe-~~~VRl~Aa~ALgkI~~ 368 (939)
...++.|++.|.-.+..+|..+...|..|+. +|..+ .+++..++.+|+.+ ..++-..++.-..+|..
T Consensus 133 ~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 133 ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 2246678888888888999999999999986 45543 56788899999986 78999999999998864
No 51
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0021 Score=77.56 Aligned_cols=279 Identities=15% Similarity=0.156 Sum_probs=176.6
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccc-ccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhh---
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVV-FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLI--- 221 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~-~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~--- 221 (939)
..-++...-+..+.||..||.+|+..|.+|..--. +.....-+.++..-+.+.+.+++.|-+.|++--..+-+.-+
T Consensus 215 rn~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~ 294 (859)
T KOG1241|consen 215 RNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLA 294 (859)
T ss_pred hceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788999999999999999999876311 11123334577777889999999998888875442222110
Q ss_pred -hhcccccccccc-----------hhHHHHHHHhh-------cCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhh
Q 002304 222 -ACIDEKNRIDCS-----------DVVFIQLCSMI-------RDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGA 281 (939)
Q Consensus 222 -~~~~~~~~i~lv-----------ddaf~aLc~aL-------~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~ 281 (939)
...+. .+..+. .+++.-|...| +|.+|.+-++|.-=|+-+.. +..+++
T Consensus 295 ~e~~e~-~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv----------- 362 (859)
T KOG1241|consen 295 IEYGEA-VDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV----------- 362 (859)
T ss_pred HHHHHH-hhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-----------
Confidence 00000 000111 12333344433 25668888777776665532 122221
Q ss_pred hhhhhhccccchhhhhhhhhcchHHHhh-ccCCCcHHHHHHHHHHHHhcccc-ch----hhHHHHHHHHHHHhcCCCHHH
Q 002304 282 TKEKKFHSLGAAECFEISASAAAGTFVH-GFEDEFYEVRKSACSSLGSLVIL-SE----KFAGEALNLLVDMLNDDSVTV 355 (939)
Q Consensus 282 lk~kr~~~~l~~d~~~l~~s~a~gaLI~-~LeDE~~eVR~aAaeALGkL~~~-s~----~fA~~ALd~LvdmLnDe~~~V 355 (939)
+.+. +||. -++.++|.=|.+|+-|.|..-.. .+ .+...++|.++.++.|..-.|
T Consensus 363 -------------------~~Vl-~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~V 422 (859)
T KOG1241|consen 363 -------------------PHVL-PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWV 422 (859)
T ss_pred -------------------hhhH-HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhh
Confidence 1122 5665 89999999999999999987642 11 245789999999999999999
Q ss_pred HHHHHHHHhhhhhc-----ccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc-------------CCchhHHHHHHH
Q 002304 356 RLQALETMHIMVTC-----EHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVK-------------TPKLEFFRLFID 417 (939)
Q Consensus 356 Rl~Aa~ALgkI~~~-----~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~-------------l~~~~~l~~~l~ 417 (939)
|-.++.+||+|... .+....-..+..++.-|.|+ |.|-.++-+++-... .+...-++..+.
T Consensus 423 kdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~ 501 (859)
T KOG1241|consen 423 KDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIG 501 (859)
T ss_pred cchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHH
Confidence 99999999999851 11111123445666666665 444444444332111 111246777888
Q ss_pred HHHHhhccCc-cc---hHHHHHHHHHhhcccccchHHHHHHHhh
Q 002304 418 GLLENLKIYP-QD---EADVFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 418 ~LL~~L~~~p-eD---r~~I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
+|++.-++-. .+ |-++|+||..+-++.|+.+-+++-++..
T Consensus 502 ~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l 545 (859)
T KOG1241|consen 502 SLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTL 545 (859)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 8888545422 11 7889999999999888888777666644
No 52
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.65 E-value=0.0061 Score=75.14 Aligned_cols=264 Identities=17% Similarity=0.164 Sum_probs=171.1
Q ss_pred CCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHH-
Q 002304 200 DHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKK- 277 (939)
Q Consensus 200 Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kk- 277 (939)
-..+.+|.-|.-.||++|.....+ -..+.+.-+..+++-++..|+.+|+.|||.+.. -.+++|.-.|..-
T Consensus 830 ~s~~~ikvfa~LslGElgr~~~~s--------~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~ 901 (1233)
T KOG1824|consen 830 KSSDSIKVFALLSLGELGRRKDLS--------PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIE 901 (1233)
T ss_pred CCchhHHHHHHhhhhhhccCCCCC--------cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHh
Confidence 557788899999999999743111 114456678899999999999999999999943 3444443333211
Q ss_pred --------HhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhc
Q 002304 278 --------VLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLN 349 (939)
Q Consensus 278 --------lm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLn 349 (939)
++..+|+.-.. .+.+.+..-.....+-|..-.|-.+..+|.--+|-||+|....|+ ..+|.|-..+.
T Consensus 902 sqpk~QyLLLhSlkevi~~--~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe---sLlpkL~~~~~ 976 (1233)
T KOG1824|consen 902 SQPKRQYLLLHSLKEVIVS--ASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE---SLLPKLKLLLR 976 (1233)
T ss_pred cchHhHHHHHHHHHHHHHH--hccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH---HHHHHHHHHhc
Confidence 11122221000 000100000011223444555666778899999999999976664 67899999999
Q ss_pred CCCHHHHHHHHHHHhhhhhcccc---cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccC
Q 002304 350 DDSVTVRLQALETMHIMVTCEHL---NLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIY 426 (939)
Q Consensus 350 De~~~VRl~Aa~ALgkI~~~~~i---~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~ 426 (939)
.+...-|..++.|..-.-...+- .+...+...++.+++|++.+||+.|-.++.....+...++.-+++.||+.|=.-
T Consensus 977 S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 977 SEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred CCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 99999999999988754431111 123457778999999999999999999999988888888888888888854211
Q ss_pred -------------------ccc----hHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhh
Q 002304 427 -------------------PQD----EADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAIS 483 (939)
Q Consensus 427 -------------------peD----r~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~ 483 (939)
.+| |+.+|+|+.-|-.+- +-..-+.++++.+ |.+++|.-|+-.|...+=
T Consensus 1057 TkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdsc--ld~~dit~Fl~~~------~~GL~DhydiKmlt~l~l 1128 (1233)
T KOG1824|consen 1057 TKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSC--LDRLDITEFLNHV------EDGLEDHYDIKMLTFLML 1128 (1233)
T ss_pred hhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhh--hhhccHHHHHHHH------HhhcchhhHHHHHHHHHH
Confidence 122 777888887663221 1111134455543 336777766655544443
Q ss_pred c
Q 002304 484 V 484 (939)
Q Consensus 484 A 484 (939)
+
T Consensus 1129 ~ 1129 (1233)
T KOG1824|consen 1129 A 1129 (1233)
T ss_pred H
Confidence 3
No 53
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00016 Score=81.07 Aligned_cols=206 Identities=16% Similarity=0.135 Sum_probs=146.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhh----hcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLL----KHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~----~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
...+..+++++|+.+..+|-.+||.+. ..+.+. + ..+ +..++.-..-|.-.||..||..++.+...- +
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv--~-l~G-l~~Li~qmmtd~vevqcnaVgCitnLaT~d----~ 158 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIV--S-LLG-LDLLILQMMTDGVEVQCNAVGCITNLATFD----S 158 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEE--e-ccC-hHHHHHHhcCCCcEEEeeehhhhhhhhccc----c
Confidence 455667899999999999999999664 333321 1 112 233444344556678999999999887531 0
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchH
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAG 305 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~g 305 (939)
...++.. .-+++++.++-+-++-+||+.|-.+|-.|...-++- -.+...|.++
T Consensus 159 nk~kiA~-sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR--------------------------r~LV~aG~lp 211 (550)
T KOG4224|consen 159 NKVKIAR-SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR--------------------------RVLVHAGGLP 211 (550)
T ss_pred chhhhhh-ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh--------------------------hhhhccCCch
Confidence 0111111 236778888889999999999999999886422111 1134688999
Q ss_pred HHhhccCCCcHHHHHHHHHHHHhccccc---hhhH---HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc--ccc-chh
Q 002304 306 TFVHGFEDEFYEVRKSACSSLGSLVILS---EKFA---GEALNLLVDMLNDDSVTVRLQALETMHIMVTCE--HLN-LED 376 (939)
Q Consensus 306 aLI~~LeDE~~eVR~aAaeALGkL~~~s---~~fA---~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~--~i~-l~E 376 (939)
.||.+|.-.+.+||..+.-+++.++... .-++ .+.++.|++++.|.++.|+..|..||+.|+... ... ++.
T Consensus 212 vLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a 291 (550)
T KOG4224|consen 212 VLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA 291 (550)
T ss_pred hhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc
Confidence 9999999999999999999999988531 1122 357899999999999999999999999999521 111 223
Q ss_pred hHHHHHHHhcCCCC
Q 002304 377 KHMHMFLGTLVDNS 390 (939)
Q Consensus 377 ~aL~~LL~~L~D~~ 390 (939)
-.+|.++++|+|+.
T Consensus 292 g~lP~lv~Llqs~~ 305 (550)
T KOG4224|consen 292 GSLPLLVELLQSPM 305 (550)
T ss_pred CCchHHHHHHhCcc
Confidence 46788889997765
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0026 Score=77.30 Aligned_cols=293 Identities=16% Similarity=0.154 Sum_probs=160.8
Q ss_pred HhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccc
Q 002304 154 LGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCS 233 (939)
Q Consensus 154 ~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lv 233 (939)
..=+++++-.|--.|+.+||.++.+.. ..+++|.+.++|+..++.||..|+-++..+=... ..++
T Consensus 113 knDL~s~nq~vVglAL~alg~i~s~Em------ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~---------P~l~ 177 (866)
T KOG1062|consen 113 KNDLNSSNQYVVGLALCALGNICSPEM------ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV---------PDLV 177 (866)
T ss_pred HhhccCCCeeehHHHHHHhhccCCHHH------hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC---------chHH
Confidence 446778888899999999998887653 3456788888999999999999988877654311 1122
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHH--hhHHHhhhhhhhhhccccchhhhhhhhhc-chHHHhhc
Q 002304 234 DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQT--LSKKVLGATKEKKFHSLGAAECFEISASA-AAGTFVHG 310 (939)
Q Consensus 234 ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~Llqt--L~kklm~~lk~kr~~~~l~~d~~~l~~s~-a~gaLI~~ 310 (939)
..-+.+-..+|.|.+.-|=.+.-..+-+|...+++.+... +-..++..+|..-. ++ -.+.=+|+
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~-------------~~yspeydv~g 244 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTN-------------SGYSPEYDVHG 244 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-------------CCCCCccCccC
Confidence 2333455567778887777777777777755544433211 11112222222110 00 01122445
Q ss_pred cCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhc-----------------------CCCHHHHHHHHHHHhhhh
Q 002304 311 FEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLN-----------------------DDSVTVRLQALETMHIMV 367 (939)
Q Consensus 311 LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLn-----------------------De~~~VRl~Aa~ALgkI~ 367 (939)
..|+|-+||. .+-|+-+|...++.....-|.|.+.+. +++...|..|++.|||.-
T Consensus 245 i~dPFLQi~i--LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL 322 (866)
T KOG1062|consen 245 ISDPFLQIRI--LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFL 322 (866)
T ss_pred CCchHHHHHH--HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Confidence 5555555543 233333332222111111122222111 344455666666666553
Q ss_pred -------------------hcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHhhccCc
Q 002304 368 -------------------TCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV-KTPKLEFFRLFIDGLLENLKIYP 427 (939)
Q Consensus 368 -------------------~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i-~l~~~~~l~~~l~~LL~~L~~~p 427 (939)
..+..+. ..+-.+++++|+|+++-+|+.|-+++=.+ +-.++.. .++.|+.=|..-+
T Consensus 323 ~n~d~NirYvaLn~L~r~V~~d~~av-qrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~---mv~eLl~fL~~~d 398 (866)
T KOG1062|consen 323 LNRDNNIRYVALNMLLRVVQQDPTAV-QRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV---MVKELLEFLESSD 398 (866)
T ss_pred cCCccceeeeehhhHHhhhcCCcHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH---HHHHHHHHHHhcc
Confidence 2111122 24567899999999999999988876554 4444444 6888888777765
Q ss_pred cc-hHHHHHHHHHhhccc---ccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhccc
Q 002304 428 QD-EADVFSVLFFIGRSH---GNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPL 486 (939)
Q Consensus 428 eD-r~~I~~aL~~LG~~H---~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~ 486 (939)
+| +.++..-+..+..+- ..|--..+-+.++.... .+.|...-..++||-|++.
T Consensus 399 ~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~------~V~~dv~~nll~LIa~~~~ 455 (866)
T KOG1062|consen 399 EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGD------FVNDDVVNNLLRLIANAFQ 455 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccc------ccchhhHHHHHHHHhcCCc
Confidence 55 333333333332210 12333334444554344 3456667788888888755
No 55
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0047 Score=74.99 Aligned_cols=229 Identities=14% Similarity=0.119 Sum_probs=151.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNR 229 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~ 229 (939)
+..+.+-+.+..+.-|+.|++-...-..-|. + +.+.++.+++...=+|-.+....---|...+.. +
T Consensus 15 i~elks~l~s~~~~kr~~a~kkvIa~Mt~G~--D---vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~---------~ 80 (734)
T KOG1061|consen 15 IPELKSQLNSQSKEKRKDAVKKVIAYMTVGK--D---VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG---------K 80 (734)
T ss_pred chHHHHHhhhhhhhhHHHHHHHHHhcCccCc--c---hHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc---------C
Confidence 3444444467777888888877654433332 1 235678888888766666665555555555542 1
Q ss_pred cccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhh
Q 002304 230 IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVH 309 (939)
Q Consensus 230 i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~ 309 (939)
....--++.-++.=-.|++|.+|..|.+.+|.++-.. + ..-+++++..
T Consensus 81 P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-----------i---------------------~ey~~~Pl~~ 128 (734)
T KOG1061|consen 81 PDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-----------I---------------------TEYLCDPLLK 128 (734)
T ss_pred chHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-----------H---------------------HHHHHHHHHH
Confidence 2222334555666778999999999999999986311 0 2335778999
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc----cccchhhHHHHHH
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFA--GEALNLLVDMLNDDSVTVRLQALETMHIMVTCE----HLNLEDKHMHMFL 383 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA--~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~----~i~l~E~aL~~LL 383 (939)
+|.|+++.||+.|+-...++...+++.. ..-++.|-+++.|+++.|=..|..||..|.... ...+....+..++
T Consensus 129 ~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL 208 (734)
T KOG1061|consen 129 CLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLL 208 (734)
T ss_pred hccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHH
Confidence 9999999999999999999887776654 446899999999999999999999999998522 2334445666677
Q ss_pred HhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 002304 384 GTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLK 424 (939)
Q Consensus 384 ~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~ 424 (939)
.+|++-+..=|-.+-..+..-.-.+-...+..++.+.+.|.
T Consensus 209 ~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lq 249 (734)
T KOG1061|consen 209 EALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQ 249 (734)
T ss_pred HHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhc
Confidence 77766666666444444433332222333344444444443
No 56
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.54 E-value=0.001 Score=74.19 Aligned_cols=240 Identities=18% Similarity=0.112 Sum_probs=143.3
Q ss_pred HHHHHhhh-ccccC-----CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc-chhhhhhHHHHHHHhhCCCCc
Q 002304 131 VRLWLLRN-AERFN-----VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE-DVDLIQGCCCRAVELLRDHED 203 (939)
Q Consensus 131 ~~~~~~~~-~~~~~-----v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~~~l~~~i~~~l~~lL~Ddd~ 203 (939)
+..|-+-| |-+-. |=+...++.+..++-++...||..|+.|||.+..+...- +--+-.+.+..++.+|.....
T Consensus 134 EAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~ 213 (526)
T COG5064 134 EAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI 213 (526)
T ss_pred HHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc
Confidence 77899988 32111 123456789999999999999999999999998653211 111222345667777765444
Q ss_pred hH--HHHHHHHHHHhcchhhhhccccccccc--chhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHh
Q 002304 204 CV--RCAAVRVVSEWGKMLIACIDEKNRIDC--SDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVL 279 (939)
Q Consensus 204 ~V--R~aAV~aLg~lg~~~~~~~~~~~~i~l--vddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm 279 (939)
.+ =+.|-=.|..+-.-- +....| +..++.-|..++.-.++.|=.-|.+|+.-+.+.+.+.+...+
T Consensus 214 ~ismlRn~TWtLSNlcRGk------nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avl----- 282 (526)
T COG5064 214 HISMLRNATWTLSNLCRGK------NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVL----- 282 (526)
T ss_pred hHHHHHHhHHHHHHhhCCC------CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHH-----
Confidence 22 122333333322110 111122 245788899999999999999999999999888877655444
Q ss_pred hhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchh----h-HHHHHHHHHHHhcCCCHH
Q 002304 280 GATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEK----F-AGEALNLLVDMLNDDSVT 354 (939)
Q Consensus 280 ~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~----f-A~~ALd~LvdmLnDe~~~ 354 (939)
+.+..+-|+.+|..|...|..-|..++|.+...+.. + ---+++++--+|...-+.
T Consensus 283 --------------------d~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~ 342 (526)
T COG5064 283 --------------------DVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKEN 342 (526)
T ss_pred --------------------hcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhh
Confidence 444455566666666666666666666665532211 0 012445555556666666
Q ss_pred HHHHHHHHHhhhhhccc-----ccchhhHHHHHHHhcCCCCHHHHHHHHHHHh
Q 002304 355 VRLQALETMHIMVTCEH-----LNLEDKHMHMFLGTLVDNSELVRCAARKILK 402 (939)
Q Consensus 355 VRl~Aa~ALgkI~~~~~-----i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg 402 (939)
+|..|-.++.+|-. |+ ..+.....|+|+.+|.-.+..+|++|..|..
T Consensus 343 irKEaCWTiSNITA-Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAis 394 (526)
T COG5064 343 IRKEACWTISNITA-GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAIS 394 (526)
T ss_pred hhhhhheeeccccc-CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666543 11 1122344566666666666666666666553
No 57
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0059 Score=73.82 Aligned_cols=334 Identities=16% Similarity=0.104 Sum_probs=207.6
Q ss_pred HHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccccccc
Q 002304 153 CLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDC 232 (939)
Q Consensus 153 L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~l 232 (939)
+.+=++||+.+||-.-++=|.++.++. +++.++|...+-|+.....||+.|+-+++.+=... -.+
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckLkE~E------Llepl~p~IracleHrhsYVRrNAilaifsIyk~~---------~~L 168 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKLKEPE------LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---------EHL 168 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhcCcHH------HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---------hhh
Confidence 356789999999999999999998664 45678999999999999999999999988654311 012
Q ss_pred chhHHHHHHHh-hcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHH----------Hhhhhhhhhhccccchhhhhhhh
Q 002304 233 SDVVFIQLCSM-IRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKK----------VLGATKEKKFHSLGAAECFEISA 300 (939)
Q Consensus 233 vddaf~aLc~a-L~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kk----------lm~~lk~kr~~~~l~~d~~~l~~ 300 (939)
+.||-+-+-+. +++.++...+.|.-.|-.... -+-++|....++- ++.-.|..... ..++ .
T Consensus 169 ~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~--~p~~-----~ 241 (948)
T KOG1058|consen 169 IPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA--NPAE-----K 241 (948)
T ss_pred cCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc--CHHH-----h
Confidence 34444444444 478888888898888877643 1223332211110 00000100000 0000 1
Q ss_pred hcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCH-HHHHHHHHHHhhhhhcccccchhhHH
Q 002304 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSV-TVRLQALETMHIMVTCEHLNLEDKHM 379 (939)
Q Consensus 301 s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~-~VRl~Aa~ALgkI~~~~~i~l~E~aL 379 (939)
+.-+..+...|.-+...|+-+|+.+|-.+.. .|.....|.+.+++++-++.. .|.+--..-|..+.+ .+..+-++.+
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~-~~~~il~~l~ 319 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA-LHEKILQGLI 319 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh-hhHHHHHHHH
Confidence 1223456677888889999999999999886 555567788888888877643 454444444444442 1122234566
Q ss_pred HHHHHhcCCCCHHHHHHHH-HHHhhccCCchhHH-HHHHHHHHHhhccCccc----hHHHHHHHHHhhcccccchHHHHH
Q 002304 380 HMFLGTLVDNSELVRCAAR-KILKLVKTPKLEFF-RLFIDGLLENLKIYPQD----EADVFSVLFFIGRSHGNFAACIIK 453 (939)
Q Consensus 380 ~~LL~~L~D~~~dVR~aA~-~aLg~i~l~~~~~l-~~~l~~LL~~L~~~peD----r~~I~~aL~~LG~~H~~lv~~lv~ 453 (939)
--++.+|.-++-+||+.+- .+++...--+++.+ +.+-..+.+--+..-+| |+...+++....-+-|+..+.+|+
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~ 399 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVS 399 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHH
Confidence 7788999999999997554 45666544444332 22222333311111111 666777777778888999999999
Q ss_pred HHhhhcCCCCCCCCCCCchhHHHHHHHHhhccccCcCCCCC-------------CChhhhhhhHhhhchhhhhhhhhh
Q 002304 454 EVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRS-------------IPPQIFSYAVTLLGRISYALSDVM 518 (939)
Q Consensus 454 ~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~s~~~~~~~-------------ip~~~fsh~~~~~~k~y~~l~D~m 518 (939)
.|++.+. |.+..+..++|+.+.++-...|+.-.+ .+. +|.-++...|-|--.+.||.
T Consensus 400 ~ll~fis-------D~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~k-i~rgalwi~GeYce~~~~i~ 469 (948)
T KOG1058|consen 400 LLLDFIS-------DSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSK-ICRGALWILGEYCEGLSEIQ 469 (948)
T ss_pred HHHHHhc-------cCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccc-cchhHHHHHHHHHhhhHHHH
Confidence 9999742 344556667777777776655521111 122 55556666676666677655
No 58
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.48 E-value=0.014 Score=72.07 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=91.9
Q ss_pred HHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccc-hhhhhhHHHHHHHhhCCCCchHHHHH
Q 002304 131 VRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFED-VDLIQGCCCRAVELLRDHEDCVRCAA 209 (939)
Q Consensus 131 ~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~-~~l~~~i~~~l~~lL~Ddd~~VR~aA 209 (939)
..+..--.|..++..-...+..+.+.++ ....|-+|++||..+...+...+ ......+++.+...++-.....|++.
T Consensus 594 mgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~ 671 (1233)
T KOG1824|consen 594 MGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLAT 671 (1233)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555577777766677777887776 44789999999999987654333 22345678888888888888889988
Q ss_pred HHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC
Q 002304 210 VRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM 264 (939)
Q Consensus 210 V~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~ 264 (939)
..++-.+-..+..+- ...+...++..+-.++.+.+.+|-+.|...|..+-.
T Consensus 672 l~a~~~L~~~~~~~~----~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 672 LTALDKLVKNYSDSI----PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred HHHHHHHHHHHhccc----cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 888877765442111 123445677788889999999999999998887643
No 59
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.45 E-value=0.011 Score=70.79 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=126.0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC
Q 002304 234 DVVFIQLCSMIRDMRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE 312 (939)
Q Consensus 234 ddaf~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le 312 (939)
.+.+..|..+.. .+..+.+.||.-+.++ +..+. +...|+.+++.+.|
T Consensus 22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~-------------------------------l~~~Ai~a~~DLcE 69 (556)
T PF05918_consen 22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPD-------------------------------LQEEAINAQLDLCE 69 (556)
T ss_dssp HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GG-------------------------------GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChh-------------------------------hHHHHHHHHHHHHh
Confidence 457777888877 4788888888888887 54331 24567889999999
Q ss_pred CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcC---CC
Q 002304 313 DEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLV---DN 389 (939)
Q Consensus 313 DE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~---D~ 389 (939)
||+..||+.|+..|..+...++++..+..|.|+.+|+-|+...+...=++|..+-..+ ....+..+...+. ..
T Consensus 70 Ded~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d----~k~tL~~lf~~i~~~~~~ 145 (556)
T PF05918_consen 70 DEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD----PKGTLTGLFSQIESSKSG 145 (556)
T ss_dssp -SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HS
T ss_pred cccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhcccC
Confidence 9999999999999999998889999999999999999999887777666665553211 0123334444443 55
Q ss_pred CHHHHHHHHHHHhh-c------cCC-chhHHHHHHHHHHHhhccCccc-hHHHHHHHHHhhc----ccccchHHHHHHHh
Q 002304 390 SELVRCAARKILKL-V------KTP-KLEFFRLFIDGLLENLKIYPQD-EADVFSVLFFIGR----SHGNFAACIIKEVC 456 (939)
Q Consensus 390 ~~dVR~aA~~aLg~-i------~l~-~~~~l~~~l~~LL~~L~~~peD-r~~I~~aL~~LG~----~H~~lv~~lv~~Ll 456 (939)
+..||..+...|.. + -+. ..+.-+.++....+.|.....+ -..+...|+.+.. ..+.....+++-+.
T Consensus 146 de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~ 225 (556)
T PF05918_consen 146 DEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIE 225 (556)
T ss_dssp -HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHH
Confidence 67789888765521 1 111 1233233333444444443322 3345556665543 33444444555444
Q ss_pred hhcCCCCCCCCCCCchhHHHHHHHHhhccc
Q 002304 457 QEIEPDSDDKLGFDNARVAAFLVLAISVPL 486 (939)
Q Consensus 457 ~~i~p~~~~e~~~dd~~yiA~Lili~~A~~ 486 (939)
+.. -++...+..|+.++.++|--+..|.
T Consensus 226 eQa--~Ld~~f~~sD~e~Idrli~C~~~Al 253 (556)
T PF05918_consen 226 EQA--DLDQPFDPSDPESIDRLISCLRQAL 253 (556)
T ss_dssp HHH--TTTS---SSSHHHHHHHHHHHHHHG
T ss_pred HHh--ccCCCCCCcCHHHHHHHHHHHHHhh
Confidence 432 1222245578899999988777766
No 60
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.41 E-value=0.0061 Score=73.47 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=165.0
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc--ccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH--VVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLI 221 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~--~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~ 221 (939)
+|...++..+..=++|+.+.-|+.++....++... ....+..+.+-.+..++.+++.++-++- --...+|...+.+-
T Consensus 712 vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 712 VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALG 790 (1172)
T ss_pred hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHh
Confidence 45667777777778898999999999988877653 2223556667777778888854333322 01112221111110
Q ss_pred hhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhh
Q 002304 222 ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISAS 301 (939)
Q Consensus 222 ~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s 301 (939)
...+.. .......+...|+.+++.||+.||+..|.+..+ +-..=..++|.+
T Consensus 791 ----~r~kpy-lpqi~stiL~rLnnksa~vRqqaadlis~la~V----lktc~ee~~m~~-------------------- 841 (1172)
T KOG0213|consen 791 ----GRVKPY-LPQICSTILWRLNNKSAKVRQQAADLISSLAKV----LKTCGEEKLMGH-------------------- 841 (1172)
T ss_pred ----hccccc-hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH----HHhccHHHHHHH--------------------
Confidence 000111 123445566789999999999999999998531 111111112222
Q ss_pred cchH-HHhhccCCCcHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc--cc
Q 002304 302 AAAG-TFVHGFEDEFYEVRKSACSSLGSLVIL------SEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCE--HL 372 (939)
Q Consensus 302 ~a~g-aLI~~LeDE~~eVR~aAaeALGkL~~~------s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~--~i 372 (939)
+| .|..-|..||+||=-....||+.+.+. .|. +...+|.|.-.|....+-|..+.+.-+|.|+..+ .+
T Consensus 842 --lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP-i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v 918 (1172)
T KOG0213|consen 842 --LGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP-IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV 918 (1172)
T ss_pred --hhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC-hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC
Confidence 22 355677888999988877777665531 111 3568899999999999999999999999999754 22
Q ss_pred cchh--hHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchH
Q 002304 373 NLED--KHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEA 431 (939)
Q Consensus 373 ~l~E--~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~ 431 (939)
..+| ..-=-|+++|+-.+.++|+++...+|.|. ...+=+-++..|++||+- ++|+
T Consensus 919 ~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia--kaIGPqdVLatLlnnLkv--qeRq 975 (1172)
T KOG0213|consen 919 SAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA--KAIGPQDVLATLLNNLKV--QERQ 975 (1172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HhcCHHHHHHHHHhcchH--HHHH
Confidence 2222 12234778889999999999999999964 456667788999998884 6666
No 61
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.41 E-value=0.0086 Score=71.79 Aligned_cols=245 Identities=16% Similarity=0.110 Sum_probs=145.3
Q ss_pred hHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHH
Q 002304 129 VSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCA 208 (939)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~a 208 (939)
+..=.-++|. ...+.|..++..+-. .....|+.=++||...|.... +..+.+.+...+-.- ..
T Consensus 313 f~~lv~~lR~-----~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a----------~~~i~~~i~~~~~~~-~e 375 (574)
T smart00638 313 FLRLVRLLRT-----LSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPA----------LKFIKQWIKNKKITP-LE 375 (574)
T ss_pred HHHHHHHHHh-----CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHH----------HHHHHHHHHcCCCCH-HH
Confidence 3333445554 346677777666554 337889999999987775543 455666665544333 23
Q ss_pred HHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcC----CCHHHHHHHHHHHhcccC---CcH----HHHHHHhhHH
Q 002304 209 AVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRD----MRMEVRVEAFNALGKVGM---ISE----IVLLQTLSKK 277 (939)
Q Consensus 209 AV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D----~s~~VR~~AA~ALG~i~~---vs~----~~LlqtL~kk 277 (939)
|++++..+...+. +-..+.+..+-.++++ .++.+|..|.-++|.+-. +.. ..+.+.+.+.
T Consensus 376 a~~~~~~~~~~~~---------~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~ 446 (574)
T smart00638 376 AAQLLAVLPHTAR---------YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKY 446 (574)
T ss_pred HHHHHHHHHHhhh---------cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 4444444333211 0113455566666654 477899999999998732 111 1122222222
Q ss_pred HhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhc-CC--CHH
Q 002304 278 VLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLN-DD--SVT 354 (939)
Q Consensus 278 lm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLn-De--~~~ 354 (939)
+.. -|-.+..+.+.+.+..++.|||++|.. .+++.|...+. +. ...
T Consensus 447 l~~-------------------------~l~~~~~~~~~~~~~~~LkaLGN~g~~------~~i~~l~~~l~~~~~~~~~ 495 (574)
T smart00638 447 LHE-------------------------LLQQAVSKGDEEEIQLYLKALGNAGHP------SSIKVLEPYLEGAEPLSTF 495 (574)
T ss_pred HHH-------------------------HHHHHHhcCCchheeeHHHhhhccCCh------hHHHHHHHhcCCCCCCCHH
Confidence 211 122233456668899999999999963 45566655555 33 578
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHhcC--CCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHH
Q 002304 355 VRLQALETMHIMVTCEHLNLEDKHMHMFLGTLV--DNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEAD 432 (939)
Q Consensus 355 VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~--D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~ 432 (939)
+|..|+.||.+++.... +..-+.++..+. +++++||-+|..+|=.++ |+...++...+.+-. ++..+++..
T Consensus 496 iR~~Av~Alr~~a~~~p----~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~-P~~~~l~~ia~~l~~--E~~~QV~sf 568 (574)
T smart00638 496 IRLAAILALRNLAKRDP----RKVQEVLLPIYLNRAEPPEVRMAAVLVLMETK-PSVALLQRIAELLNK--EPNLQVASF 568 (574)
T ss_pred HHHHHHHHHHHHHHhCc----hHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHhh--cCcHHHHHH
Confidence 99999999999974332 234445555444 688999977776665544 666665555555444 444566777
Q ss_pred HHHHH
Q 002304 433 VFSVL 437 (939)
Q Consensus 433 I~~aL 437 (939)
+|..|
T Consensus 569 v~S~l 573 (574)
T smart00638 569 VYSHI 573 (574)
T ss_pred hHHhh
Confidence 77655
No 62
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0023 Score=75.09 Aligned_cols=212 Identities=16% Similarity=0.127 Sum_probs=134.1
Q ss_pred hhhHHHHHHHhhCCCCchHHHHHHHHHHHhc-----chhhh-----h--cccccccccc------------hhHHHHHHH
Q 002304 187 IQGCCCRAVELLRDHEDCVRCAAVRVVSEWG-----KMLIA-----C--IDEKNRIDCS------------DVVFIQLCS 242 (939)
Q Consensus 187 ~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg-----~~~~~-----~--~~~~~~i~lv------------ddaf~aLc~ 242 (939)
-.++|..+.++|..|....=.+|+..+|.++ ...+. . ++-....|-+ ..+-.-|-.
T Consensus 444 n~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~e 523 (926)
T COG5116 444 NREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINE 523 (926)
T ss_pred cHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHH
Confidence 3568999999998888888888888766432 11110 0 0000011100 011224556
Q ss_pred hhcCCCHHHHHHHHHHHhcc--cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhc-cCCCcHHHH
Q 002304 243 MIRDMRMEVRVEAFNALGKV--GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHG-FEDEFYEVR 319 (939)
Q Consensus 243 aL~D~s~~VR~~AA~ALG~i--~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~-LeDE~~eVR 319 (939)
++.|.++..|+.-+-++|-- |. ...+++..++|- ..|-+.+||
T Consensus 524 ll~d~ds~lRy~G~fs~alAy~GT----------------------------------gn~~vv~~lLh~avsD~nDDVr 569 (926)
T COG5116 524 LLYDKDSILRYNGVFSLALAYVGT----------------------------------GNLGVVSTLLHYAVSDGNDDVR 569 (926)
T ss_pred HhcCchHHhhhccHHHHHHHHhcC----------------------------------CcchhHhhhheeecccCchHHH
Confidence 77888888888776666542 11 123445556655 889999999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHH
Q 002304 320 KSACSSLGSLVILSEKFAGEALNLLVDMLNDD-SVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAAR 398 (939)
Q Consensus 320 ~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe-~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~ 398 (939)
++|+-|||-.....+ .++...+.+|.|. +.+||...+-|||-.....- ..-+++.|-.+..|.+.-||++|-
T Consensus 570 RAAViAlGfvc~~D~----~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G---~~~a~diL~~L~~D~~dfVRQ~Am 642 (926)
T COG5116 570 RAAVIALGFVCCDDR----DLLVGTVELLSESHNFHVRAGVAVALGIACAGTG---DKVATDILEALMYDTNDFVRQSAM 642 (926)
T ss_pred HHHHHheeeeEecCc----chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc---cHHHHHHHHHHhhCcHHHHHHHHH
Confidence 999999999876554 4566666666665 89999999999997653111 234677888888999999999999
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhh
Q 002304 399 KILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIG 441 (939)
Q Consensus 399 ~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG 441 (939)
.+++.|-......+..=+..+.+++.+.--|++ -..+.++|
T Consensus 643 Ia~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh--e~glaklG 683 (926)
T COG5116 643 IAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH--ESGLAKLG 683 (926)
T ss_pred HHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh--HhHHHHHH
Confidence 999987554444444444444444444333333 33444444
No 63
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.36 E-value=0.00068 Score=63.72 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHh
Q 002304 164 VREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSM 243 (939)
Q Consensus 164 VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~a 243 (939)
.|+.++.+|....-.-...-....+.+.+.+++.+.|.|+.||..|.++|..+...... .-....+++|..|+..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-----~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-----EILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 47777777776643110001234567889999999999999999999999998765321 1122347899999999
Q ss_pred hcCCCHHHHHHHH
Q 002304 244 IRDMRMEVRVEAF 256 (939)
Q Consensus 244 L~D~s~~VR~~AA 256 (939)
+.|++.+||..|.
T Consensus 77 ~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 77 SADPDENVRSAAE 89 (97)
T ss_pred HcCCchhHHHHHH
Confidence 9999999999884
No 64
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.35 E-value=0.026 Score=69.54 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=75.2
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHH
Q 002304 191 CCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVL 270 (939)
Q Consensus 191 ~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~L 270 (939)
.+.+.+=|+|+++.+|-.|++.|+.+... .+.+.++..|.+.++|++++||+.||-+++++-.++.+..
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~~-----------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~ 162 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRVK-----------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY 162 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcChH-----------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh
Confidence 45566678888888888888888887752 2445677788888888888888888888888865554443
Q ss_pred HHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcc
Q 002304 271 LQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLV 330 (939)
Q Consensus 271 lqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~ 330 (939)
. +.|.+..+...+.|+++.|-.+|.-+|..+-
T Consensus 163 ~----------------------------~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 163 H----------------------------ELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred h----------------------------cccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 2 2345566677778888888888888887765
No 65
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=0.0095 Score=71.78 Aligned_cols=223 Identities=20% Similarity=0.119 Sum_probs=138.3
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccc
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRID 231 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~ 231 (939)
-++.....+|-.||--.+.-|..+.+.-.-.+.++.+.+...+...|.|..+.||.+|+.+|..+-++ +.+++.
T Consensus 89 hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-----~~dee~- 162 (892)
T KOG2025|consen 89 HLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-----PKDEEC- 162 (892)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-----CCCCcc-
Confidence 34566788999999999999988887433245677778888888899999999999999999998752 112222
Q ss_pred cchhHHHHHHHhh-cCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhh-hcchHHHhh
Q 002304 232 CSDVVFIQLCSMI-RDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA-SAAAGTFVH 309 (939)
Q Consensus 232 lvddaf~aLc~aL-~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~-s~a~gaLI~ 309 (939)
++...+...+ +||+..||++|---+.-=.+.-+-+++.+-+ +-.+.|+--...-+.+-++-.++ ..-+--+-.
T Consensus 163 ---~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarD--V~~anRrlvY~r~lpkid~r~lsi~krv~Llew 237 (892)
T KOG2025|consen 163 ---PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARD--VSGANRRLVYERCLPKIDLRSLSIDKRVLLLEW 237 (892)
T ss_pred ---cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhh--hhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Confidence 2445555555 8999999999865443322211222222211 11111111111001111111111 123445668
Q ss_pred ccCCCcHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHhcCCCH-HHHHHHHHHHhhhhhcccccchhhHHHHHHHhc
Q 002304 310 GFEDEFYEVRKSACSSLGS--LVILSEKFAGEALNLLVDMLNDDSV-TVRLQALETMHIMVTCEHLNLEDKHMHMFLGTL 386 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGk--L~~~s~~fA~~ALd~LvdmLnDe~~-~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L 386 (939)
||+|-+..||.+++++|.. +.. +..-+..|...++=++. .|+.+|++||-++.. . ....+.--+ +-.+
T Consensus 238 gLnDRe~sVk~A~~d~il~~Wl~~-----~dgni~ElL~~ldvsnss~vavk~lealf~~v~-e-~v~~~k~f~--~~~~ 308 (892)
T KOG2025|consen 238 GLNDREFSVKGALVDAILSGWLRF-----SDGNILELLERLDVSNSSEVAVKALEALFSGVR-E-DVGSCKNFD--LILV 308 (892)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhh-----ccccHHHHHHHhccccchHHHHHHHHHHHHHHH-H-Hhhhhhccc--chhh
Confidence 9999999999999999955 442 33456677788888766 999999999998541 1 111111111 3456
Q ss_pred CCCCHHHH
Q 002304 387 VDNSELVR 394 (939)
Q Consensus 387 ~D~~~dVR 394 (939)
+|..|++-
T Consensus 309 ~~~t~Eia 316 (892)
T KOG2025|consen 309 EDLTPEIA 316 (892)
T ss_pred hcccHHHH
Confidence 88888873
No 66
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.012 Score=69.48 Aligned_cols=328 Identities=17% Similarity=0.155 Sum_probs=195.4
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccc
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRID 231 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~ 231 (939)
+..++...++..-|+.++.+|....-.-...+......++++...-+.|.|..||.-|.+.|..+++... ++...
T Consensus 47 L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k-----~~v~~ 121 (675)
T KOG0212|consen 47 LAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAK-----GEVLV 121 (675)
T ss_pred HHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhc-----cCccc
Confidence 4457888899999999999887663321112234667899999999999999999999999998887431 22445
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHhcc-cC-C-------cHHHHHHHhhHHHhhhhhhhhhccccch-------hh
Q 002304 232 CSDVVFIQLCSMIRDMRMEVRVEAFNALGKV-GM-I-------SEIVLLQTLSKKVLGATKEKKFHSLGAA-------EC 295 (939)
Q Consensus 232 lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i-~~-v-------s~~~LlqtL~kklm~~lk~kr~~~~l~~-------d~ 295 (939)
.-+++|..+|....|.+..||-. |+.|-++ ++ | +-+.+.+.|...+....--.|- ..++| ..
T Consensus 122 ~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~-flv~Wl~~Lds~P~ 199 (675)
T KOG0212|consen 122 YFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQ-FLVSWLYVLDSVPD 199 (675)
T ss_pred chHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHH-HHHHHHHHHhcCCc
Confidence 55889999999999999999965 4555554 44 2 2234445554432110000000 00011 11
Q ss_pred hhhh--hhcchHHHhhccCCCcHHHHHHHHHHHHhccc---cchhh--HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 296 FEIS--ASAAAGTFVHGFEDEFYEVRKSACSSLGSLVI---LSEKF--AGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 296 ~~l~--~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~---~s~~f--A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
+++. -+...+.+..-|+|+..+||.-+=-.|++.-. .+|.. -.+.++.|+.-+....+..+.+|+.=+..+-.
T Consensus 200 ~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 200 LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhc
Confidence 1211 14456778888999999999766665554331 23332 14567889999999999999999888876653
Q ss_pred -ccc--ccchhhHHHHHHHhcCCCCHH-HHHHHHHH---H-hhc---cCCchhHHHHHHHHHHHhhccCccc-hHHHHHH
Q 002304 369 -CEH--LNLEDKHMHMFLGTLVDNSEL-VRCAARKI---L-KLV---KTPKLEFFRLFIDGLLENLKIYPQD-EADVFSV 436 (939)
Q Consensus 369 -~~~--i~l~E~aL~~LL~~L~D~~~d-VR~aA~~a---L-g~i---~l~~~~~l~~~l~~LL~~L~~~peD-r~~I~~a 436 (939)
.|+ +..-...+..++.++.|.... ++..+... + +.+ ...+...+.+.++.|..-+....++ |-.+..-
T Consensus 280 i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~W 359 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNW 359 (675)
T ss_pred CCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 121 122235667788888888773 44433322 1 111 1111123335666666655555444 4445555
Q ss_pred HHHhhcccccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhccccCc
Q 002304 437 LFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCE 489 (939)
Q Consensus 437 L~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~s~~ 489 (939)
+.-|-.+||.-+....+.++.+.-.... |=+|..+--.|-++.+-+.|..
T Consensus 360 i~~l~~~~p~ql~~h~~~if~tLL~tLs---d~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 360 IILLYHKAPGQLLVHNDSIFLTLLKTLS---DRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHhhCcchhhhhccHHHHHHHHhhc---CchhHHHHHHHHHHHHHhcCcc
Confidence 5555566665554433333332111111 2255566666666666666444
No 67
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0055 Score=73.93 Aligned_cols=210 Identities=18% Similarity=0.124 Sum_probs=133.8
Q ss_pred HHHHHHhhhcC-CCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcc--h---hhh
Q 002304 149 LFTVCLGLTKD-PYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGK--M---LIA 222 (939)
Q Consensus 149 L~~~L~~ll~D-~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~--~---~~~ 222 (939)
+.+-+...+++ .++-||.-|.-+||-.+=.. ...++|..+...|.-|+.--=.+|..++|.+.- . .+.
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS------a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaie 487 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGS------ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIE 487 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccc------ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHH
Confidence 44444544444 46889999888877543222 234689999999977666666777777775431 1 000
Q ss_pred -------hcccccccccc------------hhHHHHHHHhhcCCCHHHHHHHHHHHhcc--cCCcHHHHHHHhhHHHhhh
Q 002304 223 -------CIDEKNRIDCS------------DVVFIQLCSMIRDMRMEVRVEAFNALGKV--GMISEIVLLQTLSKKVLGA 281 (939)
Q Consensus 223 -------~~~~~~~i~lv------------ddaf~aLc~aL~D~s~~VR~~AA~ALG~i--~~vs~~~LlqtL~kklm~~ 281 (939)
.++-+..+|-+ .++=.-|-.+++|.++..|+.-.-+++-- +.
T Consensus 488 dm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT----------------- 550 (929)
T KOG2062|consen 488 DMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGT----------------- 550 (929)
T ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc-----------------
Confidence 00000011100 01112344567777777777665554432 11
Q ss_pred hhhhhhccccchhhhhhhhhcchHHHhhc-cCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC-CHHHHHHH
Q 002304 282 TKEKKFHSLGAAECFEISASAAAGTFVHG-FEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD-SVTVRLQA 359 (939)
Q Consensus 282 lk~kr~~~~l~~d~~~l~~s~a~gaLI~~-LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe-~~~VRl~A 359 (939)
...+++.-++|- ..|.+.+||++|+-+||-.--+.|+ .++..+.+|.+. +++||-.|
T Consensus 551 -----------------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----~~~s~V~lLses~N~HVRyGa 609 (929)
T KOG2062|consen 551 -----------------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----QLPSTVSLLSESYNPHVRYGA 609 (929)
T ss_pred -----------------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh----hchHHHHHHhhhcChhhhhhH
Confidence 122344445554 7899999999999999998876653 566677777666 89999999
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 360 LETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 360 a~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
+-|||--.. | .- ..++++.|-.+..|....||++|-.+++.|-
T Consensus 610 A~ALGIaCA-G-tG-~~eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 610 AMALGIACA-G-TG-LKEAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred HHHHhhhhc-C-CC-cHHHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 999996653 1 11 2357778888888999999999999988763
No 68
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.1 Score=63.94 Aligned_cols=354 Identities=16% Similarity=0.190 Sum_probs=186.4
Q ss_pred hcCCchHHHHHHhhh--ccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCC
Q 002304 124 CFASSVSVRLWLLRN--AERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDH 201 (939)
Q Consensus 124 ~~~~~~~~~~~~~~~--~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Dd 201 (939)
+..++.-.|.|-+|- +-|+.+=...++..+.+...|+.|+||+.|+-|+.++..-+. . --..+...+..+|.|.
T Consensus 117 L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e---~k~qL~e~I~~LLaD~ 192 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-E---QKDQLEEVIKKLLADR 192 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-h---hHHHHHHHHHHHhcCC
Confidence 445555677777776 223333333344455667788888888888888887775432 1 1123445566677888
Q ss_pred CchHHHHHHHHHH-------------------------Hhcchhh--------------h-hcc---ccc----------
Q 002304 202 EDCVRCAAVRVVS-------------------------EWGKMLI--------------A-CID---EKN---------- 228 (939)
Q Consensus 202 d~~VR~aAV~aLg-------------------------~lg~~~~--------------~-~~~---~~~---------- 228 (939)
++.|=-.|+-+.- .||+.+. + ..+ ++.
T Consensus 193 splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~ 272 (968)
T KOG1060|consen 193 SPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKY 272 (968)
T ss_pred CCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccc
Confidence 8877777776544 3443310 0 000 000
Q ss_pred ---ccccc-h----hHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhc------------
Q 002304 229 ---RIDCS-D----VVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFH------------ 288 (939)
Q Consensus 229 ---~i~lv-d----daf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~------------ 288 (939)
+.+.+ | --+..+-.++.-.++.|=.++|.++-.+....+.. ...|.+++-++..+..
T Consensus 273 ~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~---~i~kaLvrLLrs~~~vqyvvL~nIa~~s 349 (968)
T KOG1060|consen 273 NEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT---KIAKALVRLLRSNREVQYVVLQNIATIS 349 (968)
T ss_pred cccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH---HHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 01100 0 12233444566666666666666666664321111 0122233323322210
Q ss_pred --------cc------cchhh-------hh----hhhhc----chHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHH
Q 002304 289 --------SL------GAAEC-------FE----ISASA----AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGE 339 (939)
Q Consensus 289 --------~~------l~~d~-------~~----l~~s~----a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ 339 (939)
+- .+.|- ++ +.+.. ...-|-.-..+.+.+|=.+|+.|||.-+.........
T Consensus 350 ~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~t 429 (968)
T KOG1060|consen 350 IKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDT 429 (968)
T ss_pred hcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhH
Confidence 00 01110 11 11222 2223334445666789999999999988777777789
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc---c--cc--------------------------------chhhHHHHH
Q 002304 340 ALNLLVDMLNDDSVTVRLQALETMHIMVTCE---H--LN--------------------------------LEDKHMHMF 382 (939)
Q Consensus 340 ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~---~--i~--------------------------------l~E~aL~~L 382 (939)
+++.|++++...++.|=.+|+..+.++-... + +- +-.+.+..+
T Consensus 430 CL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~l 509 (968)
T KOG1060|consen 430 CLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKL 509 (968)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHH
Confidence 9999999999999999999998888775311 0 00 113555666
Q ss_pred HHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCc--cchHHHHHHHHHhhcccccchHHHHHHHhhhcC
Q 002304 383 LGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYP--QDEADVFSVLFFIGRSHGNFAACIIKEVCQEIE 460 (939)
Q Consensus 383 L~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~p--eDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~ 460 (939)
.....|+.++|+-.+-.+-.+.-+.+...++.+.+-.+. |.+|. -|-++-.|-++++-... .....-..+++=.-+
T Consensus 510 aksFs~E~~evKlQILnL~aKLyl~~~~~~kll~~Yv~~-L~~yD~sYDiRDRaRF~r~l~~~~-~~Ls~h~~ei~l~~K 587 (968)
T KOG1060|consen 510 AKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLVQYVFE-LARYDLSYDIRDRARFLRQLISPL-EALSKHAREIFLASK 587 (968)
T ss_pred HHhhccccchhhHHHHHhhhhheEechhhHHHHHHHHHH-HhccCCCcchhHHHHHHHHHhccH-HHHHHHHHHHhhccC
Confidence 667777777777666666555555444444444444443 33332 33344455555554321 111222233332235
Q ss_pred CCCCCCCCCCchhH-HHHHHHHhhccc
Q 002304 461 PDSDDKLGFDNARV-AAFLVLAISVPL 486 (939)
Q Consensus 461 p~~~~e~~~dd~~y-iA~Lili~~A~~ 486 (939)
|+-..|..++|+-| ...+-+++|++.
T Consensus 588 pa~~~es~f~~~~~~~gslS~lLn~~a 614 (968)
T KOG1060|consen 588 PAPVLESSFKDRHYQLGSLSLLLNAPA 614 (968)
T ss_pred CCccCcccccCCCcccchHHHHhcCcC
Confidence 55555555666532 224444555544
No 69
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0047 Score=76.99 Aligned_cols=213 Identities=16% Similarity=0.094 Sum_probs=130.6
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc---------------------------------------ccccchhhhh
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKH---------------------------------------VVFEDVDLIQ 188 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~---------------------------------------~~~~~~~l~~ 188 (939)
.++.-+++.+.|.|..||..|++++|++..+ |. +-.+..+
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl-Llps~l~ 419 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL-LLPSLLE 419 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC-cchHHHH
Confidence 6777888899999999999999999988764 11 1113334
Q ss_pred hHHHHHHHhhCCCC--------chHHHHHHHHHHHhcchhhhhcccccccccch-hHHHHHHHhhcCCCHHHHHHHHHHH
Q 002304 189 GCCCRAVELLRDHE--------DCVRCAAVRVVSEWGKMLIACIDEKNRIDCSD-VVFIQLCSMIRDMRMEVRVEAFNAL 259 (939)
Q Consensus 189 ~i~~~l~~lL~Ddd--------~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvd-daf~aLc~aL~D~s~~VR~~AA~AL 259 (939)
.+.|.+.++|.=++ ..||-+|..++|.++..+.+..-. +... -+-.-|+.++=|++..+|++|+-||
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~----p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLK----PVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhh----HHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 55666666664332 468999999999988765332110 1111 1223477899999999999999988
Q ss_pred hcc----cCCcH-HHHHHHhhHHHhhhhhhhhhccccch--hhhhhhhhcchHHHh-hccCCCcHHHHHHHHHHHHhccc
Q 002304 260 GKV----GMISE-IVLLQTLSKKVLGATKEKKFHSLGAA--ECFEISASAAAGTFV-HGFEDEFYEVRKSACSSLGSLVI 331 (939)
Q Consensus 260 G~i----~~vs~-~~LlqtL~kklm~~lk~kr~~~~l~~--d~~~l~~s~a~gaLI-~~LeDE~~eVR~aAaeALGkL~~ 331 (939)
-+. ++.|- --|.++.+---+.. +.+-.. .+.. ..|+-........++ +.+..=+..+|.-|+.+|.+|..
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~-rsNcy~-~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTN-RSNCYL-DLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhh-hhhHHH-HHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 554 44421 11222221111100 000000 0000 001100112223333 33555566889999999999888
Q ss_pred cchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 332 LSEKFA-GEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 332 ~s~~fA-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
..|++- ...+++|+++.--.+..-|..+.-|.|.+.
T Consensus 574 ~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 574 TEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred hhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 777754 467899999999999999999999998876
No 70
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.18 E-value=0.011 Score=71.19 Aligned_cols=246 Identities=15% Similarity=0.088 Sum_probs=136.7
Q ss_pred ChhhHHHHHHhhhcC-CCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhh
Q 002304 145 RPHLLFTVCLGLTKD-PYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIAC 223 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D-~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~ 223 (939)
..++|..++..+... .....|..=++||...|.... +..+.+++...+-.-- .|+.+|..+.......
T Consensus 360 ~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~a----------v~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~P 428 (618)
T PF01347_consen 360 SYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPA----------VKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRP 428 (618)
T ss_dssp -HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHH----------HHHHHHHHHTT-S-HH-HHHHHHHHHHHT----
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCC
Confidence 356666666544433 378899999999998775543 4556666654322222 2556666655432111
Q ss_pred cccccccccchhHHHHHHHhhc----CCCHHHHHHHHHHHhcccC---CcHHHHHHHhhHHHhhhhhhhhhccccchhhh
Q 002304 224 IDEKNRIDCSDVVFIQLCSMIR----DMRMEVRVEAFNALGKVGM---ISEIVLLQTLSKKVLGATKEKKFHSLGAAECF 296 (939)
Q Consensus 224 ~~~~~~i~lvddaf~aLc~aL~----D~s~~VR~~AA~ALG~i~~---vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~ 296 (939)
..+.+..+-.++. -.+..+|..|.-++|.+-. ...+.. ... ........+.
T Consensus 429 ---------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~---------~~~---~~~~~~~~~~- 486 (618)
T PF01347_consen 429 ---------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA---------EFC---DPCSRCIIEK- 486 (618)
T ss_dssp ----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------------------SS--GG-
T ss_pred ---------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc---------ccc---cccchhhHHH-
Confidence 1334444444444 3567899999999999732 110000 000 0000000000
Q ss_pred hhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC---CHHHHHHHHHHHhhhhhccccc
Q 002304 297 EISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD---SVTVRLQALETMHIMVTCEHLN 373 (939)
Q Consensus 297 ~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe---~~~VRl~Aa~ALgkI~~~~~i~ 373 (939)
.......-|..+.+..+.+.+..++.|||++|.. .+++.|...+.++ ...||..|+.||.+++...
T Consensus 487 --~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~--- 555 (618)
T PF01347_consen 487 --YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC--- 555 (618)
T ss_dssp --GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----
T ss_pred --HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC---
Confidence 0111222344455677889999999999999963 5788888888888 8899999999999987432
Q ss_pred chhhHHHHHHHhcCC--CCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHH
Q 002304 374 LEDKHMHMFLGTLVD--NSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLF 438 (939)
Q Consensus 374 l~E~aL~~LL~~L~D--~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~ 438 (939)
.+...+.++..+.| ++++||-+|..+|=.++ |+...++.+...+-. ++.+++...+|..|+
T Consensus 556 -~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~-P~~~~l~~i~~~l~~--E~~~QV~sfv~S~Lk 618 (618)
T PF01347_consen 556 -PEKVREILLPIFMNTTEDPEVRIAAYLILMRCN-PSPSVLQRIAQSLWN--EPSNQVASFVYSHLK 618 (618)
T ss_dssp -HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----HHHHHHHHHHHTT---S-HHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-CCHHHHHHHHHHHhh--CchHHHHHHHHHhcC
Confidence 34566777777664 67889988776555533 555555544444322 444577888887764
No 71
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.13 E-value=0.049 Score=64.64 Aligned_cols=274 Identities=14% Similarity=0.088 Sum_probs=149.6
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
.+++.+-.++.|.-.||--.|++++..+..+-+ +..++......+...|.......|..|++.|..++.....
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~----- 336 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ----- 336 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-----
Confidence 344456677888888999999998888765542 1233344456667778888899999999999888764321
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHh---hHHHhhhhhh-----hhhccc-cchhhhh
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTL---SKKVLGATKE-----KKFHSL-GAAECFE 297 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL---~kklm~~lk~-----kr~~~~-l~~d~~~ 297 (939)
++.. +=..+-.+++|.+..+-.-|...|-+-|. .+-+-|..+. -+.+.++.|- .|.... ...+.
T Consensus 337 -kv~v---cN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~-- 410 (898)
T COG5240 337 -KVSV---CNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK-- 410 (898)
T ss_pred -eeee---cChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--
Confidence 0110 11224457788888888888888877765 2322222211 1111111110 010000 00000
Q ss_pred hhhhcchHHHhhccCCC-cHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHhhhhhcccccch
Q 002304 298 ISASAAAGTFVHGFEDE-FYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD-SVTVRLQALETMHIMVTCEHLNLE 375 (939)
Q Consensus 298 l~~s~a~gaLI~~LeDE-~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe-~~~VRl~Aa~ALgkI~~~~~i~l~ 375 (939)
.....-|..-|.|| .++-++++++++..+-...|+.-++|+..|.+-.+|- ..++-..-..-||+=|+ +....
T Consensus 411 ---~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP--~a~~P 485 (898)
T COG5240 411 ---LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGP--RAKTP 485 (898)
T ss_pred ---HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCC--CCCCc
Confidence 00111223333332 4567777777776666555555567777777777764 44444444445555443 22233
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCc-----hhHHHHHHHHHHHhhccCccchHHHHHHHHHhh
Q 002304 376 DKHMHMFLGTLVDNSELVRCAARKILKLVKTPK-----LEFFRLFIDGLLENLKIYPQDEADVFSVLFFIG 441 (939)
Q Consensus 376 E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~-----~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG 441 (939)
-..+.-+...+-=+|.-||.+|..+|.+.+++. .+.++.++.+.++ +.+.+.|..+--+++.+.
T Consensus 486 ~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcln--D~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 486 GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLN--DQDDEVRDRASFLLRNMR 554 (898)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhh--cccHHHHHHHHHHHHhhh
Confidence 346667777777778888888888887766542 2222333333333 223334555555555555
No 72
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.028 Score=68.75 Aligned_cols=228 Identities=16% Similarity=0.159 Sum_probs=134.4
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
+...+-+++++++|.||+-|+.++.+++...- ++++-+.+.+.++|.|.+..|=.+++..+-.+-.....
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P----~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~------ 212 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVP----DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD------ 212 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc----hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH------
Confidence 34455679999999999999999999986543 56666788899999999999999999887765432100
Q ss_pred ccccchhHHHHHHHhhcC---------------CCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhh-hhhhhcc---
Q 002304 229 RIDCSDVVFIQLCSMIRD---------------MRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGAT-KEKKFHS--- 289 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~D---------------~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~l-k~kr~~~--- 289 (939)
.+.-..+....++..|++ ++|......-+.|+-+|...++. ...|.++ .+.-+..
T Consensus 213 ~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da------Sd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 213 ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA------SDLMNDILAQVATNTDSS 286 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH------HHHHHHHHHHHHhccccc
Confidence 000001122222222211 22333333444444443322111 0111111 0000000
Q ss_pred -ccch-hhhh----hhh--------hcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHH
Q 002304 290 -LGAA-ECFE----ISA--------SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTV 355 (939)
Q Consensus 290 -~l~~-d~~~----l~~--------s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~V 355 (939)
..+. -.|+ +|+ --|+..+-.-|...+-..|.-|..+|++.....+..+++--..+++.|+|.|...
T Consensus 287 kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SI 366 (866)
T KOG1062|consen 287 KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSI 366 (866)
T ss_pred ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHH
Confidence 0000 0010 111 1133344444445555666666666666666677777888899999999999999
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHH
Q 002304 356 RLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRC 395 (939)
Q Consensus 356 Rl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~ 395 (939)
|++|.+=+-.|-+..++ ...+.-++.-|.-.++++|.
T Consensus 367 krralELs~~lvn~~Nv---~~mv~eLl~fL~~~d~~~k~ 403 (866)
T KOG1062|consen 367 KRRALELSYALVNESNV---RVMVKELLEFLESSDEDFKA 403 (866)
T ss_pred HHHHHHHHHHHhccccH---HHHHHHHHHHHHhccHHHHH
Confidence 99999999998864333 34677777788877888873
No 73
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.14 Score=60.98 Aligned_cols=255 Identities=19% Similarity=0.170 Sum_probs=166.3
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIAC 223 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~ 223 (939)
..-+++++++.+.+.+.+|++|..-+..|.-+.....+.=....+++++.+.+.|.|+.++||..+=-+|+.+-..+..+
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 44568999999999999999999999999877653221112345668888999999999999999888888776543211
Q ss_pred cccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcc
Q 002304 224 IDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAA 303 (939)
Q Consensus 224 ~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a 303 (939)
-. .--.++..+-++.-+.-+++.++..|..-+.++-..+.+.++.. -++.
T Consensus 243 P~----s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~--------------------------~s~i 292 (675)
T KOG0212|consen 243 PS----SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY--------------------------LSGI 292 (675)
T ss_pred cc----ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh--------------------------hhhh
Confidence 00 00123455667778888888888888888877754443333222 2344
Q ss_pred hHHHhhccCCCcH-HHHHHHHHHHHhcc---c---cchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh--cc-cc
Q 002304 304 AGTFVHGFEDEFY-EVRKSACSSLGSLV---I---LSEKFA-GEALNLLVDMLNDDSVTVRLQALETMHIMVT--CE-HL 372 (939)
Q Consensus 304 ~gaLI~~LeDE~~-eVR~aAaeALGkL~---~---~s~~fA-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~--~~-~i 372 (939)
..++.-++.|.+. ..+..|...=|.+. . ...+++ ...++.|..-+.|+.++-|.++.+=+..+-. ++ -+
T Consensus 293 l~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 293 LTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred hhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh
Confidence 4555666665544 35554443332221 1 011122 3567888889999999999999888776643 12 22
Q ss_pred cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHhhccCccchH
Q 002304 373 NLEDKHMHMFLGTLVDNSELVRCAARKILKLVK-TPKLEFFRLFIDGLLENLKIYPQDEA 431 (939)
Q Consensus 373 ~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~-l~~~~~l~~~l~~LL~~L~~~peDr~ 431 (939)
...+..-+.++..|.|.+.+|-..+-.++..+. .++......++.+|++ .|.+|++
T Consensus 373 ~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~---~f~e~~~ 429 (675)
T KOG0212|consen 373 VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLE---MFKEDTK 429 (675)
T ss_pred hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHH---HHhhhhH
Confidence 233567788999999999999888877777653 3333354555666665 4445544
No 74
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.03 E-value=0.15 Score=61.37 Aligned_cols=254 Identities=16% Similarity=0.157 Sum_probs=150.1
Q ss_pred hHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHH
Q 002304 189 GCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEI 268 (939)
Q Consensus 189 ~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~ 268 (939)
+-|..++.+.+- ++.+.+.|+..+..+-..+. .+.++||.++.++.+|++..||.+|.+.|..+....++
T Consensus 23 ~~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP---------~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~ 92 (556)
T PF05918_consen 23 EDYKEILDGVKG-SPKEKRLAAQFIPKFFKHFP---------DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE 92 (556)
T ss_dssp HHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-G---------GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHhhCh---------hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH
Confidence 358888888874 68899999999998876542 34578999999999999999999999999999654433
Q ss_pred HHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q 002304 269 VLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDML 348 (939)
Q Consensus 269 ~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmL 348 (939)
++ +..++.|+..|.-|+...+...=.+|-.+-...| ...+..|.+-+
T Consensus 93 ~v------------------------------~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~---k~tL~~lf~~i 139 (556)
T PF05918_consen 93 HV------------------------------SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP---KGTLTGLFSQI 139 (556)
T ss_dssp -H------------------------------HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H---HHHHHHHHHHH
T ss_pred HH------------------------------hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHH
Confidence 32 3356788888888888888888888876654332 23444444444
Q ss_pred c---CCCHHHHHHHHHHH-hhhhhc--cccc----chhhHHHHHHHhcCCCCHHHHHHHHHHHhhccC----CchhHHHH
Q 002304 349 N---DDSVTVRLQALETM-HIMVTC--EHLN----LEDKHMHMFLGTLVDNSELVRCAARKILKLVKT----PKLEFFRL 414 (939)
Q Consensus 349 n---De~~~VRl~Aa~AL-gkI~~~--~~i~----l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l----~~~~~l~~ 414 (939)
. .+++.||.+++.-| .++.+. +.++ +.+-.++.+..+|+|-..+==.-+-.+|+..+. .+..+.+.
T Consensus 140 ~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe 219 (556)
T PF05918_consen 140 ESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE 219 (556)
T ss_dssp H---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH
T ss_pred HhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH
Confidence 3 56789999999877 444431 2222 334455677789988555444445567777776 45666666
Q ss_pred HHHHHHHh--hcc--CccchHHHHHHHHHhhcc-----cccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhcc
Q 002304 415 FIDGLLEN--LKI--YPQDEADVFSVLFFIGRS-----HGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVP 485 (939)
Q Consensus 415 ~l~~LL~~--L~~--~peDr~~I~~aL~~LG~~-----H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~ 485 (939)
+++-+.+- |+. .|.|...|-+.+..+-.. +.--.-.++.-+.+.+=|.++ ++++..-.-.|-++-+.+
T Consensus 220 Lv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~---~l~e~~kl~lLk~lAE~s 296 (556)
T PF05918_consen 220 LVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLS---DLPEDRKLDLLKLLAELS 296 (556)
T ss_dssp HHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChh---hCChHHHHHHHHHHHHHc
Confidence 66555532 222 346666555555444211 111123455666666667666 334444555555555555
Q ss_pred ccC
Q 002304 486 LSC 488 (939)
Q Consensus 486 ~s~ 488 (939)
..+
T Consensus 297 ~~~ 299 (556)
T PF05918_consen 297 PFC 299 (556)
T ss_dssp TT-
T ss_pred CCC
Confidence 544
No 75
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.95 E-value=0.0038 Score=58.71 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccccc---chhhHHHHHHHhcCCCCHHHHHHHHHH
Q 002304 334 EKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLN---LEDKHMHMFLGTLVDNSELVRCAARKI 400 (939)
Q Consensus 334 ~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~---l~E~aL~~LL~~L~D~~~dVR~aA~~a 400 (939)
..+..+.+++++..++|+++.||..|.++|.+|....+-. .-.+..+.+.....|.+++||.++..+
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 3445788999999999999999999999999998421111 124677888999999999999888543
No 76
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.033 Score=67.57 Aligned_cols=266 Identities=16% Similarity=0.099 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHH
Q 002304 161 YPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQ 239 (939)
Q Consensus 161 Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~a 239 (939)
.++----|+.|||-|+..-- .++-.-+.+.| .-+++.||.-|.-.||..|--. --.+..++
T Consensus 392 s~y~EGGalyAlGLIhA~hG-------~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS-----------a~~eiYe~ 453 (929)
T KOG2062|consen 392 SGYKEGGALYALGLIHANHG-------RGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS-----------ANEEIYEK 453 (929)
T ss_pred CCccccchhhhhhccccCcC-------ccHHHHHHHHHHhccchhhhhhhhhhccchhccc-----------ccHHHHHH
Confidence 34555678999998875321 01234455556 4568899999988888654211 11457788
Q ss_pred HHHhhcCCCHHHHHHHHHHHhcc--cCCcHHHHHHHhhHHH-hhhhhhhhhccccchhhhhhhhh-cchHHHhhccCCCc
Q 002304 240 LCSMIRDMRMEVRVEAFNALGKV--GMISEIVLLQTLSKKV-LGATKEKKFHSLGAAECFEISAS-AAAGTFVHGFEDEF 315 (939)
Q Consensus 240 Lc~aL~D~s~~VR~~AA~ALG~i--~~vs~~~LlqtL~kkl-m~~lk~kr~~~~l~~d~~~l~~s-~a~gaLI~~LeDE~ 315 (939)
|-..|.-.+.--=.+|.-++|-+ +..+++.++..+.=.. ..+-|-+|...-.- ..+..+.. ++-+..-..+.|.+
T Consensus 454 lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGi-aL~~ygrqe~Ad~lI~el~~dkd 532 (929)
T KOG2062|consen 454 LKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGI-ALVVYGRQEDADPLIKELLRDKD 532 (929)
T ss_pred HHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhH-HHHHhhhhhhhHHHHHHHhcCCc
Confidence 88888666665666777788876 6566665543221100 00111111100000 00111122 23334446778999
Q ss_pred HHHHHHHHHHHHh--ccccchhhHHHHHHHHHHH-hcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcC-CCCH
Q 002304 316 YEVRKSACSSLGS--LVILSEKFAGEALNLLVDM-LNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLV-DNSE 391 (939)
Q Consensus 316 ~eVR~aAaeALGk--L~~~s~~fA~~ALd~Lvdm-LnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~-D~~~ 391 (939)
+-.|...+.+++- -|..+ .+++..|+.. .+|.+.+||+.|+-|||-+--. +.++++..+.+|. .-|+
T Consensus 533 pilR~~Gm~t~alAy~GTgn----nkair~lLh~aVsD~nDDVrRaAVialGFVl~~-----dp~~~~s~V~lLses~N~ 603 (929)
T KOG2062|consen 533 PILRYGGMYTLALAYVGTGN----NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-----DPEQLPSTVSLLSESYNP 603 (929)
T ss_pred hhhhhhhHHHHHHHHhccCc----hhhHHHhhcccccccchHHHHHHHHHheeeEec-----ChhhchHHHHHHhhhcCh
Confidence 9999999988843 33322 4677666665 9999999999999999987632 2468888888887 5689
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccc--hHHHHHHHHHhhcccccchHHHHHHHhh
Q 002304 392 LVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD--EADVFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 392 dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peD--r~~I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
.||-+++-+||-.--.+ +.+.++. ||+-|..+|.| |+.+.-++.-|--+|-+...|-|..+.+
T Consensus 604 HVRyGaA~ALGIaCAGt--G~~eAi~-lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGT--GLKEAIN-LLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred hhhhhHHHHHhhhhcCC--CcHHHHH-HHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 99999999998753222 2222333 44445557765 8988888888865554554555554433
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.025 Score=68.39 Aligned_cols=241 Identities=17% Similarity=0.127 Sum_probs=143.5
Q ss_pred hcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhH
Q 002304 157 TKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVV 236 (939)
Q Consensus 157 l~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvdda 236 (939)
++..+-.=-..|+.+|..+.-++ +.-++++.+..+|+..-+.||..||-+|...=-.+.. -+..+
T Consensus 118 l~S~n~ye~giAL~GLS~fvTpd------LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---------Alr~~ 182 (877)
T KOG1059|consen 118 LNSSNVYEVGLALSGLSCIVTPD------LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---------ALRPC 182 (877)
T ss_pred hccCccchhhheecccccccCch------hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---------hHhhh
Confidence 33444444566788887776554 3345778899999999999999999998865332211 12568
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHH--HHhhHHHhh----h--hhhhhh-------ccccchh----hh
Q 002304 237 FIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLL--QTLSKKVLG----A--TKEKKF-------HSLGAAE----CF 296 (939)
Q Consensus 237 f~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~Ll--qtL~kklm~----~--lk~kr~-------~~~l~~d----~~ 296 (939)
|.+|..-|+|+++.|-.+|...+-++.. -+.++|. +.+-|-+.. | .|-.+. .+.+.+. .-
T Consensus 183 FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt 262 (877)
T KOG1059|consen 183 FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPIT 262 (877)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHH
Confidence 9999999999999999999999999833 3433332 222222111 0 000000 0111110 11
Q ss_pred hhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchh
Q 002304 297 EISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLED 376 (939)
Q Consensus 297 ~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E 376 (939)
++|.+...-.++. .=|+.-.+.++..=.....+-+.-|+.-|--.+.|.++..|--+..|+++|+....-.++
T Consensus 263 ~li~sT~AmSLlY------ECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq- 335 (877)
T KOG1059|consen 263 ELMESTVAMSLLY------ECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ- 335 (877)
T ss_pred HHHHhhHHHHHHH------HHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-
Confidence 2233322222221 011111111111101112233466788888899999999999999999999963322333
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 002304 377 KHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLE 421 (939)
Q Consensus 377 ~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~ 421 (939)
.+-+.++.+|.|.+..||-.|-.+|-.+- +..-+...++.|+.
T Consensus 336 a~kdlIlrcL~DkD~SIRlrALdLl~gmV--skkNl~eIVk~LM~ 378 (877)
T KOG1059|consen 336 AHKDLILRCLDDKDESIRLRALDLLYGMV--SKKNLMEIVKTLMK 378 (877)
T ss_pred HhHHHHHHHhccCCchhHHHHHHHHHHHh--hhhhHHHHHHHHHH
Confidence 57889999999999999988877665432 22223334555554
No 78
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.0047 Score=77.63 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=108.2
Q ss_pred hhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC-CCcHHHHHH
Q 002304 243 MIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE-DEFYEVRKS 321 (939)
Q Consensus 243 aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le-DE~~eVR~a 321 (939)
+.+| +..+.+|--+||++--+|.++= ....+.|+..++ -+.+-||..
T Consensus 933 ~~sd--p~Lq~AAtLaL~klM~iSa~fc------------------------------es~l~llftimeksp~p~IRsN 980 (1251)
T KOG0414|consen 933 LFSD--PELQAAATLALGKLMCISAEFC------------------------------ESHLPLLFTIMEKSPSPRIRSN 980 (1251)
T ss_pred cCCC--HHHHHHHHHHHHHHhhhhHHHH------------------------------HHHHHHHHHHHhcCCCceeeec
Confidence 4455 8899999999999987776662 334567888888 788999999
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 002304 322 ACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKIL 401 (939)
Q Consensus 322 AaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aL 401 (939)
++-+||.++-..|.++..--+.|-.++.|++..||..|+-.|..+--.+-+.+. -++.-...+|.|+++.||.-|...+
T Consensus 981 ~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK-Gql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 981 LVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK-GQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred chheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc-ccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999988888888899999999999999999999999988654544443 4788888999999999999888555
Q ss_pred hhcc
Q 002304 402 KLVK 405 (939)
Q Consensus 402 g~i~ 405 (939)
+++.
T Consensus 1060 ~Els 1063 (1251)
T KOG0414|consen 1060 KELS 1063 (1251)
T ss_pred HHhh
Confidence 5543
No 79
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.025 Score=68.38 Aligned_cols=170 Identities=20% Similarity=0.178 Sum_probs=119.6
Q ss_pred hhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHH----HHHHhhcCCCHHHHHHHHHHHh
Q 002304 185 DLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFI----QLCSMIRDMRMEVRVEAFNALG 260 (939)
Q Consensus 185 ~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~----aLc~aL~D~s~~VR~~AA~ALG 260 (939)
.++.+++..+++.....+..||......|..+.+.. .++ -+++|. ++...+.|..+.||.+|..+|.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-------~ei--dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN-------AEI--DDDVFNKLNEKLLIRLKDREPNVRIQAVLALS 151 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc-------ccc--CHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 477788889999999999999999999999887621 122 255555 5666889999999999999999
Q ss_pred cccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhcc-CCCcHHHHHHHHHHHHhccccchhhHHH
Q 002304 261 KVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGF-EDEFYEVRKSACSSLGSLVILSEKFAGE 339 (939)
Q Consensus 261 ~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~L-eDE~~eVR~aAaeALGkL~~~s~~fA~~ 339 (939)
++.+.+.+. .-.+..+|...+ .|+..|||++|..-+.-= ..
T Consensus 152 rlQ~d~~de------------------------------e~~v~n~l~~liqnDpS~EVRRaaLsnI~vd--------ns 193 (892)
T KOG2025|consen 152 RLQGDPKDE------------------------------ECPVVNLLKDLIQNDPSDEVRRAALSNISVD--------NS 193 (892)
T ss_pred HHhcCCCCC------------------------------cccHHHHHHHHHhcCCcHHHHHHHHHhhccC--------cc
Confidence 986422110 012344555555 499999999987544332 24
Q ss_pred HHHHHHHHhcCCCHHHHHHHH-HHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 340 ALNLLVDMLNDDSVTVRLQAL-ETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 340 ALd~LvdmLnDe~~~VRl~Aa-~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
.+|+++....|-+..+|.-+- +.|.+| ...... .+.-+..+--.|+|.+-.||+|+..++..
T Consensus 194 Tlp~IveRarDV~~anRrlvY~r~lpki-d~r~ls-i~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 194 TLPCIVERARDVSGANRRLVYERCLPKI-DLRSLS-IDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred cchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhh-HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 688888999999888887764 344444 211122 23555666678889999999988887755
No 80
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.88 E-value=0.015 Score=69.06 Aligned_cols=244 Identities=15% Similarity=0.154 Sum_probs=162.9
Q ss_pred ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc-c-cccchhhhhhHHHHHHHhhCCCCchHHHH------HHHHHHHh
Q 002304 145 RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH-V-VFEDVDLIQGCCCRAVELLRDHEDCVRCA------AVRVVSEW 216 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~-~-~~~~~~l~~~i~~~l~~lL~Ddd~~VR~a------AV~aLg~l 216 (939)
++..+..-+++...|+-.--|+.++.+..++... | .-.++.+.+-.|..++.+++.++-+|-.- .+-.|+..
T Consensus 518 g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r 597 (975)
T COG5181 518 GDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFR 597 (975)
T ss_pred CChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhc
Confidence 4556667778888888777788888877766542 1 11355667778888888887666555321 11222222
Q ss_pred cchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhh
Q 002304 217 GKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECF 296 (939)
Q Consensus 217 g~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~ 296 (939)
++. ...-.+..+...|+.+.+.||..||+..|.+..+ +++..+.+..
T Consensus 598 ~kp------------~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~v-------------lk~c~e~~~l-------- 644 (975)
T COG5181 598 GKP------------HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKV-------------LKACGETKEL-------- 644 (975)
T ss_pred cCc------------chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-------------HHhcchHHHH--------
Confidence 221 1133556778899999999999999999987531 1111110000
Q ss_pred hhhhhcchH-HHhhccCCCcHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhc
Q 002304 297 EISASAAAG-TFVHGFEDEFYEVRKSACSSLGSLVIL------SEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC 369 (939)
Q Consensus 297 ~l~~s~a~g-aLI~~LeDE~~eVR~aAaeALGkL~~~------s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~ 369 (939)
.-+| .|..-|..+|+||=-..+.|++.+-.. .|. +...+|.|.-.|....+-|-.+.+.-+|.|+..
T Consensus 645 -----~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~ 718 (975)
T COG5181 645 -----AKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP-ISGILPSLTPILRNKHQKVVANTIALVGTICMN 718 (975)
T ss_pred -----HHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhc
Confidence 0011 345567778888888777777665531 111 356789999999999999999999999999863
Q ss_pred c--cccchh--hHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchH
Q 002304 370 E--HLNLED--KHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEA 431 (939)
Q Consensus 370 ~--~i~l~E--~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~ 431 (939)
+ .+..+| ..-=-|+..|+..+.++|++|.+.+|+|. ...+=+-++..|++||+- ++|+
T Consensus 719 ~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is--~aiGPqdvL~~LlnnLkv--qeRq 780 (975)
T COG5181 719 SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS--RAIGPQDVLDILLNNLKV--QERQ 780 (975)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH--hhcCHHHHHHHHHhcchH--HHHH
Confidence 3 333332 12234678899999999999999999964 456667789999998884 6666
No 81
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.045 Score=70.65 Aligned_cols=277 Identities=18% Similarity=0.139 Sum_probs=148.9
Q ss_pred ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc-c-cccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHH---Hhcch
Q 002304 145 RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH-V-VFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVS---EWGKM 219 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~-~-~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg---~lg~~ 219 (939)
+...+...+...+.+|.|.+|.|+.-.|..+.+. + ..+-..-..+|..+|.++|.|+|+.+--.|.+.|| .+|+.
T Consensus 815 ~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~ 894 (1702)
T KOG0915|consen 815 RETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS 894 (1702)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc
Confidence 4556667788899999999999999888766442 1 11112335678899999999999999999999998 34443
Q ss_pred h-----hh-----hcc---------cccccc-------cc----hhHHHHHHHhhcC-----------------CCHHHH
Q 002304 220 L-----IA-----CID---------EKNRID-------CS----DVVFIQLCSMIRD-----------------MRMEVR 252 (939)
Q Consensus 220 ~-----~~-----~~~---------~~~~i~-------lv----ddaf~aLc~aL~D-----------------~s~~VR 252 (939)
- .. ..+ ++.++. .. -.....||++..| ..|.=|
T Consensus 895 ~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk 974 (1702)
T KOG0915|consen 895 SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSK 974 (1702)
T ss_pred hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcc
Confidence 1 00 000 000000 00 0244567765544 358889
Q ss_pred HHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcccc
Q 002304 253 VEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL 332 (939)
Q Consensus 253 ~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~ 332 (939)
.-||-.||.|..-+.+.+++++. +++..+-+ -==|++..|+.+=..-.+.|...
T Consensus 975 ~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyR-------------------------Y~yDP~~~Vq~aM~sIW~~Li~D 1028 (1702)
T KOG0915|consen 975 KGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYR-------------------------YQYDPDKKVQDAMTSIWNALITD 1028 (1702)
T ss_pred cchhhchHHHHHHHHHhhhhHHH-HhhHHHhh-------------------------hccCCcHHHHHHHHHHHHHhccC
Confidence 99999999986656666677663 33333222 12245555554444444444432
Q ss_pred chh----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc-ccch---hhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 333 SEK----FAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH-LNLE---DKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 333 s~~----fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~-i~l~---E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
+.. +..+.++-|+.-+.+..|.||.++--||..+-.... ..+. .+...++..+.+|--.-||+++..+...+
T Consensus 1029 ~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~l 1108 (1702)
T KOG0915|consen 1029 SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARAL 1108 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 334455555555555555555555555555532110 0011 12334444455555555665555443221
Q ss_pred c--------CCchhHHHHHHHHHHHh------hccCccchHHHHHHHHHhhcccccc
Q 002304 405 K--------TPKLEFFRLFIDGLLEN------LKIYPQDEADVFSVLFFIGRSHGNF 447 (939)
Q Consensus 405 ~--------l~~~~~l~~~l~~LL~~------L~~~peDr~~I~~aL~~LG~~H~~l 447 (939)
. ..+...-+.++..+|+. +.+.+++|+.-...+-+|.++.|..
T Consensus 1109 sKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1109 SKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred HHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh
Confidence 1 11111122334444442 2344556666666666665554433
No 82
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.87 E-value=0.025 Score=69.79 Aligned_cols=258 Identities=17% Similarity=0.144 Sum_probs=170.0
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
....+..+++.++.-.| +|+..|..+.........-.-.++.+.+++.|+.++..+...++..|..++-.-... +
T Consensus 251 ~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK-~--- 325 (708)
T PF05804_consen 251 ELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK-D--- 325 (708)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-H---
Confidence 34566677887776666 778888888765321111123457888999999999999999999999887432110 0
Q ss_pred ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHh
Q 002304 229 RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFV 308 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI 308 (939)
.+ ....++++|+.++.-++..++..|.+.|.++...+..- -.++..|.++.|+
T Consensus 326 ~m-~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R--------------------------~~mV~~GlIPkLv 378 (708)
T PF05804_consen 326 EM-AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR--------------------------SQMVSLGLIPKLV 378 (708)
T ss_pred HH-HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH--------------------------HHHHHCCCcHHHH
Confidence 01 12457899999999999999999999999986432111 1123678999999
Q ss_pred hccCCCcHHHHHHHHHHHHhcccc---chhhH-HHHHHHHHHHhcC-CCHHHHHHHHHHHhhhhhcccc---cchhhHHH
Q 002304 309 HGFEDEFYEVRKSACSSLGSLVIL---SEKFA-GEALNLLVDMLND-DSVTVRLQALETMHIMVTCEHL---NLEDKHMH 380 (939)
Q Consensus 309 ~~LeDE~~eVR~aAaeALGkL~~~---s~~fA-~~ALd~LvdmLnD-e~~~VRl~Aa~ALgkI~~~~~i---~l~E~aL~ 380 (939)
..|.|+ ..|..|...|..+... ..-|+ ..+++.|++++.. +.+.|...++..+-+++...+- -....-++
T Consensus 379 ~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~ 456 (708)
T PF05804_consen 379 ELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQ 456 (708)
T ss_pred HHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHH
Confidence 999987 4566678888777753 12233 4689999997655 5777888888888888742110 01112233
Q ss_pred HHHH-hcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhc
Q 002304 381 MFLG-TLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGR 442 (939)
Q Consensus 381 ~LL~-~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~ 442 (939)
.|+. +++-.++-+=+-++.+..--+ +....+...+..|+..+. ..++.....+||+-|+.
T Consensus 457 ~L~~ra~~~~D~lLlKlIRNiS~h~~-~~k~~f~~~i~~L~~~v~-~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 457 SLMKRALKTRDPLLLKLIRNISQHDG-PLKELFVDFIGDLAKIVS-SGDSEEFVVECLGILAN 517 (708)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHHHh
Confidence 3332 455555555544444433322 455667777777777654 45567788888888874
No 83
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.85 E-value=0.047 Score=65.92 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=104.0
Q ss_pred HHHHHHHhhCC----CCchHHHHHHHHHHHhcchhhhhc---------ccccccccchhHHHHHHHhhcCCCHHHHHHHH
Q 002304 190 CCCRAVELLRD----HEDCVRCAAVRVVSEWGKMLIACI---------DEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAF 256 (939)
Q Consensus 190 i~~~l~~lL~D----dd~~VR~aAV~aLg~lg~~~~~~~---------~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA 256 (939)
.+..+..+++. .++.+|..|+-++|.+-...-... .....-.++......+..+.+..+...+..+.
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34444455543 467899999999998766431110 00001112233344555677889999999999
Q ss_pred HHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCC---cHHHHHHHHHHHHhccccc
Q 002304 257 NALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDE---FYEVRKSACSSLGSLVILS 333 (939)
Q Consensus 257 ~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE---~~eVR~aAaeALGkL~~~s 333 (939)
+|||++|. +..++.|...++++ ...||.+|+.||.+++...
T Consensus 512 kaLgN~g~------------------------------------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 512 KALGNLGH------------------------------------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp HHHHHHT-------------------------------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHhhccCC------------------------------------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 99999984 22334444445444 7899999999999887654
Q ss_pred hhhHHHHHHHHHHHhcCC--CHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhc-CCCCHHHHHHHHHHH
Q 002304 334 EKFAGEALNLLVDMLNDD--SVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTL-VDNSELVRCAARKIL 401 (939)
Q Consensus 334 ~~fA~~ALd~LvdmLnDe--~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L-~D~~~dVR~aA~~aL 401 (939)
| .++.+.|...+.|. +.+||.+|...|.+-.+ ....+..+...| .|++..|+..+...|
T Consensus 556 ~---~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P------~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 556 P---EKVREILLPIFMNTTEDPEVRIAAYLILMRCNP------SPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp H---HHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred c---HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC------CHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 4 46778888888764 66799999999998654 234666777766 488889987665443
No 84
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.063 Score=65.35 Aligned_cols=217 Identities=18% Similarity=0.137 Sum_probs=115.5
Q ss_pred hHHHhhhhhhcccccccchhhhhhhhhhhcCCCCChhhHHHHHHHHhhhcCCCCCCchhhHHHHHHhhcccccCCCCcch
Q 002304 3 EQIAQNCEQSLSVSKRHSLRALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRHPHFSPL 82 (939)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~t~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 82 (939)
.||.+.-|.+-. .--.+++.+|--+++|-. +++++|-+++|.-=+ .+-|+||=|= .
T Consensus 23 ~~ik~~Lek~~~---~~KIeamK~ii~~mlnGe----~~p~Llm~IiRfvlp------s~~~elKKLl-----------y 78 (948)
T KOG1058|consen 23 DEIKEKLEKGDD---EVKIEAMKKIIALMLNGE----DLPSLLMTIIRFVLP------SRNHELKKLL-----------Y 78 (948)
T ss_pred HHHHHHHhcCCh---HHHHHHHHHHHHHHHcCC----CchHHHHHHhheeec------cCchHHHHHH-----------H
Confidence 455666664422 223588999999999864 577899999998766 2556665331 2
Q ss_pred hhhhhh-hccccccccchhhHH---HHhhhccCC-chhHHHHHHHhhcCCchHHHHHHhhh-ccccCCChhhHH----HH
Q 002304 83 ISNSLR-SNSLLFSSYSPRLAA---AAALAVISD-HTVDDRFFVSLCFASSVSVRLWLLRN-AERFNVRPHLLF----TV 152 (939)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~~l~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~L~----~~ 152 (939)
+|=++. ++.-..+ .+-- +|. +-.++ .|=.+| .+|. -+|+ .+ .+..+|+ +.
T Consensus 79 ~ywE~vPKt~~dgk----l~~EMILvcn-a~RkDLQHPNEy-----iRG~-------TLRFLck---LkE~ELlepl~p~ 138 (948)
T KOG1058|consen 79 YYWELVPKTDSDGK----LLHEMILVCN-AYRKDLQHPNEY-----IRGS-------TLRFLCK---LKEPELLEPLMPS 138 (948)
T ss_pred HHHHHccccCCCcc----cHHHHHHHHH-HHhhhccCchHh-----hcch-------hhhhhhh---cCcHHHhhhhHHH
Confidence 233332 2222111 1110 010 00011 022222 1222 2333 22 3344444 45
Q ss_pred HHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchh-----------h
Q 002304 153 CLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKML-----------I 221 (939)
Q Consensus 153 L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~-----------~ 221 (939)
+.+-++|+.++|||.|+-|+..|......+-..+. ++... -++++.|++-.+.|--.|....+.. +
T Consensus 139 IracleHrhsYVRrNAilaifsIyk~~~~L~pDap-eLi~~--fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi 215 (948)
T KOG1058|consen 139 IRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAP-ELIES--FLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQI 215 (948)
T ss_pred HHHHHhCcchhhhhhhheeehhHHhhhhhhcCChH-HHHHH--HHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhc
Confidence 66789999999999999999999876432111111 11111 1347888888888876665443321 0
Q ss_pred hh-cccc--------cccccc-----hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCc
Q 002304 222 AC-IDEK--------NRIDCS-----DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMIS 266 (939)
Q Consensus 222 ~~-~~~~--------~~i~lv-----ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs 266 (939)
++ ++.- .++.+. ..-+.-|-..|.-.+..|+++||-+|-.+.+.+
T Consensus 216 ~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 216 PSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred cCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 00 0000 000000 011233455888889999999999999987654
No 85
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.81 E-value=0.027 Score=68.25 Aligned_cols=314 Identities=14% Similarity=0.119 Sum_probs=193.5
Q ss_pred cchhhhhhh--hccccccccchhhHHHHhhh----ccCCc----hhHHHHHHHhhcCCchH-----HHHHHhhh---ccc
Q 002304 80 SPLISNSLR--SNSLLFSSYSPRLAAAAALA----VISDH----TVDDRFFVSLCFASSVS-----VRLWLLRN---AER 141 (939)
Q Consensus 80 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~ 141 (939)
-|||.-+|. =..+++++--|.+--.++|+ .|-.. |+-.-|+..|==.-|=. ..+.---| -++
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 355555554 33455555555665666666 22222 44444554442221111 11111112 123
Q ss_pred cCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhh--hhhHHHHHHHhhCCCCchHHHHHHHHHHHhcch
Q 002304 142 FNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDL--IQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKM 219 (939)
Q Consensus 142 ~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l--~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~ 219 (939)
+.=+-..+++.+...+++...-|-...++-+|.|++++. +..++ +--|.=.++++|+....+.|++|++.+|.++..
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp-E~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP-EYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 333566888889999999999999999999999999874 22111 222444568888888999999999999988764
Q ss_pred hhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhh
Q 002304 220 LIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEIS 299 (939)
Q Consensus 220 ~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~ 299 (939)
+- ..|++..|.+-|+-.+.+-|....-+++-.+....
T Consensus 956 IG-----------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~-------------------------------- 992 (1172)
T KOG0213|consen 956 IG-----------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG-------------------------------- 992 (1172)
T ss_pred cC-----------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC--------------------------------
Confidence 31 14566666665554444444433333333221100
Q ss_pred hhcchHHHhhccCCCcHHHHHHHHHHHHhc----cccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh----ccc
Q 002304 300 ASAAAGTFVHGFEDEFYEVRKSACSSLGSL----VILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT----CEH 371 (939)
Q Consensus 300 ~s~a~gaLI~~LeDE~~eVR~aAaeALGkL----~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~----~~~ 371 (939)
.=.+.+++..--+-++..|......||+-+ |.-+.++.....|.|.|++-|.+..=|.-|..++..|+- .|.
T Consensus 993 pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~ 1072 (1172)
T KOG0213|consen 993 PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGC 1072 (1172)
T ss_pred chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCc
Confidence 012456677777777888888888888543 223345566778999999999999999999999999874 111
Q ss_pred ccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc--CCchhHHHHHHHHHHHhhccCccchHHHHHHHHHh
Q 002304 372 LNLEDKHMHMFLGTLVDNSELVRCAARKILKLVK--TPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFI 440 (939)
Q Consensus 372 i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~--l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~L 440 (939)
...--+.++.+-...-|.+|.|-++..+++..+. +.....++.++++|.. .-..+|+.-|.+...+
T Consensus 1073 eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFH---ParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1073 EDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFH---PARKVRKRYWTVYNSM 1140 (1172)
T ss_pred HHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccC---cHHHHHHHHHHHHHhH
Confidence 1111234455556677999999998888776543 4455566666666653 2225688888888776
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.74 E-value=0.064 Score=62.20 Aligned_cols=199 Identities=19% Similarity=0.166 Sum_probs=129.2
Q ss_pred hHHHHHHh-hhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 148 LLFTVCLG-LTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 148 ~L~~~L~~-ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
+++..+.. .++..++.+|.+|++.|+-+.++-. +....++++..+...+ .+.++..|..+++.+.++.+..+-.++
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP--DDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 45555554 4555669999999999999988732 1123345556665556 788999999999999998876543322
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchH
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAG 305 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~g 305 (939)
+...+.+..|..++.| +.+...||+++|-+-...++++-. -.+...+-+-+. + +=....+
T Consensus 267 -----~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~-~~~a~vklLykQ---------R---~F~~~~p 326 (415)
T PF12460_consen 267 -----PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNK-ENHANVKLLYKQ---------R---FFTQVLP 326 (415)
T ss_pred -----chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCc-cccchhhhHHhH---------H---HHHHHHH
Confidence 2235677889999999 889999999999985444444311 000011101000 0 0133566
Q ss_pred HHhhccCCCcHHHHHHHHHHHHhccccchh-h----HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 306 TFVHGFEDEFYEVRKSACSSLGSLVILSEK-F----AGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 306 aLI~~LeDE~~eVR~aAaeALGkL~~~s~~-f----A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
.++.+.++...++|..-..||..+-..-|. . ..+.+|.|++.+.=++..||..++++|..+-.
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 777777776666888888888776543222 1 24567777777777777777777777776653
No 87
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.67 E-value=0.03 Score=67.20 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=63.7
Q ss_pred ChhhHHHHHHhhhcCC----CHHHHHHHHHHHHhhhhcccccc--------hhhhhhHHHHHHHhhCCCCchHHHHHHHH
Q 002304 145 RPHLLFTVCLGLTKDP----YPYVREAALNGLVCLLKHVVFED--------VDLIQGCCCRAVELLRDHEDCVRCAAVRV 212 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~----Dp~VRraAl~AL~~L~~~~~~~~--------~~l~~~i~~~l~~lL~Ddd~~VR~aAV~a 212 (939)
...+++..+.++++++ .+.+|..|+-+++.+........ ..+.+.+...+..+.++.+...+..++++
T Consensus 390 Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lka 469 (574)
T smart00638 390 PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKA 469 (574)
T ss_pred CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHh
Confidence 5667788888888764 77899999999998876432111 11222223333344455667777777888
Q ss_pred HHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhccc
Q 002304 213 VSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVG 263 (939)
Q Consensus 213 Lg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~ 263 (939)
||-+|... .-.++.++...-.+.+..||.+|.+||.++.
T Consensus 470 LGN~g~~~------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 470 LGNAGHPS------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred hhccCChh------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 87777521 1122233322223456677777777777663
No 88
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.59 E-value=0.028 Score=66.58 Aligned_cols=247 Identities=17% Similarity=0.169 Sum_probs=148.5
Q ss_pred CChhhH---HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchh
Q 002304 144 VRPHLL---FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKML 220 (939)
Q Consensus 144 v~~~~L---~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~ 220 (939)
++++.+ +..+..++..+....|-+|++-|-++....- ..+..|-+.+-.+..|.+-..-.=|+-.|-+-|..
T Consensus 296 v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P----~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~- 370 (898)
T COG5240 296 VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP----QKVSVCNKEVESLISDENRTISTYAITTLLKTGTE- 370 (898)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC----ceeeecChhHHHHhhcccccchHHHHHHHHHcCch-
Confidence 555444 4466779999999999999999999876431 22234677788899999999888888888776652
Q ss_pred hhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHH--HHHhhHHHhhh--hhhhhhccccchhh
Q 002304 221 IACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVL--LQTLSKKVLGA--TKEKKFHSLGAAEC 295 (939)
Q Consensus 221 ~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~L--lqtL~kklm~~--lk~kr~~~~l~~d~ 295 (939)
.-++..+..|..++.|.+-.-..-|.+++..+.. .+...+ +.-|..-+... ++-|+.....-.+-
T Consensus 371 ----------e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~ 440 (898)
T COG5240 371 ----------ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDA 440 (898)
T ss_pred ----------hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 1235556677888999998888888888887744 333221 11111111110 00111100000000
Q ss_pred hh---hhhhcchHHHhhccCCC-cHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cc
Q 002304 296 FE---ISASAAAGTFVHGFEDE-FYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CE 370 (939)
Q Consensus 296 ~~---l~~s~a~gaLI~~LeDE-~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~ 370 (939)
.+ -+...+..-|-.-.||- |.++-.....-||+=|.+.+. ..+-+-.+...+-=|+..||.+|+.||.|.|- ..
T Consensus 441 ~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~-P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~ 519 (898)
T COG5240 441 MENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKT-PGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS 519 (898)
T ss_pred HhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC-cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc
Confidence 00 00122333333444442 333322233334443322111 12344555555566888999999999999984 22
Q ss_pred cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccC
Q 002304 371 HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKT 406 (939)
Q Consensus 371 ~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l 406 (939)
...+.+.....+-.+|+|.+.+||..|..+|..+.+
T Consensus 520 d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 520 DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 334556667788889999999999999998888764
No 89
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.53 E-value=0.021 Score=67.70 Aligned_cols=174 Identities=16% Similarity=0.112 Sum_probs=123.6
Q ss_pred hhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC
Q 002304 185 DLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM 264 (939)
Q Consensus 185 ~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~ 264 (939)
.++.+++..+++.+...|..||......|..+.+.+...++ .+.+-...+|...+-|..+.||.+|..+|.++..
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-----~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-----VLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-----HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 56777888999999999999999999999988874322111 1223345688899999999999999999999854
Q ss_pred Cc--HHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhcc-CCCcHHHHHHHHHHHHhccccchhhHHHHH
Q 002304 265 IS--EIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGF-EDEFYEVRKSACSSLGSLVILSEKFAGEAL 341 (939)
Q Consensus 265 vs--~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~L-eDE~~eVR~aAaeALGkL~~~s~~fA~~AL 341 (939)
.+ ++.- ....|+..+ .|+..|||++|.--+.. . ....
T Consensus 162 ~~~neen~--------------------------------~~n~l~~~vqnDPS~EVRr~allni~v---d-----nsT~ 201 (885)
T COG5218 162 MELNEENR--------------------------------IVNLLKDIVQNDPSDEVRRLALLNISV---D-----NSTY 201 (885)
T ss_pred ccCChHHH--------------------------------HHHHHHHHHhcCcHHHHHHHHHHHeee---C-----CCcc
Confidence 22 1111 111233233 59999999998754433 2 1357
Q ss_pred HHHHHHhcCCCHHHHHH-HHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 342 NLLVDMLNDDSVTVRLQ-ALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 342 d~LvdmLnDe~~~VRl~-Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
|+++....|-+-.-|.- =.+.|.+||....+.. ++.+-.+--.|.|..-.||.++..++..-
T Consensus 202 p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi-~kri~l~ewgl~dRe~sv~~a~~d~ia~~ 264 (885)
T COG5218 202 PCILERARDVSGANRRMVYERCLPRIGDLKSLSI-DKRILLMEWGLLDREFSVKGALVDAIASA 264 (885)
T ss_pred hhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc-cceehhhhhcchhhhhhHHHHHHHHHHHH
Confidence 88888888887765554 5788888886444444 34455667789999999999999887664
No 90
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.39 E-value=0.082 Score=57.89 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=120.8
Q ss_pred HHHHHHHhhC-CCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHH
Q 002304 190 CCCRAVELLR-DHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEI 268 (939)
Q Consensus 190 i~~~l~~lL~-Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~ 268 (939)
-++.++.+|+ .+|+.++..|.-++|..+...... + -++- -.++.-+..+++|+++.||..|.++|..+..-.++
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq-~---~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ-D---IIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHH-H---HHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4678888887 679999999999999876531100 0 0010 12556788999999999999999999998543322
Q ss_pred H-HHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc--hhhHHHHHHHHH
Q 002304 269 V-LLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS--EKFAGEALNLLV 345 (939)
Q Consensus 269 ~-LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s--~~fA~~ALd~Lv 345 (939)
. ..+.- -..+|.-.+.. .-+.+|..++...|+.|...+ -.+....++.++
T Consensus 88 ~~~Ik~~-------------------------i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll 140 (254)
T PF04826_consen 88 QEQIKMY-------------------------IPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLL 140 (254)
T ss_pred HHHHHHH-------------------------HHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHH
Confidence 2 11111 11223322222 235588899999999997532 123356899999
Q ss_pred HHhcCCCHHHHHHHHHHHhhhhhccc---ccchhhHHHHHHHhcCCC-CHHHHHHHHHHHhhc
Q 002304 346 DMLNDDSVTVRLQALETMHIMVTCEH---LNLEDKHMHMFLGTLVDN-SELVRCAARKILKLV 404 (939)
Q Consensus 346 dmLnDe~~~VRl~Aa~ALgkI~~~~~---i~l~E~aL~~LL~~L~D~-~~dVR~aA~~aLg~i 404 (939)
.++...+..+|.++++.|..++.... --+..+.+..|+.+++.. ..++-..+-.++..+
T Consensus 141 ~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 141 SLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred HHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 99999999999999999999995221 113335666777777754 555554454444443
No 91
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.29 E-value=0.0054 Score=45.67 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 341 LNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 341 Ld~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
+|.+..+++|+++.||..|+++||+|+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 566777777777777777777777765
No 92
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.68 Score=56.58 Aligned_cols=253 Identities=15% Similarity=0.130 Sum_probs=158.8
Q ss_pred hhHHHHHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHH
Q 002304 114 TVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCR 193 (939)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~ 193 (939)
+..-|+|.+++...+ ++ + ...++..+..-+...||.----|+...+.+|.+.. .+..+..
T Consensus 91 KqIGYl~is~L~n~n----------~d---l-~klvin~iknDL~srn~~fv~LAL~~I~niG~re~------~ea~~~D 150 (938)
T KOG1077|consen 91 KQIGYLFISLLLNEN----------SD---L-MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREM------AEAFADD 150 (938)
T ss_pred HHHhHHHHHHHHhcc----------hH---H-HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhH------HHHhhhh
Confidence 778899998876654 22 1 11233344445556778888899999999987753 2233444
Q ss_pred HHHhh--CCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc-cCCcHHH-
Q 002304 194 AVELL--RDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV-GMISEIV- 269 (939)
Q Consensus 194 l~~lL--~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs~~~- 269 (939)
+-++| .|..+.||..|+-.|=.+=.... ..--.++.+..+++.|+|.++.|=.+|...+--+ +..++.+
T Consensus 151 I~KlLvS~~~~~~vkqkaALclL~L~r~sp-------Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 151 IPKLLVSGSSMDYVKQKAALCLLRLFRKSP-------DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred hHHHHhCCcchHHHHHHHHHHHHHHHhcCc-------cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence 45666 47778999988776654432110 1122367889999999999999988887666554 2222221
Q ss_pred --HHHHh---------------------------hHHHhhhhh----------hhhh-------------cccc------
Q 002304 270 --LLQTL---------------------------SKKVLGATK----------EKKF-------------HSLG------ 291 (939)
Q Consensus 270 --LlqtL---------------------------~kklm~~lk----------~kr~-------------~~~l------ 291 (939)
+...+ .-|+++.+- +.+. .++.
T Consensus 224 ~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~ 303 (938)
T KOG1077|consen 224 TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHS 303 (938)
T ss_pred hhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhh
Confidence 11111 111221110 0000 0000
Q ss_pred -chh--hhh---h---------hhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHH----HHHHHHHHhc-CC
Q 002304 292 -AAE--CFE---I---------SASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGE----ALNLLVDMLN-DD 351 (939)
Q Consensus 292 -~~d--~~~---l---------~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~----ALd~LvdmLn-De 351 (939)
++. .|+ + +-+.+|..|-..|.+-+..+|-=|.+++|+|... +|+.+ -.+.++..|+ +.
T Consensus 304 na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss--~~s~davK~h~d~Ii~sLkter 381 (938)
T KOG1077|consen 304 NAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS--EFSIDAVKKHQDTIINSLKTER 381 (938)
T ss_pred hhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc--cchHHHHHHHHHHHHHHhcccc
Confidence 000 021 1 1245677788888888889999999999998853 55543 3578888888 88
Q ss_pred CHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHH
Q 002304 352 SVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAAR 398 (939)
Q Consensus 352 ~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~ 398 (939)
|..||.+|+.-|-.|.+.++ .+..|.-++.-|...++.+|+.+.
T Consensus 382 DvSirrravDLLY~mcD~~N---ak~IV~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDVSN---AKQIVAELLQYLETADYSIREEIV 425 (938)
T ss_pred chHHHHHHHHHHHHHhchhh---HHHHHHHHHHHHhhcchHHHHHHH
Confidence 99999999999988885432 356788888889999999997653
No 93
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.24 E-value=0.0057 Score=45.52 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=25.1
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhh
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLK 177 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~ 177 (939)
+++.+.++++||++.||.+|+.+|+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999998864
No 94
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.20 E-value=0.73 Score=51.21 Aligned_cols=108 Identities=18% Similarity=0.136 Sum_probs=77.2
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhh----hhccc
Q 002304 151 TVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLI----ACIDE 226 (939)
Q Consensus 151 ~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~----~~~~~ 226 (939)
..+....+++|+.||+.|++.||-.+=- +.......++.+.+.++.+++.||..|++++..+--.+. .....
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Ll----d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLL----DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 4556899999999999999999976532 223445567788888877799999999999986654321 11110
Q ss_pred ccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc
Q 002304 227 KNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i 262 (939)
+..-.-......-+...+.+.+..||..|++.+.++
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 000011234556677889999999999999999997
No 95
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.21 Score=60.62 Aligned_cols=187 Identities=19% Similarity=0.099 Sum_probs=125.3
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-----Cc
Q 002304 192 CRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-----IS 266 (939)
Q Consensus 192 ~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-----vs 266 (939)
|.+-+.|+-.+..||..|+.++-.+=.+.-+.....+.-++.+.-|.-+-.+|+|+.+.||..|.+.+-++-. .+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 3456789999999999999998766543211110011223445567788999999999999999998887632 45
Q ss_pred HHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc--hhhHHHHHHHH
Q 002304 267 EIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS--EKFAGEALNLL 344 (939)
Q Consensus 267 ~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s--~~fA~~ALd~L 344 (939)
+..+...|.| +.+.+ =.|.-.+||.+..+-|-.+.... -.+-+..+|.|
T Consensus 257 ~~i~~~ll~k-I~d~~----------------------------a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal 307 (1005)
T KOG1949|consen 257 PTILIDLLKK-ITDEL----------------------------AFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPAL 307 (1005)
T ss_pred HHHHHHHHHH-HHHHh----------------------------hhccchheehhHhcCcHHHHcCccchhHHHHHHHhc
Confidence 5555444422 22111 13556699999999997776521 11335678888
Q ss_pred HHHhcCCCHHHHHHHHHHHhhhhhcccccch-hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC
Q 002304 345 VDMLNDDSVTVRLQALETMHIMVTCEHLNLE-DKHMHMFLGTLVDNSELVRCAARKILKLVKTP 407 (939)
Q Consensus 345 vdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~-E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~ 407 (939)
-..+.|..+.||.++..-|-+|.+...+.+- --.++.++..|+-++..|-+.....+=-+-+|
T Consensus 308 ~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP 371 (1005)
T KOG1949|consen 308 RYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLP 371 (1005)
T ss_pred chhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcC
Confidence 8899999999999999999999864322221 12356788888877777766665555443333
No 96
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.16 E-value=0.92 Score=51.08 Aligned_cols=195 Identities=21% Similarity=0.185 Sum_probs=117.3
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhhcccccc--hhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLKHVVFED--VDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNR 229 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~--~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~ 229 (939)
.....+.|-....|.+|+.++.++.......+ ..-...+...+.+.++=....=+..|+++++.+.-.+....+ .
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~---~ 123 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED---S 123 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc---H
Confidence 34455677779999999999988875433111 011233566677778766656677888888876543211111 1
Q ss_pred cccchhHHHHHHHhhcCCC--HHHHHHHHHHHhccc---CCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhh--h-hh
Q 002304 230 IDCSDVVFIQLCSMIRDMR--MEVRVEAFNALGKVG---MISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEI--S-AS 301 (939)
Q Consensus 230 i~lvddaf~aLc~aL~D~s--~~VR~~AA~ALG~i~---~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l--~-~s 301 (939)
-.+..+....|...+.|.+ ..+|.+++.+||-+. ....+-+.+++. .|..+ |.. . ..
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~i-------------f~~~~~~~~ 188 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESI-------------FLLSILKSD 188 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHH-------------HHHHhcCcC
Confidence 1233567778888888876 478899999999863 333333332111 11100 000 0 00
Q ss_pred cchHHHhhccCCCcHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 302 AAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEK-----FAGEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 302 ~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~-----fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
+.. +.+.. .+...|..+|+.+.|-|...-+. ....+++.|.++|+.++..||.+|-++|.=|-
T Consensus 189 ~~~-~~~~~--~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 189 GNA-PVVAA--EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCc-ccccC--CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 000 01111 23458889999998887743322 33567888999999999999999998888654
No 97
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.12 E-value=0.15 Score=61.08 Aligned_cols=242 Identities=15% Similarity=0.151 Sum_probs=162.4
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhhccccc-chhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccccc
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLKHVVFE-DVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRI 230 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i 230 (939)
.+.+.+...||.|--.-+.|+..|...--+- -+--..+++|.+.-.|+.....|-...+..+|.++.-...-.. .-
T Consensus 650 iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~---~r 726 (975)
T COG5181 650 ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG---VR 726 (975)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC---HH
Confidence 4567788999999999999988876532110 0112356788888899999999999999999998863211000 00
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccc-cchhhhhh-----hhhcc
Q 002304 231 DCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSL-GAAECFEI-----SASAA 303 (939)
Q Consensus 231 ~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~-l~~d~~~l-----~~s~a 303 (939)
.|.. .-=.|..+|.--+..+|++|-..+|-| +.+++.-++.+ +++++|-...+.- .++-.+.+ +.=.+
T Consensus 727 EWMR-IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~----LlnnLkvqeRq~RvctsvaI~iVae~cgpfsV 801 (975)
T COG5181 727 EWMR-ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDI----LLNNLKVQERQQRVCTSVAISIVAEYCGPFSV 801 (975)
T ss_pred HHHH-HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHH----HHhcchHHHHHhhhhhhhhhhhhHhhcCchhh
Confidence 0111 112467889999999999999999999 55665554444 4555543221110 11100111 11235
Q ss_pred hHHHhhccCCCcHHHHHHHHHHHHhc----cccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchh---
Q 002304 304 AGTFVHGFEDEFYEVRKSACSSLGSL----VILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLED--- 376 (939)
Q Consensus 304 ~gaLI~~LeDE~~eVR~aAaeALGkL----~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E--- 376 (939)
+|++..--+-++..|......|+|-+ +..+.++.....|.|.|++.|++..=|.-|++.+..|+-.-.-+-.|
T Consensus 802 lP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~ 881 (975)
T COG5181 802 LPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAA 881 (975)
T ss_pred HHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHH
Confidence 77888888999999999999999653 44444555667899999999999999999999999997411111223
Q ss_pred -hHHHHHHHhcCCCCHHHHHHHHHHH
Q 002304 377 -KHMHMFLGTLVDNSELVRCAARKIL 401 (939)
Q Consensus 377 -~aL~~LL~~L~D~~~dVR~aA~~aL 401 (939)
..++.|....-|++|.|-.+..+-+
T Consensus 882 IHLlNllwpNIle~sPhvi~~~~Eg~ 907 (975)
T COG5181 882 IHLLNLLWPNILEPSPHVIQSFDEGM 907 (975)
T ss_pred HHHHHHhhhhccCCCcHHHHHHHHHH
Confidence 3456666677899999988877633
No 98
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.31 Score=60.47 Aligned_cols=202 Identities=20% Similarity=0.193 Sum_probs=124.6
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
.+-.+.....++||-+-+|..|+..|..+......-+.-.-+.++..+...|+|+|+.|=+.|++++..+.+++.
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~----- 800 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP----- 800 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----
Confidence 334455566799999999999999999987732211111224467888999999999999999998887776531
Q ss_pred ccccccchhHHHHHHHh---hcCCC-HHHHHHHHHHHhcc----cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhh
Q 002304 227 KNRIDCSDVVFIQLCSM---IRDMR-MEVRVEAFNALGKV----GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEI 298 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~a---L~D~s-~~VR~~AA~ALG~i----~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l 298 (939)
.+.++.+..- .++.. ..-|....++++++ |.....+.
T Consensus 801 -------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~---------------------------- 845 (982)
T KOG4653|consen 801 -------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK---------------------------- 845 (982)
T ss_pred -------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH----------------------------
Confidence 2223333220 01111 11222222333332 11111111
Q ss_pred hhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc----hhhHHHHHHHHHH-HhcCCCHHHHHHHHHHHhhhhhccccc
Q 002304 299 SASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS----EKFAGEALNLLVD-MLNDDSVTVRLQALETMHIMVTCEHLN 373 (939)
Q Consensus 299 ~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s----~~fA~~ALd~Lvd-mLnDe~~~VRl~Aa~ALgkI~~~~~i~ 373 (939)
.-.+..|..+..|++.+-|.++...+|++-... .++..+++-.++. .-.|....||++|+.-+..+-. .
T Consensus 846 --~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~----~ 919 (982)
T KOG4653|consen 846 --AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN----G 919 (982)
T ss_pred --HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh----c
Confidence 123557999999999999999999998876421 1234455555444 3458899999999999988753 1
Q ss_pred chhhHHHHHHHhcCCCCHHHH
Q 002304 374 LEDKHMHMFLGTLVDNSELVR 394 (939)
Q Consensus 374 l~E~aL~~LL~~L~D~~~dVR 394 (939)
+.++.+|.+-..+.|.....+
T Consensus 920 tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 920 TGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred cchhhHHHHHHHHHHHHHHHH
Confidence 235677766555555554444
No 99
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.37 Score=56.75 Aligned_cols=248 Identities=14% Similarity=-0.000 Sum_probs=138.1
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
++..+.....||+.-+|+.|+..|+......-..-.+-..-++...+..| .|.+.+|=.+|+..|-......... +
T Consensus 259 ~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~---~ 335 (533)
T KOG2032|consen 259 VLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND---D 335 (533)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc---c
Confidence 44566678899999999999999998864310000011122334444444 6778999999999998765432111 1
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCC-----cHHHHHHHhhHH--Hhhhhhhhhhccccch-----hh
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMI-----SEIVLLQTLSKK--VLGATKEKKFHSLGAA-----EC 295 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~v-----s~~~LlqtL~kk--lm~~lk~kr~~~~l~~-----d~ 295 (939)
-...+ -++...+..+..|++..+|.+|...+|.+..+ -..+..|+.... ++.++.... ++.++ .+
T Consensus 336 l~~~~-l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~--p~va~ACr~~~~ 412 (533)
T KOG2032|consen 336 LESYL-LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN--PYVARACRSELR 412 (533)
T ss_pred hhhhc-hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC--hHHHHHHHHHHH
Confidence 01111 23556788999999999999999999987332 233433332100 111110000 00000 00
Q ss_pred h---hhhhhcchHHHhhccCCCcHHHHHHHHHHH--HhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhc-
Q 002304 296 F---EISASAAAGTFVHGFEDEFYEVRKSACSSL--GSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC- 369 (939)
Q Consensus 296 ~---~l~~s~a~gaLI~~LeDE~~eVR~aAaeAL--GkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~- 369 (939)
+ ++.-.... ++.....|.+.- |..+-+.= -++....+++..-+.+...-.++-.-+.||..|..--+..-..
T Consensus 413 ~c~p~l~rke~~-~~~q~~ld~~~~-~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l 490 (533)
T KOG2032|consen 413 TCYPNLVRKELY-HLFQESLDTDMA-RFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSL 490 (533)
T ss_pred hcCchhHHHHHH-HHHhhhhHHhHH-HHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHh
Confidence 0 00001111 222222255544 44444332 1233345666666777777788888889998887766655420
Q ss_pred ---c-cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 370 ---E-HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 370 ---~-~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
. ...-.+.....+-....|+.|+|++.+++|++..
T Consensus 491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l 529 (533)
T KOG2032|consen 491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLL 529 (533)
T ss_pred HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhH
Confidence 0 0001123335566678899999999999988763
No 100
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.95 E-value=0.19 Score=60.09 Aligned_cols=201 Identities=20% Similarity=0.142 Sum_probs=118.5
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccc
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRID 231 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~ 231 (939)
-++..+..+|-.||.-.+.-|..+.+.--..+..+.+.+...+.+.+-|..+.||++|+.+|..+-.+.. ++ +
T Consensus 95 h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~--ne---e-- 167 (885)
T COG5218 95 HLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL--NE---E-- 167 (885)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC--Ch---H--
Confidence 4456788999999999999999888754324567777788888888999999999999999999875321 11 1
Q ss_pred cchhHHHHHHHhh-cCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhh---hhhccccchhhhhhhhhcchHHH
Q 002304 232 CSDVVFIQLCSMI-RDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKE---KKFHSLGAAECFEISASAAAGTF 307 (939)
Q Consensus 232 lvddaf~aLc~aL-~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~---kr~~~~l~~d~~~l~~s~a~gaL 307 (939)
++...-|...+ +||+..||..|---+.-=.+.-+=+|+.+-+ +-.+.|+ .|..+..+.-.+--++.... .+
T Consensus 168 --n~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarD--v~~anRr~vY~r~Lp~iGd~~~lsi~kri~-l~ 242 (885)
T COG5218 168 --NRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARD--VSGANRRMVYERCLPRIGDLKSLSIDKRIL-LM 242 (885)
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhh--hhHHHHHHHHHHHhhhhcchhhccccceeh-hh
Confidence 22233344444 8999999998855443322222223332211 1111111 11111111000100112222 45
Q ss_pred hhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 308 VHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 308 I~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
--||+|-+..||.++++++..-=....+ ..++. |...+.-....|-.+|++++-.-.
T Consensus 243 ewgl~dRe~sv~~a~~d~ia~~w~~~~d--~~lve-Lle~lDvSr~sv~v~aik~~F~~R 299 (885)
T COG5218 243 EWGLLDREFSVKGALVDAIASAWRIPED--LRLVE-LLEFLDVSRRSVLVAAIKGVFEKR 299 (885)
T ss_pred hhcchhhhhhHHHHHHHHHHHHhccccc--ccHHH-HHHHHhhhhHHHHHHHHHHHHhhc
Confidence 5789999999999999999652211100 12222 334444455568888888887654
No 101
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.2 Score=61.45 Aligned_cols=243 Identities=18% Similarity=0.148 Sum_probs=125.6
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
...++.-+-..+.+-+.||--.|+.+...+...... .+. .....+.-++.-....+|.+|++.|.+.+...+.
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~-pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~--- 315 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA-PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ--- 315 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc-hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc---
Confidence 345566666777777888888888887766543210 111 1234455566778888888888888877653211
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCC-cHHHHHHHhhHHHhhhhhh--h-------hh---ccccc
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMI-SEIVLLQTLSKKVLGATKE--K-------KF---HSLGA 292 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~v-s~~~LlqtL~kklm~~lk~--k-------r~---~~~l~ 292 (939)
.+.-.=..|-.+++|.+..+-.-|.-.|=+-|.. +-+-|-+.... .+.++-. | +. ...+.
T Consensus 316 ------~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~-fv~disDeFKivvvdai~sLc~~fp~k 388 (865)
T KOG1078|consen 316 ------AVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISS-FVSDISDEFKIVVVDAIRSLCLKFPRK 388 (865)
T ss_pred ------cccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHH-HHHhccccceEEeHHHHHHHHhhccHH
Confidence 1111112355677888877777777777666552 22222111111 1111100 0 00 00000
Q ss_pred hh--------------hhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcccc--chhhH-----------------HH
Q 002304 293 AE--------------CFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL--SEKFA-----------------GE 339 (939)
Q Consensus 293 ~d--------------~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~--s~~fA-----------------~~ 339 (939)
+. .|+. ....+++++...++ .++-|..+...||..--. ...++ .+
T Consensus 389 ~~~~m~FL~~~Lr~eGg~e~-K~aivd~Ii~iie~-~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Psk 466 (865)
T KOG1078|consen 389 HTVMMNFLSNMLREEGGFEF-KRAIVDAIIDIIEE-NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSK 466 (865)
T ss_pred HHHHHHHHHHHHHhccCchH-HHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcch
Confidence 00 0111 12234455554441 223344444444332210 00000 11
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 340 ALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 340 ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
=+.++....-=|+..||.+|..||.|+| .+...+.....-.+...+.|.+.+||.+|..+|..+.
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg-~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFG-AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHh-cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 2233344444466778888888888888 3555566666667777888888888888877776654
No 102
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.3 Score=61.81 Aligned_cols=191 Identities=17% Similarity=0.201 Sum_probs=115.9
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhcc
Q 002304 233 SDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGF 311 (939)
Q Consensus 233 vddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~L 311 (939)
+..+++.|-.+++|.+-.||+.||+.+|++.. .+.+...++++. .++ +..-.
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~s--------------------------vid-~~~p~ 391 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGS--------------------------VID-LFNPA 391 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHH--------------------------HHH-hcCcC
Confidence 34567789999999999999999999999955 454443333211 111 22223
Q ss_pred C-CCcHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHhcCCCH--------HHHHHHHHHHhhhhhcc-cccchh--
Q 002304 312 E-DEFYEVRKSACSSLGSLVIL---SEKFAGEALNLLVDMLNDDSV--------TVRLQALETMHIMVTCE-HLNLED-- 376 (939)
Q Consensus 312 e-DE~~eVR~aAaeALGkL~~~---s~~fA~~ALd~LvdmLnDe~~--------~VRl~Aa~ALgkI~~~~-~i~l~E-- 376 (939)
| |..|. .|+-+|++++.. -|..-...+|.++..+.=+.. +||=+|...++-++-.+ +-.+..
T Consensus 392 e~~~aWH---gacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l 468 (1133)
T KOG1943|consen 392 EDDSAWH---GACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL 468 (1133)
T ss_pred CchhHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH
Confidence 3 44454 888888887742 233335677888777765554 59999988888776422 111111
Q ss_pred --hHHHHHHHhcCCCCHHHHHHHHHHHhhc-c-CCch-hHHHHHHHHHHHhhccCc-cchHHHHHHHHHhhcccccchHH
Q 002304 377 --KHMHMFLGTLVDNSELVRCAARKILKLV-K-TPKL-EFFRLFIDGLLENLKIYP-QDEADVFSVLFFIGRSHGNFAAC 450 (939)
Q Consensus 377 --~aL~~LL~~L~D~~~dVR~aA~~aLg~i-~-l~~~-~~l~~~l~~LL~~L~~~p-eDr~~I~~aL~~LG~~H~~lv~~ 450 (939)
=+-..+..++=|..-++|+||..|+.+. | .++. -| -.|+.+.+-+. .+|..=|..+..--+..+.+.++
T Consensus 469 ~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~G-----i~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~ 543 (1133)
T KOG1943|consen 469 QSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHG-----ISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREP 543 (1133)
T ss_pred HHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCc-----hhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHH
Confidence 1223466788899999999999888653 2 1221 12 12333333332 23554455555544555677777
Q ss_pred HHHHHhhh
Q 002304 451 IIKEVCQE 458 (939)
Q Consensus 451 lv~~Ll~~ 458 (939)
++++++..
T Consensus 544 ~f~~L~t~ 551 (1133)
T KOG1943|consen 544 VFNHLLTK 551 (1133)
T ss_pred HHHHHHhc
Confidence 77777664
No 103
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.91 E-value=0.047 Score=70.43 Aligned_cols=114 Identities=16% Similarity=0.050 Sum_probs=86.3
Q ss_pred ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhc
Q 002304 145 RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
+-+..+..|+..++.+-+.||..|+++|..+....-.. -..++.-..+...+.|...+||.+|++.+|.+--..
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~---- 886 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI---- 886 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc----
Confidence 34556778888999999999999999999997643100 011223445567799999999999999999765321
Q ss_pred ccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHH
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIV 269 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~ 269 (939)
..++..-++.|...+.|....||+.|.+.|.+|....+++
T Consensus 887 -----~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 887 -----PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred -----HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 1234667889999999999999999999999997644443
No 104
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.89 E-value=0.073 Score=59.03 Aligned_cols=113 Identities=18% Similarity=0.124 Sum_probs=89.9
Q ss_pred hccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cccc-----------cchh
Q 002304 309 HGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEHL-----------NLED 376 (939)
Q Consensus 309 ~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~i-----------~l~E 376 (939)
-++.-.+..||..|++.||-.+.-+.++|.+.++.+...++.+++.||..|++++..+.. +|.. ....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 677778889999999999999988889999999999999988899999999999999874 2211 1123
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHH-HHHHHHHHH
Q 002304 377 KHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFF-RLFIDGLLE 421 (939)
Q Consensus 377 ~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l-~~~l~~LL~ 421 (939)
..++.+...|+++++++|..+.+.+.++-+.....- ..++..|+-
T Consensus 114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll 159 (298)
T PF12719_consen 114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLL 159 (298)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 577899999999999999999998888655544443 445555543
No 105
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.80 E-value=0.58 Score=56.76 Aligned_cols=209 Identities=18% Similarity=0.095 Sum_probs=128.6
Q ss_pred hhhcCCCHHHHHHHHHHHHhhhhcccccchhh-hhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccc
Q 002304 155 GLTKDPYPYVREAALNGLVCLLKHVVFEDVDL-IQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCS 233 (939)
Q Consensus 155 ~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l-~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lv 233 (939)
...-.-|..+++||+..+..+.-....++.++ .......++++|.|++-.|--.+..++.-+--.+.+... -.+.
T Consensus 384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~ks----kfl~ 459 (678)
T KOG1293|consen 384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKS----KFLR 459 (678)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHH----HHHH
Confidence 34445577899999887765542110000000 112456788889999999998888777654332211110 1122
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC
Q 002304 234 DVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE 312 (939)
Q Consensus 234 ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le 312 (939)
...+..|..++.|++..+|..+-++|...-- -.+....+++.|-- ..-++...+
T Consensus 460 ~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~-------------------------a~~i~~l~n 514 (678)
T KOG1293|consen 460 NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIP-------------------------ANLILDLIN 514 (678)
T ss_pred cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhh-------------------------HHHHHHHHh
Confidence 3456789999999999999999999988732 33444444443211 112445668
Q ss_pred CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHH
Q 002304 313 DEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSEL 392 (939)
Q Consensus 313 DE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~d 392 (939)
|++|+|...+-.-|..+...+ .+.+|+|+++..|....+=+.- +++....+... -....+.++.--+-.
T Consensus 515 d~d~~Vqeq~fqllRNl~c~~----~~svdfll~~~~~~ld~i~l~l-----k~a~~~pi~ie--~~~~~~~l~~~~d~~ 583 (678)
T KOG1293|consen 515 DPDWAVQEQCFQLLRNLTCNS----RKSVDFLLEKFKDVLDKIDLQL-----KIAIGSPILIE--FLAKKMRLLNPLDTQ 583 (678)
T ss_pred CCCHHHHHHHHHHHHHhhcCc----HHHHHHHHHhhhHHHHHHHHHH-----hhccCCceehh--hHHHHHHhccchhHH
Confidence 999999999999999998764 5799999999999877665443 66643334333 333333333333344
Q ss_pred HHHHHHHHHhh
Q 002304 393 VRCAARKILKL 403 (939)
Q Consensus 393 VR~aA~~aLg~ 403 (939)
-|++....++.
T Consensus 584 ~~~am~~~fk~ 594 (678)
T KOG1293|consen 584 QKKAMEGIFKI 594 (678)
T ss_pred HHHHHHHHHHH
Confidence 45444444333
No 106
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.80 E-value=0.066 Score=62.52 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcccc--------chhhHHHHHHHHHHH-hcCCCHHHHHHHHHHHhhhhhcccccch-----hhHHHH
Q 002304 316 YEVRKSACSSLGSLVIL--------SEKFAGEALNLLVDM-LNDDSVTVRLQALETMHIMVTCEHLNLE-----DKHMHM 381 (939)
Q Consensus 316 ~eVR~aAaeALGkL~~~--------s~~fA~~ALd~Lvdm-LnDe~~~VRl~Aa~ALgkI~~~~~i~l~-----E~aL~~ 381 (939)
+.||..|+++||.+..- ..++.+.++..+++. .--...-||++|-.|+|++-.+..+.++ ....++
T Consensus 498 dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 37999999999987631 000111111112111 1122446999999999999764444333 356677
Q ss_pred HHHhcC-CCCHHHHHHHHHHHhhccC
Q 002304 382 FLGTLV-DNSELVRCAARKILKLVKT 406 (939)
Q Consensus 382 LL~~L~-D~~~dVR~aA~~aLg~i~l 406 (939)
|+.++. ..|-.||-.|+.+|..-+-
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCCC
Confidence 777776 4677888888888877553
No 107
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=0.1 Score=66.31 Aligned_cols=179 Identities=17% Similarity=0.126 Sum_probs=129.2
Q ss_pred hHHHhhcc----CCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhhcccccchhhH
Q 002304 304 AGTFVHGF----EDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLN-DDSVTVRLQALETMHIMVTCEHLNLEDKH 378 (939)
Q Consensus 304 ~gaLI~~L----eDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLn-De~~~VRl~Aa~ALgkI~~~~~i~l~E~a 378 (939)
+|-++.+. .-.+++.+.||--|||++-.-+.+|-...++.|+.+++ .+++-||.+++-|||.++..- =++-|..
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~f-pnlie~~ 999 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF-PNLIEPW 999 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc-ccccchh
Confidence 44444444 23347999999999999999899999999999999998 899999999999999999632 2345778
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhcc-CccchHHHHHHHHHhhcccccchHHHHHHHhh
Q 002304 379 MHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKI-YPQDEADVFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 379 L~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~-~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
-+-+.+.|.|+++.||+.+--.|.-.-+++-.-++.-+-.+.-+|.+ .++-+..+..-.+.|.++. +.+-.+.|+++.
T Consensus 1000 T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~ 1078 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILS 1078 (1251)
T ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHH
Confidence 89999999999999999998888766555544444445555555543 2233444444455565553 666667777776
Q ss_pred hcCCCCCCCCCCCchhHHHHHHHHhhccccCc
Q 002304 458 EIEPDSDDKLGFDNARVAAFLVLAISVPLSCE 489 (939)
Q Consensus 458 ~i~p~~~~e~~~dd~~yiA~Lili~~A~~s~~ 489 (939)
+. .+ +.++...|--++-.+++--+.++
T Consensus 1079 ~L---s~--~~l~~~~~~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1079 RL---SN--GNLEEESYKTVMEFLIGLIKKDE 1105 (1251)
T ss_pred hh---cc--CcccchhhHHHHHHHHHHhcccc
Confidence 53 22 37778888888777777666554
No 108
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.78 E-value=1.7 Score=52.33 Aligned_cols=286 Identities=16% Similarity=0.151 Sum_probs=176.7
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCc-hHHHHHHHHHHHhcchhhhhccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHED-CVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~-~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
.+-...+..++.+.|+.-.+|+..++.|..-.. +.+++++++....+...|+++ .+..+++..+|..-....+
T Consensus 94 qvK~~al~aL~s~epr~~~~Aaql~aaIA~~El--p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P---- 167 (858)
T COG5215 94 QVKGMALRALKSPEPRFCTMAAQLLAAIARMEL--PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP---- 167 (858)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhC--ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH----
Confidence 444566788999999999999999999986543 446667777777888888876 5788888888876543211
Q ss_pred ccccccchhHHHHHHHh--hcCCCHHHHHHHHHHHhcc-----cCCc----HHHHHHHhhHHHhhhhhhhhhccccch-h
Q 002304 227 KNRIDCSDVVFIQLCSM--IRDMRMEVRVEAFNALGKV-----GMIS----EIVLLQTLSKKVLGATKEKKFHSLGAA-E 294 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~a--L~D~s~~VR~~AA~ALG~i-----~~vs----~~~LlqtL~kklm~~lk~kr~~~~l~~-d 294 (939)
..-+...+.++-++|.- =+..+..||-+|-++|.+- ++.. -+++.|..-..--.+ +...++ ++ +
T Consensus 168 e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~--d~e~q~--aafg 243 (858)
T COG5215 168 EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGN--DEELQH--AAFG 243 (858)
T ss_pred HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCC--cHHHHH--HHHH
Confidence 11122234556666653 3688999999999999771 1110 111111110000000 000000 00 0
Q ss_pred ---h-----hh----hhhhcchHHHhhccCCCcHHHHHHHHHHHHhcc---------c--------cchhhH----HHHH
Q 002304 295 ---C-----FE----ISASAAAGTFVHGFEDEFYEVRKSACSSLGSLV---------I--------LSEKFA----GEAL 341 (939)
Q Consensus 295 ---~-----~~----l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~---------~--------~s~~fA----~~AL 341 (939)
+ +. .|.........+.....+.+|...|++=...+- . .+-.|| ...+
T Consensus 244 Cl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvl 323 (858)
T COG5215 244 CLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVL 323 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHH
Confidence 0 11 112222233445667777788888887652211 1 122344 3456
Q ss_pred HHHHHHhc-------CCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc-cCCchhHHH
Q 002304 342 NLLVDMLN-------DDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV-KTPKLEFFR 413 (939)
Q Consensus 342 d~LvdmLn-------De~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i-~l~~~~~l~ 413 (939)
|.|+.+|. |++|.+-++|...|.-.+..-...+-+..+..+-..+..+++.=|+++.-++|.+ .-++..++-
T Consensus 324 P~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT 403 (858)
T COG5215 324 PELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLT 403 (858)
T ss_pred HHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHH
Confidence 88888775 4789999999999988774221122223445555678899999999999999987 456788888
Q ss_pred HHHHHHHHhhccCccc-----hHHHHHHHHHhhcc
Q 002304 414 LFIDGLLENLKIYPQD-----EADVFSVLFFIGRS 443 (939)
Q Consensus 414 ~~l~~LL~~L~~~peD-----r~~I~~aL~~LG~~ 443 (939)
..+..+++.+...-.| +....||+++|...
T Consensus 404 ~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 404 KIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 8888888765554333 56778999999753
No 109
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.70 E-value=0.025 Score=68.49 Aligned_cols=180 Identities=19% Similarity=0.182 Sum_probs=133.3
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
.++..+.++++-+|-.||-.=+..+.+..+.-. ++-+-..+||.+...+.|.++.+|..+++.+..+...+...
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~---- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR---- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh----
Confidence 367788899999999999999988887765421 22344568999999999999999999999999888765322
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHH
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTF 307 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaL 307 (939)
.+-.+.+..+...-.|....+|..--.-||+|+....... + ..-.+-||
T Consensus 404 ---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~-------------R---------------~~vL~~af 452 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV-------------R---------------KRVLASAF 452 (690)
T ss_pred ---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh-------------h---------------ccccchhh
Confidence 1224555666666679999999999999999986321110 0 12234589
Q ss_pred hhccCCCcHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 002304 308 VHGFEDEFYEVRKSACSSLGSLVIL--SEKFAGEALNLLVDMLNDDSVTVRLQALETMH 364 (939)
Q Consensus 308 I~~LeDE~~eVR~aAaeALGkL~~~--s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALg 364 (939)
.++|+|++.-=|.+++.+++..... ..+.|.+.+|.+.-..-|++..||-.|-.++.
T Consensus 453 tralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 453 TRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred hhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHH
Confidence 9999999999999999999876642 33456677777777777777777776655554
No 110
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.61 E-value=0.81 Score=53.23 Aligned_cols=205 Identities=15% Similarity=0.087 Sum_probs=134.4
Q ss_pred hhHHHHHHHhhcCCchHHHHHHhhh----ccccCCCh--hhHHHHHHhhh-cCCCHHHHHHHHHHHHhhhhcccccchhh
Q 002304 114 TVDDRFFVSLCFASSVSVRLWLLRN----AERFNVRP--HLLFTVCLGLT-KDPYPYVREAALNGLVCLLKHVVFEDVDL 186 (939)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~--~~L~~~L~~ll-~D~Dp~VRraAl~AL~~L~~~~~~~~~~l 186 (939)
.+.+.+..+.+-+.....|.+.++- .-|+.-++ +.+++.+.... ...++.-|..+++.+.=+...-+.-....
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~ 268 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL 268 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch
Confidence 4556666666666655677776653 11322221 23333333333 56677888888888765554211111123
Q ss_pred hhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhh----hcccc----cccccchhHHHHHHHhhcCCCHHHHHHHHHH
Q 002304 187 IQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIA----CIDEK----NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNA 258 (939)
Q Consensus 187 ~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~----~~~~~----~~i~lvddaf~aLc~aL~D~s~~VR~~AA~A 258 (939)
...+...++++|.| +.+...|+++++.+-..... .+... .+.|.-...+..|.+..++.+..+|..--.|
T Consensus 269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~A 346 (415)
T PF12460_consen 269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Confidence 34567888999988 88999999999988654211 11111 2445556788889999888888899999999
Q ss_pred Hhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH
Q 002304 259 LGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA 337 (939)
Q Consensus 259 LG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA 337 (939)
|..+ +++|..++.+-+ +...|-++++|.=++.+||.++.+.|-.+....++..
T Consensus 347 Ls~ll~~vP~~vl~~~l--------------------------~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPEL--------------------------PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHhhCCHHHHHHHH--------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 9998 888877765433 3356788999988888999999999988776666655
Q ss_pred HHHHHHHHH
Q 002304 338 GEALNLLVD 346 (939)
Q Consensus 338 ~~ALd~Lvd 346 (939)
.+-++.|+.
T Consensus 401 ~~hl~sLI~ 409 (415)
T PF12460_consen 401 SEHLSSLIP 409 (415)
T ss_pred HHHHHHHHH
Confidence 544444443
No 111
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=95.59 E-value=0.015 Score=42.67 Aligned_cols=30 Identities=37% Similarity=0.401 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC
Q 002304 316 YEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD 351 (939)
Q Consensus 316 ~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe 351 (939)
|.||.+|+++||+++. .++++.|++.++|+
T Consensus 1 ~~vR~~aa~aLg~~~~------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLGD------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcCC------HhHHHHHHHHhcCC
Confidence 5788899999998875 46888888888875
No 112
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=1.6 Score=57.41 Aligned_cols=390 Identities=16% Similarity=0.127 Sum_probs=209.9
Q ss_pred hcCCCCChhhHHHHHHHHhhhc--------------------CCCCCCchhhHHHHHHhhcccccCCCCcchhhhhhh--
Q 002304 31 INNPNTSNSTLSSLLETLTRSL--------------------QLTDSDSLTRHHELTLLAGLSLRHPHFSPLISNSLR-- 88 (939)
Q Consensus 31 ~~~~~t~~~~~~~~~~~~t~~~--------------------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~-- 88 (939)
|=+..--.+-++++++|||+.- .+|...++|..-.+.|=+|+.. | -+||.=.-
T Consensus 891 lgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q--P---dLVYKFM~LA 965 (1702)
T KOG0915|consen 891 LGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ--P---DLVYKFMQLA 965 (1702)
T ss_pred cCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC--h---HHHHHHHHHh
Confidence 3344444567889999999732 1222236778888888887642 1 22332221
Q ss_pred ---hccccccccchhhHHHHhhh--ccCCc--hhHHHHHHHhhcCCchH-----HHHHHhhhccccCCC---hhhHHHHH
Q 002304 89 ---SNSLLFSSYSPRLAAAAALA--VISDH--TVDDRFFVSLCFASSVS-----VRLWLLRNAERFNVR---PHLLFTVC 153 (939)
Q Consensus 89 ---~~~~~~~~~~~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~---~~~L~~~L 153 (939)
-+--|-.-..-++.++++=| +.-|+ .|.-|||+- =|.+..- -..|-.-=.+.-.+= -.++++.+
T Consensus 966 nh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 966 NHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 00011111112677776666 44444 777777764 3666664 234533222211110 12455566
Q ss_pred HhhhcCCCHHHHHHHHHHHHhhhhccccc-chhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccccccc
Q 002304 154 LGLTKDPYPYVREAALNGLVCLLKHVVFE-DVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDC 232 (939)
Q Consensus 154 ~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~l 232 (939)
+.-+.+..-+||.++--||.++-+..-.. -..-..++|..+.+...|=.++||.+|=++...+++..+..-+..+ .--
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~-~~~ 1123 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN-GAK 1123 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-ccc
Confidence 66788888999999999999997643211 0122357899999999999999999999988888876433211110 000
Q ss_pred chhHHHHHHHhhc-----CCCHHHHHHHHHHHhcccCCcHHHHHHHh---hHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 233 SDVVFIQLCSMIR-----DMRMEVRVEAFNALGKVGMISEIVLLQTL---SKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 233 vddaf~aLc~aL~-----D~s~~VR~~AA~ALG~i~~vs~~~LlqtL---~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
...++..+...|= ..-..||+.+...+-++-..+...|.+-+ ..-+++...+ +.+.+.
T Consensus 1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~--------------lE~~vL 1189 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE--------------LEPQVL 1189 (1702)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc--------------cchHHH
Confidence 1233444444333 45678999999998888443333332211 1112221111 122333
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhcccc-chhh--HHHHHHHH-HHHhcCCCHHH------------HHHHHHHHhhhhh
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVIL-SEKF--AGEALNLL-VDMLNDDSVTV------------RLQALETMHIMVT 368 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~-s~~f--A~~ALd~L-vdmLnDe~~~V------------Rl~Aa~ALgkI~~ 368 (939)
..+.-.+ .+.-.+|++.+..-+.+ +|-+ ..++++.+ ..+|.+-.+.| |..++.-+.-+..
T Consensus 1190 nYls~r~----~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~ 1265 (1702)
T KOG0915|consen 1190 NYLSLRL----INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQ 1265 (1702)
T ss_pred HHHHHhh----hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHH
Confidence 3343333 34455666666443332 2221 12222222 11222222211 1222222222221
Q ss_pred ---cccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHhhccCccc-hHHHHHHHHHhhcc
Q 002304 369 ---CEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV-KTPKLEFFRLFIDGLLENLKIYPQD-EADVFSVLFFIGRS 443 (939)
Q Consensus 369 ---~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i-~l~~~~~l~~~l~~LL~~L~~~peD-r~~I~~aL~~LG~~ 443 (939)
.+......+.+.+++-.++|.++.||++.+.|-|.. +.......+.+++.++.-+-..-++ ++.....+.+|++.
T Consensus 1266 r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1266 RLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANY 1345 (1702)
T ss_pred HhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHh
Confidence 011113357888999999999999999999999886 6667768888888888633222222 34444444447755
Q ss_pred cc
Q 002304 444 HG 445 (939)
Q Consensus 444 H~ 445 (939)
|+
T Consensus 1346 s~ 1347 (1702)
T KOG0915|consen 1346 SQ 1347 (1702)
T ss_pred hH
Confidence 43
No 113
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=1.1 Score=54.90 Aligned_cols=178 Identities=19% Similarity=0.082 Sum_probs=118.5
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhh---ccc--ccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchh---hhh
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLK---HVV--FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKML---IAC 223 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~---~~~--~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~---~~~ 223 (939)
.+..-++-++..||..|+.-+.++.. +.. ..-.++.+.-+..+-.+|+|+.++||..|++.+.+.-..+ ++.
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 44568899999999999998887643 211 0011233333455678999999999999999887543221 222
Q ss_pred cccccccccchhHHHHHHH-hhcCCCHHHHHHHHHHHhcccCC--cHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhh
Q 002304 224 IDEKNRIDCSDVVFIQLCS-MIRDMRMEVRVEAFNALGKVGMI--SEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA 300 (939)
Q Consensus 224 ~~~~~~i~lvddaf~aLc~-aL~D~s~~VR~~AA~ALG~i~~v--s~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~ 300 (939)
+ .+-+.+.++.. +..|.+..||....+.|..|-.. +-..|++.
T Consensus 258 ~-------i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~--------------------------- 303 (1005)
T KOG1949|consen 258 T-------ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQL--------------------------- 303 (1005)
T ss_pred H-------HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHH---------------------------
Confidence 1 22455566655 55799999999999999999553 33344433
Q ss_pred hcchHHHhhccCCCcHHHHHHHHHHHHhccccch-hhH-HHHHHHHHHHhcCCCHHHHHHHHHHHhhh
Q 002304 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE-KFA-GEALNLLVDMLNDDSVTVRLQALETMHIM 366 (939)
Q Consensus 301 s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~-~fA-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI 366 (939)
.+++=++|.|.--.||.|+++-|-++.+... .|- .-.+|.++..|.-++..|-..-+.-+..+
T Consensus 304 ---Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 304 ---LPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNS 368 (1005)
T ss_pred ---HHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2467778899999999999999988875211 110 11256777777777777766655555544
No 114
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.42 E-value=4.2 Score=47.20 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=91.9
Q ss_pred hhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhH
Q 002304 299 SASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKH 378 (939)
Q Consensus 299 ~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~a 378 (939)
++..|++|-....+|++-.||..|+.-|-.+... ++..+..|.|+.+|| ......-++++.. +...++|.+
T Consensus 58 la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLn------k~sl~~Lf~~~~~-~D~~irek~ 128 (460)
T KOG2213|consen 58 LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLN------KASLTGLFGQIEV-GDEQIREKV 128 (460)
T ss_pred hhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHH------HHHHHHHHhhhhh-hhHHHHHHH
Confidence 3567888999999999999999999999887754 555788899999999 2333333445544 445555666
Q ss_pred HHHHHHhcCCCCHHH------HHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhc--ccccchHH
Q 002304 379 MHMFLGTLVDNSELV------RCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGR--SHGNFAAC 450 (939)
Q Consensus 379 L~~LL~~L~D~~~dV------R~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~--~H~~lv~~ 450 (939)
++-|..-+-+--++| |..+.++-+.+..-+.+.+.++++ +...++-+|. .|.++
T Consensus 129 l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~---------------~L~~lk~~~~k~~~a~l--- 190 (460)
T KOG2213|consen 129 LKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMD---------------ILASLKSLQTKAGEARL--- 190 (460)
T ss_pred HHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHH---------------HHHhhhcccCCCCHHHH---
Confidence 655554443333332 222222222233333333333322 2333333431 12222
Q ss_pred HHHHHhhhcCCCCC-CCCCCCchhHHHHHHHHhhccc
Q 002304 451 IIKEVCQEIEPDSD-DKLGFDNARVAAFLVLAISVPL 486 (939)
Q Consensus 451 lv~~Ll~~i~p~~~-~e~~~dd~~yiA~Lili~~A~~ 486 (939)
-+|.+.++--.+ +-++..|+.||-++|=-..+|.
T Consensus 191 --qeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~Av 225 (460)
T KOG2213|consen 191 --QELAEEQEGLADLDAFNVSDADYVDRFISCLLMAV 225 (460)
T ss_pred --HHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhh
Confidence 233333333222 2367899999999998777776
No 115
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.36 E-value=0.091 Score=49.12 Aligned_cols=88 Identities=23% Similarity=0.149 Sum_probs=69.3
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
.........++||.+-||.-|+.-|.++..... ....-.+.+...+...|+|+|+.|=+.||++|..+++..
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~------- 74 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH------- 74 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-------
Confidence 345566778899999999999999999876543 122234567888999999999999999999999999742
Q ss_pred cccccchhHHHHHHHhhcCCC
Q 002304 228 NRIDCSDVVFIQLCSMIRDMR 248 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s 248 (939)
.+.++..|+....|++
T Consensus 75 -----p~~vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 75 -----PDEVLPILLDEYADPS 90 (92)
T ss_pred -----hHHHHHHHHHHHhCcc
Confidence 2457888888777764
No 116
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.19 Score=59.75 Aligned_cols=129 Identities=22% Similarity=0.184 Sum_probs=92.5
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHH--hcchhhhhcccccccccchhHHHHHHH-hhcCCCHHHHHHHHHHHhcccCCcH
Q 002304 191 CCRAVELLRDHEDCVRCAAVRVVSE--WGKMLIACIDEKNRIDCSDVVFIQLCS-MIRDMRMEVRVEAFNALGKVGMISE 267 (939)
Q Consensus 191 ~~~l~~lL~Ddd~~VR~aAV~aLg~--lg~~~~~~~~~~~~i~lvddaf~aLc~-aL~D~s~~VR~~AA~ALG~i~~vs~ 267 (939)
+....+++.|.|+..|...+-.++. -|.. + ..++..|.+ +++|.+-.||++|.-|||=+.-...
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTg-----------n--~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~ 584 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTG-----------N--LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR 584 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCC-----------c--chhHhhhheeecccCchHHHHHHHHheeeeEecCc
Confidence 4456778999999999988776652 2210 0 123344444 4899999999999999999854333
Q ss_pred HHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC-CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 002304 268 IVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE-DEFYEVRKSACSSLGSLVILSEKFAGEALNLLVD 346 (939)
Q Consensus 268 ~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le-DE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lvd 346 (939)
+.|. .-+..|. .-++.||...|-+||-...... .+.|++.|-.
T Consensus 585 ~~lv----------------------------------~tvelLs~shN~hVR~g~AvaLGiacag~G--~~~a~diL~~ 628 (926)
T COG5116 585 DLLV----------------------------------GTVELLSESHNFHVRAGVAVALGIACAGTG--DKVATDILEA 628 (926)
T ss_pred chhh----------------------------------HHHHHhhhccchhhhhhhHHHhhhhhcCCc--cHHHHHHHHH
Confidence 3333 2333443 3478999999999986543221 1568899999
Q ss_pred HhcCCCHHHHHHHHHHHhhhhh
Q 002304 347 MLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 347 mLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
+..|....||..|.-|++.|-.
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 117
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=1.1 Score=53.11 Aligned_cols=151 Identities=17% Similarity=0.108 Sum_probs=108.3
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhc
Q 002304 231 DCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHG 310 (939)
Q Consensus 231 ~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~ 310 (939)
.+.++.+..+.+...|++..+|..|+..||.+....++. ++. +.+..+.++|.+
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k--------v~t------------------h~~~~ldaii~g 307 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK--------VRT------------------HKTTQLDAIIRG 307 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH--------HHH------------------hHHHHHHHHHHH
Confidence 445788899999999999999999999999996532222 111 123456678888
Q ss_pred cCC-CcHHHHHHHHHHHHhccccc-----hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh----cccccchhhHH-
Q 002304 311 FED-EFYEVRKSACSSLGSLVILS-----EKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT----CEHLNLEDKHM- 379 (939)
Q Consensus 311 LeD-E~~eVR~aAaeALGkL~~~s-----~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~----~~~i~l~E~aL- 379 (939)
|-| .+-+|--.|+..|-.....- ..+...+...+..++.|+++.+|.+|+...|.++. .+..-+.|...
T Consensus 308 L~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k 387 (533)
T KOG2032|consen 308 LYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKK 387 (533)
T ss_pred HhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHh
Confidence 754 46799999999985544211 11224566778999999999999999999999985 12222333222
Q ss_pred --HHHHHhcCCCCHHHHHHHHHHHhhccCC
Q 002304 380 --HMFLGTLVDNSELVRCAARKILKLVKTP 407 (939)
Q Consensus 380 --~~LL~~L~D~~~dVR~aA~~aLg~i~l~ 407 (939)
..|+--|.|++|.|-+|-...+..+..+
T Consensus 388 ~~~~lllhl~d~~p~va~ACr~~~~~c~p~ 417 (533)
T KOG2032|consen 388 RLAPLLLHLQDPNPYVARACRSELRTCYPN 417 (533)
T ss_pred ccccceeeeCCCChHHHHHHHHHHHhcCch
Confidence 3566788999999998888888777654
No 118
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.00 E-value=1.6 Score=52.42 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=127.2
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccc-ccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhc
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVV-FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~-~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
..-+++..-+..+.+|..+..+|.-.|.++..--. +.+...-+.++....+..+..++.|-..||+--.-+-..-+..+
T Consensus 219 rNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~ 298 (858)
T COG5215 219 RNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGE 298 (858)
T ss_pred hchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhH
Confidence 34566677788999999999999999998875321 11112233455555677789999999888885532211110000
Q ss_pred ccc---cccc---------cchhHHHHHHHhhc-------CCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhh
Q 002304 225 DEK---NRID---------CSDVVFIQLCSMIR-------DMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEK 285 (939)
Q Consensus 225 ~~~---~~i~---------lvddaf~aLc~aL~-------D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~k 285 (939)
-+. .+++ -+.|++..|.++|. |.+|.+-.+|+.-|--+..+ -.+++|+
T Consensus 299 ~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--------~gd~i~~----- 365 (858)
T COG5215 299 MEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--------KGDKIMR----- 365 (858)
T ss_pred HHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--------hhhHhHH-----
Confidence 000 0111 12456666666653 57899998888777655431 1111221
Q ss_pred hhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcccc-ch----hhHHHHHHHHHHHhcCCCHHHHHHHH
Q 002304 286 KFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL-SE----KFAGEALNLLVDMLNDDSVTVRLQAL 360 (939)
Q Consensus 286 r~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~-s~----~fA~~ALd~LvdmLnDe~~~VRl~Aa 360 (939)
+ +.+-.-.-+..|+|.=|.+|+-|+|..-.. .. .+..+++|.+..+.+|..-.|.-.++
T Consensus 366 ---------------p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 366 ---------------P-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred ---------------H-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 1 233333568899999999999999986642 11 13578999999999999999999999
Q ss_pred HHHhhhhh
Q 002304 361 ETMHIMVT 368 (939)
Q Consensus 361 ~ALgkI~~ 368 (939)
.++|.|+.
T Consensus 430 wc~g~iad 437 (858)
T COG5215 430 WCFGAIAD 437 (858)
T ss_pred HHHHHHHH
Confidence 99999994
No 119
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=94.98 E-value=0.024 Score=41.24 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHhcC
Q 002304 318 VRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350 (939)
Q Consensus 318 VR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnD 350 (939)
||.+|+.+||+++. .++++.|++.++|
T Consensus 1 VR~~Aa~aLg~igd------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHHhcC
Confidence 68888888888886 4677888777765
No 120
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.94 E-value=0.097 Score=65.06 Aligned_cols=205 Identities=18% Similarity=0.190 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC-CCcHHHHHHHHH
Q 002304 246 DMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE-DEFYEVRKSACS 324 (939)
Q Consensus 246 D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le-DE~~eVR~aAae 324 (939)
=....||..+.-.||+|.-.-++. .....|+|+.-|| .+...||-.-+-
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~L------------------------------aKr~~P~lvkeLe~~~~~aiRnNiV~ 991 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRL------------------------------AKRLMPMLVKELEYNTAHAIRNNIVL 991 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHH------------------------------HHHHHHHHHHHHHhhhHHHHhcceee
Confidence 346678888888888875211111 2235678888887 567899999999
Q ss_pred HHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 325 SLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 325 ALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
++|.+......+..+-+|-+...|.|+++.||.+++.-|.++-..+-+.+.-...=.++-.|-|++++||.-+.-.++.+
T Consensus 992 am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 992 AMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred eehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 99999877666677888999999999999999999999999987777777777777888899999999999887777664
Q ss_pred cC--CchhHHHHHHHHHHH--------hhccCccchHHHHHHHHHhhcccccch---HHHHHHHhhhcCCCCCCCCCCCc
Q 002304 405 KT--PKLEFFRLFIDGLLE--------NLKIYPQDEADVFSVLFFIGRSHGNFA---ACIIKEVCQEIEPDSDDKLGFDN 471 (939)
Q Consensus 405 ~l--~~~~~l~~~l~~LL~--------~L~~~peDr~~I~~aL~~LG~~H~~lv---~~lv~~Ll~~i~p~~~~e~~~dd 471 (939)
-. +..--.+.+++.+.. -..++++++. -..+..||-+.|... -.+..-|++.. ++|--+
T Consensus 1072 L~~~~P~~f~~~FVe~i~~ln~~~~h~g~~n~~qs~r--~~~~fSi~G~d~~aR~~Rm~IY~fLL~~~----~de~rf-- 1143 (1529)
T KOG0413|consen 1072 LQSEEPNFFPLNFVEYIIALNQARRHVGVGNHDQSDR--GQVDFSIGGGDPLARPSRMAIYTFLLDSL----DDESRF-- 1143 (1529)
T ss_pred HhhcCccchHHHHHHHHHHHHHHHHhhCCCCCcccch--hceeEeecCCCcccchhhhhHHHHHHHhc----ChHHHH--
Confidence 21 112222334443332 1123455432 344555654443333 34555666652 222222
Q ss_pred hhHHHHHHHHhhccccCc
Q 002304 472 ARVAAFLVLAISVPLSCE 489 (939)
Q Consensus 472 ~~yiA~Lili~~A~~s~~ 489 (939)
.+.+.+..-+=|+.++-
T Consensus 1144 -~v~~kiC~~Ila~~~dG 1160 (1529)
T KOG0413|consen 1144 -DVKMKICQRILAPIVDG 1160 (1529)
T ss_pred -HHHHHHHHHHHHHHhcC
Confidence 23455555555666554
No 121
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=2.2 Score=53.37 Aligned_cols=344 Identities=17% Similarity=0.142 Sum_probs=187.6
Q ss_pred hcchHHHhhccCCC-cHHHHHHHHHHHHhcccc---chhhH--HHHHHHHHH-HhcCCCHHHHHHHHHHHhhhhh-cccc
Q 002304 301 SAAAGTFVHGFEDE-FYEVRKSACSSLGSLVIL---SEKFA--GEALNLLVD-MLNDDSVTVRLQALETMHIMVT-CEHL 372 (939)
Q Consensus 301 s~a~gaLI~~LeDE-~~eVR~aAaeALGkL~~~---s~~fA--~~ALd~Lvd-mLnDe~~~VRl~Aa~ALgkI~~-~~~i 372 (939)
...+|++|..|.+| +.++---|+.||..|-.. +-.++ ..|+|.|+. ++.=++.+|-.++++||-+|+- +++.
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A 289 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA 289 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence 45789999999988 789999999999666542 33343 338888765 6677899999999999999985 3444
Q ss_pred cchhhHHHHHHHhcCCCCHHH-HHHHHHHHhhccCCchhHHHHHHHH--HHHhhccCccc--hHHHHHHHHHhh--ccc-
Q 002304 373 NLEDKHMHMFLGTLVDNSELV-RCAARKILKLVKTPKLEFFRLFIDG--LLENLKIYPQD--EADVFSVLFFIG--RSH- 444 (939)
Q Consensus 373 ~l~E~aL~~LL~~L~D~~~dV-R~aA~~aLg~i~l~~~~~l~~~l~~--LL~~L~~~peD--r~~I~~aL~~LG--~~H- 444 (939)
.++.-++-+.+.-|+=-.-.+ |.|++.+-++|+--..+.++.+++. ||..|-.|.++ -.++.-|+.+|. -.|
T Consensus 290 iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 290 ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 455556666666666444444 5566677777765555666666554 34444444432 235666777774 333
Q ss_pred ccchHH-HHHHHhhhcCCCCC-CCCCCCchhHHHHHHHHhhccccCcCCCCCCChhhhhhhHhhhchhhhhhhhhhhhhh
Q 002304 445 GNFAAC-IIKEVCQEIEPDSD-DKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHS 522 (939)
Q Consensus 445 ~~lv~~-lv~~Ll~~i~p~~~-~e~~~dd~~yiA~Lili~~A~~s~~~~~~~ip~~~fsh~~~~~~k~y~~l~D~m~~~s 522 (939)
|+..+. +-..|++.+..... ..+.+..+.|..++-++.-.+..+|. .|.--. +-.|-..|+++|--.+
T Consensus 370 ~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl--------~~~tl~--k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 370 PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPL--------LFRTLL--KLDIADTLKRILQGYS 439 (1051)
T ss_pred hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChH--------HHHHHH--HhhHHHHHHHHHhccC
Confidence 222111 11112221111111 23577888898888877777766552 332100 1134444444442211
Q ss_pred hhh-----------------------hhccccCCC-------ccccccCCCCCCcccccCCCCCCCcccccccccccccc
Q 002304 523 LMA-----------------------YLSLCSRLS-------NFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQK 572 (939)
Q Consensus 523 l~~-----------------------~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (939)
-.+ =|-||++.. .+--..++..+..+|-+++|.-.|-.-+-+++.|--|+
T Consensus 440 ~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~ 519 (1051)
T KOG0168|consen 440 KSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQI 519 (1051)
T ss_pred cCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhh
Confidence 111 122333222 01111223333444444544333333222333333344
Q ss_pred cchhhhccchhhhcchhhchhcchhhhhhHHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHhhhhcccCcc
Q 002304 573 SSDEASKSRSWIHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFD 652 (939)
Q Consensus 573 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~il~~v~~~~~~~~~~~~~~~~~~L~~~~~eL~~l~~~~~~~~ 652 (939)
..+ ++.+|++ +++++..+...|.-+.-+..++|++.++--+-.+ +..+.+..++.++|++--| +
T Consensus 520 ~~~-~~t~~~~-~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveV--YsSsA~~~VR~kcL~Ailr----l-------- 583 (1051)
T KOG0168|consen 520 NED-TGTSRKQ-QDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEV--YSSSANPDVRYKCLSAILR----L-------- 583 (1051)
T ss_pred ccC-cccchhh-hhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHH--HhccCCchhhHHHHHHHHH----H--------
Confidence 333 3333332 2233333333666666678888988888765444 3566777888888873221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc
Q 002304 653 GALLFSLQYFKVLKLLTKGWEQFVP 677 (939)
Q Consensus 653 g~~~f~~~Yl~~~~ll~k~~~~~~~ 677 (939)
.|+--.++|..++.+..+
T Consensus 584 -------vy~s~seli~slLk~~~v 601 (1051)
T KOG0168|consen 584 -------VYFSNSELIGSLLKNTNV 601 (1051)
T ss_pred -------HhhCCHHHHHHHHhcchH
Confidence 233336777777776653
No 122
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.64 E-value=0.37 Score=62.79 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=111.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHH
Q 002304 239 QLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEV 318 (939)
Q Consensus 239 aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eV 318 (939)
.|...++-+...||..|-+.|..|..+.+.+|- .+.+-.+....+.|....|
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~----------------------------~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLS----------------------------RPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc----------------------------CHHHHHHHHHhhccchhHH
Confidence 566788999999999999999999877666642 2333446667889999999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhc-ccccchhhHHHHHHHhcCCCCHHHHHHH
Q 002304 319 RKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC-EHLNLEDKHMHMFLGTLVDNSELVRCAA 397 (939)
Q Consensus 319 R~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~-~~i~l~E~aL~~LL~~L~D~~~dVR~aA 397 (939)
|.+|++=+|+.....++.+.+-.+.++...+|..-.||.++|+-|.+|... ..+...-+..-.++..-+|+...|.+-+
T Consensus 872 REAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv 951 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLV 951 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHH
Confidence 999999999988888999999999999999999999999999999999852 2233333455556666779988888888
Q ss_pred HHHHhhc
Q 002304 398 RKILKLV 404 (939)
Q Consensus 398 ~~aLg~i 404 (939)
.+.+-+.
T Consensus 952 ~etf~kl 958 (1692)
T KOG1020|consen 952 RETFLKL 958 (1692)
T ss_pred HHHHHHH
Confidence 8877653
No 123
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.31 E-value=0.47 Score=55.78 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=111.9
Q ss_pred chHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhh
Q 002304 203 DCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGA 281 (939)
Q Consensus 203 ~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~ 281 (939)
.-||++|..+|-.++..+.-. +..+ ......+|..+.|+.+.|-..+|+.|-+++. ...+.+..+-+..+.+.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~-----~~~~-~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~ 342 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMT-----QAYL-MELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRA 342 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhc
Confidence 458999999888877643100 0000 2244578889999999999999999988854 11111111111111111
Q ss_pred -hh------h-hhhcc-----c-cch----------hhhhhhh---hcchHHHhhccCCC-cHHHHHHHHHHHHhcccc-
Q 002304 282 -TK------E-KKFHS-----L-GAA----------ECFEISA---SAAAGTFVHGFEDE-FYEVRKSACSSLGSLVIL- 332 (939)
Q Consensus 282 -lk------~-kr~~~-----~-l~~----------d~~~l~~---s~a~gaLI~~LeDE-~~eVR~aAaeALGkL~~~- 332 (939)
++ . .+... - .++ +.|.-++ ..++.+|..|-.|. +--||.+|+.+++-+.-.
T Consensus 343 ~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp 422 (728)
T KOG4535|consen 343 PFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHP 422 (728)
T ss_pred cHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEecc
Confidence 00 0 00000 0 011 1111112 35788999998864 556999999999765531
Q ss_pred ----chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 333 ----SEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 333 ----s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
.-.|...|...+...+.|..-.+|.+|+.++|.|. ++|-|..|.+|.++.++.|.
T Consensus 423 ~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnIT----------------dAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 423 CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNIT----------------DALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhH----------------HHHHcCCCCchHHHHHHHHH
Confidence 12245778888999999999999999999999887 35667778888877777766
No 124
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.29 E-value=0.46 Score=60.00 Aligned_cols=216 Identities=20% Similarity=0.182 Sum_probs=112.0
Q ss_pred HHHHHHHHHhhhhcccc-cchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchh-HHHHHHH
Q 002304 165 REAALNGLVCLLKHVVF-EDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDV-VFIQLCS 242 (939)
Q Consensus 165 RraAl~AL~~L~~~~~~-~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvdd-af~aLc~ 242 (939)
|--|+.-|+++-+-|.. .+-++.=+|+|-++++|+..-.+.|-.=|- .|++.+. .|..-|+.++.| ......+
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVF---IWAKILA--vD~SCQ~dLvKe~g~~YF~~ 561 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVF---IWAKILA--VDPSCQADLVKENGYKYFLQ 561 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHH---HHHHHHh--cCchhHHHHHhccCceeEEE
Confidence 33467778887774421 233455579999999999998888865433 3443320 011112222211 0000111
Q ss_pred hhcC---CCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCC-CcHH
Q 002304 243 MIRD---MRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFED-EFYE 317 (939)
Q Consensus 243 aL~D---~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeD-E~~e 317 (939)
.|.| .++.=|.+||-.|+-| .+..... ..+|.+.+ ++.=...|+| +.+-
T Consensus 562 vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ-~acl~~~l-------------------------i~iCle~lnd~~~pL 615 (1387)
T KOG1517|consen 562 VLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ-KACLNGNL-------------------------IGICLEHLNDDPEPL 615 (1387)
T ss_pred EecCcCCCCHHHHHHHHHHHHHHHcccchhH-HHhccccH-------------------------HHHHHHHhcCCccHH
Confidence 2333 4467899999999887 3321000 11122222 2222233334 2455
Q ss_pred HHHHHHHHHHhccccchh--h---HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc---------c----------c
Q 002304 318 VRKSACSSLGSLVILSEK--F---AGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH---------L----------N 373 (939)
Q Consensus 318 VR~aAaeALGkL~~~s~~--f---A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~---------i----------~ 373 (939)
.|+=.+--||+|=....+ + -..|.+-|+..+.|+.++||.+|+-|||.+-..+. + .
T Consensus 616 LrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~ 695 (1387)
T KOG1517|consen 616 LRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERT 695 (1387)
T ss_pred HHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhh
Confidence 555555555554322111 0 02244555555555555555555555555432110 0 1
Q ss_pred chhhHHH----HHHHhcCCCCHHHHHHHHHHHhhccCCchhH
Q 002304 374 LEDKHMH----MFLGTLVDNSELVRCAARKILKLVKTPKLEF 411 (939)
Q Consensus 374 l~E~aL~----~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~ 411 (939)
..|+.+. .++.++.|..+-||+++..+|.......+.-
T Consensus 696 ~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 696 SIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred hHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 1244444 7889999999999999999998876554433
No 125
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.93 E-value=1.3 Score=55.81 Aligned_cols=199 Identities=12% Similarity=0.065 Sum_probs=138.3
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHH
Q 002304 190 CCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEI 268 (939)
Q Consensus 190 i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~ 268 (939)
+-+.+...+.|.+.-=|.+|++.+...-.... ...+....+....-+-..+.|.+..|=..||..|+.|.. ....
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 44566778899999999999999886432110 011222334455566678899999999999999999843 2221
Q ss_pred HHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q 002304 269 VLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDML 348 (939)
Q Consensus 269 ~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmL 348 (939)
+. -....+.+.|.+.|.|-...||-++..++-..++..+. .+..+.+.+++
T Consensus 330 ~~---------------------------~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l--~~~~~~I~e~l 380 (815)
T KOG1820|consen 330 FR---------------------------KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL--SKMSEAILEAL 380 (815)
T ss_pred hH---------------------------HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHh
Confidence 10 01345677899999999999999988888666653332 46789999999
Q ss_pred cCCCHHHHHHHHHHHhhhhh-cc----cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhh
Q 002304 349 NDDSVTVRLQALETMHIMVT-CE----HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENL 423 (939)
Q Consensus 349 nDe~~~VRl~Aa~ALgkI~~-~~----~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L 423 (939)
.+.++.+|......+.+.-. .+ .-...++.++.++..-+|.+.+||+++.++++.+.-- -+ +..++.+|..+
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~--~G-e~~~~k~L~~~ 457 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV--HG-EEVFKKLLKDL 457 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH--hh-HHHHHHHHHhh
Confidence 99999999997777665432 11 1112357889999999999999999999988775421 11 22456666644
Q ss_pred c
Q 002304 424 K 424 (939)
Q Consensus 424 ~ 424 (939)
+
T Consensus 458 ~ 458 (815)
T KOG1820|consen 458 D 458 (815)
T ss_pred c
Confidence 3
No 126
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.75 E-value=0.4 Score=59.92 Aligned_cols=208 Identities=17% Similarity=0.134 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhh---h-----cccccccccchh
Q 002304 164 VREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIA---C-----IDEKNRIDCSDV 235 (939)
Q Consensus 164 VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~---~-----~~~~~~i~lvdd 235 (939)
-+..|++.|.=+.+.-+.-...-..++...++..|++ +++=-.|++++..+-....+ . .....+.|.-.|
T Consensus 790 ls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ 867 (1030)
T KOG1967|consen 790 LSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCD 867 (1030)
T ss_pred hhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHh
Confidence 4666777665444321100001123466778888887 66667788888766443211 0 001234455567
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCC
Q 002304 236 VFIQLCSMIRDMRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDE 314 (939)
Q Consensus 236 af~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE 314 (939)
++..|.+-..-....+|-.=-.+|... ++++...+.+- -+...+-++.+|.=+
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~--------------------------~~~LlPLLLq~Ls~~ 921 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ--------------------------FPMLLPLLLQALSMP 921 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc--------------------------hhhHHHHHHHhcCCC
Confidence 777888777766667777777777776 66665554321 134567889999999
Q ss_pred cHHHHHHHHHHHHhccccchhh----HHHHHHHHHHHhcCCC---HHHHHHHHHHHhhhhh----cccccchhhHHHHHH
Q 002304 315 FYEVRKSACSSLGSLVILSEKF----AGEALNLLVDMLNDDS---VTVRLQALETMHIMVT----CEHLNLEDKHMHMFL 383 (939)
Q Consensus 315 ~~eVR~aAaeALGkL~~~s~~f----A~~ALd~LvdmLnDe~---~~VRl~Aa~ALgkI~~----~~~i~l~E~aL~~LL 383 (939)
+..||..+...+.-+...++.+ ....+|.+..+-.|.+ ..||..|++.|+.+.. ..-...+++.+.+|.
T Consensus 922 D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~ 1001 (1030)
T KOG1967|consen 922 DVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALI 1001 (1030)
T ss_pred ccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhh
Confidence 9999999999986655443333 3566788888887877 8999999999999874 223446788999999
Q ss_pred HhcCCCCHHHHHHHHH
Q 002304 384 GTLVDNSELVRCAARK 399 (939)
Q Consensus 384 ~~L~D~~~dVR~aA~~ 399 (939)
..|+|+-.-||+.|..
T Consensus 1002 k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 1002 KILDDKKRLVRKEAVD 1017 (1030)
T ss_pred hccCcHHHHHHHHHHH
Confidence 9999999999998865
No 127
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.35 E-value=5.5 Score=49.86 Aligned_cols=115 Identities=20% Similarity=0.149 Sum_probs=78.5
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIAC 223 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~ 223 (939)
+....++..+..+++.++..++..|++.|..+.-....-..=+..+++|.++.+|.|+ ..|.-|+..|.-++..
T Consensus 327 m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d---- 400 (708)
T PF05804_consen 327 MAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD---- 400 (708)
T ss_pred HHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC----
Confidence 3566778899999999999999999999999876432112223345789999999875 4777788888877752
Q ss_pred cccccccccchhHHHHHHHhh-cCCCHHHHHHHHHHHhcccCC
Q 002304 224 IDEKNRIDCSDVVFIQLCSMI-RDMRMEVRVEAFNALGKVGMI 265 (939)
Q Consensus 224 ~~~~~~i~lvddaf~aLc~aL-~D~s~~VR~~AA~ALG~i~~v 265 (939)
++.....-..+++..|.+++ .-++.+|..++...+-.+...
T Consensus 401 -d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 401 -DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred -HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 11111111235677787765 446777777776666666443
No 128
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=1.4 Score=49.64 Aligned_cols=181 Identities=15% Similarity=0.076 Sum_probs=121.0
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHH
Q 002304 191 CCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVL 270 (939)
Q Consensus 191 ~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~L 270 (939)
+..+...|.++|..+-..++..+..++..-... --.....+...+.+.++.+...|-++|...++.|-.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~-----l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs------ 158 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPES-----LNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFS------ 158 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH------
Confidence 455566677777777777777776655421110 001124566788899999999999999999999842
Q ss_pred HHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcC
Q 002304 271 LQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350 (939)
Q Consensus 271 lqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnD 350 (939)
.+++.+...+ +. .+-.|.+.=.+.+..||..|-.||-.+.. +.-..++++.|+-.+..
T Consensus 159 --~ln~~i~~~l-----------------d~-lv~~Ll~ka~~dnrFvreda~kAL~aMV~--~vtp~~~L~~L~~~~~~ 216 (334)
T KOG2933|consen 159 --SLNNSIDQEL-----------------DD-LVTQLLHKASQDNRFVREDAEKALVAMVN--HVTPQKLLRKLIPILQH 216 (334)
T ss_pred --HHHHHHHHHH-----------------HH-HHHHHHhhhcccchHHHHHHHHHHHHHHh--ccChHHHHHHHHHHHhh
Confidence 1222211111 11 12245555566778999999999988874 23346889999999999
Q ss_pred CCHHHHHHHHHHHhhhhhcc-----cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 351 DSVTVRLQALETMHIMVTCE-----HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 351 e~~~VRl~Aa~ALgkI~~~~-----~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
.+..||..+.......-... ..-...+.++++-.-+.|.-|++|++|+-.+...
T Consensus 217 ~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 217 SNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred hchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhH
Confidence 99999999987665433210 0012356778888899999999999887766553
No 129
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=6.3 Score=45.00 Aligned_cols=249 Identities=16% Similarity=0.143 Sum_probs=129.1
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHH-------HHHHhhCCCCchHHHHHHHHHHHhcchh
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCC-------RAVELLRDHEDCVRCAAVRVVSEWGKML 220 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~-------~l~~lL~Ddd~~VR~aAV~aLg~lg~~~ 220 (939)
++.+.+.......|..|-++|++.+..+.--.. ..+.+++ .+.++.---++.+|....+.+.++....
T Consensus 128 eilklildcIggeddeVAkAAiesikrialfpa-----aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiS 202 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALFPA-----ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSIS 202 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH-----HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 467888899999999999999999988764211 0011111 1122222335566776677666655432
Q ss_pred hhhcccccccccchhHHHHHHHhh-cCCCHHHHHHHHHHHhcccC-------CcHHHHHHHhhHHHhhhhhh--hhhccc
Q 002304 221 IACIDEKNRIDCSDVVFIQLCSMI-RDMRMEVRVEAFNALGKVGM-------ISEIVLLQTLSKKVLGATKE--KKFHSL 290 (939)
Q Consensus 221 ~~~~~~~~~i~lvddaf~aLc~aL-~D~s~~VR~~AA~ALG~i~~-------vs~~~LlqtL~kklm~~lk~--kr~~~~ 290 (939)
..+-++-.+.-+ +..|-.-+ .-++.-||....+..-++.. ++.+-+++.+..-+...... .+.+..
T Consensus 203 pesaneckkSGL----ldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfral 278 (524)
T KOG4413|consen 203 PESANECKKSGL----LDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRAL 278 (524)
T ss_pred HHHHhHhhhhhH----HHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHH
Confidence 111110001111 12232333 34777777777776655521 33444444443332221100 000000
Q ss_pred cchhh----hhhhh---hcchHHHhh-------ccCCCcHHHHHHHHHHHHhccccchh--hH----HHHHHHHHHHhcC
Q 002304 291 GAAEC----FEISA---SAAAGTFVH-------GFEDEFYEVRKSACSSLGSLVILSEK--FA----GEALNLLVDMLND 350 (939)
Q Consensus 291 l~~d~----~~l~~---s~a~gaLI~-------~LeDE~~eVR~aAaeALGkL~~~s~~--fA----~~ALd~LvdmLnD 350 (939)
...++ -++|+ ...|.+++. ..|-.+...-.+|++++|.+|..... +. ..+...|+...-|
T Consensus 279 mgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafd 358 (524)
T KOG4413|consen 279 MGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFD 358 (524)
T ss_pred HHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhc
Confidence 00000 01222 223333332 24555667789999999999963211 11 2355666666666
Q ss_pred CCHH-HHHHHHHHHhhhhhccccc------------ch------------hhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 351 DSVT-VRLQALETMHIMVTCEHLN------------LE------------DKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 351 e~~~-VRl~Aa~ALgkI~~~~~i~------------l~------------E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
.+.+ =...|+++|..|+..-+.. ++ -+.+..+++.+.-++|++|.++.+.+-.+.
T Consensus 359 qnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 359 QNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred ccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 6654 3456788888887411110 00 145667888888888888888777665543
No 130
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=93.01 E-value=0.071 Score=38.76 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHhcCC
Q 002304 355 VRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVD 388 (939)
Q Consensus 355 VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D 388 (939)
||..|+.+||+|+. +++++.|+++|+|
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhcC
Confidence 89999999999994 5799999998875
No 131
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.97 E-value=0.39 Score=47.17 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=65.5
Q ss_pred hcCCchHHHHHHhhhccccCCChhhHHHHHHhhh-cCCCHHHHHHHHHHHHhhhhcccccchhhh--hhHHHHHHHhhCC
Q 002304 124 CFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLT-KDPYPYVREAALNGLVCLLKHVVFEDVDLI--QGCCCRAVELLRD 200 (939)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll-~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~--~~i~~~l~~lL~D 200 (939)
..+++...--.-..|+.+|.-..-.++..|.+++ ...||.+-..|...||.+...- +.+..++ .+.-..+.+++++
T Consensus 19 ~WSP~H~se~FW~ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h 97 (119)
T PF11698_consen 19 EWSPVHKSEKFWRENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNH 97 (119)
T ss_dssp ---GGGG-HHHHHHHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-
T ss_pred cccCCCCCccHHHHHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcC
Confidence 4444444334447899999999999999999999 5668999999999999886421 0111222 2245667889999
Q ss_pred CCchHHHHHHHHHHHh
Q 002304 201 HEDCVRCAAVRVVSEW 216 (939)
Q Consensus 201 dd~~VR~aAV~aLg~l 216 (939)
+|++||..|+.++..+
T Consensus 98 ~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 98 EDPEVRYEALLAVQKL 113 (119)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999865
No 132
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=92.93 E-value=0.11 Score=38.21 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCC
Q 002304 353 VTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDN 389 (939)
Q Consensus 353 ~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~ 389 (939)
|.||..|+.+||+++. +++++.|...|+|+
T Consensus 1 ~~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLGD-------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcCC-------HhHHHHHHHHhcCC
Confidence 4799999999999984 56899999999885
No 133
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.58 E-value=1.1 Score=58.62 Aligned_cols=207 Identities=16% Similarity=0.083 Sum_probs=120.5
Q ss_pred hhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc-c
Q 002304 185 DLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV-G 263 (939)
Q Consensus 185 ~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i-~ 263 (939)
.+..++.|.+..-|.-++..||..|+..+|.+=........ .--++.+.+-+.++.|.+..||.++.+.--.+ -
T Consensus 255 ~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-----~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 255 QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-----ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-----ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 34455678888889999999999999999976432110000 11267889999999999999999988765543 1
Q ss_pred CCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcccc--chhhHHHHH
Q 002304 264 MISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL--SEKFAGEAL 341 (939)
Q Consensus 264 ~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~--s~~fA~~AL 341 (939)
+-+ .. ..+....+.-...|-+..||.+..-.++..... .-.+....+
T Consensus 330 ~~~-~~------------------------------~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll 378 (1266)
T KOG1525|consen 330 NNP-SI------------------------------AKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLL 378 (1266)
T ss_pred cCc-hh------------------------------hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHH
Confidence 111 00 000011111122344445555444333322210 001122366
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhhhc--------ccccch--hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhH
Q 002304 342 NLLVDMLNDDSVTVRLQALETMHIMVTC--------EHLNLE--DKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEF 411 (939)
Q Consensus 342 d~LvdmLnDe~~~VRl~Aa~ALgkI~~~--------~~i~l~--E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~ 411 (939)
..+.+.+.|.-+.||..|++.|.++-.. ++.... +..-..|+..+-+.+-+-|..+..+|...-.|..-.
T Consensus 379 ~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~ 458 (1266)
T KOG1525|consen 379 KLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLS 458 (1266)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCC
Confidence 7777788888888888888888777531 111000 123456667777777777765666666665555555
Q ss_pred HHHHHHHHHHhhccCc
Q 002304 412 FRLFIDGLLENLKIYP 427 (939)
Q Consensus 412 l~~~l~~LL~~L~~~p 427 (939)
.+..+..|...+..+.
T Consensus 459 ~q~Rmk~l~~~l~~~D 474 (1266)
T KOG1525|consen 459 TQERMKHLYQLLAGLD 474 (1266)
T ss_pred HHHHHHHHHHHHhccc
Confidence 5666666666555544
No 134
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.51 E-value=1.8 Score=54.59 Aligned_cols=190 Identities=14% Similarity=0.170 Sum_probs=134.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcc-hHHHhhccCCCcH
Q 002304 239 QLCSMIRDMRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAA-AGTFVHGFEDEFY 316 (939)
Q Consensus 239 aLc~aL~D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a-~gaLI~~LeDE~~ 316 (939)
.+-..+.|++|.=|.+|.+.|..+ .+.. +.. .. ...+. +..+-..+.|.+-
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~------------------~~~----~~-----~~~~ll~~~~ki~~kDaN~ 309 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK------------------KEI----VK-----GYTGLLGILLKIRLKDANI 309 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc------------------ccc----cc-----CcchHHHHHHHHhccCcch
Confidence 455678899999999999988775 2110 000 00 01122 2233455679999
Q ss_pred HHHHHHHHHHHhcccc----chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHH
Q 002304 317 EVRKSACSSLGSLVIL----SEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSEL 392 (939)
Q Consensus 317 eVR~aAaeALGkL~~~----s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~d 392 (939)
.|=.-|+..|..++.. ...++....+.|.+.+.|-...||-.+..++-.+++. .--++..+.++.+|++.+|-
T Consensus 310 ~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~l~~~~~~I~e~lk~knp~ 386 (815)
T KOG1820|consen 310 NVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TPLSKMSEAILEALKGKNPQ 386 (815)
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhcCCChh
Confidence 9999888888776643 2335677889999999999999999999999998852 22357889999999999999
Q ss_pred HHHHHHHHHhhc--cC----CchhHHHHHHHHHHHhh-ccCccchHHHHHHHHHhhcccccchHHHHHHHhhhcCC
Q 002304 393 VRCAARKILKLV--KT----PKLEFFRLFIDGLLENL-KIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEP 461 (939)
Q Consensus 393 VR~aA~~aLg~i--~l----~~~~~l~~~l~~LL~~L-~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p 461 (939)
+|.....++... ++ .....++.++..++... +.++++|..+.+++.-+-+-|+ +..+..++..+++
T Consensus 387 ~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G---e~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 387 IKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG---EEVFKKLLKDLDK 459 (815)
T ss_pred hHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh---HHHHHHHHHhhcc
Confidence 999877766553 22 23344555666666666 5667779999999999987664 4556777776544
No 135
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=92.33 E-value=6.5 Score=47.19 Aligned_cols=208 Identities=18% Similarity=0.139 Sum_probs=126.7
Q ss_pred HHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHH--HhhC-----CCCc
Q 002304 131 VRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAV--ELLR-----DHED 203 (939)
Q Consensus 131 ~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~--~lL~-----Ddd~ 203 (939)
.++-.++.-......+.+.+..+.-...|++..|-..|-+.|.++.-. .++..++..+|..+. ..-. =-.+
T Consensus 220 ~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~--~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~ 297 (501)
T PF13001_consen 220 RKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVS--LEDPDLVDRLFDLYLGKGIPPENGRPPASP 297 (501)
T ss_pred HHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhcCCchhcCCCCCCH
Confidence 344444553333356667777777777889999999999999988755 356677777776666 2111 1244
Q ss_pred hHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCC--CHHHHHHHHHHH---hcc-cCCcHHHHHHHhhHH
Q 002304 204 CVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDM--RMEVRVEAFNAL---GKV-GMISEIVLLQTLSKK 277 (939)
Q Consensus 204 ~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~--s~~VR~~AA~AL---G~i-~~vs~~~LlqtL~kk 277 (939)
.+|. +.|+.+.....+.+. .+....-+...+... +.++|..+.+-+ ... ...++..+ +.+..-
T Consensus 298 ~lq~---kIL~~L~kS~~Aa~~-------~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~ 366 (501)
T PF13001_consen 298 RLQE---KILSLLSKSVIAATS-------FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPV 366 (501)
T ss_pred HHHH---HHHHHHHHhHHHHhC-------CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHH
Confidence 4444 444544444322221 122333344567777 778888887777 443 22333332 333333
Q ss_pred HhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH---HHHHHHHHHHhcCCCHH
Q 002304 278 VLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA---GEALNLLVDMLNDDSVT 354 (939)
Q Consensus 278 lm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA---~~ALd~LvdmLnDe~~~ 354 (939)
+.+.+...- +...+ ..-.-++.+.|..|-++||.++.+.|.+. -..+..|.+.+.++..+
T Consensus 367 i~~~g~p~~---~~~~~--------------~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~e 429 (501)
T PF13001_consen 367 ILSQGWPLI---QDSSS--------------QSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPE 429 (501)
T ss_pred HHhcCcccc---ccccc--------------cCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchH
Confidence 322110000 00000 01123567999999999999998877754 34678899999999999
Q ss_pred HHHHHHHHHhhhhh
Q 002304 355 VRLQALETMHIMVT 368 (939)
Q Consensus 355 VRl~Aa~ALgkI~~ 368 (939)
||...-+||+.+.+
T Consensus 430 vr~sIqeALssl~~ 443 (501)
T PF13001_consen 430 VRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999885
No 136
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.77 E-value=0.66 Score=43.43 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=62.0
Q ss_pred hhccCCCcHHHHHHHHHHHHhccccch-h--hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHH
Q 002304 308 VHGFEDEFYEVRKSACSSLGSLVILSE-K--FAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLG 384 (939)
Q Consensus 308 I~~LeDE~~eVR~aAaeALGkL~~~s~-~--fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~ 384 (939)
+.-|.|+..-||..+...|.++..... . -....++.+...++|+++.|=++||++|..++.. ..++.++.|++
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~----~p~~vl~~L~~ 84 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR----HPDEVLPILLD 84 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH----ChHHHHHHHHH
Confidence 446789999999999999999876444 1 2367788999999999999999999999999952 24557777777
Q ss_pred hcCCCC
Q 002304 385 TLVDNS 390 (939)
Q Consensus 385 ~L~D~~ 390 (939)
...|.+
T Consensus 85 ~y~~~~ 90 (92)
T PF10363_consen 85 EYADPS 90 (92)
T ss_pred HHhCcc
Confidence 666543
No 137
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=91.71 E-value=1.7 Score=52.89 Aligned_cols=167 Identities=17% Similarity=0.116 Sum_probs=109.8
Q ss_pred hhHHHHhhhccCCchhHHHHHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcc
Q 002304 100 RLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHV 179 (939)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~ 179 (939)
..++..-+-+.++++=.|.+-.|+.-=.+++....-+|+|- ....+..++..++.||+-+|-.+++-|+..+.=.-
T Consensus 375 ~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~----~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef 450 (678)
T KOG1293|consen 375 ETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL----KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF 450 (678)
T ss_pred HHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC----ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc
Confidence 44455555556666555555555533356677777788863 34566777888899999999999999998875321
Q ss_pred ccc-chhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHH-HHHHhhcCCCHHHHHHHHH
Q 002304 180 VFE-DVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFI-QLCSMIRDMRMEVRVEAFN 257 (939)
Q Consensus 180 ~~~-~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~-aLc~aL~D~s~~VR~~AA~ 257 (939)
-.. ..-+.......+...+.|.+..+|..++.+|.-+.= . . ++..+-.+..+.+. .|....+|++|.|-..+..
T Consensus 451 s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f--~-~-de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fq 526 (678)
T KOG1293|consen 451 SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF--N-C-DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQ 526 (678)
T ss_pred ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh--c-c-hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHH
Confidence 111 112334457889999999999999988888874321 0 0 00111111123333 4666779999999999999
Q ss_pred HHhcc-cC--CcHHHHHHHh
Q 002304 258 ALGKV-GM--ISEIVLLQTL 274 (939)
Q Consensus 258 ALG~i-~~--vs~~~LlqtL 274 (939)
.|.++ .+ .+.++|.+..
T Consensus 527 llRNl~c~~~~svdfll~~~ 546 (678)
T KOG1293|consen 527 LLRNLTCNSRKSVDFLLEKF 546 (678)
T ss_pred HHHHhhcCcHHHHHHHHHhh
Confidence 99999 44 5677776644
No 138
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.66 E-value=2.7 Score=47.38 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=90.4
Q ss_pred ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhh---cccccchhhhhhHHHHHHHhhCCCCc--hHHHHHHHHHHHhcch
Q 002304 145 RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLK---HVVFEDVDLIQGCCCRAVELLRDHED--CVRCAAVRVVSEWGKM 219 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~---~~~~~~~~l~~~i~~~l~~lL~Ddd~--~VR~aAV~aLg~lg~~ 219 (939)
+..++...+.+.++-..+.-+..|+++++-+.= .+. ....+.+.+.|.+.+.+.|... .+|.+++.+||...=.
T Consensus 83 ~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~-~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv 161 (309)
T PF05004_consen 83 RRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE-DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFV 161 (309)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHh
Confidence 355677777777776666666667666654421 111 2235667788899999998765 5788888888864321
Q ss_pred hhhhccccccc---ccchhHHHHHHHhhc--------CCCHHHHHHHHHHHhccc-CCcHHHHHHHhhHHHhhhhhhhhh
Q 002304 220 LIACIDEKNRI---DCSDVVFIQLCSMIR--------DMRMEVRVEAFNALGKVG-MISEIVLLQTLSKKVLGATKEKKF 287 (939)
Q Consensus 220 ~~~~~~~~~~i---~lvddaf~aLc~aL~--------D~s~~VR~~AA~ALG~i~-~vs~~~LlqtL~kklm~~lk~kr~ 287 (939)
...+.+... .....+|...+.-.. .++..|..+|-.+-|=+- .++...+...
T Consensus 162 --~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-------------- 225 (309)
T PF05004_consen 162 --GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDL-------------- 225 (309)
T ss_pred --hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHH--------------
Confidence 111110000 111112222221111 123567777777666552 2332222111
Q ss_pred ccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhc
Q 002304 288 HSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSL 329 (939)
Q Consensus 288 ~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL 329 (939)
-..+.+.|+..|+-.+.+||.+|-++|+-+
T Consensus 226 ------------~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 226 ------------LEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred ------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 234678899999999999999999998755
No 139
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.53 E-value=2.4 Score=50.12 Aligned_cols=177 Identities=20% Similarity=0.193 Sum_probs=115.2
Q ss_pred HHHHhhhccCCchhHHH-------HHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcC-CCHHHHHHHHHHHH
Q 002304 102 AAAAALAVISDHTVDDR-------FFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKD-PYPYVREAALNGLV 173 (939)
Q Consensus 102 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D-~Dp~VRraAl~AL~ 173 (939)
-+...|.+.+.|+-.+. +...+|+|. ..+|=--++ +++..+.+.+.| .++..|+.|++-|.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~s---fsvWeq~f~--------~iL~~l~EvL~d~~~~~~k~laLrvL~ 355 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGS---FSVWEQHFA--------EILLLLLEVLSDSEDEIIKKLALRVLR 355 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccc---hhHHHHHHH--------HHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 34445557777733333 444557763 455644444 467778888888 99999999999999
Q ss_pred hhhhcc--cccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHH
Q 002304 174 CLLKHV--VFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEV 251 (939)
Q Consensus 174 ~L~~~~--~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~V 251 (939)
++.... ...+ -++.....++++-.|.++.|=..|.+.+-.......+ -.-+.-||..+--.+...
T Consensus 356 ~ml~~Q~~~l~D--stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P-----------~~~I~~i~~~Ilt~D~~~ 422 (516)
T KOG2956|consen 356 EMLTNQPARLFD--STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP-----------LQCIVNISPLILTADEPR 422 (516)
T ss_pred HHHHhchHhhhc--hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc-----------hhHHHHHhhHHhcCcchH
Confidence 997533 2112 1233445677888899988888888875544332111 112334556554466666
Q ss_pred HHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHh
Q 002304 252 RVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGS 328 (939)
Q Consensus 252 R~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGk 328 (939)
-.++.+.+-++ +.++.+-|...+ +...|.+|.+-+.....||++|+.-|-.
T Consensus 423 ~~~~iKm~Tkl~e~l~~EeL~~ll--------------------------~diaP~~iqay~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 423 AVAVIKMLTKLFERLSAEELLNLL--------------------------PDIAPCVIQAYDSTSSTVRKTAVFCLVA 474 (516)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHhh--------------------------hhhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence 67777788887 667777665544 3467888999999999999998876633
No 140
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=16 Score=42.10 Aligned_cols=292 Identities=14% Similarity=0.133 Sum_probs=146.9
Q ss_pred HHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccc-cchhhhhhHHHHHHHh
Q 002304 119 FFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVF-EDVDLIQGCCCRAVEL 197 (939)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~-~~~~l~~~i~~~l~~l 197 (939)
+|.-+|-.|.-+....++.-+. .-.+.++..+. +-..|+..|-..++.+|..+-+.... .+. + -...++.+
T Consensus 82 ll~~l~d~ck~~~A~r~la~~~---ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da---~-g~~vvv~l 153 (461)
T KOG4199|consen 82 LLEQLADECKKSLAHRVLAGKN---GAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDA---E-AMAVVLKL 153 (461)
T ss_pred HHHHHHHHHhhhHHHHHHhccC---CCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhcc---c-cHHHHHHH
Confidence 3444442444444344443322 22455555554 57888999999999999887654321 111 1 13445666
Q ss_pred hCC--CCchHHHHHHHHHHHh--cch---------------hhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHH
Q 002304 198 LRD--HEDCVRCAAVRVVSEW--GKM---------------LIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNA 258 (939)
Q Consensus 198 L~D--dd~~VR~aAV~aLg~l--g~~---------------~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~A 258 (939)
|.| ++++|-...+..+..- +.. ....+.++ +.+.+.+...++|.++.|.+.+|=.--|
T Consensus 154 L~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g-k~~~VRel~~a~r~l~~dDDiRV~fg~a-- 230 (461)
T KOG4199|consen 154 LALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG-KTRTVRELYDAIRALLTDDDIRVVFGQA-- 230 (461)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC-ccHHHHHHHHHHHHhcCCCceeeecchh--
Confidence 654 4555544444433211 110 01223333 3366777888899999998877643222
Q ss_pred HhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHH
Q 002304 259 LGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAG 338 (939)
Q Consensus 259 LG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~ 338 (939)
-|.-+....+..+-+|.. +++. .++++..-.+...|. --.||.+-+.++...|
T Consensus 231 h~hAr~ia~e~~l~~L~E----al~A-------------~~dp~~L~~l~~tl~--~lAVr~E~C~~I~e~G-------- 283 (461)
T KOG4199|consen 231 HGHARTIAKEGILTALTE----ALQA-------------GIDPDSLVSLSTTLK--ALAVRDEICKSIAESG-------- 283 (461)
T ss_pred hHHHHHHHHhhhHHHHHH----HHHc-------------cCCccHHHHHHHHHH--HHHHHHHHHHHHHHcc--------
Confidence 222111111111111110 0000 001111111111111 1256666677766666
Q ss_pred HHHHHHHHHhcC-CCHHHHH---HHHHHHhhhhhcccccchhhH-----HHHHHHhcC--CCCHHHHHHHHHHHhhccCC
Q 002304 339 EALNLLVDMLND-DSVTVRL---QALETMHIMVTCEHLNLEDKH-----MHMFLGTLV--DNSELVRCAARKILKLVKTP 407 (939)
Q Consensus 339 ~ALd~LvdmLnD-e~~~VRl---~Aa~ALgkI~~~~~i~l~E~a-----L~~LL~~L~--D~~~dVR~aA~~aLg~i~l~ 407 (939)
-++.|+..+.| ....+|. .+...|..|+ |+....... ++.|+.++. -.+|.|=+++-.++.-+-+-
T Consensus 284 -Gl~tl~~~i~d~n~~~~r~l~k~~lslLralA--G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR 360 (461)
T KOG4199|consen 284 -GLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA--GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR 360 (461)
T ss_pred -CHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh--CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc
Confidence 36778888888 4556773 3455555665 433333222 233433332 45677777777766665443
Q ss_pred chhHHHHHH-----HHHHHhhccCcc---chHHHHHHHHHhhcccccchHHH
Q 002304 408 KLEFFRLFI-----DGLLENLKIYPQ---DEADVFSVLFFIGRSHGNFAACI 451 (939)
Q Consensus 408 ~~~~l~~~l-----~~LL~~L~~~pe---Dr~~I~~aL~~LG~~H~~lv~~l 451 (939)
..+-.-.++ +-.+.+++.+|. ..+.+.+++++|..+..++..++
T Consensus 361 ~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~ 412 (461)
T KOG4199|consen 361 SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL 412 (461)
T ss_pred CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH
Confidence 332222233 336678899995 47788899999976655555443
No 141
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=17 Score=45.61 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=135.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCc
Q 002304 236 VFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEF 315 (939)
Q Consensus 236 af~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~ 315 (939)
.|.-|-..+..+...|=++||++.-.+.+.....+. .+++++--.|.-..
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~------------------------------pavs~Lq~flssp~ 295 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA------------------------------PAVSVLQLFLSSPK 295 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc------------------------------hHHHHHHHHhcCcH
Confidence 455666778888888888888888777665444321 25556666778888
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHH
Q 002304 316 YEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRC 395 (939)
Q Consensus 316 ~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~ 395 (939)
.-.|-+|+..|-+++...|....-+=.-|-.+.+|.+-.+-.-|+-.|-|=|....+.---.+...+..-+.|++--|--
T Consensus 296 ~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvv 375 (865)
T KOG1078|consen 296 VALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVV 375 (865)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeH
Confidence 99999999999999987776555556678889999999999999999998875332322235666677778888877776
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhhhc
Q 002304 396 AARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEI 459 (939)
Q Consensus 396 aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i 459 (939)
.+..+|...---....+...+..+|.. +-.-+-.++|..++-.+-..+|+.-++-..+|.+.|
T Consensus 376 dai~sLc~~fp~k~~~~m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI 438 (865)
T KOG1078|consen 376 DAIRSLCLKFPRKHTVMMNFLSNMLRE-EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI 438 (865)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 666666654333344445555555554 333344777888888887777777777666666654
No 142
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.22 E-value=17 Score=47.35 Aligned_cols=263 Identities=16% Similarity=0.082 Sum_probs=158.6
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccc-cchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVF-EDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~-~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
+.+.+.+...|.|..|+.-=...+.++...-.. .+++-+..++...-...+-++..|+..|-++|+.+... ++ .+.
T Consensus 613 l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~--~s-~~~ 689 (1176)
T KOG1248|consen 613 LKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS--PS-GEG 689 (1176)
T ss_pred HHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC--Cc-hhh
Confidence 334445566777666665555555544432211 12333445554444555677999999999999988764 11 011
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHH
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGT 306 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ga 306 (939)
.....+++.+..|.+.+++-+..+|+.+-+.|..+ +..+.+.. + ++.....++
T Consensus 690 ~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~-~-------------------------~i~k~I~Ev 743 (1176)
T KOG1248|consen 690 LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHC-D-------------------------LIPKLIPEV 743 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHH-H-------------------------HHHHHHHHH
Confidence 12345688999999999999999999999998887 32332211 0 001111222
Q ss_pred HhhccCCCcHHHHHHHHHHHHhcc--c------cch--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh----cccc
Q 002304 307 FVHGFEDEFYEVRKSACSSLGSLV--I------LSE--KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT----CEHL 372 (939)
Q Consensus 307 LI~~LeDE~~eVR~aAaeALGkL~--~------~s~--~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~----~~~i 372 (939)
++.. .|.+-.-|+.|-+-|-.++ . ..| +..++-++.|...+--+...++...|-|++.+-. ....
T Consensus 744 IL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 744 ILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred HHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 3332 6666666666666554444 1 111 1224445555555556666666665777776653 1122
Q ss_pred cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHhhccCccc-----hHHHHHHHHHhh
Q 002304 373 NLEDKHMHMFLGTLVDNSELVRCAARKILKLV-KTPKLEFFRLFIDGLLENLKIYPQD-----EADVFSVLFFIG 441 (939)
Q Consensus 373 ~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i-~l~~~~~l~~~l~~LL~~L~~~peD-----r~~I~~aL~~LG 441 (939)
..-+..++++...|...+++||++|...++.. .--+..++...++.|++++-+.-.| |..+..-+..++
T Consensus 823 ~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 23346677888899999999999999988775 3335678888888888877776665 344444444444
No 143
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.18 E-value=2.1 Score=52.50 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=79.2
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccc---cchhh-------HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccccc-
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVI---LSEKF-------AGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLN- 373 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~---~s~~f-------A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~- 373 (939)
..|+..|..|.+..|.+-++++|.+.. ..+++ .+..++.|...|.|.++.+|.+|++.+-+|-......
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 468899999999999999999988763 12222 2345788999999999999999999999998632222
Q ss_pred -chhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 374 -LEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 374 -l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
-+-+......+.|.|.+..||+.|..++.+.
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 2235667888999999999999998877664
No 144
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=8.9 Score=48.91 Aligned_cols=290 Identities=17% Similarity=0.166 Sum_probs=157.4
Q ss_pred hhcCCCHHHHH-------------HHHHHHHhhhhcc-cccchhhhhhHHHHHHHhhC------CCCchHHH--HHHHHH
Q 002304 156 LTKDPYPYVRE-------------AALNGLVCLLKHV-VFEDVDLIQGCCCRAVELLR------DHEDCVRC--AAVRVV 213 (939)
Q Consensus 156 ll~D~Dp~VRr-------------aAl~AL~~L~~~~-~~~~~~l~~~i~~~l~~lL~------Ddd~~VR~--aAV~aL 213 (939)
+-+||+.++|+ ||+.-|-.++..+ . ...+.+.+-...-|+ .+...-|. -|.+++
T Consensus 367 we~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~k----e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~v 442 (1010)
T KOG1991|consen 367 WEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGK----ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMV 442 (1010)
T ss_pred HhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcch----hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHH
Confidence 45677777775 5555555555432 2 112233333344444 45555554 588888
Q ss_pred HHhcchhhh-h--cccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCC--c-HHHHHHHhhHHHhhhhhhhhh
Q 002304 214 SEWGKMLIA-C--IDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMI--S-EIVLLQTLSKKVLGATKEKKF 287 (939)
Q Consensus 214 g~lg~~~~~-~--~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~v--s-~~~LlqtL~kklm~~lk~kr~ 287 (939)
|.+.+.+.. + .+.. . .=.+..+-..++++....|..|++.++.++.+ + +..+.
T Consensus 443 gsl~~~L~K~s~~~~~m---E--~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~---------------- 501 (1010)
T KOG1991|consen 443 GSLASILLKKSPYKSQM---E--YFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS---------------- 501 (1010)
T ss_pred HHHHHHHccCCchHHHH---H--HHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH----------------
Confidence 888754321 1 0100 0 11234566688999999999999999999752 2 22322
Q ss_pred ccccchhhhhhhhhcchHHHhhccC-CCcHHHHHHHHHHHHhccccchhh-------HHHHHHHHHHHhcCCCHHHHHHH
Q 002304 288 HSLGAAECFEISASAAAGTFVHGFE-DEFYEVRKSACSSLGSLVILSEKF-------AGEALNLLVDMLNDDSVTVRLQA 359 (939)
Q Consensus 288 ~~~l~~d~~~l~~s~a~gaLI~~Le-DE~~eVR~aAaeALGkL~~~s~~f-------A~~ALd~LvdmLnDe~~~VRl~A 359 (939)
.|...-..+|. |.+.-||..||-||..+-...+.. ....++.|..+.|+-.-+.=...
T Consensus 502 --------------~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 502 --------------EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred --------------HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 23334455665 889999999999996665432211 12234444555554333322222
Q ss_pred HHHH-hhhhh---cccccchhhHHHHHHHhcCC---CCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHH
Q 002304 360 LETM-HIMVT---CEHLNLEDKHMHMFLGTLVD---NSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEAD 432 (939)
Q Consensus 360 a~AL-gkI~~---~~~i~l~E~aL~~LL~~L~D---~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~ 432 (939)
++++ ++.+. +-...+--....+++.++.+ +++..-..+..|.|..+ .+..++..+++.|+.-
T Consensus 568 me~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~---------Ti~Til~s~e~~p~vl-- 636 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILR---------TISTILLSLENHPEVL-- 636 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHH---------HHHHHHHHHhccHHHH--
Confidence 2222 11110 00011223455677777764 66666666666677654 4667777777766542
Q ss_pred HHHHHHHhhcccccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhccccCcCCCCCCChhhhh--hhHh--hhc
Q 002304 433 VFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFS--YAVT--LLG 508 (939)
Q Consensus 433 I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~s~~~~~~~ip~~~fs--h~~~--~~~ 508 (939)
++|. ..+.++|..+++. + . -..|.-.+-++.+-..-.+ .|.|-|.. |-++ |..
T Consensus 637 -----~~le----~~~l~vi~~iL~~-~--------i-~dfyeE~~ei~~~~t~~~~----~Isp~mW~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 637 -----KQLE----PIVLPVIGFILKN-D--------I-TDFYEELLEIVSSLTFLSK----EISPIMWGLLELILEVFQD 693 (1010)
T ss_pred -----HHHH----HHHHHHHHHHHHH-h--------h-HHHHHHHHHHHhhhhhhhc----ccCHHHHHHHHHHHHHHhh
Confidence 2222 2345666666665 1 1 2346666655555444333 37776776 3221 335
Q ss_pred hhhhhhhhhh
Q 002304 509 RISYALSDVM 518 (939)
Q Consensus 509 k~y~~l~D~m 518 (939)
-+..||.|+|
T Consensus 694 ~~~dyf~d~~ 703 (1010)
T KOG1991|consen 694 DGIDYFTDMM 703 (1010)
T ss_pred hhHHHHHHHH
Confidence 6678999988
No 145
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.96 E-value=0.48 Score=37.09 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 340 ALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 340 ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
+++.|++++++++..||..|+.||++|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555543
No 146
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.90 E-value=0.26 Score=38.55 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=30.4
Q ss_pred hhhhcchHHHhhccCCCcHHHHHHHHHHHHhcc
Q 002304 298 ISASAAAGTFVHGFEDEFYEVRKSACSSLGSLV 330 (939)
Q Consensus 298 l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~ 330 (939)
+.+.++++.|+..|++++.+||..|+.+|+.+.
T Consensus 8 i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 8 IVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999875
No 147
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.84 E-value=1.2 Score=56.60 Aligned_cols=98 Identities=22% Similarity=0.119 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhhhhcccccchh--hhhhHHHHHHHhhCCC-CchHHHHHHHHHHHhcchhhhhcccccccccc---h
Q 002304 161 YPYVREAALNGLVCLLKHVVFEDVD--LIQGCCCRAVELLRDH-EDCVRCAAVRVVSEWGKMLIACIDEKNRIDCS---D 234 (939)
Q Consensus 161 Dp~VRraAl~AL~~L~~~~~~~~~~--l~~~i~~~l~~lL~Dd-d~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lv---d 234 (939)
+|.=|..|+=-|..+.+. ...+++ +...+...-...|+|+ .+-.|.-.+-.||.+=..+ .+.+|. +
T Consensus 570 ~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~-------~~Arw~G~r~ 641 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY-------DEARWSGRRD 641 (1387)
T ss_pred CHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc-------chhhhccccc
Confidence 357788888888777643 111111 1111233445668885 7999999999999764322 122332 5
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHhcc-cCCc
Q 002304 235 VVFIQLCSMIRDMRMEVRVEAFNALGKV-GMIS 266 (939)
Q Consensus 235 daf~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs 266 (939)
.|.++|...|.|+.++||.+|.-|||.+ ++.+
T Consensus 642 ~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~ 674 (1387)
T KOG1517|consen 642 NAHEKLILLLSDPVPEVRAAAVFALGTFLSNGS 674 (1387)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHhcccc
Confidence 6899999999999999999999999998 5443
No 148
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=90.45 E-value=7.5 Score=40.40 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=32.4
Q ss_pred hccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 309 HGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 309 ~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
.-++|++.++|++|+..+...... ......++.+...+.|+...||.+...+|..++.
T Consensus 127 ~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 127 KWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 344555666666666665554432 2234455555566666666666666666666664
No 149
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.33 E-value=2.1 Score=43.72 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=68.3
Q ss_pred hHHHHHHHhh-cCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCC
Q 002304 235 VVFIQLCSMI-RDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFED 313 (939)
Q Consensus 235 daf~aLc~aL-~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeD 313 (939)
+-++.|.+.+ ++.+|.+|.+|.+.||-+|.+.+-.-. .......... -++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k-----~~~~~~~~~~------------------------~~~ 60 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK-----SIQKSLDSKS------------------------SEN 60 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh-----cccccCCccc------------------------ccc
Confidence 3556677777 467899999999999999987654321 0000000000 001
Q ss_pred CcHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHhcCCCHH-HHHHHHHHHhhhhh---cccccchhhHHHHHHHhcCC
Q 002304 314 EFYEVRKSACSSLGSLVILSEK-FAGEALNLLVDMLNDDSVT-VRLQALETMHIMVT---CEHLNLEDKHMHMFLGTLVD 388 (939)
Q Consensus 314 E~~eVR~aAaeALGkL~~~s~~-fA~~ALd~LvdmLnDe~~~-VRl~Aa~ALgkI~~---~~~i~l~E~aL~~LL~~L~D 388 (939)
+.........-..+... .+.+ +..-++..|+.+|+|..-. =...+++|+..|-. ......-+..+|.++..+..
T Consensus 61 ~~~~~~~~~l~~~~~~~-~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~ 139 (160)
T PF11865_consen 61 SNDESTDISLPMMGISP-SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT 139 (160)
T ss_pred ccccchhhHHhhccCCC-chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh
Confidence 11111111111111100 1222 2344667777777777543 23345666555431 12344446677888888877
Q ss_pred CCHHHHHHH
Q 002304 389 NSELVRCAA 397 (939)
Q Consensus 389 ~~~dVR~aA 397 (939)
..+..|+..
T Consensus 140 ~~~~~~e~~ 148 (160)
T PF11865_consen 140 CPDSLREFY 148 (160)
T ss_pred CCHHHHHHH
Confidence 776666544
No 150
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=89.68 E-value=3.2 Score=43.61 Aligned_cols=120 Identities=18% Similarity=0.123 Sum_probs=68.0
Q ss_pred HHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhc-cccchhhhhhhhhcchHHHhhccCCC-cHHH
Q 002304 241 CSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFH-SLGAAECFEISASAAAGTFVHGFEDE-FYEV 318 (939)
Q Consensus 241 c~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~-~~l~~d~~~l~~s~a~gaLI~~LeDE-~~eV 318 (939)
--.+.|++.+||.+|+.+|..|=.=+..+|.++-+. +.++.. ..++ .....+--+.-..++.+|+.| ...+
T Consensus 46 t~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~------~~~~~sFtslS-~tLa~~i~~lH~~Ll~~L~~E~~~~~ 118 (182)
T PF13251_consen 46 TCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES------KGPSGSFTSLS-STLASMIMELHRGLLLALQAEKSPPV 118 (182)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc------CCCCCCcccHH-HHHHHHHHHHHHHHHHHHhcccccHH
Confidence 357799999999999999999833245555443211 101000 0000 000001122334677777766 4555
Q ss_pred HHHHHHHHHhcccc------chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 319 RKSACSSLGSLVIL------SEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 319 R~aAaeALGkL~~~------s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
-....+.|.-+... .+++..+.+..+...+.+-|..||..+.-++|-+.
T Consensus 119 l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 119 LTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55556666555432 34455666666777777777777777777777655
No 151
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.96 E-value=0.85 Score=55.64 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=110.8
Q ss_pred hcchHHHhhccC-CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHH
Q 002304 301 SAAAGTFVHGFE-DEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHM 379 (939)
Q Consensus 301 s~a~gaLI~~Le-DE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL 379 (939)
....|.||.-++ .+++-+|..|+-.||.+..-...++.+.-+.|...|.|++..||..+.-++.-+--.|.+.+. -++
T Consensus 932 ~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVK-Gql 1010 (1128)
T COG5098 932 SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVK-GQL 1010 (1128)
T ss_pred HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeec-cch
Confidence 345678999998 889999999999999998767778889999999999999999999999999888766777774 589
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCcc----chHHHHHHHHHh-h-ccc-ccchHHHH
Q 002304 380 HMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQ----DEADVFSVLFFI-G-RSH-GNFAACII 452 (939)
Q Consensus 380 ~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~pe----Dr~~I~~aL~~L-G-~~H-~~lv~~lv 452 (939)
+.+...|+|++..+-.-|+-.+-.+.--+-..-..++ .+..+|.+.++ +-+-|.+-|... . .+| ..+-+.++
T Consensus 1011 g~ma~~L~deda~Isdmar~fft~~a~KdNt~yn~fi-difs~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~L~ 1089 (1128)
T COG5098 1011 GKMALLLTDEDAEISDMARHFFTQIAKKDNTMYNGFI-DIFSTLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKESLF 1089 (1128)
T ss_pred hhhHhhccCCcchHHHHHHHHHHHHHhcccchhhhhH-HHHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877765422211111111 12234443332 233444444433 2 334 34566666
Q ss_pred HHHhhh
Q 002304 453 KEVCQE 458 (939)
Q Consensus 453 ~~Ll~~ 458 (939)
-++...
T Consensus 1090 ~rl~rc 1095 (1128)
T COG5098 1090 LRLLRC 1095 (1128)
T ss_pred HHHHhh
Confidence 666553
No 152
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=88.95 E-value=14 Score=38.38 Aligned_cols=93 Identities=18% Similarity=0.088 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 002304 339 EALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDG 418 (939)
Q Consensus 339 ~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~ 418 (939)
.+.+.+..-.++++..+|..++..+...... .-.+..+..+...+.|++..||+++..+|..++..+......++..
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4678889999999999999999988776632 3335677788888999999999999999999999988885555544
Q ss_pred HHHhhccCccchHHHHHHHHH
Q 002304 419 LLENLKIYPQDEADVFSVLFF 439 (939)
Q Consensus 419 LL~~L~~~peDr~~I~~aL~~ 439 (939)
+....+ |-.+..|+++
T Consensus 197 ---~~~~~~--~~~~r~Ai~~ 212 (213)
T PF08713_consen 197 ---NSDRLS--RWTLRYAIEK 212 (213)
T ss_dssp ---S-------HHHHHHHCTT
T ss_pred ---CcccCc--hhHHHHHHHh
Confidence 333333 5555555543
No 153
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=3.8 Score=46.89 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=90.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhh-hhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 151 TVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDL-IQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 151 ~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l-~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
..+..++++.++.||+.|+.-++...+--......+ -...+..++.+| .|+...||..|..+++.+=....+..
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~---- 202 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ---- 202 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH----
Confidence 344459999999999999999999876321001111 111345555555 78999999999999987644222111
Q ss_pred ccccchhHHHHHHHhhcC--CCHHHHHHHHHHHhccc--CCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 229 RIDCSDVVFIQLCSMIRD--MRMEVRVEAFNALGKVG--MISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~D--~s~~VR~~AA~ALG~i~--~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
...+.-..+..|..++.+ .+.+.++.|+..++.+- ..+..-. ++ +.+..
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~--------~~-------------------~~~f~ 255 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI--------AS-------------------SLGFQ 255 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH--------HH-------------------Hhhhh
Confidence 111223346778899987 77777788888887762 1111110 00 11122
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhcc
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLV 330 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~ 330 (939)
...++...-.+++++.+|+.++..+.
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHH
Confidence 23444445556788898888887655
No 154
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.29 E-value=75 Score=41.11 Aligned_cols=288 Identities=15% Similarity=0.126 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHhhhhccc--ccchhhhh-hHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhH
Q 002304 160 PYPYVREAALNGLVCLLKHVV--FEDVDLIQ-GCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVV 236 (939)
Q Consensus 160 ~Dp~VRraAl~AL~~L~~~~~--~~~~~l~~-~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvdda 236 (939)
.+|+=...|+..+|.+.+--. ....+..+ -+.+.+.-.++++.-..|..|...++.++..-- .+ + .....|
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df--~d---~-~~l~~a 503 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDF--KD---P-NNLSEA 503 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccC--CC---h-HHHHHH
Confidence 456777789999988874210 00001111 133445557899999999999999999985310 00 0 112356
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHhcc-cC--CcHHHHHHHhhHHHhhh----hhhhhhccccchhhhhhhhhcchHHHh
Q 002304 237 FIQLCSMIR-DMRMEVRVEAFNALGKV-GM--ISEIVLLQTLSKKVLGA----TKEKKFHSLGAAECFEISASAAAGTFV 308 (939)
Q Consensus 237 f~aLc~aL~-D~s~~VR~~AA~ALG~i-~~--vs~~~LlqtL~kklm~~----lk~kr~~~~l~~d~~~l~~s~a~gaLI 308 (939)
+....+.|. |.+.-||.+||-||..+ .+ ...+.+.+.+ +.+|.. .|+. ..|.. +.+.+.+|
T Consensus 504 le~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hv-p~~mq~lL~L~ne~------End~L----t~vme~iV 572 (1010)
T KOG1991|consen 504 LELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHV-PPIMQELLKLSNEV------ENDDL----TNVMEKIV 572 (1010)
T ss_pred HHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhh-hHHHHHHHHHHHhc------chhHH----HHHHHHHH
Confidence 776667665 99999999999999887 22 1212111111 111211 1110 01111 22334444
Q ss_pred hccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCC
Q 002304 309 HGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVD 388 (939)
Q Consensus 309 ~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D 388 (939)
.-..+| +---|.+=.+.|+ ++.--++.--+|+++.+--+|+.|+|-+.+ +.+++..+++
T Consensus 573 ~~fseE---lsPfA~eL~q~La--------~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T----------i~Til~s~e~ 631 (1010)
T KOG1991|consen 573 CKFSEE---LSPFAVELCQNLA--------ETFLKVLQTSEDEDESDDDKAIAASGILRT----------ISTILLSLEN 631 (1010)
T ss_pred HHHHHh---hchhHHHHHHHHH--------HHHHHHHhccCCCCccchHHHHHHHHHHHH----------HHHHHHHHhc
Confidence 444332 2222332223332 111122222567889999999999998763 3344444443
Q ss_pred CCHHHHHHHHH-HHhhccCCchhHHHHHHHHHHH---hhccC-ccchHHHHHHHHHhhccc----ccchHHHHHHHhhhc
Q 002304 389 NSELVRCAARK-ILKLVKTPKLEFFRLFIDGLLE---NLKIY-PQDEADVFSVLFFIGRSH----GNFAACIIKEVCQEI 459 (939)
Q Consensus 389 ~~~dVR~aA~~-aLg~i~l~~~~~l~~~l~~LL~---~L~~~-peDr~~I~~aL~~LG~~H----~~lv~~lv~~Ll~~i 459 (939)
- |+|=+.++- .+-.++.--..-..-+.+.++. .+.=+ ++-.-.+|..+.-++.-- -++...+++.|-..+
T Consensus 632 ~-p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~v 710 (1010)
T KOG1991|consen 632 H-PEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYV 710 (1010)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhe
Confidence 3 222222221 1111111000001112222222 22211 233456777777776321 133333444433222
Q ss_pred CCCCCCCCCCCchhHHHHHHHHhhccccC
Q 002304 460 EPDSDDKLGFDNARVAAFLVLAISVPLSC 488 (939)
Q Consensus 460 ~p~~~~e~~~dd~~yiA~Lili~~A~~s~ 488 (939)
.+ +....+++|.|...+..++......
T Consensus 711 -t~-g~~~~~s~~~y~~il~~i~~~~l~~ 737 (1010)
T KOG1991|consen 711 -TY-GTPSLLSNPDYLQILLEIIKKVLTS 737 (1010)
T ss_pred -ee-CchhhhccchHHHHHHHHHHHHHcC
Confidence 11 1224678888999999999888733
No 155
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=87.63 E-value=22 Score=40.15 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhhhcccccchhhhhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHh
Q 002304 165 REAALNGLVCLLKHVVFEDVDLIQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSM 243 (939)
Q Consensus 165 RraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~a 243 (939)
|...+..|..+.... +.+.+...+...+ ++.++.+...++.+++.|.... .....++++..+...
T Consensus 4 r~~~~~~L~~l~~~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--------~~~~~~~~~~~~~kG 69 (339)
T PF12074_consen 4 RVLHASMLSSLPSSS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL--------SSELPKKVVDAFKKG 69 (339)
T ss_pred HHHHHHHHHhCCCcc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--------CcCCCHHHHHHHHHH
Confidence 555666666555411 2334555566666 6789999999999999987643 122347788999999
Q ss_pred hcCCCHHHHHHHHHHHhcc
Q 002304 244 IRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 244 L~D~s~~VR~~AA~ALG~i 262 (939)
+.|+...||+.-...+|+.
T Consensus 70 l~~kk~~vR~~w~~~~~~~ 88 (339)
T PF12074_consen 70 LKDKKPPVRRAWLLCLGEA 88 (339)
T ss_pred hcCCCCcHHHHHHHHHHHH
Confidence 9999999999999999997
No 156
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.27 E-value=1.8 Score=54.38 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=82.1
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCC---chHHHHHHHHHHHhcchhhhhc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHE---DCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd---~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
.+++++++.+.=||+.||-.+++.+..+-.....+-..-+..+.|.++.+=.|.+ -.||..|++.|+.+......
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~-- 986 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT-- 986 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC--
Confidence 4566888899999999999999988776543221111223456788888888888 68999999999998863311
Q ss_pred ccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhc
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGK 261 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~ 261 (939)
..-....++++.+|...|+|+-.-||.+|++.=++
T Consensus 987 --~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 987 --KSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred --cccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 11223447899999999999999999999987554
No 157
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.21 E-value=46 Score=36.05 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=92.3
Q ss_pred hhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcH---HHHHHH
Q 002304 197 LLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISE---IVLLQT 273 (939)
Q Consensus 197 lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~---~~Llqt 273 (939)
+-+..++.+....+++|+.++..- . ....-++..|..+.+.....++..+-+.+.++-.... ..|...
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~--------~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~ 79 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHK--------N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPL 79 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccC--------c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 668999999999999999998631 1 2234466778888888888888888888888733222 232222
Q ss_pred hhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh-cCCC
Q 002304 274 LSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDML-NDDS 352 (939)
Q Consensus 274 L~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmL-nDe~ 352 (939)
+..-. ++... -..=+|++|++..+.+.++..+....|+-+...+..|...+ ++.+
T Consensus 80 L~~~~---~r~~~---------------------~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~ 135 (234)
T PF12530_consen 80 LLLLI---LRIPS---------------------SFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCD 135 (234)
T ss_pred HHHHH---hhccc---------------------ccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcccc
Confidence 21100 00000 00124678888887555554444444555677888899999 7889
Q ss_pred HHHHHHHHHHHhhhhh
Q 002304 353 VTVRLQALETMHIMVT 368 (939)
Q Consensus 353 ~~VRl~Aa~ALgkI~~ 368 (939)
+.++.-|+++|..+-.
T Consensus 136 ~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 136 EVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998774
No 158
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.88 E-value=22 Score=45.05 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=114.9
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccc-cchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCC-cH
Q 002304 190 CCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRID-CSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMI-SE 267 (939)
Q Consensus 190 i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~-lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~v-s~ 267 (939)
-+..++..+.|+..-+|-.|+..|..|-.--.+ ..+ .-..++......|.|++..|=-.|.+.+..+..+ ++
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~------~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKK------ATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcch------hhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence 467778889999999999999999988652100 001 1134677788999999999999999988777665 44
Q ss_pred HHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 002304 268 IVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDM 347 (939)
Q Consensus 268 ~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lvdm 347 (939)
++|..+. ..-. ..+.+ . + ...+. .+| ||=..-+.++|.+..+ +-...+..-+.+
T Consensus 802 ~il~dL~-e~Y~-s~k~k-~--~-~d~~l------kVG-----------Eai~k~~qa~Gel~~~---y~~~Li~tfl~g 855 (982)
T KOG4653|consen 802 DILPDLS-EEYL-SEKKK-L--Q-TDYRL------KVG-----------EAILKVAQALGELVFK---YKAVLINTFLSG 855 (982)
T ss_pred hhHHHHH-HHHH-hcccC-C--C-cccee------hHH-----------HHHHHHHHHhccHHHH---HHHHHHHHHHHh
Confidence 4443222 1100 00110 0 0 00000 011 3333445566666532 123556777888
Q ss_pred hcCCCHHHHHHHHHHHhhhhhcccccchh---hHHHHHHHhc-CCCCHHHHHHHHHHHhhccCCc
Q 002304 348 LNDDSVTVRLQALETMHIMVTCEHLNLED---KHMHMFLGTL-VDNSELVRCAARKILKLVKTPK 408 (939)
Q Consensus 348 LnDe~~~VRl~Aa~ALgkI~~~~~i~l~E---~aL~~LL~~L-~D~~~dVR~aA~~aLg~i~l~~ 408 (939)
.+|++..-|..+..+||.+...-..-+.+ +.+.-++... .|..+-||++|..++..+-.+.
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 99999999999999999987421111122 2233333333 4999999999999887754433
No 159
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.81 E-value=2.5 Score=44.06 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 335 KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 335 ~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
.++++=++.+.++.-+++..||..|++-++-+-..| +.-+.+.+|.++++..|+++.+|+.|...+..+
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQG-LVNPKQCVPTLIALETSPNPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHH
Confidence 345677888899999999999999999999887544 555567899999999999999998887766664
No 160
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.82 E-value=14 Score=47.27 Aligned_cols=236 Identities=17% Similarity=0.111 Sum_probs=142.4
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhhccc------------c-cchhhh---hhHHHHHHHhhCCCCchHHHHHHHHHHH
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLKHVV------------F-EDVDLI---QGCCCRAVELLRDHEDCVRCAAVRVVSE 215 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~~~~------------~-~~~~l~---~~i~~~l~~lL~Ddd~~VR~aAV~aLg~ 215 (939)
.+-..+.+.|..||.-++-.+.+-.+..- . .....+ ...|..+....-|.-+.||+.|+..+..
T Consensus 419 ~~~~r~~~~dv~v~~~els~~~~e~e~dn~~~~s~s~e~qk~~k~~~~v~evg~~~~~~~~rClDkaaavR~~al~s~tk 498 (1529)
T KOG0413|consen 419 EEEERNEQDDVAVKEEELSDSDEENEGDNEENVSKSKEEQKKEKKAKEVKEVGVLYNIVYMRCLDKAAAVRLHALNSLTK 498 (1529)
T ss_pred hhhhhhcchHHHHHHHhcCchHhhhcccchhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44556777787887777664433221100 0 000111 2246667777889999999999998887
Q ss_pred hcchhhhhcccccccccchhHHHHHHHhhc---CCCHHHHHHHHHHHhcccCC------cHHHHHHHhhHHHhhhhhhhh
Q 002304 216 WGKMLIACIDEKNRIDCSDVVFIQLCSMIR---DMRMEVRVEAFNALGKVGMI------SEIVLLQTLSKKVLGATKEKK 286 (939)
Q Consensus 216 lg~~~~~~~~~~~~i~lvddaf~aLc~aL~---D~s~~VR~~AA~ALG~i~~v------s~~~LlqtL~kklm~~lk~kr 286 (939)
+-..... ..++.-||.+.+ |+-..||..+-.++-+=... +.+.|+.. ..-+++. +. +
T Consensus 499 ~l~l~~~-----------~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~-~~ii~d~-~~-~ 564 (1529)
T KOG0413|consen 499 ILQLQSH-----------REAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDE-QQIIQDF-KL-K 564 (1529)
T ss_pred HHHHhcc-----------cchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcc-hhhhhhc-ch-h
Confidence 6653211 224455565554 66688887776666543221 11111100 0000000 00 0
Q ss_pred hccccchhhhhhhhhcchHHHhhccC-CCcHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002304 287 FHSLGAAECFEISASAAAGTFVHGFE-DEFYEVRKSACSSLGSLVILS--EKFAGEALNLLVDMLNDDSVTVRLQALETM 363 (939)
Q Consensus 287 ~~~~l~~d~~~l~~s~a~gaLI~~Le-DE~~eVR~aAaeALGkL~~~s--~~fA~~ALd~LvdmLnDe~~~VRl~Aa~AL 363 (939)
..++ +..+| ...++.-+++.+. |+-.-||++|..-|-..-... ....+..+-.|.++-+|+-..||.+++.+|
T Consensus 565 ~~~~-ge~~~---e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sl 640 (1529)
T KOG0413|consen 565 LMNK-GETRV---EKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSL 640 (1529)
T ss_pred hhhc-cccHH---HHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHH
Confidence 0000 00011 2335666888888 999999999998884322111 111234578889999999999999999999
Q ss_pred hhhhh--cccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 364 HIMVT--CEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 364 gkI~~--~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
+++-- +....++..-+..+.-+++|...+|-..+...+.+.-
T Consensus 641 tel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 641 TELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99864 2334466778899999999999999999988666543
No 161
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.83 E-value=32 Score=42.91 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=78.2
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhcc
Q 002304 232 CSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGF 311 (939)
Q Consensus 232 lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~L 311 (939)
+...+..+||+++.+.+..+|+-|-+.+-++... ++-...+.| ..+..++.|
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss--~~s~davK~--------------------------h~d~Ii~sL 377 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS--EFSIDAVKK--------------------------HQDTIINSL 377 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc--cchHHHHHH--------------------------HHHHHHHHh
Confidence 4456788999999999999999999999988542 111111111 134578888
Q ss_pred C-CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 312 E-DEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 312 e-DE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
. +.|--||+.|++=|-.+.+.+ -|+..++.|+.-+..-+...|..-+--..-++.
T Consensus 378 kterDvSirrravDLLY~mcD~~--Nak~IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 378 KTERDVSIRRRAVDLLYAMCDVS--NAKQIVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred ccccchHHHHHHHHHHHHHhchh--hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 8 888999999999887776532 256788888888888888888877766666663
No 162
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.46 E-value=2.8 Score=43.81 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=56.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGK 218 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~ 218 (939)
++.+++.+-++++.||.+|++-+.-+-..|...| ..|.|.++.+..|+++.+|..|.+.+..+.+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999888876333 3488999999999999999999999998765
No 163
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=83.97 E-value=77 Score=36.96 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=66.0
Q ss_pred hhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhH-HHHHHHhhCCC-CchHHHHHHHHHHHhcchhhhhcccccccccc
Q 002304 156 LTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGC-CCRAVELLRDH-EDCVRCAAVRVVSEWGKMLIACIDEKNRIDCS 233 (939)
Q Consensus 156 ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i-~~~l~~lL~Dd-d~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lv 233 (939)
++.|. ..||.+|.+.+.-+-........-....+ +=....+-+|. .+.=|.+|.+.+-.|-+.-... -.+.
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~------~~~~ 106 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP------KEIP 106 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc------ccCC
Confidence 55555 99999999999766543221100000000 00123333443 4556899999888776531100 1123
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHH
Q 002304 234 DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIV 269 (939)
Q Consensus 234 ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~ 269 (939)
.-++.+|+...++++-+.|..|-+.|.++.-..++.
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 557788999999999999999999999987544444
No 164
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=82.65 E-value=24 Score=39.10 Aligned_cols=207 Identities=19% Similarity=0.186 Sum_probs=108.7
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHhhhhccc--ccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 151 TVCLGLTKDPYPYVREAALNGLVCLLKHVV--FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 151 ~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~--~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
..+..++.++|+.+|..|+.-|..+-..-- .+...-+.-+..-++..| ||.+.|.-+ +++|..+..+..-..
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D~~~~~~~-l~gl~~L~~~~~~~~---- 75 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DDHACVQPA-LKGLLALVKMKNFSP---- 75 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-ccHhhHHHH-HHHHHHHHhCcCCCh----
Confidence 356789999999999999999987765321 111222334555567777 556666665 666665553210000
Q ss_pred ccccchhHHHHHHHhhc--CCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHH----Hhhhhh-hhhhcc-----------
Q 002304 229 RIDCSDVVFIQLCSMIR--DMRMEVRVEAFNALGKV-GMISEIVLLQTLSKK----VLGATK-EKKFHS----------- 289 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~--D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kk----lm~~lk-~kr~~~----------- 289 (939)
......+..+.+-.+ --...+|..+.+.|..+ .+.. +.+ +.+... .+.... +|.++.
T Consensus 76 --~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~-~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 76 --ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR-EAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred --hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH-HHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 001223333333222 33356777777777665 2211 111 111111 111111 111110
Q ss_pred -------ccchhhhhhhhhcchH-HHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002304 290 -------LGAAECFEISASAAAG-TFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALE 361 (939)
Q Consensus 290 -------~l~~d~~~l~~s~a~g-aLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ 361 (939)
+...+-|+... .--| .|-.-=.|++.-=|..=..+|.+--..++.||.-++|.|++-|..+...|+..+.+
T Consensus 152 ~~~~~~~~~~e~lFd~~~-cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 152 LQEFDISEFAEDLFDVFS-CYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred HHhcccchhHHHHHHHhh-heeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 00111121100 0000 12223345554444445555544333478899999999999999999999999999
Q ss_pred HHhhhhh
Q 002304 362 TMHIMVT 368 (939)
Q Consensus 362 ALgkI~~ 368 (939)
+|..-..
T Consensus 231 tL~~c~~ 237 (262)
T PF14500_consen 231 TLKACIE 237 (262)
T ss_pred HHHHHHH
Confidence 9998664
No 165
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.61 E-value=1.8e+02 Score=39.27 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhc-cCCCccccccchHHHHHHHHHHHHHhh---hhhhc
Q 002304 633 ILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFV-PAKNIHHYEQGELEFLLGKLDRSLREL---RCRFL 708 (939)
Q Consensus 633 ~L~~~~~eL~~l~~~~~~~~g~~~f~~~Yl~~~~ll~k~~~~~~-~~~~~~~~~~~~~~~~l~kL~~~~~~l---~~~f~ 708 (939)
..+.-..-+.++++.-+.-.-...++..+.++..-+.|+..+.. +..+.+.+. .+..-+..+..+..+- ...|.
T Consensus 510 ~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~--~l~~~v~~~l~e~~~~~~s~nlF~ 587 (1266)
T KOG1525|consen 510 SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCK--ELLITVKEILFELGRKKQSKNLFS 587 (1266)
T ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHH--HHHHHHHHHHHHHhhhccccchHH
Confidence 34444456667777777777778888888888899999888776 222322222 2222123333222222 23799
Q ss_pred CCChhHHHHHHH--HHHHHHhhhhhhheeh-------------hhhhhhHhHHHHHHHHHH
Q 002304 709 GLSKEEELHVLE--LMLVSCLLRLSKFEIC-------------FYYTTMRNLSSTISHLEF 754 (939)
Q Consensus 709 Gls~~e~~~V~e--l~L~a~al~L~~~~~~-------------~~~~~l~~~~~~i~~ve~ 754 (939)
+++.+-+..+.+ +...+.+..+++..-. |+..+++....++..+-.
T Consensus 588 ~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~ 648 (1266)
T KOG1525|consen 588 SMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSS 648 (1266)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhh
Confidence 999999999988 6666777777777422 445566666555555544
No 166
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=82.22 E-value=63 Score=41.46 Aligned_cols=230 Identities=12% Similarity=0.089 Sum_probs=137.0
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhc--CCCHHHHHHHHHHHhcc--cCCcHHH
Q 002304 194 AVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIR--DMRMEVRVEAFNALGKV--GMISEIV 269 (939)
Q Consensus 194 l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~--D~s~~VR~~AA~ALG~i--~~vs~~~ 269 (939)
.+....+.|..||..|-..|-.|... +..+.+||+... |.+...|+.|+-.|-+. +..++..
T Consensus 9 ~L~~~ls~d~~vr~~AE~~l~qle~~--------------~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~ 74 (1005)
T KOG2274|consen 9 LLSGSLSADQNVRSQAETQLKQLELT--------------EGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNF 74 (1005)
T ss_pred HHHhhcCCChhHHHHHHHHHhccccc--------------hHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChH
Confidence 45557899999999999999887751 335568888664 56888899998666554 1111111
Q ss_pred HHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHh
Q 002304 270 LLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL-SEKFAGEALNLLVDML 348 (939)
Q Consensus 270 LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~-s~~fA~~ALd~LvdmL 348 (939)
+....++...++. ..-.-+-|.++|-|++.-+|.++++++..++.. .|+==.+.++.+.+++
T Consensus 75 --------------E~fr~~~~~~e~~---K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l 137 (1005)
T KOG2274|consen 75 --------------EAFRYPLIVSEEV---KALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLL 137 (1005)
T ss_pred --------------hhccCCCcccHHH---HHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 1111111111111 112345788888899999999999999998842 3333367899999999
Q ss_pred cCCCHHHHHHHHHHHhhhhhc---------ccccchhhHHHHHHHhcCCCCHHHHHHHHH--HHhhcc-----CCch---
Q 002304 349 NDDSVTVRLQALETMHIMVTC---------EHLNLEDKHMHMFLGTLVDNSELVRCAARK--ILKLVK-----TPKL--- 409 (939)
Q Consensus 349 nDe~~~VRl~Aa~ALgkI~~~---------~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~--aLg~i~-----l~~~--- 409 (939)
.+.+..==..|.++|..+... +.+.+ ..+..+.....-.+.-.|-.++. .+..|- ....
T Consensus 138 ~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l--~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~ 215 (1005)
T KOG2274|consen 138 SSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSL--AEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAE 215 (1005)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHHHhcccccch--hhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHH
Confidence 999999889999999998741 11111 12333334444444444444431 111110 0000
Q ss_pred -------hHHHHHHHHHHH----hhccCccchHHHHHHHHHhhcccccchHHHHHHHh
Q 002304 410 -------EFFRLFIDGLLE----NLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVC 456 (939)
Q Consensus 410 -------~~l~~~l~~LL~----~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll 456 (939)
.|+....+.+.. +...|-.+|..+..|+.+++.+-|.+..+-+..++
T Consensus 216 ~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~ 273 (1005)
T KOG2274|consen 216 HVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMF 273 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh
Confidence 112222222222 22222245888999999999887777776555553
No 167
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.51 E-value=4.6 Score=44.61 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhhhh-cccccchhhHHHHHH----HhcCCCCHHHHHHHHHHHhhccC--CchhHHHHHH
Q 002304 344 LVDMLNDDSVTVRLQALETMHIMVT-CEHLNLEDKHMHMFL----GTLVDNSELVRCAARKILKLVKT--PKLEFFRLFI 416 (939)
Q Consensus 344 LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~i~l~E~aL~~LL----~~L~D~~~dVR~aA~~aLg~i~l--~~~~~l~~~l 416 (939)
|-.-|+++++.+|.+|++.|+.+-. .....+.+.++..|+ ..|+ +..-+..++..+....+. -.......++
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DHACVQPALKGLLALVKMKNFSPESAVKIL 82 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cHhhHHHHHHHHHHHHhCcCCChhhHHHHH
Confidence 4455778888888888887776653 112234555555444 4553 344455444444333332 2344455666
Q ss_pred HHHHHhhc--cCc-cchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCCCCCCchhH
Q 002304 417 DGLLENLK--IYP-QDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARV 474 (939)
Q Consensus 417 ~~LL~~L~--~~p-eDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~y 474 (939)
+.+..+.+ .++ .+|..+++.+..+-.+|......+=+.++..+=...+|| .||+=
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gE---kDPRn 140 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGE---KDPRN 140 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccC---CCHHH
Confidence 77666333 454 458999999999988775444333233333222234455 46653
No 168
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.05 E-value=44 Score=38.94 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=62.7
Q ss_pred hhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHH--HHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccccc---c
Q 002304 300 ASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAG--EALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLN---L 374 (939)
Q Consensus 300 ~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~--~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~---l 374 (939)
..+.+.++|...|+++...|..|++.|++++..+|++.. ..+..|++.+-|..-.+-...+.++-.+-+..... -
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 456777899999999999999999999999998998764 34788888888866555556666666655421110 1
Q ss_pred hhhHHHHHHHhcCCC
Q 002304 375 EDKHMHMFLGTLVDN 389 (939)
Q Consensus 375 ~E~aL~~LL~~L~D~ 389 (939)
..--++.+++-+.|.
T Consensus 186 ~~~dL~~l~apftd~ 200 (371)
T PF14664_consen 186 PGFDLESLLAPFTDF 200 (371)
T ss_pred CCccHHHHHHhhhhh
Confidence 112355555555555
No 169
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.79 E-value=36 Score=44.38 Aligned_cols=207 Identities=18% Similarity=0.174 Sum_probs=135.0
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchH---------------HHHHH
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCV---------------RCAAV 210 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~V---------------R~aAV 210 (939)
.+.++..+.++...+---+|..|=-+..++... +...+.++.+-.+..= |.+.+
T Consensus 198 md~~is~LtamSdSqvR~fRhTaTl~~mklmt~-----------Lv~va~~Ls~~~~~tskQleaEr~k~r~~rarle~L 266 (1048)
T KOG2011|consen 198 MDDLISWLTAMSDSQVRAFRHTATLAAMKLMTA-----------LVSVALNLSSHNDKTSKQLEAERNKSRGNRARLESL 266 (1048)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHhcccccchHHHHHH
Confidence 456666667666666666777776666555432 2233444443111111 33333
Q ss_pred HHHHHhcchhhhhcccccccccchhHHHHHH-----HhhcCCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhh
Q 002304 211 RVVSEWGKMLIACIDEKNRIDCSDVVFIQLC-----SMIRDMRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKE 284 (939)
Q Consensus 211 ~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc-----~aL~D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~ 284 (939)
......-+. ++.-+.+.+..++ +.-+|-++.+|......||.= ...|.-+|...
T Consensus 267 l~~r~etqe---------~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~ds----------- 326 (1048)
T KOG2011|consen 267 LMLRKETQE---------QQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDS----------- 326 (1048)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcch-----------
Confidence 333321111 1112233444444 467899999999999999985 66776665322
Q ss_pred hhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc------hhhHHHHHHHHHHHh-cCCCHHHHH
Q 002304 285 KKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS------EKFAGEALNLLVDML-NDDSVTVRL 357 (939)
Q Consensus 285 kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s------~~fA~~ALd~LvdmL-nDe~~~VRl 357 (939)
..-.+=-.|.|...+||...+.+|-.|-... ..|..+-=+-++.|. .|-+..||.
T Consensus 327 ------------------YLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vra 388 (1048)
T KOG2011|consen 327 ------------------YLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRA 388 (1048)
T ss_pred ------------------HHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 2223334789999999999999997766431 123455557788888 888999999
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 358 QALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 358 ~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
..+..+-.+...| -+.++-+..+..++=|.++.||.++...|..
T Consensus 389 v~L~~~~~~~~~g--~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 389 VGLVLCLLLSSSG--LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHHHhccc--ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 9999988887544 4456678899999999999999999887754
No 170
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=80.62 E-value=82 Score=38.96 Aligned_cols=219 Identities=16% Similarity=0.080 Sum_probs=132.9
Q ss_pred chhHHHHHH-----HhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHH
Q 002304 233 SDVVFIQLC-----SMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTF 307 (939)
Q Consensus 233 vddaf~aLc-----~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaL 307 (939)
..+....+| +...|.+..+|..+..+|+.-.+.-++++...+ ....+
T Consensus 268 ~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~----------------------------~lry~ 319 (740)
T COG5537 268 IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL----------------------------GLRYN 319 (740)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh----------------------------ccccc
Confidence 344555555 467899999999999999987443333432211 12233
Q ss_pred hhccCCCcHHHHHHHHHHHHhccccchh------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHH
Q 002304 308 VHGFEDEFYEVRKSACSSLGSLVILSEK------FAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHM 381 (939)
Q Consensus 308 I~~LeDE~~eVR~aAaeALGkL~~~s~~------fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~ 381 (939)
--+|.|..-.||.-....|-.+....|. |..+--+.+++++--+..-||..+++.+..+...|.+ .......
T Consensus 320 GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L--~~SeIlI 397 (740)
T COG5537 320 GWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVL--SSSEILI 397 (740)
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccc--chhHHHH
Confidence 4478899999999998888776654332 3345566777777766666999999999999876644 4456777
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhc----------cCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHh-----------
Q 002304 382 FLGTLVDNSELVRCAARKILKLV----------KTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFI----------- 440 (939)
Q Consensus 382 LL~~L~D~~~dVR~aA~~aLg~i----------~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~L----------- 440 (939)
+..+.=|..|+=|+...+.+..+ +.+....-+..+..+.+....++.+..-+|.-+.++
T Consensus 398 vsscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~n~lL~a~~qgse~~f~v~~~iFsr~~~llk~v~ls~eas 477 (740)
T COG5537 398 VSSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKTNRLLEAMKQGSERYFVVCEEIFSRFVHLLKKVELSFEAS 477 (740)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 77788888888554433333221 222222223344444445555663222222221111
Q ss_pred ---------hcccccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhh
Q 002304 441 ---------GRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAIS 483 (939)
Q Consensus 441 ---------G~~H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~ 483 (939)
=.++++|..|++..++..... ...-+.| ...++|.+.+.-|
T Consensus 478 vy~~t~iR~f~~ng~f~~pii~s~l~~~~i-~si~~te-~~Ediakl~l~dn 527 (740)
T COG5537 478 VYRITEIRRFFSNGEFTCPIIKSFLISEGI-GSIHPTE-VKEDIAKLRLMDN 527 (740)
T ss_pred hhHHHHHHHHHhcCceechhHHHHHHHhhc-ccccchh-HHHHHHHHHhhcc
Confidence 123457999999999876322 1111111 2468999999888
No 171
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.92 E-value=11 Score=42.65 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=87.0
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccccchhhH----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchh--
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLED-- 376 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E-- 376 (939)
++--....|.+++|++...+...+..|..-.++.- ++.+-++++-++.....|-..|+-+++.|-...+-.+.+
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445568999999999999999998886555432 567788999999999999999999999998633333332
Q ss_pred -hHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccC
Q 002304 377 -KHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIY 426 (939)
Q Consensus 377 -~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~ 426 (939)
..+-.|+.-=.+++..||..|.++|..+-.+-.. +.++..|++.+.++
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--~~~L~~L~~~~~~~ 217 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--QKLLRKLIPILQHS 217 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--HHHHHHHHHHHhhh
Confidence 2333344444578889999999998876433221 23677777765543
No 172
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=79.38 E-value=53 Score=39.36 Aligned_cols=102 Identities=19% Similarity=0.126 Sum_probs=70.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHH----HHHhhCC-CCchHHHHHHHHHHHhcchhhhhc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCR----AVELLRD-HEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~----l~~lL~D-dd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
...+.++-.++-..=|..|+..|..+--.+.+ ++++..+.. +.+-|.| .++..|..|.+.|+.+-...
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e~sf---svWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q---- 361 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLCEGSF---SVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ---- 361 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHHccch---hHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc----
Confidence 34555666676788899999988887665532 566654444 5777889 99999999999999876421
Q ss_pred ccccccccchhHHHHH---HHhhcCCCHHHHHHHHHHHhcc
Q 002304 225 DEKNRIDCSDVVFIQL---CSMIRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 225 ~~~~~i~lvddaf~aL---c~aL~D~s~~VR~~AA~ALG~i 262 (939)
..++.|++-.++ .++-.|....|=..|++.+-..
T Consensus 362 ----~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~ 398 (516)
T KOG2956|consen 362 ----PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTT 398 (516)
T ss_pred ----hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 234445544444 4566798888877777765443
No 173
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=79.36 E-value=2 Score=34.53 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=24.2
Q ss_pred ChhhHHHHHHhhhcCCCHHHHHHHHHHH
Q 002304 145 RPHLLFTVCLGLTKDPYPYVREAALNGL 172 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~Dp~VRraAl~AL 172 (939)
..+.+...+...+.|++|.||.+|++.|
T Consensus 15 ~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 15 DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3457888999999999999999999864
No 174
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.87 E-value=27 Score=35.79 Aligned_cols=41 Identities=7% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhh
Q 002304 326 LGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIM 366 (939)
Q Consensus 326 LGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI 366 (939)
+..++.+.-.|-.+.+|.++.++..-....|.--..-|+.+
T Consensus 115 f~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 115 FKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34566666667788999999999877777777666666654
No 175
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.50 E-value=35 Score=43.12 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=52.6
Q ss_pred hhcchHHHhhccCCCcHHHHHHHHHHHHhccc-cchhh------HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 300 ASAAAGTFVHGFEDEFYEVRKSACSSLGSLVI-LSEKF------AGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 300 ~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~-~s~~f------A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
..+-+..++..++--+..||..|+.=+..+-. +.++. ...++.-|++.+.|..+-+|-.|+--|..+..
T Consensus 120 ~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 120 NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 34566678888998899999999998865442 22221 13467889999999999999999988887763
No 176
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=78.20 E-value=27 Score=38.06 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=16.6
Q ss_pred hhcCCCHHHHHHHHHHHHhhh
Q 002304 156 LTKDPYPYVREAALNGLVCLL 176 (939)
Q Consensus 156 ll~D~Dp~VRraAl~AL~~L~ 176 (939)
+++|+||.|-+.|+.+...+.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy 21 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIY 21 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 578999999999999886543
No 177
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.04 E-value=97 Score=40.87 Aligned_cols=269 Identities=17% Similarity=0.108 Sum_probs=159.9
Q ss_pred ccCCchhHHHHHHHh-hcCCch--HHH----HHHh-hh---ccccCC-ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhh
Q 002304 109 VISDHTVDDRFFVSL-CFASSV--SVR----LWLL-RN---AERFNV-RPHLLFTVCLGLTKDPYPYVREAALNGLVCLL 176 (939)
Q Consensus 109 ~~~~~~~~~~~~~~~-~~~~~~--~~~----~~~~-~~---~~~~~v-~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~ 176 (939)
+.++..+...|+.++ |-.... +.+ +-++ .+ |+-... .-..+......+.+..++.|++-|-+=|..+.
T Consensus 603 ~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~ 682 (1176)
T KOG1248|consen 603 TVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELS 682 (1176)
T ss_pred hcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHh
Confidence 666777778887776 433333 211 1111 11 110000 11223334456677779999999999998887
Q ss_pred hc--ccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHH
Q 002304 177 KH--VVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVE 254 (939)
Q Consensus 177 ~~--~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~ 254 (939)
.. +.-.....+..++..+...+++-+..+|..+...|..+=+...+. ...++...+..++=.++|-+..-|+.
T Consensus 683 ~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e-----~~~~i~k~I~EvIL~~Ke~n~~aR~~ 757 (1176)
T KOG1248|consen 683 SSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAE-----HCDLIPKLIPEVILSLKEVNVKARRN 757 (1176)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHhcccccHHHHhh
Confidence 65 221223455678888888889999999999888887765432210 11122223333333449999999999
Q ss_pred HHHHHhcccC--CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcccc
Q 002304 255 AFNALGKVGM--ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL 332 (939)
Q Consensus 255 AA~ALG~i~~--vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~ 332 (939)
|.+.|-.|+. .+-+. ..++ ..+.+ ...+.-+..+|--+...++...+-+++.+...
T Consensus 758 Af~lL~~i~~i~~~~d~------------g~e~------~~~~l----nefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 758 AFALLVFIGAIQSSLDD------------GNEP------ASAIL----NEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHHHHHHHhhhcc------------cccc------hHHHH----HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 9999988873 11000 0000 00000 11122233344444455665555666554432
Q ss_pred -----chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc---cc-cchhhHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 333 -----SEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCE---HL-NLEDKHMHMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 333 -----s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~---~i-~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
+.++-.+.++.+.-.+.-...+||..|+..+..+-..- .+ ...++.++.++..+.|-...+|.++..+|..
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22333556666677788999999999999888765200 00 1235788999999999999999999988876
Q ss_pred c
Q 002304 404 V 404 (939)
Q Consensus 404 i 404 (939)
+
T Consensus 896 L 896 (1176)
T KOG1248|consen 896 L 896 (1176)
T ss_pred H
Confidence 4
No 178
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=77.80 E-value=73 Score=34.49 Aligned_cols=95 Identities=20% Similarity=0.127 Sum_probs=62.4
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhhcc-cccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccccc
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLKHV-VFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRI 230 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~~~-~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i 230 (939)
.+.+..+..+|.+....+.+|..++..+ . ....+...+..+.+.+...++.-+.+.+-.+-..-
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~-----~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~---------- 69 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHKNV-----CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN---------- 69 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccCcc-----chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC----------
Confidence 3445888999999999999999998765 3 12234566666677777888778888777654310
Q ss_pred ccchhHHHHHHH-------------hhcCCCHHHHHHHHHHHhcccC
Q 002304 231 DCSDVVFIQLCS-------------MIRDMRMEVRVEAFNALGKVGM 264 (939)
Q Consensus 231 ~lvddaf~aLc~-------------aL~D~s~~VR~~AA~ALG~i~~ 264 (939)
+.+|+.|-. .=+|..|.+....|.+...+..
T Consensus 70 ---~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~ 113 (234)
T PF12530_consen 70 ---DRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICC 113 (234)
T ss_pred ---chHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHH
Confidence 112222221 1246778888887777777743
No 179
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=76.68 E-value=44 Score=35.57 Aligned_cols=142 Identities=14% Similarity=0.052 Sum_probs=89.8
Q ss_pred hcCCchHHHHHHhhh-ccccCCC-hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcc--------------c----ccc
Q 002304 124 CFASSVSVRLWLLRN-AERFNVR-PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHV--------------V----FED 183 (939)
Q Consensus 124 ~~~~~~~~~~~~~~~-~~~~~v~-~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~--------------~----~~~ 183 (939)
++|.+++.|=-+.+. .+..... .+++...+..+.+.+.-+.|-.|++-|.+..... . ..|
T Consensus 20 f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~~~Wd~vD 99 (208)
T cd07064 20 FYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTKSWWDTVD 99 (208)
T ss_pred cCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCchHHHHH
Confidence 889988754444443 3433332 4566777778888888889999887665431100 0 000
Q ss_pred h---hh-------hhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHH
Q 002304 184 V---DL-------IQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRV 253 (939)
Q Consensus 184 ~---~l-------~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~ 253 (939)
. .+ .+...+.+.+..+|++--+|+.|+-+.-.+.+. .. .+..+.-+...++|++..|++
T Consensus 100 ~~~~~i~g~~~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----------~~-~~~l~~~~~~~~~d~e~fI~K 168 (208)
T cd07064 100 SLAKVVGGILLADYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK----------TD-TDLLFEIILANLGSKEFFIRK 168 (208)
T ss_pred HHHHHHhHHHHhCChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----------cC-HHHHHHHHHHhCCChHHHHHH
Confidence 0 00 001124556667888899999998765444431 11 134555566788999999999
Q ss_pred HHHHHHhcccCCcHHHHHHHhhH
Q 002304 254 EAFNALGKVGMISEIVLLQTLSK 276 (939)
Q Consensus 254 ~AA~ALG~i~~vs~~~LlqtL~k 276 (939)
+.+++|.+++...++.+..-|.+
T Consensus 169 AiGW~LRe~~k~d~~~V~~fl~~ 191 (208)
T cd07064 169 AIGWALREYSKTNPDWVRDFVAA 191 (208)
T ss_pred HHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999987777776665543
No 180
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=76.29 E-value=3.1 Score=31.49 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=14.6
Q ss_pred hcchHHHhhccCCCcHHHHHHHHHHHHhc
Q 002304 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSL 329 (939)
Q Consensus 301 s~a~gaLI~~LeDE~~eVR~aAaeALGkL 329 (939)
.+++++|+..|..++.+|+..|+.+|+.+
T Consensus 11 ~g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 11 AGGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34445555555544555555555555444
No 181
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=75.25 E-value=1.2e+02 Score=32.34 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHH
Q 002304 378 HMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFI 416 (939)
Q Consensus 378 aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l 416 (939)
....+...+.|+...|++|+..+|...+-.+..-+...+
T Consensus 151 l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 151 LFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 444566677788888888887877777766655543333
No 182
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=74.63 E-value=23 Score=43.91 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=116.4
Q ss_pred hhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-Cc
Q 002304 188 QGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-IS 266 (939)
Q Consensus 188 ~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs 266 (939)
..+.|.++++++-.|..||..=..-+..+.+.+... -+-+.+|..+...+.|-+..+|...-+.+..+.. ++
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~-------~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ-------ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH-------hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 346788999999999999998777777776654221 1225688899999999999999999888877632 33
Q ss_pred HHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc-hhhHHHHH-HHH
Q 002304 267 EIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS-EKFAGEAL-NLL 344 (939)
Q Consensus 267 ~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s-~~fA~~AL-d~L 344 (939)
.+. |.-.++ ..|-..=-|+...+|.....=||+++... +..-..++ -..
T Consensus 402 ~~~----Ln~Ell-------------------------r~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~af 452 (690)
T KOG1243|consen 402 KRN----LNGELL-------------------------RYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAF 452 (690)
T ss_pred hhh----hcHHHH-------------------------HHHHhhCccccCcccccceeeecccccccchhhhccccchhh
Confidence 332 111222 23333334888888888888888877431 11111111 223
Q ss_pred HHHhcCCCHHHHHHHHHHHhhhhhcc-cccchhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 002304 345 VDMLNDDSVTVRLQALETMHIMVTCE-HLNLEDKHMHMFLGTLVDNSELVRCAARKIL 401 (939)
Q Consensus 345 vdmLnDe~~~VRl~Aa~ALgkI~~~~-~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aL 401 (939)
...+.|+-.--|.+++.+|..-.... .-...-..+|.+.-.+.|++..||..+-.++
T Consensus 453 tralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 453 TRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAI 510 (690)
T ss_pred hhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHH
Confidence 34788888888888888888665411 2222335677778888888888887775533
No 183
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=74.45 E-value=3.8 Score=31.00 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 340 ALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 340 ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
+++.|+.+++.+++.++..|+.+|++|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999885
No 184
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.71 E-value=13 Score=36.92 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=36.8
Q ss_pred HHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc
Q 002304 325 SLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH 371 (939)
Q Consensus 325 ALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~ 371 (939)
-|.++.-.++.-..+.++.|...|+|...+|+.+|++-|..+...|.
T Consensus 24 Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 24 EIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 34444444444456899999999999999999999999999886553
No 185
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.40 E-value=16 Score=41.67 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=77.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNR 229 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~ 229 (939)
...+.+++.++.|.||++|++.|..+-.++...=..-.....+.+.+++.|.++ =..|+.+|+.++..- +-++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-----~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-----ELRK 77 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-----HHHH
Confidence 345678999999999999999998876552100000012356778899999999 556788888776521 0001
Q ss_pred cccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCc--HHHHHHHhh
Q 002304 230 IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMIS--EIVLLQTLS 275 (939)
Q Consensus 230 i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs--~~~LlqtL~ 275 (939)
.+.++-..-+..++.|+-|-.-..++..|.++.... ...|.+.+.
T Consensus 78 -~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~ 124 (353)
T KOG2973|consen 78 -KLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLT 124 (353)
T ss_pred -HHHHHHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcc
Confidence 122334455778899999999999999999985532 334444444
No 186
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.85 E-value=20 Score=41.22 Aligned_cols=184 Identities=16% Similarity=0.112 Sum_probs=100.6
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhhcc--cccchhhhhhHHHH-HHHhhCC--CCchHHHHHHHHHHHhcchhhhhccc
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLKHV--VFEDVDLIQGCCCR-AVELLRD--HEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~~~--~~~~~~l~~~i~~~-l~~lL~D--dd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
.+..-++| ++..|+.-.+++....... ...+.......... ....+++ -+..=|..|..-|-.+-..+-..+
T Consensus 42 ~~~~~~~~-~ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAn-- 118 (342)
T KOG2160|consen 42 MAEAKLKD-EKEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNAN-- 118 (342)
T ss_pred hhhhhccC-cccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHH--
Confidence 33334443 3667777777766544211 00111111111222 2233332 244456667776666554321110
Q ss_pred ccccccc-hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchH
Q 002304 227 KNRIDCS-DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAG 305 (939)
Q Consensus 227 ~~~i~lv-ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~g 305 (939)
.++ ......+...+++.+..||+.||+.+|..-.=-+..-++. +..++..
T Consensus 119 ----dl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v-------------------------~E~~~L~ 169 (342)
T KOG2160|consen 119 ----DLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQV-------------------------IELGALS 169 (342)
T ss_pred ----hHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHH-------------------------HHcccHH
Confidence 011 1123355669999999999999999999832111111111 2334455
Q ss_pred HHhhcc-CCCcHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHhcC--CCHHHHHHHHHHHhhhh
Q 002304 306 TFVHGF-EDEFYEVRKSACSSLGSLVILSEK-----FAGEALNLLVDMLND--DSVTVRLQALETMHIMV 367 (939)
Q Consensus 306 aLI~~L-eDE~~eVR~aAaeALGkL~~~s~~-----fA~~ALd~LvdmLnD--e~~~VRl~Aa~ALgkI~ 367 (939)
.|+..| .|..-.||..|..|++.+--.++. +.......|.+.+++ .+...+.+|+.=++.+-
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 555555 477789999999999887643322 112347789999999 45555566777777665
No 187
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=71.19 E-value=4.9 Score=47.51 Aligned_cols=92 Identities=23% Similarity=0.349 Sum_probs=68.4
Q ss_pred hhcCCch-HHHHHHhhhccccCCChhhHHHHHHhhh-cCCCHHHHHHHHHHHHhhhhcccccchhhhh--hHHHHHHHhh
Q 002304 123 LCFASSV-SVRLWLLRNAERFNVRPHLLFTVCLGLT-KDPYPYVREAALNGLVCLLKHVVFEDVDLIQ--GCCCRAVELL 198 (939)
Q Consensus 123 ~~~~~~~-~~~~~~~~~~~~~~v~~~~L~~~L~~ll-~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~--~i~~~l~~lL 198 (939)
|++++.. +...| ..|+.+|.-..-+++..+.+++ +..||.+=..|.-.+|++...- +.+..+++ +.-..+.+++
T Consensus 328 L~WSp~H~se~FW-~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm 405 (429)
T cd00256 328 LHWSPVHKSEKFW-RENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLL 405 (429)
T ss_pred ccCCCCCCCchHH-HHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHh
Confidence 4666666 45666 6899999999999999999988 4668899999999888886421 01111211 1345678899
Q ss_pred CCCCchHHHHHHHHHHHh
Q 002304 199 RDHEDCVRCAAVRVVSEW 216 (939)
Q Consensus 199 ~Ddd~~VR~aAV~aLg~l 216 (939)
+++|++||.+|+.++..+
T Consensus 406 ~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 406 NHEDPNVRYEALLAVQKL 423 (429)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999999875
No 188
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=69.84 E-value=27 Score=45.95 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=24.4
Q ss_pred cchHHHhhccCCCcHHHHHHHHHHHHhcc
Q 002304 302 AAAGTFVHGFEDEFYEVRKSACSSLGSLV 330 (939)
Q Consensus 302 ~a~gaLI~~LeDE~~eVR~aAaeALGkL~ 330 (939)
-+.+.++.+|+|.+.+||..|+.+|-...
T Consensus 208 ~vl~~~i~~L~ds~ddv~~~aa~~l~~~~ 236 (1549)
T KOG0392|consen 208 LVLDFVIEGLEDSDDDVRSVAAQFLVPAP 236 (1549)
T ss_pred HHHHHHHhhhhhcchHHHHHHHHHhhhhh
Confidence 35678899999999999999999985544
No 189
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=68.99 E-value=1.4e+02 Score=42.50 Aligned_cols=247 Identities=17% Similarity=0.213 Sum_probs=148.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccc----cchhh--hhhHHHHHHH-hhCCCCchHHHHHHHHHHHhcchhhh
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVF----EDVDL--IQGCCCRAVE-LLRDHEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~----~~~~l--~~~i~~~l~~-lL~Ddd~~VR~aAV~aLg~lg~~~~~ 222 (939)
...+..++...|+.+|..|+..+..+.....+ -+..+ +...+..+.. ++.|.++.+|.+...-+.. . ..+
T Consensus 483 ~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~--~-~~~ 559 (2341)
T KOG0891|consen 483 QQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNE--R-FDA 559 (2341)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhcc--c-hhh
Confidence 34466789999999999999998888765442 00012 3444444433 4579999999887777761 0 000
Q ss_pred hcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhcc-------------
Q 002304 223 CIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHS------------- 289 (939)
Q Consensus 223 ~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~------------- 289 (939)
+ ..=++-...+-.+++|+.-.+|.+|-..+|++....+.++..-+.+-.+..+..-..-+
T Consensus 560 ------~-laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~ 632 (2341)
T KOG0891|consen 560 ------Q-LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLC 632 (2341)
T ss_pred ------h-hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhh
Confidence 0 00023344466789999999999999999999887777766666554333211100000
Q ss_pred cc--chh-hhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 002304 290 LG--AAE-CFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE----KFAGEALNLLVDMLNDDSV-TVRLQALE 361 (939)
Q Consensus 290 ~l--~~d-~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~----~fA~~ALd~LvdmLnDe~~-~VRl~Aa~ 361 (939)
.+ +.. .+...-....-.++..+.|....|=.+++.++|+|..-.. .++...+..+.+++.|-+. .-|..|..
T Consensus 633 ~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk 712 (2341)
T KOG0891|consen 633 ELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALK 712 (2341)
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHH
Confidence 00 000 0110011222467778889989999999999988774322 1234566777888888754 56677889
Q ss_pred HHhhhhhcccccc-----hhhHHHHHHHhcC-CCCHHHHHHHHHHHhhccC
Q 002304 362 TMHIMVTCEHLNL-----EDKHMHMFLGTLV-DNSELVRCAARKILKLVKT 406 (939)
Q Consensus 362 ALgkI~~~~~i~l-----~E~aL~~LL~~L~-D~~~dVR~aA~~aLg~i~l 406 (939)
++|++.......+ .+..++.+...+. .....+|.++...+|..|.
T Consensus 713 ~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 713 ALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred HhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 9999875221111 1345555555554 3455667666666665544
No 190
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=68.91 E-value=1.3e+02 Score=37.68 Aligned_cols=270 Identities=16% Similarity=0.128 Sum_probs=156.9
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHh-cchhhhhc
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEW-GKMLIACI 224 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~l-g~~~~~~~ 224 (939)
-+.-+..+-+++...++.+..-|+-++|-.. .++..+ +.+.+..+..-++.++..+|..|+-.||.. +. ++
T Consensus 413 vd~gL~qldkylys~~~~ikaGaLLgigi~~-~gv~ne---~dpalALLsdyv~~~~s~~ri~aIlGLglayaG----sq 484 (878)
T KOG2005|consen 413 VDKGLEQLDKYLYSDESYIKAGALLGIGISN-SGVFNE---CDPALALLSDYLQSSSSIHRIGAILGLGLAYAG----SQ 484 (878)
T ss_pred chhhHHHHHHHhhcCCchhhhccceeeeeec-cccccc---cCHHHHHHHHhccCCCceeehHHhhhhHHhhcC----Cc
Confidence 3445667788888889999999998887443 333221 122344556667788999999999998842 22 11
Q ss_pred ccccccccchhHHHHHHHhhcCCC--HHHHHHHHHHHhcc--cCCcHH---HHHHHhhHHHhhhhhh--hhhc-------
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRDMR--MEVRVEAFNALGKV--GMISEI---VLLQTLSKKVLGATKE--KKFH------- 288 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D~s--~~VR~~AA~ALG~i--~~vs~~---~LlqtL~kklm~~lk~--kr~~------- 288 (939)
.+++...|...+.|.+ +.|-..|+-+||.+ |.-.++ -++|++-.+--..++. -|..
T Consensus 485 --------~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~ll 556 (878)
T KOG2005|consen 485 --------REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALL 556 (878)
T ss_pred --------hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHH
Confidence 1445556777776554 45999999999998 432222 2334443331111110 0000
Q ss_pred --ccc-chhh-----------h----h-hhhhc---------ch--HHHhhccCCCc--------HHHHHHHHHHHHhcc
Q 002304 289 --SLG-AAEC-----------F----E-ISASA---------AA--GTFVHGFEDEF--------YEVRKSACSSLGSLV 330 (939)
Q Consensus 289 --~~l-~~d~-----------~----~-l~~s~---------a~--gaLI~~LeDE~--------~eVR~aAaeALGkL~ 330 (939)
++- ..|. + + ++... .+ .-+.|.-.+.+ ..|=--|.-|+|.=.
T Consensus 557 flgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeei 636 (878)
T KOG2005|consen 557 FLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEI 636 (878)
T ss_pred HhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhh
Confidence 000 0000 0 0 00000 01 11222222111 223333444444311
Q ss_pred ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchh
Q 002304 331 ILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLE 410 (939)
Q Consensus 331 ~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~ 410 (939)
. ++-++..+-.++.=..+..|...=-|||-+.... -+-..+++|-....|.+.+|-..+..++|.+|-.+-.
T Consensus 637 --g---~eM~lR~f~h~l~yge~~iRravPLal~llsvSN---Pq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 637 --G---SEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSN---PQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNN 708 (878)
T ss_pred --h---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCC---CcchHHHHHHHhccCcchHHHHHHHHHhccccCCcch
Confidence 1 1335566677788889999999999999887411 1234778999999999999999999999999876654
Q ss_pred HHHHHHHHHHHhhccCc-cchHH-----HHHHHHHhhc
Q 002304 411 FFRLFIDGLLENLKIYP-QDEAD-----VFSVLFFIGR 442 (939)
Q Consensus 411 ~l~~~l~~LL~~L~~~p-eDr~~-----I~~aL~~LG~ 442 (939)
. -+..+|.++..|- .|.+. |..-|-.+|+
T Consensus 709 A---Rla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGK 743 (878)
T KOG2005|consen 709 A---RLAQMLRQLASYYYKDSKALFVVRIAQGLVHLGK 743 (878)
T ss_pred H---HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Confidence 4 5778888887763 55442 4445556665
No 191
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=68.85 E-value=22 Score=33.20 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=46.2
Q ss_pred CCCcHHHHHHHHHHHHhccc----cchhhHHHHHHHHHHHhcCCC--HHHHHHHHHHHhhhhh
Q 002304 312 EDEFYEVRKSACSSLGSLVI----LSEKFAGEALNLLVDMLNDDS--VTVRLQALETMHIMVT 368 (939)
Q Consensus 312 eDE~~eVR~aAaeALGkL~~----~s~~fA~~ALd~LvdmLnDe~--~~VRl~Aa~ALgkI~~ 368 (939)
-|+.|.+|.-|+.-|+.+.. ..+.+-.+.+..+...|.|+. ...+.-|+..|..+|.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 37899999999999988764 345566788899999999774 4678889999999984
No 192
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.80 E-value=25 Score=41.16 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=79.6
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
..++.++..++|....||..|+.+|.++...-...-.+-..++.+....+..|++..||-..+.++-.+.-...+ .
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~----e 133 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACK----E 133 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcch----h
Confidence 345677788999999999999999998876521111112234567778889999999999999988875532211 1
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i 262 (939)
.....+.-.+..+-.+++...+.||.-+.+-|.-+
T Consensus 134 ~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~L 168 (393)
T KOG2149|consen 134 DQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLL 168 (393)
T ss_pred hhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHH
Confidence 13344455667788899999999999998888765
No 193
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=68.61 E-value=25 Score=37.14 Aligned_cols=111 Identities=22% Similarity=0.193 Sum_probs=74.7
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHhhhhccc---------------cc--c---hhhhhhHHHHHHHhhCCC-CchHHHHH
Q 002304 151 TVCLGLTKDPYPYVREAALNGLVCLLKHVV---------------FE--D---VDLIQGCCCRAVELLRDH-EDCVRCAA 209 (939)
Q Consensus 151 ~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~---------------~~--~---~~l~~~i~~~l~~lL~Dd-d~~VR~aA 209 (939)
.++.-.++||++.||.+|+.+|..|-+... +. . ...+-+++..+..+|+.+ +..+=.+.
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 445567889999999999999998865310 00 0 112233556667777655 66666677
Q ss_pred HHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC
Q 002304 210 VRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM 264 (939)
Q Consensus 210 V~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~ 264 (939)
.+.|..+-....-.. =+..++...+..+...+.+.|..||..+.-.+|-+-.
T Consensus 123 lK~la~Lv~~tPY~r---L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 123 LKCLAVLVQATPYHR---LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHccCChhh---cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 777776654311000 0223556778889999999999999999999998743
No 194
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=68.33 E-value=10 Score=45.75 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=98.1
Q ss_pred ccCCchhHHHHHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccc-hhhh
Q 002304 109 VISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFED-VDLI 187 (939)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~-~~l~ 187 (939)
+.|+-.-++.+-+|+.|=.+++....++|-|- -+..+.+++...+.+|+-||--.+.-+.....-+-..++ .-+.
T Consensus 396 ~vn~~~d~l~~~a~~l~LkS~SrSV~~LRTgL----~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~ 471 (743)
T COG5369 396 KVNRKQDDLDFVAIVLFLKSMSRSVTFLRTGL----LDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLE 471 (743)
T ss_pred cCCccchHHHHHHHHHHHHHhhHHHHHHHhhc----cccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHH
Confidence 34444566667778889999999999999865 356678899999999999999888877766543321121 1235
Q ss_pred hhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccc-cchhHHHHHHHhhcCCCHHHHHHHHHHHhcc
Q 002304 188 QGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRID-CSDVVFIQLCSMIRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 188 ~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~-lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i 262 (939)
.++...+++++...|+..|...+-+|. ..+-. .+++.+.. +..-.+.++....+|++|.|..+..+.|.++
T Consensus 472 ~~iIdvl~~~v~sKDdaLqans~wvlr---Hlmyn-cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNf 543 (743)
T COG5369 472 KSIIDVLVNLVMSKDDALQANSEWVLR---HLMYN-CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNF 543 (743)
T ss_pred hhHHHHHHHHhhcchhhhhhcchhhhh---hhhhc-CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhc
Confidence 567888889887777766633333332 11100 01111222 2223467888999999999999999999888
No 195
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=67.77 E-value=2.5e+02 Score=32.81 Aligned_cols=311 Identities=14% Similarity=0.069 Sum_probs=161.9
Q ss_pred HHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccc-----hhhhhhHHHHHHHhhCCCCchH
Q 002304 131 VRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFED-----VDLIQGCCCRAVELLRDHEDCV 205 (939)
Q Consensus 131 ~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~-----~~l~~~i~~~l~~lL~Ddd~~V 205 (939)
.|++=.+.+.. + ...++..+..-+.+||..|..-|....+.+.+.-.-.+ ..+..++|+.++.-+-.+|++|
T Consensus 68 ERLfkakegah--l-apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeV 144 (524)
T KOG4413|consen 68 ERLFKAKEGAH--L-APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEV 144 (524)
T ss_pred HHHHhhccchh--h-chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHH
Confidence 66666655442 1 23566777777888999999999999998876422011 1124568999999999999999
Q ss_pred HHHHHHHHHHhcchh---hhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhh
Q 002304 206 RCAAVRVVSEWGKML---IACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGAT 282 (939)
Q Consensus 206 R~aAV~aLg~lg~~~---~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~l 282 (939)
-.+|++.+..++..- ...-+ ..+.|| .++.+..---+.-+|+..-+.+-++-.+|++.+-..-.
T Consensus 145 AkAAiesikrialfpaaleaiFe----SellDd--lhlrnlaakcndiaRvRVleLIieifSiSpesaneckk------- 211 (524)
T KOG4413|consen 145 AKAAIESIKRIALFPAALEAIFE----SELLDD--LHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKK------- 211 (524)
T ss_pred HHHHHHHHHHHHhcHHHHHHhcc----cccCCh--HHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhh-------
Confidence 999999999877531 00000 000010 01222222234457777778887877777665433322
Q ss_pred hhhhhccccchhhhhhhhhcchHHHhhccCC-CcHHHHHHHHHHHHhccc--cchhh-HHH-HHHHHHHHh--cCCCHHH
Q 002304 283 KEKKFHSLGAAECFEISASAAAGTFVHGFED-EFYEVRKSACSSLGSLVI--LSEKF-AGE-ALNLLVDML--NDDSVTV 355 (939)
Q Consensus 283 k~kr~~~~l~~d~~~l~~s~a~gaLI~~LeD-E~~eVR~aAaeALGkL~~--~s~~f-A~~-ALd~LvdmL--nDe~~~V 355 (939)
+|.+.-+..-|.- ++--||...++-...+.- .+.+| +++ .++.+-... .|.++.-
T Consensus 212 ------------------SGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 212 ------------------SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred ------------------hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 2222223322221 334566655555444431 01111 111 223332222 2344444
Q ss_pred HHHHHHHHhhhhhcc-cccchh--------hHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccC
Q 002304 356 RLQALETMHIMVTCE-HLNLED--------KHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIY 426 (939)
Q Consensus 356 Rl~Aa~ALgkI~~~~-~i~l~E--------~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~ 426 (939)
...|+-..|++=... -..+.+ -+++..+++.+-.+++...+|..++|.+|-+. ++-+. +++ .-
T Consensus 274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt-eGadl----llk---Tg 345 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT-EGADL----LLK---TG 345 (524)
T ss_pred HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc-chhHH----Hhc---cC
Confidence 444443333332100 001111 23455567788889999999999999998643 44222 222 11
Q ss_pred ccchHHHHHHHHHhhcccccch-HHHHHHHhhh-cCCCCCCCCCCCchhHHHHHHHHhhccc
Q 002304 427 PQDEADVFSVLFFIGRSHGNFA-ACIIKEVCQE-IEPDSDDKLGFDNARVAAFLVLAISVPL 486 (939)
Q Consensus 427 peDr~~I~~aL~~LG~~H~~lv-~~lv~~Ll~~-i~p~~~~e~~~dd~~yiA~Lili~~A~~ 486 (939)
| -...+.+..+|.++.+.- +.-+..|-.. -+.+..+|-..|-..-...=.++++|+.
T Consensus 346 p---paaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaa 404 (524)
T KOG4413|consen 346 P---PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAA 404 (524)
T ss_pred C---hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHh
Confidence 1 123455566654433332 2223333221 1334445555555555555566777665
No 196
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=67.47 E-value=44 Score=36.99 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=40.4
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCC
Q 002304 397 ARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSD 464 (939)
Q Consensus 397 A~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~ 464 (939)
+..++..++..+.+. +..++.+=+-|.-.|..++++|..+...||.-.+.++..+.+...-+..
T Consensus 101 l~~ilasv~~G~~~~----L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~ 164 (249)
T PF06685_consen 101 LPRILASVGDGDIEP----LKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLE 164 (249)
T ss_pred HHHHHHHHhCCCHHH----HHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 344444444444333 4555553333334488999999999988888888888877666544444
No 197
>COG4335 DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=66.92 E-value=29 Score=35.70 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred CCCcHHHHHHHHHHHHhccccchhh---------HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHH
Q 002304 312 EDEFYEVRKSACSSLGSLVILSEKF---------AGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMF 382 (939)
Q Consensus 312 eDE~~eVR~aAaeALGkL~~~s~~f---------A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~L 382 (939)
.|..|+|-..|..++.+.+. .+| +.+.+..+.+--.++++.||.-+-+...-= + ..-..|
T Consensus 5 gl~hfe~s~~al~~~t~rgt--se~~~rpll~~~~eat~a~l~~wSe~~ne~vrrLssec~r~r-------l--Pws~~L 73 (167)
T COG4335 5 GLSHFEVSVNALPEFTMRGT--SEFASRPLLPKDAEATFAPLLRWSEHQNEHVRRLSSECTRPR-------L--PWSKLL 73 (167)
T ss_pred chhHHHHHHHHhHHHHHHhh--HHHHHhccCCCCHHHHHHHHhhhccCccHHHHHHHhcccCCC-------C--chHHHH
Confidence 46678888888888877773 344 356788899999999999998766554321 1 133445
Q ss_pred HHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhhh
Q 002304 383 LGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQE 458 (939)
Q Consensus 383 L~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~ 458 (939)
...++|+++.-- .+..+-..-+. -.|+++..-+.+|-+-||.|.-.+++.+.++
T Consensus 74 ~~~~~~~~~~~~--------------------il~al~adK~l--yvrksvan~lndi~k~hp~f~~~~~~aw~kt 127 (167)
T COG4335 74 LKLQKDPSPVNM--------------------ILTALKADKEL--YVRKSVANNLNDIKKVHPSFDVSAFDAWAKT 127 (167)
T ss_pred HHHhhcCcchhH--------------------HHHhhHhHHHH--HHHHHHHHHHHHhhhcChHHHHHHHHhhccc
Confidence 555555554321 11111110001 1277777777788888888887777777765
No 198
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.77 E-value=12 Score=42.49 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=60.5
Q ss_pred HHhhccCCCcHHHHHHHHHHHHhcccc-chhh---HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHH--
Q 002304 306 TFVHGFEDEFYEVRKSACSSLGSLVIL-SEKF---AGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHM-- 379 (939)
Q Consensus 306 aLI~~LeDE~~eVR~aAaeALGkL~~~-s~~f---A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL-- 379 (939)
.++..|.|..+.||++|++.|-.+... ...+ ..+.+..|..+++|..+ -..|+.||++++... .+++..+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~~ 82 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQD 82 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHHH
Confidence 467788899999999999999555442 1111 25678899999999999 667899999998522 2233333
Q ss_pred --HHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 380 --HMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 380 --~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
..+...+.|+-...-+.+..+|..
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~N 108 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSN 108 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHH
Confidence 334444555544444444444433
No 199
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.63 E-value=75 Score=32.60 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=28.7
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCc-HHHH
Q 002304 234 DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMIS-EIVL 270 (939)
Q Consensus 234 ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs-~~~L 270 (939)
+.....+-+.++++++.-|+.++..++-.-..+ .+.+
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l 61 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEIL 61 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHH
Confidence 455667889999999999999999998875443 4443
No 200
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=63.24 E-value=97 Score=37.43 Aligned_cols=220 Identities=17% Similarity=0.095 Sum_probs=128.0
Q ss_pred hcCCCCChhhHHHHHHHHhhhcCCCCCCchhhHHHHHHhh----cccccCCCCcchhhhhhh----hccccccccchhhH
Q 002304 31 INNPNTSNSTLSSLLETLTRSLQLTDSDSLTRHHELTLLA----GLSLRHPHFSPLISNSLR----SNSLLFSSYSPRLA 102 (939)
Q Consensus 31 ~~~~~t~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~ 102 (939)
++-.+.+++.|+..=|.+-..++.+-++..+-.+..+|+. +....++..+|.+=--|. +-..++.. .|.-.
T Consensus 243 liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~-~~~~~ 321 (501)
T PF13001_consen 243 LIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATS-FPNIL 321 (501)
T ss_pred eeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhC-CccHH
Confidence 5556778899999888888888877677776778888888 777888877776644444 22222221 12333
Q ss_pred HHHhhhccCC---c---hhHHHHH---HHhhcCCchH----HHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHH
Q 002304 103 AAAALAVISD---H---TVDDRFF---VSLCFASSVS----VRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAAL 169 (939)
Q Consensus 103 ~~~~~~~~~~---~---~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl 169 (939)
.++..+-..+ . .+--++. .|.++..+.. .|-+++..+-+.--. .-..-....+...|..|-
T Consensus 322 ~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~------~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 322 QIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQD------SSSQSNSSEDIELRSLAY 395 (501)
T ss_pred HHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccccc------ccccCCCcccHHHHHHHH
Confidence 3444441111 1 1223334 4444444442 222333222211000 000012346789999999
Q ss_pred HHHHhhhhcccc-cchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc-cccccccchhHHHH-HHHhhcC
Q 002304 170 NGLVCLLKHVVF-EDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACID-EKNRIDCSDVVFIQ-LCSMIRD 246 (939)
Q Consensus 170 ~AL~~L~~~~~~-~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~-~~~~i~lvddaf~a-Lc~aL~D 246 (939)
++||.+..+.-. .... -++...+...|.++.++||...-++|+.|...+....+ ...+. ...... +-....+
T Consensus 396 e~lG~L~~~~p~l~~~d--~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~---~~~~~~l~~~~~~~ 470 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFSKD--LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQK---RLLLELLLLSYIQS 470 (501)
T ss_pred HHHHHHHccCccccccc--HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHH---HHHHHHHHHhhccc
Confidence 999999875421 1011 23567778888999999999999999999887644322 00000 111222 2234467
Q ss_pred CCHHHHHHHHHHHhcc
Q 002304 247 MRMEVRVEAFNALGKV 262 (939)
Q Consensus 247 ~s~~VR~~AA~ALG~i 262 (939)
....+|..|.+-....
T Consensus 471 ~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 471 EVRSCRYAAVKYANAC 486 (501)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888999998876664
No 201
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=62.16 E-value=19 Score=47.37 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=78.5
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
....+..+...+++.||.+|+++.+.+.+.+.. ..-..++..+.-++.|-+..||++++..+-..-..... ..
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~---e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~----~~ 889 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATR---ETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLM----VG 889 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhc----cc
Confidence 445667789999999999999999999876531 12234677888899999999999887755543322100 01
Q ss_pred ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC
Q 002304 229 RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM 264 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~ 264 (939)
-.++..-.+..|-.++.|..-.||.+|.+.+..+..
T Consensus 890 l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 890 LVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred ccccceeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 122333345678899999999999999999998743
No 202
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=62.05 E-value=3e+02 Score=31.89 Aligned_cols=255 Identities=10% Similarity=0.017 Sum_probs=117.9
Q ss_pred hcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCc
Q 002304 124 CFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHED 203 (939)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~ 203 (939)
.++.|-..|-|+-+... .-+...+...+..+...+....++.+.++.... ++..
T Consensus 65 ~~~~p~~~~~~~~~r~~--~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~------------------------~~~~ 118 (409)
T TIGR00540 65 FFRLGAHSRGWFSGRKR--RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHA------------------------AEPV 118 (409)
T ss_pred HHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC------------------------CCCH
Confidence 45666667777766422 134456777777777777766666665443211 1112
Q ss_pred hHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhh
Q 002304 204 CVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATK 283 (939)
Q Consensus 204 ~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk 283 (939)
.....++++....|+.- ..+..+........|....||...|+.+-..++.. ..
T Consensus 119 ~~~llaA~aa~~~g~~~-----------~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~-~A-------------- 172 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEA-----------RANQHLEEAAELAGNDNILVEIARTRILLAQNELH-AA-------------- 172 (409)
T ss_pred HHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH-HH--------------
Confidence 22334455554444321 01222223223344555567777777766665421 11
Q ss_pred hhhhccccchhhhhhhhhcchHHHhh--ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHH-hcCCCHHHHHHHH
Q 002304 284 EKKFHSLGAAECFEISASAAAGTFVH--GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDM-LNDDSVTVRLQAL 360 (939)
Q Consensus 284 ~kr~~~~l~~d~~~l~~s~a~gaLI~--~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lvdm-LnDe~~~VRl~Aa 360 (939)
...|-. ...-++.+|........-+.++. +=+.+.++.+.+. ..++.........
T Consensus 173 --------------------l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~--~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (409)
T TIGR00540 173 --------------------RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW--QALDDIIDNMAKAGLFDDEEFADLEQK 230 (409)
T ss_pred --------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 001111 11233446666666666555542 1122334444443 1222222222222
Q ss_pred HHHhhhhhcccccchhhHHHHHHHhcCC---CCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHH---HH
Q 002304 361 ETMHIMVTCEHLNLEDKHMHMFLGTLVD---NSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEAD---VF 434 (939)
Q Consensus 361 ~ALgkI~~~~~i~l~E~aL~~LL~~L~D---~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~---I~ 434 (939)
...+.+..... .-..+.+......+.+ .++.++-+...++-..+. .+.+.+.+...+++.|++... .+
T Consensus 231 a~~~~l~~~~~-~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~-----~~~A~~~l~~~l~~~pd~~~~~~~~l 304 (409)
T TIGR00540 231 AEIGLLDEAMA-DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD-----HDSAQEIIFDGLKKLGDDRAISLPLC 304 (409)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC-----hHHHHHHHHHHHhhCCCcccchhHHH
Confidence 22222211000 0001244444444443 267777666666666554 344677777888888877542 22
Q ss_pred HHHHHhhcccccchHHHHHHHhhh
Q 002304 435 SVLFFIGRSHGNFAACIIKEVCQE 458 (939)
Q Consensus 435 ~aL~~LG~~H~~lv~~lv~~Ll~~ 458 (939)
.....+...+++-....+..+++.
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHh
Confidence 333333333333334444444544
No 203
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=61.74 E-value=8.4 Score=31.02 Aligned_cols=22 Identities=32% Similarity=0.234 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH
Q 002304 378 HMHMFLGTLVDNSELVRCAARK 399 (939)
Q Consensus 378 aL~~LL~~L~D~~~dVR~aA~~ 399 (939)
....+...|.|+++.||+++..
T Consensus 19 v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 19 VQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHhcCCChHHHHHHHH
Confidence 3344444455555555544443
No 204
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.11 E-value=2.2e+02 Score=36.84 Aligned_cols=187 Identities=16% Similarity=0.058 Sum_probs=115.1
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcc--cccchhhhhhHHHHHHHhhCCC-CchHHHHHHHHHHHhcchhhhhc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHV--VFEDVDLIQGCCCRAVELLRDH-EDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~--~~~~~~l~~~i~~~l~~lL~Dd-d~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
.+-++|..+....||.---.|+..|.++--=+ ..++.-.++.+.|.++.+|+++ +.+.=+.|+++|..+-+.+..+-
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 44455666666669998888888888764211 0022233556789999999876 78999999999999887654431
Q ss_pred ccccccccc-hhHHHHHHHhh-cCCCHHHHHHHHHHHhcccCC-cHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhh
Q 002304 225 DEKNRIDCS-DVVFIQLCSMI-RDMRMEVRVEAFNALGKVGMI-SEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISAS 301 (939)
Q Consensus 225 ~~~~~i~lv-ddaf~aLc~aL-~D~s~~VR~~AA~ALG~i~~v-s~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s 301 (939)
. -.| .+++..++..| .=...+|-.++-.||-+|... +...| | .
T Consensus 248 a-----~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL-~----------------------------A 293 (1051)
T KOG0168|consen 248 A-----IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAIL-Q----------------------------A 293 (1051)
T ss_pred h-----eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHH-h----------------------------c
Confidence 1 111 24666666644 566677888888887777432 32222 1 1
Q ss_pred cchHH---HhhccCCCcHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 302 AAAGT---FVHGFEDEFYEVRKSACSSLGS-LVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 302 ~a~ga---LI~~LeDE~~eVR~aAaeALGk-L~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
+++-+ |+.-+.---..|=.+.|...|+ +......|..+++|.|..+|...+..+=..+.-++.+|+.
T Consensus 294 G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 294 GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 22222 2221211111222233333344 4444555678899999999999998888888888888874
No 205
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=59.81 E-value=34 Score=40.15 Aligned_cols=85 Identities=14% Similarity=0.239 Sum_probs=56.0
Q ss_pred HHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 326 LGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 326 LGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
+++.=.--|++|..|+|.=.|+..|++..||.+||+.|-.+...+.+ ....+.+..+|+ ...+..+++.+.
T Consensus 48 ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~---~rv~d~l~qLLn------k~sl~~Lf~~~~ 118 (460)
T KOG2213|consen 48 IPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDAL---SRVNDVLVQLLN------KASLTGLFGQIE 118 (460)
T ss_pred HHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchh---hhhHHHHHHHHH------HHHHHHHHhhhh
Confidence 33333346777889999999999999999999999999998853211 234555555555 334555666666
Q ss_pred CCchhHHHHHHHHH
Q 002304 406 TPKLEFFRLFIDGL 419 (939)
Q Consensus 406 l~~~~~l~~~l~~L 419 (939)
..+.+..+.++.-+
T Consensus 119 ~~D~~irek~l~fi 132 (460)
T KOG2213|consen 119 VGDEQIREKVLKFI 132 (460)
T ss_pred hhhHHHHHHHHHHH
Confidence 55444444444333
No 206
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=59.23 E-value=28 Score=35.66 Aligned_cols=73 Identities=18% Similarity=0.076 Sum_probs=54.3
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHH
Q 002304 192 CRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLL 271 (939)
Q Consensus 192 ~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~Ll 271 (939)
+.+....+|+++-+|+.|+-.+..+... -.-.+..+.-+...+.|++..||++.+++|.+++..-++...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVI 177 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 4677788999999999999888775541 011355666677778899999999999999999765444444
Q ss_pred HHh
Q 002304 272 QTL 274 (939)
Q Consensus 272 qtL 274 (939)
..+
T Consensus 178 ~~l 180 (197)
T cd06561 178 AFL 180 (197)
T ss_pred HHH
Confidence 443
No 207
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=54.53 E-value=1.3e+02 Score=39.53 Aligned_cols=58 Identities=5% Similarity=-0.028 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhhccc---ccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhccccCcC
Q 002304 430 EADVFSVLFFIGRSH---GNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQ 490 (939)
Q Consensus 430 r~~I~~aL~~LG~~H---~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~s~~~ 490 (939)
+..+-.++..+..+| |+.|.+.+=.|++-=+. .+-...|..|+|.||..+..+..+..
T Consensus 746 q~~iP~a~a~lR~~~g~cp~~V~~FlLdLlkyNDN---s~N~YSD~~y~a~LIesl~~~l~p~~ 806 (1180)
T KOG1932|consen 746 QCAIPVAFASLRGREGKCPKEVKAFLLDLLKYNDN---SFNSYSDDYYRASLIESLVESLFPMV 806 (1180)
T ss_pred HHhhHHHHHHhccccCCChHHHHHHHHHHhhcccC---CCCccchHHHHHHHHHHHhhhccccc
Confidence 445677788886666 34444444444443233 44488999999999999988886654
No 208
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=53.84 E-value=91 Score=35.28 Aligned_cols=84 Identities=21% Similarity=0.124 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHH
Q 002304 318 VRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD-SVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCA 396 (939)
Q Consensus 318 VR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe-~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~a 396 (939)
=|...+..|..+.. . ..+.+++..|...+..| ++.+...++.+|+.-.......+.++.++.+..-|+|..+-||+.
T Consensus 3 ~r~~~~~~L~~l~~-~-~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~ 80 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-S-SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRA 80 (339)
T ss_pred HHHHHHHHHHhCCC-c-chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHH
Confidence 36677777777765 2 26678888888877765 888999999999987643345678899999999999999999987
Q ss_pred HHHHHhh
Q 002304 397 ARKILKL 403 (939)
Q Consensus 397 A~~aLg~ 403 (939)
-...+|.
T Consensus 81 w~~~~~~ 87 (339)
T PF12074_consen 81 WLLCLGE 87 (339)
T ss_pred HHHHHHH
Confidence 7665555
No 209
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=52.24 E-value=70 Score=32.77 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=45.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCch
Q 002304 342 NLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKL 409 (939)
Q Consensus 342 d~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~ 409 (939)
+.+..-..|++..+|+.|+..+...... ..-.+..++.+...+.|+...||++++.+|..++....
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~--~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK--ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 5677778888888888888777765532 12235567777777777888888888777777665433
No 210
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.26 E-value=25 Score=34.86 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=40.9
Q ss_pred chHHHhhcc-CCCcHHHHHHHHHHHHhccccchh---hH--HHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 303 AAGTFVHGF-EDEFYEVRKSACSSLGSLVILSEK---FA--GEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 303 a~gaLI~~L-eDE~~eVR~aAaeALGkL~~~s~~---fA--~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
++-.|+..| ...+..+-.-|+.-||++....|. +. -.+-+.++.+++++++.||.+|+.|+.++-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 455677777 333666666777777776643333 11 124466778888888888888888887763
No 211
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.73 E-value=6.8e+02 Score=32.46 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=60.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcH
Q 002304 238 IQLCSMIRDMRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFY 316 (939)
Q Consensus 238 ~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~ 316 (939)
.-|...+.-.+..||+.|.+.|..+ ..-+.+. .+++ + ..+..+.-++..|.|.--
T Consensus 125 ~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~-q~~l----l-------------------~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 125 TLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL-QDAL----L-------------------VSPMGISKLMDLLRDSRE 180 (970)
T ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH-HHHH----H-------------------HCchhHHHHHHHHhhhhh
Confidence 3577889999999999999999887 3333222 1111 1 134556678888888888
Q ss_pred HHHHHHHHHHHhccccchhh----H-HHHHHHHHHHhcCC
Q 002304 317 EVRKSACSSLGSLVILSEKF----A-GEALNLLVDMLNDD 351 (939)
Q Consensus 317 eVR~aAaeALGkL~~~s~~f----A-~~ALd~LvdmLnDe 351 (939)
-||-+|+-=|+.+...++.+ | +.|++.|.+.+..|
T Consensus 181 ~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888887665553 1 44555566655544
No 212
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.48 E-value=60 Score=42.44 Aligned_cols=120 Identities=23% Similarity=0.138 Sum_probs=82.3
Q ss_pred HHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccc--hhhhhhHHHHHHHhh-CCCCchHHH
Q 002304 131 VRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFED--VDLIQGCCCRAVELL-RDHEDCVRC 207 (939)
Q Consensus 131 ~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~--~~l~~~i~~~l~~lL-~Ddd~~VR~ 207 (939)
...|+..--+-|. ....+.-+.=.+.|-...||...+.+|..+.......+ ..+++-.-.+.+++. +|.+.+||.
T Consensus 311 LgiWi~~yP~~Fl--~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vra 388 (1048)
T KOG2011|consen 311 LGIWIKSYPEIFL--SDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRA 388 (1048)
T ss_pred HHHHHHhccHHHh--cchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 4457665543221 22334444446889999999999999999977533211 122333444556666 899999999
Q ss_pred HHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc
Q 002304 208 AAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 208 aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i 262 (939)
.++..+-.... ..-+.++-+..+-..+-|.+.+||++|..-|-.-
T Consensus 389 v~L~~~~~~~~----------~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 389 VGLVLCLLLSS----------SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHHHhc----------ccccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 98888876643 1234466678889999999999999999888653
No 213
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=48.44 E-value=3.1e+02 Score=27.83 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=61.4
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-ccc-c---cchhhHHHHHHH
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEH-L---NLEDKHMHMFLG 384 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~-i---~l~E~aL~~LL~ 384 (939)
.+..++|.+=..-++.+..-. .-+..|+..|...++..++.|-+.|+.-|.-+.. +|. + ...++-++.|..
T Consensus 12 ~l~~~dw~~il~icD~I~~~~----~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k 87 (144)
T cd03568 12 KLTSENWGLILDVCDKVKSDE----NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK 87 (144)
T ss_pred cCCCcCHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 355678877777777775532 2357899999999999999999999988877753 231 0 123466777777
Q ss_pred hcCC-CCHHHHHHHHHHH
Q 002304 385 TLVD-NSELVRCAARKIL 401 (939)
Q Consensus 385 ~L~D-~~~dVR~aA~~aL 401 (939)
++.+ .++.||..+..++
T Consensus 88 l~~~~~~~~Vk~kil~li 105 (144)
T cd03568 88 LINDRVHPTVKEKLREVV 105 (144)
T ss_pred HhcccCCHHHHHHHHHHH
Confidence 7777 7777776665533
No 214
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=48.37 E-value=77 Score=31.31 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=59.1
Q ss_pred CCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc-ccccchhhh-hhHHHHHHHhhCC---CCchHHHHHHHHHHHhc
Q 002304 143 NVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH-VVFEDVDLI-QGCCCRAVELLRD---HEDCVRCAAVRVVSEWG 217 (939)
Q Consensus 143 ~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~-~~~~~~~l~-~~i~~~l~~lL~D---dd~~VR~aAV~aLg~lg 217 (939)
..++.+.+..|.+.+++++|.|..-|+.-|..+..- |......+. .+.+..+..++.+ .++.||..+++.+..|+
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 367788899999999999999999999998877653 221111222 2455567778865 48899999999999999
Q ss_pred chh
Q 002304 218 KML 220 (939)
Q Consensus 218 ~~~ 220 (939)
..+
T Consensus 112 ~~f 114 (133)
T cd03561 112 ESF 114 (133)
T ss_pred HHh
Confidence 755
No 215
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=45.63 E-value=1.5e+02 Score=34.59 Aligned_cols=129 Identities=16% Similarity=0.077 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhC----C--CCchHHHHHHHHHHHhcchhhh--h--ccccccccc
Q 002304 163 YVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLR----D--HEDCVRCAAVRVVSEWGKMLIA--C--IDEKNRIDC 232 (939)
Q Consensus 163 ~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~----D--dd~~VR~aAV~aLg~lg~~~~~--~--~~~~~~i~l 232 (939)
..|+||.+=|..+..... ..+.+-+...+.+.|+ | .++.-+-.|+.+++.++..... . .+.+..++.
T Consensus 226 TrR~AA~dfl~~L~~~~~---~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFE---KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp SHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred CcHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 345566666666654321 0111112223333333 3 4556666799999988754211 0 111111111
Q ss_pred chhHH-----HHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHH
Q 002304 233 SDVVF-----IQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGT 306 (939)
Q Consensus 233 vddaf-----~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ga 306 (939)
.+-| ..|. .-.+..+-+|..|.+-+..+++ .+.+.+. .+.+.
T Consensus 303 -~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~------------------------------~~~~~ 350 (370)
T PF08506_consen 303 -VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL------------------------------QIFPL 350 (370)
T ss_dssp -HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH------------------------------HHHHH
T ss_pred -HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH------------------------------HHHHH
Confidence 2222 2233 2236788899999999999966 4554432 35678
Q ss_pred HhhccCCCcHHHHHHHHHHH
Q 002304 307 FVHGFEDEFYEVRKSACSSL 326 (939)
Q Consensus 307 LI~~LeDE~~eVR~aAaeAL 326 (939)
+++.|.++..-|+.-||.++
T Consensus 351 l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 351 LVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhCCCCcchhhhhhhhC
Confidence 99999999999999999875
No 216
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=45.20 E-value=1.8e+02 Score=31.69 Aligned_cols=139 Identities=15% Similarity=0.127 Sum_probs=78.9
Q ss_pred ccCCCcHHHHHHHHHHHHhccc-------cchhh------HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccch-
Q 002304 310 GFEDEFYEVRKSACSSLGSLVI-------LSEKF------AGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLE- 375 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~-------~s~~f------A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~- 375 (939)
+|+|++..|-+.++.+.+.+=. .++.. ....-+.++.++.++++.||..|++-+..+--...-...
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999988866431 11111 123447789999999999999999999877420000000
Q ss_pred -----hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccc---hHHHHHHHHHhhcccccc
Q 002304 376 -----DKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD---EADVFSVLFFIGRSHGNF 447 (939)
Q Consensus 376 -----E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peD---r~~I~~aL~~LG~~H~~l 447 (939)
...-+.=+..+-...|-+....-+ . .-+.+++.|+..+....-+ --.+..+|..|.++-|.+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le---~-------Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~ 150 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLE---A-------EANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQF 150 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHH---H-------HHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHH---H-------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHH
Confidence 000111122333344444432211 1 1123566666665554423 335677788888888999
Q ss_pred hHHHHHHHhhh
Q 002304 448 AACIIKEVCQE 458 (939)
Q Consensus 448 v~~lv~~Ll~~ 458 (939)
...+++.|+..
T Consensus 151 ~~~Il~~ll~~ 161 (239)
T PF11935_consen 151 MSRILPALLSF 161 (239)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999887
No 217
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=45.20 E-value=2.2e+02 Score=35.96 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=57.1
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
+...|-|.|.=.++.+|++.=-+||-+...+|.+ ..+|.|-...+|.+.+|-.+||-|+|-+|+
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq~--~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV--NVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc--hHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 4556778887778899999999999999888874 689999999999999999999999999996
No 218
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=44.64 E-value=3.8e+02 Score=30.09 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhcccC-Cc--HHH-HHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhcc
Q 002304 236 VFIQLCSMIRDMRMEVRVEAFNALGKVGM-IS--EIV-LLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGF 311 (939)
Q Consensus 236 af~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs--~~~-LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~L 311 (939)
.+.++.+.++-+|+.+...|+..|+.+-. -+ ... ..+.+ +.+++.++ ..+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l-~~ll~~L~-------------------------~~l 159 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL-PKLLQWLS-------------------------SQL 159 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH-HHHHHHHH--------------------------TT
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH-HHHHHHHH-------------------------Hhh
Confidence 56777778888899999999999988822 11 111 00011 11111111 112
Q ss_pred CCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHh-----cCC--CHHHHHHHHHHHhhhh
Q 002304 312 EDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDML-----NDD--SVTVRLQALETMHIMV 367 (939)
Q Consensus 312 eDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmL-----nDe--~~~VRl~Aa~ALgkI~ 367 (939)
..++.++...|+..|+.+.. .+++. ...++.|.+.+ ++. ..++--+++-+++-++
T Consensus 160 ~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 160 SSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp -HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred cCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence 22444555666666666553 23321 45678888888 333 4566667888888877
No 219
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.42 E-value=2.2e+02 Score=27.64 Aligned_cols=34 Identities=32% Similarity=0.334 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 335 KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 335 ~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
.|..=+++.|+.-+.|++..|+..|++.|-+...
T Consensus 4 ~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 4 DFEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 4555678889999999999999999999988764
No 220
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.31 E-value=4.3e+02 Score=29.94 Aligned_cols=146 Identities=21% Similarity=0.207 Sum_probs=93.6
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHH--HHHhhhhhcccccchhhHHHHHHHhcC
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQAL--ETMHIMVTCEHLNLEDKHMHMFLGTLV 387 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa--~ALgkI~~~~~i~l~E~aL~~LL~~L~ 387 (939)
+++|+.|.|=...+-|.-.-+ .-.+|+.++..|-+-|--..-.+|++|. +|.|. -+++++..-..|+
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~--~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~---------~~~A~e~y~~lL~ 114 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTG--RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN---------YKEAIEYYESLLE 114 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc---------hhhHHHHHHHHhc
Confidence 599999998877666553333 3456889999999999777778888875 34443 2468888888888
Q ss_pred CCCH--HHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccch--HHHHHHHhhhcCCCC
Q 002304 388 DNSE--LVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFA--ACIIKEVCQEIEPDS 463 (939)
Q Consensus 388 D~~~--dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv--~~lv~~Ll~~i~p~~ 463 (939)
|+-- -+|+.=..+++..|-+. .+++.|.+-|+.|+-|. .+|+=|..|=-+-..|- ..+..+++=+ .|
T Consensus 115 ddpt~~v~~KRKlAilka~GK~l-----~aIk~ln~YL~~F~~D~-EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P-- 185 (289)
T KOG3060|consen 115 DDPTDTVIRKRKLAILKAQGKNL-----EAIKELNEYLDKFMNDQ-EAWHELAEIYLSEGDFEKAAFCLEELLLI-QP-- 185 (289)
T ss_pred cCcchhHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHhcCcH-HHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CC--
Confidence 7632 23433333445544332 36888888899999884 46887777732211232 2356666664 55
Q ss_pred CCCCCCCchhHHHHHHHH
Q 002304 464 DDKLGFDNARVAAFLVLA 481 (939)
Q Consensus 464 ~~e~~~dd~~yiA~Lili 481 (939)
-.|.|-.++-.+
T Consensus 186 ------~n~l~f~rlae~ 197 (289)
T KOG3060|consen 186 ------FNPLYFQRLAEV 197 (289)
T ss_pred ------CcHHHHHHHHHH
Confidence 245666665433
No 221
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=41.80 E-value=1.3e+02 Score=28.67 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 321 SACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 321 aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
..+..++.+....++-+..++..|...+++.+|.|.++|+..|-.+..
T Consensus 19 ~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvk 66 (115)
T cd00197 19 PLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVK 66 (115)
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 444555555544445567899999999999999999999988887764
No 222
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=41.55 E-value=47 Score=33.61 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=38.2
Q ss_pred ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCC
Q 002304 145 RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRD 200 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~D 200 (939)
+.+++.+.+..++.++|+.|.+.|+++|....++... ..-..+.+++.|
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~-------pY~d~L~~Lldd 62 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLT-------PYKDNLENLLDD 62 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH-------hHHHHHHHHcCc
Confidence 5678899999999999999999999999988876541 112455666665
No 223
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=40.59 E-value=31 Score=40.70 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=65.7
Q ss_pred hhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCC-CHHHHHHHHHHHHhhhhcccccchhhhh--hHHHHHHHhhC
Q 002304 123 LCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDP-YPYVREAALNGLVCLLKHVVFEDVDLIQ--GCCCRAVELLR 199 (939)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~-Dp~VRraAl~AL~~L~~~~~~~~~~l~~--~i~~~l~~lL~ 199 (939)
||..+..-.--+-..||.+|+-..-+++..+.++++-- ||.+=..|.-.+|+....- +.+..+++ +--..+.++++
T Consensus 341 L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y-P~gk~vv~k~ggKe~vM~Lln 419 (442)
T KOG2759|consen 341 LEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY-PEGKAVVEKYGGKERVMNLLN 419 (442)
T ss_pred cCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC-chHhHHHHHhchHHHHHHHhc
Confidence 45555553333447899999999999999999887654 5999999999888875421 01111111 12356788999
Q ss_pred CCCchHHHHHHHHHHHh
Q 002304 200 DHEDCVRCAAVRVVSEW 216 (939)
Q Consensus 200 Ddd~~VR~aAV~aLg~l 216 (939)
.+|+.||..|+.++-.+
T Consensus 420 h~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 420 HEDPEVRYHALLAVQKL 436 (442)
T ss_pred CCCchHHHHHHHHHHHH
Confidence 99999999999887654
No 224
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=38.75 E-value=2.2e+02 Score=27.40 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhc
Q 002304 337 AGEALNLLVDMLN-DDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTL 386 (939)
Q Consensus 337 A~~ALd~LvdmLn-De~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L 386 (939)
....+|++.+.+. ....+.|..+---++.++ .+..+.++.++.+++.+
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La--~k~~L~~~~l~~l~~~i 52 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLA--SKVPLSDEVLNALMESI 52 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH--hhcCCcHHHHHHHHHHH
Confidence 4567899999998 888899999999999998 45667777777766543
No 225
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=38.43 E-value=3e+02 Score=27.12 Aligned_cols=88 Identities=15% Similarity=0.254 Sum_probs=57.0
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-ccc-c--cc-hhhHHHHHHH
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEH-L--NL-EDKHMHMFLG 384 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~-i--~l-~E~aL~~LL~ 384 (939)
.+.+++|..=.+-++.+..- +.-+..|+..|...++..++.|.+.|+..|--+.. +|. + .+ ..+.+..+..
T Consensus 12 ~~~~~D~~~il~icd~I~~~----~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 12 SLEEPDWALNLELCDLINLK----PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred ccCCccHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 35678887666666666443 33357899999999999999999999988887763 221 1 01 1244555666
Q ss_pred hcCC---CCHHHHHHHHHHH
Q 002304 385 TLVD---NSELVRCAARKIL 401 (939)
Q Consensus 385 ~L~D---~~~dVR~aA~~aL 401 (939)
++.. .++.||+.+..++
T Consensus 88 l~~~~~~~~~~Vk~kil~ll 107 (133)
T cd03561 88 IAKNSPKYDPKVREKALELI 107 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHH
Confidence 6654 3666665554433
No 226
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=38.37 E-value=1.7e+02 Score=29.74 Aligned_cols=78 Identities=14% Similarity=0.043 Sum_probs=60.0
Q ss_pred CCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhh-ccccc-chhhhhhHHHHHHHhhCC-CCchHHHHHHHHHHHhcch
Q 002304 143 NVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLK-HVVFE-DVDLIQGCCCRAVELLRD-HEDCVRCAAVRVVSEWGKM 219 (939)
Q Consensus 143 ~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~-~~~~~-~~~l~~~i~~~l~~lL~D-dd~~VR~aAV~aLg~lg~~ 219 (939)
..++...+..|.+.+++.+|.|-.-|+.-|..+.. .|... ..-...++...+.+++.+ .+..||....+.+..|+..
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 36777888999999999999999999988877654 23211 112234566778888888 8999999999999999975
Q ss_pred h
Q 002304 220 L 220 (939)
Q Consensus 220 ~ 220 (939)
+
T Consensus 112 f 112 (144)
T cd03568 112 F 112 (144)
T ss_pred h
Confidence 4
No 227
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=37.07 E-value=6.3e+02 Score=28.16 Aligned_cols=125 Identities=18% Similarity=0.053 Sum_probs=62.7
Q ss_pred cchHHHhhccCCC--cHHHHHHHHHHHHhccccchhhHHHHHHHH----HHHhcCCCHHHHHHHHHHHhhhhhcccccch
Q 002304 302 AAAGTFVHGFEDE--FYEVRKSACSSLGSLVILSEKFAGEALNLL----VDMLNDDSVTVRLQALETMHIMVTCEHLNLE 375 (939)
Q Consensus 302 ~a~gaLI~~LeDE--~~eVR~aAaeALGkL~~~s~~fA~~ALd~L----vdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~ 375 (939)
|-...+-..++|+ +..||.+|++||..+....+.--.+++..+ -..++...+.|=-.-+..+-.|.+
T Consensus 111 G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~------- 183 (249)
T PF06685_consen 111 GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYP------- 183 (249)
T ss_pred CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCH-------
Confidence 3444555556554 668999999999887754332222333332 223555555554455555555542
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHH
Q 002304 376 DKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEV 455 (939)
Q Consensus 376 E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~L 455 (939)
++.+ +.||++-.. |.+...- .. .+....++..-. =+++..+-++| .++...+.++
T Consensus 184 ~EL~-----------~~I~~~f~~--~lVd~~~-i~----~e~ve~~l~~~~------e~~~~~~~~~~-~lI~d~~~e~ 238 (249)
T PF06685_consen 184 EELL-----------PEIRKAFED--GLVDPSF-ID----LEDVEEALAREK------ERVLPRLRKSY-ELINDTIEEM 238 (249)
T ss_pred HHhH-----------HHHHHHHHc--CCCCccc-cC----HHHHHHHHhhcH------HHHHHHHHhcc-hhHHHHHHHH
Confidence 1222 556655543 3321110 01 122222222211 24556666664 7777777777
Q ss_pred hhh
Q 002304 456 CQE 458 (939)
Q Consensus 456 l~~ 458 (939)
-.+
T Consensus 239 ~~w 241 (249)
T PF06685_consen 239 EWW 241 (249)
T ss_pred hcC
Confidence 766
No 228
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=36.91 E-value=2.7e+02 Score=29.71 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=44.8
Q ss_pred hcchHHHhhccCCCcHHHHHHHHHHHHhcccc-chh----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL-SEK----FAGEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 301 s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~-s~~----fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
....+.|..||...+.--|--|....-.+-.. ..+ +..+.+.+|-.+||-.++.|...++++|..+.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv 108 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLV 108 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34688899998765555566666666554322 111 12456667778888888888888888888873
No 229
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=34.76 E-value=80 Score=32.66 Aligned_cols=98 Identities=15% Similarity=-0.015 Sum_probs=51.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNR 229 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~ 229 (939)
...+.+++++|...=+...++=|..=..+|+.....+--+.+..+++-=....-.=+..|++.||.+-.-
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GG---------- 93 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGG---------- 93 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SS----------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCC----------
Confidence 4456677777776645545554444444555322222222223222222233444588899999877542
Q ss_pred cccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc
Q 002304 230 IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 230 i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i 262 (939)
-.+..|+.+|.+.+..+...||++|.+.
T Consensus 94 -----YNV~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 94 -----YNVQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp -----TTHHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred -----CcHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 2356889999888999999999999885
No 230
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=34.68 E-value=1.3e+02 Score=28.09 Aligned_cols=62 Identities=16% Similarity=0.036 Sum_probs=46.6
Q ss_pred cCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCc--hHHHHHHHHHHHhcch
Q 002304 158 KDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHED--CVRCAAVRVVSEWGKM 219 (939)
Q Consensus 158 ~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~--~VR~aAV~aLg~lg~~ 219 (939)
.|.+-.+|.-|++-|+.+...-......+...+...+.+.+.|+.. ..+.-|+..|..+|..
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556789999999999998653212335556677888888887754 4689999999999874
No 231
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=34.55 E-value=9.5e+02 Score=29.47 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=78.9
Q ss_pred hhHHHHHHHhhcCCCH--HHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccc-c------------chh-hh
Q 002304 234 DVVFIQLCSMIRDMRM--EVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSL-G------------AAE-CF 296 (939)
Q Consensus 234 ddaf~aLc~aL~D~s~--~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~-l------------~~d-~~ 296 (939)
++.|..|..|+.-++. .||.+|++.|.++-. ..-+.+...=-+++|.--|+.++..+ . +.+ ..
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~ 258 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQ 258 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4567777778776654 679999999988732 12222211111222222222222110 0 001 12
Q ss_pred hhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc-----hhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 297 EISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS-----EKFA-GEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 297 ~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s-----~~fA-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
.++..+.+++.+.-..-.++.+=+.++-|||+.+... ..+. .++-+-|.-+.-..++..|+.|--|..-|+.
T Consensus 259 ~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 259 RLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 3455667777777777667788888888998766311 1111 4555667666667788999999888887774
No 232
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.24 E-value=2.8e+02 Score=26.52 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=49.0
Q ss_pred chhhHHHHHHHHHHHhcCCCH--HHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchh
Q 002304 333 SEKFAGEALNLLVDMLNDDSV--TVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLE 410 (939)
Q Consensus 333 s~~fA~~ALd~LvdmLnDe~~--~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~ 410 (939)
+++-..+++..|....+|... .||..|-++..++.. +++++.||.+- +++
T Consensus 11 ~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~------------------e~e~p~vRaAt--aIs-------- 62 (93)
T COG1698 11 SEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN------------------EGESPAVRAAT--AIS-------- 62 (93)
T ss_pred hHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC------------------CCCCchhHHHH--HHH--------
Confidence 444557888899999999854 799999988887764 24678899433 222
Q ss_pred HHHHHHHHHHHhhccCcc---c-hHHHHHHHHHhh
Q 002304 411 FFRLFIDGLLENLKIYPQ---D-EADVFSVLFFIG 441 (939)
Q Consensus 411 ~l~~~l~~LL~~L~~~pe---D-r~~I~~aL~~LG 441 (939)
.|+.+..+|- - |-.||..+.+|.
T Consensus 63 --------iLeeisnDPNmP~h~RT~iw~vis~LE 89 (93)
T COG1698 63 --------ILEEISNDPNMPLHARTLIWNVISQLE 89 (93)
T ss_pred --------HHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 2233333432 2 778898888775
No 233
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=34.24 E-value=6.3e+02 Score=32.33 Aligned_cols=128 Identities=17% Similarity=0.186 Sum_probs=82.6
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhcc
Q 002304 232 CSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGF 311 (939)
Q Consensus 232 lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~L 311 (939)
|.+--+.....||.-.++.|-..||--+..+.--...+.. -. + .-+.++-+|..|
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~------~v------r-------------qlggI~kLv~Ll 284 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKS------RV------R-------------QLGGIPKLVALL 284 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHH------HH------H-------------HhccHHHHHHHh
Confidence 4444556677788777777777777666555221111100 00 0 234566789999
Q ss_pred CCCcHHHHHHHHHHHHhccccc----hhhH---HHHHHHHHHHhcC-CCHHHHHHHHHHHhhhhhccccc--chhhHHHH
Q 002304 312 EDEFYEVRKSACSSLGSLVILS----EKFA---GEALNLLVDMLND-DSVTVRLQALETMHIMVTCEHLN--LEDKHMHM 381 (939)
Q Consensus 312 eDE~~eVR~aAaeALGkL~~~s----~~fA---~~ALd~LvdmLnD-e~~~VRl~Aa~ALgkI~~~~~i~--l~E~aL~~ 381 (939)
+....+|.+.|+.+|-+|.-.. ..++ ..-++.|+..+.- -|.+||......|++|+..+.++ +..+++.+
T Consensus 285 ~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~t 364 (717)
T KOG1048|consen 285 DHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALST 364 (717)
T ss_pred cCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 9999999999999998876321 2233 2347888888887 68899999999999999654332 23445555
Q ss_pred HHH
Q 002304 382 FLG 384 (939)
Q Consensus 382 LL~ 384 (939)
|..
T Consensus 365 Lt~ 367 (717)
T KOG1048|consen 365 LTD 367 (717)
T ss_pred HHH
Confidence 444
No 234
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.16 E-value=3.4e+02 Score=31.90 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=47.2
Q ss_pred hcchHHHhhccC--CCcHHHHHHHHHHHHhccccchhhH----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 301 SAAAGTFVHGFE--DEFYEVRKSACSSLGSLVILSEKFA----GEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 301 s~a~gaLI~~Le--DE~~eVR~aAaeALGkL~~~s~~fA----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
.|+..+-+.++. -.-..|.+.|+..+.++...+.++- .--++.|+.+..-+.+.+|..|-.||..+|
T Consensus 371 ~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 371 AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 344444444443 2345788888888888876655543 234677888888888999999999999888
No 235
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=32.58 E-value=6e+02 Score=29.76 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=73.7
Q ss_pred CCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHH-HHHhhc------CCCHHHHHHHHHHHhcccCCcHHHHHHH
Q 002304 201 HEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQ-LCSMIR------DMRMEVRVEAFNALGKVGMISEIVLLQT 273 (939)
Q Consensus 201 dd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~a-Lc~aL~------D~s~~VR~~AA~ALG~i~~vs~~~Llqt 273 (939)
|..+.|.+|.+.|-.+....... +...+.. +...++ ..+|+-.-.|...+|.+...+...
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~---------v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~---- 289 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQ---------VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTT---- 289 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--B----
T ss_pred ccCCcHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccc----
Confidence 45788999999988777532110 1122222 222333 467777777777777764311000
Q ss_pred hhHHHhhhhhhhhhccccchhhh---hhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhc
Q 002304 274 LSKKVLGATKEKKFHSLGAAECF---EISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL-SEKFAGEALNLLVDMLN 349 (939)
Q Consensus 274 L~kklm~~lk~kr~~~~l~~d~~---~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~-s~~fA~~ALd~LvdmLn 349 (939)
+....+ .++.+ ......+.+-|. .=.++.+.+|..|++-+....+. .++....+++.|+..|+
T Consensus 290 -----------~~Gvt~-~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~ 356 (370)
T PF08506_consen 290 -----------KSGVTQ-TNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQ 356 (370)
T ss_dssp -----------TTB-S--B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTT
T ss_pred -----------cCCccc-ccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhC
Confidence 000000 01111 122333444444 22366788999999999776643 33445678999999999
Q ss_pred CCCHHHHHHHHHHH
Q 002304 350 DDSVTVRLQALETM 363 (939)
Q Consensus 350 De~~~VRl~Aa~AL 363 (939)
+++..|+.-|+.++
T Consensus 357 ~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCcchhhhhhhhC
Confidence 99999999998875
No 236
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=32.37 E-value=3.5e+02 Score=27.55 Aligned_cols=134 Identities=15% Similarity=0.081 Sum_probs=75.7
Q ss_pred CCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHH-HHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHH
Q 002304 200 DHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFI-QLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKV 278 (939)
Q Consensus 200 Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~-aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kkl 278 (939)
...++||..|.=++..+-+... ++ ..+.+. -+-..+.+.+..-...|..++..+=...++.--+.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~--~~-------~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~---- 82 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAR--EE-------FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF---- 82 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC----
T ss_pred CCCHhHHHHHHHHHHHHHHHhH--HH-------HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH----
Confidence 6788999999888887732110 00 012222 222344444444666677777777554444422222
Q ss_pred hhhhhhhhhccccchhhhhhhhhcchHHHhhccC--CCcHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHh-cCCC
Q 002304 279 LGATKEKKFHSLGAAECFEISASAAAGTFVHGFE--DEFYEVRKSACSSLGSLVIL---SEKFAGEALNLLVDML-NDDS 352 (939)
Q Consensus 279 m~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le--DE~~eVR~aAaeALGkL~~~---s~~fA~~ALd~LvdmL-nDe~ 352 (939)
..++..+.++.... -++..+-.++++.|..-... ...+....++.|.+.+ ++++
T Consensus 83 --------------------~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~ 142 (157)
T PF11701_consen 83 --------------------LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKD 142 (157)
T ss_dssp --------------------CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-
T ss_pred --------------------hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccc
Confidence 12344444554444 56667777777777443321 1113467789999999 5666
Q ss_pred HH-HHHHHHHHHhhh
Q 002304 353 VT-VRLQALETMHIM 366 (939)
Q Consensus 353 ~~-VRl~Aa~ALgkI 366 (939)
+. ||..|+-+|-|+
T Consensus 143 ~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 143 DSEIRVLAAVGLCKL 157 (157)
T ss_dssp HH-CHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhcC
Confidence 66 888888887664
No 237
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=31.14 E-value=1.4e+02 Score=37.67 Aligned_cols=115 Identities=9% Similarity=-0.065 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCC
Q 002304 186 LIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMI 265 (939)
Q Consensus 186 l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~v 265 (939)
..+.+|..+...+..++.. .|..+|..+.+...-. ....+- .++-..+-....++.--.++...++.|+++...
T Consensus 438 ~~~~lW~~l~~~~~~~~~~---la~~lL~~~~~l~~l~-~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~ 511 (727)
T PF12726_consen 438 ISPNLWKALLKSLDSDNPD---LAKALLKSLSPLIGLE-KFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDF 511 (727)
T ss_pred hhHHHHHHHHHhhcCCChH---HHHHHHHHHHHhcccc-ccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455777777777766655 3444444444321000 000000 011112233444555557778889999999888
Q ss_pred cHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcc
Q 002304 266 SEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLV 330 (939)
Q Consensus 266 s~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~ 330 (939)
+++.|.+.+. +..+..+++.++=.++.+++.+|.+=|.+.-
T Consensus 512 ~~~~L~~l~~------------------------d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~ 552 (727)
T PF12726_consen 512 DPSHLKELLS------------------------DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAF 552 (727)
T ss_pred CHHHHHHHHc------------------------CcchhhHHHhheeCCChHHHHHHHHHHHHHh
Confidence 8777765543 4567788999998888899998887776654
No 238
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.50 E-value=5.4e+02 Score=30.30 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=56.6
Q ss_pred hHHHhhccCCCcHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHH
Q 002304 304 AGTFVHGFEDEFYEVRKSACSSLGSLVILSE---KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMH 380 (939)
Q Consensus 304 ~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~---~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~ 380 (939)
+..|+..+++....=|.-++..+|......+ .--...-+.+..+|+|..+.||..++.+|++--. .=+
T Consensus 9 ~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~~~---------~Pr 79 (364)
T COG5330 9 DQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQCET---------APR 79 (364)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhCCc---------CCH
Confidence 4467888888888888888888877654333 2224566777888999999999999999987432 223
Q ss_pred HHHHhcCCCCHHHH
Q 002304 381 MFLGTLVDNSELVR 394 (939)
Q Consensus 381 ~LL~~L~D~~~dVR 394 (939)
.++..|..+..+|=
T Consensus 80 ~l~~~La~d~~~IA 93 (364)
T COG5330 80 ALARALAEDPISIA 93 (364)
T ss_pred HHHHHHhcCChhHh
Confidence 45555555555554
No 239
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=29.12 E-value=4.2e+02 Score=30.59 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHHHhccc----cchhhHHHHHHHHHHHhcCCCH--HHHHHHHHHHhhhhh
Q 002304 312 EDEFYEVRKSACSSLGSLVI----LSEKFAGEALNLLVDMLNDDSV--TVRLQALETMHIMVT 368 (939)
Q Consensus 312 eDE~~eVR~aAaeALGkL~~----~s~~fA~~ALd~LvdmLnDe~~--~VRl~Aa~ALgkI~~ 368 (939)
-|+.|.+|..|+.-|+.+.. ..+.+-.+....|...|-|+.. ...-.|+..|+.+|+
T Consensus 278 ~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 278 DDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence 47889999999999987663 3555667788888888887754 346778888888874
No 240
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=29.01 E-value=4.5e+02 Score=25.83 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=47.5
Q ss_pred HhhccCCCc-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCH--HHHHHHHHHHhhhhhcccccchhhHHHHHH
Q 002304 307 FVHGFEDEF-YEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSV--TVRLQALETMHIMVTCEHLNLEDKHMHMFL 383 (939)
Q Consensus 307 LI~~LeDE~-~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~--~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL 383 (939)
+-.+|.++. ......-+.++..+|.. +=|...+...+.-+.|+.+ .++.-.+-+|..+|. .++++..++
T Consensus 28 l~~gL~~~~~~~a~i~lastlr~LG~~--deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr------~~eAl~~~l 99 (120)
T PF12688_consen 28 LAAGLSGADRRRALIQLASTLRNLGRY--DEALALLEEALEEFPDDELNAALRVFLALALYNLGR------PKEALEWLL 99 (120)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC------HHHHHHHHH
Confidence 334454442 33455566666777742 2223334444444444444 445444556666663 367889999
Q ss_pred HhcCCCCHHHHHHHH
Q 002304 384 GTLVDNSELVRCAAR 398 (939)
Q Consensus 384 ~~L~D~~~dVR~aA~ 398 (939)
.+|.+..+.-|+++.
T Consensus 100 ~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 100 EALAETLPRYRRAIR 114 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888887776654
No 241
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=28.99 E-value=89 Score=30.48 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=20.8
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhcc
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLV 330 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~ 330 (939)
.-++|+.+|+||+..||.-||..+-.+.
T Consensus 48 ~r~aLl~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 48 QRDALLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred hHHHHHHHHcCCChhHHHHHHHHHHHhC
Confidence 4568888999999999998887665543
No 242
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=28.65 E-value=4.3e+02 Score=27.85 Aligned_cols=81 Identities=19% Similarity=0.038 Sum_probs=47.7
Q ss_pred hhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHH
Q 002304 300 ASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHM 379 (939)
Q Consensus 300 ~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL 379 (939)
.+.+.+.|+....-.+.+-...+...|.+-.. --...|+..|-.-+.| +.||.-|++.|.++.+.. + ..-+
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~---~~p~~AL~LL~~~f~~--~~VR~yAv~~L~~~~d~~-l---~~yL 113 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQWPP---ISPEDALELLSPNFPD--PFVRQYAVRRLESLSDEE-L---LFYL 113 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHC---TTHHHHHHCTSTT-----HHHHHHHHHHHCTS-HHH-H---HHHH
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHcCCC---CCHHHHHHHHHhhccH--HHHHHHHHHHHHHcCchH-H---HHHH
Confidence 46777788887776666555555555544332 1245566666666666 888888888888766311 1 2356
Q ss_pred HHHHHhcCCC
Q 002304 380 HMFLGTLVDN 389 (939)
Q Consensus 380 ~~LL~~L~D~ 389 (939)
+.|+.+|+-+
T Consensus 114 pQLVQaLr~e 123 (184)
T PF00613_consen 114 PQLVQALRYE 123 (184)
T ss_dssp HHHHHHGGGS
T ss_pred HHHHHHheec
Confidence 6777776644
No 243
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=28.52 E-value=1.7e+02 Score=31.89 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhc--cCCCc-cccccchH-HHHHHHHHHHHHhhhhhhc
Q 002304 633 ILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFV--PAKNI-HHYEQGEL-EFLLGKLDRSLRELRCRFL 708 (939)
Q Consensus 633 ~L~~~~~eL~~l~~~~~~~~g~~~f~~~Yl~~~~ll~k~~~~~~--~~~~~-~~~~~~~~-~~~l~kL~~~~~~l~~~f~ 708 (939)
+++-|++.+..+ .+++..+++.++.=+.+|...+.+.++.+. +-..+ +....++- ....+++...+++.+..+.
T Consensus 76 ly~r~i~~~~~~--~d~~~~~s~LclEcf~~~~~~v~~~y~~k~~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~~ 153 (219)
T PF14677_consen 76 LYWRCISRLSEV--EDFDKQVSLLCLECFLEILSTVCQRYPDKFSQFLSAIDMTDDNAEEEKDLTERIQFQIRQFQRELE 153 (219)
T ss_dssp HHHHHH--------------HHHHHHHHHHHHHHHHHHTSGGGHHHHHHHTS----STTTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhh--cCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCccccccHHHHHHHHHHHHHHHHh
Confidence 455688888888 444577777777778888888877777554 10111 12222221 3445555555555555553
Q ss_pred CC--ChhHHHHHHHHHHHHHhhhhhhheeh-hhhhhhHhHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Q 002304 709 GL--SKEEELHVLELMLVSCLLRLSKFEIC-FYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSL 774 (939)
Q Consensus 709 Gl--s~~e~~~V~el~L~a~al~L~~~~~~-~~~~~l~~~~~~i~~ve~~~~~~~~~p~~F~~~l~k~l 774 (939)
.+ +.+|.-.-++..++-..+-...--.. ++.. ....++-+..+|++.+++-.+|+..+...|
T Consensus 154 ~~~s~~~e~~~~K~~~~Lv~ils~L~~~l~~~s~~----~~q~~~W~~~~ck~~~l~d~~~~k~ll~lL 218 (219)
T PF14677_consen 154 NFLSSEEEDFNSKEAVLLVNILSQLSDHLDPSSDQ----FTQMLSWTLKFCKENSLEDSSFCKGLLSLL 218 (219)
T ss_dssp HHHHS--SS--SHHHHHHHHHHHHHTTSS-SSSSH----HHHHHHHHHHHHHS---S-HHHHHHHHHHH
T ss_pred hccccccccccchhHHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Confidence 22 44444455555544444433332222 2222 234666677899999999999999887443
No 244
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=27.84 E-value=5e+02 Score=28.91 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=69.6
Q ss_pred hHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhc-ccccccccchhHHHHHHHhhc--------CCCHHHHHHHHHHH
Q 002304 189 GCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACI-DEKNRIDCSDVVFIQLCSMIR--------DMRMEVRVEAFNAL 259 (939)
Q Consensus 189 ~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~-~~~~~i~lvddaf~aLc~aL~--------D~s~~VR~~AA~AL 259 (939)
-+.|.+..++.|.++.+|..+++.|..+-....+.. +.=.+.-+.+-...+|...+. |.+..+=..|-.+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 357888999999999999999999998876432111 000011111222346666776 88888877777777
Q ss_pred hcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcc
Q 002304 260 GKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLV 330 (939)
Q Consensus 260 G~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~ 330 (939)
-.+-.+.. ..... ........++..+..+.+.+.-+=.+..+|...++.|..+.
T Consensus 199 ~~L~~~~~------------~~~~~-----~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 199 LSLLKTQE------------NDDSN-----PRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHHHHhhc------------cCCcc-----cchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 66521000 00000 00000012234445555556555446688888877775543
No 245
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=27.45 E-value=3.9e+02 Score=27.17 Aligned_cols=138 Identities=15% Similarity=0.018 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHH
Q 002304 159 DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFI 238 (939)
Q Consensus 159 D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~ 238 (939)
...+.||..|+-.+.++.+... ....+.+-.-+...+.+.+.+-...|+.++..+=+... +...++.+.+...+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~---~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~---dv~~~l~~~eg~~~ 89 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAR---EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPP---DVGSELFLSEGFLE 89 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH---HHHHHHCCTTTHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCH---HHHHHHHhhhhHHH
Confidence 4678999999999998864321 12223344444555666666677778888876544321 11123344455666
Q ss_pred HHHHhhc--CCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC-CCc
Q 002304 239 QLCSMIR--DMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE-DEF 315 (939)
Q Consensus 239 aLc~aL~--D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le-DE~ 315 (939)
.+..++. -.+..+-.++++.|.--.... ..| +.+.....+-|.+.+. +++
T Consensus 90 ~l~~~~~~~~~~~~~~~~~lell~aAc~d~-----------------~~r----------~~I~~~~~~~L~~~~~~~~~ 142 (157)
T PF11701_consen 90 SLLPLASRKSKDRKVQKAALELLSAACIDK-----------------SCR----------TFISKNYVSWLKELYKNSKD 142 (157)
T ss_dssp HHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-----------------HHH----------HCCHHHCHHHHHHHTTTCC-
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHccH-----------------HHH----------HHHHHHHHHHHHHHHccccc
Confidence 6777777 777777777777776543210 000 0123445566777774 444
Q ss_pred HH-HHHHHHHHHHhc
Q 002304 316 YE-VRKSACSSLGSL 329 (939)
Q Consensus 316 ~e-VR~aAaeALGkL 329 (939)
.. ||..|+-.|+|+
T Consensus 143 ~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 143 DSEIRVLAAVGLCKL 157 (157)
T ss_dssp HH-CHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhcC
Confidence 44 899999998875
No 246
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=26.70 E-value=5.8e+02 Score=32.09 Aligned_cols=137 Identities=16% Similarity=0.113 Sum_probs=88.1
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHH------HHHhhcCCCHHHHHHHHHHHhcccC-
Q 002304 192 CRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQ------LCSMIRDMRMEVRVEAFNALGKVGM- 264 (939)
Q Consensus 192 ~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~a------Lc~aL~D~s~~VR~~AA~ALG~i~~- 264 (939)
..++....|-++..|..++-.|+.|-+.+ ++.|.+ ..-+|.|-+..||....+.|-.+-.
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lv-------------P~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~ 344 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLV-------------PDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSR 344 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcc-------------hHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhc
Confidence 44677889999999999999999987643 333333 3358999999999999999988732
Q ss_pred Cc-HHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHH
Q 002304 265 IS-EIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNL 343 (939)
Q Consensus 265 vs-~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~ 343 (939)
.+ .+.+.+-++ +|. .. .+--+--|-+- ||..++..++.+... .-+...++..
T Consensus 345 ~p~~d~ir~f~e-------------------RFk---~r---ILE~~r~D~d~-VRi~sik~l~~lr~l-g~L~~SeIlI 397 (740)
T COG5537 345 IPHTDAIRRFVE-------------------RFK---DR---ILEFLRTDSDC-VRICSIKSLCYLRIL-GVLSSSEILI 397 (740)
T ss_pred CCcchHHHHHHH-------------------HHH---HH---HHHHHhhccch-hhHHHHHHHHHHHHh-cccchhHHHH
Confidence 22 112222221 111 00 11123347777 999999999776531 0111345666
Q ss_pred HHHHhcCCCHH---HHHHHHHHHhhhhh
Q 002304 344 LVDMLNDDSVT---VRLQALETMHIMVT 368 (939)
Q Consensus 344 LvdmLnDe~~~---VRl~Aa~ALgkI~~ 368 (939)
+-..+=|.+++ +|.++...+-++-+
T Consensus 398 vsscmlDi~pd~r~~~~E~v~~icK~~a 425 (740)
T COG5537 398 VSSCMLDIIPDSRENIVESVESICKIDA 425 (740)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHH
Confidence 66667777777 67777777777654
No 247
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=26.60 E-value=2.7e+02 Score=27.68 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=38.1
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
.+.+++|..=. .+|.+...++.-+..|+..|...++..++.|.+.|+..|--+.
T Consensus 17 ~~~~~Dw~~~l----~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lv 70 (140)
T PF00790_consen 17 SLPSPDWSLIL----EICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALV 70 (140)
T ss_dssp TSSS--HHHHH----HHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH----HHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46677775444 4455444445556889999999999999999999988777665
No 248
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=26.54 E-value=2.9e+02 Score=29.04 Aligned_cols=82 Identities=16% Similarity=0.051 Sum_probs=56.6
Q ss_pred hhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHH
Q 002304 300 ASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHM 379 (939)
Q Consensus 300 ~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL 379 (939)
.+.+.+.|++...=.+++=...|..-|.+-...+ ...|+..|-..+.| +.||.-|++.|.++++. .+ ..-+
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~---~~~aLeLL~~~f~d--~~VR~yAV~~L~~~sd~-eL---~~yL 107 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLK---PEQALELLDCNFPD--EHVREFAVRCLEKLSDD-EL---LQYL 107 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCC---HHHHHHHCCCcCCC--HHHHHHHHHHHHhCCHH-HH---HHHH
Confidence 4677888888876555544455555555443323 25788888888877 99999999999998852 11 2467
Q ss_pred HHHHHhcCCCC
Q 002304 380 HMFLGTLVDNS 390 (939)
Q Consensus 380 ~~LL~~L~D~~ 390 (939)
+.|+.+|+-+.
T Consensus 108 ~QLVQaLKyE~ 118 (171)
T cd00872 108 LQLVQVLKYEP 118 (171)
T ss_pred HHHHHHHHccc
Confidence 78888888654
No 249
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.30 E-value=8.9e+02 Score=26.53 Aligned_cols=123 Identities=15% Similarity=0.004 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcC-C
Q 002304 317 EVRKSACSSLGSLVILSEKFAGEALNLLVDMLND-------DSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLV-D 388 (939)
Q Consensus 317 eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnD-------e~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~-D 388 (939)
..|...+..+| + .++....+...+-+.+++ -.+..|..+..+..+-|. ++..+.+.+..+ +
T Consensus 130 ~lr~~~~~~a~--~--~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~-------~~~~~~l~~~~~~~ 198 (324)
T PF11838_consen 130 LLRALLLSLAC--G--DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGD-------EEEWDFLWELYKNS 198 (324)
T ss_dssp HHHHHHHHHHH--T---HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS---------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--c--chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhh-------HhhHHHHHHHHhcc
Confidence 45555555555 2 444445555555555543 266788888887777663 334566666555 6
Q ss_pred CCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHH
Q 002304 389 NSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEV 455 (939)
Q Consensus 389 ~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~L 455 (939)
.+++.|..+..+|++.+. ...++.+++-++.+ +..+ .+++..++..+..+||.....+.+.+
T Consensus 199 ~~~~~k~~~l~aLa~~~d--~~~~~~~l~~~l~~-~~v~--~~d~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPD--PELLKRLLDLLLSN-DKVR--SQDIRYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp STHHHHHHHHHHHTT-S---HHHHHHHHHHHHCT-STS---TTTHHHHHHHHH-CSTTCHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCC--HHHHHHHHHHHcCC-cccc--cHHHHHHHHHHhcCChhhHHHHHHHH
Confidence 688999999999998765 34455555555552 1022 22355566666645555444444433
No 250
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.04 E-value=2.4e+02 Score=33.04 Aligned_cols=74 Identities=19% Similarity=0.056 Sum_probs=53.7
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcchhh-hhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHH
Q 002304 191 CCRAVELLRDHEDCVRCAAVRVVSEWGKMLI-ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIV 269 (939)
Q Consensus 191 ~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~-~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~ 269 (939)
...++.++++....=|..++.+++....+.. ...+ .+..-...-.++.|++..||..+|.+|++-..++..+
T Consensus 9 ~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d-------~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~~~~Pr~l 81 (364)
T COG5330 9 DQDLIRLLEEASSGERALAARVLAFASLQRPLSRED-------MRQFEDLARPLLDDSSEEVRRELAAALAQCETAPRAL 81 (364)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHHhhCccHHHHHHHHHHHHhCCcCCHHH
Confidence 4567888999999999999999997554211 0111 1222234456889999999999999999998887666
Q ss_pred HH
Q 002304 270 LL 271 (939)
Q Consensus 270 Ll 271 (939)
..
T Consensus 82 ~~ 83 (364)
T COG5330 82 AR 83 (364)
T ss_pred HH
Confidence 54
No 251
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=25.97 E-value=1e+02 Score=40.53 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=30.1
Q ss_pred hHHHhhccCCC--cHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q 002304 304 AGTFVHGFEDE--FYEVRKSACSSLGSLVILSEKFAGEALNLLVDML 348 (939)
Q Consensus 304 ~gaLI~~LeDE--~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmL 348 (939)
+-+|...|+|| ||.||.+||.+|.+-+..-+++. -.+.|+.++
T Consensus 676 ~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwt--G~~~Li~~F 720 (1180)
T KOG1932|consen 676 RSALTRTLEDERYFYRIRIAAAFALAKTANGESDWT--GPPHLIQFF 720 (1180)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHhhccccccc--ChHHHHHHH
Confidence 45788888888 89999999999999886433332 344444443
No 252
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=25.56 E-value=1.5e+02 Score=36.55 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=50.5
Q ss_pred HHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC
Q 002304 191 CCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM 264 (939)
Q Consensus 191 ~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~ 264 (939)
...+..++ ..+.+.||.++++-|+.+|+..++.++.+...+- .-.-....|.|.+|-|+..|-+|+|.++.
T Consensus 481 ~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~---Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe 552 (559)
T PF14868_consen 481 LTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPA---LSELFHMLLADRHWLLHQHALEAFGQFAE 552 (559)
T ss_pred HHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhH---HHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 34445566 6777779999999999999987655443222221 11223347899999999999999999965
No 253
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=25.05 E-value=3.7e+02 Score=34.29 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=88.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhhhc-----ccccch-hhHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCchhHH
Q 002304 340 ALNLLVDMLNDDSVTVRLQALETMHIMVTC-----EHLNLE-DKHMHMFLGTLVD-NSELVRCAARKILKLVKTPKLEFF 412 (939)
Q Consensus 340 ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~-----~~i~l~-E~aL~~LL~~L~D-~~~dVR~aA~~aLg~i~l~~~~~l 412 (939)
.++-|+++|+..+.+|..+|..||.++.-. .++++. ...++.++.+|.. .|.+||+.+..+|=.+.-. +++
T Consensus 276 gI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~l 353 (717)
T KOG1048|consen 276 GIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DAL 353 (717)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHH
Confidence 578899999999999999999999999731 223332 3678999999997 8899999998877554332 222
Q ss_pred HH-HHHHHHHhh-----ccCc--------------cchHHHHHHHHHhhcccccchH------HHHHHHhhhcCCCCCCC
Q 002304 413 RL-FIDGLLENL-----KIYP--------------QDEADVFSVLFFIGRSHGNFAA------CIIKEVCQEIEPDSDDK 466 (939)
Q Consensus 413 ~~-~l~~LL~~L-----~~~p--------------eDr~~I~~aL~~LG~~H~~lv~------~lv~~Ll~~i~p~~~~e 466 (939)
.+ ++..-+..| ..+. +.-..+-.||+++-+...+..+ -+|+.|+..+..+.+ .
T Consensus 354 K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~-~ 432 (717)
T KOG1048|consen 354 KMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQ-K 432 (717)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHH-h
Confidence 22 222222211 1121 1134556677666321111111 134555443322222 2
Q ss_pred CCCCchhHHHHHHHHhhccc
Q 002304 467 LGFDNARVAAFLVLAISVPL 486 (939)
Q Consensus 467 ~~~dd~~yiA~Lili~~A~~ 486 (939)
-+.||+.+..-+.+..|-+-
T Consensus 433 ~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 433 SDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccccchhHHHHHHHHhhcCc
Confidence 36689999999988888664
No 254
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.89 E-value=1.7e+03 Score=29.28 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=84.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhhhcc-cccchhhHHHHHHHhcCCCCHH----HHHHHHHHHhhccCCchhHHHHHH
Q 002304 342 NLLVDMLNDDSVTVRLQALETMHIMVTCE-HLNLEDKHMHMFLGTLVDNSEL----VRCAARKILKLVKTPKLEFFRLFI 416 (939)
Q Consensus 342 d~LvdmLnDe~~~VRl~Aa~ALgkI~~~~-~i~l~E~aL~~LL~~L~D~~~d----VR~aA~~aLg~i~l~~~~~l~~~l 416 (939)
..++.++-..-..+...--+||+-||..+ .-++ ++.++-+.+.|...+-+ |+..|+.++++-+..-. .+.+-
T Consensus 91 slIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kW-ptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efr--SdaL~ 167 (960)
T KOG1992|consen 91 SLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKW-PTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFR--SDALW 167 (960)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhccccchhh-HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccc--cHHHH
Confidence 34455555556777788888888888422 2223 36888888888855443 45566666666554321 12234
Q ss_pred HHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhccccCcCCCCCCC
Q 002304 417 DGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIP 496 (939)
Q Consensus 417 ~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~s~~~~~~~ip 496 (939)
..+--+|+++.+=--.+++.--.++++|++--. .++-|++- -..+++|-..+| ++ .||
T Consensus 168 ~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~-~l~~lf~v-------------lll~~klfysLn---~Q-----DiP 225 (960)
T KOG1992|consen 168 LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAA-ALNILFGV-------------LLLICKLFYSLN---FQ-----DIP 225 (960)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchh-HHHHHHHH-------------HHHHHHHHHhhh---cc-----cch
Confidence 444455555554445566666666666655533 33334432 012222222221 12 499
Q ss_pred hhhhhhhHhhhchhhhhhh
Q 002304 497 PQIFSYAVTLLGRISYALS 515 (939)
Q Consensus 497 ~~~fsh~~~~~~k~y~~l~ 515 (939)
+|.+.|.-.+.|-+-.||+
T Consensus 226 EFFEdnm~~wM~~F~k~l~ 244 (960)
T KOG1992|consen 226 EFFEDNMKTWMGAFHKLLT 244 (960)
T ss_pred HHHHhhHHHHHHHHHHHHh
Confidence 9877799977777777766
No 255
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=24.68 E-value=7.4e+02 Score=27.57 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 338 GEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 338 ~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
.-.+|+++.+++|.+..+|.+.++.|..+-.
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~ 148 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLE 148 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999988874
No 256
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.68 E-value=2.4e+02 Score=28.06 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=25.7
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVV 180 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~ 180 (939)
.++.+.|.+.++|.+|.|..-|++-|..+.+.|-
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 3667777888888888888888887777776653
No 257
>PTZ00479 RAP Superfamily; Provisional
Probab=24.59 E-value=1.3e+03 Score=27.87 Aligned_cols=124 Identities=11% Similarity=0.043 Sum_probs=84.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 002304 342 NLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLE 421 (939)
Q Consensus 342 d~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~ 421 (939)
+.+..+.+.=.++==-.-..++|++.-. ...+=+..++.....|..-.+.==..+..+|+.+++.+..-+..+...++.
T Consensus 86 ~Rilel~dtL~Pqqig~Ilyg~gKsr~~-~~efy~~~~~~v~~~L~~fssh~L~~i~wALsrL~Ird~~fL~~~ak~vl~ 164 (435)
T PTZ00479 86 NRLLELSDTLTPQQIGYIFYGYGKSRFL-NPEFYEKMLKFVQPLLPNFYSHSLMCIAWALNRVQIRDEAFLSRFAKEVGE 164 (435)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhhcCccHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 4455555555554334445666666532 111223444555555554444444567889999999999998888899999
Q ss_pred hhccCc-cchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCC
Q 002304 422 NLKIYP-QDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDK 466 (939)
Q Consensus 422 ~L~~~p-eDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e 466 (939)
+.+.+. +|--.+..++++||-.+..+..++...+-+.++.++..+
T Consensus 165 r~~~~r~~dl~k~~nslakLg~~~~~l~k~l~~~~~~rle~~~~~~ 210 (435)
T PTZ00479 165 KFDDIRTTDLIKICNSLAKLGGYTNNLKKFLSEKMVEKLESLFAQD 210 (435)
T ss_pred hccccCchhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhhcccc
Confidence 888885 677788999999998887888888888877776666544
No 258
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=24.51 E-value=1.1e+03 Score=26.91 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=118.1
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcchhh-h-hcccccccccchhHHHHHHHhhc-CCC---------HHHHHHHHHH
Q 002304 191 CCRAVELLRDHEDCVRCAAVRVVSEWGKMLI-A-CIDEKNRIDCSDVVFIQLCSMIR-DMR---------MEVRVEAFNA 258 (939)
Q Consensus 191 ~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~-~-~~~~~~~i~lvddaf~aLc~aL~-D~s---------~~VR~~AA~A 258 (939)
.+.+-+.|+.....+...|.+.|..+...-. . ..+.-...++.-.+|.+|...=. +.. ..||..+.+-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 3556677888888888888888876654100 0 00000112222233444432111 111 2888888877
Q ss_pred Hhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchh--
Q 002304 259 LGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEK-- 335 (939)
Q Consensus 259 LG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~-- 335 (939)
+-.+ ...+.....+.|. ..+..+++.++|.++..++=....+.|.+-....+.
T Consensus 138 ~Lsfl~~~~~~~~~~lL~------------------------~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~ 193 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLS------------------------QKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVS 193 (330)
T ss_pred HHHHHccCCHHHHHHHHH------------------------cCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCC
Confidence 6665 3334434333322 123466888888877777777778777653321111
Q ss_pred -------hHHHHHHHHHHHhcCCCH----HHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 336 -------FAGEALNLLVDMLNDDSV----TVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 336 -------fA~~ALd~LvdmLnDe~~----~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
|-..++..|..+.+.+.+ .|+-.|-+-|..++.....- =+..|....-|+....+.-..
T Consensus 194 r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~G----------v~f~d~~~~~~~~~~~~~~~~ 263 (330)
T PF11707_consen 194 RSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHG----------VCFPDNGWYPRESDSGVPVTI 263 (330)
T ss_pred hhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcc----------cccCCCCcCcCcccccccccc
Confidence 234566777777766666 66666666666655311000 011122111111000000000
Q ss_pred cCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhh
Q 002304 405 KTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 405 ~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
.-.....-+..+-.++..++..-++++ ++-+-+|=+..|+++.+-..++-.
T Consensus 264 ~~~~~~~~Nk~L~~ll~~lkp~e~~~q--~~Lvl~Il~~~PeLva~Y~~~~~~ 314 (330)
T PF11707_consen 264 NNKSFKINNKLLLNLLKKLKPWEDDRQ--QELVLKILKACPELVAPYFNNLPY 314 (330)
T ss_pred cCCCCCcccHHHHHHHHHCCCCccHHH--HHHHHHHHHHChHHHHHHHHhhhh
Confidence 111122234567788887776665554 555666666668998877777643
No 259
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=24.11 E-value=2.1e+02 Score=29.61 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=56.8
Q ss_pred cchHHHhhccCCCcHHHHHHHHHHHHhcccc--chhhHHHH--HHHHHHHhcCCCHHHHHHHHHHHhhhhhcc
Q 002304 302 AAAGTFVHGFEDEFYEVRKSACSSLGSLVIL--SEKFAGEA--LNLLVDMLNDDSVTVRLQALETMHIMVTCE 370 (939)
Q Consensus 302 ~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~--s~~fA~~A--Ld~LvdmLnDe~~~VRl~Aa~ALgkI~~~~ 370 (939)
.+.+-|+..|+.++.-...-++..||.+... +.+|..++ ++.++..+.|+.+.+=..|+-+|.-+...+
T Consensus 58 ~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 58 DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcc
Confidence 4678899999999999999999999998753 33444444 467788999999999999999999998744
No 260
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=24.07 E-value=1.3e+02 Score=27.28 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=37.6
Q ss_pred HHHHHHHHHhccccchhhH----HHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhh
Q 002304 319 RKSACSSLGSLVILSEKFA----GEALNLLVDMLN-DDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 319 R~aAaeALGkL~~~s~~fA----~~ALd~LvdmLn-De~~~VRl~Aa~ALgkI~~ 368 (939)
.++|.-++|.++.....+. ...++.++++.+ .+...||--|..+||-|+.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 4788889999886433322 357788888776 6788999999999999884
No 261
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.80 E-value=1.3e+03 Score=27.64 Aligned_cols=96 Identities=18% Similarity=0.091 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhhhhHHH-HHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHH
Q 002304 162 PYVREAALNGLVCLLKHVVFEDVDLIQGCCC-RAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQL 240 (939)
Q Consensus 162 p~VRraAl~AL~~L~~~~~~~~~~l~~~i~~-~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aL 240 (939)
-+.|-+|++|||.+...-. ......++. .+...|+.....=|+.|.-++.+|+.......... . ....-..|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~---~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~---~-~~~l~~~L 173 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWP---ESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSP---P-PQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCc---c-HHHHHHHH
Confidence 4678999999999876421 122334555 58999999999999999999999997532211100 0 12333566
Q ss_pred HHhhcCCCHHHHHHHHHHHhcccC
Q 002304 241 CSMIRDMRMEVRVEAFNALGKVGM 264 (939)
Q Consensus 241 c~aL~D~s~~VR~~AA~ALG~i~~ 264 (939)
...|++++...=.+.+-.|.++..
T Consensus 174 ~~~L~~~~~~~Y~El~~~l~~lr~ 197 (441)
T PF12054_consen 174 LEILENPEPPYYDELVPSLKRLRT 197 (441)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH
Confidence 677775554444444444444433
No 262
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=23.65 E-value=1.6e+02 Score=30.99 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 002304 339 EALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDG 418 (939)
Q Consensus 339 ~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~ 418 (939)
+|++.++...+-.++.-...+.+.|..-.+. -.+++++-|-....| +.||+-|...|........ ...+..
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~----~p~~AL~LL~~~f~~--~~VR~yAv~~L~~~~d~~l---~~yLpQ 115 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPI----SPEDALELLSPNFPD--PFVRQYAVRRLESLSDEEL---LFYLPQ 115 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCT----THHHHHHCTSTT-----HHHHHHHHHHHCTS-HHHH---HHHHHH
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCC----CHHHHHHHHHhhccH--HHHHHHHHHHHHHcCchHH---HHHHHH
Confidence 5888888888888887667888888776531 124566666666667 9999999999988554433 236888
Q ss_pred HHHhhccCccchHHHHHHHHHhhcccccchHHHH
Q 002304 419 LLENLKIYPQDEADVFSVLFFIGRSHGNFAACII 452 (939)
Q Consensus 419 LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv 452 (939)
|..+|+-.+.......+-|-+-+.+++.+...+.
T Consensus 116 LVQaLr~e~~~~s~L~~fLl~ra~~s~~ia~~l~ 149 (184)
T PF00613_consen 116 LVQALRYEPYHDSPLARFLLRRALKSPRIAHQLF 149 (184)
T ss_dssp HHHHGGGSSSSS-HHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHheeccccccHHHHHHHHHHHhCHHHHHHHH
Confidence 8888875443334444444444444444443333
No 263
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=23.63 E-value=4.1e+02 Score=26.30 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=57.5
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc-ccccc-hhhhhhHHHHHHHhhCCCCc--hHHHHHHHHHHHhcch
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH-VVFED-VDLIQGCCCRAVELLRDHED--CVRCAAVRVVSEWGKM 219 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~-~~~~~-~~l~~~i~~~l~~lL~Ddd~--~VR~aAV~aLg~lg~~ 219 (939)
.++.+.+..+.+.+++++|.|-.-|+.-|..+..- |.... .-...++...+..++.+.+. .||..+.+.+..|+..
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 67778889999999999999999999988877553 32111 11233456677777876544 3999999999999986
Q ss_pred h
Q 002304 220 L 220 (939)
Q Consensus 220 ~ 220 (939)
+
T Consensus 113 f 113 (133)
T smart00288 113 F 113 (133)
T ss_pred H
Confidence 5
No 264
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=23.58 E-value=8.1e+02 Score=25.10 Aligned_cols=123 Identities=16% Similarity=0.112 Sum_probs=76.7
Q ss_pred HhhccCCCcHHHHHHHHHHHHhccccc-hh-hHH---HHHHHHHHHhcCC-CHHHHHHHHHHHhhhhhcccccchhhHHH
Q 002304 307 FVHGFEDEFYEVRKSACSSLGSLVILS-EK-FAG---EALNLLVDMLNDD-SVTVRLQALETMHIMVTCEHLNLEDKHMH 380 (939)
Q Consensus 307 LI~~LeDE~~eVR~aAaeALGkL~~~s-~~-fA~---~ALd~LvdmLnDe-~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~ 380 (939)
+...|.+...+-|..++.-++.....+ .+ |.. .=+..|+..++.. ...++..|+.+|.+|-
T Consensus 30 i~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~------------- 96 (165)
T PF08167_consen 30 INSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF------------- 96 (165)
T ss_pred HHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-------------
Confidence 445677777788888877776665443 33 322 2356667777664 5567888888888764
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhh
Q 002304 381 MFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 381 ~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
....+.....|+.+. |. +-.+++.+++.+++ +.....+..+|..+=++||...-|...++-.
T Consensus 97 ---~~~~~~p~l~Rei~t--------p~---l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~ 158 (165)
T PF08167_consen 97 ---DLIRGKPTLTREIAT--------PN---LPKFIQSLLQLLQD-SSCPETALDALATLLPHHPTTFRPFANKIES 158 (165)
T ss_pred ---HHhcCCCchHHHHhh--------cc---HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHCCccccchHHHHHH
Confidence 233444444665442 22 22356777776554 4556778888888888888777666555543
No 265
>PF14961 BROMI: Broad-minded protein
Probab=23.57 E-value=2.4e+02 Score=37.77 Aligned_cols=79 Identities=23% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHH
Q 002304 313 DEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSEL 392 (939)
Q Consensus 313 DE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~d 392 (939)
+.--+||.+|.+.||+.- +-|++++|.|.+ .-..|...|.|+++.
T Consensus 173 ~~P~evR~eAlq~Lc~~p-------------~SDVls~E~W~~----------------------L~~~L~~~LsDpD~~ 217 (1296)
T PF14961_consen 173 GQPKEVRLEALQILCSAP-------------PSDVLSCESWSV----------------------LRENLTDALSDPDPE 217 (1296)
T ss_pred CCchHHHHHHHHHHhcCC-------------hhhccccccHHH----------------------HHHHHHHHcCCCCHH
Q ss_pred HHHHHHHHHhhc-cCCchhHHHHHHHHHHHhhccC
Q 002304 393 VRCAARKILKLV-KTPKLEFFRLFIDGLLENLKIY 426 (939)
Q Consensus 393 VR~aA~~aLg~i-~l~~~~~l~~~l~~LL~~L~~~ 426 (939)
+..++-....+. ..+....-.-.-..|++.+..|
T Consensus 218 is~~~L~f~Ak~fssSpl~~trEiYtsL~~~l~~~ 252 (1296)
T PF14961_consen 218 ISDASLRFHAKMFSSSPLNMTREIYTSLANHLESY 252 (1296)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH
No 266
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=23.47 E-value=2.1e+03 Score=31.88 Aligned_cols=178 Identities=16% Similarity=0.148 Sum_probs=101.4
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcchhhh-hcccccccccchhHHHHHHH-hhcCCCHHHHHHHHHHHhcccCCcHHHHH
Q 002304 194 AVELLRDHEDCVRCAAVRVVSEWGKMLIA-CIDEKNRIDCSDVVFIQLCS-MIRDMRMEVRVEAFNALGKVGMISEIVLL 271 (939)
Q Consensus 194 l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~-~~~~~~~i~lvddaf~aLc~-aL~D~s~~VR~~AA~ALG~i~~vs~~~Ll 271 (939)
+...+.-+++++|..|+..+..+=.-... ++-....+.-+..++.+++. ++.|.++.+|.+....++ .+++.
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~ 559 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDA 559 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhh
Confidence 45667889999999996666544322111 00000001113344455554 568999999998888887 12222
Q ss_pred HHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHH
Q 002304 272 QTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVD 346 (939)
Q Consensus 272 qtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~Lvd 346 (939)
++.. +...-.+..++.|+..++|.++...+|.++..+|.+. ...+..+-+
T Consensus 560 ~laQ-------------------------~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~ 614 (2341)
T KOG0891|consen 560 QLAQ-------------------------PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTE 614 (2341)
T ss_pred hhcC-------------------------chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhch
Confidence 2111 1122235568899999999999999999998666542 233344444
Q ss_pred HhcCCCHHHHHHHHHHHh--hhhh---cccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 347 MLNDDSVTVRLQALETMH--IMVT---CEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 347 mLnDe~~~VRl~Aa~ALg--kI~~---~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
+.-+... |.++-.+.. .+.. ......-+..+..++..+.|..+.|-+++....+.+
T Consensus 615 l~~sg~~--r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL 675 (2341)
T KOG0891|consen 615 LEFSGMA--RTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGEL 675 (2341)
T ss_pred hhhcchH--HhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 4444444 333322221 1110 000001134667788899999998888887777764
No 267
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=23.03 E-value=8e+02 Score=24.84 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=58.2
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-ccc-c---cchhhHHHHHHH
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEH-L---NLEDKHMHMFLG 384 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~-i---~l~E~aL~~LL~ 384 (939)
.+..++|..=..-++.+.. .+.-+..|+..|...++..++.|-+.|+..|--+.. +|. + .-.++.++.++.
T Consensus 13 ~l~~~dw~~ileicD~In~----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 13 SNREEDWEAIQAFCEQINK----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred cCCCCCHHHHHHHHHHHHc----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 3567888776666666643 333457899999999999999999999877766653 231 1 112455666777
Q ss_pred hcCC------CCHHHHHHHHHHH
Q 002304 385 TLVD------NSELVRCAARKIL 401 (939)
Q Consensus 385 ~L~D------~~~dVR~aA~~aL 401 (939)
++.+ .++.||..+..++
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li 111 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELL 111 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHH
Confidence 6653 4677776665533
No 268
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=22.84 E-value=8.9e+02 Score=25.32 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHHhhc---cCccchHHHHHHHHHhhccc---ccchHHHHHH---HhhhcCCCCCCCC-CCCchhHHHH
Q 002304 408 KLEFFRLFIDGLLENLK---IYPQDEADVFSVLFFIGRSH---GNFAACIIKE---VCQEIEPDSDDKL-GFDNARVAAF 477 (939)
Q Consensus 408 ~~~~l~~~l~~LL~~L~---~~peDr~~I~~aL~~LG~~H---~~lv~~lv~~---Ll~~i~p~~~~e~-~~dd~~yiA~ 477 (939)
+....+.+..+|+.-+. ..++....+...|-.+-++| ..++-|+.+- |++. ..++.=+ +-+.+.+...
T Consensus 100 tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~--~~~~~~~~~~~~~~~~~L 177 (193)
T PF12612_consen 100 TESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS--GVFDSLPEDSDSPFLRKL 177 (193)
T ss_pred chhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC--cchhcccccccchHHHHH
Confidence 33344444445555443 33334555666666665443 3444444333 3433 1222111 1111567777
Q ss_pred HHHHhhccccC
Q 002304 478 LVLAISVPLSC 488 (939)
Q Consensus 478 Lili~~A~~s~ 488 (939)
+.++.++..+.
T Consensus 178 ~~~~~~e~~~s 188 (193)
T PF12612_consen 178 FDLVQKEHKKS 188 (193)
T ss_pred HHHHHHHHhhc
Confidence 77777776643
No 269
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=22.71 E-value=1.2e+02 Score=29.73 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=13.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 342 NLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 342 d~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
+.|+.+|.|++++||+.|+..+-.+.
T Consensus 50 ~aLl~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 50 DALLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHhC
Confidence 44555566666666666555555544
No 270
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=22.62 E-value=2.5e+02 Score=27.87 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=54.4
Q ss_pred CCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc-ccccc-hhhhhhHHHHHHHhhCCCCc--h--HHHHHHHHHHHh
Q 002304 143 NVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH-VVFED-VDLIQGCCCRAVELLRDHED--C--VRCAAVRVVSEW 216 (939)
Q Consensus 143 ~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~-~~~~~-~~l~~~i~~~l~~lL~Ddd~--~--VR~aAV~aLg~l 216 (939)
..++.+.+..|.+.+++++|.|-.-|+.-|..+..- |.... .-....+...+.+++.+... . ||..+++.+..|
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 356778889999999999999999998877766542 22111 11123355666666654322 2 999999999999
Q ss_pred cchh
Q 002304 217 GKML 220 (939)
Q Consensus 217 g~~~ 220 (939)
+..+
T Consensus 117 ~~~f 120 (140)
T PF00790_consen 117 AEAF 120 (140)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9865
No 271
>PRK04330 hypothetical protein; Provisional
Probab=22.56 E-value=6.2e+02 Score=24.13 Aligned_cols=72 Identities=24% Similarity=0.384 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhcCCCH--HHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchh
Q 002304 333 SEKFAGEALNLLVDMLNDDSV--TVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLE 410 (939)
Q Consensus 333 s~~fA~~ALd~LvdmLnDe~~--~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~ 410 (939)
..+..++|+..|-.+.+|..- .+|..|-++...+.+ ++..+.||.+-+.
T Consensus 7 ~e~~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~------------------e~~~~~vRaA~AI----------- 57 (88)
T PRK04330 7 NEEKIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLN------------------EEESPGVRAATAI----------- 57 (88)
T ss_pred hHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC------------------cCcchhHHHHHHH-----------
Q ss_pred HHHHHHHHHHHhhccCccc----hHHHHHHHHHh
Q 002304 411 FFRLFIDGLLENLKIYPQD----EADVFSVLFFI 440 (939)
Q Consensus 411 ~l~~~l~~LL~~L~~~peD----r~~I~~aL~~L 440 (939)
+.|+.+..+|-- |-.||.++.+|
T Consensus 58 -------s~LdeIs~DPNmP~h~RT~IW~ivS~L 84 (88)
T PRK04330 58 -------SILDEISNDPNMPLHTRTLIWNIVSQL 84 (88)
T ss_pred -------HHHHHhhcCCCCChHHHHHHHHHHHHH
No 272
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.55 E-value=1.2e+03 Score=26.62 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=86.7
Q ss_pred cccchhhHHHHhhhccCCchhHHHHHHHhhcCCchHHHHHHhhhccccCCC---------hhhHHHHHHhhhcCCCHHHH
Q 002304 95 SSYSPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVR---------PHLLFTVCLGLTKDPYPYVR 165 (939)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~L~~~L~~ll~D~Dp~VR 165 (939)
+..+|.|--|.+|...+...+-.+++...=|..+.-.|+.-.|..+.-... ....+.-++.++...+|.+|
T Consensus 71 ~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~ 150 (330)
T PF11707_consen 71 SLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELK 150 (330)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHH
Confidence 344567788888888788888888888887776665666555542211110 01244455667777788777
Q ss_pred HHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHH--hcchhhhhcccccccccc-hhHHHHHHH
Q 002304 166 EAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSE--WGKMLIACIDEKNRIDCS-DVVFIQLCS 242 (939)
Q Consensus 166 raAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~--lg~~~~~~~~~~~~i~lv-ddaf~aLc~ 242 (939)
+.-+. +.+. +..+.+-+.+|.+++=...++.|.. +.+...+ ...+..+. +.++.+|..
T Consensus 151 ~~lL~------~~~~----------~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~---r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 151 RDLLS------QKKL----------MSALFKGLRKDPPETVILILETLKDKVLKDSSVS---RSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHH------cCch----------HHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCC---hhhhhhhcCHHHHHHHHH
Confidence 76665 2221 3445555655555444445666552 2221111 01122322 446677888
Q ss_pred hhcCCCH----HHHHHHHHHHhcccC
Q 002304 243 MIRDMRM----EVRVEAFNALGKVGM 264 (939)
Q Consensus 243 aL~D~s~----~VR~~AA~ALG~i~~ 264 (939)
.-+..+. .||..|-+-|-.+..
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhc
Confidence 6666666 788888777777654
No 273
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=22.53 E-value=2.2e+02 Score=37.98 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=64.0
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCC----CCchHHHHHHHHHHHhcch
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRD----HEDCVRCAAVRVVSEWGKM 219 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~D----dd~~VR~aAV~aLg~lg~~ 219 (939)
.++...+..+.. +=||..||+.|+..++.+.++.. -+.+|+++++|+= +.+.||..=-++|+.+-
T Consensus 888 l~Pl~ALelL~~--kfPDqeVR~~AVqwi~~ls~DeL-------~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~-- 956 (1639)
T KOG0905|consen 888 LRPLIALELLLP--KFPDQEVRAHAVQWIARLSNDEL-------LDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQ-- 956 (1639)
T ss_pred cCHHHHHHhhcc--cCCcHHHHHHHHHHHHhcCcHHH-------HHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchH--
Confidence 456665655554 34788999999999998887654 2467889988863 46777776666655422
Q ss_pred hhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc
Q 002304 220 LIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 220 ~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i 262 (939)
.....+=-|.++++|.-..+|+ -..|+.+
T Consensus 957 ------------~ah~lYWlLk~~l~d~qfs~rY--q~ll~aL 985 (1639)
T KOG0905|consen 957 ------------FAHELYWLLKDALDDSQFSLRY--QNLLAAL 985 (1639)
T ss_pred ------------HHHHHHHHHhhccccceeehHH--HHHHHHH
Confidence 2234445688899998888888 3444444
No 274
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.45 E-value=2.7e+02 Score=38.96 Aligned_cols=121 Identities=17% Similarity=0.062 Sum_probs=86.5
Q ss_pred HHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc-c-cccchhhhhhHHHHHHHhhCCCCchHHHHHHH
Q 002304 134 WLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH-V-VFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR 211 (939)
Q Consensus 134 ~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~-~-~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~ 211 (939)
.+...|...|.+-++.+..+.++.+--+..+|+-+...+...... + ..-......+++..+...+.|..-.||.+|.+
T Consensus 120 ~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~r 199 (2067)
T KOG1822|consen 120 LYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAAR 199 (2067)
T ss_pred HHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHH
Confidence 344456677788999999999999999999999888777655432 1 10112345668888899999999999999999
Q ss_pred HHHHhcchhhhhcccccccccchhHHHHHH----HhhcCCCHHHHHHHHHHHhcc
Q 002304 212 VVSEWGKMLIACIDEKNRIDCSDVVFIQLC----SMIRDMRMEVRVEAFNALGKV 262 (939)
Q Consensus 212 aLg~lg~~~~~~~~~~~~i~lvddaf~aLc----~aL~D~s~~VR~~AA~ALG~i 262 (939)
.+..+...-.+. +-...++.++ ..+.+.+|.||.+-|+.+|.+
T Consensus 200 c~~a~s~~~~~~--------~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~L 246 (2067)
T KOG1822|consen 200 CLKAFSNLGGPG--------LGTSELETLASYCFKGIEISNSEVRCAVAEFLGSL 246 (2067)
T ss_pred HHHHHHhhcCcc--------ccchhhhhhcceeeeeeccchHHHHHHHHHHHHHH
Confidence 887776532111 1012233333 478899999999999999987
No 275
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=22.24 E-value=4.8e+02 Score=26.31 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=56.9
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc-cccc-chhhhhhHHHHHHHhhC-CCCchHHHHHHHHHHHhcchh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH-VVFE-DVDLIQGCCCRAVELLR-DHEDCVRCAAVRVVSEWGKML 220 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~-~~~~-~~~l~~~i~~~l~~lL~-Ddd~~VR~aAV~aLg~lg~~~ 220 (939)
.++.+.+..|.+.+++++|.|-.-|+.-|..+..- |... ..-...++...+..++. ..++.||..+++.+..|+..+
T Consensus 37 ~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 37 VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 46778889999999999999999999877666542 3211 11223445666777775 678899999999999999754
No 276
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=4.5e+02 Score=36.27 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=77.9
Q ss_pred CCCcHHHHHHHHHHHHhccccchhhH------HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHh
Q 002304 312 EDEFYEVRKSACSSLGSLVILSEKFA------GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGT 385 (939)
Q Consensus 312 eDE~~eVR~aAaeALGkL~~~s~~fA------~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~ 385 (939)
.++.|.||.+++.=+....= +..|. .+.--.+...++|+.-+||..|+.+|..+--.+...+..+--+.....
T Consensus 1537 ~~~tw~vr~avl~fl~~~vy-~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~ 1615 (1710)
T KOG1851|consen 1537 DSSTWRVRSAVLKFLQTVVY-SNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNI 1615 (1710)
T ss_pred ccchHHHHHHHHHHHHHHHH-HHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccchHhhhhhhhh
Confidence 47899999997776644321 11111 345566788999999999999999998876433333322111222222
Q ss_pred c--CCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhh
Q 002304 386 L--VDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIG 441 (939)
Q Consensus 386 L--~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG 441 (939)
+ .-.+...++++..+||.+-+.-.-.+-.-+...+.+|..++.+...|-.+.++.-
T Consensus 1616 ~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~~~i~~tvkktv 1673 (1710)
T KOG1851|consen 1616 LQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARESAAIKQTVKKTV 1673 (1710)
T ss_pred hhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 2 1233344566667777765544444445677888888888877665555555543
No 277
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.93 E-value=3.5e+02 Score=32.95 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=58.6
Q ss_pred chhhhhhHHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHhhhhcccCcchHHHHHHHHHHHHHHHHHHHhh
Q 002304 595 RCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQ 674 (939)
Q Consensus 595 ~~~~~~~~~~~~~l~~il~~v~~~~~~~~~~~~~~~~~~L~~~~~eL~~l~~~~~~~~g~~~f~~~Yl~~~~ll~k~~~~ 674 (939)
+||+++......-|+.|.++|..+....-+. +.+|++ +|+-+.+|.. |.++++.|+|--
T Consensus 344 K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~----~~KI~~-~k~r~~~Ls~----------------RiLRv~ikqeil 402 (508)
T KOG3091|consen 344 KVQDQEVKQHRIRINAIGERVTELQKHHADA----VAKIEE-AKNRHVELSH----------------RILRVMIKQEIL 402 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHH-HHHHHHHHHH----------------HHHHHHHHHHHH
Confidence 6999999999999999999999998443333 778877 5554444432 566666666654
Q ss_pred hccCCCccccccchHHHHHHHHHHHHHhhhhh
Q 002304 675 FVPAKNIHHYEQGELEFLLGKLDRSLRELRCR 706 (939)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~l~kL~~~~~~l~~~ 706 (939)
.- .-+...+++- .+=.|||.-+.+|.-=
T Consensus 403 r~---~G~~L~~~EE-~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 403 RK---RGYALTPDEE-ELRAKLDTLLAQLNAP 430 (508)
T ss_pred hc---cCCcCCccHH-HHHHHHHHHHHHhcCh
Confidence 42 1234444443 3347888888887654
No 278
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.64 E-value=2.6e+02 Score=31.39 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=53.2
Q ss_pred HHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhh
Q 002304 119 FFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELL 198 (939)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL 198 (939)
++.-+|...+ ...-.|+..++ ..+......+..+++.+|+.+...|+..|..+...+.........+.++.+.+.|
T Consensus 80 li~dll~~~~-~~~~~~~~~~~---~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L 155 (312)
T PF03224_consen 80 LIDDLLSDDP-SRVELFLELAK---QDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWL 155 (312)
T ss_dssp HHHHHHH-SS-SSHHHHHHHHH----TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCH-HHHHHHHHhcc---cccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHH
Confidence 3444566665 44445555555 3344477888889999999999999999999865443112221234455555555
Q ss_pred CC----CCchHHHHHHHHHHHhcc
Q 002304 199 RD----HEDCVRCAAVRVVSEWGK 218 (939)
Q Consensus 199 ~D----dd~~VR~aAV~aLg~lg~ 218 (939)
++ ++..+...|+.+|+.+-.
T Consensus 156 ~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 156 SSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp H-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHhhcCCCcchHHHHHHHHHHHhC
Confidence 43 555666777777776543
No 279
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.64 E-value=9.6e+02 Score=31.25 Aligned_cols=84 Identities=11% Similarity=0.177 Sum_probs=51.9
Q ss_pred hHHHHHHHHHh----hcccccchHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHhhccccCcCCCCCCChhhhhhhHh
Q 002304 430 EADVFSVLFFI----GRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVT 505 (939)
Q Consensus 430 r~~I~~aL~~L----G~~H~~lv~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lili~~A~~s~~~~~~~ip~~~fsh~~~ 505 (939)
|-.+..+|.++ |...+.+-..+.+=+--.++|-...-..+..+.+.--+..+-|+..-.|+ +- .+|+|.+|
T Consensus 632 r~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~----ll-~L~p~l~~ 706 (978)
T KOG1993|consen 632 RCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPE----LL-LLFPHLLY 706 (978)
T ss_pred HHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHH----HH-HHHHHHHH
Confidence 33444444443 44433444444444434457766666777777888888888888652322 22 36788888
Q ss_pred hhchhhhhhhhhh
Q 002304 506 LLGRISYALSDVM 518 (939)
Q Consensus 506 ~~~k~y~~l~D~m 518 (939)
...++..-|+-++
T Consensus 707 ~iE~ste~L~t~l 719 (978)
T KOG1993|consen 707 IIEQSTENLPTVL 719 (978)
T ss_pred HHHhhhhhHHHHH
Confidence 8888888887655
No 280
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=20.63 E-value=9.7e+02 Score=25.15 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 002304 339 EALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDG 418 (939)
Q Consensus 339 ~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~ 418 (939)
++++.++...+=.++.=...+..-|.+-... -.+++++-|-....| +.||+-|...|..... +.+...+..
T Consensus 39 ~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i----~~~~aLeLL~~~f~d--~~VR~yAV~~L~~~sd---~eL~~yL~Q 109 (171)
T cd00872 39 QALPKLLLSVKWNKRDDVAQMYQLLKRWPKL----KPEQALELLDCNFPD--EHVREFAVRCLEKLSD---DELLQYLLQ 109 (171)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHCCCCC----CHHHHHHHCCCcCCC--HHHHHHHHHHHHhCCH---HHHHHHHHH
Confidence 6888888888888876666777777765431 134566666655555 8899999888887553 445667888
Q ss_pred HHHhhccCc
Q 002304 419 LLENLKIYP 427 (939)
Q Consensus 419 LL~~L~~~p 427 (939)
|..+|+-.+
T Consensus 110 LVQaLKyE~ 118 (171)
T cd00872 110 LVQVLKYEP 118 (171)
T ss_pred HHHHHHccc
Confidence 888888655
No 281
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.12 E-value=7.2e+02 Score=24.62 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=55.4
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-ccc-c---cchhhHHHHHHH
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEH-L---NLEDKHMHMFLG 384 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~-i---~l~E~aL~~LL~ 384 (939)
.+.+++|+.=..-++.+.. .+.-+..|+..|...++..++.|-+.|+..|.-+.. +|. + ...++-++.|..
T Consensus 12 ~l~~~dw~~~l~icD~i~~----~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 12 SLLEEDWELILEICDLINS----TPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred CCCCcCHHHHHHHHHHHhC----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH
Confidence 4567888776666666643 233357899999999999999999999998887763 221 1 012345555666
Q ss_pred hcCCCCH--HHHHHHHH
Q 002304 385 TLVDNSE--LVRCAARK 399 (939)
Q Consensus 385 ~L~D~~~--dVR~aA~~ 399 (939)
++.+... .||+.+..
T Consensus 88 l~~~~~~~~~Vk~kil~ 104 (133)
T smart00288 88 LIKPKYPLPLVKKRILE 104 (133)
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 6555432 25554444
Done!