BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002305
         (939 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger
          Length = 87

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 9/63 (14%)

Query: 830 CCICRHKH-GICIKCNYGNCQTTFHPTCARSAGFYLNVKS----TGG----NFQHKAYCE 880
           C +C+ K  G  I+C+  NC T FH TCA+ AG Y+ ++     TGG    + +  AYC+
Sbjct: 20  CYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCD 79

Query: 881 KHS 883
            H+
Sbjct: 80  VHT 82



 Score = 37.4 bits (85), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 50 IKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICAREA 89
          I   R KL C +C+ K  GA ++C    C T+FH  CA++A
Sbjct: 11 IPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA 51


>pdb|2DB6|A Chain A, Solution Structure Of Rsgi Ruh-051, A C1 Domain Of Stac3
           From Human Cdna
          Length = 74

 Score = 30.4 bits (67), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 683 PRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPI-LICSGCKVAVHLDC--YRNA 739
           P++++DK         D   + P+ CD+C R   + N   L C  CK  +H  C  Y   
Sbjct: 10  PKLVNDK----PHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEM 65

Query: 740 KESTGP 745
           +  +GP
Sbjct: 66  QRCSGP 71


>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
          Length = 71

 Score = 29.6 bits (65), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 708 CDICRRSETI-LNPILICSGCKVAVHLDCYRNAKESTGPW 746
           C IC   E+   N IL C  C +AVH +CY       G W
Sbjct: 19  CSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQW 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,871,907
Number of Sequences: 62578
Number of extensions: 1009020
Number of successful extensions: 1625
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 7
length of query: 939
length of database: 14,973,337
effective HSP length: 108
effective length of query: 831
effective length of database: 8,214,913
effective search space: 6826592703
effective search space used: 6826592703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)