Query 002304
Match_columns 939
No_of_seqs 197 out of 382
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oyz_A Hypothetical protein YI 99.9 2.9E-23 9.9E-28 217.4 22.6 253 149-482 24-277 (280)
2 3ltj_A Alpharep-4; protein eng 99.9 1.9E-22 6.4E-27 201.3 20.8 189 143-405 9-197 (201)
3 3ltm_A Alpha-REP4; protein eng 99.9 2.1E-22 7.1E-27 202.4 20.1 190 144-407 15-204 (211)
4 1oyz_A Hypothetical protein YI 99.9 4.1E-21 1.4E-25 201.1 24.5 225 146-440 52-277 (280)
5 3ltm_A Alpha-REP4; protein eng 99.8 3.5E-20 1.2E-24 186.2 19.2 186 191-445 21-206 (211)
6 3ltj_A Alpharep-4; protein eng 99.8 6.5E-20 2.2E-24 182.9 19.8 186 188-442 13-198 (201)
7 1b3u_A Protein (protein phosph 99.8 2.9E-18 9.9E-23 194.2 26.5 364 38-442 44-431 (588)
8 1b3u_A Protein (protein phosph 99.7 1.9E-16 6.4E-21 179.4 23.9 291 148-443 242-549 (588)
9 2jdq_A Importin alpha-1 subuni 99.7 8.3E-16 2.8E-20 169.0 24.0 268 147-443 106-391 (450)
10 4hxt_A De novo protein OR329; 99.7 5.5E-15 1.9E-19 149.5 23.8 227 150-405 4-240 (252)
11 2jdq_A Importin alpha-1 subuni 99.7 2.9E-15 9.9E-20 164.7 23.5 270 150-448 22-311 (450)
12 2vgl_B AP-2 complex subunit be 99.7 7.4E-14 2.5E-18 163.2 33.2 318 124-458 95-435 (591)
13 4fdd_A Transportin-1; heat rep 99.6 1.9E-14 6.5E-19 173.5 28.1 282 146-458 172-491 (852)
14 4db8_A Armadillo-repeat protei 99.6 3.4E-15 1.2E-19 152.7 17.4 227 148-404 12-249 (252)
15 1w63_A Adapter-related protein 99.6 3.9E-15 1.3E-19 175.3 20.3 291 150-458 109-467 (618)
16 2vgl_B AP-2 complex subunit be 99.6 3.5E-15 1.2E-19 174.4 17.6 262 145-450 46-319 (591)
17 4b8j_A Importin subunit alpha- 99.6 3.3E-14 1.1E-18 161.8 23.6 271 148-447 74-363 (528)
18 4b8j_A Importin subunit alpha- 99.6 1.1E-13 3.7E-18 157.5 27.4 265 148-442 160-443 (528)
19 1wa5_B Importin alpha subunit; 99.6 4.1E-14 1.4E-18 161.5 23.6 266 148-442 173-457 (530)
20 1wa5_B Importin alpha subunit; 99.6 3.2E-14 1.1E-18 162.5 22.6 270 149-448 88-376 (530)
21 4fdd_A Transportin-1; heat rep 99.6 6E-14 2E-18 169.2 25.4 283 146-459 126-451 (852)
22 4hxt_A De novo protein OR329; 99.6 1.1E-13 3.8E-18 139.9 22.7 227 191-446 4-245 (252)
23 1ibr_B P95, importin beta-1 su 99.6 1E-13 3.6E-18 152.2 20.8 282 147-458 127-459 (462)
24 4db6_A Armadillo repeat protei 99.5 7.1E-14 2.4E-18 139.3 16.6 196 143-367 7-208 (210)
25 1te4_A Conserved protein MTH18 99.5 1.4E-15 4.8E-20 143.7 3.1 118 191-366 14-131 (131)
26 4db6_A Armadillo repeat protei 99.5 4.2E-13 1.4E-17 133.7 19.1 188 189-405 12-208 (210)
27 4db8_A Armadillo-repeat protei 99.5 4.3E-13 1.5E-17 137.1 19.5 224 190-442 13-251 (252)
28 1qgr_A Protein (importin beta 99.5 4.2E-13 1.4E-17 159.7 22.2 279 148-457 217-556 (876)
29 1te4_A Conserved protein MTH18 99.5 9.8E-15 3.3E-19 138.0 5.1 120 235-404 12-131 (131)
30 2bpt_A Importin beta-1 subunit 99.5 1.3E-12 4.5E-17 155.1 23.4 270 147-447 223-534 (861)
31 1ibr_B P95, importin beta-1 su 99.5 1E-11 3.4E-16 136.4 28.2 249 147-405 171-436 (462)
32 1jdh_A Beta-catenin; beta-cate 99.5 2E-12 7E-17 145.3 22.5 292 147-446 16-343 (529)
33 1qgr_A Protein (importin beta 99.5 3.2E-12 1.1E-16 152.1 25.2 310 147-459 127-514 (876)
34 2bpt_A Importin beta-1 subunit 99.4 8.6E-12 3E-16 148.1 26.2 285 147-459 133-463 (861)
35 1lrv_A LRV, leucine-rich repea 99.4 1.1E-14 3.9E-19 154.2 0.5 165 153-402 55-219 (244)
36 3ul1_B Importin subunit alpha- 99.4 9E-12 3.1E-16 143.0 21.9 288 150-442 59-387 (510)
37 4ady_A RPN2, 26S proteasome re 99.4 5.9E-12 2E-16 154.0 20.4 115 303-424 578-698 (963)
38 4ady_A RPN2, 26S proteasome re 99.4 1.4E-11 4.8E-16 150.8 23.3 305 147-486 391-721 (963)
39 2z6h_A Catenin beta-1, beta-ca 99.4 1.2E-11 4E-16 145.4 21.3 268 148-446 14-296 (644)
40 2z6g_A B-catenin; FULL-length, 99.4 1E-11 3.4E-16 150.3 21.0 294 147-446 149-476 (780)
41 3tpo_A Importin subunit alpha- 99.4 2E-11 6.8E-16 140.4 22.4 264 148-440 162-447 (529)
42 3ul1_B Importin subunit alpha- 99.4 3.4E-10 1.1E-14 130.0 32.4 226 149-403 186-427 (510)
43 1jdh_A Beta-catenin; beta-cate 99.4 3.2E-11 1.1E-15 135.5 22.7 291 148-443 59-386 (529)
44 2qk2_A LP04448P; mini spindles 99.4 3.7E-11 1.2E-15 124.0 20.8 178 152-368 19-205 (242)
45 1u6g_C TIP120 protein, CAND1; 99.4 1.2E-11 4.2E-16 154.8 20.3 280 150-458 8-304 (1230)
46 3tpo_A Importin subunit alpha- 99.3 9.3E-11 3.2E-15 134.9 25.7 226 149-403 205-446 (529)
47 1w63_A Adapter-related protein 99.3 2.4E-11 8.2E-16 143.2 21.2 266 147-459 69-359 (618)
48 1lrv_A LRV, leucine-rich repea 99.3 7.3E-13 2.5E-17 140.4 6.7 195 114-403 42-243 (244)
49 2z6h_A Catenin beta-1, beta-ca 99.3 1.1E-10 3.6E-15 137.3 24.3 267 148-445 56-339 (644)
50 1u6g_C TIP120 protein, CAND1; 99.3 7.7E-10 2.6E-14 138.6 29.6 283 148-463 374-701 (1230)
51 2z6g_A B-catenin; FULL-length, 99.3 9.8E-11 3.4E-15 141.6 20.8 284 150-444 117-430 (780)
52 2vgl_A Adaptor protein complex 99.2 1.4E-10 4.7E-15 137.3 19.5 312 114-457 91-448 (621)
53 3now_A UNC-45 protein, SD10334 99.2 1.3E-10 4.5E-15 141.2 19.7 237 148-411 495-742 (810)
54 3now_A UNC-45 protein, SD10334 99.2 2.3E-10 8E-15 139.1 20.9 271 146-446 288-614 (810)
55 1xqr_A HSPBP1 protein; armadil 99.2 2.1E-10 7.2E-15 124.4 15.4 193 144-368 24-238 (296)
56 2qk2_A LP04448P; mini spindles 99.2 2.7E-10 9.3E-15 117.5 15.4 181 192-405 18-204 (242)
57 3nmw_A APC variant protein; AR 99.1 1.3E-09 4.6E-14 120.8 17.9 217 160-405 96-333 (354)
58 3nmz_A APC variant protein; pr 99.1 2.3E-09 7.8E-14 123.0 18.1 304 100-446 102-454 (458)
59 3nmw_A APC variant protein; AR 99.0 5.9E-09 2E-13 115.7 17.3 255 163-447 47-339 (354)
60 1xm9_A Plakophilin 1; armadill 99.0 7.3E-09 2.5E-13 117.5 18.2 268 147-446 43-410 (457)
61 3nmz_A APC variant protein; pr 99.0 1.3E-08 4.3E-13 116.9 20.2 294 118-451 51-417 (458)
62 3l6x_A Catenin delta-1; cateni 98.9 5.3E-08 1.8E-12 114.8 23.8 296 146-448 88-481 (584)
63 2vgl_A Adaptor protein complex 98.9 2.5E-08 8.4E-13 118.1 20.6 268 147-458 73-376 (621)
64 1xqr_A HSPBP1 protein; armadil 98.9 2.1E-08 7.2E-13 108.8 17.6 187 191-407 30-239 (296)
65 2qk1_A Protein STU2; STU2P, XM 98.9 1.6E-08 5.4E-13 106.6 15.9 198 153-386 21-234 (249)
66 1xm9_A Plakophilin 1; armadill 98.9 4.5E-08 1.5E-12 111.1 20.4 260 150-442 4-360 (457)
67 3l9t_A Putative uncharacterize 98.9 2.7E-08 9.3E-13 104.9 15.3 165 188-405 70-239 (240)
68 3opb_A SWI5-dependent HO expre 98.8 4E-08 1.4E-12 118.5 18.0 234 145-404 454-726 (778)
69 3tjz_B Coatomer subunit gamma; 98.8 1.8E-07 6.3E-12 104.2 20.2 276 133-458 52-332 (355)
70 2db0_A 253AA long hypothetical 98.7 6.6E-07 2.2E-11 91.3 20.4 100 304-405 146-245 (253)
71 2db0_A 253AA long hypothetical 98.7 1.1E-06 3.9E-11 89.6 21.2 214 187-441 30-245 (253)
72 2qk1_A Protein STU2; STU2P, XM 98.7 1.9E-07 6.4E-12 98.5 15.8 182 194-404 21-218 (249)
73 3l6x_A Catenin delta-1; cateni 98.7 8.1E-07 2.8E-11 104.8 22.0 270 141-442 42-384 (584)
74 3b2a_A TON_1937, putative unch 98.7 2.5E-07 8.4E-12 97.5 15.3 223 132-400 17-255 (265)
75 3opb_A SWI5-dependent HO expre 98.5 2.9E-06 1E-10 102.5 21.4 275 144-444 330-685 (778)
76 3tjz_B Coatomer subunit gamma; 98.5 1.2E-05 4.2E-10 89.5 23.7 197 144-388 22-220 (355)
77 3l9t_A Putative uncharacterize 98.4 1.8E-06 6.3E-11 91.1 12.3 143 304-455 73-220 (240)
78 3tt9_A Plakophilin-2; cell adh 98.4 5.5E-06 1.9E-10 87.3 15.4 149 190-368 9-180 (233)
79 3b2a_A TON_1937, putative unch 98.1 4.3E-05 1.5E-09 80.7 15.6 179 190-404 34-216 (265)
80 3tt9_A Plakophilin-2; cell adh 98.1 1.8E-05 6.1E-10 83.4 12.8 146 236-406 9-180 (233)
81 4ffb_C Protein STU2; tubulin f 97.9 4.1E-05 1.4E-09 80.9 12.0 190 194-405 14-211 (278)
82 1wa5_C Importin alpha RE-expor 97.9 0.00093 3.2E-08 82.3 24.4 220 202-449 374-636 (960)
83 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00055 1.9E-08 79.8 19.2 261 144-457 171-447 (800)
84 1wa5_C Importin alpha RE-expor 97.7 0.0017 5.9E-08 79.9 23.2 171 163-367 376-581 (960)
85 2iw3_A Elongation factor 3A; a 97.6 0.0025 8.6E-08 79.3 21.2 254 147-440 53-322 (986)
86 2x19_B Importin-13; nuclear tr 97.6 0.007 2.4E-07 73.8 24.8 202 164-403 423-643 (963)
87 2x1g_F Cadmus; transport prote 97.6 0.0014 4.8E-08 80.3 18.5 173 160-367 476-662 (971)
88 4ffb_C Protein STU2; tubulin f 97.4 0.0037 1.3E-07 65.9 16.7 216 153-405 14-245 (278)
89 3oc3_A Helicase MOT1, MOT1; re 97.4 0.0013 4.4E-08 76.8 13.5 188 229-440 168-363 (800)
90 2of3_A ZYG-9; multifunctional 97.3 0.0048 1.6E-07 66.3 16.3 182 192-403 49-233 (266)
91 2x19_B Importin-13; nuclear tr 97.3 0.0069 2.3E-07 73.9 19.4 211 158-403 459-711 (963)
92 1lsh_A Lipovitellin (LV-1N, LV 97.2 0.012 4.2E-07 73.9 21.3 242 145-444 324-578 (1056)
93 2x1g_F Cadmus; transport prote 97.1 0.025 8.7E-07 69.2 22.7 287 149-449 506-821 (971)
94 2iw3_A Elongation factor 3A; a 97.0 0.01 3.6E-07 73.9 18.1 209 162-408 28-243 (986)
95 2of3_A ZYG-9; multifunctional 97.0 0.0043 1.5E-07 66.7 12.3 176 154-367 52-235 (266)
96 1lsh_A Lipovitellin (LV-1N, LV 97.0 0.052 1.8E-06 68.2 23.6 219 130-402 340-572 (1056)
97 3m1i_C Exportin-1; heat repeat 96.7 0.05 1.7E-06 67.7 20.8 132 313-444 464-620 (1049)
98 4gmo_A Putative uncharacterize 96.5 0.0029 1E-07 75.6 7.3 210 147-366 34-256 (684)
99 3u0r_A Apoptosis inhibitor 5; 96.4 0.47 1.6E-05 54.8 23.9 212 234-486 28-249 (507)
100 3ibv_A Exportin-T; karyopherin 96.4 0.12 4.2E-06 64.4 20.9 277 159-457 454-783 (980)
101 4hat_C Exportin-1; heat repeat 96.3 0.063 2.2E-06 67.4 18.0 155 238-418 454-632 (1023)
102 3m1i_C Exportin-1; heat repeat 96.2 0.32 1.1E-05 60.5 23.5 222 149-404 345-616 (1049)
103 3ibv_A Exportin-T; karyopherin 96.0 0.17 5.8E-06 63.1 19.7 291 147-441 232-627 (980)
104 4hat_C Exportin-1; heat repeat 96.0 0.046 1.6E-06 68.6 14.5 146 189-368 451-618 (1023)
105 3u0r_A Apoptosis inhibitor 5; 96.0 0.3 1E-05 56.4 19.6 94 307-404 34-127 (507)
106 3grl_A General vesicular trans 95.7 0.17 5.7E-06 60.5 16.5 215 146-387 19-264 (651)
107 4gmo_A Putative uncharacterize 95.4 0.062 2.1E-06 64.2 11.7 89 236-350 35-130 (684)
108 3grl_A General vesicular trans 95.2 0.24 8.2E-06 59.1 15.7 164 232-425 18-219 (651)
109 3a6p_A Exportin-5; exportin-5, 95.1 1 3.6E-05 57.2 22.3 232 160-423 108-401 (1204)
110 3o2t_A Symplekin; heat repeat, 92.8 6.2 0.00021 44.4 20.1 244 164-444 41-323 (386)
111 2b6c_A Hypothetical protein EF 90.6 1.6 5.4E-05 45.0 11.4 136 307-452 59-198 (220)
112 3jxy_A Alkylpurine DNA glycosy 90.3 1.1 3.8E-05 46.5 10.0 134 310-453 69-206 (232)
113 3gs3_A Symplekin, LD45768P; he 89.5 17 0.0006 38.5 18.7 101 303-403 54-170 (257)
114 2b6c_A Hypothetical protein EF 89.3 12 0.00041 38.4 16.7 155 242-442 62-217 (220)
115 3jxy_A Alkylpurine DNA glycosy 88.5 7.9 0.00027 40.0 14.9 24 193-216 65-88 (232)
116 1vsy_5 Proteasome activator BL 86.4 3.2 0.00011 52.1 12.2 232 130-401 115-360 (997)
117 3gs3_A Symplekin, LD45768P; he 85.0 15 0.00053 38.9 15.0 113 317-441 30-146 (257)
118 1vsy_5 Proteasome activator BL 83.9 1.2 4.2E-05 55.7 6.9 104 303-407 761-875 (997)
119 3o2t_A Symplekin; heat repeat, 82.1 6 0.00021 44.5 10.9 190 147-346 62-271 (386)
120 1ho8_A Vacuolar ATP synthase s 80.3 2.4 8.4E-05 48.9 7.0 93 123-217 370-475 (480)
121 3gjx_A Exportin-1; transport, 80.3 16 0.00056 46.2 15.0 94 246-368 490-595 (1073)
122 3a6p_A Exportin-5; exportin-5, 79.9 38 0.0013 43.2 18.3 104 149-262 13-123 (1204)
123 3gjx_A Exportin-1; transport, 70.6 11 0.00039 47.6 9.9 132 314-445 491-647 (1073)
124 1x5b_A Signal transducing adap 52.9 1E+02 0.0035 30.3 11.3 84 311-399 28-118 (163)
125 1t06_A Hypothetical protein; s 47.1 49 0.0017 34.3 8.2 67 340-406 109-180 (235)
126 1vdy_A Hypothetical protein (R 43.9 42 0.0014 32.7 6.6 62 310-371 19-81 (140)
127 1t06_A Hypothetical protein; s 40.7 55 0.0019 33.8 7.4 69 148-218 108-180 (235)
128 3ldz_A STAM-1, signal transduc 34.2 1.2E+02 0.0042 28.9 8.2 86 310-399 17-107 (140)
129 3dad_A FH1/FH2 domain-containi 32.3 1.2E+02 0.0042 33.5 8.7 97 304-401 120-226 (339)
130 3ut4_A CTHE_2751, putative unc 29.2 1.4E+02 0.0049 28.8 7.6 63 321-394 16-78 (134)
131 1x5b_A Signal transducing adap 24.2 2E+02 0.007 28.1 8.0 77 144-220 48-127 (163)
132 1mhq_A ADP-ribosylation factor 22.6 5.2E+02 0.018 24.8 11.8 86 310-399 13-109 (148)
133 3g2s_A C-terminal fragment of 22.0 5.4E+02 0.018 24.8 11.6 89 310-402 23-122 (149)
134 3mkr_A Coatomer subunit epsilo 21.8 6.5E+02 0.022 25.6 20.4 175 234-461 82-266 (291)
135 3zyq_A Hepatocyte growth facto 21.6 5.3E+02 0.018 26.4 10.9 86 310-399 20-111 (226)
136 3ldz_A STAM-1, signal transduc 20.5 2.9E+02 0.0099 26.3 8.0 77 144-220 38-116 (140)
No 1
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.91 E-value=2.9e-23 Score=217.41 Aligned_cols=253 Identities=17% Similarity=0.111 Sum_probs=195.2
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
.+..+.+.++|+++.||..|+.+|++++.+. ..+.+.++|+|+++.||..|+.+||.++...
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~----------~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-------- 85 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQD----------AVRLAIEFCSDKNYIRRDIGAFILGQIKICK-------- 85 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHH----------HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--------
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCch----------HHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--------
Confidence 4577788899999999999999999987543 3678899999999999999999999998521
Q ss_pred ccccchhHHHHHH-HhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHH
Q 002304 229 RIDCSDVVFIQLC-SMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTF 307 (939)
Q Consensus 229 ~i~lvddaf~aLc-~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaL 307 (939)
..+...+..|. .+++|+++.||..|+++||+++...+. ....+++.|
T Consensus 86 --~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~------------------------------~~~~~~~~L 133 (280)
T 1oyz_A 86 --KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI------------------------------YSPKIVEQS 133 (280)
T ss_dssp --TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG------------------------------GHHHHHHHH
T ss_pred --ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc------------------------------ccHHHHHHH
Confidence 11123334444 357999999999999999998631100 023467789
Q ss_pred hhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcC
Q 002304 308 VHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLV 387 (939)
Q Consensus 308 I~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~ 387 (939)
+..|.|+++.||.+|+.+||+++.. .+++.|+.+++|+++.||..|+.+||+++.. .++.++.++..|+
T Consensus 134 ~~~l~d~~~~vR~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~~~L~~~l~ 202 (280)
T 1oyz_A 134 QITAFDKSTNVRRATAFAISVINDK------ATIPLLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDCFVEMLQ 202 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHTT
T ss_pred HHHhhCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----cHHHHHHHHHHhc
Confidence 9999999999999999999999862 4899999999999999999999999999732 2568999999999
Q ss_pred CCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCCC
Q 002304 388 DNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKL 467 (939)
Q Consensus 388 D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~ 467 (939)
|++++||..+..+|+.++.+. ++..|+..++. ++.|..+.++|+++|. +..+ +.+.++++. +
T Consensus 203 d~~~~vR~~A~~aL~~~~~~~------~~~~L~~~l~d-~~vr~~a~~aL~~i~~--~~~~-~~L~~~l~~-~------- 264 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKDKR------VLSVLCDELKK-NTVYDDIIEAAGELGD--KTLL-PVLDTMLYK-F------- 264 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTCGG------GHHHHHHHHTS-SSCCHHHHHHHHHHCC--GGGH-HHHHHHHTT-S-------
T ss_pred CCCHHHHHHHHHHHHHhCCHh------hHHHHHHHhcC-ccHHHHHHHHHHhcCc--hhhh-HHHHHHHhc-C-------
Confidence 999999999999999998543 35566666554 5679999999999997 3444 333344432 1
Q ss_pred CCCchhHHHHHHHHh
Q 002304 468 GFDNARVAAFLVLAI 482 (939)
Q Consensus 468 ~~dd~~yiA~Lili~ 482 (939)
+|+.|+-..+-.+
T Consensus 265 --~~~~~~~~~~~~l 277 (280)
T 1oyz_A 265 --DDNEIITSAIDKL 277 (280)
T ss_dssp --SCCHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHh
Confidence 3566776655544
No 2
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.90 E-value=1.9e-22 Score=201.28 Aligned_cols=189 Identities=22% Similarity=0.210 Sum_probs=169.2
Q ss_pred CCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhh
Q 002304 143 NVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 143 ~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~ 222 (939)
..........+.++++|+|+.||..|+.+|+.+++... .+.+.++|+|+++.||..|+.+|+.++.
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~----------~~~L~~~l~~~~~~vr~~a~~~L~~~~~---- 74 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA----------VEPLIKALKDEDAWVRRAAADALGQIGD---- 74 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG----------HHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhH----------HHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 34566778889999999999999999999999886443 5778999999999999999999999886
Q ss_pred hcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhc
Q 002304 223 CIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASA 302 (939)
Q Consensus 223 ~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~ 302 (939)
.+++..|..+++|+++.||..|+++||+++. ..
T Consensus 75 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------------------------------~~ 107 (201)
T 3ltj_A 75 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------------------------------ER 107 (201)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------------------------GG
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------------------------HH
Confidence 3467889999999999999999999999873 34
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHH
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMF 382 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~L 382 (939)
+.+.++.+|.|+++.||.+|+.+||+++.. .+++.|..+++|+++.||..|+.+|++++. ++.++.|
T Consensus 108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------~~~~~~L 174 (201)
T 3ltj_A 108 AVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAM 174 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHH
Confidence 667888899999999999999999999863 588999999999999999999999999984 5689999
Q ss_pred HHhcCCCCHHHHHHHHHHHhhcc
Q 002304 383 LGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 383 L~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
..+|+|+++.||.+|..+|+.++
T Consensus 175 ~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 175 EKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999865
No 3
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.89 E-value=2.1e-22 Score=202.41 Aligned_cols=190 Identities=22% Similarity=0.202 Sum_probs=166.5
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIAC 223 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~ 223 (939)
.++...+..+.++++|+++.||..|+.+|++++++.. .+.+.++|+|+++.||..|+.+||.+++
T Consensus 15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~----------~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA----------VEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG----------HHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccH----------HHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 3456778888999999999999999999999987543 5788999999999999999999999986
Q ss_pred cccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcc
Q 002304 224 IDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAA 303 (939)
Q Consensus 224 ~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a 303 (939)
.+++..|..+++|+++.||..|+++||+++. ..+
T Consensus 80 ----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------------------------------~~~ 113 (211)
T 3ltm_A 80 ----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------------------------------ERA 113 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------------------------GGG
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------------------------HHH
Confidence 3467889999999999999999999999873 346
Q ss_pred hHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHH
Q 002304 304 AGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFL 383 (939)
Q Consensus 304 ~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL 383 (939)
++.|+..|+|+++.||..|+.+||+++.. ++++.|..+++|+++.||..|+++|++++. ++.++.|.
T Consensus 114 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~ 180 (211)
T 3ltm_A 114 VEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAME 180 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHH
Confidence 67888999999999999999999999863 589999999999999999999999999984 56899999
Q ss_pred HhcCCCCHHHHHHHHHHHhhccCC
Q 002304 384 GTLVDNSELVRCAARKILKLVKTP 407 (939)
Q Consensus 384 ~~L~D~~~dVR~aA~~aLg~i~l~ 407 (939)
.+|+|+++.||.+|..+|+.++..
T Consensus 181 ~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 181 KLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987653
No 4
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.88 E-value=4.1e-21 Score=201.06 Aligned_cols=225 Identities=16% Similarity=0.075 Sum_probs=177.0
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHH-HhhCCCCchHHHHHHHHHHHhcchhhhhc
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAV-ELLRDHEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~-~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
....+..+.++++|+++.||..|+.+|++++.... ....+++.+. .+++|+++.||..|+.+||.++...
T Consensus 52 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~---- 122 (280)
T 1oyz_A 52 GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN---- 122 (280)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC----
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC----
Confidence 56788999999999999999999999999975432 1123445554 3579999999999999999998421
Q ss_pred ccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
......++..|..+++|+++.||..|+.+||++++ ..++
T Consensus 123 -----~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------------------------------------~~~~ 161 (280)
T 1oyz_A 123 -----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------------------------------------KATI 161 (280)
T ss_dssp -----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------------------------------CCH
T ss_pred -----CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------------------------------------HHHH
Confidence 01124577889999999999999999999999873 3467
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHH
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLG 384 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~ 384 (939)
+.|+..|.|+++.||..|+.+||+++... ..+++.|+.+++|+++.||..|+.+||+++. ++.++.|+.
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-------~~~~~~L~~ 230 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYDN----SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-------KRVLSVLCD 230 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCCC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------GGGHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccCc----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-------HhhHHHHHH
Confidence 78999999999999999999999997433 4689999999999999999999999999984 468999999
Q ss_pred hcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHh
Q 002304 385 TLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFI 440 (939)
Q Consensus 385 ~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~L 440 (939)
.|+|++ ||.++..+|+.++.+. ++..|...+.+.+ |...+..++..+
T Consensus 231 ~l~d~~--vr~~a~~aL~~i~~~~------~~~~L~~~l~~~~-~~~~~~~~~~~l 277 (280)
T 1oyz_A 231 ELKKNT--VYDDIIEAAGELGDKT------LLPVLDTMLYKFD-DNEIITSAIDKL 277 (280)
T ss_dssp HHTSSS--CCHHHHHHHHHHCCGG------GHHHHHHHHTTSS-CCHHHHHHHHHH
T ss_pred HhcCcc--HHHHHHHHHHhcCchh------hhHHHHHHHhcCC-CcHHHHHHHHHh
Confidence 999965 9999999999998743 3455555554433 333334444433
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.84 E-value=3.5e-20 Score=186.16 Aligned_cols=186 Identities=23% Similarity=0.217 Sum_probs=156.9
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHH
Q 002304 191 CCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVL 270 (939)
Q Consensus 191 ~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~L 270 (939)
.+.++++|+|+++.||..|+++|+.++. .+++..|..+++|+++.||..|+++||+++.
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~---------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD---------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC---------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC---------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 6789999999999999999999999886 3567889999999999999999999999873
Q ss_pred HHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcC
Q 002304 271 LQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350 (939)
Q Consensus 271 lqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnD 350 (939)
..+.+.++..|.|++++||.+|+.+||+++.. ++++.|+.+++|
T Consensus 80 ------------------------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~d 123 (211)
T 3ltm_A 80 ------------------------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------RAVEPLIKALKD 123 (211)
T ss_dssp ------------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHHTTC
T ss_pred ------------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHhC
Confidence 34567888999999999999999999999863 588999999999
Q ss_pred CCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccch
Q 002304 351 DSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDE 430 (939)
Q Consensus 351 e~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr 430 (939)
+++.||..|+.+||+++. ++.++.|...|+|+++.||.++..+|+.++.+.. ...+..++. +..+..|
T Consensus 124 ~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~L~~~l~--d~~~~vr 191 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGGERV---RAAMEKLAE--TGTGFAR 191 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHH---HHHHHHHHH--HCCHHHH
T ss_pred CCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhH---HHHHHHHHh--CCCHHHH
Confidence 999999999999999984 4588999999999999999999999999976332 223444554 4567779
Q ss_pred HHHHHHHHHhhcccc
Q 002304 431 ADVFSVLFFIGRSHG 445 (939)
Q Consensus 431 ~~I~~aL~~LG~~H~ 445 (939)
..+.++|..++.+.+
T Consensus 192 ~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 192 KVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHhcCCCCC
Confidence 999999999987653
No 6
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.84 E-value=6.5e-20 Score=182.86 Aligned_cols=186 Identities=22% Similarity=0.201 Sum_probs=158.3
Q ss_pred hhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcH
Q 002304 188 QGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISE 267 (939)
Q Consensus 188 ~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~ 267 (939)
....+.++++|+|+++.||..|+.+|+.++. ..++..|..+++|+++.||..|+++||+++.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC---------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---
Confidence 3457889999999999999999999999886 3467889999999999999999999999873
Q ss_pred HHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 002304 268 IVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDM 347 (939)
Q Consensus 268 ~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lvdm 347 (939)
..+++.++..|.|++++||..|+.+||+++.. ++++.|+.+
T Consensus 75 ---------------------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~ 115 (201)
T 3ltj_A 75 ---------------------------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------RAVEPLIKA 115 (201)
T ss_dssp ---------------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------HHHHHHHHH
Confidence 34667889999999999999999999999863 588999999
Q ss_pred hcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCc
Q 002304 348 LNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYP 427 (939)
Q Consensus 348 LnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~p 427 (939)
++|+++.||..|+.+||+++. .+.++.|..+|+|+++.||.++..+|+.++.+.. + ..+..++. +..+
T Consensus 116 l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~--~-~~L~~~l~--d~~~ 183 (201)
T 3ltj_A 116 LKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGGERV--R-AAMEKLAE--TGTG 183 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHH--H-HHHHHHHH--HCCH
T ss_pred HcCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhH--H-HHHHHHHh--CCCH
Confidence 999999999999999999984 4588999999999999999999999999975432 1 13344443 3456
Q ss_pred cchHHHHHHHHHhhc
Q 002304 428 QDEADVFSVLFFIGR 442 (939)
Q Consensus 428 eDr~~I~~aL~~LG~ 442 (939)
..|..+.++|++|+.
T Consensus 184 ~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 184 FARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 678888888888864
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.81 E-value=2.9e-18 Score=194.24 Aligned_cols=364 Identities=16% Similarity=0.105 Sum_probs=232.5
Q ss_pred hhhHHHHHHHHhhhcCCCCCCchhhHHHHHHhhcccccC--CCCcchhhhhhhhcc--ccccccchhhHHHHhhhccCCc
Q 002304 38 NSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRH--PHFSPLISNSLRSNS--LLFSSYSPRLAAAAALAVISDH 113 (939)
Q Consensus 38 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 113 (939)
+.+...++..|+... ++ +..++..+.+.|..+...- +...+.++.-+.... -...+-.....++..+++..+.
T Consensus 44 ~~~~~~l~~~L~~~~--d~-~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~ 120 (588)
T 1b3u_A 44 ERTRSELLPFLTDTI--YD-EDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP 120 (588)
T ss_dssp HHHHHTHHHHHHHTC--CC-CHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHhc--CC-cHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH
Confidence 455666777776654 33 3345777777777665431 112223333322111 0111112234455666644332
Q ss_pred -hhHHHH---HHHhhcCCchHHHHHHh---hh-ccccCC-ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccch
Q 002304 114 -TVDDRF---FVSLCFASSVSVRLWLL---RN-AERFNV-RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDV 184 (939)
Q Consensus 114 -~~~~~~---~~~~~~~~~~~~~~~~~---~~-~~~~~v-~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~ 184 (939)
.+...+ ...++-+.+...|.--. .. +..++- -...++..+..+++|+++.||++|+.+|+.+..... +.
T Consensus 121 ~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~--~~ 198 (588)
T 1b3u_A 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE--LD 198 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC--HH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--HH
Confidence 222222 22333344343332111 11 121110 134677888889999999999999999999975421 11
Q ss_pred hhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC
Q 002304 185 DLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM 264 (939)
Q Consensus 185 ~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~ 264 (939)
.....+++.+..+++|+++.||..|+++|+.++...... ......+..+...++|++|.||.+|+++||.+..
T Consensus 199 ~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 271 (588)
T 1b3u_A 199 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQK 271 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 234567889999999999999999999999988643211 1123455667788899999999999999999853
Q ss_pred -CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccch------hhH
Q 002304 265 -ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE------KFA 337 (939)
Q Consensus 265 -vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~------~fA 337 (939)
.+++.. ...+.+.|+..+.|++++||.+|+.+||.++...+ .+.
T Consensus 272 ~~~~~~~-----------------------------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 322 (588)
T 1b3u_A 272 AVGPEIT-----------------------------KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322 (588)
T ss_dssp HHCHHHH-----------------------------HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HhCcccc-----------------------------hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH
Confidence 222111 23457789999999999999999999999875322 244
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc--CCchhHHHH
Q 002304 338 GEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVK--TPKLEFFRL 414 (939)
Q Consensus 338 ~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~--l~~~~~l~~ 414 (939)
...++.+..+++|++|.||..|+.+|+.++. .+.-...+..++.+...|+|++++||.++..+++.+. .+.....+.
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 402 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS 402 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6688999999999999999999999999974 1211123457889999999999999999998887753 121112233
Q ss_pred HHHHHHHhhcc-CccchHHHHHHHHHhhc
Q 002304 415 FIDGLLENLKI-YPQDEADVFSVLFFIGR 442 (939)
Q Consensus 415 ~l~~LL~~L~~-~peDr~~I~~aL~~LG~ 442 (939)
++..+...++. ....|..+..+++.+.+
T Consensus 403 ~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 44445444432 23447777777777753
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=1.9e-16 Score=179.44 Aligned_cols=291 Identities=16% Similarity=0.066 Sum_probs=191.4
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
.+++.+..+++|+++.||++|+++|+.+..... +......+++.+.++++|+++.||..|+.+|+.++.......
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--- 316 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC--- 316 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT---
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC--cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh---
Confidence 355666677778888888888888877765311 011234567778888888888888888888888775331100
Q ss_pred cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhh----hhhc--cccch--hh--h
Q 002304 228 NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKE----KKFH--SLGAA--EC--F 296 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~----kr~~--~~l~~--d~--~ 296 (939)
.........+..+...++|++|.||..|+++|+.+.. .+.+...+.+...+...++. .|.. ..+.. .. .
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 396 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI 396 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH
Confidence 0001234566778889999999999999999999953 23322212222222222221 1110 00000 00 0
Q ss_pred hhhhhcchHHHhhccCCCcHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhc-cccc
Q 002304 297 EISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVIL--SEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC-EHLN 373 (939)
Q Consensus 297 ~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~--s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~-~~i~ 373 (939)
+.......+.++..++|++|.||.+++++|+.++.. ...+....++.+...++|+++.||..|+.+|+.+... +.-.
T Consensus 397 ~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 476 (588)
T 1b3u_A 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476 (588)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh
Confidence 011245678888999999999999999999987642 1122356789999999999999999999999999741 1111
Q ss_pred chhhHHHHHHHhcCCCCHHHHHHHHHHHhhccC--CchhHHHHHHHHHHHhhcc-CccchHHHHHHHHHhhcc
Q 002304 374 LEDKHMHMFLGTLVDNSELVRCAARKILKLVKT--PKLEFFRLFIDGLLENLKI-YPQDEADVFSVLFFIGRS 443 (939)
Q Consensus 374 l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l--~~~~~l~~~l~~LL~~L~~-~peDr~~I~~aL~~LG~~ 443 (939)
..+..+|.+...++|+++.+|.++..+++.+.. +.......++..|+..++. .|+.|..+.++|+.+++.
T Consensus 477 ~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 477 AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 234678888899999999999999999988642 1111233455566666543 456799999999999854
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.70 E-value=8.3e-16 Score=168.99 Aligned_cols=268 Identities=14% Similarity=0.061 Sum_probs=201.2
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc-chhhhhhHHHHHHHhhCC-CCchHHHHHHHHHHHhcchhhhhc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE-DVDLIQGCCCRAVELLRD-HEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~~~l~~~i~~~l~~lL~D-dd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
..+++.+..+++++++.||..|+.+|+.+....... ..-+..+..+.++++|++ .++.||..|+.+|+.+.....
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~--- 182 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS--- 182 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSS---
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCC---
Confidence 346889999999999999999999999998643100 001123467889999985 799999999999999875210
Q ss_pred ccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
.......+..++..|..+++|.++.||..|+++|+.+.....+.... +...+++
T Consensus 183 -~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------------------------~~~~~~i 236 (450)
T 2jdq_A 183 -PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQA-------------------------VIDAGVC 236 (450)
T ss_dssp -SCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHH-------------------------HHHTTTH
T ss_pred -CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHH-------------------------HHHcCcH
Confidence 11122334678999999999999999999999999997644332111 1246788
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc----ccch
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH----LNLE 375 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~----i~l~ 375 (939)
+.++..|.|++++||..|+.+|+.++...+... ..+++.|+.+++++++.||..|+.+|++|+.... ..+.
T Consensus 237 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 316 (450)
T 2jdq_A 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID 316 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999987655432 2488999999999999999999999999985111 1122
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC-chhHHH-----HHHHHHHHhhccC-ccchHHHHHHHHHhhcc
Q 002304 376 DKHMHMFLGTLVDNSELVRCAARKILKLVKTP-KLEFFR-----LFIDGLLENLKIY-PQDEADVFSVLFFIGRS 443 (939)
Q Consensus 376 E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~-~~~~l~-----~~l~~LL~~L~~~-peDr~~I~~aL~~LG~~ 443 (939)
...++.|+..|+|++++||+++..+|+.+-.. +....+ .++..|+..++.. ++.+..+.++|..+...
T Consensus 317 ~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 317 ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999987422 222222 2455666666543 34477788888877654
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.67 E-value=5.5e-15 Score=149.49 Aligned_cols=227 Identities=15% Similarity=0.117 Sum_probs=175.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhccc-ccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVV-FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~-~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
++.+..+++++++.+|..|+.+|..+..... ....-...+..+.++++|+++++.||..|+.+|+.+...... ..
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~ 79 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE----AI 79 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH----HH
Confidence 5778889999999999999999999975432 001112235689999999999999999999999998853100 00
Q ss_pred ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHh
Q 002304 229 RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFV 308 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI 308 (939)
+.-.-..++..|..+++|.++.||..|+++|+.+....++.... +...++++.++
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------------------------~~~~~~i~~L~ 134 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA-------------------------IVDAGGVEVLV 134 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH-------------------------HHHTTHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH-------------------------HHHCCCHHHHH
Confidence 00011357889999999999999999999999997544433211 12467889999
Q ss_pred hccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc----ccchhhHH
Q 002304 309 HGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH----LNLEDKHM 379 (939)
Q Consensus 309 ~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~----i~l~E~aL 379 (939)
..|.+++++||..|+.+|+.+...++... ..+++.|+++++++++.||..|+.+|+.++.... .-.....+
T Consensus 135 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 214 (252)
T 4hxt_A 135 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGV 214 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 99999999999999999999987554432 3478999999999999999999999999985111 11234567
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 380 HMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 380 ~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
+.|+.+|++++++||+.+..+|+.+.
T Consensus 215 ~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 215 EVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 89999999999999999888777754
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.67 E-value=2.9e-15 Score=164.66 Aligned_cols=270 Identities=14% Similarity=0.044 Sum_probs=200.2
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhc--ccccchhhhh-hHHHHHHHhhCCC-CchHHHHHHHHHHHhcchhhhhcc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKH--VVFEDVDLIQ-GCCCRAVELLRDH-EDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~--~~~~~~~l~~-~i~~~l~~lL~Dd-d~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
+..+.+.++++|+.||..|+.+|.++... .......+.. ++++.++++|+++ ++.||..|+.+|+.+........
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~- 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT- 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH-
Confidence 56677788899999999999999997531 1101111222 5789999999988 89999999999998875210000
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchH
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAG 305 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~g 305 (939)
+.-.-..++..|+.+++|+++.||..|+++|+++...+++.-.. ++..++++
T Consensus 101 ---~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~-------------------------~~~~~~i~ 152 (450)
T 2jdq_A 101 ---RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY-------------------------VLDCNILP 152 (450)
T ss_dssp ---HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-------------------------HHHTTCHH
T ss_pred ---HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH-------------------------HHHCCCHH
Confidence 00001357889999999999999999999999997644332111 12467899
Q ss_pred HHhhccCC-CcHHHHHHHHHHHHhccccc-h----hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc----ccch
Q 002304 306 TFVHGFED-EFYEVRKSACSSLGSLVILS-E----KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH----LNLE 375 (939)
Q Consensus 306 aLI~~LeD-E~~eVR~aAaeALGkL~~~s-~----~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~----i~l~ 375 (939)
.|+..|.+ ++++||..|+.+|+.+.... + .+...+++.|+.+++++++.||..|+.+|+.++.... ....
T Consensus 153 ~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 232 (450)
T 2jdq_A 153 PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID 232 (450)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 99999995 79999999999999988432 1 2336789999999999999999999999999985211 1122
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHH-----HHHHHHHHhhccC-ccchHHHHHHHHHhhcccccch
Q 002304 376 DKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFR-----LFIDGLLENLKIY-PQDEADVFSVLFFIGRSHGNFA 448 (939)
Q Consensus 376 E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~-----~~l~~LL~~L~~~-peDr~~I~~aL~~LG~~H~~lv 448 (939)
...++.|+.+|.+++++||..+..+|+.+...+....+ .++..|++.|... +..|+.+.++|++|...+++..
T Consensus 233 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~ 311 (450)
T 2jdq_A 233 AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI 311 (450)
T ss_dssp TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35789999999999999999999999998765443222 2556666666543 3458899999999986544443
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.65 E-value=7.4e-14 Score=163.22 Aligned_cols=318 Identities=15% Similarity=0.116 Sum_probs=188.8
Q ss_pred hcCCchHHHHHHhhhccccCCChhh----HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhh--hHHHHHHHh
Q 002304 124 CFASSVSVRLWLLRNAERFNVRPHL----LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQ--GCCCRAVEL 197 (939)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~~~~----L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~--~i~~~l~~l 197 (939)
+-..+...|..-++.--+ ++..+ +...+.+.+.|++|.||+.|+.+|.++..... ..+. +..+.+.++
T Consensus 95 L~~~n~~ir~~AL~~L~~--i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p----~~~~~~~~~~~l~~l 168 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGC--IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA----QMVEDQGFLDSLRDL 168 (591)
T ss_dssp SSSSSHHHHHHHHHHHHT--CCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC----CCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh----hhcccccHHHHHHHH
Confidence 334444455544444222 33333 44458889999999999999999999986432 1222 467899999
Q ss_pred hCCCCchHHHHHHHHHHHhcchhhhhccccc-ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhH
Q 002304 198 LRDHEDCVRCAAVRVVSEWGKMLIACIDEKN-RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSK 276 (939)
Q Consensus 198 L~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~-~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~k 276 (939)
|.|+++.||..|+.+|+.+.... .+. ...+...++..|+..+.|.++-++....++|+++....++...+.+.
T Consensus 169 L~d~d~~V~~~A~~aL~~i~~~~-----~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~- 242 (591)
T 2vgl_B 169 IADSNPMVVANAVAALSEISESH-----PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICE- 242 (591)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTSC-----CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHH-
T ss_pred hCCCChhHHHHHHHHHHHHHhhC-----CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHH-
Confidence 99999999999999999987621 111 23455678899999999999999999999999997654332221111
Q ss_pred HHhhhhhhhhhccccch-h-hhhh----------hh---hcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHH
Q 002304 277 KVLGATKEKKFHSLGAA-E-CFEI----------SA---SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEAL 341 (939)
Q Consensus 277 klm~~lk~kr~~~~l~~-d-~~~l----------~~---s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~AL 341 (939)
.+...++.....-...+ . -..+ .. ..+.++|+..+ +.+.+||..|+.+|+++....|+.....+
T Consensus 243 ~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~ 321 (591)
T 2vgl_B 243 RVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEI 321 (591)
T ss_dssp HHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCT
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHH
Confidence 11111110000000000 0 0000 00 12333455433 46667777777777776654443322212
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 002304 342 NLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLE 421 (939)
Q Consensus 342 d~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~ 421 (939)
..+....+|+ +.||..|++.|+++++..++ +..++.|...++|.+.++|+.+..+++.+...-....+.+++.|++
T Consensus 322 ~~~~~~~~d~-~~Ir~~al~~L~~l~~~~nv---~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ 397 (591)
T 2vgl_B 322 KVFFVKYNDP-IYVKLEKLDIMIRLASQANI---AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLD 397 (591)
T ss_dssp TTTSCCTTSC-HHHHHHHHHHHHHTCCSSTH---HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhheeccCCh-HHHHHHHHHHHHHHCChhhH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 2122223444 77777777777777643321 3466677777777777777777777777655444444556666666
Q ss_pred hhccCcc-chHHHHHHHHHhhcccccchHHHHHHHhhh
Q 002304 422 NLKIYPQ-DEADVFSVLFFIGRSHGNFAACIIKEVCQE 458 (939)
Q Consensus 422 ~L~~~pe-Dr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~ 458 (939)
.+..-.+ .++.+|.++++|-+++|+..+.++..|.+.
T Consensus 398 ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~ 435 (591)
T 2vgl_B 398 LIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCEN 435 (591)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHT
T ss_pred HHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence 6554332 366667777777666666655566666554
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.65 E-value=1.9e-14 Score=173.50 Aligned_cols=282 Identities=15% Similarity=0.137 Sum_probs=195.6
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
-..++..+...++|+++.||.+|+.+|..+.......-.....++++.+.++++|+++.||..|+++|+.+.......
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~-- 249 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR-- 249 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH--
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH--
Confidence 456788888999999999999999999987643210001223457788899999999999999999999887643211
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCc--HHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcc
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMIS--EIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAA 303 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs--~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a 303 (939)
-.......+..+...+.|.+..||..|++.+..+.... .+.+.+.+ ...
T Consensus 250 ---~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~--------------------------~~l 300 (852)
T 4fdd_A 250 ---LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL--------------------------PKL 300 (852)
T ss_dssp ---HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTH--------------------------HHH
T ss_pred ---HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHH--------------------------HHH
Confidence 01123457778888999999999999999999886422 11111111 111
Q ss_pred hHHHhhcc-----------CC-----------CcHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHhcCCCHHHHHHHH
Q 002304 304 AGTFVHGF-----------ED-----------EFYEVRKSACSSLGSLVILSE-KFAGEALNLLVDMLNDDSVTVRLQAL 360 (939)
Q Consensus 304 ~gaLI~~L-----------eD-----------E~~eVR~aAaeALGkL~~~s~-~fA~~ALd~LvdmLnDe~~~VRl~Aa 360 (939)
++.++..+ .| .+|.||.+|+.+|+.++...+ .+....++.+..+++|++|.||..|+
T Consensus 301 ~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~ 380 (852)
T 4fdd_A 301 IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGI 380 (852)
T ss_dssp HHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 22222222 12 467899999999988875322 23456889999999999999999999
Q ss_pred HHHhhhhhccc---ccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC-----chhHHHHHHHHHHHhhc-cCccchH
Q 002304 361 ETMHIMVTCEH---LNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTP-----KLEFFRLFIDGLLENLK-IYPQDEA 431 (939)
Q Consensus 361 ~ALgkI~~~~~---i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~-----~~~~l~~~l~~LL~~L~-~~peDr~ 431 (939)
.+||.|+.... ...-++.++.++..|+|+++.||.++..++|.+.-. ....+..++..|+..+. ..+..|.
T Consensus 381 ~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~ 460 (852)
T 4fdd_A 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 460 (852)
T ss_dssp HHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999985111 012357889999999999999999999999875421 12345667777887774 4567788
Q ss_pred HHHHHHHHhhcccc----cchHHHHHHHhhh
Q 002304 432 DVFSVLFFIGRSHG----NFAACIIKEVCQE 458 (939)
Q Consensus 432 ~I~~aL~~LG~~H~----~lv~~lv~~Ll~~ 458 (939)
.+.++|..+.+..+ .+...+++.|++.
T Consensus 461 ~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 461 AACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 88899888853322 2345555555554
No 14
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.64 E-value=3.4e-15 Score=152.69 Aligned_cols=227 Identities=12% Similarity=0.042 Sum_probs=174.4
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccc-ccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVV-FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~-~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
.-+..+.+.++++|+.+|..|+.+|..+..... ....-+..+..+.++++|+++++.||..|+.+|+.+......
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---- 87 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE---- 87 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH----
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH----
Confidence 346777888999999999999999976543211 001112235678999999999999999999999998752110
Q ss_pred cccccc-chhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchH
Q 002304 227 KNRIDC-SDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAG 305 (939)
Q Consensus 227 ~~~i~l-vddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~g 305 (939)
. +..+ -..++..|..+++++++.||..|+++|+.+...++..... +...++++
T Consensus 88 ~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------------------------~~~~~~i~ 141 (252)
T 4db8_A 88 Q-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA-------------------------VIDAGALP 141 (252)
T ss_dssp H-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH-------------------------HHHTTHHH
T ss_pred H-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH-------------------------HHHCCCHH
Confidence 0 0011 1347889999999999999999999999996644332111 12567899
Q ss_pred HHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc----cccchh
Q 002304 306 TFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCE----HLNLED 376 (939)
Q Consensus 306 aLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~----~i~l~E 376 (939)
.++..|.|++++||..|+.+|+.+...+++.. ..+++.|+.+++++++.||..|+.+|+.+.... ..-...
T Consensus 142 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 221 (252)
T 4db8_A 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 221 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 99999999999999999999999997554432 346899999999999999999999999997411 111334
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 377 KHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 377 ~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
..++.|+.+|.+.+++||+.|..+|+.+
T Consensus 222 g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 222 GALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp THHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred CcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999988875
No 15
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.64 E-value=3.9e-15 Score=175.33 Aligned_cols=291 Identities=14% Similarity=0.092 Sum_probs=195.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNR 229 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~ 229 (939)
+..+.+-++|++|.||..|+++|+.++.+. +.+.+.+.+.++|+|.++.||..|+.+++.+.....
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~~------~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-------- 174 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGSSE------MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-------- 174 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--------
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCCHH------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--------
Confidence 345566788999999999999999998543 345678888999999999999999999998875321
Q ss_pred cccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHH---H-------HHHhhHH----------------------
Q 002304 230 IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIV---L-------LQTLSKK---------------------- 277 (939)
Q Consensus 230 i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~---L-------lqtL~kk---------------------- 277 (939)
..+...+..+..++.|.++.|+..|+.+|+++....++. + .+.|..-
T Consensus 175 -~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 175 -ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp -GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 122345667788999999999999999999997654431 1 1111110
Q ss_pred Hhhhhhh---hhh---------ccccc--------hh-h--h-------hh-----hhhcchHHHhhccCCCcHHHHHHH
Q 002304 278 VLGATKE---KKF---------HSLGA--------AE-C--F-------EI-----SASAAAGTFVHGFEDEFYEVRKSA 322 (939)
Q Consensus 278 lm~~lk~---kr~---------~~~l~--------~d-~--~-------~l-----~~s~a~gaLI~~LeDE~~eVR~aA 322 (939)
+++.++. ... ...+. .. . + .+ +...+++.+...|++++.+||..|
T Consensus 254 il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~a 333 (618)
T 1w63_A 254 ILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVA 333 (618)
T ss_dssp HHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 0000000 000 00000 00 0 0 00 011255667777888888888888
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHh
Q 002304 323 CSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILK 402 (939)
Q Consensus 323 aeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg 402 (939)
+.+|++++...|....+..+.+..+++|++..||..|++.|.++++..++ +..++.|+..+.+.+.++|..+..+++
T Consensus 334 L~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv---~~iv~eL~~~l~~~d~e~r~~~v~~I~ 410 (618)
T 1w63_A 334 LTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI---RGMMKELLYFLDSCEPEFKADCASGIF 410 (618)
T ss_dssp HHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST---HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888766666666677788888888888888888888888853322 457788888888888888888888888
Q ss_pred hccCCchhHHHHHHHHHHHhhccCcc-chHHHHHHHHHhhcccccchHHHHHHHhhh
Q 002304 403 LVKTPKLEFFRLFIDGLLENLKIYPQ-DEADVFSVLFFIGRSHGNFAACIIKEVCQE 458 (939)
Q Consensus 403 ~i~l~~~~~l~~~l~~LL~~L~~~pe-Dr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~ 458 (939)
.+...-....+..+..|++.|+...+ .+..+|.++.++.+++|++.+..+..|.+.
T Consensus 411 ~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~ 467 (618)
T 1w63_A 411 LAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKA 467 (618)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHH
T ss_pred HHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Confidence 87542222345566777766665442 366678888888777777776666666655
No 16
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.62 E-value=3.5e-15 Score=174.44 Aligned_cols=262 Identities=14% Similarity=0.072 Sum_probs=201.2
Q ss_pred ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhc
Q 002304 145 RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
..+.++..+.++++++++.+|+.+.-++..+.+... ....-+.+.+.+-|+|+++.||..|+++|+.++..
T Consensus 46 d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~----- 116 (591)
T 2vgl_B 46 DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD----- 116 (591)
T ss_dssp CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG-----
T ss_pred ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH-----
Confidence 345566667789999999999999999998876421 11122346778889999999999999999998742
Q ss_pred ccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
.+....+..|..++.|+++.||+.|+.+|+++....++.+. +.+..
T Consensus 117 ------~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~----------------------------~~~~~ 162 (591)
T 2vgl_B 117 ------KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE----------------------------DQGFL 162 (591)
T ss_dssp ------GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH----------------------------HHHHH
T ss_pred ------HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc----------------------------cccHH
Confidence 23355677899999999999999999999998543322211 23456
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHH
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVILSEK-----FAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHM 379 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~-----fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL 379 (939)
+.+..+|.|+++.||.+|+.+|++++..+++ +...++..|+..++|.++.++...+++|+++++.+. ...++.+
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~-~~~~~~l 241 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD-REAQSIC 241 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH-HHHHHHH
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh-HHHHHHH
Confidence 7889999999999999999999999876542 346778899999999999999999999999985321 2235688
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhccC---CchhHHHH----HHHHHHHhhccCccchHHHHHHHHHhhcccccchHH
Q 002304 380 HMFLGTLVDNSELVRCAARKILKLVKT---PKLEFFRL----FIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAAC 450 (939)
Q Consensus 380 ~~LL~~L~D~~~dVR~aA~~aLg~i~l---~~~~~l~~----~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~ 450 (939)
+.+...|++.++.||.++..++..+.. .+.+.++. +...|+..+...+..|..+.++|..+.+.||+.+.+
T Consensus 242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~ 319 (591)
T 2vgl_B 242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQ 319 (591)
T ss_dssp HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHH
Confidence 999999999999999999999988752 12333433 334444445566677889999999999999988754
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.61 E-value=3.3e-14 Score=161.77 Aligned_cols=271 Identities=14% Similarity=0.044 Sum_probs=201.0
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccc--ccchhhhhhHHHHHHHhhCCCC-chHHHHHHHHHHHhcchhhhhc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVV--FEDVDLIQGCCCRAVELLRDHE-DCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~--~~~~~l~~~i~~~l~~lL~Ddd-~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
.-++.+...++++|+.+|..|+.+|.++..... ....-+..++++.++++|++++ +.||..|+.+|+.++.....
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~-- 151 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE-- 151 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH--
Confidence 346777788899999999999999999854221 0111223456899999999887 99999999999998763110
Q ss_pred ccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
....-.-..++..|+.++.++++.||..|+++||.+...++..-.. +...+++
T Consensus 152 --~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~-------------------------i~~~g~l 204 (528)
T 4b8j_A 152 --NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL-------------------------VLANGAL 204 (528)
T ss_dssp --HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH-------------------------HHHTTCH
T ss_pred --HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH-------------------------HHHCCcH
Confidence 0000011357889999999999999999999999996443332110 1256789
Q ss_pred HHHhhcc-CCCcHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc----ccch
Q 002304 305 GTFVHGF-EDEFYEVRKSACSSLGSLVILSE----KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH----LNLE 375 (939)
Q Consensus 305 gaLI~~L-eDE~~eVR~aAaeALGkL~~~s~----~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~----i~l~ 375 (939)
++|+..| .+.++.||..|+.+|+.+....+ .....+++.|+.+++++++.||..|+.+|+.++.... ....
T Consensus 205 ~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 284 (528)
T 4b8j_A 205 LPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (528)
T ss_dssp HHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999 78899999999999999886422 1235689999999999999999999999999985221 1123
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHH-----HHHHHHHhhccC--ccchHHHHHHHHHhhcccccc
Q 002304 376 DKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRL-----FIDGLLENLKIY--PQDEADVFSVLFFIGRSHGNF 447 (939)
Q Consensus 376 E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~-----~l~~LL~~L~~~--peDr~~I~~aL~~LG~~H~~l 447 (939)
...++.|+.+|.+.++.||..+..+|+.+...+....+. ++..|+..|... +..++.+.++|.+|....++.
T Consensus 285 ~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~ 363 (528)
T 4b8j_A 285 AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQ 363 (528)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHH
T ss_pred cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHH
Confidence 357899999999999999999999999987655443332 245566666543 345889999999998654443
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.61 E-value=1.1e-13 Score=157.49 Aligned_cols=265 Identities=14% Similarity=0.057 Sum_probs=198.7
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc-chhhhhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE-DVDLIQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~~~l~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
..++.+..+++++++.||..|+.+|+.+....... ..-+..+..+.++.+| .+.++.||..|+.+|+.+....
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~----- 234 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK----- 234 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-----
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-----
Confidence 46788999999999999999999999997542210 1111224578899999 7889999999999999987631
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchH
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAG 305 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~g 305 (939)
..........++..|+.++.+.++.||..|+++|+.+...+.+.... +...++++
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~-------------------------~~~~g~v~ 289 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA-------------------------VIEAGVCP 289 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHH-------------------------HHHTTCHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH-------------------------HHHcCHHH
Confidence 11112233668899999999999999999999999997654433211 12567899
Q ss_pred HHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHhhhhhccc----ccch
Q 002304 306 TFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDD-SVTVRLQALETMHIMVTCEH----LNLE 375 (939)
Q Consensus 306 aLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe-~~~VRl~Aa~ALgkI~~~~~----i~l~ 375 (939)
.|+..|.++++.||..|+.+||.+...++... ..+++.|+.+++++ ++.||..|+.+|++|+.... ..+.
T Consensus 290 ~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~ 369 (528)
T 4b8j_A 290 RLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN 369 (528)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999997555432 34689999999999 99999999999999985211 1123
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC-chhHHHH-----HHHHHHHhhccC-ccchHHHHHHHHHhhc
Q 002304 376 DKHMHMFLGTLVDNSELVRCAARKILKLVKTP-KLEFFRL-----FIDGLLENLKIY-PQDEADVFSVLFFIGR 442 (939)
Q Consensus 376 E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~-~~~~l~~-----~l~~LL~~L~~~-peDr~~I~~aL~~LG~ 442 (939)
...++.|+.+|.+.+++||+++..+|+.+... +...... ++..|+..|... ++.+..+.++|..|-+
T Consensus 370 ~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 370 AGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999987543 2232222 355666666542 2336666777777754
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.60 E-value=4.1e-14 Score=161.53 Aligned_cols=266 Identities=14% Similarity=0.043 Sum_probs=196.8
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc-chhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE-DVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
..++.+..+++++++.||..|+.+|+.+....... ..-+..+..+.++.+|+|.++.||..|+.+|+.+.... +.
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~----~~ 248 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK----KP 248 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS----SS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC----CC
Confidence 34678888899999999999999999997542100 11122346789999999999999999999999987521 01
Q ss_pred ccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHH
Q 002304 227 KNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGT 306 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ga 306 (939)
.........++..|..++.|.++.||..|+++|+.+...+++..... ...++++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~-------------------------~~~~~v~~ 303 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV-------------------------IDVRIPKR 303 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHH-------------------------HHTTCHHH
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHH-------------------------HhcCcHHH
Confidence 11112235678899999999999999999999999965444332211 24678999
Q ss_pred HhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccc----cchhh
Q 002304 307 FVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHL----NLEDK 377 (939)
Q Consensus 307 LI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i----~l~E~ 377 (939)
++..|.|+++.||..|+.+||.++..++... ..+++.|+.+++++++.||..|+.+|+.|+..... -+...
T Consensus 304 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~ 383 (530)
T 1wa5_B 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 383 (530)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 9999999999999999999999986555432 35789999999999999999999999999852111 12345
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhccCC-ch--hHHHH-----HHHHHHHhhcc-CccchHHHHHHHHHhhc
Q 002304 378 HMHMFLGTLVDNSELVRCAARKILKLVKTP-KL--EFFRL-----FIDGLLENLKI-YPQDEADVFSVLFFIGR 442 (939)
Q Consensus 378 aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~-~~--~~l~~-----~l~~LL~~L~~-~peDr~~I~~aL~~LG~ 442 (939)
.++.|+.+|.+.+++||+++..+|+.+-.. +. +..+. ++..|+..++. .++.+..+.++|..|-.
T Consensus 384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999987321 11 11111 45556665553 33446667777777754
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.60 E-value=3.2e-14 Score=162.48 Aligned_cols=270 Identities=14% Similarity=0.041 Sum_probs=200.5
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc--chhhhhhHHHHHHHhhCCC-CchHHHHHHHHHHHhcchhhhhcc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE--DVDLIQGCCCRAVELLRDH-EDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~--~~~l~~~i~~~l~~lL~Dd-d~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
.+..+...++++|+.+|..|+.+|.++....... ..-+..++++.++++|+++ ++.||..|+.+|+.++......
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~-- 165 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ-- 165 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH--
Confidence 3677777889999999999999999985432100 1112235689999999997 8999999999999987631100
Q ss_pred ccccccc-chhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 226 EKNRIDC-SDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 226 ~~~~i~l-vddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
...+ -..++..|+.+|.++++.||..|+++|+.+...+++.-.. +...+++
T Consensus 166 ---~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~-------------------------~~~~~~l 217 (530)
T 1wa5_B 166 ---TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY-------------------------VLQCNAM 217 (530)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH-------------------------HHHTTCH
T ss_pred ---HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH-------------------------HHHcCcH
Confidence 0001 1346789999999999999999999999996543332110 1246789
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccccc-h----hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc----ccch
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVILS-E----KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH----LNLE 375 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~s-~----~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~----i~l~ 375 (939)
++|+..|.|.+.+||..|+.+|+.+.... + .....+++.|+.++.++++.||..|+.+|+.++.... ..+.
T Consensus 218 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~ 297 (530)
T 1wa5_B 218 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID 297 (530)
T ss_dssp HHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 99999999999999999999999988432 1 1235689999999999999999999999999985211 1122
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHH-----HHHHHHHhhccC-ccchHHHHHHHHHhhcccccch
Q 002304 376 DKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRL-----FIDGLLENLKIY-PQDEADVFSVLFFIGRSHGNFA 448 (939)
Q Consensus 376 E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~-----~l~~LL~~L~~~-peDr~~I~~aL~~LG~~H~~lv 448 (939)
...++.|+.+|.++++.||..+..+|+.+...+....+. ++..|+..|... +..|+.+.++|+.|....++.+
T Consensus 298 ~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 376 (530)
T 1wa5_B 298 VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 376 (530)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 367899999999999999999999999987654433222 445566666543 3458889999999986544433
No 21
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.60 E-value=6e-14 Score=169.20 Aligned_cols=283 Identities=14% Similarity=0.074 Sum_probs=209.2
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc-c----hhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchh
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE-D----VDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKML 220 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~----~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~ 220 (939)
-.++++.+...++++++.+|..|+.+|+.+.+..... + ......+++.+.++++|+++.||.+|+++|+.+....
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR 205 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 4578999999999999999999999999987642200 0 0124567889999999999999999999998765421
Q ss_pred hhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhh
Q 002304 221 IACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA 300 (939)
Q Consensus 221 ~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~ 300 (939)
. +......++.+..|...++|+++.||..|+++|+++....++.+...+
T Consensus 206 ~-----~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-------------------------- 254 (852)
T 4fdd_A 206 T-----QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-------------------------- 254 (852)
T ss_dssp C-----HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--------------------------
T ss_pred c-----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--------------------------
Confidence 1 111233467888999999999999999999999998543333332211
Q ss_pred hcchHHHhhccCCCcHHHHHHHHHHHHhccccc------hhhHHHHHHHHHHHh-----------cC-----------CC
Q 002304 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS------EKFAGEALNLLVDML-----------ND-----------DS 352 (939)
Q Consensus 301 s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s------~~fA~~ALd~LvdmL-----------nD-----------e~ 352 (939)
...++.++..+.|++.+||..|++.+..++... +.+..+.++.|...+ +| +.
T Consensus 255 ~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~ 334 (852)
T 4fdd_A 255 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISD 334 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CC
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccccc
Confidence 235677888999999999999999998887421 123346778887777 45 46
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhH----HHHHHHHHHHhhcc-Cc
Q 002304 353 VTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEF----FRLFIDGLLENLKI-YP 427 (939)
Q Consensus 353 ~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~----l~~~l~~LL~~L~~-~p 427 (939)
|.||..|+.+|+.++....-.+-...++.+...|.|+++.+|+++..++|.+.-..... +..++..+++.+++ .|
T Consensus 335 ~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 335 WNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH
Confidence 78999999999999863222334567888889999999999999999999986544332 34456666665543 34
Q ss_pred cchHHHHHHHHHhhcc-----cccchHHHHHHHhhhc
Q 002304 428 QDEADVFSVLFFIGRS-----HGNFAACIIKEVCQEI 459 (939)
Q Consensus 428 eDr~~I~~aL~~LG~~-----H~~lv~~lv~~Ll~~i 459 (939)
..|..+.+++++++.. +..+...+++.+++..
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L 451 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI 451 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 5689999999998742 3456777888888764
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.59 E-value=1.1e-13 Score=139.90 Aligned_cols=227 Identities=15% Similarity=0.113 Sum_probs=174.0
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHH
Q 002304 191 CCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVL 270 (939)
Q Consensus 191 ~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~L 270 (939)
.+.++++|+++++.||..|+.+|+.+...... ..+.-.-..++..|..++++.+..||..|+++|+.+....++.-
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPAS----AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH----HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 57899999999999999999999998753110 00000113578899999999999999999999999976433331
Q ss_pred HHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHH
Q 002304 271 LQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLV 345 (939)
Q Consensus 271 lqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~Lv 345 (939)
.. +...++++.|+..|.|++.+||..|+.+|+.+...+++.. ..+++.|+
T Consensus 80 ~~-------------------------~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 134 (252)
T 4hxt_A 80 KA-------------------------IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 134 (252)
T ss_dssp HH-------------------------HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HH-------------------------HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 11 1256788999999999999999999999999996555433 24789999
Q ss_pred HHhcCCCHHHHHHHHHHHhhhhhcc----cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHH-----HH
Q 002304 346 DMLNDDSVTVRLQALETMHIMVTCE----HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRL-----FI 416 (939)
Q Consensus 346 dmLnDe~~~VRl~Aa~ALgkI~~~~----~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~-----~l 416 (939)
.+++++++.||..|+.+|++|+... ..-.....++.|+.+|.+++++||..+..+|+.+...+....+. ++
T Consensus 135 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 214 (252)
T 4hxt_A 135 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGV 214 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 9999999999999999999998521 11123458899999999999999999999999987655444333 35
Q ss_pred HHHHHhhccC-ccchHHHHHHHHHhhccccc
Q 002304 417 DGLLENLKIY-PQDEADVFSVLFFIGRSHGN 446 (939)
Q Consensus 417 ~~LL~~L~~~-peDr~~I~~aL~~LG~~H~~ 446 (939)
..|+..++.. ++.+..+.++|.+|+...+.
T Consensus 215 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 215 EVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 6666666543 34488899999999865533
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.56 E-value=1e-13 Score=152.19 Aligned_cols=282 Identities=13% Similarity=0.072 Sum_probs=189.1
Q ss_pred hhHHHHHHhhhcCC--CHHHHHHHHHHHHhhhhcc--cccchhhhhhHHHHHHHhhCCC--CchHHHHHHHHHHHhcchh
Q 002304 147 HLLFTVCLGLTKDP--YPYVREAALNGLVCLLKHV--VFEDVDLIQGCCCRAVELLRDH--EDCVRCAAVRVVSEWGKML 220 (939)
Q Consensus 147 ~~L~~~L~~ll~D~--Dp~VRraAl~AL~~L~~~~--~~~~~~l~~~i~~~l~~lL~Dd--d~~VR~aAV~aLg~lg~~~ 220 (939)
.++++.+...++++ ++.+|..|+.+|+.+.+.. ... ......+++.+...|+|+ ++.||.+|+++++.+....
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh-HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47888888899998 9999999999999998642 111 123456788899999999 7999999999999865432
Q ss_pred hhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhh
Q 002304 221 IACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA 300 (939)
Q Consensus 221 ~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~ 300 (939)
....+. .. ..+..+..|+..+.|.++.||..|++.|+.+.....+.+.+. -
T Consensus 206 ~~~~~~--~~-~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~--------------------------~ 256 (462)
T 1ibr_B 206 KANFDK--ES-ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY--------------------------M 256 (462)
T ss_dssp HHHHTS--HH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT--------------------------T
T ss_pred HHhhhh--hH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------H
Confidence 111000 00 112246677888999999999999999999853211111000 1
Q ss_pred h-cchHHHhhccCCCcHHHHHHHHHHHHhccccc---------------------hhh----HHHHHHHHHHHhc-----
Q 002304 301 S-AAAGTFVHGFEDEFYEVRKSACSSLGSLVILS---------------------EKF----AGEALNLLVDMLN----- 349 (939)
Q Consensus 301 s-~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s---------------------~~f----A~~ALd~LvdmLn----- 349 (939)
. ...+.++..+.|++.+||..|++.++.++... ..+ ....++.|+.++.
T Consensus 257 ~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d 336 (462)
T 1ibr_B 257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN 336 (462)
T ss_dssp TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccc
Confidence 1 34556667778888888888888777665321 011 2456677776664
Q ss_pred --CCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCch-----hHHHHHHHHHHHh
Q 002304 350 --DDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKL-----EFFRLFIDGLLEN 422 (939)
Q Consensus 350 --De~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~-----~~l~~~l~~LL~~ 422 (939)
|++|.||..|+.+|+.++..-.-.+-...++.+...|+|+++.+|.++..++|.+.-... ..+..++..+++.
T Consensus 337 ~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~ 416 (462)
T 1ibr_B 337 DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416 (462)
T ss_dssp CCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 345788888888888887521112334566777778888888888888888888753221 1223456666666
Q ss_pred hc-cCccchHHHHHHHHHhhcc------cccchHHHHHHHhhh
Q 002304 423 LK-IYPQDEADVFSVLFFIGRS------HGNFAACIIKEVCQE 458 (939)
Q Consensus 423 L~-~~peDr~~I~~aL~~LG~~------H~~lv~~lv~~Ll~~ 458 (939)
|+ ..|..|..+.++|++++.. ++.+..++++.|++.
T Consensus 417 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~ 459 (462)
T 1ibr_B 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (462)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC
T ss_pred hcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 64 3466788888888888643 234667777777654
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.55 E-value=7.1e-14 Score=139.31 Aligned_cols=196 Identities=12% Similarity=0.059 Sum_probs=147.0
Q ss_pred CCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc-chhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhh
Q 002304 143 NVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE-DVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLI 221 (939)
Q Consensus 143 ~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~ 221 (939)
+-+.+.....+..+++++|+.||..|+.+|+.+....... ..-+..+.++.++++|+++++.||..|+.+|+.+.....
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 3456667788899999999999999999999998432100 111223567899999999999999999999999873210
Q ss_pred hhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhh
Q 002304 222 ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISAS 301 (939)
Q Consensus 222 ~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s 301 (939)
. ..+.-.-..++..|..+|+++++.||..|+++|+.+....++.... +++.
T Consensus 87 ~----~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------------------------~~~~ 137 (210)
T 4db6_A 87 E----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA-------------------------VIDA 137 (210)
T ss_dssp H----HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH-------------------------HHHT
T ss_pred H----HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH-------------------------HHHc
Confidence 0 0000011346789999999999999999999999997544443221 1256
Q ss_pred cchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 302 AAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 302 ~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
++++.|++.|.+++.+||..|+.+|+.+...+++.. ..+++.|+++++++++.||.+|+.+|++++
T Consensus 138 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999987544432 246889999999999999999999999886
No 25
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.54 E-value=1.4e-15 Score=143.73 Aligned_cols=118 Identities=17% Similarity=0.130 Sum_probs=71.2
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHH
Q 002304 191 CCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVL 270 (939)
Q Consensus 191 ~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~L 270 (939)
.+.+..+|+|+++.||..|+.+|+.+++. ++..|..+++|+++.||..|+++||++++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDE----------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSST----------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCch----------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 35566666777777777777766665531 13566666677777777777777776652
Q ss_pred HHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcC
Q 002304 271 LQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350 (939)
Q Consensus 271 lqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnD 350 (939)
..+++.|+..|+|+++.||.+|+.+||+++. .++++.|+.+++|
T Consensus 72 ------------------------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~~a~~~L~~~l~d 115 (131)
T 1te4_A 72 ------------------------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ERVRAAMEKLAET 115 (131)
T ss_dssp ------------------------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------HHHHHHHHHHTTS
T ss_pred ------------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhC
Confidence 2234456666666666777777777776664 3466666666666
Q ss_pred CCHHHHHHHHHHHhhh
Q 002304 351 DSVTVRLQALETMHIM 366 (939)
Q Consensus 351 e~~~VRl~Aa~ALgkI 366 (939)
+++.||..|+.+|++|
T Consensus 116 ~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 116 GTGFARKVAVNYLETH 131 (131)
T ss_dssp CCTHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHhC
Confidence 6667777777666654
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.52 E-value=4.2e-13 Score=133.69 Aligned_cols=188 Identities=13% Similarity=0.078 Sum_probs=147.9
Q ss_pred hHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHH
Q 002304 189 GCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEI 268 (939)
Q Consensus 189 ~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~ 268 (939)
+.++.+..+|+++++.||..|+.+|+.+...... ..+.-.-..++..|..+|+++++.||..|+++|+++....++
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 3578999999999999999999999998742100 000001135788999999999999999999999999643333
Q ss_pred HHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHH
Q 002304 269 VLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNL 343 (939)
Q Consensus 269 ~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~ 343 (939)
.... ++..++++.++..|.+++..||..|+.+|+++...+++.. ..+++.
T Consensus 88 ~~~~-------------------------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 142 (210)
T 4db6_A 88 QIQA-------------------------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142 (210)
T ss_dssp HHHH-------------------------HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHH-------------------------HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH
Confidence 2111 2357889999999999999999999999999986555432 347899
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhhhhcc----cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 344 LVDMLNDDSVTVRLQALETMHIMVTCE----HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 344 LvdmLnDe~~~VRl~Aa~ALgkI~~~~----~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
|+++++++++.||..|+.+|+.+.... ........++.|..+|.+++++||+.|..+|+.+.
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999998521 11123357899999999999999999999988753
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.52 E-value=4.3e-13 Score=137.09 Aligned_cols=224 Identities=13% Similarity=0.034 Sum_probs=167.4
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHH
Q 002304 190 CCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIV 269 (939)
Q Consensus 190 i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~ 269 (939)
.|+.+...|+++++.||..|+..|..+..... +..+.-.-..++..|+.++++.++.||..|+++|+.+....++.
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~----~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHH----HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC----chHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 47899999999999999999999965432110 00000011357889999999999999999999999997543333
Q ss_pred HHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhh----H-HHHHHHH
Q 002304 270 LLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKF----A-GEALNLL 344 (939)
Q Consensus 270 LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~f----A-~~ALd~L 344 (939)
-.. +...++++.++..|.+++++||..|+.+|+.++...+.- . ..+++.|
T Consensus 89 ~~~-------------------------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 143 (252)
T 4db8_A 89 IQA-------------------------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143 (252)
T ss_dssp HHH-------------------------HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHH-------------------------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHH
Confidence 111 125678999999999999999999999999998754332 1 3478999
Q ss_pred HHHhcCCCHHHHHHHHHHHhhhhhccc----ccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHH-----H
Q 002304 345 VDMLNDDSVTVRLQALETMHIMVTCEH----LNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRL-----F 415 (939)
Q Consensus 345 vdmLnDe~~~VRl~Aa~ALgkI~~~~~----i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~-----~ 415 (939)
+++++++++.||..|+.+|++++.... .......++.|+.+|++++++||..+..+|+.+...+....+. +
T Consensus 144 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 223 (252)
T 4db8_A 144 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 223 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Confidence 999999999999999999999985221 1123467899999999999999999999999886544443333 3
Q ss_pred HHHHHHhhccC-ccchHHHHHHHHHhhc
Q 002304 416 IDGLLENLKIY-PQDEADVFSVLFFIGR 442 (939)
Q Consensus 416 l~~LL~~L~~~-peDr~~I~~aL~~LG~ 442 (939)
+..|+..+... ++.++.+.++|.+|.+
T Consensus 224 i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 224 LEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 44466555543 4457778888887753
No 28
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.51 E-value=4.2e-13 Score=159.72 Aligned_cols=279 Identities=14% Similarity=0.092 Sum_probs=193.5
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccc-ccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhh---
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVV-FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIAC--- 223 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~-~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~--- 223 (939)
.++..+...++|+++.||..|++.|+.+..... .....+...+++.+...+.|+++.||..|++.+..+.......
T Consensus 217 ~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 367778888899999999999999999876421 0111122257788888889999999999999998876532100
Q ss_pred -----ccc----cccccc----chhHHHHHHHhhc-------CCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhh
Q 002304 224 -----IDE----KNRIDC----SDVVFIQLCSMIR-------DMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGAT 282 (939)
Q Consensus 224 -----~~~----~~~i~l----vddaf~aLc~aL~-------D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~l 282 (939)
.+. ...... ....+..+...+. |.+|.||.+|+.+|+.+.. .+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~------------- 363 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI------------- 363 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-------------
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh-------------
Confidence 000 000011 1334455666663 6789999999999999843 11111
Q ss_pred hhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccch-h----hHHHHHHHHHHHhcCCCHHHHH
Q 002304 283 KEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE-K----FAGEALNLLVDMLNDDSVTVRL 357 (939)
Q Consensus 283 k~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~-~----fA~~ALd~LvdmLnDe~~~VRl 357 (939)
-+...+.+...|.|++|.||.+|+.+||.++.... + +....++.|+..++|+++.||.
T Consensus 364 -----------------~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~ 426 (876)
T 1qgr_A 364 -----------------VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426 (876)
T ss_dssp -----------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred -----------------HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 12345667788999999999999999999986432 2 3467899999999999999999
Q ss_pred HHHHHHhhhhhcc-----cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC------------------chhHHHH
Q 002304 358 QALETMHIMVTCE-----HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTP------------------KLEFFRL 414 (939)
Q Consensus 358 ~Aa~ALgkI~~~~-----~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~------------------~~~~l~~ 414 (939)
.|+.+||+++..- ....-+..++.++..|+|. +.||.++..+++.+.-. -...+..
T Consensus 427 ~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 427 TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp HHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred HHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHH
Confidence 9999999998521 1123457889999999996 99999998888764311 1124566
Q ss_pred HHHHHHHhhccCc----cchHHHHHHHHHhhcccc----cchHHHHHHHhh
Q 002304 415 FIDGLLENLKIYP----QDEADVFSVLFFIGRSHG----NFAACIIKEVCQ 457 (939)
Q Consensus 415 ~l~~LL~~L~~~p----eDr~~I~~aL~~LG~~H~----~lv~~lv~~Ll~ 457 (939)
++..|+..+.+.. ..|..++++++.+.+.-+ .++..+++.+++
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 556 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHH
Confidence 7788888777653 336678888888865433 233344444443
No 29
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.50 E-value=9.8e-15 Score=137.97 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=101.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCC
Q 002304 235 VVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDE 314 (939)
Q Consensus 235 daf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE 314 (939)
.....|..+|+|+++.||..|+++||+++.. +++.|+..|+|+
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------------------------------------~~~~L~~~L~d~ 54 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE-------------------------------------AFEPLLESLSNE 54 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST-------------------------------------THHHHHHGGGCS
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------------------------------------HHHHHHHHHcCC
Confidence 3456788999999999999999999998742 236788899999
Q ss_pred cHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHH
Q 002304 315 FYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVR 394 (939)
Q Consensus 315 ~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR 394 (939)
++.||..|+.+||+++. ..+++.|+.+++|+++.||..|+.+||+++. ++.++.|...|+|+++.||
T Consensus 55 ~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr 121 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFAR 121 (131)
T ss_dssp CHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHH
T ss_pred CHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHH
Confidence 99999999999999996 4689999999999999999999999999984 4689999999999999999
Q ss_pred HHHHHHHhhc
Q 002304 395 CAARKILKLV 404 (939)
Q Consensus 395 ~aA~~aLg~i 404 (939)
.++..+|+.+
T Consensus 122 ~~A~~aL~~i 131 (131)
T 1te4_A 122 KVAVNYLETH 131 (131)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHhC
Confidence 9999999864
No 30
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.49 E-value=1.3e-12 Score=155.10 Aligned_cols=270 Identities=16% Similarity=0.138 Sum_probs=192.7
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccc-ccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVV-FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~-~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
..++..+...++|+++.||+.|++.|+.+..... .....+...+++.+...+.|.++.||..|++.++.+.........
T Consensus 223 ~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 302 (861)
T 2bpt_A 223 NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302 (861)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3577888889999999999999999999976421 011112116777788899999999999999999887654211000
Q ss_pred cc------------cccccchhHHHHHHHhhc-------CCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhh
Q 002304 226 EK------------NRIDCSDVVFIQLCSMIR-------DMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEK 285 (939)
Q Consensus 226 ~~------------~~i~lvddaf~aLc~aL~-------D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~k 285 (939)
.. .........+..+...+. |.+|.||..|++.|+.+.. .+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~---------------- 366 (861)
T 2bpt_A 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI---------------- 366 (861)
T ss_dssp HHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG----------------
T ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhH----------------
Confidence 00 000112445666777776 3569999999999999853 11111
Q ss_pred hhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccch-h----hHHHHHHHHHHHhcCCCHHHHHHHH
Q 002304 286 KFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE-K----FAGEALNLLVDMLNDDSVTVRLQAL 360 (939)
Q Consensus 286 r~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~-~----fA~~ALd~LvdmLnDe~~~VRl~Aa 360 (939)
-+...+.+...|.|++|.+|.+|+.+||.++.... . +....++.|+..++|+++.||..|+
T Consensus 367 --------------~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~ 432 (861)
T 2bpt_A 367 --------------LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTA 432 (861)
T ss_dssp --------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 12345567778899999999999999999986432 2 2356789999999999999999999
Q ss_pred HHHhhhhhcc--c---ccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccC-------C-chhHHHHHHHHHHHhhccC-
Q 002304 361 ETMHIMVTCE--H---LNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKT-------P-KLEFFRLFIDGLLENLKIY- 426 (939)
Q Consensus 361 ~ALgkI~~~~--~---i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l-------~-~~~~l~~~l~~LL~~L~~~- 426 (939)
.+||+++..- . ...-+..++.++..|+|+ +.||.++..+++.+.- . -..-+..++..|++.++..
T Consensus 433 ~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d 511 (861)
T 2bpt_A 433 WCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID 511 (861)
T ss_dssp HHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC
Confidence 9999998521 1 223467889999999997 9999999998875421 1 1134566778888888743
Q ss_pred --ccchHHHHHHHHHhhcccccc
Q 002304 427 --PQDEADVFSVLFFIGRSHGNF 447 (939)
Q Consensus 427 --peDr~~I~~aL~~LG~~H~~l 447 (939)
+..|..++++++.+....++-
T Consensus 512 ~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 512 NEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHCCGG
T ss_pred cchHHHHHHHHHHHHHHHHcchh
Confidence 345888999999997665543
No 31
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.48 E-value=1e-11 Score=136.44 Aligned_cols=249 Identities=14% Similarity=0.059 Sum_probs=166.3
Q ss_pred hhHHHHHHhhhcCC--CHHHHHHHHHHHHhhhhcc--cccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhh
Q 002304 147 HLLFTVCLGLTKDP--YPYVREAALNGLVCLLKHV--VFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 147 ~~L~~~L~~ll~D~--Dp~VRraAl~AL~~L~~~~--~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~ 222 (939)
..++..+...++|+ ++.||.+|+++++.+...- ..........+.+.+.+++.|+++.||..|+++|+.+......
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46888889999999 7999999999999754210 0000011122466677888999999999999999998864321
Q ss_pred hcccccccccch-hHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhh
Q 002304 223 CIDEKNRIDCSD-VVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISAS 301 (939)
Q Consensus 223 ~~~~~~~i~lvd-daf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s 301 (939)
. -..... ..+..+...++|.+..||..|.+.++.+.....+. ..... ......+.........+...-.
T Consensus 251 ~-----~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 251 Y-----METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL--AIEAS---EAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp G-----CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH--HHHHC---CTTCSSSCSSCCCCCHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH--HHhcc---cccccCCCccchhHHHHHHHhh
Confidence 1 012234 67777888889999999999999998875321110 00000 0000000000000000000013
Q ss_pred cchHHHhhcc-------CCCcHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc-c
Q 002304 302 AAAGTFVHGF-------EDEFYEVRKSACSSLGSLVILSE-KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH-L 372 (939)
Q Consensus 302 ~a~gaLI~~L-------eDE~~eVR~aAaeALGkL~~~s~-~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~-i 372 (939)
..++.++..| .|++|.||.+|+.+|+.++...+ .+....++.+..+++|++|.||..|+.+||.++.... -
T Consensus 321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH
Confidence 3455555555 34578999999999998875332 3446678999999999999999999999999985211 1
Q ss_pred ---cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 373 ---NLEDKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 373 ---~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
..-+..++.++..|+|+++.||.+|..+|+.+.
T Consensus 401 ~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 122568999999999999999999999998864
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.47 E-value=2e-12 Score=145.29 Aligned_cols=292 Identities=13% Similarity=0.031 Sum_probs=195.7
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhh--hhHHHHHHHhhC-CCCchHHHHHHHHHHHhcchhhhh
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLI--QGCCCRAVELLR-DHEDCVRCAAVRVVSEWGKMLIAC 223 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~--~~i~~~l~~lL~-Ddd~~VR~aAV~aLg~lg~~~~~~ 223 (939)
...++.+.++++++|+.||..|+.+|+.+...... ...+. .+.++.++++|+ ++++.+|..|+.+|+.++....
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~-- 92 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-- 92 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH-HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH--
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc-HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch--
Confidence 34678888999999999999999999999764321 00111 256788999996 4589999999999999875311
Q ss_pred ccccccccc-chhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHH---HH-HHHhhHHHhhhhhhhhh--c-------c
Q 002304 224 IDEKNRIDC-SDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEI---VL-LQTLSKKVLGATKEKKF--H-------S 289 (939)
Q Consensus 224 ~~~~~~i~l-vddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~---~L-lqtL~kklm~~lk~kr~--~-------~ 289 (939)
. +..+ -..++..|..+++++++.||..|+++|+++...+++ .+ ....-+.++.-++.... . .
T Consensus 93 ---~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 93 ---G-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp ---H-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred ---h-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0 0011 135788999999999999999999999999432111 11 11111112222221100 0 0
Q ss_pred ccch--h--hhhhhhhcchHHHhhccCCCcH-HHHHHHHHHHHhccccchhh-----HHHHHHHHHHHhcCCCHHHHHHH
Q 002304 290 LGAA--E--CFEISASAAAGTFVHGFEDEFY-EVRKSACSSLGSLVILSEKF-----AGEALNLLVDMLNDDSVTVRLQA 359 (939)
Q Consensus 290 ~l~~--d--~~~l~~s~a~gaLI~~LeDE~~-eVR~aAaeALGkL~~~s~~f-----A~~ALd~LvdmLnDe~~~VRl~A 359 (939)
.++. + +..+...++++.|++.|++.+. .++.+|+..|..++. +++. ...+++.|+.++++++..||..|
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a 247 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHH
Confidence 0110 1 1234566778888888876544 455566777777764 2222 13578999999999999999999
Q ss_pred HHHHhhhhhcc-cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHH-----HHHHHHHhhccC---ccch
Q 002304 360 LETMHIMVTCE-HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRL-----FIDGLLENLKIY---PQDE 430 (939)
Q Consensus 360 a~ALgkI~~~~-~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~-----~l~~LL~~L~~~---peDr 430 (939)
+.+|++++... .....+..++.|+.+|.+++++||..+..+|+.+...+....+. .+..|+..|... ++.+
T Consensus 248 ~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 248 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 99999998521 12223578999999999999999999999999986654322221 355666666542 3457
Q ss_pred HHHHHHHHHhhccccc
Q 002304 431 ADVFSVLFFIGRSHGN 446 (939)
Q Consensus 431 ~~I~~aL~~LG~~H~~ 446 (939)
..+.++|+.|...+|+
T Consensus 328 ~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 328 EPAICALRHLTSRHQE 343 (529)
T ss_dssp HHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHcCCch
Confidence 7889999999776544
No 33
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.47 E-value=3.2e-12 Score=152.13 Aligned_cols=310 Identities=14% Similarity=0.122 Sum_probs=206.9
Q ss_pred hhHHHHHHhhhcCC--CHHHHHHHHHHHHhhhhcccc-cchhhhhhHHHHHHHhhCCC--CchHHHHHHHHHHHhcchhh
Q 002304 147 HLLFTVCLGLTKDP--YPYVREAALNGLVCLLKHVVF-EDVDLIQGCCCRAVELLRDH--EDCVRCAAVRVVSEWGKMLI 221 (939)
Q Consensus 147 ~~L~~~L~~ll~D~--Dp~VRraAl~AL~~L~~~~~~-~~~~l~~~i~~~l~~lL~Dd--d~~VR~aAV~aLg~lg~~~~ 221 (939)
.++++.+...++|+ ++.+|..|+.+|+.+...-.. .-......+++.+.+.++|+ ++.||..|+++++.+.....
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999 999999999999998764110 00133456788889999988 68999999999998765321
Q ss_pred hhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhh----HHHhhhhhhh----hhc-----
Q 002304 222 ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLS----KKVLGATKEK----KFH----- 288 (939)
Q Consensus 222 ~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~----kklm~~lk~k----r~~----- 288 (939)
..-+. . .+.+..+..++..++|.++.||..|++.|+.+.....+.+.+.+. ..++..++.. +..
T Consensus 207 ~~~~~--~-~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 207 ANFDK--E-SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp HHHTS--H-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHh--H-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 11000 0 011235677888899999999999999999874321111111111 1111111000 000
Q ss_pred cccchh---------------------hhhh---hhhcchHHHhhccC-------CCcHHHHHHHHHHHHhccccch-hh
Q 002304 289 SLGAAE---------------------CFEI---SASAAAGTFVHGFE-------DEFYEVRKSACSSLGSLVILSE-KF 336 (939)
Q Consensus 289 ~~l~~d---------------------~~~l---~~s~a~gaLI~~Le-------DE~~eVR~aAaeALGkL~~~s~-~f 336 (939)
..+... .+.. .-...++.++..|. |++|.||.+|+.+|+.++...+ .+
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~ 363 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh
Confidence 000000 0000 01234555666653 5689999999999988875322 34
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc-c---cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC-----
Q 002304 337 AGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH-L---NLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTP----- 407 (939)
Q Consensus 337 A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~-i---~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~----- 407 (939)
....++.+...++|++|.||..|+.+||.++..-. . ..-+..++.++..|+|+++.||.++..+++.+.-.
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc
Confidence 56788999999999999999999999999985211 1 12245788999999999999999999999976421
Q ss_pred -chhHHHHHHHHHHHhhccCccchHHHHHHHHHhhccc------------------ccchHHHHHHHhhhc
Q 002304 408 -KLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSH------------------GNFAACIIKEVCQEI 459 (939)
Q Consensus 408 -~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H------------------~~lv~~lv~~Ll~~i 459 (939)
....+..++..|+..+...+..+..+.+++..+...- ..+...+++.|++..
T Consensus 444 ~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l 514 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETT 514 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHH
Confidence 2345778889999988876666888889998886431 134567778777764
No 34
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.44 E-value=8.6e-12 Score=148.15 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=200.3
Q ss_pred hhHHHHHHhhhcCC-CHHHHHHHHHHHHhhhhccccc---chhhhhhHHHHHHHhhCCC--CchHHHHHHHHHHHhcchh
Q 002304 147 HLLFTVCLGLTKDP-YPYVREAALNGLVCLLKHVVFE---DVDLIQGCCCRAVELLRDH--EDCVRCAAVRVVSEWGKML 220 (939)
Q Consensus 147 ~~L~~~L~~ll~D~-Dp~VRraAl~AL~~L~~~~~~~---~~~l~~~i~~~l~~lL~Dd--d~~VR~aAV~aLg~lg~~~ 220 (939)
.+++..+...++++ ++.+|..|+..|+.+.+.-... -......+++.+...+.|+ ++.||.+|+++++.+-...
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57889999999999 9999999999999998642100 0124566788889999998 8999999999999864322
Q ss_pred hhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhh
Q 002304 221 IACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA 300 (939)
Q Consensus 221 ~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~ 300 (939)
...-+. ... .+..+..|+..+.|++|.||..|++.|+++....++.+.+.+ .
T Consensus 213 ~~~~~~--~~~-~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-------------------------~ 264 (861)
T 2bpt_A 213 KNNMER--EGE-RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-------------------------E 264 (861)
T ss_dssp HHHHTS--HHH-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-------------------------H
T ss_pred HHHccC--hhH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------H
Confidence 110000 000 134677888999999999999999999998431111111110 1
Q ss_pred hcchHHHhhccCCCcHHHHHHHHHHHHhccccch---------------------hhHHHHHHHHHHHhcC-------CC
Q 002304 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE---------------------KFAGEALNLLVDMLND-------DS 352 (939)
Q Consensus 301 s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~---------------------~fA~~ALd~LvdmLnD-------e~ 352 (939)
...++.+..++.|++.+||..|++.++.+..... .+....++.|+..+.+ ++
T Consensus 265 ~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~ 344 (861)
T 2bpt_A 265 QALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDD 344 (861)
T ss_dssp HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1345667888999999999999999987764311 1225577888888874 45
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCch-hHHH----HHHHHHHHhhc-cC
Q 002304 353 VTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKL-EFFR----LFIDGLLENLK-IY 426 (939)
Q Consensus 353 ~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~-~~l~----~~l~~LL~~L~-~~ 426 (939)
+.||..|..+|+.++..-.-.+-+..++.+...|.|.++.+|+++..++|.+.-... ..+. .++..+++.++ ..
T Consensus 345 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~ 424 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS 424 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC
T ss_pred CcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 799999999999998522222335677888889999999999999999999875432 3333 34444555443 34
Q ss_pred ccchHHHHHHHHHhhcc------cccchHHHHHHHhhhc
Q 002304 427 PQDEADVFSVLFFIGRS------HGNFAACIIKEVCQEI 459 (939)
Q Consensus 427 peDr~~I~~aL~~LG~~------H~~lv~~lv~~Ll~~i 459 (939)
|..|..+.+++++++.. .+.+...+++.+++..
T Consensus 425 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l 463 (861)
T 2bpt_A 425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh
Confidence 55688888999988743 1356777888887764
No 35
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.43 E-value=1.1e-14 Score=154.23 Aligned_cols=165 Identities=24% Similarity=0.176 Sum_probs=103.0
Q ss_pred HHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccccccc
Q 002304 153 CLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDC 232 (939)
Q Consensus 153 L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~l 232 (939)
+..+++|+||+||++|+.+|. . ..+..+++|+++.||..|+..|+ .
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l~------~-----------~~l~~L~~D~~~~VR~~aA~~L~---~-------------- 100 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYSP------V-----------EALTPLIRDSDEVVRRAVAYRLP---R-------------- 100 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC------G-----------GGGGGGTTCSSHHHHHHHHTTSC---S--------------
T ss_pred HHHHhcCCCHHHHHHHHHhCC------H-----------HHHHHHccCcCHHHHHHHHHHCC---H--------------
Confidence 346778888999988888651 1 12566788888888888887542 1
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC
Q 002304 233 SDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE 312 (939)
Q Consensus 233 vddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le 312 (939)
..|..+++|++|.||.+||..|. .+.|...+.+. ....|. .....-..+.+...++
T Consensus 101 -----~~L~~ll~D~d~~VR~~aA~~l~------~~~L~~L~~D~----d~~VR~---------~aA~~l~~~~l~~l~~ 156 (244)
T 1lrv_A 101 -----EQLSALMFDEDREVRITVADRLP------LEQLEQMAADR----DYLVRA---------YVVQRIPPGRLFRFMR 156 (244)
T ss_dssp -----GGGGGTTTCSCHHHHHHHHHHSC------TGGGGGGTTCS----SHHHHH---------HHHHHSCGGGGGGTTT
T ss_pred -----HHHHHHHcCCCHHHHHHHHHhCC------HHHHHHHHcCC----CHHHHH---------HHHHhcCHHHHHHHHc
Confidence 12446788888888888888652 22221111100 000000 0000111234566778
Q ss_pred CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHH
Q 002304 313 DEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSEL 392 (939)
Q Consensus 313 DE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~d 392 (939)
|++++||.+++.+++. +.|..+++|++|.||..|+.+| + .+.|..+++|+++.
T Consensus 157 D~d~~VR~~aa~~l~~-------------~ll~~ll~D~d~~VR~aaa~~l---~-----------~~~L~~Ll~D~d~~ 209 (244)
T 1lrv_A 157 DEDRQVRKLVAKRLPE-------------ESLGLMTQDPEPEVRRIVASRL---R-----------GDDLLELLHDPDWT 209 (244)
T ss_dssp CSCHHHHHHHHHHSCG-------------GGGGGSTTCSSHHHHHHHHHHC---C-----------GGGGGGGGGCSSHH
T ss_pred CCCHHHHHHHHHcCCH-------------HHHHHHHcCCCHHHHHHHHHhC---C-----------HHHHHHHHcCCCHH
Confidence 8888888888876321 2355678888888888888764 2 13566778888888
Q ss_pred HHHHHHHHHh
Q 002304 393 VRCAARKILK 402 (939)
Q Consensus 393 VR~aA~~aLg 402 (939)
||.+++..++
T Consensus 210 VR~~aa~~l~ 219 (244)
T 1lrv_A 210 VRLAAVEHAS 219 (244)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHcCC
Confidence 8888888765
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.40 E-value=9e-12 Score=143.01 Aligned_cols=288 Identities=11% Similarity=0.032 Sum_probs=197.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc--chhhhhhHHHHHHHhhC-CCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE--DVDLIQGCCCRAVELLR-DHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~--~~~l~~~i~~~l~~lL~-Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
++.+.+.++..|+.++..|+.++.++-.....+ +.-+-.+..|.++++|+ ++++.|+..|+.+|+.++.... +
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~----e 134 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS----E 134 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH----H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH----H
Confidence 456667789999999999999999885432211 22233457899999996 5668999999999999864210 0
Q ss_pred ccccccc-hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHH----Hhhhhhhhhhcc------------
Q 002304 227 KNRIDCS-DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKK----VLGATKEKKFHS------------ 289 (939)
Q Consensus 227 ~~~i~lv-ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kk----lm~~lk~kr~~~------------ 289 (939)
. ....+ ..++..|+.+|.+++..||..|+++||++...+++.-...+... ++.-++......
T Consensus 135 ~-~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 135 Q-TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp H-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred H-HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 0 01111 24788999999999999999999999999654443221111111 222111100000
Q ss_pred --ccchh---hhh-hhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHH
Q 002304 290 --LGAAE---CFE-ISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQ 358 (939)
Q Consensus 290 --~l~~d---~~~-l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~ 358 (939)
.+... ... ....+++++|+..|.+++.+||..|+.+|+.++...++.. ..+++.|+.++++++..|+..
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 00000 000 0125678899999999999999999999999987554432 235799999999999999999
Q ss_pred HHHHHhhhhhcc----cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHH-----HHHHHHhhccC-cc
Q 002304 359 ALETMHIMVTCE----HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLF-----IDGLLENLKIY-PQ 428 (939)
Q Consensus 359 Aa~ALgkI~~~~----~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~-----l~~LL~~L~~~-pe 428 (939)
|+.+||.|.... ...+....++.|..+|.+++++||+.+..+|+.+.-.+....+.+ +..|+..+..- ++
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 373 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHH
Confidence 999999997521 111234567788899999999999999999999876655544433 34455555443 34
Q ss_pred chHHHHHHHHHhhc
Q 002304 429 DEADVFSVLFFIGR 442 (939)
Q Consensus 429 Dr~~I~~aL~~LG~ 442 (939)
.++.+.+||.++..
T Consensus 374 v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 374 TQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 58889999998854
No 37
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.39 E-value=5.9e-12 Score=154.03 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=81.9
Q ss_pred chHHHhhc-cCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHH-HhcCCCHHHHHHHHHHHhhhhhcccccchhhHHH
Q 002304 303 AAGTFVHG-FEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVD-MLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMH 380 (939)
Q Consensus 303 a~gaLI~~-LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lvd-mLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~ 380 (939)
++..|+|- .+|.+..||++|+.+||.+....++ +++.++. +.++.++.||..|+.|||.++. |. -..++++
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e----~v~rlv~~L~~~~d~~VR~gAalALGli~a-Gn--~~~~aid 650 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACA-GK--GLQSAID 650 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS----SHHHHTTTGGGCSCHHHHHHHHHHHHHHTS-SS--CCHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CC--CcHHHHH
Confidence 44444443 3577888999999999987655543 3444554 5567899999999999998874 21 1356888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhccCCchhH----HHHHHHHHHHhhc
Q 002304 381 MFLGTLVDNSELVRCAARKILKLVKTPKLEF----FRLFIDGLLENLK 424 (939)
Q Consensus 381 ~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~----l~~~l~~LL~~L~ 424 (939)
.|..++.|.+.+||++|..+||.++..+.+. +..+++.|..-+.
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 8888999999999999999999988765444 4445555555443
No 38
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.39 E-value=1.4e-11 Score=150.78 Aligned_cols=305 Identities=12% Similarity=0.035 Sum_probs=201.7
Q ss_pred hhHHHHHHhhhc---CCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCC--------chHHHHHHHHHHH
Q 002304 147 HLLFTVCLGLTK---DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHE--------DCVRCAAVRVVSE 215 (939)
Q Consensus 147 ~~L~~~L~~ll~---D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd--------~~VR~aAV~aLg~ 215 (939)
++-+..+.+++. ..++.+|..|+-|||-++.... .+.+..+...|.+++ +.||..|+-+||.
T Consensus 391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-------~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-------RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-------HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 356788888887 6789999999999998875432 124667777787666 7899999999998
Q ss_pred hcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc--cCCcHHHHHHHhhHHHhhhhhhhhhccc-cc
Q 002304 216 WGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV--GMISEIVLLQTLSKKVLGATKEKKFHSL-GA 292 (939)
Q Consensus 216 lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i--~~vs~~~LlqtL~kklm~~lk~kr~~~~-l~ 292 (939)
..-- + --.++++.|...+.|.+..+|..||-+||.+ |.-..+.+...| +.+++...++-.+.. ++
T Consensus 464 a~~G---S--------~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL-~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 464 AAMG---S--------ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMF-TYSQETQHGNITRGLAVG 531 (963)
T ss_dssp HSTT---C--------CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHH-HHHHHCSCHHHHHHHHHH
T ss_pred HhcC---C--------CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHH-HHHhccCcHHHHHHHHHH
Confidence 5320 0 0157889999999999999999999999987 554444443322 222221111000000 00
Q ss_pred hhhhhhhhhcchHHHhhccC-CCcHHHHHHHHHHHH--hccccchhhHHHHHH-HHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 293 AECFEISASAAAGTFVHGFE-DEFYEVRKSACSSLG--SLVILSEKFAGEALN-LLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 293 ~d~~~l~~s~a~gaLI~~Le-DE~~eVR~aAaeALG--kL~~~s~~fA~~ALd-~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
-+.+.+....++++++..|. |+++.||..|+.++| ..|..+ ..+++ .|--+.+|.++.||..|+.+||.|..
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn----~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN----NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred HHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence 01122345678899998875 799999999998885 344434 36776 44456789999999999999999874
Q ss_pred cccccchhhHHHHHHH-hcCCCCHHHHHHHHHHHhhccCCch--hHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccc
Q 002304 369 CEHLNLEDKHMHMFLG-TLVDNSELVRCAARKILKLVKTPKL--EFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHG 445 (939)
Q Consensus 369 ~~~i~l~E~aL~~LL~-~L~D~~~dVR~aA~~aLg~i~l~~~--~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~ 445 (939)
.. ++.++.++. ++++.++.||.+++.+||.+...+. ..++ .+..|.. +..+.+|+.+..+|+.||..+.
T Consensus 608 g~-----~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid-~L~~L~~--D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 608 RD-----YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAID-VLDPLTK--DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp SS-----CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHH-HHHHHHT--CSSHHHHHHHHHHHHHHSTTCC
T ss_pred CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHH-HHHHHcc--CCCHHHHHHHHHHHHHHhcCCc
Confidence 22 346777777 4568999999999999999865433 3322 3334433 3444569999999999997765
Q ss_pred cc----hHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHH-Hhhccc
Q 002304 446 NF----AACIIKEVCQEIEPDSDDKLGFDNARVAAFLVL-AISVPL 486 (939)
Q Consensus 446 ~l----v~~lv~~Ll~~i~p~~~~e~~~dd~~yiA~Lil-i~~A~~ 486 (939)
+. +..+...|.+.+. +...+ .+..+.+++-. ++.|+.
T Consensus 680 na~~~rva~~l~~L~~~~~---dk~~d-~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 680 EKLNPQVADINKNFLSVIT---NKHQE-GLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp TTTCTTHHHHHHHHHHHHH---CSSSC-HHHHHHHHHHHHHHTTGG
T ss_pred cccchHHHHHHHHHHHHHh---ccccc-HHHHHHHHHHHHHHhcCC
Confidence 66 4444444544321 10100 13455555554 555554
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.38 E-value=1.2e-11 Score=145.38 Aligned_cols=268 Identities=12% Similarity=0.014 Sum_probs=194.7
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhh--hhhHHHHHHHhhCC-CCchHHHHHHHHHHHhcchhhhhc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDL--IQGCCCRAVELLRD-HEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l--~~~i~~~l~~lL~D-dd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
..+..+.++++++++.||..|+.+|+.+...... ...+ ..++++.++++|++ +++.||..|+.+|..+.......
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~-~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~- 91 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL- 91 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTH-HHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH-
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChh-HHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-
Confidence 4578888899999999999999999999865421 1111 13567889999975 48999999999999887531100
Q ss_pred ccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
..+ .-..++..|+.++++++..||..|+++|+++....++.. -.+...+++
T Consensus 92 ---~~i-~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-------------------------~~v~~~g~i 142 (644)
T 2z6h_A 92 ---LAI-FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-------------------------MAVRLAGGL 142 (644)
T ss_dssp ---HHH-HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-------------------------HHHHHTTHH
T ss_pred ---HHH-HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-------------------------HHHHHCCCh
Confidence 000 013578899999999999999999999999853211110 011246789
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHhcCCC-HHHHHHHHHHHhhhhhccc---ccch
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVILSEKF-----AGEALNLLVDMLNDDS-VTVRLQALETMHIMVTCEH---LNLE 375 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~f-----A~~ALd~LvdmLnDe~-~~VRl~Aa~ALgkI~~~~~---i~l~ 375 (939)
+.|+..|.++++.+|..|+.+|+.++..+++. ...+++.|+.++++.+ +.++..|+.+|+.++.... .-..
T Consensus 143 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~ 222 (644)
T 2z6h_A 143 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222 (644)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999999999999999999988544332 2457899999998874 7888999999999874211 1123
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC--chhHHHHHHHHHHHhhcc-CccchHHHHHHHHHhhccccc
Q 002304 376 DKHMHMFLGTLVDNSELVRCAARKILKLVKTP--KLEFFRLFIDGLLENLKI-YPQDEADVFSVLFFIGRSHGN 446 (939)
Q Consensus 376 E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~--~~~~l~~~l~~LL~~L~~-~peDr~~I~~aL~~LG~~H~~ 446 (939)
...++.|+.+|++.++.+|+.+..+|..+... .......++..|+..|.. .++.+..+.++|..|...+++
T Consensus 223 ~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~ 296 (644)
T 2z6h_A 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 296 (644)
T ss_dssp TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 35789999999999999999999998776321 122233467777776664 344588899999999876533
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.38 E-value=1e-11 Score=150.27 Aligned_cols=294 Identities=14% Similarity=0.033 Sum_probs=198.4
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhh--hhhHHHHHHHhhCC-CCchHHHHHHHHHHHhcchhhhh
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDL--IQGCCCRAVELLRD-HEDCVRCAAVRVVSEWGKMLIAC 223 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l--~~~i~~~l~~lL~D-dd~~VR~aAV~aLg~lg~~~~~~ 223 (939)
...+..+.+++.++|+.||+.|+.+|+.+...... ...+ ..++++.++++|++ +++.||..|+.+|..+.......
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~-~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHH-HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChh-HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 45678888899999999999999999999764210 0011 13578889999964 59999999999999876531100
Q ss_pred cccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHH---HH-HHHhhHHHhhhhhhhh--h-------ccc
Q 002304 224 IDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEI---VL-LQTLSKKVLGATKEKK--F-------HSL 290 (939)
Q Consensus 224 ~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~---~L-lqtL~kklm~~lk~kr--~-------~~~ 290 (939)
..+. ...++..|+.+|++.+..||..|+++|+++.....+ .+ ....-..++..++... . ...
T Consensus 228 ----~~i~-~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~ 302 (780)
T 2z6g_A 228 ----LAIF-KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 302 (780)
T ss_dssp ----HHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred ----HHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0000 135788999999999999999999999999432111 11 1111112222222110 0 000
Q ss_pred cc--hh--hhhhhhhcchHHHhhccCCCcHHHH-HHHHHHHHhccccc---hhh-HHHHHHHHHHHhcCCCHHHHHHHHH
Q 002304 291 GA--AE--CFEISASAAAGTFVHGFEDEFYEVR-KSACSSLGSLVILS---EKF-AGEALNLLVDMLNDDSVTVRLQALE 361 (939)
Q Consensus 291 l~--~d--~~~l~~s~a~gaLI~~LeDE~~eVR-~aAaeALGkL~~~s---~~f-A~~ALd~LvdmLnDe~~~VRl~Aa~ 361 (939)
++ .+ +..+...++++.|+..|++...+++ ..|+.+|..+.... ..+ ...+++.|+.++.+.+..++..|+.
T Consensus 303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~ 382 (780)
T 2z6g_A 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 382 (780)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHH
T ss_pred HhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHH
Confidence 11 01 1234566788899999987766554 46777777776421 111 1346899999999999999999999
Q ss_pred HHhhhhhcc-cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHH-----HHHHHHHHhhcc--Cc-cchHH
Q 002304 362 TMHIMVTCE-HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFR-----LFIDGLLENLKI--YP-QDEAD 432 (939)
Q Consensus 362 ALgkI~~~~-~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~-----~~l~~LL~~L~~--~p-eDr~~ 432 (939)
+|++++... .....+..++.|+.+|++++++||..+..+|+.+...+....+ ..+..|+..|.. .+ +.+..
T Consensus 383 ~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~ 462 (780)
T 2z6g_A 383 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 462 (780)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHH
Confidence 999998522 1222357899999999999999999999999998765432211 145566666654 22 55888
Q ss_pred HHHHHHHhhccccc
Q 002304 433 VFSVLFFIGRSHGN 446 (939)
Q Consensus 433 I~~aL~~LG~~H~~ 446 (939)
+.++|+.|...|++
T Consensus 463 Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 463 AICALRHLTSRHQD 476 (780)
T ss_dssp HHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCch
Confidence 99999999876654
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.38 E-value=2e-11 Score=140.44 Aligned_cols=264 Identities=13% Similarity=0.095 Sum_probs=187.1
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccccc-chhhhhhHHHHHHHhhCCCCch-----HHHHHHHHHHHhcchhh
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFE-DVDLIQGCCCRAVELLRDHEDC-----VRCAAVRVVSEWGKMLI 221 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~-~~~l~~~i~~~l~~lL~Ddd~~-----VR~aAV~aLg~lg~~~~ 221 (939)
..++.|..+++++++.||..|+.+|+.|....... +.-+..+.++.++.+|.+.+.. +...|+.+|..+....
T Consensus 162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~- 240 (529)
T 3tpo_A 162 GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK- 240 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC-
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc-
Confidence 35678889999999999999999999997543100 1112234578899999876643 4556666666554311
Q ss_pred hhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhh
Q 002304 222 ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISAS 301 (939)
Q Consensus 222 ~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s 301 (939)
+.......+..++..|..++++.+..|+..|+++|+.+...+.+.... +...
T Consensus 241 ---~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~-------------------------v~~~ 292 (529)
T 3tpo_A 241 ---NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEM-------------------------VVKK 292 (529)
T ss_dssp ---TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH-------------------------HHTT
T ss_pred ---cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHH-------------------------HHhc
Confidence 111122233567889999999999999999999999996655443211 1257
Q ss_pred cchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc----cc
Q 002304 302 AAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCE----HL 372 (939)
Q Consensus 302 ~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~----~i 372 (939)
++++.|+..|.+++..|+..|+.+||.+...++... ..+++.|+.+++++++.||..|+.+|++|+... ..
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence 889999999999999999999999999986555432 346789999999999999999999999998521 11
Q ss_pred cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccC-CchhHHHH-----HHHHHHHhhccC-ccchHHHHHHHHHh
Q 002304 373 NLEDKHMHMFLGTLVDNSELVRCAARKILKLVKT-PKLEFFRL-----FIDGLLENLKIY-PQDEADVFSVLFFI 440 (939)
Q Consensus 373 ~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l-~~~~~l~~-----~l~~LL~~L~~~-peDr~~I~~aL~~L 440 (939)
......++.++.+|.+.+.+||++|..+|+.+-. .+.+.... ++..|+..|+.- ++.+..+.++|..|
T Consensus 373 v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1234578999999999999999999999987532 23332222 355566666532 22244555555554
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.37 E-value=3.4e-10 Score=129.98 Aligned_cols=226 Identities=12% Similarity=0.063 Sum_probs=169.4
Q ss_pred HHHHHHhhhcCCCH-----HHHHHHHHHHHhhhhcccc-cchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhh
Q 002304 149 LFTVCLGLTKDPYP-----YVREAALNGLVCLLKHVVF-EDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 149 L~~~L~~ll~D~Dp-----~VRraAl~AL~~L~~~~~~-~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~ 222 (939)
.+..+..++++++. .+.+.|+.+|..+...... .....+.++.+.+.++|+++++.||..|+.+|+.+......
T Consensus 186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~ 265 (510)
T 3ul1_B 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265 (510)
T ss_dssp CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh
Confidence 35677778877653 4678888888888653221 12233456789999999999999999999999998753110
Q ss_pred hcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhc
Q 002304 223 CIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASA 302 (939)
Q Consensus 223 ~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~ 302 (939)
..+.-.-..++..|+.++.+.++.|+..|+.+||.+...++..-.. +++.+
T Consensus 266 ----~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~-------------------------i~~~g 316 (510)
T 3ul1_B 266 ----RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK-------------------------VIDAG 316 (510)
T ss_dssp ----HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH-------------------------HHHTT
T ss_pred ----hHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHH-------------------------Hhhcc
Confidence 0000001235678999999999999999999999996544433211 23567
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccccc----
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLN---- 373 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~---- 373 (939)
+++.|+..|.+++.+||+.|+.+|+.++..++... ..+++.|+.++.+.+..||..|+.||+++...+...
T Consensus 317 ~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~ 396 (510)
T 3ul1_B 317 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396 (510)
T ss_dssp GGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 88899999999999999999999999987655532 347899999999999999999999999997532111
Q ss_pred -chhhHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 374 -LEDKHMHMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 374 -l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
.....++.|+.+|+..+++++..+..+|..
T Consensus 397 L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~n 427 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLSAKDTKIIQVILDAISN 427 (510)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 234578999999999999999888776655
No 43
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.36 E-value=3.2e-11 Score=135.54 Aligned_cols=291 Identities=10% Similarity=0.025 Sum_probs=196.4
Q ss_pred hHHHHHHhhhc-CCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 148 LLFTVCLGLTK-DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 148 ~L~~~L~~ll~-D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
..+..+.+++. ++|+.+|+.|+.+|..+.........-...+..+.++++|+++++.||..|+.+|+.+.....
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----- 133 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE----- 133 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-----
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-----
Confidence 45566666665 469999999999999986542111111123467899999999999999999999999865210
Q ss_pred cccccc-chhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhH----HHhhhhhhhhh----------cccc
Q 002304 227 KNRIDC-SDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSK----KVLGATKEKKF----------HSLG 291 (939)
Q Consensus 227 ~~~i~l-vddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~k----klm~~lk~kr~----------~~~l 291 (939)
+.+..+ -..++..|+.++.++++.||..|+.+|+.+....++.-...... .++..++.... ...+
T Consensus 134 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 000011 14578899999999999999999999998843222211111111 11111211100 0001
Q ss_pred ch---hhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhh--HHHHHHHHHHHhcCCCHHHHHHHHHHHhhh
Q 002304 292 AA---ECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKF--AGEALNLLVDMLNDDSVTVRLQALETMHIM 366 (939)
Q Consensus 292 ~~---d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~f--A~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI 366 (939)
+. .+-.+...+++++++..|.|.+.+||..|+.+|+.+....+.. ...+++.|+.+++++++.||..|+.+|+++
T Consensus 214 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 10 1123456789999999999999999999999999987543221 257899999999999999999999999999
Q ss_pred hhccc----ccchhhHHHHHHHhcCC--CCHHHHHHHHHHHhhccCCchh--HH------HHHHHHHHHhhccCc--cch
Q 002304 367 VTCEH----LNLEDKHMHMFLGTLVD--NSELVRCAARKILKLVKTPKLE--FF------RLFIDGLLENLKIYP--QDE 430 (939)
Q Consensus 367 ~~~~~----i~l~E~aL~~LL~~L~D--~~~dVR~aA~~aLg~i~l~~~~--~l------~~~l~~LL~~L~~~p--eDr 430 (939)
+.... .-.....++.++.+|.+ ++++||..+..+|+.+...+.. .. ...+..|+..|.... +.+
T Consensus 294 ~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~ 373 (529)
T 1jdh_A 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373 (529)
T ss_dssp TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred hcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHH
Confidence 85211 11223578999999975 4589999999999987543211 00 123556666666432 457
Q ss_pred HHHHHHHHHhhcc
Q 002304 431 ADVFSVLFFIGRS 443 (939)
Q Consensus 431 ~~I~~aL~~LG~~ 443 (939)
+.+.++|.++...
T Consensus 374 ~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 374 KATVGLIRNLALC 386 (529)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcC
Confidence 8888999999753
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=3.7e-11 Score=124.05 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=139.6
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhhhhc-ccccchhhhhhHHHHHHHhhC-CCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304 152 VCLGLTKDPYPYVREAALNGLVCLLKH-VVFEDVDLIQGCCCRAVELLR-DHEDCVRCAAVRVVSEWGKMLIACIDEKNR 229 (939)
Q Consensus 152 ~L~~ll~D~Dp~VRraAl~AL~~L~~~-~~~~~~~l~~~i~~~l~~lL~-Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~ 229 (939)
.+.+.++|.+..+|++|+.+|..+.+. +...... ...+.+.+..++. |.+..||..|+.+++.++...... -
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-----~ 92 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-----F 92 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-----G
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-----H
Confidence 356778999999999999999998764 2212212 2567888899994 999999999999999998654211 0
Q ss_pred cccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHh
Q 002304 230 IDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFV 308 (939)
Q Consensus 230 i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI 308 (939)
-+.+...+..|...+.|++..||.+|+.+|..+.. .+. ...++.+.
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---------------------------------~~ll~~l~ 139 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---------------------------------EAQQESIV 139 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---------------------------------HHHHHHHH
Confidence 12345678899999999999999999999999843 221 12356678
Q ss_pred hccCCCcHHHHHHHHHHHHhcccc-ch-----hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 309 HGFEDEFYEVRKSACSSLGSLVIL-SE-----KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 309 ~~LeDE~~eVR~aAaeALGkL~~~-s~-----~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
.+|+|.+|.||..++..|+.+... .+ ......++.|..+++|.++.||..|+.+|+.|+.
T Consensus 140 ~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 899999999999999999995432 12 2336789999999999999999999999999883
No 45
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.35 E-value=1.2e-11 Score=154.76 Aligned_cols=280 Identities=14% Similarity=0.064 Sum_probs=189.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccc-cchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVF-EDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~-~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
+..++.-+.++|+.+|+.|...|.+.-..... .+......+.+.+.+.|.|+++.||.+|+.+|+.+......
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~------ 81 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE------ 81 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH------
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH------
Confidence 45566668999999999999999876543211 12223345778899999999999999999999988753211
Q ss_pred ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHH
Q 002304 229 RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTF 307 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaL 307 (939)
......+..|+..+.|++..||..|+.+|+.+.. .++..- .... .....+..++.+
T Consensus 82 --~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~----~~~~-----------------~~~~~~~llp~L 138 (1230)
T 1u6g_C 82 --YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS----GSAL-----------------AANVCKKITGRL 138 (1230)
T ss_dssp --HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---------CCT-----------------HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc----ccch-----------------HHHHHHHHHHHH
Confidence 1235678899999999999999999999999842 222100 0000 000123467788
Q ss_pred hhccCC-CcHHHHHHHHHHHHhccccc----hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHH
Q 002304 308 VHGFED-EFYEVRKSACSSLGSLVILS----EKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMF 382 (939)
Q Consensus 308 I~~LeD-E~~eVR~aAaeALGkL~~~s----~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~L 382 (939)
+.++.| +++.||..|+++|+++.... ..+....++.|...++|++..||..|+.+|+.++..-.-.+-+..++.+
T Consensus 139 ~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l 218 (1230)
T 1u6g_C 139 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHL 218 (1230)
T ss_dssp HHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHH
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888885 88999999999998876311 1234678899999999999999999999999998532222234568888
Q ss_pred HHhcCCCC-HHHHHHHHHHHhhccC--Cch--hHHHHHHHHHHHhhc-cCccchHHHHHHHHHhhcccccc----hHHHH
Q 002304 383 LGTLVDNS-ELVRCAARKILKLVKT--PKL--EFFRLFIDGLLENLK-IYPQDEADVFSVLFFIGRSHGNF----AACII 452 (939)
Q Consensus 383 L~~L~D~~-~dVR~aA~~aLg~i~l--~~~--~~l~~~l~~LL~~L~-~~peDr~~I~~aL~~LG~~H~~l----v~~lv 452 (939)
+..|.+.. +.+|..+..+++.+.. +.. ..+..++..++..+. ..++.|..+.++++.+.+..++- ...++
T Consensus 219 ~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li 298 (1230)
T 1u6g_C 219 LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII 298 (1230)
T ss_dssp HHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHH
Confidence 88876543 5788888887776531 110 112335566666553 44566889999999988765553 34455
Q ss_pred HHHhhh
Q 002304 453 KEVCQE 458 (939)
Q Consensus 453 ~~Ll~~ 458 (939)
+.+++.
T Consensus 299 ~~ll~~ 304 (1230)
T 1u6g_C 299 NICLKY 304 (1230)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 555443
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.35 E-value=9.3e-11 Score=134.91 Aligned_cols=226 Identities=12% Similarity=0.060 Sum_probs=169.0
Q ss_pred HHHHHHhhhcCCCH-----HHHHHHHHHHHhhhhcccc-cchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhh
Q 002304 149 LFTVCLGLTKDPYP-----YVREAALNGLVCLLKHVVF-EDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 149 L~~~L~~ll~D~Dp-----~VRraAl~AL~~L~~~~~~-~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~ 222 (939)
.+..+..++.+++. .+.+.|+.+|..+...... .....+.++.+.+.++|+++++.|+..|+.+|+.+......
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~ 284 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 284 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh
Confidence 35677788877653 4677888888887643211 12233466789999999999999999999999988753110
Q ss_pred hcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhc
Q 002304 223 CIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASA 302 (939)
Q Consensus 223 ~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~ 302 (939)
..+.-.-..++..|+.++.+.++.|+..|+.+||.+...++..-. .+++.+
T Consensus 285 ----~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~-------------------------~i~~~g 335 (529)
T 3tpo_A 285 ----RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ-------------------------KVIDAG 335 (529)
T ss_dssp ----HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH-------------------------HHHHTT
T ss_pred ----hHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH-------------------------HHhhcc
Confidence 000000134677899999999999999999999999654433211 123577
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccccc----
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLN---- 373 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~---- 373 (939)
+++.|+..|.+++.+||+.|+.+|+.++..++... ..+++.|+.++.+++..||..|+.||+++...+...
T Consensus 336 ~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~ 415 (529)
T 3tpo_A 336 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVY 415 (529)
T ss_dssp GGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 88999999999999999999999999987655532 347899999999999999999999999997533111
Q ss_pred -chhhHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 374 -LEDKHMHMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 374 -l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
.....++.|+.+|+..+++++..+..+|..
T Consensus 416 l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~n 446 (529)
T 3tpo_A 416 LVHCGIIEPLMNLLSAKDTKIIQVILDAISN 446 (529)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 223468999999999999999887766554
No 47
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.35 E-value=2.4e-11 Score=143.17 Aligned_cols=266 Identities=11% Similarity=0.014 Sum_probs=193.8
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
+.+...+.+++.+++..+|+...-++..+.+... .+..-....+.+-|+|+++.||..|+++||.++..
T Consensus 69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~----e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~------- 137 (618)
T 1w63_A 69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQ----DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS------- 137 (618)
T ss_dssp GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------
T ss_pred cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------
Confidence 4455556677889999999999999998876432 22223456788889999999999999999999852
Q ss_pred ccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHH
Q 002304 227 KNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGT 306 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ga 306 (939)
.++.+.+..|...++|+++.||+.|+.+++++....++.+ ....+.
T Consensus 138 ----~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v------------------------------~~~~~~ 183 (618)
T 1w63_A 138 ----EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM------------------------------EMFLPA 183 (618)
T ss_dssp ----HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG------------------------------GGGGGG
T ss_pred ----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH------------------------------HHHHHH
Confidence 2345678889999999999999999999999853222221 134456
Q ss_pred HhhccCCCcHHHHHHHHHHHHhccccchhh---HHHHHHHHHHHhcC---------------CCHHHHHHHHHHHhhhhh
Q 002304 307 FVHGFEDEFYEVRKSACSSLGSLVILSEKF---AGEALNLLVDMLND---------------DSVTVRLQALETMHIMVT 368 (939)
Q Consensus 307 LI~~LeDE~~eVR~aAaeALGkL~~~s~~f---A~~ALd~LvdmLnD---------------e~~~VRl~Aa~ALgkI~~ 368 (939)
+..+|.|.+..|+.+|+.+|++++..+++. ..+.++.|+.+|++ .++..+..+++.|+.++.
T Consensus 184 l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 184 TKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp TTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 677899999999999999999999766653 23456667776654 589999999999999985
Q ss_pred cccccchhhHHHHHHHh------cCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhc-cCccchHHHHHHHHHhh
Q 002304 369 CEHLNLEDKHMHMFLGT------LVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLK-IYPQDEADVFSVLFFIG 441 (939)
Q Consensus 369 ~~~i~l~E~aL~~LL~~------L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~-~~peDr~~I~~aL~~LG 441 (939)
.. -...+...+.|..+ +++.+..|.-++..++..+.... .....+++.|...|. .+|..|..+.++|..++
T Consensus 264 ~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~-~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 264 ND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES-GLRVLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp TC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH-HHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 22 11222333333333 34456678888888887765432 223345666666554 56777999999999999
Q ss_pred cccccchHHHHHHHhhhc
Q 002304 442 RSHGNFAACIIKEVCQEI 459 (939)
Q Consensus 442 ~~H~~lv~~lv~~Ll~~i 459 (939)
+.||+++.+..+.++...
T Consensus 342 ~~~p~~~~~~~~~i~~~l 359 (618)
T 1w63_A 342 QTDHNAVQRHRSTIVDCL 359 (618)
T ss_dssp HHHHHHHGGGHHHHHHGG
T ss_pred hhCHHHHHHHHHHHHHHc
Confidence 999999988888887763
No 48
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.34 E-value=7.3e-13 Score=140.41 Aligned_cols=195 Identities=22% Similarity=0.162 Sum_probs=131.1
Q ss_pred hhHHHHHH-------HhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhh
Q 002304 114 TVDDRFFV-------SLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDL 186 (939)
Q Consensus 114 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l 186 (939)
...+++|. .+|-.....+|.+..++. .. ..+..+++|+++.||.+|+.+|. .
T Consensus 42 ~ri~~~~~~~p~l~~~ll~d~~~~VR~~AA~~l-----~~----~~l~~L~~D~~~~VR~~aA~~L~------~------ 100 (244)
T 1lrv_A 42 RQIDRFFRNNPHLAVQYLADPFWERRAIAVRYS-----PV----EALTPLIRDSDEVVRRAVAYRLP------R------ 100 (244)
T ss_dssp HHHHHHHHHCGGGGGGGTTCSSHHHHHHHHTTS-----CG----GGGGGGTTCSSHHHHHHHHTTSC------S------
T ss_pred HHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHhC-----CH----HHHHHHccCcCHHHHHHHHHHCC------H------
Confidence 55566663 456666677888888853 11 24678899999999999998652 1
Q ss_pred hhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCc
Q 002304 187 IQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMIS 266 (939)
Q Consensus 187 ~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs 266 (939)
+.+..+++|+++.||..|+..+ .. ..|..+++|+++.||.+||..++
T Consensus 101 -----~~L~~ll~D~d~~VR~~aA~~l---~~-------------------~~L~~L~~D~d~~VR~~aA~~l~------ 147 (244)
T 1lrv_A 101 -----EQLSALMFDEDREVRITVADRL---PL-------------------EQLEQMAADRDYLVRAYVVQRIP------ 147 (244)
T ss_dssp -----GGGGGTTTCSCHHHHHHHHHHS---CT-------------------GGGGGGTTCSSHHHHHHHHHHSC------
T ss_pred -----HHHHHHHcCCCHHHHHHHHHhC---CH-------------------HHHHHHHcCCCHHHHHHHHHhcC------
Confidence 2366789999999999999854 21 12345789999999999998643
Q ss_pred HHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 002304 267 EIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVD 346 (939)
Q Consensus 267 ~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lvd 346 (939)
.+.+...+.. .....| ......-..+.|..+++|++|+||.+|+.+| . .+.|..
T Consensus 148 ~~~l~~l~~D----~d~~VR---------~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l---~----------~~~L~~ 201 (244)
T 1lrv_A 148 PGRLFRFMRD----EDRQVR---------KLVAKRLPEESLGLMTQDPEPEVRRIVASRL---R----------GDDLLE 201 (244)
T ss_dssp GGGGGGTTTC----SCHHHH---------HHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC---C----------GGGGGG
T ss_pred HHHHHHHHcC----CCHHHH---------HHHHHcCCHHHHHHHHcCCCHHHHHHHHHhC---C----------HHHHHH
Confidence 2222111100 000000 0111111223566788999999999999874 2 245888
Q ss_pred HhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 347 MLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 347 mLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
+++|++|.||..++++|+. +.+.. |+|+++.||+++...||.
T Consensus 202 Ll~D~d~~VR~~aa~~l~~--------------~~L~~-L~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHASL--------------EALRE-LDEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp GGGCSSHHHHHHHHHHSCH--------------HHHHH-CCCCCHHHHHHHHCCC--
T ss_pred HHcCCCHHHHHHHHHcCCH--------------HHHHH-ccCCCHHHHHHHHHHhCC
Confidence 8999999999999999761 23444 599999999999877653
No 49
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.32 E-value=1.1e-10 Score=137.26 Aligned_cols=267 Identities=12% Similarity=0.021 Sum_probs=194.1
Q ss_pred hHHHHHHhhhcC-CCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 148 LLFTVCLGLTKD-PYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 148 ~L~~~L~~ll~D-~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
..+..+.+.+.+ +++.||+.|+.+|..+.........-...+..+.++++|+++++.||..|+.+|+.+.....
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~----- 130 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE----- 130 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST-----
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc-----
Confidence 456666776665 59999999999999886532110111122467899999999999999999999999875310
Q ss_pred ccccccc-hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchH
Q 002304 227 KNRIDCS-DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAG 305 (939)
Q Consensus 227 ~~~i~lv-ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~g 305 (939)
..+...+ ..++..|+..+++++++++..|+.+|+.+....++.- ..+...++++
T Consensus 131 ~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~-------------------------~~i~~~g~v~ 185 (644)
T 2z6h_A 131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK-------------------------LIILASGGPQ 185 (644)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH-------------------------HHHHHTTHHH
T ss_pred hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHH-------------------------HHHHHcCChH
Confidence 0010111 4578899999999999999999999999864222221 0122567888
Q ss_pred HHhhccCCCc-HHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc-cccchhhH
Q 002304 306 TFVHGFEDEF-YEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCE-HLNLEDKH 378 (939)
Q Consensus 306 aLI~~LeDE~-~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~-~i~l~E~a 378 (939)
.|++.|++.. ..++..|+.+|+.++. +++.. ..+++.|+.++++.+..||..|+.+|++++... .....+..
T Consensus 186 ~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 264 (644)
T 2z6h_A 186 ALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL 264 (644)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhH
Confidence 9999998764 5788899999988875 22221 347899999999999999999999999998522 22233578
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHH-----HHHHHHHhhccC---ccchHHHHHHHHHhhcccc
Q 002304 379 MHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRL-----FIDGLLENLKIY---PQDEADVFSVLFFIGRSHG 445 (939)
Q Consensus 379 L~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~-----~l~~LL~~L~~~---peDr~~I~~aL~~LG~~H~ 445 (939)
++.|+.+|.+++++||..+..+|+.+...+....+. ++..|+..|... ++.+..+.++|+.|...|+
T Consensus 265 i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999998876544322111 456666666543 3558889999999987665
No 50
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.27 E-value=7.7e-10 Score=138.61 Aligned_cols=283 Identities=16% Similarity=0.147 Sum_probs=195.9
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccc-------------------cchhhhhhHHHHHHHhhCCCCchHHHH
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVF-------------------EDVDLIQGCCCRAVELLRDHEDCVRCA 208 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~-------------------~~~~l~~~i~~~l~~lL~Ddd~~VR~a 208 (939)
.++..+...++|+++.||.+|+.+|+.+...... .-....+.+++.+.+.++|+++.||..
T Consensus 374 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~ 453 (1230)
T 1u6g_C 374 TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQC 453 (1230)
T ss_dssp TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHH
Confidence 3455667788999999999999999887642100 001234556777778899999999999
Q ss_pred HHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCH--HHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhh
Q 002304 209 AVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRM--EVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEK 285 (939)
Q Consensus 209 AV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~--~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~k 285 (939)
++.+|+.+....... -....+..+..|...++|+++ .||.+|+..++.+ ...+++.+.+.
T Consensus 454 ~~~~L~~l~~~~~~~-----l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~------------ 516 (1230)
T 1u6g_C 454 CFNMLTELVNVLPGA-----LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPH------------ 516 (1230)
T ss_dssp HHHHHHHHHHHSTTT-----TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHH------------
T ss_pred HHHHHHHHHHHchhh-----hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhH------------
Confidence 999999887642110 112346788899999999986 9999999999987 32332211111
Q ss_pred hhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccc-----------cchhhHHHHHHHHHHHh--cCCC
Q 002304 286 KFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVI-----------LSEKFAGEALNLLVDML--NDDS 352 (939)
Q Consensus 286 r~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~-----------~s~~fA~~ALd~LvdmL--nDe~ 352 (939)
-....+.++.+++|.++.||.+|+.+++.+.. ....+....++.++..+ +|++
T Consensus 517 --------------l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~ 582 (1230)
T 1u6g_C 517 --------------VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 582 (1230)
T ss_dssp --------------HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSC
T ss_pred --------------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCC
Confidence 13467788899999999999999999987652 11245578899999999 8999
Q ss_pred HHHHHHHHHHHhhhhhcccccch---hhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC-----chhHHHHHHHHHHHhhc
Q 002304 353 VTVRLQALETMHIMVTCEHLNLE---DKHMHMFLGTLVDNSELVRCAARKILKLVKTP-----KLEFFRLFIDGLLENLK 424 (939)
Q Consensus 353 ~~VRl~Aa~ALgkI~~~~~i~l~---E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~-----~~~~l~~~l~~LL~~L~ 424 (939)
..||..|+.+||.|.....-.+. ...++.+...|.++ ..|..+..+++.+... -...+..++..|...+.
T Consensus 583 ~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~ 660 (1230)
T 1u6g_C 583 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999853211222 45667777777765 4788899999876532 13344556666666665
Q ss_pred cCc-cchHHHHHHHHHhhcccccc-hHHHHHHHhhhcCCCC
Q 002304 425 IYP-QDEADVFSVLFFIGRSHGNF-AACIIKEVCQEIEPDS 463 (939)
Q Consensus 425 ~~p-eDr~~I~~aL~~LG~~H~~l-v~~lv~~Ll~~i~p~~ 463 (939)
+.. ..|..+..|++.+.+.++.. ....+..++...-|..
T Consensus 661 ~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll 701 (1230)
T 1u6g_C 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLI 701 (1230)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGS
T ss_pred hCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhc
Confidence 432 34788899999998777532 2334455554433443
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.27 E-value=9.8e-11 Score=141.62 Aligned_cols=284 Identities=13% Similarity=0.063 Sum_probs=176.1
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNR 229 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~ 229 (939)
+..+...+.++++.+|++|+..+....+. .+..+.++.++.+|.++++.||..|+.+|+.++..... ...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~----~~~ 186 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS----RHA 186 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHH----HHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChh----HHH
Confidence 45667778899999999999988766332 23356789999999999999999999999998763210 001
Q ss_pred cccchhHHHHHHHhhc-CCCHHHHHHHHHHHhcccCCcHHHHHHHhhHH----Hhhhhhhhhh---------ccccchh-
Q 002304 230 IDCSDVVFIQLCSMIR-DMRMEVRVEAFNALGKVGMISEIVLLQTLSKK----VLGATKEKKF---------HSLGAAE- 294 (939)
Q Consensus 230 i~lvddaf~aLc~aL~-D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kk----lm~~lk~kr~---------~~~l~~d- 294 (939)
+.-...++..|+..|. +.++.||..|+.+|.++...... ........ ++.-++.... ...++.+
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 1112468899999997 45999999999999998543322 11111111 1111111000 0001100
Q ss_pred ---hhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHhcCCCHH-HHHHHHHHHhh
Q 002304 295 ---CFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKF-----AGEALNLLVDMLNDDSVT-VRLQALETMHI 365 (939)
Q Consensus 295 ---~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~f-----A~~ALd~LvdmLnDe~~~-VRl~Aa~ALgk 365 (939)
+-.+...++++.|+..|.++++.||..|+.+|+.++..+++. ...+++.|+.++++.+.. ++..|+.+|..
T Consensus 266 ~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 345 (780)
T 2z6g_A 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 345 (780)
T ss_dssp TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 011234677778888888888888888888887777433332 134577777777776544 44456777777
Q ss_pred hhhcc---cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC--chhHHHHHHHHHHHhhcc-CccchHHHHHHHHH
Q 002304 366 MVTCE---HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTP--KLEFFRLFIDGLLENLKI-YPQDEADVFSVLFF 439 (939)
Q Consensus 366 I~~~~---~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~--~~~~l~~~l~~LL~~L~~-~peDr~~I~~aL~~ 439 (939)
++... ...+....++.|+.+|.+.++.+++.+..+|..+... .......++..|+..|+. .++.+..+.++|..
T Consensus 346 Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 346 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp HHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 76421 1112334678999999999999999998888775321 112234467777776654 34558889999999
Q ss_pred hhccc
Q 002304 440 IGRSH 444 (939)
Q Consensus 440 LG~~H 444 (939)
|...+
T Consensus 426 L~~~~ 430 (780)
T 2z6g_A 426 LTCNN 430 (780)
T ss_dssp HTSSC
T ss_pred HHhCC
Confidence 98754
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.24 E-value=1.4e-10 Score=137.27 Aligned_cols=312 Identities=12% Similarity=0.077 Sum_probs=185.7
Q ss_pred hhHHHHHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHH
Q 002304 114 TVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCR 193 (939)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~ 193 (939)
+--.|++...++......- .-++..+.+-++|++|.||..|+.+|+.+..+. +.+.+.+.
T Consensus 91 Krl~YL~l~~~~~~~~e~~--------------~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e------~~~~l~~~ 150 (621)
T 2vgl_A 91 KQIGYLFISVLVNSNSELI--------------RLINNAIKNDLASRNPTFMGLALHCIANVGSRE------MAEAFAGE 150 (621)
T ss_dssp HHHHHHHHHHSCCCCHHHH--------------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH------HHHHHTTH
T ss_pred HHHHHHHHHHHccCCcHHH--------------HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH------HHHHHHHH
Confidence 3446777777765432111 012335566788999999999999999997653 44567788
Q ss_pred HHHhh--CCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHH
Q 002304 194 AVELL--RDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLL 271 (939)
Q Consensus 194 l~~lL--~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~Ll 271 (939)
+.++| .|.++.||..|+-++..+-..... .++. ++.++.|..+|+|.++.|+.+|..+|.++....++...
T Consensus 151 v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~------~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 223 (621)
T 2vgl_A 151 IPKILVAGDTMDSVKQSAALCLLRLYRTSPD------LVPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK 223 (621)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG------GCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhChh------hcCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence 99999 999999999999999988763211 1111 25778999999999999999999999999553333211
Q ss_pred HHhhHHHhhhhhhh--------------------------hhccccch-h--h-hhhhhhcchHHHhhccCC--------
Q 002304 272 QTLSKKVLGATKEK--------------------------KFHSLGAA-E--C-FEISASAAAGTFVHGFED-------- 313 (939)
Q Consensus 272 qtL~kklm~~lk~k--------------------------r~~~~l~~-d--~-~~l~~s~a~gaLI~~LeD-------- 313 (939)
+.+ +++.+.+++. +....+.. + + ...+ -.....++..+.|
T Consensus 224 ~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l-~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 224 TSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL-TECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp THH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHH-HHHHHHHHHHHHSCCSCSSHH
T ss_pred HHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHH-HHHHHHHHHhhccCccccccc
Confidence 111 1111111100 00000000 0 0 0000 0011122222111
Q ss_pred -C--cHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc-ccchhhHHHHHHHhcC-C
Q 002304 314 -E--FYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH-LNLEDKHMHMFLGTLV-D 388 (939)
Q Consensus 314 -E--~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~-i~l~E~aL~~LL~~L~-D 388 (939)
. ...|-.+|+.++..+.. .+++...++..|..++.+.+..+|..|+.+|.++..... ...-.+..+.++..|+ |
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d 380 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTE 380 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccC
Confidence 1 23677777777777653 556666777777777777777777777777777764321 1122346667777777 7
Q ss_pred CCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccc-hHHHHHHHHHhhcccccchHHHHHHHhh
Q 002304 389 NSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD-EADVFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 389 ~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peD-r~~I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
++..||..+-++|-.+.. ..-++.++..|+.-+..-..+ +..+.++++.++.++|.-..-.++-|++
T Consensus 381 ~d~~Ir~~aL~lL~~l~~--~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ 448 (621)
T 2vgl_A 381 RDVSVRQRAVDLLYAMCD--RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILN 448 (621)
T ss_dssp CCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHcC--hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 777777777777666543 233555677776666553322 5556666666665554444444444443
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.24 E-value=1.3e-10 Score=141.21 Aligned_cols=237 Identities=13% Similarity=0.102 Sum_probs=179.2
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
..++.|..++.+++|.||..|+.+|+.+......-..-+..+..+.++.+|++.++.+|..|+.+|+.+.....+...-.
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 46788999999999999999999999997543211112234578999999999999999999999998764211100000
Q ss_pred cccccchhHHHHHHHhhcC-CCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHH
Q 002304 228 NRIDCSDVVFIQLCSMIRD-MRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGT 306 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D-~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ga 306 (939)
...+.+++.+|+.+|.. .+...+..|+++|+.+...+++.-.. ++..++++.
T Consensus 575 --~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~-------------------------Ii~aG~l~~ 627 (810)
T 3now_A 575 --GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQR-------------------------IIKEQGVSK 627 (810)
T ss_dssp --THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH-------------------------HHHTTHHHH
T ss_pred --chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHH-------------------------HHHcCCHHH
Confidence 00123578999999974 46677789999999997765443211 135678999
Q ss_pred HhhccCCCcHHHHHHHHHHHHhccccchh---hH--HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhc--c--cccch-h
Q 002304 307 FVHGFEDEFYEVRKSACSSLGSLVILSEK---FA--GEALNLLVDMLNDDSVTVRLQALETMHIMVTC--E--HLNLE-D 376 (939)
Q Consensus 307 LI~~LeDE~~eVR~aAaeALGkL~~~s~~---fA--~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~--~--~i~l~-E 376 (939)
|+..|.++...||++|+++||++...... |. ..+++.|+.+++.++..||..|+.||+.|... . +..++ .
T Consensus 628 Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~ 707 (810)
T 3now_A 628 IEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIA 707 (810)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTST
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 99999999999999999999999863222 22 24789999999999999999999999999861 1 11233 5
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhH
Q 002304 377 KHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEF 411 (939)
Q Consensus 377 ~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~ 411 (939)
..++.|+.+|.+++.++|+.+..++..+.-.+.+.
T Consensus 708 g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~ 742 (810)
T 3now_A 708 SWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI 742 (810)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 68899999999999999999999998875544443
No 54
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.22 E-value=2.3e-10 Score=139.05 Aligned_cols=271 Identities=11% Similarity=0.014 Sum_probs=196.4
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
.+..++.+..++.++++.+++.|+++++.+..... ....+.+...+.+..+++.+++.+|..|+-+|..++.... .
T Consensus 288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~-~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~--~- 363 (810)
T 3now_A 288 REGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGG--Q- 363 (810)
T ss_dssp TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHH-HHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTT--T-
T ss_pred ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcH-HHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccc--c-
Confidence 44667888999999999999999999999876532 1112333334899999999999999999999999874210 0
Q ss_pred ccccccc-----chhHHHHHHHhhcCC--CHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhh
Q 002304 226 EKNRIDC-----SDVVFIQLCSMIRDM--RMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEI 298 (939)
Q Consensus 226 ~~~~i~l-----vddaf~aLc~aL~D~--s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l 298 (939)
+...+. +...+..++.+|.++ +..||..|+++|+.+...+.... + + .
T Consensus 364 -d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~-~-----l-------------------v 417 (810)
T 3now_A 364 -DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE-K-----L-------------------I 417 (810)
T ss_dssp -TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH-H-----H-------------------H
T ss_pred -CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH-H-----H-------------------H
Confidence 111111 134566788888888 89999999999999964332210 0 0 0
Q ss_pred hhhcchHHHhhccCCCcHHHHHHHHHHHHhccccch------------------------------------h-hHHHHH
Q 002304 299 SASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE------------------------------------K-FAGEAL 341 (939)
Q Consensus 299 ~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~------------------------------------~-fA~~AL 341 (939)
.+.++++.|+..|..++..|...|+.+|+.+...++ . +...++
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 156889999999999999999999999999986431 1 113479
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhhhcc---cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccC--Cchh-----H
Q 002304 342 NLLVDMLNDDSVTVRLQALETMHIMVTCE---HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKT--PKLE-----F 411 (939)
Q Consensus 342 d~LvdmLnDe~~~VRl~Aa~ALgkI~~~~---~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l--~~~~-----~ 411 (939)
+.|+.++..+++.||.+|+.+|++|+... ..-++.-+++.|+.+|.+.++.+|+.|+.+|+.+.. +... .
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 99999999999999999999999998421 112344679999999999999999999999987532 1111 1
Q ss_pred HHHHHHHHHHhhccCccc--hHHHHHHHHHhhccccc
Q 002304 412 FRLFIDGLLENLKIYPQD--EADVFSVLFFIGRSHGN 446 (939)
Q Consensus 412 l~~~l~~LL~~L~~~peD--r~~I~~aL~~LG~~H~~ 446 (939)
...++..|+..|...... +..+.+||..|....++
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence 123678888877643222 34678888888765433
No 55
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.18 E-value=2.1e-10 Score=124.41 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=144.5
Q ss_pred CChhhHHHHHHhhhcCCCH------------HHHHHHHHHHHhhhhcccccchh-hhhhHHHHHHH-hhCCCCchHHHHH
Q 002304 144 VRPHLLFTVCLGLTKDPYP------------YVREAALNGLVCLLKHVVFEDVD-LIQGCCCRAVE-LLRDHEDCVRCAA 209 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp------------~VRraAl~AL~~L~~~~~~~~~~-l~~~i~~~l~~-lL~Ddd~~VR~aA 209 (939)
..+.+.++.....+.||+| .-|..|+..|..+.+... .... ...+.++.++. +|+++++.||..|
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHH
Confidence 4566778888888888754 467788888888876321 1111 12345788999 9999999999999
Q ss_pred HHHHHHhcchhhhhcccccccccc-hhHHHHHHHhhc-CCCHHHHHHHHHHHhccc-CCcHHHHHHHhhHHHhhhhhhhh
Q 002304 210 VRVVSEWGKMLIACIDEKNRIDCS-DVVFIQLCSMIR-DMRMEVRVEAFNALGKVG-MISEIVLLQTLSKKVLGATKEKK 286 (939)
Q Consensus 210 V~aLg~lg~~~~~~~~~~~~i~lv-ddaf~aLc~aL~-D~s~~VR~~AA~ALG~i~-~vs~~~LlqtL~kklm~~lk~kr 286 (939)
+.+||.+...-. ..+...+ ..++..|..+|+ |++..||..|+++|+.+. +-++ ....
T Consensus 103 a~~Lg~ia~~n~-----~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~-~~~~-------------- 162 (296)
T 1xqr_A 103 AQLIGTCSQNVA-----AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA-GLLQ-------------- 162 (296)
T ss_dssp HHHHHHHHTTCH-----HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH-HHHH--------------
T ss_pred HHHHHHHHhCCH-----HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH-HHHH--------------
Confidence 999998864210 0011111 358889999998 679999999999999983 3221 1100
Q ss_pred hccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHhcCCCHHHHHHHHH
Q 002304 287 FHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFA-----GEALNLLVDMLNDDSVTVRLQALE 361 (939)
Q Consensus 287 ~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ 361 (939)
+.+.++++.|++.|.+.+..||+.|+.+|+.+...+++.. ..+++.|+++|++++..||..|+.
T Consensus 163 -----------~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~ 231 (296)
T 1xqr_A 163 -----------FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLG 231 (296)
T ss_dssp -----------HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHH
T ss_pred -----------HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHH
Confidence 1245678999999999999999999999999876555432 457899999999999999999999
Q ss_pred HHhhhhh
Q 002304 362 TMHIMVT 368 (939)
Q Consensus 362 ALgkI~~ 368 (939)
+|+.|..
T Consensus 232 aL~~l~~ 238 (296)
T 1xqr_A 232 ALCSLVT 238 (296)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999985
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.17 E-value=2.7e-10 Score=117.52 Aligned_cols=181 Identities=14% Similarity=0.095 Sum_probs=138.2
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhc-CCCHHHHHHHHHHHhcccCCcHHHH
Q 002304 192 CRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIR-DMRMEVRVEAFNALGKVGMISEIVL 270 (939)
Q Consensus 192 ~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~-D~s~~VR~~AA~ALG~i~~vs~~~L 270 (939)
+.+.+.++|.+..+|.+|+..|+.+........ . .-..+.+..|...+. |.+..||..|+.+||.+..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~----~-~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~------ 86 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE----N-GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK------ 86 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC----C-CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH------
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCC----C-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH------
Confidence 346777999999999999999998754210000 1 113577889999995 9999999999999999852
Q ss_pred HHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcC
Q 002304 271 LQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND 350 (939)
Q Consensus 271 lqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnD 350 (939)
.+.+ .|.......+++++..|.|....||.+|+.+|..+....+ ....++.|...++|
T Consensus 87 --~l~~------------------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~ 144 (242)
T 2qk2_A 87 --GLAK------------------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSN 144 (242)
T ss_dssp --HHGG------------------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC
T ss_pred --HHhh------------------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC
Confidence 0100 0111124467899999999999999999999988875322 25688999999999
Q ss_pred CCHHHHHHHHHHHhhhh-hcccc----cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 351 DSVTVRLQALETMHIMV-TCEHL----NLEDKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 351 e~~~VRl~Aa~ALgkI~-~~~~i----~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
.++.||..++..|+.+. ..+.- ..-...++.+...|+|.+++||.++..+++.+.
T Consensus 145 ~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 145 KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 99999999999999964 22111 112478899999999999999999999998854
No 57
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.10 E-value=1.3e-09 Score=120.85 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHHHHhhhhcccccchhh--hhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccc-hhH
Q 002304 160 PYPYVREAALNGLVCLLKHVVFEDVDL--IQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCS-DVV 236 (939)
Q Consensus 160 ~Dp~VRraAl~AL~~L~~~~~~~~~~l--~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lv-dda 236 (939)
.++.+|+.|+.+|..+..........+ ..++.+.++++|+.+++.||..|+.+|+.++..- +...+...+ ..+
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~----~~~~k~~i~~~G~ 171 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA----DVNSKKTLREVGS 171 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC----CHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccC----CHHHHHHHHHCCC
Confidence 357899999999999964321011122 2456899999999999999999999999886410 000011111 357
Q ss_pred HHHHHHh-hcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhh-hhcchHHHhhccCCC
Q 002304 237 FIQLCSM-IRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEIS-ASAAAGTFVHGFEDE 314 (939)
Q Consensus 237 f~aLc~a-L~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~-~s~a~gaLI~~LeDE 314 (939)
+..|+++ ++..+..++..|+.+|+.+.....+.-. .+. ..+++++|+..|.+.
T Consensus 172 Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~-------------------------~i~~~~Gai~~Lv~lL~~~ 226 (354)
T 3nmw_A 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKA-------------------------DICAVDGALAFLVGTLTYR 226 (354)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH-------------------------HHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH-------------------------HHHHhcCcHHHHHHHhccC
Confidence 8899997 5778999999999999998653322100 011 467899999999865
Q ss_pred cH----HHHHHHHHHHHhccc---cchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc----cccchhhH
Q 002304 315 FY----EVRKSACSSLGSLVI---LSEKFA-----GEALNLLVDMLNDDSVTVRLQALETMHIMVTCE----HLNLEDKH 378 (939)
Q Consensus 315 ~~----eVR~aAaeALGkL~~---~s~~fA-----~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~----~i~l~E~a 378 (939)
.. +|+..|+.+|..++. .+++.. ..+++.|+.++.+.+..|+..|+.+|++++... ..-.+.-.
T Consensus 227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 43 699999999998874 333322 247899999999999999999999999998311 11133457
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 379 MHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 379 L~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
++.|..+|.+.++.+|+.+..+|..+-
T Consensus 307 i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 307 VSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999988777654
No 58
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.06 E-value=2.3e-09 Score=123.01 Aligned_cols=304 Identities=13% Similarity=0.005 Sum_probs=196.3
Q ss_pred hhHHHHhhhccCCchhHHHHHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcC----CCHHHHH-------HH
Q 002304 100 RLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKD----PYPYVRE-------AA 168 (939)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D----~Dp~VRr-------aA 168 (939)
...+|..|+..++...+.+....++-= +-..+... ..++..+..-+.+ ..| ||. .|
T Consensus 102 a~~al~ni~~~~~~~~~~~~~~~~~~~------l~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~qA 168 (458)
T 3nmz_A 102 ASAALHNIIHSQPDDKRGRREIRVLHL------LEQIRAYC------ETCWEWQEAHEPGMDQDKNP-MPAPVEHQICPA 168 (458)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHH------HHHHHHHH------HHHHHHHTTTSSSSCCCSCC---CCCTTTTHHH
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHH------HHHhhhhh------HHHHHHHHhhccccccccCC-ccchhhHHHHHH
Confidence 778888899888886666555444300 00111111 0112222222111 112 666 88
Q ss_pred HHHHHhhhhcccccchhhhhhHHHHHHHhhC-----------CCCchHHHHHHHHHHHhcchhhhhccccccccc--chh
Q 002304 169 LNGLVCLLKHVVFEDVDLIQGCCCRAVELLR-----------DHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDC--SDV 235 (939)
Q Consensus 169 l~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~-----------Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~l--vdd 235 (939)
+.+|+++......-+.-+..+..+.++.+|. ++++.++..|+.+|..+...- ...+... ...
T Consensus 169 v~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~-----~~~k~~i~~~~G 243 (458)
T 3nmz_A 169 VCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD-----VANKATLCSMKG 243 (458)
T ss_dssp HHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHCHH
T ss_pred HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC-----cccHHHHHHcCC
Confidence 8888887644211011112345677888883 135779999999999876421 1111111 245
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhcccCC-cHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhc-cCC
Q 002304 236 VFIQLCSMIRDMRMEVRVEAFNALGKVGMI-SEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHG-FED 313 (939)
Q Consensus 236 af~aLc~aL~D~s~~VR~~AA~ALG~i~~v-s~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~-LeD 313 (939)
++..|+.+|...+..|+..|+++|+.+... ..+. |. .+...+++++|+.. ++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~------k~-------------------~I~~~GaI~~LV~lLl~s 298 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS------KK-------------------TLREVGSVKALMECALEV 298 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHH------HH-------------------HHHHTTHHHHHHHHHTTC
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHH------HH-------------------HHHHcCCHHHHHHHHhcC
Confidence 689999999999999999999999999542 2221 00 12357889999997 566
Q ss_pred CcHHHHHHHHHHHHhccccc----hhhH--HHHHHHHHHHhcCCCH----HHHHHHHHHHhhhhhc---c----cccchh
Q 002304 314 EFYEVRKSACSSLGSLVILS----EKFA--GEALNLLVDMLNDDSV----TVRLQALETMHIMVTC---E----HLNLED 376 (939)
Q Consensus 314 E~~eVR~aAaeALGkL~~~s----~~fA--~~ALd~LvdmLnDe~~----~VRl~Aa~ALgkI~~~---~----~i~l~E 376 (939)
.+..|+..|+.+|+.|...+ ..+. ..+++.|+.++.+... .|+..|+.+|..|+.. . ..-...
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 78899999999999988622 2333 3589999999997765 5999999999998731 1 111224
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHH-----HHHHHHhhcc-CccchHHHHHHHHHhhccccc
Q 002304 377 KHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLF-----IDGLLENLKI-YPQDEADVFSVLFFIGRSHGN 446 (939)
Q Consensus 377 ~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~-----l~~LL~~L~~-~peDr~~I~~aL~~LG~~H~~ 446 (939)
..++.|+.+|.+.+.++++.|..+|+.+...+.+..+.+ +..|...|.. .+..++.+.++|.+|-.++|.
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 578999999999999999999999998765444443333 4445555533 333478899999999877653
No 59
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.99 E-value=5.9e-09 Score=115.72 Aligned_cols=255 Identities=14% Similarity=-0.003 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCC-----------CCchHHHHHHHHHHHhcchhhhhcccccccc
Q 002304 163 YVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRD-----------HEDCVRCAAVRVVSEWGKMLIACIDEKNRID 231 (939)
Q Consensus 163 ~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~D-----------dd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~ 231 (939)
...-.|+.+|+++......-+.-+..+..+.++++|.. +++.+|..|+.+|..+...- ...+..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~-----~~~k~~ 121 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD-----VANKAT 121 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC-----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC-----HHHHHH
Confidence 33445566666665332100111122345777777731 24789999999999886421 111111
Q ss_pred c--chhHHHHHHHhhcCCCHHHHHHHHHHHhcccCC-cHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHh
Q 002304 232 C--SDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMI-SEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFV 308 (939)
Q Consensus 232 l--vddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~v-s~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI 308 (939)
. ...++..|+.+|+.++..||..|+.+|+.+... .++. |. .+...+++++|+
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~------k~-------------------~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS------KK-------------------TLREVGSVKALM 176 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHH------HH-------------------HHHHTTHHHHHH
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHH------HH-------------------HHHHCCCHHHHH
Confidence 1 234689999999999999999999999999542 2221 00 123578899999
Q ss_pred hc-cCCCcHHHHHHHHHHHHhccccch----hhH--HHHHHHHHHHhcCCCH----HHHHHHHHHHhhhhh----cc--c
Q 002304 309 HG-FEDEFYEVRKSACSSLGSLVILSE----KFA--GEALNLLVDMLNDDSV----TVRLQALETMHIMVT----CE--H 371 (939)
Q Consensus 309 ~~-LeDE~~eVR~aAaeALGkL~~~s~----~fA--~~ALd~LvdmLnDe~~----~VRl~Aa~ALgkI~~----~~--~ 371 (939)
+. ++..+.++++.|+.+|+.++..++ .+. ..+++.|+.++.+..+ .|+..|+.+|..++. .. +
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 97 466788999999999999886332 233 4689999999998765 599999999999883 11 1
Q ss_pred -ccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHH-----HHHHHHhhcc-CccchHHHHHHHHHhhccc
Q 002304 372 -LNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLF-----IDGLLENLKI-YPQDEADVFSVLFFIGRSH 444 (939)
Q Consensus 372 -i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~-----l~~LL~~L~~-~peDr~~I~~aL~~LG~~H 444 (939)
.......++.|+.+|.+.+..+++.|..+|..+...+.+..+.+ +..|...|.. .+..++.+.++|..|-..+
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 11223578999999999999999999999999875544444333 4445555543 2333788889999998776
Q ss_pred ccc
Q 002304 445 GNF 447 (939)
Q Consensus 445 ~~l 447 (939)
|..
T Consensus 337 ~~~ 339 (354)
T 3nmw_A 337 PAK 339 (354)
T ss_dssp CGG
T ss_pred HHH
Confidence 554
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.99 E-value=7.3e-09 Score=117.54 Aligned_cols=268 Identities=11% Similarity=0.021 Sum_probs=161.7
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhh-hhhHHHHHHHhhC-CCCchHHHHHHHHHHHhcchhhhhc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDL-IQGCCCRAVELLR-DHEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l-~~~i~~~l~~lL~-Ddd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
...++.+..+++++++.++..|+.+|..+..........+ ..+..+.++++|+ ++++.||..|+.+|+.++..
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~----- 117 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST----- 117 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-----
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-----
Confidence 3457888999999999999999999999975311011111 2345789999998 88999999999999988752
Q ss_pred ccccccccchhHHHHHHHhh--------cCC--------CHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhc
Q 002304 225 DEKNRIDCSDVVFIQLCSMI--------RDM--------RMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFH 288 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL--------~D~--------s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~ 288 (939)
+..+...+..++..|+.++ .++ +..|.+.|+++|+.+... ++.-....
T Consensus 118 -~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~-------------- 181 (457)
T 1xm9_A 118 -DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMR-------------- 181 (457)
T ss_dssp -SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHT--------------
T ss_pred -HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHH--------------
Confidence 1112223347888999999 333 566777999999999654 22211111
Q ss_pred cccchhhhhhhhh-cchHHHhhccCC------CcHHHHHHHHHHHHhccc------------------------------
Q 002304 289 SLGAAECFEISAS-AAAGTFVHGFED------EFYEVRKSACSSLGSLVI------------------------------ 331 (939)
Q Consensus 289 ~~l~~d~~~l~~s-~a~gaLI~~LeD------E~~eVR~aAaeALGkL~~------------------------------ 331 (939)
+. +++++|++.|.+ .+..++..|+..|..+..
T Consensus 182 -----------~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (457)
T 1xm9_A 182 -----------NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCF 250 (457)
T ss_dssp -----------TSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------------
T ss_pred -----------HcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchh
Confidence 22 444444444432 122333333333333210
Q ss_pred ------------------------cchh-hHHHHHHHHHHHhcCC-CHHHHHHHHHHHhhhhhcc-c----c---cc-hh
Q 002304 332 ------------------------LSEK-FAGEALNLLVDMLNDD-SVTVRLQALETMHIMVTCE-H----L---NL-ED 376 (939)
Q Consensus 332 ------------------------~s~~-fA~~ALd~LvdmLnDe-~~~VRl~Aa~ALgkI~~~~-~----i---~l-~E 376 (939)
.... +...+++.|+.++.+. ++.++..|+.||++|.... . + .+ .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~ 330 (457)
T 1xm9_A 251 SNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKE 330 (457)
T ss_dssp ---------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTS
T ss_pred hccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHc
Confidence 0000 1134677777777654 5788888888888886411 1 1 12 24
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhH---HHHHHHHHHHhhccCcc-------chHHHHHHHHHhhccccc
Q 002304 377 KHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEF---FRLFIDGLLENLKIYPQ-------DEADVFSVLFFIGRSHGN 446 (939)
Q Consensus 377 ~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~---l~~~l~~LL~~L~~~pe-------Dr~~I~~aL~~LG~~H~~ 446 (939)
..+|.|+.+|.+++.+||++|..+|+.+....... -..++..|+..|..-.. .-..++++|.+|....++
T Consensus 331 ~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~ 410 (457)
T 1xm9_A 331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410 (457)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH
T ss_pred CCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 67788888888888888888888888764332111 12345556665554211 122556666666544433
No 61
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.99 E-value=1.3e-08 Score=116.87 Aligned_cols=294 Identities=14% Similarity=0.103 Sum_probs=187.2
Q ss_pred HHHHHhhcCCchHHHHHHhhhccccCCChhhHHHHHHhhhcCCC------------HHHHHHHHHHHHhhhhccccc-ch
Q 002304 118 RFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPY------------PYVREAALNGLVCLLKHVVFE-DV 184 (939)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~D------------p~VRraAl~AL~~L~~~~~~~-~~ 184 (939)
|.+-++...+++ |.-+- ....++.|.+++++.+ +.+|..|+.||..|....-.. ..
T Consensus 51 ~~ll~~~~~~~~--~~~~~---------~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~ 119 (458)
T 3nmz_A 51 RTLLAMSSSQDS--CISMR---------QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRG 119 (458)
T ss_dssp HHHHHHHSSTTH--HHHHH---------HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHHHHcCCcH--HHHHH---------HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHH
Confidence 455566666663 33222 3344677777777643 799999999999997632100 00
Q ss_pred hhhhhHH----------HHHHHhhCCC--Cch-----HHH-------HHHHHHHHhcchhhhhcccccccccchhHHHHH
Q 002304 185 DLIQGCC----------CRAVELLRDH--EDC-----VRC-------AAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQL 240 (939)
Q Consensus 185 ~l~~~i~----------~~l~~lL~Dd--d~~-----VR~-------aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aL 240 (939)
.....++ +.++++++-. +++ ||. .|+.+|+.++..- +..+.-.-..++.+|
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-----e~R~~i~~~G~l~~L 194 (458)
T 3nmz_A 120 RREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-----EHRHAMNELGGLQAI 194 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH-----HHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCH-----HHHHHHHHCCCHHHH
Confidence 0001112 3344445322 122 777 9999999887521 010001113477788
Q ss_pred HHhhc-----------CCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhh
Q 002304 241 CSMIR-----------DMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVH 309 (939)
Q Consensus 241 c~aL~-----------D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~ 309 (939)
...|. +.+..++..|+++|..+..-.++. |..+. -..+++++|+.
T Consensus 195 v~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~------k~~i~------------------~~~GaIp~LV~ 250 (458)
T 3nmz_A 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN------KATLC------------------SMKGCMRALVA 250 (458)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH------HHHHH------------------HCHHHHHHHHH
T ss_pred HHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc------HHHHH------------------HcCCcHHHHHH
Confidence 88883 245789999999999995322211 00000 03567999999
Q ss_pred ccCCCcHHHHHHHHHHHHhcccc-chh----hH-HHHHHHHHHH-hcCCCHHHHHHHHHHHhhhhh-cc--cccc--hhh
Q 002304 310 GFEDEFYEVRKSACSSLGSLVIL-SEK----FA-GEALNLLVDM-LNDDSVTVRLQALETMHIMVT-CE--HLNL--EDK 377 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~-s~~----fA-~~ALd~Lvdm-LnDe~~~VRl~Aa~ALgkI~~-~~--~i~l--~E~ 377 (939)
.|..++.+||..|+.+|+.++.. +++ +. ..+++.|+++ +...++.|+..|+.+|+.|+. .. +..+ ...
T Consensus 251 LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G 330 (458)
T 3nmz_A 251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 330 (458)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence 99999999999999999999863 222 12 3579999997 566789999999999999986 21 1222 456
Q ss_pred HHHHHHHhcCCCCH----HHHHHHHHHHhhccC---CchhHHHH-----HHHHHHHhhccCc-cchHHHHHHHHHhhccc
Q 002304 378 HMHMFLGTLVDNSE----LVRCAARKILKLVKT---PKLEFFRL-----FIDGLLENLKIYP-QDEADVFSVLFFIGRSH 444 (939)
Q Consensus 378 aL~~LL~~L~D~~~----dVR~aA~~aLg~i~l---~~~~~l~~-----~l~~LL~~L~~~p-eDr~~I~~aL~~LG~~H 444 (939)
.++.|..+|.+.+. +|++.+..+|..+.. .+.+..+. ++..|+..|..-. +.++.+.++|..|...+
T Consensus 331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 89999999997765 489888888877652 22222222 3566777776543 33888999999997555
Q ss_pred ccchHHH
Q 002304 445 GNFAACI 451 (939)
Q Consensus 445 ~~lv~~l 451 (939)
++....+
T Consensus 411 ~~~~~~i 417 (458)
T 3nmz_A 411 PKDQEAL 417 (458)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 62
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.95 E-value=5.3e-08 Score=114.84 Aligned_cols=296 Identities=13% Similarity=0.044 Sum_probs=196.6
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc--ccccchhhhhhHHHHHHHhhCC-CCchHHHHHHHHHHHhcchhhh
Q 002304 146 PHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH--VVFEDVDLIQGCCCRAVELLRD-HEDCVRCAAVRVVSEWGKMLIA 222 (939)
Q Consensus 146 ~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~--~~~~~~~l~~~i~~~l~~lL~D-dd~~VR~aAV~aLg~lg~~~~~ 222 (939)
....++.|..+++++++.|+..|+.+|..+... ...-..-...+..+.++++|+. .+..++..|+.+|+.++..
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~--- 164 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--- 164 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS---
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---
Confidence 334578899999999999999999999999742 1100111123457889999986 6889999999999998862
Q ss_pred hcccccccccchhHHHHHHHhhc------------------CCCHHHHHHHHHHHhcccCCcHH-------------HHH
Q 002304 223 CIDEKNRIDCSDVVFIQLCSMIR------------------DMRMEVRVEAFNALGKVGMISEI-------------VLL 271 (939)
Q Consensus 223 ~~~~~~~i~lvddaf~aLc~aL~------------------D~s~~VR~~AA~ALG~i~~vs~~-------------~Ll 271 (939)
+..+..++..++..|++++. -.+..|+..|+.+|..+...+++ .|.
T Consensus 165 ---~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV 241 (584)
T 3l6x_A 165 ---DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241 (584)
T ss_dssp ---GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHH
T ss_pred ---chhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHH
Confidence 12233344567778888661 23679999999999999655432 222
Q ss_pred HHhhHHH---------h----hhhhh-----hhhcccc-----------------chhhhh-hhhhcchHHHhhccC-CC
Q 002304 272 QTLSKKV---------L----GATKE-----KKFHSLG-----------------AAECFE-ISASAAAGTFVHGFE-DE 314 (939)
Q Consensus 272 qtL~kkl---------m----~~lk~-----kr~~~~l-----------------~~d~~~-l~~s~a~gaLI~~Le-DE 314 (939)
..|...+ . ..++. ....+.. ..+.++ ++.+++++.|++.|. ..
T Consensus 242 ~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~ 321 (584)
T 3l6x_A 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK 321 (584)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC
T ss_pred HHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC
Confidence 2222110 0 00100 0000000 001122 345567788899995 35
Q ss_pred cHHHHHHHHHHHHhccccc---h-h---hH--HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcc--cccchhhHHHHHH
Q 002304 315 FYEVRKSACSSLGSLVILS---E-K---FA--GEALNLLVDMLNDDSVTVRLQALETMHIMVTCE--HLNLEDKHMHMFL 383 (939)
Q Consensus 315 ~~eVR~aAaeALGkL~~~s---~-~---fA--~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~--~i~l~E~aL~~LL 383 (939)
..+|+.+|+.+|..|.... + . .. ..+++.|+++|..+++.|+..|+.+|+.|+... +..+....++.|+
T Consensus 322 ~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV 401 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLV 401 (584)
T ss_dssp CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHH
Confidence 7899999999999996432 1 1 11 467999999999999999999999999998622 2234567899999
Q ss_pred HhcCCC--------CHHHHHHHHHHHhhccCCchhHHHH-----HHHHHHHhhcc---CccchHHHHHHHHHhhcccccc
Q 002304 384 GTLVDN--------SELVRCAARKILKLVKTPKLEFFRL-----FIDGLLENLKI---YPQDEADVFSVLFFIGRSHGNF 447 (939)
Q Consensus 384 ~~L~D~--------~~dVR~aA~~aLg~i~l~~~~~l~~-----~l~~LL~~L~~---~peDr~~I~~aL~~LG~~H~~l 447 (939)
.+|.+. +.+++.++..+|+.+--.+.+..+. ++..|...+.. .+...+.+.++|..+-. |.++
T Consensus 402 ~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~-~~el 480 (584)
T 3l6x_A 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG-YKEL 480 (584)
T ss_dssp HTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT-SHHH
T ss_pred HHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc-CHHH
Confidence 999987 4789998988888764333333332 34556665554 23457888888888865 5444
Q ss_pred h
Q 002304 448 A 448 (939)
Q Consensus 448 v 448 (939)
.
T Consensus 481 r 481 (584)
T 3l6x_A 481 R 481 (584)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.94 E-value=2.5e-08 Score=118.08 Aligned_cols=268 Identities=12% Similarity=0.047 Sum_probs=183.0
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~ 226 (939)
+.+...+.+++.+++...|+.+.-++..+.+... .+..-....+.+-|+|+++.||-.|+++|+.++..
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~----e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~------- 141 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS----ELIRLINNAIKNDLASRNPTFMGLALHCIANVGSR------- 141 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH----HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-------
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc----HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCH-------
Confidence 3455666678999999999999999998876532 22222356677889999999999999999998752
Q ss_pred ccccccchhHHHHHHHhh--cCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 227 KNRIDCSDVVFIQLCSMI--RDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~aL--~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
.+..+....+.+.+ .|.++.||+.|+-++.++-...++.+. ..+..
T Consensus 142 ----e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~----------------------------~~~~~ 189 (621)
T 2vgl_A 142 ----EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP----------------------------MGDWT 189 (621)
T ss_dssp ----HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC----------------------------CCSCH
T ss_pred ----HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC----------------------------chhHH
Confidence 13355667888899 999999999999999998533222210 12466
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHhcCC-------------CHHHHHHHHHHHhhhh
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVILSEK----FAGEALNLLVDMLNDD-------------SVTVRLQALETMHIMV 367 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~----fA~~ALd~LvdmLnDe-------------~~~VRl~Aa~ALgkI~ 367 (939)
+.+...|.|.+..|+.+|+.+|+.+...+++ +...++..|-.++.+. ++..+...++.|+.++
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 7788899999999999999999998866554 2344444444444322 6889999999999988
Q ss_pred hcccccchhh---HHHHHHHhcCCC---------CH--HHHHHHHHHHhhccCCchhHHHHHHHHHHHhhc-cCccchHH
Q 002304 368 TCEHLNLEDK---HMHMFLGTLVDN---------SE--LVRCAARKILKLVKTPKLEFFRLFIDGLLENLK-IYPQDEAD 432 (939)
Q Consensus 368 ~~~~i~l~E~---aL~~LL~~L~D~---------~~--dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~-~~peDr~~ 432 (939)
..+.-...+. .++.++..+.|. +. -|--++..++-.+. ++...++.++..|..-|. ..+..|..
T Consensus 270 ~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~ 348 (621)
T 2vgl_A 270 PPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYL 348 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 5321122222 333444333221 22 44444444444443 445556677777777664 44555888
Q ss_pred HHHHHHHhhcccc--cchHHHHHHHhhh
Q 002304 433 VFSVLFFIGRSHG--NFAACIIKEVCQE 458 (939)
Q Consensus 433 I~~aL~~LG~~H~--~lv~~lv~~Ll~~ 458 (939)
+.++|..+...|| +++....+.++..
T Consensus 349 aL~~l~~l~~~~~~~~~~~~~~~~i~~~ 376 (621)
T 2vgl_A 349 ALESMCTLASSEFSHEAVKTHIETVINA 376 (621)
T ss_dssp HHHHHHHHTTCTTTHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 8889999988886 5666666666654
No 64
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.92 E-value=2.1e-08 Score=108.78 Aligned_cols=187 Identities=11% Similarity=0.094 Sum_probs=136.0
Q ss_pred HHHHHHhhCCCCc------------hHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHH-hhcCCCHHHHHHHHH
Q 002304 191 CCRAVELLRDHED------------CVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCS-MIRDMRMEVRVEAFN 257 (939)
Q Consensus 191 ~~~l~~lL~Ddd~------------~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~-aL~D~s~~VR~~AA~ 257 (939)
++.+++.|.|+.+ .-|..|+..|..+.......+ .+ ....++..|.. .|++++..||..|++
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~----~~-~~~G~l~~Lv~~lL~s~~~~vr~~Aa~ 104 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAA----DF-CQLSGMHLLVGRYLEAGAAGLRWRAAQ 104 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHH----HH-HHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHH----HH-HHcCCHHHHHHHHHcCCCHHHHHHHHH
Confidence 4555666666533 346667776666554211000 00 01246788999 999999999999999
Q ss_pred HHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC-CCcHHHHHHHHHHHHhccccchh-
Q 002304 258 ALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE-DEFYEVRKSACSSLGSLVILSEK- 335 (939)
Q Consensus 258 ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le-DE~~eVR~aAaeALGkL~~~s~~- 335 (939)
+||.+..-.+..= + .++..++++.|+..|. |....||..|+.+|+.+...++.
T Consensus 105 ~Lg~ia~~n~~~~-~------------------------~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 105 LIGTCSQNVAAIQ-E------------------------QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp HHHHHHTTCHHHH-H------------------------HHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhCCHHHH-H------------------------HHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 9999954333220 0 1235688999999998 55889999999999998754433
Q ss_pred ---hH-HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc----ccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCC
Q 002304 336 ---FA-GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH----LNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTP 407 (939)
Q Consensus 336 ---fA-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~----i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~ 407 (939)
|. ..+++.|+.++++.+..||..|+.+|+.+..... .-.....++.|+.+|.+++++||..+..+|+.+--.
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 32 3589999999999999999999999999975211 123456889999999999999999999999887543
No 65
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.6e-08 Score=106.64 Aligned_cols=198 Identities=12% Similarity=0.075 Sum_probs=141.9
Q ss_pred HHhhhcCCCHHHHHHHHHHHHh-hhhc--cccc-chhhhhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhh-hhccc
Q 002304 153 CLGLTKDPYPYVREAALNGLVC-LLKH--VVFE-DVDLIQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLI-ACIDE 226 (939)
Q Consensus 153 L~~ll~D~Dp~VRraAl~AL~~-L~~~--~~~~-~~~l~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~-~~~~~ 226 (939)
+.+.+++.+..-|++|+++|.. +... .... ... ..+++..+.+.+ +|.+..||..|+++||.++..+. +.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~-~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~--- 96 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQN-YSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG--- 96 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCccc-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc---
Confidence 5667899999999999999999 7532 2210 111 135677888889 89999999999999999886442 11
Q ss_pred cccc-ccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcch
Q 002304 227 KNRI-DCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAA 304 (939)
Q Consensus 227 ~~~i-~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ 304 (939)
-. +.....+..|...+.|....||.+|..+|-.+-. .++......| ....
T Consensus 97 --f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l--------------------------~~ll 148 (249)
T 2qk1_A 97 --FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN--------------------------EDML 148 (249)
T ss_dssp --SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT--------------------------HHHH
T ss_pred --ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH--------------------------HHHH
Confidence 11 2335678899999999999999999988877632 2110000000 1234
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccccch----hh---H-HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchh
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVILSE----KF---A-GEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLED 376 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~s~----~f---A-~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E 376 (939)
+.+..+|....|.||.+++..|+......+ .| . ...+|.|...++|++..||.+|+++|+.+.. .+.+
T Consensus 149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~----~vG~ 224 (249)
T 2qk1_A 149 KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK----IFGM 224 (249)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HHCS
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----HhCH
Confidence 567778999999999999999988875433 12 3 5678999999999999999999999999763 1234
Q ss_pred hHHHHHHHhc
Q 002304 377 KHMHMFLGTL 386 (939)
Q Consensus 377 ~aL~~LL~~L 386 (939)
+.+..++.-|
T Consensus 225 ~~~~p~l~~L 234 (249)
T 2qk1_A 225 NTFVKTLEHL 234 (249)
T ss_dssp GGGHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 4556666666
No 66
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.90 E-value=4.5e-08 Score=111.11 Aligned_cols=260 Identities=12% Similarity=0.028 Sum_probs=177.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccc-hhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304 150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFED-VDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN 228 (939)
Q Consensus 150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~-~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~ 228 (939)
++.+..+++++|+.++..|+.+|..+........ .-...+..+.++++|+++++.|+..|+.+|..+.... ++.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~----~~~- 78 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS----TTN- 78 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC----HHH-
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC----HHH-
Confidence 4667788889999999999999999864321111 1223456899999999999999999999999887520 100
Q ss_pred ccccc-hhHHHHHHHhhc-CCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHH
Q 002304 229 RIDCS-DVVFIQLCSMIR-DMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGT 306 (939)
Q Consensus 229 ~i~lv-ddaf~aLc~aL~-D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ga 306 (939)
+...+ ..++..|+++|. +.+..|+..|+++|+.+....+ . +..++. +++++
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~-~-------------------------~~~i~~-g~i~~ 131 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-L-------------------------KEELIA-DALPV 131 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-T-------------------------HHHHHH-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH-h-------------------------HHHHHh-ccHHH
Confidence 11111 346889999999 8899999999999999953211 1 011235 78889
Q ss_pred Hhhcc--------CC--------CcHHHHHHHHHHHHhccccchhhH------HHHHHHHHHHhcC------CCHHHHHH
Q 002304 307 FVHGF--------ED--------EFYEVRKSACSSLGSLVILSEKFA------GEALNLLVDMLND------DSVTVRLQ 358 (939)
Q Consensus 307 LI~~L--------eD--------E~~eVR~aAaeALGkL~~~s~~fA------~~ALd~LvdmLnD------e~~~VRl~ 358 (939)
|+..| .+ .+.+|++.|+.+|+.+... ++.. ..+++.|+.++++ .+..+..+
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~ 210 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVEN 210 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHH
Confidence 99998 33 2456777999999999864 4422 1578999998874 34456667
Q ss_pred HHHHHhhhhhc-----------------------------------------------------c-cccchhhHHHHHHH
Q 002304 359 ALETMHIMVTC-----------------------------------------------------E-HLNLEDKHMHMFLG 384 (939)
Q Consensus 359 Aa~ALgkI~~~-----------------------------------------------------~-~i~l~E~aL~~LL~ 384 (939)
|+.+|..+... + ..-+....++.++.
T Consensus 211 a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 290 (457)
T 1xm9_A 211 CMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290 (457)
T ss_dssp HHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHH
T ss_pred HHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHH
Confidence 77666665310 0 11234567888888
Q ss_pred hcCCC-CHHHHHHHHHHHhhccCCchh---HH-H------HHHHHHHHhhccCc-cchHHHHHHHHHhhc
Q 002304 385 TLVDN-SELVRCAARKILKLVKTPKLE---FF-R------LFIDGLLENLKIYP-QDEADVFSVLFFIGR 442 (939)
Q Consensus 385 ~L~D~-~~dVR~aA~~aLg~i~l~~~~---~l-~------~~l~~LL~~L~~~p-eDr~~I~~aL~~LG~ 442 (939)
+|.+. ++++++++..+|+.+.-.+.. .. + .++..|+..|..-. +.++.+.++|..+..
T Consensus 291 lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 291 LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 88754 699999999999887432211 11 2 23445666555432 348889999999964
No 67
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.86 E-value=2.7e-08 Score=104.85 Aligned_cols=165 Identities=15% Similarity=0.044 Sum_probs=126.1
Q ss_pred hhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHH-hhcCCCHHHHHHHHHHHhcccC-C
Q 002304 188 QGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCS-MIRDMRMEVRVEAFNALGKVGM-I 265 (939)
Q Consensus 188 ~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~-aL~D~s~~VR~~AA~ALG~i~~-v 265 (939)
+++.+.+..+.+|+.++||+.|+.+||.. .. ..+++..|.. ...|++|+||..+|++++++.. .
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~-------------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~ 135 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK-------------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI 135 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT-------------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cC-------------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc
Confidence 34678889999999999999999999986 21 1456777777 7789999999999999998742 1
Q ss_pred cHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHH---HhccccchhhHHHHHH
Q 002304 266 SEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSL---GSLVILSEKFAGEALN 342 (939)
Q Consensus 266 s~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeAL---GkL~~~s~~fA~~ALd 342 (939)
.+ ..+.+.+..-+.|++.+||+.|++.+ |++- ....-...+++
T Consensus 136 ~p---------------------------------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~-~~k~dp~~ll~ 181 (240)
T 3l9t_A 136 EY---------------------------------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRP-YFKENPNEAIR 181 (240)
T ss_dssp CT---------------------------------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST-TTTTCHHHHHH
T ss_pred CH---------------------------------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc-hhhcCHHHHHH
Confidence 11 12345677788999999999999997 3321 11112356889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 343 LLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 343 ~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
.|..+.+|++..||...+.+|..++-. ..+.|..++..=.-++++++.....+++.++
T Consensus 182 iL~~L~~D~s~yVrKSVan~LrD~SK~-----~Pd~V~~~~~~w~~~~~~~~~i~k~A~k~l~ 239 (240)
T 3l9t_A 182 RIADLKEDVSEYVRKSVGNALRDISKK-----FPDLVKIELKNWKLESKEINQVYKLASKFID 239 (240)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTCCCCSHHHHHHHHHHTTTCC
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhh-----CHHHHHHHHHHhhccCHhHHHHHHHHHhhcc
Confidence 999999999999999999999999842 3456777777665668888888877776653
No 68
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.84 E-value=4e-08 Score=118.55 Aligned_cols=234 Identities=14% Similarity=0.084 Sum_probs=166.3
Q ss_pred ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCch---HHHHHHHHHHHhcchhh
Q 002304 145 RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDC---VRCAAVRVVSEWGKMLI 221 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~---VR~aAV~aLg~lg~~~~ 221 (939)
-...++..+..+++.+++.+|..|+++|..+......-+.-+..+..+.++.+|....+. +|..|+.+|..+.-...
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 344578888999999999999999999999976432112223346678899999877554 99999999999874221
Q ss_pred hhcccccccccchhHHHHHHHhhc-CCCH-------------HHHHHHHHHHhcccCCcH---HHHHHHhhHHHhhhhhh
Q 002304 222 ACIDEKNRIDCSDVVFIQLCSMIR-DMRM-------------EVRVEAFNALGKVGMISE---IVLLQTLSKKVLGATKE 284 (939)
Q Consensus 222 ~~~~~~~~i~lvddaf~aLc~aL~-D~s~-------------~VR~~AA~ALG~i~~vs~---~~LlqtL~kklm~~lk~ 284 (939)
+..--. ..+ +-+++.+|+.+|. |+.. .-+..|+.||+++...+. +-+.+ +
T Consensus 534 p~~~f~-~~~-~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~----~------- 600 (778)
T 3opb_A 534 PGLIFK-KYS-ALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCK----H------- 600 (778)
T ss_dssp HHHHSS-SSC-STTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHH----H-------
T ss_pred HHHHcC-CCc-cccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHH----H-------
Confidence 110000 011 1379999999998 3332 238899999999966541 11111 1
Q ss_pred hhhccccchhhhhhhh-hcchHHHhhccCCCcHHHHHHHHHHHHhccccch----hhH----HH---HHHHHHHHhcCCC
Q 002304 285 KKFHSLGAAECFEISA-SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE----KFA----GE---ALNLLVDMLNDDS 352 (939)
Q Consensus 285 kr~~~~l~~d~~~l~~-s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~----~fA----~~---ALd~LvdmLnDe~ 352 (939)
++. .++.+.++..|.++...||++|++.++.|..... .|. .+ -++.|+.+++.++
T Consensus 601 -------------Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D 667 (778)
T 3opb_A 601 -------------IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD 667 (778)
T ss_dssp -------------HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC
T ss_pred -------------HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC
Confidence 123 3688999999999999999999999999986332 232 12 3889999999999
Q ss_pred HHHHHHHHHHHhhhhh-ccc---ccch-hhHHHHHHHhcCC--CCHHHHHHHHHHHhhc
Q 002304 353 VTVRLQALETMHIMVT-CEH---LNLE-DKHMHMFLGTLVD--NSELVRCAARKILKLV 404 (939)
Q Consensus 353 ~~VRl~Aa~ALgkI~~-~~~---i~l~-E~aL~~LL~~L~D--~~~dVR~aA~~aLg~i 404 (939)
..+|.+|+.||..+.. .+. .-+. ++.++.++++|+| ++.++|..+..++..+
T Consensus 668 ~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 668 VESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGL 726 (778)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 9999999999999952 111 1122 3688899999999 8999998887766554
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.80 E-value=1.8e-07 Score=104.17 Aligned_cols=276 Identities=12% Similarity=0.005 Sum_probs=170.8
Q ss_pred HHHhhhccccCC-ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHH
Q 002304 133 LWLLRNAERFNV-RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR 211 (939)
Q Consensus 133 ~~~~~~~~~~~v-~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~ 211 (939)
+.++-+|+.||- ....++..+.++++.+|...||..--.+..+.+... .+. -....+.+=++|+++.+|-.|++
T Consensus 52 l~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~----e~i-Lv~Nsl~kDl~~~N~~iR~lALR 126 (355)
T 3tjz_B 52 LYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE----DVI-IVTSSLTKDMTGKEDSYRGPAVR 126 (355)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS----CGG-GGHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH----HHH-HHHHHHHhhcCCCcHhHHHHHHH
Confidence 456666887663 335677788899999999999999888887765421 111 12456777789999999999999
Q ss_pred HHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhcccc
Q 002304 212 VVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLG 291 (939)
Q Consensus 212 aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l 291 (939)
.|+.+... .++.+....+-+++.|.++.||..|+-+..++-...++.+..
T Consensus 127 tL~~I~~~-----------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~------------------- 176 (355)
T 3tjz_B 127 ALCQITDS-----------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKR------------------- 176 (355)
T ss_dssp HHHHHCCT-----------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHT-------------------
T ss_pred HHhcCCCH-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHH-------------------
Confidence 99998752 345677888999999999999999999999987666665432
Q ss_pred chhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC---CHHHHHHHHHHHhhhhh
Q 002304 292 AAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD---SVTVRLQALETMHIMVT 368 (939)
Q Consensus 292 ~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe---~~~VRl~Aa~ALgkI~~ 368 (939)
..+.+-.++.|.++.|-..|+..|.++.... ..++..|+..+++. ++.....-++.+++++.
T Consensus 177 -----------~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d----~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 177 -----------WVNEAQEAASSDNIMVQYHALGLLYHVRKND----RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp -----------THHHHHHHTTCSSHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred -----------HHHHHHHHhcCCCccHHHHHHHHHHHHHhhc----hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 2234455778999999999999998887543 34777777777764 57777778898888875
Q ss_pred cccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhh-ccCccchHHHHHHHHHhhcccccc
Q 002304 369 CEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENL-KIYPQDEADVFSVLFFIGRSHGNF 447 (939)
Q Consensus 369 ~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L-~~~peDr~~I~~aL~~LG~~H~~l 447 (939)
...-...++.++.+...|++.++-|--+++.++-.+...+...+..++..|..-| ...|..|-.+.+.|.+|-..||+.
T Consensus 242 ~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~ 321 (355)
T 3tjz_B 242 DEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA 321 (355)
T ss_dssp ---------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC----------
T ss_pred ccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH
Confidence 3212334567788999999999999988888776654322222222333332222 466777888889999999999999
Q ss_pred hHHHHHHHhhh
Q 002304 448 AACIIKEVCQE 458 (939)
Q Consensus 448 v~~lv~~Ll~~ 458 (939)
+..+-.++.+-
T Consensus 322 v~~~n~~ie~l 332 (355)
T 3tjz_B 322 VTACNLDLENL 332 (355)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 98777766554
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.75 E-value=6.6e-07 Score=91.31 Aligned_cols=100 Identities=21% Similarity=0.201 Sum_probs=68.8
Q ss_pred hHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHH
Q 002304 304 AGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFL 383 (939)
Q Consensus 304 ~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL 383 (939)
+.-+...|+|.+..=|.+|..=++.+|...+.+...-+|-|..+|+|.++-||..|+++|++++... -+++ ..+...+
T Consensus 146 ~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklR-kii~~kl 223 (253)
T 2db0_A 146 VRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLR-KVVIKRL 223 (253)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHH-HHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHH-HHHHHHH
Confidence 3345566777777777777777777777666666666777788888888888888888888877421 1232 4555666
Q ss_pred HhcCCCCHHHHHHHHHHHhhcc
Q 002304 384 GTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 384 ~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
+-++|.+..|.+.+.++|+.+-
T Consensus 224 ~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 224 EELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHH
Confidence 6777777777777777666643
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.72 E-value=1.1e-06 Score=89.59 Aligned_cols=214 Identities=15% Similarity=0.136 Sum_probs=166.3
Q ss_pred hhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhh-cCCCHHHHHHHHHHHhcccCC
Q 002304 187 IQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMI-RDMRMEVRVEAFNALGKVGMI 265 (939)
Q Consensus 187 ~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL-~D~s~~VR~~AA~ALG~i~~v 265 (939)
-.+++..++..|.||-+.||..|+..+..+...+. .+.+-...+|..++ .|+....-++-|++||.+..+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~---------el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i 100 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE---------DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE 100 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG---------GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH---------HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh
Confidence 34578889999999999999999999998876431 23345666777785 688888889999999998655
Q ss_pred cHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHH
Q 002304 266 SEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLV 345 (939)
Q Consensus 266 s~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lv 345 (939)
-++.+- ..++.+-.-+.=-+...|..-.++|+++...+|++....+.-+.
T Consensus 101 ~Pe~v~------------------------------~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~ 150 (253)
T 2db0_A 101 KPELVK------------------------------SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFM 150 (253)
T ss_dssp CHHHHH------------------------------HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CHHHHH------------------------------hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHH
Confidence 444432 23334433333335699999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhcc
Q 002304 346 DMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKI 425 (939)
Q Consensus 346 dmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~ 425 (939)
.|+.|.+..=|+.|.+-++.||..+ ...--.-+|.+.++|.|.+.-||..+.++|+.+..-+.. +..++..-+.-+++
T Consensus 151 smltskd~~Dkl~aLnFi~alGen~-~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D 228 (253)
T 2db0_A 151 SMLSSKNREDKLTALNFIEAMGENS-FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELND 228 (253)
T ss_dssp HHTSCSSHHHHHHHHHHHHTCCTTT-HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCC
T ss_pred HHhcCCChHHHHHHHHHHHHHhccC-ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcC
Confidence 9999999999999999999999643 222234789999999999999999999999998766555 67777777776666
Q ss_pred Cccc-hHHHHHHHHHhh
Q 002304 426 YPQD-EADVFSVLFFIG 441 (939)
Q Consensus 426 ~peD-r~~I~~aL~~LG 441 (939)
-.++ .+.+.++|.+|.
T Consensus 229 ~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 229 TSSLVNKTVKEGISRLL 245 (253)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 5554 667777777763
No 72
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.9e-07 Score=98.48 Aligned_cols=182 Identities=10% Similarity=0.062 Sum_probs=134.0
Q ss_pred HHHhhCCCCchHHHHHHHHHHH-hcchhhhhcccccccccchhHHHHHHHhh-cCCCHHHHHHHHHHHhcccCCcHHHHH
Q 002304 194 AVELLRDHEDCVRCAAVRVVSE-WGKMLIACIDEKNRIDCSDVVFIQLCSMI-RDMRMEVRVEAFNALGKVGMISEIVLL 271 (939)
Q Consensus 194 l~~lL~Ddd~~VR~aAV~aLg~-lg~~~~~~~~~~~~i~lvddaf~aLc~aL-~D~s~~VR~~AA~ALG~i~~vs~~~Ll 271 (939)
+.+.+++.++.-|.+|+..|+. +......... .... ..+.+..|+..+ +|.+..||..|+++||.|.. .+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~--~~~~-~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~----~l- 92 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKS--TSQN-YSNLLGIYGHIIQKDANIQAVALAAQSVELICD----KL- 92 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCC--TTCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH----HH-
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCcccc--Cccc-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH----hc-
Confidence 4556899999999999999999 7532100000 0011 246788999999 89999999999999999852 11
Q ss_pred HHhh-HHHhhhhhhhhhccccchhhhh-hhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc-h----hhHHHHHHHH
Q 002304 272 QTLS-KKVLGATKEKKFHSLGAAECFE-ISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS-E----KFAGEALNLL 344 (939)
Q Consensus 272 qtL~-kklm~~lk~kr~~~~l~~d~~~-l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s-~----~fA~~ALd~L 344 (939)
. + .|+ --....+++++..+.|....||.+|..+|-.+.... | ......++.|
T Consensus 93 ---~~~------------------~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l 151 (249)
T 2qk1_A 93 ---KTP------------------GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDI 151 (249)
T ss_dssp ---CTT------------------TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHH
T ss_pred ---ccc------------------cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHH
Confidence 0 0 011 012346789999999999999999888775544321 1 0124688999
Q ss_pred HHHhcCCCHHHHHHHHHHHhhhhhcccc---c----chhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 345 VDMLNDDSVTVRLQALETMHIMVTCEHL---N----LEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 345 vdmLnDe~~~VRl~Aa~ALgkI~~~~~i---~----l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
...++..+|.||..++..|+........ . +.++.+|.+...|.|.+++||.++..+++.+
T Consensus 152 ~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 152 LEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999853321 1 1267899999999999999999999999884
No 73
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.68 E-value=8.1e-07 Score=104.84 Aligned_cols=270 Identities=11% Similarity=0.031 Sum_probs=180.9
Q ss_pred ccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchh-hhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcch
Q 002304 141 RFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVD-LIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKM 219 (939)
Q Consensus 141 ~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~-l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~ 219 (939)
..+++... ++.+..+++.+++.++..|+.+|..+.......... ...+..+.++++|+.+++.|+..|+.+|+.++..
T Consensus 42 ~~~~~~~~-i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 42 PPNWRQPE-LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCCCCCCC-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred CCCccccc-HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 45565544 566777889999999999999998886421100001 1234579999999999999999999999998741
Q ss_pred hhhhcccccccccc-hhHHHHHHHhhcC-CCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhh
Q 002304 220 LIACIDEKNRIDCS-DVVFIQLCSMIRD-MRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFE 297 (939)
Q Consensus 220 ~~~~~~~~~~i~lv-ddaf~aLc~aL~D-~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~ 297 (939)
- ++ ..+...+ ..++..|+..|.. .+..++..|+.+|..+...++.- ..
T Consensus 121 ~---~~-~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k--------------------------~~ 170 (584)
T 3l6x_A 121 R---DQ-DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK--------------------------ME 170 (584)
T ss_dssp S---CH-HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH--------------------------HH
T ss_pred C---CH-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh--------------------------HH
Confidence 0 00 0011111 3578899999986 78999999999999986532111 01
Q ss_pred hhhhcchHHHhhcc------------------CCCcHHHHHHHHHHHHhccccchhhH------HHHHHHHHHHhcC---
Q 002304 298 ISASAAAGTFVHGF------------------EDEFYEVRKSACSSLGSLVILSEKFA------GEALNLLVDMLND--- 350 (939)
Q Consensus 298 l~~s~a~gaLI~~L------------------eDE~~eVR~aAaeALGkL~~~s~~fA------~~ALd~LvdmLnD--- 350 (939)
++ .+++++|++.| .-++.+|+..|+.+|..|+..+++.- ...++.|+..+++
T Consensus 171 I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~ 249 (584)
T 3l6x_A 171 IV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIG 249 (584)
T ss_dssp HH-HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HH-hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhc
Confidence 12 23567777655 12367999999999999986544321 1245788888763
Q ss_pred ---CCHHHHHHHHHHHhhhhhccc---------------------------c--cchhhHHHHHHHhcC-CCCHHHHHHH
Q 002304 351 ---DSVTVRLQALETMHIMVTCEH---------------------------L--NLEDKHMHMFLGTLV-DNSELVRCAA 397 (939)
Q Consensus 351 ---e~~~VRl~Aa~ALgkI~~~~~---------------------------i--~l~E~aL~~LL~~L~-D~~~dVR~aA 397 (939)
.+......|+.+|.+++.... + -++..+++.++.+|+ ..+++++++|
T Consensus 250 ~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~A 329 (584)
T 3l6x_A 250 QKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329 (584)
T ss_dssp TTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHH
Confidence 566788889999988763100 0 012356788999996 4689999999
Q ss_pred HHHHhhccCCc---hhHH------HHHHHHHHHhhccC-ccchHHHHHHHHHhhc
Q 002304 398 RKILKLVKTPK---LEFF------RLFIDGLLENLKIY-PQDEADVFSVLFFIGR 442 (939)
Q Consensus 398 ~~aLg~i~l~~---~~~l------~~~l~~LL~~L~~~-peDr~~I~~aL~~LG~ 442 (939)
..+|..+...+ ...+ +..+..|.+.|..- ++.++.+.++|+.|..
T Consensus 330 a~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~ 384 (584)
T 3l6x_A 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384 (584)
T ss_dssp HHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 99997774322 1111 23466666665543 2347889999999964
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.68 E-value=2.5e-07 Score=97.49 Aligned_cols=223 Identities=14% Similarity=0.150 Sum_probs=167.4
Q ss_pred HHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc--ccccchhhhhhHHHHHHHhhCCCCchHHHHH
Q 002304 132 RLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH--VVFEDVDLIQGCCCRAVELLRDHEDCVRCAA 209 (939)
Q Consensus 132 ~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~--~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aA 209 (939)
+.|=.+.+..+--..++.+..+.++++|.|+.|+..|+.+|.++-.+ +. ...-.++..++.++++++++|+-|=..|
T Consensus 17 ~sWkiK~a~ela~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~-l~~~~~e~~Ld~iI~llk~~dEkval~A 95 (265)
T 3b2a_A 17 LSWQILDAVSLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSD-LRMMVLERHLDVFINALSQENEKVTIKA 95 (265)
T ss_dssp HTTCHHHHHHHHHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred HHhhHHHHHHHHHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 34545554444444567888999999999999999999999999776 32 2334456788999999999999999999
Q ss_pred HHHHHHhcchhhhhcccccccccchhHHHH----HHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhh
Q 002304 210 VRVVSEWGKMLIACIDEKNRIDCSDVVFIQ----LCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEK 285 (939)
Q Consensus 210 V~aLg~lg~~~~~~~~~~~~i~lvddaf~a----Lc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~k 285 (939)
+++|+.+-. .+++.+..|.+ +.+.+.+++.-.|..||+.||+++-.+.
T Consensus 96 ~r~L~~LLe----------~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------------------ 147 (265)
T 3b2a_A 96 LRALGYLVK----------DVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------------------ 147 (265)
T ss_dssp HHHHHHHHT----------TCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------------------
T ss_pred HHHHHHHHc----------CCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------------------
Confidence 999998764 34555555655 4455678999999999999999954321
Q ss_pred hhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002304 286 KFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS--EKFAGEALNLLVDMLNDDSVTVRLQALETM 363 (939)
Q Consensus 286 r~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s--~~fA~~ALd~LvdmLnDe~~~VRl~Aa~AL 363 (939)
...+.+.+...++-.+.+|..+|..+|-.++..+ ++.....++.+-++++.+|+.++-.|+.+|
T Consensus 148 --------------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~L 213 (265)
T 3b2a_A 148 --------------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVL 213 (265)
T ss_dssp --------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHH
T ss_pred --------------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1233445666778889999999999998888643 345567889999999999999999999999
Q ss_pred hhhhhcccccchhhHHHHHHHhc--------CCCCHHHHHHHHHH
Q 002304 364 HIMVTCEHLNLEDKHMHMFLGTL--------VDNSELVRCAARKI 400 (939)
Q Consensus 364 gkI~~~~~i~l~E~aL~~LL~~L--------~D~~~dVR~aA~~a 400 (939)
-+|... .+.++.++.+.+.+ -...|.+|..|...
T Consensus 214 e~ils~---pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 214 EKALSF---PLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHTTS---CCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHcC---cccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 999852 34455555555433 35566777666553
No 75
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.54 E-value=2.9e-06 Score=102.52 Aligned_cols=275 Identities=10% Similarity=0.096 Sum_probs=183.6
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcc-cccchhhhhhHHHHHHHhhCC-CCchHHHHHHHHHHHhcchhh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHV-VFEDVDLIQGCCCRAVELLRD-HEDCVRCAAVRVVSEWGKMLI 221 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~-~~~~~~l~~~i~~~l~~lL~D-dd~~VR~aAV~aLg~lg~~~~ 221 (939)
+.-..+...+.+++.+++...|+.|+++|..+.-.. +...-.-..+++..++.++++ ++.++=..|+..|+-+.....
T Consensus 330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~ 409 (778)
T 3opb_A 330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE 409 (778)
T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCc
Confidence 455678888999999988888999999999986542 111101123467888999986 778888888888876654321
Q ss_pred h--------------------hcccc-c------------ccc-cchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcH
Q 002304 222 A--------------------CIDEK-N------------RID-CSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISE 267 (939)
Q Consensus 222 ~--------------------~~~~~-~------------~i~-lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~ 267 (939)
. ..+.+ . ... .-..++..|+.++..+++.+|..|+++|+.+....+
T Consensus 410 ~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~ 489 (778)
T 3opb_A 410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN 489 (778)
T ss_dssp CCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG
T ss_pred ccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 0 00000 0 001 112467789999999999999999999999953211
Q ss_pred HHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHH---HHHHHHHHHHhccc-cchhhH------
Q 002304 268 IVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYE---VRKSACSSLGSLVI-LSEKFA------ 337 (939)
Q Consensus 268 ~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~e---VR~aAaeALGkL~~-~s~~fA------ 337 (939)
. +..++..|+++++++.|...... +|..|+.||.++.. .+|..+
T Consensus 490 ~--------------------------R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~ 543 (778)
T 3opb_A 490 F--------------------------IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA 543 (778)
T ss_dssp G--------------------------HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred H--------------------------HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence 1 11223578889999999776544 89999999999883 334432
Q ss_pred HHHHHHHHHHhcC-CCH-------------HHHHHHHHHHhhhhhcc-------cc-cchh-hHHHHHHHhcCCCCHHHH
Q 002304 338 GEALNLLVDMLND-DSV-------------TVRLQALETMHIMVTCE-------HL-NLED-KHMHMFLGTLVDNSELVR 394 (939)
Q Consensus 338 ~~ALd~LvdmLnD-e~~-------------~VRl~Aa~ALgkI~~~~-------~i-~l~E-~aL~~LL~~L~D~~~dVR 394 (939)
..++++|+.+|.. ... .-+..|+.||++|+... +. -+.+ .+++.|..+|.+++..||
T Consensus 544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 2689999999982 221 23889999999999642 11 2332 589999999999999999
Q ss_pred HHHHHHHhhccCCchh---HH-----HH---HHHHHHHhhccC-ccchHHHHHHHHHhhccc
Q 002304 395 CAARKILKLVKTPKLE---FF-----RL---FIDGLLENLKIY-PQDEADVFSVLFFIGRSH 444 (939)
Q Consensus 395 ~aA~~aLg~i~l~~~~---~l-----~~---~l~~LL~~L~~~-peDr~~I~~aL~~LG~~H 444 (939)
++|.+++..+--.... .+ .. -++-|+..++.. ++.|+.+.++|..+-..+
T Consensus 624 rAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999776432211 11 01 144555555432 233888889999885434
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.50 E-value=1.2e-05 Score=89.52 Aligned_cols=197 Identities=13% Similarity=0.097 Sum_probs=149.8
Q ss_pred CChhhHHHHHHhhhcCC--CHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhh
Q 002304 144 VRPHLLFTVCLGLTKDP--YPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLI 221 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~--Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~ 221 (939)
..+..+++. ...++++ ||.-++.++.-+..+.-.|...+..-...++...++++..+|...|+..--.+..+.+.
T Consensus 22 ~~k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-- 98 (355)
T 3tjz_B 22 LEKSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-- 98 (355)
T ss_dssp CCHHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--
T ss_pred chHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--
Confidence 444456666 4567777 77777778888888777765333333456788889999999999999888888777653
Q ss_pred hhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhh
Q 002304 222 ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISAS 301 (939)
Q Consensus 222 ~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s 301 (939)
.+ ++ --+...|.+=++|+++.||-.|-++|+++...+ + -.
T Consensus 99 --~~---e~---iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m------------------------------~~ 138 (355)
T 3tjz_B 99 --AE---DV---IIVTSSLTKDMTGKEDSYRGPAVRALCQITDST--M------------------------------LQ 138 (355)
T ss_dssp --SS---CG---GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--T------------------------------HH
T ss_pred --HH---HH---HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--H------------------------------HH
Confidence 01 11 135677888899999999999999999997522 1 12
Q ss_pred cchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHH
Q 002304 302 AAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHM 381 (939)
Q Consensus 302 ~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~ 381 (939)
...+.+.++|.|.++.||++|+-+..++-...|+..++-++.+.++++|.++.|-.+|+.+|..|...+ ..++..
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-----~~a~~k 213 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-----RLAVSK 213 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-----HHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-----hHHHHH
Confidence 234567889999999999999999999999999999888999999999999999999999999998533 224445
Q ss_pred HHHhcCC
Q 002304 382 FLGTLVD 388 (939)
Q Consensus 382 LL~~L~D 388 (939)
++..|.+
T Consensus 214 Lv~~l~~ 220 (355)
T 3tjz_B 214 MISKFTR 220 (355)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 5554443
No 77
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.37 E-value=1.8e-06 Score=91.05 Aligned_cols=143 Identities=17% Similarity=0.125 Sum_probs=106.1
Q ss_pred hHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHH-HhcCCCHHHHHHHHHHHhhhhh-cccccchhhHHHH
Q 002304 304 AGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVD-MLNDDSVTVRLQALETMHIMVT-CEHLNLEDKHMHM 381 (939)
Q Consensus 304 ~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lvd-mLnDe~~~VRl~Aa~ALgkI~~-~~~i~l~E~aL~~ 381 (939)
.+.+-.+..|+..+||..|+..||++ ... ..+++.+.. ...|+.|.||-.++.+++++.. .+ .|..++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~----~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~----pe~~l~~ 143 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD----KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE----YKKALPI 143 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS----HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC----TTTTHHH
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc----HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC----HHHHHHH
Confidence 34455566788899999999999998 322 568999998 8899999999999999999873 22 2446889
Q ss_pred HHHhcCCCCHHHHHHHHHHHhh-ccCCchhHHHHHHHHHHHhhccCccc--hHHHHHHHHHhhcccccchHHHHHHH
Q 002304 382 FLGTLVDNSELVRCAARKILKL-VKTPKLEFFRLFIDGLLENLKIYPQD--EADVFSVLFFIGRSHGNFAACIIKEV 455 (939)
Q Consensus 382 LL~~L~D~~~dVR~aA~~aLg~-i~l~~~~~l~~~l~~LL~~L~~~peD--r~~I~~aL~~LG~~H~~lv~~lv~~L 455 (939)
+..-++|++..||++|.+.+.- ...+....--..+-.++.++..+++- |++|.++|.++.|.||++|...+.++
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~w 220 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKNW 220 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHHh
Confidence 9999999999999999886421 11111111111244555556666653 99999999999999999997666554
No 78
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.35 E-value=5.5e-06 Score=87.27 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=110.7
Q ss_pred HHHHHHHhhCCCCc--hHHHHHHHHHHHhcchhhhhcccccccccc-hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCc
Q 002304 190 CCCRAVELLRDHED--CVRCAAVRVVSEWGKMLIACIDEKNRIDCS-DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMIS 266 (939)
Q Consensus 190 i~~~l~~lL~Ddd~--~VR~aAV~aLg~lg~~~~~~~~~~~~i~lv-ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs 266 (939)
.++.++++|+.+++ .|+..|+..|..+...- + ..+...+ ..++.+|+++|+.++..|+..|+++|+.+..-+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~----~-~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK----S-EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC----H-HHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC----c-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 36889999998888 99999999888765311 0 0011111 247889999999999999999999999995432
Q ss_pred HHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC-CCcHHHHHHHHHHHHhcccc---chhhHHHHHH
Q 002304 267 EIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE-DEFYEVRKSACSSLGSLVIL---SEKFAGEALN 342 (939)
Q Consensus 267 ~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le-DE~~eVR~aAaeALGkL~~~---s~~fA~~ALd 342 (939)
++. | ..+...|++++|++.|. ..+++||+.|+.+|..|+.. ...+...+++
T Consensus 84 ~~n------k-------------------~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~ 138 (233)
T 3tt9_A 84 NDN------K-------------------LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALL 138 (233)
T ss_dssp HHH------H-------------------HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHH
T ss_pred HHH------H-------------------HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHH
Confidence 222 0 11236789999999997 47899999999999988752 2334567889
Q ss_pred HHHHHhc-------C---------CCHHHHHHHHHHHhhhhh
Q 002304 343 LLVDMLN-------D---------DSVTVRLQALETMHIMVT 368 (939)
Q Consensus 343 ~LvdmLn-------D---------e~~~VRl~Aa~ALgkI~~ 368 (939)
+|++++. | .+..|+.+|+.+|..++.
T Consensus 139 ~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 139 TLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180 (233)
T ss_dssp HHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc
Confidence 9988653 1 377999999999999874
No 79
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.11 E-value=4.3e-05 Score=80.70 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=141.2
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc-cCCc--
Q 002304 190 CCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV-GMIS-- 266 (939)
Q Consensus 190 i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs-- 266 (939)
.+..+..+|.|+|+.|+..|..+|+.+=.... ..-..+.+.+.|..+...+.+++.+|-..|.+.|+.+ .+++
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~----~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRAD----SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhcc----ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 36778999999999999999999997654210 0012344578899999999999999999999999998 5543
Q ss_pred HHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 002304 267 EIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVD 346 (939)
Q Consensus 267 ~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lvd 346 (939)
++-. ..+..||...+.+.+.-.|..|++.||++... .++.+.++.|..
T Consensus 110 ~~~y------------------------------~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~--~~~~~V~~~l~s 157 (265)
T 3b2a_A 110 SKTF------------------------------LKAAKTLVSLLESPDDMMRIETIDVLSKLQPL--EDSKLVRTYINE 157 (265)
T ss_dssp HHHH------------------------------HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS--CCCHHHHHHHHH
T ss_pred HHHH------------------------------HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc--cchHHHHHHHHH
Confidence 3321 12455778888889999999999999999543 345789999999
Q ss_pred HhcCCCHHHHHHHHHHHhhhhhcc-cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 347 MLNDDSVTVRLQALETMHIMVTCE-HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 347 mLnDe~~~VRl~Aa~ALgkI~~~~-~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
++...+.+|...|+.+|..|+... .-.+-++.+.-+-.+|+.+++.+++-|-.++..+
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKA 216 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999622 2234467788889999999999998887766554
No 80
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.11 E-value=1.8e-05 Score=83.38 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=107.7
Q ss_pred HHHHHHHhhcCCCH--HHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCC
Q 002304 236 VFIQLCSMIRDMRM--EVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFED 313 (939)
Q Consensus 236 af~aLc~aL~D~s~--~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeD 313 (939)
.+..++++|+.+++ .|+..|+..|..+..-.++. +..+...+++++||..|..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~-------------------------r~~I~~~G~Ip~LV~lL~s 63 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEA-------------------------RKRVNQLRGILKLLQLLKV 63 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHH-------------------------HHHHHHTTHHHHHHHGGGC
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHH-------------------------HHHHHHcCCHHHHHHHHcC
Confidence 35788899987777 99999999998874211111 0112357889999999999
Q ss_pred CcHHHHHHHHHHHHhccccchhh----H-HHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhhcc--cccchhhHHHHHHHh
Q 002304 314 EFYEVRKSACSSLGSLVILSEKF----A-GEALNLLVDMLN-DDSVTVRLQALETMHIMVTCE--HLNLEDKHMHMFLGT 385 (939)
Q Consensus 314 E~~eVR~aAaeALGkL~~~s~~f----A-~~ALd~LvdmLn-De~~~VRl~Aa~ALgkI~~~~--~i~l~E~aL~~LL~~ 385 (939)
++.+||..|+.+|+.++..+++- . ..+++.|+.+|. ..++.||..|+.+|+.++... +..+.+..+++|...
T Consensus 64 ~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~l 143 (233)
T 3tt9_A 64 QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTEN 143 (233)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHH
Confidence 99999999999999998654432 1 347999999998 479999999999999998633 233445677888776
Q ss_pred cC-------C---------CCHHHHHHHHHHHhhccC
Q 002304 386 LV-------D---------NSELVRCAARKILKLVKT 406 (939)
Q Consensus 386 L~-------D---------~~~dVR~aA~~aLg~i~l 406 (939)
+. | .+++|+..+..+|..+..
T Consensus 144 l~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 144 IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180 (233)
T ss_dssp CCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred HhccccCCcccccccccccchHHHHHHHHHHHHHHhc
Confidence 53 1 366888888777666543
No 81
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.95 E-value=4.1e-05 Score=80.88 Aligned_cols=190 Identities=13% Similarity=0.040 Sum_probs=123.2
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccC-CcHHHHHH
Q 002304 194 AVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGM-ISEIVLLQ 272 (939)
Q Consensus 194 l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~-vs~~~Llq 272 (939)
+-+.|.+.+..+|.+|++.|..+-.........+............+..++.|.+..|...|.++|..+-. ........
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45779999999999999998764332111111111122222334567788899999999999999987632 21111000
Q ss_pred HhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhh-ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC
Q 002304 273 TLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVH-GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD 351 (939)
Q Consensus 273 tL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~-~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe 351 (939)
. .+.......++.++. +|.|....+|..|.+++-.+..... .....++.+...++..
T Consensus 94 ~---------------------~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~~~e~l~~~l~~K 151 (278)
T 4ffb_C 94 A---------------------HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-SITQSVELVIPFFEKK 151 (278)
T ss_dssp H---------------------HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHHHHHHHGGGGGCS
T ss_pred c---------------------hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcc
Confidence 0 000012345667775 5899999999999998866542110 1135678899999999
Q ss_pred CHHHHHHHHHHHhhhhh-cccccch-----hhHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 352 SVTVRLQALETMHIMVT-CEHLNLE-----DKHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 352 ~~~VRl~Aa~ALgkI~~-~~~i~l~-----E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
++.||..++..|.++-. .|.-.+. ...++.+..+|+|.+++||.+|..+++.+.
T Consensus 152 npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 152 LPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999988753 1211111 234556777899999999999999888763
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.89 E-value=0.00093 Score=82.26 Aligned_cols=220 Identities=10% Similarity=0.107 Sum_probs=128.1
Q ss_pred CchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhc------CCCHHHHHHHHHHHhcccC--C-cHHHHHH
Q 002304 202 EDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIR------DMRMEVRVEAFNALGKVGM--I-SEIVLLQ 272 (939)
Q Consensus 202 d~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~------D~s~~VR~~AA~ALG~i~~--v-s~~~Llq 272 (939)
..++|.+|...|..++..... ......+..+...+. +++|+.|.+|-.++|.+.. . ....
T Consensus 374 ~~s~R~aa~~~L~~l~~~~~~--------~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~--- 442 (960)
T 1wa5_C 374 TDTRRRACTDFLKELKEKNEV--------LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG--- 442 (960)
T ss_dssp --CHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB---
T ss_pred ccCcHHHHHHHHHHHHHHcch--------hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC---
Confidence 347999999999988864310 011223444445555 7899999999999998832 0 0000
Q ss_pred HhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCC---cHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHh
Q 002304 273 TLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDE---FYEVRKSACSSLGSLVIL-SEKFAGEALNLLVDML 348 (939)
Q Consensus 273 tL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE---~~eVR~aAaeALGkL~~~-s~~fA~~ALd~LvdmL 348 (939)
+. -..+.+++ ..-....++..|.|+ ...||.+|+..||+++.. .+++....++.++..+
T Consensus 443 ------~~----------~~~~~~~l-~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L 505 (960)
T 1wa5_C 443 ------VS----------STNNLLNV-VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFL 505 (960)
T ss_dssp ------CC----------CBCTTCCH-HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT
T ss_pred ------cc----------cccccccH-HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Confidence 00 00000000 000011123344666 899999999999998754 4566788899999999
Q ss_pred cCCCHHHHHHHHHHHhhhhhcc-----------cc---cchhhHHHHHHHhcCCC---------CHHHHHHHHHHHhhcc
Q 002304 349 NDDSVTVRLQALETMHIMVTCE-----------HL---NLEDKHMHMFLGTLVDN---------SELVRCAARKILKLVK 405 (939)
Q Consensus 349 nDe~~~VRl~Aa~ALgkI~~~~-----------~i---~l~E~aL~~LL~~L~D~---------~~dVR~aA~~aLg~i~ 405 (939)
.|++..||..|+.||..+.... +- ..-+..++.|+.+++.. +..+=+++..+....+
T Consensus 506 ~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~ 585 (960)
T 1wa5_C 506 QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE 585 (960)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence 9999999999999999976421 01 12256677777777763 3444444444444433
Q ss_pred CCchhHHHHHHHHHHHhhc---cCccch---HHHHHHHHHhhcc-cccchH
Q 002304 406 TPKLEFFRLFIDGLLENLK---IYPQDE---ADVFSVLFFIGRS-HGNFAA 449 (939)
Q Consensus 406 l~~~~~l~~~l~~LL~~L~---~~peDr---~~I~~aL~~LG~~-H~~lv~ 449 (939)
-.-..-+..++..|...+. +.|+|+ ..+++|++.+.+. +|+...
T Consensus 586 ~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 636 (960)
T 1wa5_C 586 DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP 636 (960)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH
Confidence 2222234445555444333 345553 4568888887765 444333
No 83
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.83 E-value=0.00055 Score=79.75 Aligned_cols=261 Identities=11% Similarity=0.074 Sum_probs=150.6
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccc---cchhhhhhHHHHHH-----HhhCCC-----CchHHHHHH
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVF---EDVDLIQGCCCRAV-----ELLRDH-----EDCVRCAAV 210 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~---~~~~l~~~i~~~l~-----~lL~Dd-----d~~VR~aAV 210 (939)
|.-+ +...+..-+-||.=.||..|+.||.++-..... -....-.++.-+++ ....|= -+-||..|+
T Consensus 171 WPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA 249 (800)
T 3oc3_A 171 NVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA 249 (800)
T ss_dssp SGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred CHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence 5555 677777778888999999999999987542110 00000001111111 111121 234666666
Q ss_pred HHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccc
Q 002304 211 RVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSL 290 (939)
Q Consensus 211 ~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~ 290 (939)
.+||.+ ..+.. + .+++..+...+..+.|.||..+--.|.-+.+ .+.+
T Consensus 250 QtLGaL-~hLp~------e----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D----LL~~------------------ 296 (800)
T 3oc3_A 250 YLLSRI-YPLIG------P----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE----FVED------------------ 296 (800)
T ss_dssp HHHHHH-TTTSC------S----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG----GCCC------------------
T ss_pred HHHHHH-HhCCh------h----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH----HHHH------------------
Confidence 666665 32210 0 1233444444466677777766555554411 1100
Q ss_pred cchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC--CHHHHHHHHHHHhhhhh
Q 002304 291 GAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD--SVTVRLQALETMHIMVT 368 (939)
Q Consensus 291 l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe--~~~VRl~Aa~ALgkI~~ 368 (939)
=.+++++++.||.|.+.+||..||++|.-++ .++.....+..|.+.|.|. ...---..+.-|.++-.
T Consensus 297 ---------Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 297 ---------KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp ---------HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence 1456889999999999999999999998887 3444456666777766643 33333333444444432
Q ss_pred cc-cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccc
Q 002304 369 CE-HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNF 447 (939)
Q Consensus 369 ~~-~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~l 447 (939)
.+ ........+|.|-..|.+..+.||+++.++|...- +...+..+.+.++= ++.++.++...++.+ ++ ..+
T Consensus 366 ~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~~~~LRLIFQNILL--E~neeIl~lS~~VWk---~r-~~L 437 (800)
T 3oc3_A 366 ENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS--EESIDFLVAEVVLI--EEKDEIREMAIKLLK---KR-RDL 437 (800)
T ss_dssp HCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--CHHHHHHHHHHHHH--CSCHHHHHHHHHHHH---TC-SCC
T ss_pred CCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--hhhHHHHHHHHHHh--CCcHHHHHHHHHHHH---HH-HHH
Confidence 11 12223478899999999999999999999887755 45566666666664 333333332222222 22 255
Q ss_pred hHHHHHHHhh
Q 002304 448 AACIIKEVCQ 457 (939)
Q Consensus 448 v~~lv~~Ll~ 457 (939)
+.+++.-+.+
T Consensus 438 l~~wi~L~Mt 447 (800)
T 3oc3_A 438 PKNLILHFMN 447 (800)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 6666665554
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.74 E-value=0.0017 Score=79.85 Aligned_cols=171 Identities=10% Similarity=0.049 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhC------CCCchHHHHHHHHHHHhcchhh-h---hccccccccc
Q 002304 163 YVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLR------DHEDCVRCAAVRVVSEWGKMLI-A---CIDEKNRIDC 232 (939)
Q Consensus 163 ~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~------Ddd~~VR~aAV~aLg~lg~~~~-~---~~~~~~~i~l 232 (939)
.+|++|...|..+...-. ..+.+.+++.+.+.+. +++...|.+|+.++|.++.... . .......+.+
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 688999999988875421 2344455666666665 6778899999999999864210 0 0000001121
Q ss_pred chhHH-HHHHHhhcCC---CHHHHHHHHHHHhcccC-CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHH
Q 002304 233 SDVVF-IQLCSMIRDM---RMEVRVEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTF 307 (939)
Q Consensus 233 vddaf-~aLc~aL~D~---s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaL 307 (939)
...+ ..+...+.|+ ++.||..|++.+|++.. ..++.+ ..+.+++
T Consensus 453 -~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l------------------------------~~~l~~l 501 (960)
T 1wa5_C 453 -VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL------------------------------IELMPIL 501 (960)
T ss_dssp -HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH------------------------------HHHHHHH
T ss_pred -HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH------------------------------HHHHHHH
Confidence 2222 3456677888 99999999999999954 343333 2345688
Q ss_pred hhccCCCcHHHHHHHHHHHHhcccc------------ch---hhHHHHHHHHHHHhcCCC---H--HHHHHHHHHHhhhh
Q 002304 308 VHGFEDEFYEVRKSACSSLGSLVIL------------SE---KFAGEALNLLVDMLNDDS---V--TVRLQALETMHIMV 367 (939)
Q Consensus 308 I~~LeDE~~eVR~aAaeALGkL~~~------------s~---~fA~~ALd~LvdmLnDe~---~--~VRl~Aa~ALgkI~ 367 (939)
+++|.|++..||.+|+.||..+... .. .+....++.|..+++... . .....+.++|+.+.
T Consensus 502 ~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv 581 (960)
T 1wa5_C 502 ATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVL 581 (960)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHH
Confidence 8899999999999999999885531 11 235778888888888741 1 13346677777765
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.58 E-value=0.0025 Score=79.33 Aligned_cols=254 Identities=10% Similarity=0.080 Sum_probs=175.3
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhccc---ccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhh
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVV---FEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIAC 223 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~---~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~ 223 (939)
..++..+.+.+.|--.. ..|+.++..+..... .....+ -++++.+..++.|....||.+|..++..+-..+.+.
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 46778888888876444 889999988874321 011122 246788999999999999999999988776643211
Q ss_pred cccccccccchhHHHHHHHhhcCC-CHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhc
Q 002304 224 IDEKNRIDCSDVVFIQLCSMIRDM-RMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASA 302 (939)
Q Consensus 224 ~~~~~~i~lvddaf~aLc~aL~D~-s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~ 302 (939)
-+.-++..|...+... -|+.+..|-+.++++...+++.+-..| +.
T Consensus 130 --------a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~--------------------------~~ 175 (986)
T 2iw3_A 130 --------AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM--------------------------PE 175 (986)
T ss_dssp --------GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH--------------------------HH
T ss_pred --------HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc--------------------------cc
Confidence 1244667788888655 599999999999999653344432222 45
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccccc--chhhH
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVI--LSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLN--LEDKH 378 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~--~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~--l~E~a 378 (939)
.+|.+-.+..|--.+|..+|..+|-++.. .+.++ ..-+|.|++.+.++.+ | -+++..|+.---...++ .--=.
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-~-~~~~~~l~~~tfv~~v~~~~l~~~ 252 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-V-PETVHLLGATTFVAEVTPATLSIM 252 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-H-HHHHHHHTTCCCCSCCCHHHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-h-HHHHHHhhcCeeEeeecchhHHHH
Confidence 78889999999999999999988855432 23333 3568999999999966 3 23455554321000000 00135
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhh-cc-CCchhHHHHHHHHHHHhhcc------CccchHHHHHHHHHh
Q 002304 379 MHMFLGTLVDNSELVRCAARKILKL-VK-TPKLEFFRLFIDGLLENLKI------YPQDEADVFSVLFFI 440 (939)
Q Consensus 379 L~~LL~~L~D~~~dVR~aA~~aLg~-i~-l~~~~~l~~~l~~LL~~L~~------~peDr~~I~~aL~~L 440 (939)
+|.|...|++....+.+.++.+... ++ +.+......++..|++.+++ +|+.|.-+-+|+..|
T Consensus 253 ~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 253 VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 7889999999888887777666654 45 45677788899999998886 677787776766666
No 86
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.56 E-value=0.007 Score=73.80 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhh----CCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHH
Q 002304 164 VREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELL----RDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQ 239 (939)
Q Consensus 164 VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL----~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~a 239 (939)
.|++|.+.|..+..-. +....+.+++.+.+.+ .+.+...|.+|+.++|.++..... + ..+.+..++..
T Consensus 423 ~r~~~~~~L~~~~~~~---~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~--~---~~~~l~~l~~~ 494 (963)
T 2x19_B 423 YRVDISDTLMYVYEML---GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV--N---YSDVVPGLIGL 494 (963)
T ss_dssp HHHHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS--S---CCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc--h---hhHHHHHHHHH
Confidence 3777777776665321 1123344556666667 678889999999999999875321 1 11223334442
Q ss_pred HHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHH
Q 002304 240 LCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVR 319 (939)
Q Consensus 240 Lc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR 319 (939)
+ ..+.++++.||..|++.+|++.. ++.. ..+. -..+++.++.+|.| ..||
T Consensus 495 l-~~l~~~~~~vr~~~~~~l~~~~~----~l~~--~~~~---------------------l~~vl~~l~~~l~~--~~V~ 544 (963)
T 2x19_B 495 I-PRISISNVQLADTVMFTIGALSE----WLAD--HPVM---------------------INSVLPLVLHALGN--PELS 544 (963)
T ss_dssp G-GGSCCCSHHHHHHHHHHHHHTHH----HHHH--CHHH---------------------HTTTHHHHHHHTTC--GGGH
T ss_pred H-HhCCCCcHHHHHHHHHHHHHHHH----HHHh--CHHH---------------------HHHHHHHHHHHhCC--chHH
Confidence 2 34456789999999999999853 1110 0000 13456778888877 6899
Q ss_pred HHHHHHHHhccccchh----hHHHHHHHHHHHhcC--CCHHHHHHHHHHHhhhhhccc----ccchhhHHHHHHHhcC--
Q 002304 320 KSACSSLGSLVILSEK----FAGEALNLLVDMLND--DSVTVRLQALETMHIMVTCEH----LNLEDKHMHMFLGTLV-- 387 (939)
Q Consensus 320 ~aAaeALGkL~~~s~~----fA~~ALd~LvdmLnD--e~~~VRl~Aa~ALgkI~~~~~----i~l~E~aL~~LL~~L~-- 387 (939)
.+|+.++.++....+. +....++.|..+++. -...+|..+.+|+|.+...-. ...-+..++.+...++
T Consensus 545 ~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~ 624 (963)
T 2x19_B 545 VSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL 624 (963)
T ss_dssp HHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888743222 346677778888774 468999999999999874111 1111233444444432
Q ss_pred ---CCCHHHHHHHHHHHhh
Q 002304 388 ---DNSELVRCAARKILKL 403 (939)
Q Consensus 388 ---D~~~dVR~aA~~aLg~ 403 (939)
+.+++.|+.+..+++.
T Consensus 625 ~~~~~~~~~~~~~~~~l~~ 643 (963)
T 2x19_B 625 AEEIPNPSNKLAIVHILGL 643 (963)
T ss_dssp HSSCSCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHH
Confidence 3467777755544443
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.55 E-value=0.0014 Score=80.30 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhh-CCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHH
Q 002304 160 PYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELL-RDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFI 238 (939)
Q Consensus 160 ~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL-~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~ 238 (939)
++...|.+|+.+++.+.+..........+.+++.+..+. .|.++.||..|+.++|.+...... .......++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~------~~~~l~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME------NPAYIPPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----------CHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc------CHHHHHHHHH
Confidence 678999999999999986432111122333445333333 367999999999999999875421 1134567888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCC--CcH
Q 002304 239 QLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFED--EFY 316 (939)
Q Consensus 239 aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeD--E~~ 316 (939)
.|...+ | +.|+..|+.+|.++.......|.+.+. .++ ..+...+.. -..
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll-------------------------~~l~~~l~~~~~~~ 600 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYAD-PLL-------------------------NACHASLNTGRMKN 600 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHH-------------------------HHHHHHHHSTTSCH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHH-HHH-------------------------HHHHHHHcCCCCCh
Confidence 888888 5 789999999999996433333333221 111 222233332 346
Q ss_pred HHHHHHHHHHHhccccc-----hhhHHHHHHHHHHHhc----CC--CHHHHHHHHHHHhhhh
Q 002304 317 EVRKSACSSLGSLVILS-----EKFAGEALNLLVDMLN----DD--SVTVRLQALETMHIMV 367 (939)
Q Consensus 317 eVR~aAaeALGkL~~~s-----~~fA~~ALd~LvdmLn----De--~~~VRl~Aa~ALgkI~ 367 (939)
.+|..+.+++|.+.... ..+....+++++..++ .. ++.-+..++.+|+.|+
T Consensus 601 ~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 601 SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 88888899988876432 1223445555555433 32 4555677777777776
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0037 Score=65.88 Aligned_cols=216 Identities=11% Similarity=0.014 Sum_probs=135.7
Q ss_pred HHhhhcCCCHHHHHHHHHHHHhhhhccccc--ch---hhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccc-
Q 002304 153 CLGLTKDPYPYVREAALNGLVCLLKHVVFE--DV---DLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE- 226 (939)
Q Consensus 153 L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~--~~---~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~- 226 (939)
+.+.+.+-+=.+|..|++.|.++....... +. .....+.+.+...+.|.+..|-..|+++|..+..........
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 457888999999999999998876432100 00 011223355677889999999999999999876532110000
Q ss_pred ccccccchhHHHHHHHh-hcCCCHHHHHHHHHHHhcccC--CcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcc
Q 002304 227 KNRIDCSDVVFIQLCSM-IRDMRMEVRVEAFNALGKVGM--ISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAA 303 (939)
Q Consensus 227 ~~~i~lvddaf~aLc~a-L~D~s~~VR~~AA~ALG~i~~--vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a 303 (939)
......+...+..|+.- +.|....+|..|..++-.+-. .+.. ..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~---------------------------------~~ 140 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT---------------------------------QS 140 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH---------------------------------HH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH---------------------------------HH
Confidence 00111234456667764 899999999999888766521 1111 12
Q ss_pred hHHHhhccCCCcHHHHHHHHHHHHhcccc------ch-hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchh
Q 002304 304 AGTFVHGFEDEFYEVRKSACSSLGSLVIL------SE-KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLED 376 (939)
Q Consensus 304 ~gaLI~~LeDE~~eVR~aAaeALGkL~~~------s~-~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E 376 (939)
...++.++....+.||.+++..|.++-.. ++ .+....++.+..+++|.+..||..|++.++.+-- -+.+
T Consensus 141 ~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~----~~G~ 216 (278)
T 4ffb_C 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK----VTGN 216 (278)
T ss_dssp HHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT----C---
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----HhCc
Confidence 34567788899999999999999775421 11 1234466788999999999999999999998752 1111
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 002304 377 KHMHMFLGTLVDNSELVRCAARKILKLVK 405 (939)
Q Consensus 377 ~aL~~LL~~L~D~~~dVR~aA~~aLg~i~ 405 (939)
......-..++|-.+-..+.+...+..+.
T Consensus 217 ~~~~~~~~~l~~lkp~~~k~le~~f~k~~ 245 (278)
T 4ffb_C 217 NSDLLEEILFKKLKPIQVKDLHKLFAKVG 245 (278)
T ss_dssp --------CTTSSCHHHHHHHHHHHSCCC
T ss_pred chhhhhhhhhhcCCHHHHHHHHHHHHhcC
Confidence 11112223456666777777766666543
No 89
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.35 E-value=0.0013 Score=76.76 Aligned_cols=188 Identities=16% Similarity=0.169 Sum_probs=116.2
Q ss_pred ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcc-cCCcHH--HHHHHhhHHHhhhhhhhhhccccchhhhh-hhhhcch
Q 002304 229 RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKV-GMISEI--VLLQTLSKKVLGATKEKKFHSLGAAECFE-ISASAAA 304 (939)
Q Consensus 229 ~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs~~--~LlqtL~kklm~~lk~kr~~~~l~~d~~~-l~~s~a~ 304 (939)
...|+-+.++.|+.-|-|+.|.||--||-+|.++ +..+.. .. ..+.+.+ ..|..--++-|+|. ..+..+
T Consensus 168 ~~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-~~~N~DL-----AvRLLCVLALDRFGDYVSDqV- 240 (800)
T 3oc3_A 168 PIENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-IRVDSKL-----FSKIYEILVTDKFNDFVDDRT- 240 (800)
T ss_dssp CCCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-CCCCTTH-----HHHHHHHHHHBCCBBCSSSSC-
T ss_pred CCCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-ccccHHH-----HHHHHHHHHhccccccccCee-
Confidence 4456666888999999999999999999999997 221100 00 0000000 00000000112221 111111
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHH
Q 002304 305 GTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLG 384 (939)
Q Consensus 305 gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~ 384 (939)
=.-||..||.+||.+....++ .+++..|+..+....|+||..+.-+|.-+.. -+..-+..+++++.
T Consensus 241 ----------VAPVRETaAQtLGaL~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D--LL~~Ld~Vv~aVL~ 306 (800)
T 3oc3_A 241 ----------VAPVRDAAAYLLSRIYPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE--FVEDKDGLCRKLVS 306 (800)
T ss_dssp ----------BCHHHHHHHHHHHHHTTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG--GCCCHHHHHHHHHH
T ss_pred ----------eeehHHHHHHHHHHHHhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 236999999999998433333 3456666666689999999999999998842 12113678899999
Q ss_pred hcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccc----hHHHHHHHHHh
Q 002304 385 TLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD----EADVFSVLFFI 440 (939)
Q Consensus 385 ~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peD----r~~I~~aL~~L 440 (939)
.|.|.+.|||..|+.+|--+.. ...+..++..+-++|.++ +| -.+|...|..|
T Consensus 307 GL~D~DDDVRAVAAetLiPIA~--p~~l~~LL~iLWd~L~~L-DDLSASTgSVMdLLAkL 363 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFPI--TDSLDLVLEKCWKNIESE-ELISVSKTSNLSLLTKI 363 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSCC--SSTHHHHHHHHHHHHHTC-CSCCTTHHHHHHHHHHH
T ss_pred hcCCcccHHHHHHHHHhhhhcc--hhhHHHHHHHHHHHhhhh-cccchhhHHHHHHHHHH
Confidence 9999999999999998887763 234555556555555554 33 33444444443
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.28 E-value=0.0048 Score=66.28 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=122.7
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHH
Q 002304 192 CRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLL 271 (939)
Q Consensus 192 ~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~Ll 271 (939)
+.+...|-..|..-|.+|++.|-..-... ...-+..+|-.|.-+.-.+.|.+..|=..+.+.|..+=
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~-----~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~-------- 115 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS-----PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIV-------- 115 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC-----HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC-----hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--------
Confidence 34666777788999999999998743211 00011111222333333556999999888888776641
Q ss_pred HHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC
Q 002304 272 QTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD 351 (939)
Q Consensus 272 qtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe 351 (939)
..+++.. +.+... -....+|+++..|.|....||..+-+.|-.+..-.| +.+.++.+.+.+...
T Consensus 116 --------~~l~~~~--y~~~~~----ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--~~~v~~~l~~g~ksK 179 (266)
T 2of3_A 116 --------ELIRDTE--TPMSQE----EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--PLKMTPMLLDALKSK 179 (266)
T ss_dssp --------HHHHHTT--CCCCHH----HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHGGGCS
T ss_pred --------HHHHhcc--ccchHH----HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHccC
Confidence 1111100 000000 024468999999999999999999988866543111 256889999999999
Q ss_pred CHHHHHHHHHHHhhhhhcccccchhhHH---HHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 352 SVTVRLQALETMHIMVTCEHLNLEDKHM---HMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 352 ~~~VRl~Aa~ALgkI~~~~~i~l~E~aL---~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
+|-+|..++..++.+-+..-.. ....+ +.+..+|+|.|..||.+|...+..
T Consensus 180 N~R~R~e~l~~l~~li~~~G~~-~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 180 NARQRSECLLVIEYYITNAGIS-PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSG-GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCC-ccccccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999886522222 35688 999999999999999999776554
No 91
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.25 E-value=0.0069 Score=73.88 Aligned_cols=211 Identities=12% Similarity=0.022 Sum_probs=122.8
Q ss_pred cCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHH
Q 002304 158 KDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVF 237 (939)
Q Consensus 158 ~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf 237 (939)
++++...|.+|+.+++.+.+............+++.+. .+.++++.||..|+.++|.+....... ......++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~------~~~l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADH------PVMINSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHC------HHHHTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhC------HHHHHHHH
Confidence 67899999999999999986532111122233344222 345678999999999999998754321 12234577
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC--CCc
Q 002304 238 IQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE--DEF 315 (939)
Q Consensus 238 ~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le--DE~ 315 (939)
..|...++| +.||..|+.+|.++.....+.+.+.+ ......+...+. +-.
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--------------------------~~il~~l~~~l~~~~~~ 583 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--------------------------ANIVAVSQDVLMKQIHK 583 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--------------------------HHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--------------------------HHHHHHHHHHhccCCCC
Confidence 888899977 89999999999998421111111100 111222222332 335
Q ss_pred HHHHHHHHHHHHhccccch--h---hHHHHHHHHHHHhc-----CCCHHHHHH---HHHHHhhhhhc-c-----------
Q 002304 316 YEVRKSACSSLGSLVILSE--K---FAGEALNLLVDMLN-----DDSVTVRLQ---ALETMHIMVTC-E----------- 370 (939)
Q Consensus 316 ~eVR~aAaeALGkL~~~s~--~---fA~~ALd~LvdmLn-----De~~~VRl~---Aa~ALgkI~~~-~----------- 370 (939)
..+|..+.+++|.+....+ . +....++++...++ +.++..|.. +++.|+.++.. +
T Consensus 584 ~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~ 663 (963)
T 2x19_B 584 TSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGP 663 (963)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC------
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 6889999999988764322 1 23455666666553 235666554 44444444320 0
Q ss_pred -------------cccchhhHHHHHHHhcC--CCCHHHHHHHHHHHhh
Q 002304 371 -------------HLNLEDKHMHMFLGTLV--DNSELVRCAARKILKL 403 (939)
Q Consensus 371 -------------~i~l~E~aL~~LL~~L~--D~~~dVR~aA~~aLg~ 403 (939)
...+-+..++.+..+|+ -.+++|++.+..+++.
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~ 711 (963)
T 2x19_B 664 ELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEK 711 (963)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 01122345555555554 2356777777776665
No 92
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.21 E-value=0.012 Score=73.86 Aligned_cols=242 Identities=14% Similarity=0.072 Sum_probs=151.8
Q ss_pred ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhc
Q 002304 145 RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACI 224 (939)
Q Consensus 145 ~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~ 224 (939)
..++|..++..+-. .+.+|+.=++||...|.... +..+.+.+..++-.. .+|+.+|........+
T Consensus 324 ~~e~L~~l~~~~~~--~~~~r~~~lDal~~aGT~~a----------~~~i~~~i~~~~l~~-~ea~~~l~~~~~~~~P-- 388 (1056)
T 1lsh_A 324 DAGVLQSIWHKLHQ--QKDYRRWILDAVPAMATSEA----------LLFLKRTLASEQLTS-AEATQIVASTLSNQQA-- 388 (1056)
T ss_dssp CHHHHHHHHHHHTT--SHHHHHHHHHHHHHHCSHHH----------HHHHHHHHHTTCSCH-HHHHHHHHHHHHTCCC--
T ss_pred CHHHHHHHHHHHhc--cHHHHHHHHHHhHhcCCHHH----------HHHHHHHHHcCCCCH-HHHHHHHHHhhccCCC--
Confidence 36677666665443 47789998999987775543 455666676554443 2366766643332111
Q ss_pred ccccccccchhHHHHHHHhhcC----CCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhh
Q 002304 225 DEKNRIDCSDVVFIQLCSMIRD----MRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISA 300 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~D----~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~ 300 (939)
..+.+..+-.++++ .++.+|..|.-++|.+-. +.-. .. +....+.+
T Consensus 389 --------t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~------------k~c~---~~---~~c~~~~v---- 438 (1056)
T 1lsh_A 389 --------TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVF------------RYCA---NT---VSCPDELL---- 438 (1056)
T ss_dssp --------CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHH------------HHHT---TC---SSCCGGGT----
T ss_pred --------CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHH------------HHhc---cC---CCCCHHHH----
Confidence 13344455555544 578899999999998721 0000 00 00000000
Q ss_pred hcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHhhhhhccccc
Q 002304 301 SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND-------DSVTVRLQALETMHIMVTCEHLN 373 (939)
Q Consensus 301 s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnD-------e~~~VRl~Aa~ALgkI~~~~~i~ 373 (939)
......|..+++..+.+-+..++.+||++|.. .+++.|...+.. ....||.+|+.||.+++...
T Consensus 439 ~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--- 509 (1056)
T 1lsh_A 439 QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--- 509 (1056)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc---
Confidence 11222345556666788999999999999963 367777777642 24679999999999998421
Q ss_pred chhhHHHHHHHhc--CCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhccc
Q 002304 374 LEDKHMHMFLGTL--VDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSH 444 (939)
Q Consensus 374 l~E~aL~~LL~~L--~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H 444 (939)
.+..-+.++... .+++++||-+|..+|=.++ |+...++.+...+.. +...+++..+|..|+.+.++.
T Consensus 510 -p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~~l~~ia~~l~~--E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 510 -PRKVQEIVLPIFLNVAIKSELRIRSCIVFFESK-PSVALVSMVAVRLRR--EPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp -HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTCC
T ss_pred -hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHHhcC
Confidence 234557788888 7899999988888774433 666565555444443 344567888999999998764
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.13 E-value=0.025 Score=69.23 Aligned_cols=287 Identities=9% Similarity=0.049 Sum_probs=142.6
Q ss_pred HHHHHHhhh-cCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 149 LFTVCLGLT-KDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 149 L~~~L~~ll-~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
++..+..+. +|++|.||.+|+.+++++.+.-. ........+++.+.+.| | +.|+..|+.++..+......
T Consensus 506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~-~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~----- 576 (971)
T 2x1g_F 506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLM-ENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL----- 576 (971)
T ss_dssp HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH-----
T ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH-----
Confidence 444444444 37899999999999999875321 11234556788888888 4 89999999999988753210
Q ss_pred cccccchhHHHHHHHhhcC--CCHHHHHHHHHHHhcc-cCCcHHHHHHHhh---HHHhhhhhhhhhccccch-hhhhhhh
Q 002304 228 NRIDCSDVVFIQLCSMIRD--MRMEVRVEAFNALGKV-GMISEIVLLQTLS---KKVLGATKEKKFHSLGAA-ECFEISA 300 (939)
Q Consensus 228 ~~i~lvddaf~aLc~aL~D--~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~---kklm~~lk~kr~~~~l~~-d~~~l~~ 300 (939)
.-.+..+..+..+..+++. .+..+|..+.+++|.+ ..++++...+.+. ..++..+...-....... +....++
T Consensus 577 ~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~ 656 (971)
T 2x1g_F 577 QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIF 656 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 0112335566677777776 5689999999999998 3333122122111 112211111000000000 0000000
Q ss_pred -hcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcC--CCHHHHHHHHHHHhhhhhc-c--cccc
Q 002304 301 -SAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLND--DSVTVRLQALETMHIMVTC-E--HLNL 374 (939)
Q Consensus 301 -s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnD--e~~~VRl~Aa~ALgkI~~~-~--~i~l 374 (939)
-+.++.++.++.+....-+... - ....-..+....++.+..++++ .+..|...+..+++.+... + -...
T Consensus 657 ~l~~L~~~~~~l~~~~~~~~~~~---~--~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~ 731 (971)
T 2x1g_F 657 RLNMISTLFSSLNTDVDEQATDQ---P--IVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPM 731 (971)
T ss_dssp HHHHHHHHHHHHTC------------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTH
T ss_pred HHHHHHHHHhhcCCCcCcccccc---c--CCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 0011222222221100000000 0 0000112345567777777654 3678888899999886531 1 1112
Q ss_pred hhhHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC--chhHHHHHHHH----HHH--------hhccCccchHHHHHHHHH
Q 002304 375 EDKHMHMFLGTLVD-NSELVRCAARKILKLVKTP--KLEFFRLFIDG----LLE--------NLKIYPQDEADVFSVLFF 439 (939)
Q Consensus 375 ~E~aL~~LL~~L~D-~~~dVR~aA~~aLg~i~l~--~~~~l~~~l~~----LL~--------~L~~~peDr~~I~~aL~~ 439 (939)
-+..++.++..++. +.+.+=..+..++...+.. ....+...+.. .+. ..+.+|+.+++-+..+.+
T Consensus 732 l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~ 811 (971)
T 2x1g_F 732 LQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQ 811 (971)
T ss_dssp HHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHH
Confidence 23445555555543 2233333333444444432 11122233332 222 234466667888888888
Q ss_pred hhcccccchH
Q 002304 440 IGRSHGNFAA 449 (939)
Q Consensus 440 LG~~H~~lv~ 449 (939)
+.+++|..+.
T Consensus 812 ~l~~~p~~~~ 821 (971)
T 2x1g_F 812 IIKKIPQVLE 821 (971)
T ss_dssp HHHSSGGGGG
T ss_pred HHHhCcHHHc
Confidence 8888876654
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.04 E-value=0.01 Score=73.87 Aligned_cols=209 Identities=10% Similarity=0.131 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHH
Q 002304 162 PYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLC 241 (939)
Q Consensus 162 p~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc 241 (939)
+.-|+.|+.++..+...... ...+...+...+.+++.|..+. ..|+.+++.+........ ..+..++ ..+..+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~--~~e~~~~-~~~~~~~ 101 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNII-EHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP--SVEPYIV-QLVPAIC 101 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCS-SSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT--TTHHHHH-TTHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccc-ccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC--CcccchH-HHHHHHH
Confidence 45567788888776543211 1122235678888999988666 888888888875431110 0112222 2467888
Q ss_pred HhhcCCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCC-cHHHH
Q 002304 242 SMIRDMRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDE-FYEVR 319 (939)
Q Consensus 242 ~aL~D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE-~~eVR 319 (939)
.+..|....||.+|..+...+ +.++++.+ ..+.+++++.|... .|+.+
T Consensus 102 ~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~------------------------------~~~~~~~~~~~~~~~kw~~k 151 (986)
T 2iw3_A 102 TNAGNKDKEIQSVASETLISIVNAVNPVAI------------------------------KALLPHLTNAIVETNKWQEK 151 (986)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHSCGGGH------------------------------HHHHHHHHHHHHHCCCHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHhCCHHHH------------------------------HHHHHHHHHHhccccchHHH
Confidence 999999999999999888776 43443332 23456777888655 69999
Q ss_pred HHHHHHHHhccccchhh-H---HHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cccccchhhHHHHHHHhcCCCCHHHH
Q 002304 320 KSACSSLGSLVILSEKF-A---GEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEHLNLEDKHMHMFLGTLVDNSELVR 394 (939)
Q Consensus 320 ~aAaeALGkL~~~s~~f-A---~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~i~l~E~aL~~LL~~L~D~~~dVR 394 (939)
.+|...++++....|+. + .+.+|.+-+++.|--++|..+|..+|.++.. .++..+ +..+|.|+.++.++ .+|-
T Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p-~~~~ 229 (986)
T 2iw3_A 152 IAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADP-TEVP 229 (986)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCT-THHH
T ss_pred HHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcCh-hhhH
Confidence 99999999999655553 2 5678999999999999999999999999874 222222 46799999999999 5688
Q ss_pred HHHHHHHhhccCCc
Q 002304 395 CAARKILKLVKTPK 408 (939)
Q Consensus 395 ~aA~~aLg~i~l~~ 408 (939)
+.++.+....-+..
T Consensus 230 ~~~~~l~~~tfv~~ 243 (986)
T 2iw3_A 230 ETVHLLGATTFVAE 243 (986)
T ss_dssp HHHHHHTTCCCCSC
T ss_pred HHHHHhhcCeeEee
Confidence 88777665544443
No 95
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.99 E-value=0.0043 Score=66.65 Aligned_cols=176 Identities=9% Similarity=0.004 Sum_probs=120.9
Q ss_pred HhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccc
Q 002304 154 LGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCS 233 (939)
Q Consensus 154 ~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lv 233 (939)
...+-+.|..-|-+|++.|.+........-.....-+++++.-.+.|.+..|=..+.+.|..+-..+... ..++.
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~-----~y~~~ 126 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT-----ETPMS 126 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT-----TCCCC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc-----cccch
Confidence 3445556888888999888776442210000111123555555667999999999999988765433211 11222
Q ss_pred ----hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCC-cHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHh
Q 002304 234 ----DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMI-SEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFV 308 (939)
Q Consensus 234 ----ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~v-s~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI 308 (939)
...+..|...+.|....||..+-..|..+..+ ++ +...+.+.
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---------------------------------~~v~~~l~ 173 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---------------------------------LKMTPMLL 173 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---------------------------------HHHHHHHH
Confidence 34567899999999999999999988776432 22 22445677
Q ss_pred hccCCCcHHHHHHHHHHHHhccccchhhHHHHH---HHHHHHhcCCCHHHHHHHHHHHhhhh
Q 002304 309 HGFEDEFYEVRKSACSSLGSLVILSEKFAGEAL---NLLVDMLNDDSVTVRLQALETMHIMV 367 (939)
Q Consensus 309 ~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~AL---d~LvdmLnDe~~~VRl~Aa~ALgkI~ 367 (939)
.++...+|-+|.+.+.-++.+-....--..+++ +.+..+++|.+..||-+|+.++..+=
T Consensus 174 ~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 174 DALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 788999999999999998776532110024578 99999999999999999999998653
No 96
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.96 E-value=0.052 Score=68.24 Aligned_cols=219 Identities=13% Similarity=0.044 Sum_probs=137.4
Q ss_pred HHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCC----CCchH
Q 002304 130 SVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRD----HEDCV 205 (939)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~D----dd~~V 205 (939)
..|-||+.---. ++-..-+..+.+++...+-..-. |+.+|.....-.. + ..+....+..++++ .++.+
T Consensus 340 ~~r~~~lDal~~--aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~-P----t~e~l~~~~~l~~~~~~~~~~~l 411 (1056)
T 1lsh_A 340 DYRRWILDAVPA--MATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQ-A----TRESLSYARELLNTSFIRNRPIL 411 (1056)
T ss_dssp HHHHHHHHHHHH--HCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCC-C----CHHHHHHHHHHHTCHHHHTCHHH
T ss_pred HHHHHHHHHhHh--cCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCC-C----CHHHHHHHHHHHhCcccccCHHH
Confidence 467787655221 44445556666666654432222 4444443222111 1 12345666777765 46889
Q ss_pred HHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhh
Q 002304 206 RCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEK 285 (939)
Q Consensus 206 R~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~k 285 (939)
|..|+-++|.+...+-..+. .-....+......+..+++..+..-+..+-++||++|...
T Consensus 412 ~~ta~La~gslV~k~c~~~~-~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~------------------- 471 (1056)
T 1lsh_A 412 RKTAVLGYGSLVFRYCANTV-SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN------------------- 471 (1056)
T ss_dssp HHHHHHHHHHHHHHHHTTCS-SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG-------------------
T ss_pred HHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChh-------------------
Confidence 99999999988764311100 0011234566777888888888999999999999998521
Q ss_pred hhccccchhhhhhhhhcchHHHhhcc-------CCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh--cCCCHHHH
Q 002304 286 KFHSLGAAECFEISASAAAGTFVHGF-------EDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDML--NDDSVTVR 356 (939)
Q Consensus 286 r~~~~l~~d~~~l~~s~a~gaLI~~L-------eDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmL--nDe~~~VR 356 (939)
.++.|...+ .+....||.+|+.||.++....| ..+-+.|...+ .++..+||
T Consensus 472 -----------------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---~~v~~il~~i~~n~~e~~EvR 531 (1056)
T 1lsh_A 472 -----------------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---RKVQEIVLPIFLNVAIKSELR 531 (1056)
T ss_dssp -----------------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---HHHHHHHHHHHHCTTSCHHHH
T ss_pred -----------------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---HHHHHHHHHHhcCCCCChHHH
Confidence 122222222 23356899999999999987554 35667888888 67899999
Q ss_pred HHHHHHHhhhhhcccccchhhHHHHHHHhcC-CCCHHHHHHHHHHHh
Q 002304 357 LQALETMHIMVTCEHLNLEDKHMHMFLGTLV-DNSELVRCAARKILK 402 (939)
Q Consensus 357 l~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~-D~~~dVR~aA~~aLg 402 (939)
..|...|.+-.+. ...+..+...|. |++..|+.-+...+.
T Consensus 532 iaA~~~Lm~t~P~------~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 572 (1056)
T 1lsh_A 532 IRSCIVFFESKPS------VALVSMVAVRLRREPNLQVASFVYSQMR 572 (1056)
T ss_dssp HHHHHHHHHTCCC------HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcC------HHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 9999999875431 235556666555 588888865544333
No 97
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.73 E-value=0.05 Score=67.67 Aligned_cols=132 Identities=11% Similarity=0.089 Sum_probs=88.2
Q ss_pred CCcHHHHHHHHHHHHhccccch-----hhHHHHHHHHHHHh-----cCCCHHHHHHHHHHHhhhhhc--ccccchhhHHH
Q 002304 313 DEFYEVRKSACSSLGSLVILSE-----KFAGEALNLLVDML-----NDDSVTVRLQALETMHIMVTC--EHLNLEDKHMH 380 (939)
Q Consensus 313 DE~~eVR~aAaeALGkL~~~s~-----~fA~~ALd~LvdmL-----nDe~~~VRl~Aa~ALgkI~~~--~~i~l~E~aL~ 380 (939)
..+|..|.+|+.++|.++.... .+....++.|..+. +|+...||..+..++|+.+.- .+-..-...++
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4689999999999999865311 22334445555433 256667777899999988741 11123356778
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhccCCch------------hHHHHHHHHHHHhhccCcc-chHHHHHHHHHhhccc
Q 002304 381 MFLGTLVDNSELVRCAARKILKLVKTPKL------------EFFRLFIDGLLENLKIYPQ-DEADVFSVLFFIGRSH 444 (939)
Q Consensus 381 ~LL~~L~D~~~dVR~aA~~aLg~i~l~~~------------~~l~~~l~~LL~~L~~~pe-Dr~~I~~aL~~LG~~H 444 (939)
.++..|.|+++.||.+|..++..+--... .-++.+++.+...+.+++. +...+++|++.+....
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 88889999999999999999876532111 1245566666666666653 4667788888885443
No 98
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.50 E-value=0.0029 Score=75.60 Aligned_cols=210 Identities=12% Similarity=0.064 Sum_probs=107.4
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHH-HHHHhhCCCCchHHHHHHHHHHHhcchhhhhcc
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCC-RAVELLRDHEDCVRCAAVRVVSEWGKMLIACID 225 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~-~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~ 225 (939)
+.+.+ +++.++++|+.+|..|+.||..+.........-+.+.... .+..+|.|++..||.+|+.+|+.+...-.....
T Consensus 34 ~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 34444 4556899999999999999999986422111112223444 456689999999999999999987642100000
Q ss_pred cccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhh-hhhhhcch
Q 002304 226 EKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECF-EISASAAA 304 (939)
Q Consensus 226 ~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~-~l~~s~a~ 304 (939)
.--+..+++.+|..+++-....+.... ..+.++.......+... ...++..+.. ....+.+.+ .+...+.+
T Consensus 113 ---~~l~~~~il~~L~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~lL~~---L~e~s~~~~~~v~~~~~l 184 (684)
T 4gmo_A 113 ---VHLYRLDVLTAIEHAAKAVLETLTTSE-PPFSKLLKAQQRLVWDI-TGSLLVLIGL---LALARDEIHEAVATKQTI 184 (684)
T ss_dssp ---HHHHHTTHHHHHHHHHHHHHHHHHCBT-TBGGGSCHHHHHHHHHH-HHHHHHHHHH---HHHHCHHHHHHHHTCHHH
T ss_pred ---HHHHHcChHHHHHHHHHhhHHHHhhhc-cccccccHHHHHHHHHH-HHHHHHHHHH---HHhCCHHHHHHHHhcccH
Confidence 000124567777777653222221100 00000000001111000 0001110000 000001111 12234566
Q ss_pred HHHhhccCC---CcHHHHHHHHHHHHhccccchhhHHH--------HHHHHHHHhcCCCHHHHHHHHHHHhhh
Q 002304 305 GTFVHGFED---EFYEVRKSACSSLGSLVILSEKFAGE--------ALNLLVDMLNDDSVTVRLQALETMHIM 366 (939)
Q Consensus 305 gaLI~~LeD---E~~eVR~aAaeALGkL~~~s~~fA~~--------ALd~LvdmLnDe~~~VRl~Aa~ALgkI 366 (939)
+.|+..|.+ ...+|+.+|+..|..+...++++... .+..|..+.++.+. .|..++..|.++
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni 256 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNV 256 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhH
Confidence 777777633 23689999999999998877766543 23445554455444 355555666555
No 99
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.39 E-value=0.47 Score=54.82 Aligned_cols=212 Identities=12% Similarity=0.099 Sum_probs=133.9
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC
Q 002304 234 DVVFIQLCSMIRDMRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE 312 (939)
Q Consensus 234 ddaf~aLc~aL~D~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le 312 (939)
.+.+..|..+.+- +..+.+-||.-++++ +..+. +...|+.+++...|
T Consensus 28 ~~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~-------------------------------l~~~Ai~a~lDLcE 75 (507)
T 3u0r_A 28 KDAYQVILDGVKG-GTKEKRLAAQFIPKFFKHFPE-------------------------------LADSAINAQLDLCE 75 (507)
T ss_dssp HHHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGG-------------------------------GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChh-------------------------------hHHHHHHHHHHHHh
Confidence 4456667766654 588888888888876 43331 24567889999999
Q ss_pred CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHH
Q 002304 313 DEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSEL 392 (939)
Q Consensus 313 DE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~d 392 (939)
|++..||+.|+..|..+... ++..+..|.|+.+|+-++...+...-++|..+-..+ ....+..+...+...+..
T Consensus 76 Ded~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D----pk~tl~~lf~~i~~~~e~ 149 (507)
T 3u0r_A 76 DEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMD----AKGTLGGLFSQILQGEDI 149 (507)
T ss_dssp CSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHSCHH
T ss_pred cccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcC----hHHHHHHHHHHHcccchH
Confidence 99999999999999998864 778899999999999999877766666665554211 012334444444446788
Q ss_pred HHHHHHHHHhhc------cCCchhHHHHHHHHHHHhhccCccc-hHHHHHHHHHhh--cccccchHHHHHHHhhhcCCCC
Q 002304 393 VRCAARKILKLV------KTPKLEFFRLFIDGLLENLKIYPQD-EADVFSVLFFIG--RSHGNFAACIIKEVCQEIEPDS 463 (939)
Q Consensus 393 VR~aA~~aLg~i------~l~~~~~l~~~l~~LL~~L~~~peD-r~~I~~aL~~LG--~~H~~lv~~lv~~Ll~~i~p~~ 463 (939)
||..+-.-|..- .+-+.+.=..++....+.|.+...+ -......|+.+. +. +.....+++=+.+.. -+
T Consensus 150 ~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t-~~g~qeLv~ii~eQa--~L 226 (507)
T 3u0r_A 150 VRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQT-VSGRQQLVELVAEQA--DL 226 (507)
T ss_dssp HHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSS-HHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccC-chHHHHHHHHHHHHH--hc
Confidence 998776666221 1123333333444555566544433 234556665553 22 223333444444432 12
Q ss_pred CCCCCCCchhHHHHHHHHhhccc
Q 002304 464 DDKLGFDNARVAAFLVLAISVPL 486 (939)
Q Consensus 464 ~~e~~~dd~~yiA~Lili~~A~~ 486 (939)
+...+..|+.++.++|--+..|.
T Consensus 227 ~~~f~~sD~e~vdRlI~C~~~AL 249 (507)
T 3u0r_A 227 EQTFNPSDPDCVDRLLQCTRQAV 249 (507)
T ss_dssp TSCCCSSCHHHHHHHHHHHHHHG
T ss_pred cCCCCCcCHHHHHHHHHHHHHHH
Confidence 23344469999999998888776
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.37 E-value=0.12 Score=64.42 Aligned_cols=277 Identities=12% Similarity=-0.019 Sum_probs=148.5
Q ss_pred CCCHHHHHHHHHHHHhhhhcccc------cchhhhhhHHHHHHHhhC-----CCCchHHHHHHHHHHHhcchhhhhcccc
Q 002304 159 DPYPYVREAALNGLVCLLKHVVF------EDVDLIQGCCCRAVELLR-----DHEDCVRCAAVRVVSEWGKMLIACIDEK 227 (939)
Q Consensus 159 D~Dp~VRraAl~AL~~L~~~~~~------~~~~l~~~i~~~l~~lL~-----Ddd~~VR~aAV~aLg~lg~~~~~~~~~~ 227 (939)
+.+-..+.+|+-+|+.+++.-.. ......+.+.+.+..+++ |+.+.||..+.+.+|.+...+..
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~----- 528 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY----- 528 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----
Confidence 45678899999999998874110 000122345666777765 99999999999999999986532
Q ss_pred cccccchhHHHHHHH--hhcCCCHHHHHHHHHHHhcccC-----Cc--HHHHHHHhhHHHhhhhhhhhhccc------c-
Q 002304 228 NRIDCSDVVFIQLCS--MIRDMRMEVRVEAFNALGKVGM-----IS--EIVLLQTLSKKVLGATKEKKFHSL------G- 291 (939)
Q Consensus 228 ~~i~lvddaf~aLc~--aL~D~s~~VR~~AA~ALG~i~~-----vs--~~~LlqtL~kklm~~lk~kr~~~~------l- 291 (939)
.......++..+.. .+.|++.+||.+|+.+|.++.. .. .+.+++.+.. .+..+....+ .
T Consensus 529 -~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~----lL~~~~~~~~~~~~~~~~ 603 (980)
T 3ibv_A 529 -ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD----LLNISVSPVTDMDAPVPT 603 (980)
T ss_dssp -CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG----GGCCCCCCCCC--CSSCC
T ss_pred -CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH----hhcCcCCCCCcccccccc
Confidence 12345678888888 9999999999999999999832 11 1112222211 1110000000 0
Q ss_pred ----chh-----hhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC-CHHHHH-HHH
Q 002304 292 ----AAE-----CFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDD-SVTVRL-QAL 360 (939)
Q Consensus 292 ----~~d-----~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe-~~~VRl-~Aa 360 (939)
..+ +..+ =+++|.++..+..+ .+-+...++.|..=- + .-+..++...... +..++. +.+
T Consensus 604 ~~~~~~~~~~~~ql~L--~eaig~li~~~~~~-~e~~~~~l~~ll~pl-----~--~~l~~~l~~~~~~~~~~~~i~~~i 673 (980)
T 3ibv_A 604 LNSSIRNSDFNSQLYL--FETVGVLISSGNLT-PEEQALYCDSLINAL-----I--GKANAALSSDLSALENIISVYCSL 673 (980)
T ss_dssp HHHHHHTTTHHHHHHH--HHHHHHHHHHSCCC-HHHHHHHHHHHHHHH-----H--HHHHHHHTTSCC--CHHHHHHHHH
T ss_pred hhhhcccCCchHHHHH--HHHHHHHHhCCCCC-HHHHHHHHHHHHHHH-----H--HHHHHHHhhcccCccHHHHHHHHH
Confidence 000 1111 23677777776643 233444444443210 0 1112222111111 333333 467
Q ss_pred HHHhhhhhcc---------cccchhhHHHHHHHhcC--CCCHHHHHHHHHHHhhccCCc----hhHHHHHHHHHHHhhcc
Q 002304 361 ETMHIMVTCE---------HLNLEDKHMHMFLGTLV--DNSELVRCAARKILKLVKTPK----LEFFRLFIDGLLENLKI 425 (939)
Q Consensus 361 ~ALgkI~~~~---------~i~l~E~aL~~LL~~L~--D~~~dVR~aA~~aLg~i~l~~----~~~l~~~l~~LL~~L~~ 425 (939)
.|+|.++..- ....=.+.++.++.+|+ ..+..||.+++.++..+-..= ...+..+++.++...+
T Consensus 674 ~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~- 752 (980)
T 3ibv_A 674 MAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSID- 752 (980)
T ss_dssp HHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCC-
T ss_pred HHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCC-
Confidence 7777777310 01111256677777777 577888888888776642211 1223334444443222
Q ss_pred CccchHHHHHHHHHhhcccccchHHHHHHHhh
Q 002304 426 YPQDEADVFSVLFFIGRSHGNFAACIIKEVCQ 457 (939)
Q Consensus 426 ~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~ 457 (939)
+..-....+.+++|-.+-.+-+-+++..++.
T Consensus 753 -~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~ 783 (980)
T 3ibv_A 753 -MNELVDVLSFISQLIHIYKDNMMEITNRMLP 783 (980)
T ss_dssp -TTTHHHHHHHHHHHHHHTTTTSHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334556677777754433334445555544
No 101
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.33 E-value=0.063 Score=67.36 Aligned_cols=155 Identities=13% Similarity=0.059 Sum_probs=106.0
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccC--
Q 002304 238 IQLCSMIRD--MRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFE-- 312 (939)
Q Consensus 238 ~aLc~aL~D--~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~Le-- 312 (939)
..+...+.+ .+|+.|.+|..++|.| +...++.....+ +.+++.|+..++
T Consensus 454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l--------------------------~~vi~~Ll~l~~~~ 507 (1023)
T 4hat_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV--------------------------VTVIKDLLDLCVKK 507 (1023)
T ss_dssp HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH--------------------------HHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH--------------------------HHHHHHHHHhhhcc
Confidence 344444543 7899999999999998 555544321111 223445555555
Q ss_pred ---CCcHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhc-c-cc---------cch
Q 002304 313 ---DEFYEVRKSACSSLGSLVI---LSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC-E-HL---------NLE 375 (939)
Q Consensus 313 ---DE~~eVR~aAaeALGkL~~---~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~-~-~i---------~l~ 375 (939)
|+...||..++..+|+... ..+++-...+..|...+.|+.+.|...|+.|+.+|+.. + .+ ..-
T Consensus 508 ~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~ 587 (1023)
T 4hat_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1023)
T ss_dssp CSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH
Confidence 5667788899999999764 35667788999999999999999999999999999862 1 11 122
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHhhc--cCCchhHHHHHHHH
Q 002304 376 DKHMHMFLGTLVDNSELVRCAARKILKLV--KTPKLEFFRLFIDG 418 (939)
Q Consensus 376 E~aL~~LL~~L~D~~~dVR~aA~~aLg~i--~l~~~~~l~~~l~~ 418 (939)
++.+..+...+.+-.+.-+..+.++++.+ ..++......+++.
T Consensus 588 ~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~ 632 (1023)
T 4hat_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSD 632 (1023)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 44555666666777888888888888875 34444433333433
No 102
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.23 E-value=0.32 Score=60.47 Aligned_cols=222 Identities=12% Similarity=0.046 Sum_probs=129.0
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHhhhh----c-ccc-cchhhhhhHHHHHHHhhC---C------C----------Cc
Q 002304 149 LFTVCLGLTKDPYPYVREAALNGLVCLLK----H-VVF-EDVDLIQGCCCRAVELLR---D------H----------ED 203 (939)
Q Consensus 149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~----~-~~~-~~~~l~~~i~~~l~~lL~---D------d----------d~ 203 (939)
++..+.....++|..|+..|++-+..+.+ . ... ........+.+.++..+. | + |.
T Consensus 345 ~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~ 424 (1049)
T 3m1i_C 345 AHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKES 424 (1049)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccc
Confidence 45566666778899999999987766654 1 110 011122223333333321 0 1 00
Q ss_pred ---hHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhc--CCCHHHHHHHHHHHhcccC-CcHHHHHHHhhHH
Q 002304 204 ---CVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIR--DMRMEVRVEAFNALGKVGM-ISEIVLLQTLSKK 277 (939)
Q Consensus 204 ---~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~--D~s~~VR~~AA~ALG~i~~-vs~~~LlqtL~kk 277 (939)
..|..+.+.|..+..... .....-++..|-+.++ ..+|+.|.+|..++|.+.. ..... ...+
T Consensus 425 d~~~~~~~~~~~L~~l~~~~~--------~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~-e~~~--- 492 (1049)
T 3m1i_C 425 DTIQLYKSEREVLVYLTHLNV--------IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDT-EKRF--- 492 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHH-HHHH---
T ss_pred hHHHHHHHHHHHHHHHHccCH--------HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchh-hHHH---
Confidence 456666667666553210 0111223344455554 5899999999999999843 32221 0000
Q ss_pred HhhhhhhhhhccccchhhhhhhhhcchHHHhhcc-----CCCcHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHhc
Q 002304 278 VLGATKEKKFHSLGAAECFEISASAAAGTFVHGF-----EDEFYEVRKSACSSLGSLVI---LSEKFAGEALNLLVDMLN 349 (939)
Q Consensus 278 lm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~L-----eDE~~eVR~aAaeALGkL~~---~s~~fA~~ALd~LvdmLn 349 (939)
+ ....+.|+... .|+..-||..++..+|+... ..+++...+++.|+..+.
T Consensus 493 -l---------------------~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~ 550 (1049)
T 3m1i_C 493 -V---------------------VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMH 550 (1049)
T ss_dssp -H---------------------HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred -H---------------------HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 0 11222233322 24666777789999997663 256677889999999999
Q ss_pred CCCHHHHHHHHHHHhhhhhcccc-----------cchhhHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 002304 350 DDSVTVRLQALETMHIMVTCEHL-----------NLEDKHMHMFLGTLVDNSELVRCAARKILKLV 404 (939)
Q Consensus 350 De~~~VRl~Aa~ALgkI~~~~~i-----------~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i 404 (939)
|+++.||..|+.|+.++...-.- ..-+..+..+..++.+-..+-+..+.++++.+
T Consensus 551 ~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~i 616 (1049)
T 3m1i_C 551 ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999852111 11244555555666665555555565665554
No 103
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.04 E-value=0.17 Score=63.15 Aligned_cols=291 Identities=12% Similarity=0.028 Sum_probs=160.1
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchh--hhhhH-HHHHHHhhC--CCCchHHHHHHHHHHHhcchhh
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVD--LIQGC-CCRAVELLR--DHEDCVRCAAVRVVSEWGKMLI 221 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~--l~~~i-~~~l~~lL~--Ddd~~VR~aAV~aLg~lg~~~~ 221 (939)
+.++..+..++.+ +.+|.+|++.|..+..++...+.+ +...+ +......+. ++|.+++..-++.+-.+|....
T Consensus 232 ~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~ 309 (980)
T 3ibv_A 232 EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELV 309 (980)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4677778888876 899999999999998876522111 00000 011122222 6777887777777766665542
Q ss_pred hhccccc----------ccccchhHHHHHHHhhcCCCHHHHHHHHHHHhccc-------C---CcH---HHHHHHhhHHH
Q 002304 222 ACIDEKN----------RIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVG-------M---ISE---IVLLQTLSKKV 278 (939)
Q Consensus 222 ~~~~~~~----------~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~-------~---vs~---~~LlqtL~kkl 278 (939)
.. +... -.......+..+...+.+++..|-..+..-+..+- . ..+ +++.+.+ ..+
T Consensus 310 ~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll-~~l 387 (980)
T 3ibv_A 310 AI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLL-EAI 387 (980)
T ss_dssp HH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHH-HHH
T ss_pred HH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHH-HHH
Confidence 22 1110 00122345566777888899999887766554421 0 111 2222222 112
Q ss_pred hhhhhhhhhccccc----h--hh--------------hhhhhhcc--------hHH-Hhhcc---CCCcHHHHHHHHHHH
Q 002304 279 LGATKEKKFHSLGA----A--EC--------------FEISASAA--------AGT-FVHGF---EDEFYEVRKSACSSL 326 (939)
Q Consensus 279 m~~lk~kr~~~~l~----~--d~--------------~~l~~s~a--------~ga-LI~~L---eDE~~eVR~aAaeAL 326 (939)
..+++--....--. . +. +..+++.. +.. +-..+ ....|..+.+|+.+|
T Consensus 388 i~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l 467 (980)
T 3ibv_A 388 IKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYET 467 (980)
T ss_dssp HHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 22221100000000 0 01 11112111 111 11233 246799999999999
Q ss_pred Hhccccchh----------hHHHHHHHHHHHhc-----CCCHHHHHHHHHHHhhhhh--cccccchhhHHHHHHH--hcC
Q 002304 327 GSLVILSEK----------FAGEALNLLVDMLN-----DDSVTVRLQALETMHIMVT--CEHLNLEDKHMHMFLG--TLV 387 (939)
Q Consensus 327 GkL~~~s~~----------fA~~ALd~LvdmLn-----De~~~VRl~Aa~ALgkI~~--~~~i~l~E~aL~~LL~--~L~ 387 (939)
|.++..-.. ...+.++.|..+++ ++.+.||..+.+.+|+.+. ..+-..-+.+++.|+. .+.
T Consensus 468 ~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~ 547 (980)
T 3ibv_A 468 YIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIH 547 (980)
T ss_dssp HHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTT
T ss_pred HHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhcccccc
Confidence 888753211 11356788888876 9999999999999999985 1111233456666777 777
Q ss_pred CCCHHHHHHHHHHHhhc----cCCchhHHHHHHHHHHHhhccC--c---c-----------------chHHHHHHHHHhh
Q 002304 388 DNSELVRCAARKILKLV----KTPKLEFFRLFIDGLLENLKIY--P---Q-----------------DEADVFSVLFFIG 441 (939)
Q Consensus 388 D~~~dVR~aA~~aLg~i----~l~~~~~l~~~l~~LL~~L~~~--p---e-----------------Dr~~I~~aL~~LG 441 (939)
|+++.||.+|..++... +-.=..-++.+++.+.+.|..- | + +.-.++++++.|-
T Consensus 548 ~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li 627 (980)
T 3ibv_A 548 NTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLI 627 (980)
T ss_dssp CCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHH
Confidence 89999999999888652 2110122344566665555421 2 1 2455888888885
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.02 E-value=0.046 Score=68.55 Aligned_cols=146 Identities=9% Similarity=0.023 Sum_probs=106.7
Q ss_pred hHHHHHHHhhCC--CCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHhhc-----CCCHHHHHHHHHHHhc
Q 002304 189 GCCCRAVELLRD--HEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIR-----DMRMEVRVEAFNALGK 261 (939)
Q Consensus 189 ~i~~~l~~lL~D--dd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~-----D~s~~VR~~AA~ALG~ 261 (939)
-+++.+.+.+.+ .+...|.+|+-++|.+++..... ...+.+..++..|.++.+ |+...||..+++.+|+
T Consensus 451 ~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~----~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSED----TEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHH----HHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCch----hHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 345666666654 68999999999999987643211 112445678888888886 6888899999999999
Q ss_pred ccC-C--cHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccch----
Q 002304 262 VGM-I--SEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSE---- 334 (939)
Q Consensus 262 i~~-v--s~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~---- 334 (939)
... . .+++| ..++..+..+|.|+...|..+|+.|+.++.....
T Consensus 527 y~~wl~~~~~~L------------------------------~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~ 576 (1023)
T 4hat_C 527 YPRFLKAHWNFL------------------------------RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFV 576 (1023)
T ss_dssp CHHHHHHCHHHH------------------------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhccHHHH------------------------------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 853 1 12222 2244568889998889999999999977775321
Q ss_pred --------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 335 --------KFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 335 --------~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
.+....+..+...+.+-...-+..+.+|+|.+..
T Consensus 577 ~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 577 IQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp SCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2556677778888888888888999999999874
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.99 E-value=0.3 Score=56.41 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=78.2
Q ss_pred HhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhc
Q 002304 307 FVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTL 386 (939)
Q Consensus 307 LI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L 386 (939)
++.+-.- ...+++=|+.=+.+.-..-|+++.+|++.++|+.+|++..||.+|++.|..+... .......+.|..+|
T Consensus 34 Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 34 ILDGVKG-GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLL 109 (507)
T ss_dssp HHHGGGS-CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHT
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHH
Confidence 3444432 3588889999999988889999999999999999999999999999999999853 34457889999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 002304 387 VDNSELVRCAARKILKLV 404 (939)
Q Consensus 387 ~D~~~dVR~aA~~aLg~i 404 (939)
.-+++.-+..++.+|-.+
T Consensus 110 qtdd~~E~~~V~~sL~sl 127 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSI 127 (507)
T ss_dssp TCCCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHH
Confidence 999988888887776554
No 106
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.67 E-value=0.17 Score=60.46 Aligned_cols=215 Identities=11% Similarity=0.077 Sum_probs=134.5
Q ss_pred hhhHHHHHHh-hhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCC--C-chHHHHHHHHHH-Hhcchh
Q 002304 146 PHLLFTVCLG-LTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDH--E-DCVRCAAVRVVS-EWGKML 220 (939)
Q Consensus 146 ~~~L~~~L~~-ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Dd--d-~~VR~aAV~aLg-~lg~~~ 220 (939)
.++.+..+.. +....-..=||+|+.+|..+...-- ..+...-++.++..|++| | +.||. +.+.|- .+...-
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~---~~Vg~~~l~~li~~L~~d~~D~e~v~~-~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR---LEVGIQAMEHLIHVLQTDRSDSEIIGY-ALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT---THHHHHTHHHHHHHHHSCTTCHHHHHH-HHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH---HHhhhhhHHHHHHHHhcccccHHHHHH-HHHHHHHHhCCCC
Confidence 3455555554 4444558899999999999975321 122233467888888544 2 33444 666663 232210
Q ss_pred hhhc------ccccccccc-------hhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhh
Q 002304 221 IACI------DEKNRIDCS-------DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKF 287 (939)
Q Consensus 221 ~~~~------~~~~~i~lv-------ddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~ 287 (939)
.... ..++-..+. .+.+..|+.+|+..+..||..|.+.|.-+-.-.++...+. ++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~----Il-------- 162 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQI----IL-------- 162 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHH----HH--------
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHH----HH--------
Confidence 0000 000000111 2456679999999999999999999988743222211111 11
Q ss_pred ccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhh----H-HHHHHHHHHHhcCCCH----HHHHH
Q 002304 288 HSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKF----A-GEALNLLVDMLNDDSV----TVRLQ 358 (939)
Q Consensus 288 ~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~f----A-~~ALd~LvdmLnDe~~----~VRl~ 358 (939)
-.++.++.|+..|.|....||.+|+--|..+...++++ | +.|++.|.+++..|.. .|=..
T Consensus 163 -----------~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~D 231 (651)
T 3grl_A 163 -----------VSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVED 231 (651)
T ss_dssp -----------HSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHH
T ss_pred -----------hCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHH
Confidence 14678999999999999999999999999999887774 2 4688999999999876 56566
Q ss_pred HHHHHhhhhhcc---cccchh-hHHHHHHHhcC
Q 002304 359 ALETMHIMVTCE---HLNLED-KHMHMFLGTLV 387 (939)
Q Consensus 359 Aa~ALgkI~~~~---~i~l~E-~aL~~LL~~L~ 387 (939)
++..|..+.... +--++| ..++.|..+|+
T Consensus 232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~ 264 (651)
T 3grl_A 232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFE 264 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGC
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhC
Confidence 666666665311 111333 23556666665
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.40 E-value=0.062 Score=64.24 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHH-HhhccCCC
Q 002304 236 VFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGT-FVHGFEDE 314 (939)
Q Consensus 236 af~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~ga-LI~~LeDE 314 (939)
.+.+|.+.|+.+++.+|..|+.+|+++-.- +..... ++..+.++. +...|.|+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l-------------------------~~~~~~v~~ll~~lL~D~ 88 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKL-------------------------LLREQVVHIVLTETLTDN 88 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHH-------------------------HHHTTHHHHHHHTTTTCS
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHH-------------------------HHHcCCHHHHHHHHcCCC
Confidence 345677889999999999999999999642 222111 113445555 55679999
Q ss_pred cHHHHHHHHHHHHhcccc-chhhHH-----HHHHHHHHHhcC
Q 002304 315 FYEVRKSACSSLGSLVIL-SEKFAG-----EALNLLVDMLND 350 (939)
Q Consensus 315 ~~eVR~aAaeALGkL~~~-s~~fA~-----~ALd~LvdmLnD 350 (939)
+.+||.+|+.+|+.|+.. .+++.. .++++|..+++.
T Consensus 89 ~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~ 130 (684)
T 4gmo_A 89 NIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKA 130 (684)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHh
Confidence 999999999999998743 233322 266777777653
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.22 E-value=0.24 Score=59.11 Aligned_cols=164 Identities=17% Similarity=0.218 Sum_probs=103.9
Q ss_pred cchhHHHHHHHhhc-CCCHHHHHHHHHHHhccc-CCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhh
Q 002304 232 CSDVVFIQLCSMIR-DMRMEVRVEAFNALGKVG-MISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVH 309 (939)
Q Consensus 232 lvddaf~aLc~aL~-D~s~~VR~~AA~ALG~i~-~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~ 309 (939)
-+.+.++.||+.+. ---..=|+.|..+|-.+. .....+ .+.+.++|+.
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~V------------------------------g~~~l~~li~ 67 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEV------------------------------GIQAMEHLIH 67 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHH------------------------------HHHTHHHHHH
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHh------------------------------hhhhHHHHHH
Confidence 45788899999885 445677999999998883 322222 1223334444
Q ss_pred ccCC--CcHHHHHHHHHHHHhccccc---------------------hhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 002304 310 GFED--EFYEVRKSACSSLGSLVILS---------------------EKFA--GEALNLLVDMLNDDSVTVRLQALETMH 364 (939)
Q Consensus 310 ~LeD--E~~eVR~aAaeALGkL~~~s---------------------~~fA--~~ALd~LvdmLnDe~~~VRl~Aa~ALg 364 (939)
.|++ +|.++=+++.++|..+-... ..|. .+.++.|+++|+.++.+||+.|++.|.
T Consensus 68 ~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~ 147 (651)
T 3grl_A 68 VLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLT 147 (651)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHH
Confidence 4422 23333334444443222110 0111 457899999999999999999999999
Q ss_pred hhhhcccccc------hhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchh-----HHHHHHHHHHHhhcc
Q 002304 365 IMVTCEHLNL------EDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLE-----FFRLFIDGLLENLKI 425 (939)
Q Consensus 365 kI~~~~~i~l------~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~-----~l~~~l~~LL~~L~~ 425 (939)
-+.....-.+ ....++.|+.+|+|...-||.++..+|..+.-.+.+ .++-+.+.|..-++.
T Consensus 148 ~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 148 SLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 9885221112 235788999999999999999999888876544433 233345556655544
No 109
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.12 E-value=1 Score=57.23 Aligned_cols=232 Identities=11% Similarity=0.077 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccc-cccc-------
Q 002304 160 PYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK-NRID------- 231 (939)
Q Consensus 160 ~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~-~~i~------- 231 (939)
+.+.||......+..+...... .-++++++.+.++++. ++..+..+..+|..+...+....+.. .+.+
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 5699999999999998876431 2245677888888865 56778889999998876432111100 0000
Q ss_pred -cchhHHHHHHHhhcC-------------------CCHHHHHHHHHHHhcc-cCCcHHHHHHHhhHHHhhhhhhhhhccc
Q 002304 232 -CSDVVFIQLCSMIRD-------------------MRMEVRVEAFNALGKV-GMISEIVLLQTLSKKVLGATKEKKFHSL 290 (939)
Q Consensus 232 -lvddaf~aLc~aL~D-------------------~s~~VR~~AA~ALG~i-~~vs~~~LlqtL~kklm~~lk~kr~~~~ 290 (939)
...++|..+...+++ .+..++..|-++++.. .+++.+.+...
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~----------------- 246 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAE----------------- 246 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhc-----------------
Confidence 011233333333322 1122333333333332 22222221100
Q ss_pred cchhhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccc--hh----h----HHHHHHHHHHHh--------cCCC
Q 002304 291 GAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILS--EK----F----AGEALNLLVDML--------NDDS 352 (939)
Q Consensus 291 l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s--~~----f----A~~ALd~LvdmL--------nDe~ 352 (939)
....++.+...+.|+ ++|.+|++.|.++.... ++ + ....+..+.... .|++
T Consensus 247 ---------~~~ll~~l~~~l~~~--~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d 315 (1204)
T 3a6p_A 247 ---------NCKLLEILCLLLNEQ--ELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKH 315 (1204)
T ss_dssp ---------TSHHHHHHHHGGGCT--TTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHH
T ss_pred ---------cchHHHHHHHHcCCH--HHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHH
Confidence 012455566677765 79999999998887543 11 0 011233344443 3445
Q ss_pred HHHHHHHHHHHhhhhhc-----------ccccchhhHHHHHHHhcCCCCHHHHHHHHH----HHhhccCCchhHHHHHHH
Q 002304 353 VTVRLQALETMHIMVTC-----------EHLNLEDKHMHMFLGTLVDNSELVRCAARK----ILKLVKTPKLEFFRLFID 417 (939)
Q Consensus 353 ~~VRl~Aa~ALgkI~~~-----------~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~----aLg~i~l~~~~~l~~~l~ 417 (939)
..++.+-.+.+..++.. .....-...++.++..+.+++.+|-..+-. .+..........+...+.
T Consensus 316 ~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~ 395 (1204)
T 3a6p_A 316 YVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIP 395 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 67777777777666620 001112367889999999998888776554 233322222233455666
Q ss_pred HHHHhh
Q 002304 418 GLLENL 423 (939)
Q Consensus 418 ~LL~~L 423 (939)
.|++.+
T Consensus 396 ~Ll~vl 401 (1204)
T 3a6p_A 396 KYLRAS 401 (1204)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 110
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.79 E-value=6.2 Score=44.44 Aligned_cols=244 Identities=16% Similarity=0.150 Sum_probs=140.1
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccccccchhHHHHHHHh
Q 002304 164 VREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSM 243 (939)
Q Consensus 164 VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~i~lvddaf~aLc~a 243 (939)
.+-..+..+.++.-.. +.++..++++.++++-.|.+..||...++.|++.+.. +..+...++..|..+
T Consensus 41 ~Kl~~L~q~~EL~l~~---dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---------~~el~~~~l~~L~~L 108 (386)
T 3o2t_A 41 SKITVLKQVQELIINK---DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---------DIELLLKLIANLNML 108 (386)
T ss_dssp HHHHHHHHHHHHHHTT---CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---------CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 5666666666542111 1245667899999999999999999999999876641 334557788899999
Q ss_pred hcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHHHHH
Q 002304 244 IRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSAC 323 (939)
Q Consensus 244 L~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~aAa 323 (939)
++|.++.|-+.|..+.+.+-.. ++...-..+.........|+.| ...-+..+..++.++..||..|+
T Consensus 109 L~d~d~~V~K~~I~~~tslYpl------------~f~~i~~~~~~~~~~e~~W~~m-~~lK~~Il~~~ds~n~GVrl~ai 175 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLYKV------------ALQWMVKSRVISELQEACWDMV-SAMAGDIILLLDSDNDGIRTHAI 175 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHH------------HHHHHHHC-CCCHHHHHHHHHH-HHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHH------------HHHHHhcCCCcchhHHHHHHHH-HHHHHHHHHHhccCCcchHHHHH
Confidence 9999999999999999887421 1111110000000000112211 11223445556677889999988
Q ss_pred HHHHhccc------cc-------------------------hh---hHHHHHHHHHHHhcCC--CHHHHHHHHHHHhhhh
Q 002304 324 SSLGSLVI------LS-------------------------EK---FAGEALNLLVDMLNDD--SVTVRLQALETMHIMV 367 (939)
Q Consensus 324 eALGkL~~------~s-------------------------~~---fA~~ALd~LvdmLnDe--~~~VRl~Aa~ALgkI~ 367 (939)
+=+-.... .. +. -|...++.|++.+.++ +...=...+.+|..|+
T Consensus 176 KFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Ia 255 (386)
T 3o2t_A 176 KFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIA 255 (386)
T ss_dssp HHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence 76633220 00 01 1466789999999864 3333355777777777
Q ss_pred hcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCcc---chHHHHHHHHHhhccc
Q 002304 368 TCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQ---DEADVFSVLFFIGRSH 444 (939)
Q Consensus 368 ~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~pe---Dr~~I~~aL~~LG~~H 444 (939)
-... .+-...+++|+..-. ..|- .+.. ..+..++..+..++-++-++|. -...|-.+|.++|++.
T Consensus 256 k~RP-~~~~rIl~aL~~l~~-n~p~-------t~sk---~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~s~ 323 (386)
T 3o2t_A 256 RQRP-MFMSEVIQAYETLHA-NLPP-------TLAK---SQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQ 323 (386)
T ss_dssp HHSG-GGHHHHHHHHHHHHH-CC-----------CG---GGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTCCH
T ss_pred HhcH-HHHHHHHHHHHhhcC-CCCc-------cHHH---HHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHcccH
Confidence 4211 112234444432210 0000 0111 2345555666666655555653 2668889999999876
No 111
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=90.59 E-value=1.6 Score=45.02 Aligned_cols=136 Identities=7% Similarity=-0.128 Sum_probs=88.4
Q ss_pred Hhh-ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHH
Q 002304 307 FVH-GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLN-DDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLG 384 (939)
Q Consensus 307 LI~-~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLn-De~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~ 384 (939)
|+. +...++.|.|..|+.-|++..... ..+.++.+-..+. ..+|.+-=..+.++|++-... .+...+.+..
T Consensus 59 ~~~~L~~s~~~E~r~la~~~l~~~~~~~---~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~----~~~~~~~i~~ 131 (220)
T 2b6c_A 59 EIEAYYQKTEREYQYVAIDLALQNVQRF---SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH----LTELPTIFAL 131 (220)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHTGGGC---CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS----GGGHHHHHHH
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHhhC---CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC----hHHHHHHHHH
Confidence 443 345589999999999998765221 1234544444443 667777665556677664211 2335577889
Q ss_pred hcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccc--hHHHHHHHHHhhcccccchHHHH
Q 002304 385 TLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD--EADVFSVLFFIGRSHGNFAACII 452 (939)
Q Consensus 385 ~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peD--r~~I~~aL~~LG~~H~~lv~~lv 452 (939)
-..|++..+|+.+...+ +......-.+ .+..++.++..++++ +++|.|+|+.+|++||+.+.+.+
T Consensus 132 W~~s~~~w~rR~ai~~~--l~~~~~~~~~-~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 132 FYGAENFWNRRVALNLQ--LMLKEKTNQD-LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HTTCSSHHHHHHHHHTT--TTCGGGCCHH-HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH--HHHHHCCCHH-HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999887733 3332222222 234566655666665 89999999999999998886655
No 112
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=90.26 E-value=1.1 Score=46.54 Aligned_cols=134 Identities=9% Similarity=-0.077 Sum_probs=79.8
Q ss_pred ccCCCcHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhcCCCHHHH-HHHHHHHhhhhhcccccchhhHHHHHHHhcC
Q 002304 310 GFEDEFYEVRKSACSSLGSLVIL-SEKFAGEALNLLVDMLNDDSVTVR-LQALETMHIMVTCEHLNLEDKHMHMFLGTLV 387 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~-s~~fA~~ALd~LvdmLnDe~~~VR-l~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~ 387 (939)
+.+.++.|.|..|+.-+...... .++. ...+..++. ..++|.|- .-|..++|++-... .+...+.+..-..
T Consensus 69 L~~~~~~E~r~~ai~~l~~~~k~~~~~~-l~~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~----p~~~~~~l~~W~~ 141 (232)
T 3jxy_A 69 LWDLPEREFQAAALDIMQKYKKHINETH-IPFLEELIV--TKSWWDSVDSIVPTFLGDIFLKH----PELISAYIPKWIA 141 (232)
T ss_dssp HHTSSBHHHHHHHHHHHHHTGGGCCGGG-HHHHHHHHT--SSCCHHHHHHHTTTHHHHHHHHC----GGGGGGTHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHc--cCCChHHHHHhhHHHHHHHHHHC----HHHHHHHHHHHhc
Confidence 34667889999999888654211 1111 112333333 46778764 33456667665321 2224567888899
Q ss_pred CCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccc--hHHHHHHHHHhhcccccchHHHHH
Q 002304 388 DNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD--EADVFSVLFFIGRSHGNFAACIIK 453 (939)
Q Consensus 388 D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peD--r~~I~~aL~~LG~~H~~lv~~lv~ 453 (939)
|++..+|+.+...+ ...-...-.+.+. .++.++..++++ ++.|-|+|..+|++||+.|...+.
T Consensus 142 s~~~w~rR~ai~~~--l~~~~~~d~~~~~-~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 142 SDNIWLQRAAILFQ--LKYKQKMDEELLF-WIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp SSCHHHHHHHHHTT--TTCGGGCCHHHHH-HHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCchHHHHHHHHHH--HHHHhCCCHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999886643 2221111122222 334444555554 899999999999999888854443
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=89.55 E-value=17 Score=38.54 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=76.5
Q ss_pred chHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh--------ccccc-
Q 002304 303 AAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT--------CEHLN- 373 (939)
Q Consensus 303 a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~--------~~~i~- 373 (939)
..+.++..-.|...+||+-.++=+++.....++++.++++.|..+++|+++.|-.+||.+.+.+=. .+...
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~ 133 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGD 133 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 344444445689999999999999988888888999999999999999999999999998887632 11110
Q ss_pred -----ch--hhHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 002304 374 -----LE--DKHMHMFLGTLVDNSELVRCAARKILKL 403 (939)
Q Consensus 374 -----l~--E~aL~~LL~~L~D~~~dVR~aA~~aLg~ 403 (939)
+. -..-..++..++..+.-||-.+.+.+..
T Consensus 134 ~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 134 SAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 00 1233567778888999999877765544
No 114
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=89.26 E-value=12 Score=38.41 Aligned_cols=155 Identities=10% Similarity=0.042 Sum_probs=98.6
Q ss_pred HhhcCCCHHHHHHHHHHHhccc-CCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCCcHHHHH
Q 002304 242 SMIRDMRMEVRVEAFNALGKVG-MISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRK 320 (939)
Q Consensus 242 ~aL~D~s~~VR~~AA~ALG~i~-~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~eVR~ 320 (939)
.+...+....|..|+..|+.+. ...++.+. . +..|+. ...+|.+=-
T Consensus 62 ~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~-~------------------------------~~~~l~--~~~nWd~~D 108 (220)
T 2b6c_A 62 AYYQKTEREYQYVAIDLALQNVQRFSLEEVV-A------------------------------FKAYVP--QKAWWDSVD 108 (220)
T ss_dssp HHHTSSSHHHHHHHHHHHHHTGGGCCHHHHH-H------------------------------GGGGTT--TTCSHHHHH
T ss_pred HHHcCchhHHHHHHHHHHHHHHhhCCHHHHH-H------------------------------HHHHhc--cCCcHHHHH
Confidence 4556688999999999999875 33333321 0 011111 144555544
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHH
Q 002304 321 SACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKI 400 (939)
Q Consensus 321 aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~a 400 (939)
..+.++|++....+ ....+.+..-..|++..||+.|+.++-.-... .-.+..++.+...+.|+...||+++..+
T Consensus 109 ~~a~~~~~~~~~~~---~~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~---~~~~~~~~i~~~~~~d~~~yV~kavgW~ 182 (220)
T 2b6c_A 109 AWRKFFGSWVALHL---TELPTIFALFYGAENFWNRRVALNLQLMLKEK---TNQDLLKKAIIYDRTTEEFFIQKAIGWS 182 (220)
T ss_dssp HHHHHHHHHHHHSG---GGHHHHHHHHTTCSSHHHHHHHHHTTTTCGGG---CCHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCh---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44444555433232 23557788899999999999999877543321 2224456666669999999999999999
Q ss_pred HhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhc
Q 002304 401 LKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGR 442 (939)
Q Consensus 401 Lg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~ 442 (939)
|..++-.+.+.+...+ +-++. ++-+...|++.|+.
T Consensus 183 Lr~~~k~~~~~v~~fl-----~~~~l--~~~~~r~Aikkl~~ 217 (220)
T 2b6c_A 183 LRQYSKTNPQWVEELM-----KELVL--SPLAQREGSKYLAK 217 (220)
T ss_dssp HHHHTTTCHHHHHHHH-----HHSCC--CHHHHHHHTTTSSC
T ss_pred HHHHHhhCHHHHHHHH-----hhccC--CHHHHHHHHHhccc
Confidence 9999877776644444 21233 36677777777764
No 115
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=88.53 E-value=7.9 Score=40.04 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=17.3
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHh
Q 002304 193 RAVELLRDHEDCVRCAAVRVVSEW 216 (939)
Q Consensus 193 ~l~~lL~Ddd~~VR~aAV~aLg~l 216 (939)
.+.++.+.+..+.|..|+..+...
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~ 88 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKY 88 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHH
Confidence 455566777788888888888654
No 116
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=86.41 E-value=3.2 Score=52.10 Aligned_cols=232 Identities=14% Similarity=0.106 Sum_probs=117.3
Q ss_pred HHHHHHhhhccccCCChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhh----CCCCchH
Q 002304 130 SVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELL----RDHEDCV 205 (939)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL----~Ddd~~V 205 (939)
..|+........+.--+..++..+.+++-..++.||+.|=.+|....+.= .+ ...-+++.+++.| .|.+...
T Consensus 115 ~~R~~~~~~~r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~--~g--s~~~iip~ll~~L~~~~~~~~~~~ 190 (997)
T 1vsy_5 115 QSRVLLHSTNRKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQL--VG--SYGVVINKIIPSLEKAIKDHDYMK 190 (997)
T ss_dssp HHHHHHSCCCBCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTB--TT--HHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHhhccccCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhc--cc--HHHHHHHHHHHHHhccccCCCHHH
Confidence 46666555554466677888999999999999999999999998776431 11 1122445555555 4666666
Q ss_pred HHHHHHHHH--HhcchhhhhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhh
Q 002304 206 RCAAVRVVS--EWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATK 283 (939)
Q Consensus 206 R~aAV~aLg--~lg~~~~~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk 283 (939)
=.-|+..|. .++.... ..-+.......+|+++..-..+.|..-+..++..+ +...+
T Consensus 191 iKGaLy~L~~k~~~~~~~------~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i----------------~~~~~ 248 (997)
T 1vsy_5 191 IQVILNVLLIKKIHRKLM------TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDI----------------VIGIK 248 (997)
T ss_dssp HHHHHHHTTSHHHHHHGG------GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHH----------------HTSCC
T ss_pred HHHHHHHHhhhhhhhHHh------cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHH----------------Hhccc
Confidence 666777665 1111110 01112233444455544433344444333333222 11110
Q ss_pred hhhhccccchhhhhhhhhcchHHHhhccCCCcH-----HHHHHHHHHHHhccccchhhHHHHHHHHHHHh-cCCC--HHH
Q 002304 284 EKKFHSLGAAECFEISASAAAGTFVHGFEDEFY-----EVRKSACSSLGSLVILSEKFAGEALNLLVDML-NDDS--VTV 355 (939)
Q Consensus 284 ~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE~~-----eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmL-nDe~--~~V 355 (939)
.-...... +..++..+- -.|++- .+|.+-.+..-. ..+.-.+..+.|+++. ++.. |-.
T Consensus 249 ~p~~~~~~--------~~~~~~~i~--~~d~~i~~~~~~~~~~~~~~r~~----~~~~~~~L~~~l~~~~~~~~h~~Wk~ 314 (997)
T 1vsy_5 249 IPSSVCVI--------SDQAFLPLA--PPDGTINLQVEAVKLAKKKKREY----YLSLLVDLQDKLLDKLDNEKDMGWKI 314 (997)
T ss_dssp CCCSCCCC--------CGGGTGGGC--CSCSSTTSHHHHHHHHTTHHHHH----HHHHHHHHHHHHHHHHHSSTTCCSCH
T ss_pred CchHHHHH--------HHHHHhccC--CCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccCCChhHHH
Confidence 00000000 001110000 012221 111111110000 0001123445555665 4456 777
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 002304 356 RLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKIL 401 (939)
Q Consensus 356 Rl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aL 401 (939)
+.-|+.-|-.+.......+..+.+..++..+.|+.|.+|+-+..++
T Consensus 315 ~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l 360 (997)
T 1vsy_5 315 RMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSL 360 (997)
T ss_dssp HHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 7777777555554344566678888888888888888888777655
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=84.97 E-value=15 Score=38.95 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHH
Q 002304 317 EVRKSACSSLGSLV-ILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRC 395 (939)
Q Consensus 317 eVR~aAaeALGkL~-~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~ 395 (939)
+.|........++. ..+|.+..+.++.++....|....||.-.+.=+++... .+..+....++.|..+|+|+++.|-|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~-~k~~l~~~~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK-VKVELLPHVINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 68888888888854 34788889999999999999999999999999999884 34566678999999999999999998
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHhhccCcc---chHHHHHHHHHhh
Q 002304 396 AARKILKLVKTPKLEFFRLFIDGLLENLKIYPQ---DEADVFSVLFFIG 441 (939)
Q Consensus 396 aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~pe---Dr~~I~~aL~~LG 441 (939)
.+..+... +....+.-+-..|. +-...|..+..+-
T Consensus 109 ~~I~~~~~-----------iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK 146 (257)
T 3gs3_A 109 RVIQACGS-----------IYKNGLQYLCSLMEPGDSAEQAWNILSLIK 146 (257)
T ss_dssp HHHHHHHH-----------HHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------HHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 88665544 22333333333332 2467898888876
No 118
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=83.94 E-value=1.2 Score=55.75 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=67.0
Q ss_pred chHHHhhccCCCcH-HHHHH-HHHHHHhccc--cchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhhcccccc---
Q 002304 303 AAGTFVHGFEDEFY-EVRKS-ACSSLGSLVI--LSEKFAGEALNLLVDMLN-DDSVTVRLQALETMHIMVTCEHLNL--- 374 (939)
Q Consensus 303 a~gaLI~~LeDE~~-eVR~a-AaeALGkL~~--~s~~fA~~ALd~LvdmLn-De~~~VRl~Aa~ALgkI~~~~~i~l--- 374 (939)
.+|.+.+..++++. +.... |...+..++. ..++....+++.|....+ +.+| +|..++.-|.-+--..-..+
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 34445555566655 55554 4344555542 244555667777777676 6799 99999888765542111111
Q ss_pred -hhhHHHHHHHhcCCCC-HHHHHHHHHHHhhc-cCC
Q 002304 375 -EDKHMHMFLGTLVDNS-ELVRCAARKILKLV-KTP 407 (939)
Q Consensus 375 -~E~aL~~LL~~L~D~~-~dVR~aA~~aLg~i-~l~ 407 (939)
.+...+.++.+|.|+. .|||+.|+.+|+.+ +-.
T Consensus 840 ~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 840 EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 1346688899999999 99999999999755 443
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=82.13 E-value=6 Score=44.55 Aligned_cols=190 Identities=12% Similarity=0.004 Sum_probs=112.9
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchh---hhh
Q 002304 147 HLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKML---IAC 223 (939)
Q Consensus 147 ~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~---~~~ 223 (939)
+++++.++++..|++..||+..+.=|.+.+.... .+...+.+.+..+|+|+++.|-..|+.+.+.+=... +..
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~----el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI----ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888899999999999999999988876543 455667888899999999999999999887553321 111
Q ss_pred cccc-----cccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhh---------hhhhhhhcc
Q 002304 224 IDEK-----NRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLG---------ATKEKKFHS 289 (939)
Q Consensus 224 ~~~~-----~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~---------~lk~kr~~~ 289 (939)
+... ..-......=..|+++++..+.-||..|.+-+-.+= +.|+-....-+ .+......+
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI------l~qS~~~~d~~~p~~~~~d~SL~~VP~nH 211 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI------VTLSPRMADSEIPRRQEHDISLDRIPRDH 211 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH------HHTSCCCTTCCCCGGGTTSCCGGGSCTTC
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH------HHhCCCCCCcccccccCCCCCHhhCCCCC
Confidence 1100 000111222346778889999999999999887641 11110000000 000000000
Q ss_pred -ccchhhhhhhhhcchHHHhhccCCC--cHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 002304 290 -LGAAECFEISASAAAGTFVHGFEDE--FYEVRKSACSSLGSLVILSEKFAGEALNLLVD 346 (939)
Q Consensus 290 -~l~~d~~~l~~s~a~gaLI~~LeDE--~~eVR~aAaeALGkL~~~s~~fA~~ALd~Lvd 346 (939)
-+.....+-=..+..+-|+..|.++ ..-.=.+.+.+|+.++...|.|..++++.|..
T Consensus 212 p~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~ 271 (386)
T 3o2t_A 212 PYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYET 271 (386)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 0100000000223344455555432 23344678999999998899999999998864
No 120
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=80.34 E-value=2.4 Score=48.95 Aligned_cols=93 Identities=19% Similarity=0.355 Sum_probs=69.5
Q ss_pred hhcCCchHH-HHHHhhhccccCCChhhHHHHHHhhhc----------CCCHHHHHHHHHHHHhhhhcccccchhhhh--h
Q 002304 123 LCFASSVSV-RLWLLRNAERFNVRPHLLFTVCLGLTK----------DPYPYVREAALNGLVCLLKHVVFEDVDLIQ--G 189 (939)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~~~~~v~~~~L~~~L~~ll~----------D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~--~ 189 (939)
|+++++... ..| ..|+.+|.-..-+++..+.++++ +.||.|=..|.--+|++...- +.+..+++ +
T Consensus 370 L~WSP~H~se~FW-~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~gr~i~~~lg 447 (480)
T 1ho8_A 370 LCWSPPHVDNGFW-SDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESIDVLDKTG 447 (480)
T ss_dssp CCCCGGGGCHHHH-HHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHHHS
T ss_pred cccCCCccchhHH-HHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cchhHHHHHcC
Confidence 466655544 555 68999999999999999999997 348999999999999886421 11112211 2
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhc
Q 002304 190 CCCRAVELLRDHEDCVRCAAVRVVSEWG 217 (939)
Q Consensus 190 i~~~l~~lL~Ddd~~VR~aAV~aLg~lg 217 (939)
.-..+.+++.++|++||..|..++..|-
T Consensus 448 ~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 448 GKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3456788999999999999999998763
No 121
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=80.33 E-value=16 Score=46.16 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHhcc-cCCcHH---HHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhhccCCC-----cH
Q 002304 246 DMRMEVRVEAFNALGKV-GMISEI---VLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDE-----FY 316 (939)
Q Consensus 246 D~s~~VR~~AA~ALG~i-~~vs~~---~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~~LeDE-----~~ 316 (939)
..+|..+.++.+++|-| |...++ ..+.. +++.++...+.. -.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~-----------------------------vi~~Ll~L~e~~~~kd~k~ 540 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT-----------------------------VIKDLLGLCEQKRGKDNKA 540 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH-----------------------------HHHHHHHHHHHSCSHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHH-----------------------------HHHHHhcccccccccchhH
Confidence 46799999999999999 655432 21111 223344444322 33
Q ss_pred HHHHHHHHHHHhccc---cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 002304 317 EVRKSACSSLGSLVI---LSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT 368 (939)
Q Consensus 317 eVR~aAaeALGkL~~---~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~ 368 (939)
-||...+..+|+... ..++|-...+..|...+.|.++.|...|+.|+.+|+.
T Consensus 541 ~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 541 IIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 455556678888653 3677778899999999999999999999999999985
No 122
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=79.89 E-value=38 Score=43.15 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=59.7
Q ss_pred HHHHHHhhhc-CCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhh--CCCCchHHHHHHHHHHHhcchh-hhhc
Q 002304 149 LFTVCLGLTK-DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELL--RDHEDCVRCAAVRVVSEWGKML-IACI 224 (939)
Q Consensus 149 L~~~L~~ll~-D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL--~Ddd~~VR~aAV~aLg~lg~~~-~~~~ 224 (939)
+..++..... +.|+.+|+.|-+.|.++..... .|..+...| .+.++.||..|+..|-..-... ...
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l- 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM- 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS-
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC-
Confidence 4445544333 2388999999999988865421 133343333 5668899999998877432110 000
Q ss_pred ccccccccchhHHHHHHHhhc---CCCHHHHHHHHHHHhcc
Q 002304 225 DEKNRIDCSDVVFIQLCSMIR---DMRMEVRVEAFNALGKV 262 (939)
Q Consensus 225 ~~~~~i~lvddaf~aLc~aL~---D~s~~VR~~AA~ALG~i 262 (939)
.++.+..+-+..+..+..... +....||..++.++..|
T Consensus 83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~I 123 (1204)
T 3a6p_A 83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEM 123 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH
Confidence 001111122333444443321 35799999999999987
No 123
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=70.62 E-value=11 Score=47.56 Aligned_cols=132 Identities=8% Similarity=0.106 Sum_probs=87.3
Q ss_pred CcHHHHHHHHHHHHhccc-cch----hhHHHHHHHHHHHhcCC-----CHHHHHHHHHHHhhhhh--cccccchhhHHHH
Q 002304 314 EFYEVRKSACSSLGSLVI-LSE----KFAGEALNLLVDMLNDD-----SVTVRLQALETMHIMVT--CEHLNLEDKHMHM 381 (939)
Q Consensus 314 E~~eVR~aAaeALGkL~~-~s~----~fA~~ALd~LvdmLnDe-----~~~VRl~Aa~ALgkI~~--~~~i~l~E~aL~~ 381 (939)
-.|..+.+++-|+|.++. -.+ .+-.+.++.|+.+.+.. -..||......+|+... ..+-.+-+.++..
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~ 570 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNK 570 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHH
Confidence 359999999999999953 222 35567788888777554 23455555689998764 1233455788899
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhccCCch------------hHHHHHHHHHHHhhccCc-cchHHHHHHHHHhhcccc
Q 002304 382 FLGTLVDNSELVRCAARKILKLVKTPKL------------EFFRLFIDGLLENLKIYP-QDEADVFSVLFFIGRSHG 445 (939)
Q Consensus 382 LL~~L~D~~~dVR~aA~~aLg~i~l~~~------------~~l~~~l~~LL~~L~~~p-eDr~~I~~aL~~LG~~H~ 445 (939)
|++.+.|.++.|..+|..++..+.-... .-++.+++.+-....+++ ++....++|++.+-..-|
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p 647 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQT 647 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999966421111 123344444444455554 345667777777654433
No 124
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.89 E-value=1e+02 Score=30.26 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=52.8
Q ss_pred cCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cccccc-----hhhHHHHHHH
Q 002304 311 FEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEHLNL-----EDKHMHMFLG 384 (939)
Q Consensus 311 LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~i~l-----~E~aL~~LL~ 384 (939)
+..++|..=..-++.+.. .+.-+..|+..|...++..++.|.+.|+.-|--+.. +| ..+ .++-++.+..
T Consensus 28 ~~~~Dw~~~leicD~I~~----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG-~~Fh~evas~~Fl~el~~ 102 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGS----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCG-KIFHLEVCSRDFATEVRA 102 (163)
T ss_dssp CSSCCHHHHHHHHHHHHH----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC-HHHHHHHTSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh-HHHHHHHhhHHHHHHHHH
Confidence 556788765555555544 233457889999999999999999999888766653 22 111 1344555555
Q ss_pred hcCC-CCHHHHHHHHH
Q 002304 385 TLVD-NSELVRCAARK 399 (939)
Q Consensus 385 ~L~D-~~~dVR~aA~~ 399 (939)
++.. .++.||+.+..
T Consensus 103 l~~~~~~~~Vk~kil~ 118 (163)
T 1x5b_A 103 VIKNKAHPKVCEKLKS 118 (163)
T ss_dssp HHHTTCCHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHH
Confidence 5543 45666655544
No 125
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=47.12 E-value=49 Score=34.28 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH----HHhhhhhcc-cccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccC
Q 002304 340 ALNLLVDMLNDDSVTVRLQALE----TMHIMVTCE-HLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKT 406 (939)
Q Consensus 340 ALd~LvdmLnDe~~~VRl~Aa~----ALgkI~~~~-~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l 406 (939)
+.+.+..-..|++..+|..|+. -|..+.... .-.-.++.++.+...+.|+...||+++..+|..++.
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk 180 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI 180 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Confidence 4556677778888888888887 444422100 011223455666667778888888888777776653
No 126
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=43.90 E-value=42 Score=32.68 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=42.0
Q ss_pred ccCCCcHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhccc
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILS-EKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEH 371 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s-~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~ 371 (939)
+..|++|-.=-...+-++++.-.+ .++..+.++.|...|+|..+.|..+|++-|..+...|.
T Consensus 19 ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs 81 (140)
T 1vdy_A 19 VTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG 81 (140)
T ss_dssp TTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred HhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence 344444433333334444444323 24457899999999999999999999999998876553
No 127
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=40.66 E-value=55 Score=33.85 Aligned_cols=69 Identities=7% Similarity=-0.101 Sum_probs=52.4
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHH----HHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcc
Q 002304 148 LLFTVCLGLTKDPYPYVREAALN----GLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGK 218 (939)
Q Consensus 148 ~L~~~L~~ll~D~Dp~VRraAl~----AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~ 218 (939)
.....+..+..|++..+||+|+. -|..+.... .+..-...++..+...+.|++..||.+..-+|...|.
T Consensus 108 ~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~--~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk 180 (235)
T 1t06_A 108 IAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNA--FSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI 180 (235)
T ss_dssp SHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGG--SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccC--cChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Confidence 35677889999999999999999 556543221 1112335567777889999999999999999988775
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=34.15 E-value=1.2e+02 Score=28.93 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=54.5
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-ccc-cc---chhhHHHHHHH
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEH-LN---LEDKHMHMFLG 384 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~-i~---l~E~aL~~LL~ 384 (939)
.+.+++|..=..-++.+. ..+.-+..|+..|...++..++.|-+.|+.-|--+.. +|. +. -..+-++.+..
T Consensus 17 ~l~~~dw~~ileicD~I~----~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 17 MNTAEDWGLILDICDKVG----QSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp TSSSCCHHHHHHHHHHHT----TSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH----CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 356788876555555543 3444567899999999999999999988877766542 221 00 11345555555
Q ss_pred hcCCCCHHHHHHHHH
Q 002304 385 TLVDNSELVRCAARK 399 (939)
Q Consensus 385 ~L~D~~~dVR~aA~~ 399 (939)
++...++.||+.+..
T Consensus 93 l~~~~~~~Vk~kil~ 107 (140)
T 3ldz_A 93 VLNKGHPKVCEKLKA 107 (140)
T ss_dssp HHHHSCHHHHHHHHH
T ss_pred HhccCCHHHHHHHHH
Confidence 555566667655544
No 129
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=32.26 E-value=1.2e+02 Score=33.51 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=67.7
Q ss_pred hHHHhhccCCCcHHHHHHHHHHHHhccccchhhHH-----HHHHHHHHHhcCCCHHHHHHHHHHHhhhhhc-----cccc
Q 002304 304 AGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAG-----EALNLLVDMLNDDSVTVRLQALETMHIMVTC-----EHLN 373 (939)
Q Consensus 304 ~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~-----~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~-----~~i~ 373 (939)
+.+++..|...+...++.|..+|.++-...++|+. .-+..|+++..+.+.....-+..||+.+=.+ +-+.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 44677778778889999999999984444556653 4689999999999999999999999998643 2111
Q ss_pred chhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 002304 374 LEDKHMHMFLGTLVDNSELVRCAARKIL 401 (939)
Q Consensus 374 l~E~aL~~LL~~L~D~~~dVR~aA~~aL 401 (939)
..+-+..+...+...++.|-+.+-++|
T Consensus 200 -~~~fI~~lyslv~s~~~~V~k~AL~LL 226 (339)
T 3dad_A 200 -HSDTIQWLYTLCASLSRLVVKTALKLL 226 (339)
T ss_dssp -CHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 234555555555555555544444433
No 130
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=29.19 E-value=1.4e+02 Score=28.84 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=40.8
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHH
Q 002304 321 SACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVR 394 (939)
Q Consensus 321 aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR 394 (939)
.|+..|.+++. ++ ....++.|+.-++|-+|-|....+.-|..++ ++.+|.+..+|..++..=.
T Consensus 16 ~a~~~L~~~~~--~~-i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~--------~~l~p~I~~vl~s~D~~W~ 78 (134)
T 3ut4_A 16 STIDQLCKLID--NE-IEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ--------SIAMPHILTILQGNDIMWK 78 (134)
T ss_dssp TTHHHHTTCCH--HH-HHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH--------HHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhCCH--HH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHcc--------HhhHHHHHHHHHcCChHHH
Confidence 34555555542 11 2456778888888888888888888887765 3567777777765554443
No 131
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.23 E-value=2e+02 Score=28.12 Aligned_cols=77 Identities=10% Similarity=0.037 Sum_probs=54.6
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhc-ccccc-hhhhhhHHHHHHHhhCC-CCchHHHHHHHHHHHhcchh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKH-VVFED-VDLIQGCCCRAVELLRD-HEDCVRCAAVRVVSEWGKML 220 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~-~~~~~-~~l~~~i~~~l~~lL~D-dd~~VR~aAV~aLg~lg~~~ 220 (939)
.++.+.+..|.+.+++.+|.|.--|+.-|..+..- |.... .-...++...+..++.. .++.||..+.+.+-.|+..+
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 45667888899999999999999999888766543 22111 11113345555666654 67899999999999999754
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=22.63 E-value=5.2e+02 Score=24.82 Aligned_cols=86 Identities=12% Similarity=0.199 Sum_probs=56.2
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-ccc-c---cchhhHHHHHHH
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEH-L---NLEDKHMHMFLG 384 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~-i---~l~E~aL~~LL~ 384 (939)
.+..++|..=..-++.+.. .+.-+..|+..|...++..++.|-+.|+.-|--+.. +|. + .-.++-++.|..
T Consensus 13 ~l~~~dw~~~leicD~I~~----~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~k 88 (148)
T 1mhq_A 13 SMSEQDWSAIQNFCEQVNT----DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK 88 (148)
T ss_dssp TCSSCCHHHHHHHHHHHHH----SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHc----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 3556777665554544433 334467899999999999999999999888876653 221 1 112456677777
Q ss_pred hcCC------CCHHHHHHHHH
Q 002304 385 TLVD------NSELVRCAARK 399 (939)
Q Consensus 385 ~L~D------~~~dVR~aA~~ 399 (939)
++.+ .++.||+.+..
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~ 109 (148)
T 1mhq_A 89 VLSPKYLGSWATGKVKGRVIE 109 (148)
T ss_dssp TTCCSTTSCCCCHHHHHHHHH
T ss_pred HHccccCCCCCCHHHHHHHHH
Confidence 7764 36677765544
No 133
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=22.04 E-value=5.4e+02 Score=24.82 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=58.5
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cc-cc---cchhhHHHHHHH
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CE-HL---NLEDKHMHMFLG 384 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~-~i---~l~E~aL~~LL~ 384 (939)
.+..++|..=..-++.+.. .+.-+..|+..|...++..++.|-+.|+.-|--+.. +| .+ .-.++-++.|..
T Consensus 23 ~l~~~dw~~ileicD~I~~----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~k 98 (149)
T 3g2s_A 23 LNKELDWASINGFCEQLNE----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIK 98 (149)
T ss_dssp TCSSCCHHHHHHHHHHGGG----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHC----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 3556777655555544433 344467899999999999999999998887776642 22 11 113456777777
Q ss_pred hcCC------CCHHHHHHHHHHHh
Q 002304 385 TLVD------NSELVRCAARKILK 402 (939)
Q Consensus 385 ~L~D------~~~dVR~aA~~aLg 402 (939)
++.+ .++.||+.+..++.
T Consensus 99 l~~~k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 99 VVSPKYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp HHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHcccccCCCCCHHHHHHHHHHHH
Confidence 7765 46778876655443
No 134
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.82 E-value=6.5e+02 Score=25.64 Aligned_cols=175 Identities=12% Similarity=0.040 Sum_probs=87.9
Q ss_pred hhHHHHHHHhhcC---C-CHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHhh
Q 002304 234 DVVFIQLCSMIRD---M-RMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVH 309 (939)
Q Consensus 234 ddaf~aLc~aL~D---~-s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI~ 309 (939)
+.++..+-.++.+ | ++.++...+.++...|... .|...|-.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~-----------------------------------~Al~~l~~ 126 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPD-----------------------------------AALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHH-----------------------------------HHHHHHTT
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHH-----------------------------------HHHHHHhC
Confidence 4566666666643 2 5677777777776665421 11222222
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-cccccchhhHHHHHHHhcC-
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEHLNLEDKHMHMFLGTLV- 387 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~i~l~E~aL~~LL~~L~- 387 (939)
-.+.+++...+..+.+++. .+-|.+.+..++.. +.+...+++ +.++..+.. .++ -++++..+-.+++
T Consensus 127 ---~~~~~~~~~l~~~~~~~g~--~~~A~~~l~~~~~~-~p~~~~~~l--~~a~~~l~~~~~~---~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 127 ---GDSLECMAMTVQILLKLDR--LDLARKELKKMQDQ-DEDATLTQL--ATAWVSLAAGGEK---LQDAYYIFQEMADK 195 (291)
T ss_dssp ---CCSHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH-CTTCHHHHH--HHHHHHHHHCTTH---HHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhh-CcCcHHHHH--HHHHHHHHhCchH---HHHHHHHHHHHHHh
Confidence 2456677766777777764 22233333333333 233333343 233222211 011 1345555544443
Q ss_pred -CCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHH---HHHHHHHhhcccccchHHHHHHHhhhcCC
Q 002304 388 -DNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEAD---VFSVLFFIGRSHGNFAACIIKEVCQEIEP 461 (939)
Q Consensus 388 -D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~---I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p 461 (939)
-.++.+......++...+ .. +.+...+...|...|.+... ...++...|+. .+.+..++.++++. +|
T Consensus 196 ~p~~~~~~~~la~~~~~~g--~~---~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~-~eaa~~~~~~~~~~-~P 266 (291)
T 3mkr_A 196 CSPTLLLLNGQAACHMAQG--RW---EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP-PEVTNRYLSQLKDA-HR 266 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTT--CH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH-CT
T ss_pred CCCcHHHHHHHHHHHHHcC--CH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHh-CC
Confidence 446666655555555544 33 33666666777777876432 22233444542 23455677777776 55
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.64 E-value=5.3e+02 Score=26.36 Aligned_cols=86 Identities=22% Similarity=0.200 Sum_probs=54.0
Q ss_pred ccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhh-ccc----ccchhhHHHHHHH
Q 002304 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVT-CEH----LNLEDKHMHMFLG 384 (939)
Q Consensus 310 ~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~-~~~----i~l~E~aL~~LL~ 384 (939)
.+.+++|..=..-++.+.. .+.-+..|+..|...++..++.|.+.|+.-|--+.. .|. ....++-++.|..
T Consensus 20 ~~~~~dw~~ileicD~I~~----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~ 95 (226)
T 3zyq_A 20 LLLETDWESILQICDLIRQ----GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD 95 (226)
T ss_dssp TCSSCCHHHHHHHHHHHHT----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhC----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence 4567788766666666643 223357899999999999999999999888876642 121 0112344444444
Q ss_pred hcC-CCCHHHHHHHHH
Q 002304 385 TLV-DNSELVRCAARK 399 (939)
Q Consensus 385 ~L~-D~~~dVR~aA~~ 399 (939)
+++ ..++.||+.+..
T Consensus 96 l~~~~~~~~Vk~kil~ 111 (226)
T 3zyq_A 96 LLKRQVEVNVRNKILY 111 (226)
T ss_dssp HHHHCCCHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHH
Confidence 443 245667665544
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.47 E-value=2.9e+02 Score=26.27 Aligned_cols=77 Identities=13% Similarity=0.045 Sum_probs=53.7
Q ss_pred CChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhh-cccccc-hhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchh
Q 002304 144 VRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLK-HVVFED-VDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKML 220 (939)
Q Consensus 144 v~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~-~~~~~~-~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~ 220 (939)
.++.+.+..|.+.+++.+|.|---|+.-|..+.. .|.... .-...++...+..+++..++.||....+.+..|+..+
T Consensus 38 ~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 38 TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 4567778888999999999998888876665543 222111 0111234455566666688999999999999999755
Done!