Query 002305
Match_columns 939
No_of_seqs 423 out of 1520
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 20:57:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lq6_A Bromodomain-containing 99.6 6.8E-16 2.3E-20 139.7 4.9 71 48-118 9-86 (87)
2 2lq6_A Bromodomain-containing 99.2 5.8E-12 2E-16 114.0 3.2 64 822-885 10-84 (87)
3 2ku3_A Bromodomain-containing 98.8 9.4E-10 3.2E-14 96.0 2.9 56 701-756 12-68 (71)
4 2l43_A N-teminal domain from h 98.7 4.8E-09 1.6E-13 95.1 2.5 54 702-755 22-76 (88)
5 1wev_A Riken cDNA 1110020M19; 98.5 3.6E-08 1.2E-12 89.3 2.4 59 700-758 11-76 (88)
6 2yt5_A Metal-response element- 98.5 8.4E-08 2.9E-12 81.9 4.1 52 703-754 4-61 (66)
7 4gne_A Histone-lysine N-methyl 98.3 7.5E-07 2.6E-11 83.5 6.6 77 702-795 12-96 (107)
8 1xwh_A Autoimmune regulator; P 98.2 8.2E-07 2.8E-11 76.1 4.7 53 700-756 3-57 (66)
9 2yql_A PHD finger protein 21A; 98.2 8.2E-07 2.8E-11 73.7 3.8 50 700-753 4-55 (56)
10 1f62_A Transcription factor WS 98.2 7.5E-07 2.6E-11 72.3 2.9 46 707-753 2-49 (51)
11 1mm2_A MI2-beta; PHD, zinc fin 98.1 1.3E-06 4.3E-11 73.9 4.0 49 702-754 6-56 (61)
12 2l5u_A Chromodomain-helicase-D 98.1 2.3E-06 8E-11 72.3 4.4 51 700-754 6-58 (61)
13 2puy_A PHD finger protein 21A; 98.0 1.9E-06 6.5E-11 72.4 3.2 48 704-755 4-53 (60)
14 1fp0_A KAP-1 corepressor; PHD 98.0 4.1E-06 1.4E-10 75.9 5.3 52 699-754 19-72 (88)
15 2lri_C Autoimmune regulator; Z 98.0 2.9E-06 1E-10 73.0 3.9 47 705-755 12-60 (66)
16 2e6r_A Jumonji/ARID domain-con 98.0 2E-06 6.7E-11 78.6 3.0 54 700-754 11-66 (92)
17 2ysm_A Myeloid/lymphoid or mix 97.9 1.7E-05 5.7E-10 74.2 6.8 94 703-835 5-103 (111)
18 2e6s_A E3 ubiquitin-protein li 97.8 1.2E-05 4.2E-10 71.1 4.2 47 706-753 27-76 (77)
19 3v43_A Histone acetyltransfera 97.8 1.9E-05 6.4E-10 74.3 5.4 92 706-835 6-111 (112)
20 3asl_A E3 ubiquitin-protein li 97.7 1.6E-05 5.6E-10 69.0 3.3 46 707-753 20-68 (70)
21 3shb_A E3 ubiquitin-protein li 97.6 2.2E-05 7.6E-10 69.5 3.1 46 707-753 28-76 (77)
22 1wen_A Inhibitor of growth fam 97.6 4.9E-05 1.7E-09 66.2 5.0 50 703-755 14-66 (71)
23 2kwj_A Zinc finger protein DPF 97.6 2.4E-05 8E-10 73.9 2.5 50 706-756 59-110 (114)
24 2kwj_A Zinc finger protein DPF 97.6 4.3E-05 1.5E-09 72.1 4.0 74 706-802 2-89 (114)
25 3o36_A Transcription intermedi 97.5 5.1E-05 1.7E-09 76.9 4.3 50 703-756 2-53 (184)
26 2vnf_A ING 4, P29ING4, inhibit 97.5 2.7E-05 9.1E-10 65.7 1.8 47 704-753 9-58 (60)
27 2k16_A Transcription initiatio 97.5 3.6E-05 1.2E-09 67.2 2.6 53 703-756 16-70 (75)
28 2jmi_A Protein YNG1, ING1 homo 97.5 4.8E-05 1.6E-09 69.3 3.3 51 703-756 24-78 (90)
29 3c6w_A P28ING5, inhibitor of g 97.5 3.7E-05 1.3E-09 64.6 1.9 47 704-753 8-57 (59)
30 3u5n_A E3 ubiquitin-protein li 97.4 6.4E-05 2.2E-09 77.6 4.1 50 703-756 5-56 (207)
31 3v43_A Histone acetyltransfera 97.4 7E-05 2.4E-09 70.4 3.8 50 704-753 60-111 (112)
32 1weu_A Inhibitor of growth fam 97.4 9E-05 3.1E-09 67.6 4.1 51 703-756 34-87 (91)
33 2g6q_A Inhibitor of growth pro 97.3 6.2E-05 2.1E-09 63.9 1.9 49 703-754 9-60 (62)
34 2ro1_A Transcription intermedi 97.2 0.00012 4.3E-09 74.7 2.6 46 705-754 2-49 (189)
35 1we9_A PHD finger family prote 97.2 0.00033 1.1E-08 59.3 4.5 53 702-754 3-58 (64)
36 2ysm_A Myeloid/lymphoid or mix 97.1 0.00029 1E-08 65.8 4.1 49 706-755 55-105 (111)
37 3ask_A E3 ubiquitin-protein li 97.1 0.00021 7.3E-09 74.9 3.4 47 706-753 175-224 (226)
38 2lv9_A Histone-lysine N-methyl 97.0 0.00055 1.9E-08 63.0 5.2 47 706-754 29-76 (98)
39 1x4i_A Inhibitor of growth pro 96.9 0.00037 1.3E-08 60.5 2.4 49 704-755 5-56 (70)
40 1wee_A PHD finger family prote 96.8 0.00085 2.9E-08 58.2 3.9 52 703-755 14-67 (72)
41 3o70_A PHD finger protein 13; 96.8 0.00099 3.4E-08 57.5 4.1 50 703-754 17-67 (68)
42 1wew_A DNA-binding family prot 96.6 0.0011 3.9E-08 58.4 3.7 52 703-756 14-74 (78)
43 2vpb_A Hpygo1, pygopus homolog 96.6 0.00061 2.1E-08 58.4 1.6 50 703-752 6-64 (65)
44 1wem_A Death associated transc 96.3 0.0014 4.8E-08 57.3 2.3 51 704-756 15-72 (76)
45 1wep_A PHF8; structural genomi 96.3 0.0015 5.2E-08 57.6 2.4 52 703-755 10-64 (79)
46 2kgg_A Histone demethylase jar 96.0 0.0022 7.6E-08 52.3 1.8 46 707-752 4-52 (52)
47 2xb1_A Pygopus homolog 2, B-ce 95.9 0.0029 1E-07 58.9 2.6 51 706-756 4-63 (105)
48 2ri7_A Nucleosome-remodeling f 95.8 0.0013 4.5E-08 65.7 -0.2 51 703-754 6-59 (174)
49 2rsd_A E3 SUMO-protein ligase 95.8 0.0058 2E-07 52.4 3.7 49 704-754 9-65 (68)
50 3o7a_A PHD finger protein 13 v 95.6 0.0067 2.3E-07 49.4 2.9 44 709-753 7-51 (52)
51 3kqi_A GRC5, PHD finger protei 94.8 0.0074 2.5E-07 52.7 1.2 48 708-755 12-62 (75)
52 2lbm_A Transcriptional regulat 94.4 0.013 4.5E-07 57.4 2.0 49 702-754 60-117 (142)
53 3ql9_A Transcriptional regulat 92.9 0.025 8.4E-07 54.7 0.8 48 703-754 55-111 (129)
54 3kv5_D JMJC domain-containing 91.9 0.034 1.2E-06 64.5 0.5 48 706-754 38-88 (488)
55 3lqh_A Histone-lysine N-methyl 91.8 0.052 1.8E-06 55.3 1.7 49 706-754 3-63 (183)
56 1xn7_A Hypothetical protein YH 91.6 0.08 2.7E-06 46.7 2.4 35 220-254 3-37 (78)
57 2k02_A Ferrous iron transport 90.6 0.096 3.3E-06 47.3 2.0 34 221-254 4-37 (87)
58 1wew_A DNA-binding family prot 87.3 0.3 1E-05 42.8 2.7 32 827-859 16-49 (78)
59 2rsd_A E3 SUMO-protein ligase 86.3 0.26 9E-06 42.1 1.7 30 827-857 10-41 (68)
60 3kv4_A PHD finger protein 8; e 86.3 0.088 3E-06 60.4 -1.6 49 706-754 5-56 (447)
61 1wem_A Death associated transc 86.0 0.39 1.3E-05 41.7 2.7 29 827-858 16-46 (76)
62 1we9_A PHD finger family prote 85.9 0.31 1.1E-05 40.8 2.0 31 827-859 6-39 (64)
63 1wil_A KIAA1045 protein; ring 85.6 0.31 1.1E-05 43.7 1.9 50 703-754 13-76 (89)
64 1weu_A Inhibitor of growth fam 83.5 0.73 2.5E-05 41.9 3.4 32 827-859 36-69 (91)
65 1wep_A PHF8; structural genomi 83.1 0.68 2.3E-05 40.5 3.0 29 828-859 13-44 (79)
66 1wen_A Inhibitor of growth fam 82.0 0.84 2.9E-05 39.5 3.1 32 827-859 16-49 (71)
67 3o70_A PHD finger protein 13; 82.0 0.65 2.2E-05 39.9 2.3 31 827-860 19-51 (68)
68 3c6w_A P28ING5, inhibitor of g 81.1 0.58 2E-05 39.1 1.7 32 827-859 9-42 (59)
69 2l0k_A Stage III sporulation p 80.8 0.92 3.2E-05 41.3 3.1 49 222-271 10-60 (93)
70 2lv9_A Histone-lysine N-methyl 80.2 0.68 2.3E-05 42.4 2.0 46 828-885 29-76 (98)
71 1wee_A PHD finger family prote 79.9 0.64 2.2E-05 40.0 1.6 31 827-860 16-49 (72)
72 2zet_C Melanophilin; complex, 79.5 0.71 2.4E-05 45.7 2.0 48 706-754 69-117 (153)
73 2k16_A Transcription initiatio 79.3 0.71 2.4E-05 39.8 1.7 31 828-860 19-51 (75)
74 4gne_A Histone-lysine N-methyl 79.3 0.85 2.9E-05 42.6 2.3 31 827-858 15-45 (107)
75 2puy_A PHD finger protein 21A; 78.6 0.77 2.6E-05 38.1 1.6 30 827-859 5-34 (60)
76 1jko_C HIN recombinase, DNA-in 78.2 2 6.7E-05 32.8 3.8 31 224-255 13-43 (52)
77 3pur_A Lysine-specific demethy 77.8 1.1 3.7E-05 52.4 3.1 37 718-754 55-94 (528)
78 2yql_A PHD finger protein 21A; 77.7 1.2 3.9E-05 36.6 2.4 30 827-859 9-38 (56)
79 1xwh_A Autoimmune regulator; P 77.1 1.1 3.9E-05 37.9 2.3 30 827-859 8-37 (66)
80 2lri_C Autoimmune regulator; Z 76.7 0.84 2.9E-05 39.0 1.3 47 827-884 12-58 (66)
81 2xb1_A Pygopus homolog 2, B-ce 76.7 1 3.5E-05 41.7 2.1 30 828-858 4-36 (105)
82 2vnf_A ING 4, P29ING4, inhibit 76.5 0.98 3.3E-05 37.7 1.7 32 827-859 10-43 (60)
83 1r69_A Repressor protein CI; g 76.2 2.6 8.7E-05 34.1 4.2 53 220-272 1-53 (69)
84 2l5u_A Chromodomain-helicase-D 75.8 0.98 3.4E-05 37.8 1.5 31 827-860 11-41 (61)
85 3b7h_A Prophage LP1 protein 11 75.8 2.4 8.3E-05 35.2 4.0 54 219-272 6-61 (78)
86 1uxc_A FRUR (1-57), fructose r 75.2 1.5 5E-05 37.1 2.5 48 234-281 1-52 (65)
87 3o7a_A PHD finger protein 13 v 74.9 1.1 3.8E-05 36.2 1.6 28 831-860 7-36 (52)
88 2kgg_A Histone demethylase jar 74.9 1.2 4E-05 36.1 1.7 29 829-858 4-35 (52)
89 1f62_A Transcription factor WS 74.3 1.2 4.1E-05 35.6 1.6 29 829-859 2-32 (51)
90 1zug_A Phage 434 CRO protein; 73.5 3.3 0.00011 33.7 4.2 52 220-271 3-54 (71)
91 2ri7_A Nucleosome-remodeling f 73.4 0.95 3.3E-05 44.9 1.0 29 827-858 8-39 (174)
92 2g6q_A Inhibitor of growth pro 73.4 1.5 5.3E-05 36.9 2.1 32 56-88 11-44 (62)
93 2jmi_A Protein YNG1, ING1 homo 73.4 1.3 4.5E-05 40.1 1.8 31 827-858 26-58 (90)
94 4bbq_A Lysine-specific demethy 73.1 1 3.6E-05 41.8 1.2 37 718-754 72-114 (117)
95 1mm2_A MI2-beta; PHD, zinc fin 72.4 1.6 5.4E-05 36.5 2.0 30 827-859 9-38 (61)
96 2r1j_L Repressor protein C2; p 72.3 2.7 9.2E-05 33.8 3.3 52 220-271 5-57 (68)
97 1tc3_C Protein (TC3 transposas 70.9 3.1 0.00011 31.0 3.2 33 221-254 10-42 (51)
98 1adr_A P22 C2 repressor; trans 70.2 3.1 0.0001 34.3 3.3 53 220-272 5-58 (76)
99 1y7y_A C.AHDI; helix-turn-heli 70.0 3.8 0.00013 33.5 3.9 54 219-272 12-66 (74)
100 2vpb_A Hpygo1, pygopus homolog 70.0 1.8 6.3E-05 36.8 1.9 30 828-858 9-41 (65)
101 2xi8_A Putative transcription 69.8 3.1 0.0001 33.2 3.1 49 224-272 5-54 (66)
102 2ict_A Antitoxin HIGA; helix-t 69.7 3.5 0.00012 36.0 3.7 57 216-272 4-61 (94)
103 3t76_A VANU, transcriptional r 69.3 3.4 0.00012 36.8 3.6 64 206-272 13-76 (88)
104 2yt5_A Metal-response element- 68.6 2.5 8.6E-05 35.4 2.4 31 827-859 6-40 (66)
105 2k9q_A Uncharacterized protein 68.1 3.2 0.00011 34.8 3.0 53 220-272 2-55 (77)
106 2wiu_B HTH-type transcriptiona 67.9 4.3 0.00015 34.6 3.9 57 216-272 8-65 (88)
107 3bs3_A Putative DNA-binding pr 67.4 3.7 0.00013 33.9 3.2 52 221-272 11-63 (76)
108 2l8n_A Transcriptional repress 66.9 3.1 0.0001 35.4 2.6 49 233-281 9-58 (67)
109 2ku3_A Bromodomain-containing 66.5 3.2 0.00011 35.9 2.7 32 827-860 16-51 (71)
110 2b5a_A C.BCLI; helix-turn-heli 65.7 5.2 0.00018 33.1 3.8 53 220-272 10-63 (77)
111 1zbd_B Rabphilin-3A; G protein 65.5 3.6 0.00012 39.8 3.1 49 706-754 56-107 (134)
112 2htj_A P fimbrial regulatory p 65.2 2.7 9.2E-05 36.2 2.0 32 223-254 4-35 (81)
113 4b6d_A RAC GTPase-activating p 65.1 2.7 9.2E-05 35.3 1.9 33 705-737 19-51 (61)
114 3kqi_A GRC5, PHD finger protei 64.7 1.9 6.4E-05 37.4 0.9 30 828-859 10-42 (75)
115 4bbq_A Lysine-specific demethy 64.2 6.9 0.00023 36.2 4.7 81 706-809 8-98 (117)
116 2jt1_A PEFI protein; solution 63.2 3.4 0.00012 36.2 2.3 33 222-254 7-45 (77)
117 1fp0_A KAP-1 corepressor; PHD 62.9 4.4 0.00015 36.6 3.0 47 827-884 25-71 (88)
118 1faq_A RAF-1; transferase, ser 62.6 5.2 0.00018 31.8 3.1 32 705-739 14-45 (52)
119 3asl_A E3 ubiquitin-protein li 61.9 2.9 9.9E-05 36.0 1.5 29 829-859 20-50 (70)
120 2kpj_A SOS-response transcript 61.8 6.5 0.00022 34.4 3.9 54 219-272 8-62 (94)
121 1wev_A Riken cDNA 1110020M19; 61.8 3.2 0.00011 37.2 1.9 31 827-859 16-50 (88)
122 2a20_A Regulating synaptic mem 61.5 5.4 0.00018 33.6 3.0 52 702-753 6-59 (62)
123 1ptq_A Protein kinase C delta 61.1 5.5 0.00019 31.3 2.9 33 705-737 11-44 (50)
124 3trb_A Virulence-associated pr 60.6 7.8 0.00027 35.3 4.3 59 216-274 9-69 (104)
125 2l43_A N-teminal domain from h 60.4 4.1 0.00014 36.5 2.3 32 827-860 25-60 (88)
126 1iym_A EL5; ring-H2 finger, ub 60.3 5.6 0.00019 31.2 2.9 49 703-753 3-51 (55)
127 1x57_A Endothelial differentia 60.2 11 0.00039 32.4 5.2 55 219-273 12-67 (91)
128 2ao9_A Phage protein; structur 60.2 5.1 0.00017 39.7 3.2 41 233-274 48-119 (155)
129 3cec_A Putative antidote prote 59.7 7.1 0.00024 34.7 3.8 56 217-272 15-71 (104)
130 1u2w_A CADC repressor, cadmium 59.6 5.1 0.00017 37.2 2.9 54 223-276 46-116 (122)
131 1x4i_A Inhibitor of growth pro 59.4 4.7 0.00016 34.7 2.4 32 828-860 7-40 (70)
132 2yuu_A NPKC-delta, protein kin 59.3 6.3 0.00022 34.6 3.3 35 704-738 27-62 (83)
133 2e6s_A E3 ubiquitin-protein li 59.1 3.5 0.00012 36.2 1.6 29 829-859 28-58 (77)
134 3omt_A Uncharacterized protein 59.1 5.6 0.00019 32.9 2.8 49 224-272 12-61 (73)
135 1nd9_A Translation initiation 58.5 4.2 0.00014 31.6 1.8 23 233-255 2-24 (49)
136 2a6c_A Helix-turn-helix motif; 58.4 5.9 0.0002 33.9 2.9 57 217-273 15-73 (83)
137 2jvl_A TRMBF1; coactivator, he 57.8 14 0.00049 33.4 5.5 57 216-272 30-89 (107)
138 2enn_A NPKC-theta, protein kin 57.6 6.1 0.00021 34.4 2.9 35 704-738 33-68 (77)
139 1q1h_A TFE, transcription fact 57.2 4.5 0.00015 36.5 2.1 33 222-254 21-54 (110)
140 2ewt_A BLDD, putative DNA-bind 57.1 9.2 0.00031 31.0 3.8 53 220-272 8-63 (71)
141 1wil_A KIAA1045 protein; ring 56.9 3.3 0.00011 37.2 1.1 35 828-864 16-51 (89)
142 2enz_A NPKC-theta, protein kin 56.8 7.9 0.00027 32.4 3.4 35 704-738 22-57 (65)
143 3cuo_A Uncharacterized HTH-typ 56.8 5.4 0.00018 34.7 2.4 34 222-255 27-60 (99)
144 3s8q_A R-M controller protein; 56.5 9.2 0.00032 32.2 3.8 53 220-272 11-64 (82)
145 3uej_A NPKC-delta, protein kin 56.1 5.8 0.0002 33.2 2.4 34 705-738 20-54 (65)
146 2glo_A Brinker CG9653-PA; prot 55.7 8.5 0.00029 31.1 3.3 35 217-252 6-44 (59)
147 2fnf_X Putative RAS effector N 55.7 6.3 0.00022 34.0 2.6 32 704-737 34-65 (72)
148 3o36_A Transcription intermedi 55.6 3.7 0.00013 41.1 1.3 29 828-859 5-33 (184)
149 2x48_A CAG38821; archeal virus 54.4 6.9 0.00024 30.8 2.5 32 222-254 21-52 (55)
150 3rsn_A SET1/ASH2 histone methy 54.2 7.9 0.00027 39.2 3.4 49 830-884 7-58 (177)
151 3rsn_A SET1/ASH2 histone methy 54.1 13 0.00045 37.6 5.0 70 711-804 10-81 (177)
152 3kz3_A Repressor protein CI; f 54.0 9.7 0.00033 32.1 3.5 54 219-272 11-65 (80)
153 2ef8_A C.ECOT38IS, putative tr 53.8 11 0.00038 31.5 3.9 54 219-273 9-64 (84)
154 3jth_A Transcription activator 53.8 5.6 0.00019 35.0 2.1 32 223-255 27-58 (98)
155 3u5n_A E3 ubiquitin-protein li 53.5 4.3 0.00015 41.5 1.4 30 827-859 7-36 (207)
156 1qbj_A Protein (double-strande 53.4 5.8 0.0002 35.0 2.0 33 222-254 13-48 (81)
157 1xmk_A Double-stranded RNA-spe 53.3 4.8 0.00016 35.6 1.5 34 222-255 14-48 (79)
158 2e6r_A Jumonji/ARID domain-con 53.2 4.2 0.00014 36.7 1.1 47 828-884 17-65 (92)
159 2eby_A Putative HTH-type trans 53.1 8.6 0.0003 34.6 3.3 56 217-272 7-64 (113)
160 4a0z_A Transcription factor FA 53.0 5.9 0.0002 40.2 2.4 45 221-266 14-58 (190)
161 2kko_A Possible transcriptiona 51.7 6.7 0.00023 35.6 2.3 32 223-255 29-60 (108)
162 2d8s_A Cellular modulator of i 51.7 7.5 0.00026 34.1 2.5 52 704-755 14-68 (80)
163 3lqh_A Histone-lysine N-methyl 51.6 5.7 0.00019 40.3 1.9 30 828-859 3-38 (183)
164 1y8f_A UNC-13 homolog A, MUNC1 51.5 8.2 0.00028 32.4 2.6 33 705-737 24-57 (66)
165 2l1p_A DNA-binding protein SAT 49.5 8.4 0.00029 34.5 2.4 49 220-271 21-69 (83)
166 1lmb_3 Protein (lambda repress 49.5 12 0.00042 32.1 3.5 53 220-272 17-70 (92)
167 2eli_A Protein kinase C alpha 49.2 10 0.00034 33.6 2.9 35 704-738 27-62 (85)
168 2csz_A Synaptotagmin-like prot 49.2 7.2 0.00025 34.4 1.9 50 703-754 23-73 (76)
169 2elh_A CG11849-PA, LD40883P; s 48.7 8.8 0.0003 33.6 2.5 34 218-252 24-57 (87)
170 3f6w_A XRE-family like protein 47.8 14 0.00047 31.1 3.5 53 220-272 14-67 (83)
171 2zkz_A Transcriptional repress 47.7 7.2 0.00025 34.8 1.8 32 223-254 31-62 (99)
172 3vk0_A NHTF, transcriptional r 47.6 16 0.00053 33.2 4.1 55 219-273 20-75 (114)
173 2heo_A Z-DNA binding protein 1 46.4 8.1 0.00028 32.4 1.8 32 223-254 14-46 (67)
174 3g5g_A Regulatory protein; tra 46.3 16 0.00054 32.7 3.8 61 212-272 18-81 (99)
175 2dbb_A Putative HTH-type trans 45.9 8.2 0.00028 36.7 2.0 37 217-254 8-44 (151)
176 1b0n_A Protein (SINR protein); 45.8 14 0.00048 32.7 3.4 52 221-272 2-55 (111)
177 3i4p_A Transcriptional regulat 45.6 7.3 0.00025 37.9 1.6 32 223-254 7-38 (162)
178 1r71_A Transcriptional repress 45.1 12 0.00041 37.7 3.1 51 217-268 37-87 (178)
179 2ro1_A Transcription intermedi 44.9 6.4 0.00022 39.9 1.1 29 828-859 3-31 (189)
180 1rfh_A RAS association (ralgds 44.0 6.1 0.00021 32.7 0.6 33 704-738 21-53 (59)
181 1kbe_A Kinase suppressor of RA 44.0 11 0.00038 30.4 2.1 29 706-737 15-43 (49)
182 1r79_A Diacylglycerol kinase, 44.0 10 0.00036 33.8 2.2 33 705-737 38-72 (84)
183 2cg4_A Regulatory protein ASNC 43.7 9.2 0.00031 36.5 1.9 32 223-254 12-43 (152)
184 1qgp_A Protein (double strande 43.4 9.3 0.00032 33.1 1.8 33 222-254 17-52 (77)
185 2cfx_A HTH-type transcriptiona 43.3 9.6 0.00033 36.1 2.0 32 223-254 9-40 (144)
186 3shb_A E3 ubiquitin-protein li 43.2 7.8 0.00027 34.0 1.2 29 829-859 28-58 (77)
187 2db6_A SH3 and cysteine rich d 43.1 4.6 0.00016 34.9 -0.3 35 704-738 27-62 (74)
188 2e1c_A Putative HTH-type trans 43.0 9.4 0.00032 37.7 1.9 36 218-254 27-62 (171)
189 3bd1_A CRO protein; transcript 43.0 13 0.00046 31.2 2.7 47 225-272 4-50 (79)
190 2jn6_A Protein CGL2762, transp 42.4 12 0.0004 33.0 2.3 35 218-252 7-42 (97)
191 2cyy_A Putative HTH-type trans 42.3 10 0.00034 36.2 2.0 35 219-254 8-42 (151)
192 3pfq_A PKC-B, PKC-beta, protei 42.0 9.3 0.00032 45.5 2.0 34 704-737 47-81 (674)
193 2ct0_A Non-SMC element 1 homol 42.0 9.7 0.00033 33.1 1.6 47 705-754 15-61 (74)
194 1y0u_A Arsenical resistance op 41.9 9.9 0.00034 33.4 1.7 31 222-254 34-64 (96)
195 1sfx_A Conserved hypothetical 41.2 11 0.00039 32.6 2.0 33 222-254 23-55 (109)
196 3op9_A PLI0006 protein; struct 41.0 18 0.00063 32.4 3.5 57 216-272 5-62 (114)
197 2lbm_A Transcriptional regulat 41.0 10 0.00034 37.2 1.7 29 828-859 64-92 (142)
198 1ub9_A Hypothetical protein PH 40.9 10 0.00034 32.9 1.6 33 222-254 19-51 (100)
199 2w25_A Probable transcriptiona 40.9 11 0.00037 35.9 1.9 32 223-254 11-42 (150)
200 1i1g_A Transcriptional regulat 40.8 11 0.00037 35.2 1.9 32 223-254 8-39 (141)
201 2p5v_A Transcriptional regulat 40.5 11 0.00038 36.4 1.9 32 223-254 14-45 (162)
202 2pn6_A ST1022, 150AA long hypo 40.2 10 0.00034 36.0 1.6 32 223-254 7-38 (150)
203 3pqk_A Biofilm growth-associat 40.1 11 0.00038 33.4 1.8 32 222-254 26-57 (102)
204 3kv4_A PHD finger protein 8; e 40.0 7.8 0.00027 44.5 0.9 29 828-858 5-36 (447)
205 3kjx_A Transcriptional regulat 39.6 12 0.00042 39.6 2.3 51 231-281 8-59 (344)
206 3qq6_A HTH-type transcriptiona 39.4 27 0.00091 29.5 4.0 54 219-272 9-64 (78)
207 2ct0_A Non-SMC element 1 homol 39.4 17 0.00057 31.7 2.7 32 826-859 14-45 (74)
208 1fse_A GERE; helix-turn-helix 39.2 18 0.00061 29.7 2.8 32 222-255 17-48 (74)
209 3f52_A CLP gene regulator (CLG 39.0 21 0.00073 32.2 3.5 56 219-274 27-83 (117)
210 2oqg_A Possible transcriptiona 38.5 13 0.00043 33.2 1.9 33 222-255 24-56 (114)
211 1neq_A DNA-binding protein NER 38.2 22 0.00075 30.5 3.3 47 222-271 12-58 (74)
212 1oyi_A Double-stranded RNA-bin 38.2 9.3 0.00032 34.1 0.9 32 222-254 20-51 (82)
213 1vz0_A PARB, chromosome partit 38.2 16 0.00055 38.0 2.9 50 217-267 119-168 (230)
214 1vyx_A ORF K3, K3RING; zinc-bi 38.0 2.6 8.8E-05 35.1 -2.6 51 703-754 4-56 (60)
215 1y9q_A Transcriptional regulat 37.6 24 0.00083 34.6 4.0 54 219-272 10-64 (192)
216 3kv5_D JMJC domain-containing 37.3 9.1 0.00031 44.3 0.9 29 828-858 37-68 (488)
217 3ask_A E3 ubiquitin-protein li 36.4 11 0.00036 39.7 1.2 30 828-859 175-206 (226)
218 3f6o_A Probable transcriptiona 36.3 19 0.00067 32.9 2.8 51 223-274 22-89 (118)
219 1v5n_A PDI-like hypothetical p 35.8 30 0.001 30.9 3.9 61 795-860 18-79 (89)
220 2d1h_A ST1889, 109AA long hypo 35.7 16 0.00054 31.8 2.1 33 222-254 24-57 (109)
221 1r1u_A CZRA, repressor protein 34.9 16 0.00053 32.8 1.9 32 222-254 29-60 (106)
222 1v5n_A PDI-like hypothetical p 34.4 16 0.00055 32.7 1.9 32 706-739 48-79 (89)
223 2ia0_A Putative HTH-type trans 34.2 16 0.00054 36.0 1.9 37 217-254 16-52 (171)
224 3ivp_A Putative transposon-rel 33.8 32 0.0011 31.5 3.9 56 217-272 9-65 (126)
225 2ecm_A Ring finger and CHY zin 32.6 28 0.00097 26.9 2.9 48 704-753 4-51 (55)
226 1rzs_A Antirepressor, regulato 32.0 27 0.00093 28.5 2.7 46 225-274 3-49 (61)
227 1on2_A Transcriptional regulat 31.3 23 0.0008 32.8 2.5 26 230-255 19-44 (142)
228 2p5k_A Arginine repressor; DNA 31.3 26 0.00088 28.1 2.5 31 225-255 10-46 (64)
229 2hsg_A Glucose-resistance amyl 31.3 21 0.00072 37.5 2.5 49 233-281 2-51 (332)
230 2jpc_A SSRB; DNA binding prote 31.3 21 0.00073 28.3 2.0 26 229-255 10-35 (61)
231 3nw0_A Non-structural maintena 31.1 16 0.00056 38.3 1.5 47 705-754 180-226 (238)
232 3eus_A DNA-binding protein; st 31.0 41 0.0014 28.8 3.9 53 220-272 14-67 (86)
233 1weq_A PHD finger protein 7; s 30.7 32 0.0011 30.9 3.1 35 719-754 44-79 (85)
234 3lsg_A Two-component response 30.5 22 0.00075 31.4 2.1 31 225-255 11-41 (103)
235 2l49_A C protein; P2 bacteriop 29.9 20 0.0007 31.1 1.8 36 220-255 4-39 (99)
236 3mlf_A Transcriptional regulat 29.9 31 0.0011 31.4 3.0 53 221-273 24-77 (111)
237 2jsc_A Transcriptional regulat 29.9 24 0.00082 32.4 2.3 32 222-254 24-55 (118)
238 2x4h_A Hypothetical protein SS 29.6 28 0.00096 32.1 2.8 38 217-254 11-52 (139)
239 2row_A RHO-associated protein 29.5 17 0.00057 32.6 1.1 33 705-737 35-70 (84)
240 3kkc_A TETR family transcripti 29.5 19 0.00066 33.5 1.6 22 230-251 27-50 (177)
241 2hzt_A Putative HTH-type trans 29.1 22 0.00075 32.0 1.9 32 222-254 17-49 (107)
242 4a5n_A Uncharacterized HTH-typ 29.1 22 0.00074 34.0 1.9 33 222-255 29-62 (131)
243 3lfp_A CSP231I C protein; tran 29.0 31 0.0011 30.2 2.8 52 221-272 2-58 (98)
244 3ql9_A Transcriptional regulat 28.6 21 0.00071 34.4 1.7 30 828-860 58-87 (129)
245 3bpv_A Transcriptional regulat 28.6 23 0.0008 32.1 2.0 33 222-254 32-64 (138)
246 1hlv_A CENP-B, major centromer 28.4 39 0.0013 31.0 3.5 58 218-275 9-89 (131)
247 3qkx_A Uncharacterized HTH-typ 28.3 28 0.00094 32.5 2.5 30 225-254 18-49 (188)
248 1v4r_A Transcriptional repress 28.2 27 0.00091 31.1 2.2 39 217-255 12-57 (102)
249 2p7v_B Sigma-70, RNA polymeras 28.2 28 0.00097 28.5 2.2 33 233-275 25-57 (68)
250 2nnn_A Probable transcriptiona 27.9 25 0.00087 31.8 2.1 33 222-254 41-73 (140)
251 3r0a_A Putative transcriptiona 27.4 26 0.00088 32.5 2.0 33 222-254 29-63 (123)
252 1z7u_A Hypothetical protein EF 27.1 28 0.00095 31.6 2.2 32 222-254 25-57 (112)
253 3f1b_A TETR-like transcription 27.0 30 0.001 32.6 2.6 30 225-254 24-55 (203)
254 2vrw_B P95VAV, VAV1, proto-onc 26.9 38 0.0013 37.4 3.7 36 702-737 354-390 (406)
255 3bdd_A Regulatory protein MARR 26.9 27 0.00091 31.8 2.0 33 222-254 34-66 (142)
256 3ulq_B Transcriptional regulat 26.8 26 0.00088 31.0 1.8 32 222-255 35-66 (90)
257 2ku7_A MLL1 PHD3-CYP33 RRM chi 26.7 18 0.00061 33.3 0.8 35 720-754 1-44 (140)
258 3rd3_A Probable transcriptiona 26.7 31 0.001 32.4 2.5 29 224-252 19-49 (197)
259 2rn7_A IS629 ORFA; helix, all 26.6 21 0.0007 32.0 1.2 34 218-251 8-48 (108)
260 2ofy_A Putative XRE-family tra 26.5 49 0.0017 27.8 3.6 51 220-272 16-68 (86)
261 1pdn_C Protein (PRD paired); p 26.5 33 0.0011 30.6 2.5 34 218-252 19-52 (128)
262 2fu4_A Ferric uptake regulatio 26.5 25 0.00085 29.9 1.6 35 220-254 18-59 (83)
263 3b73_A PHIH1 repressor-like pr 26.4 27 0.00093 32.5 2.0 33 222-254 16-50 (111)
264 1u8b_A ADA polyprotein; protei 26.2 19 0.00066 33.4 1.0 31 225-255 84-115 (133)
265 3bja_A Transcriptional regulat 26.1 23 0.00078 32.1 1.4 33 222-254 36-68 (139)
266 3h5t_A Transcriptional regulat 26.0 26 0.00087 37.5 2.0 49 232-280 8-58 (366)
267 2bnm_A Epoxidase; oxidoreducta 25.9 48 0.0016 32.4 3.9 54 219-272 9-64 (198)
268 2lkp_A Transcriptional regulat 25.8 29 0.00098 31.4 2.0 33 222-255 35-67 (119)
269 2a61_A Transcriptional regulat 25.4 29 0.001 31.7 2.0 33 222-254 36-68 (145)
270 3fmy_A HTH-type transcriptiona 25.4 56 0.0019 27.1 3.6 52 222-274 13-65 (73)
271 3lwj_A Putative TETR-family tr 25.3 34 0.0012 32.4 2.5 10 601-610 137-146 (202)
272 3dew_A Transcriptional regulat 25.1 34 0.0011 32.2 2.5 11 600-610 132-142 (206)
273 2fbi_A Probable transcriptiona 25.0 28 0.00095 31.6 1.8 33 222-254 39-71 (142)
274 1lj9_A Transcriptional regulat 25.0 28 0.00097 31.8 1.9 33 222-254 32-64 (144)
275 2ek5_A Predicted transcription 25.0 36 0.0012 32.1 2.6 37 219-255 7-50 (129)
276 3b81_A Transcriptional regulat 24.9 34 0.0012 32.3 2.5 30 225-254 21-52 (203)
277 3tqn_A Transcriptional regulat 24.9 36 0.0012 31.1 2.5 38 218-255 11-55 (113)
278 3nrv_A Putative transcriptiona 24.7 30 0.001 31.8 2.0 33 222-254 43-75 (148)
279 3jvd_A Transcriptional regulat 24.7 16 0.00053 38.8 0.0 51 231-281 4-55 (333)
280 3df8_A Possible HXLR family tr 24.6 29 0.00098 31.6 1.8 33 222-255 30-65 (111)
281 3by6_A Predicted transcription 24.6 36 0.0012 31.8 2.5 38 218-255 13-57 (126)
282 2o38_A Hypothetical protein; a 24.3 57 0.0019 30.3 3.8 54 219-272 39-94 (120)
283 3ky9_A Proto-oncogene VAV; cal 24.3 44 0.0015 39.0 3.8 37 703-739 527-564 (587)
284 3dcf_A Transcriptional regulat 24.2 36 0.0012 32.5 2.6 31 224-254 40-72 (218)
285 3col_A Putative transcription 24.2 36 0.0012 31.8 2.5 28 226-253 21-50 (196)
286 3bj6_A Transcriptional regulat 24.1 28 0.00097 32.1 1.7 33 222-254 43-75 (152)
287 1r1t_A Transcriptional repress 24.1 28 0.00096 32.3 1.6 31 223-254 50-80 (122)
288 3kp7_A Transcriptional regulat 24.0 28 0.00095 32.4 1.6 32 222-254 41-72 (151)
289 2f2e_A PA1607; transcription f 24.0 32 0.0011 32.8 2.1 33 222-255 27-59 (146)
290 1j5y_A Transcriptional regulat 24.0 31 0.0011 34.2 2.0 34 221-254 23-57 (187)
291 3tgn_A ADC operon repressor AD 23.9 27 0.00092 32.1 1.5 32 222-254 41-72 (146)
292 1pb6_A Hypothetical transcript 23.9 37 0.0013 32.3 2.6 26 228-253 31-58 (212)
293 3mzy_A RNA polymerase sigma-H 23.7 39 0.0013 31.3 2.5 30 223-254 116-145 (164)
294 2o8x_A Probable RNA polymerase 23.6 49 0.0017 26.6 2.9 22 233-254 31-52 (70)
295 1s3j_A YUSO protein; structura 23.5 28 0.00097 32.3 1.5 33 222-254 40-72 (155)
296 3ech_A MEXR, multidrug resista 23.3 30 0.001 31.8 1.7 33 222-254 40-72 (142)
297 3neu_A LIN1836 protein; struct 23.2 40 0.0014 31.3 2.5 39 217-255 14-59 (125)
298 2iu5_A DHAS, YCEG, HTH-type dh 23.2 40 0.0014 32.1 2.6 27 228-254 26-54 (195)
299 2bv6_A MGRA, HTH-type transcri 23.1 28 0.00095 31.9 1.4 33 222-254 40-72 (142)
300 2pg4_A Uncharacterized protein 23.0 43 0.0015 29.1 2.6 33 222-254 18-52 (95)
301 1bia_A BIRA bifunctional prote 22.8 38 0.0013 36.6 2.6 34 221-254 7-40 (321)
302 1sgm_A Putative HTH-type trans 22.8 36 0.0012 31.7 2.2 27 227-253 18-46 (191)
303 1u78_A TC3 transposase, transp 22.8 52 0.0018 30.0 3.2 36 218-254 8-43 (141)
304 3ppb_A Putative TETR family tr 22.6 42 0.0014 31.3 2.6 27 228-254 22-50 (195)
305 3kxa_A NGO0477 protein, putati 22.5 50 0.0017 31.5 3.1 49 224-272 72-121 (141)
306 1dw9_A Cyanate lyase; cyanate 22.5 62 0.0021 32.1 3.8 49 221-269 14-63 (156)
307 2pex_A Transcriptional regulat 22.5 32 0.0011 31.9 1.7 34 221-254 49-82 (153)
308 2eth_A Transcriptional regulat 22.5 36 0.0012 31.8 2.1 33 222-254 47-79 (154)
309 2fa5_A Transcriptional regulat 22.5 35 0.0012 32.0 2.0 33 222-254 52-84 (162)
310 1jgs_A Multiple antibiotic res 22.4 41 0.0014 30.5 2.4 33 222-254 37-69 (138)
311 1zk8_A Transcriptional regulat 22.3 41 0.0014 31.4 2.5 23 229-251 22-46 (183)
312 3h5o_A Transcriptional regulat 22.0 19 0.00065 38.1 0.0 49 232-280 3-52 (339)
313 2nyx_A Probable transcriptiona 22.0 33 0.0011 32.7 1.8 33 222-254 48-80 (168)
314 2o20_A Catabolite control prot 21.9 19 0.00065 37.9 0.0 49 232-280 4-53 (332)
315 2fsw_A PG_0823 protein; alpha- 21.7 34 0.0011 30.7 1.6 32 222-254 28-60 (107)
316 3e7q_A Transcriptional regulat 21.7 33 0.0011 32.6 1.7 18 233-250 34-51 (215)
317 2hr3_A Probable transcriptiona 21.7 39 0.0013 30.9 2.1 33 222-254 38-71 (147)
318 2qww_A Transcriptional regulat 21.7 34 0.0012 31.7 1.7 33 222-254 44-76 (154)
319 2rdp_A Putative transcriptiona 21.6 38 0.0013 31.2 2.0 33 222-254 45-77 (150)
320 2g7g_A RHA04620, putative tran 21.6 44 0.0015 33.1 2.6 30 225-254 21-50 (213)
321 2h09_A Transcriptional regulat 21.5 45 0.0015 31.4 2.5 31 225-255 45-76 (155)
322 1z91_A Organic hydroperoxide r 21.5 33 0.0011 31.5 1.6 34 221-254 42-75 (147)
323 3bil_A Probable LACI-family tr 21.5 20 0.00067 38.3 0.0 50 231-280 6-56 (348)
324 3cjn_A Transcriptional regulat 21.4 35 0.0012 32.0 1.7 33 222-254 55-87 (162)
325 3he0_A Transcriptional regulat 21.4 45 0.0015 31.3 2.5 30 225-254 21-52 (196)
326 3mvp_A TETR/ACRR transcription 21.4 44 0.0015 31.9 2.5 30 224-253 35-66 (217)
327 3knw_A Putative transcriptiona 21.2 45 0.0015 31.7 2.5 25 228-252 27-53 (212)
328 2qtq_A Transcriptional regulat 21.2 45 0.0015 31.7 2.5 25 228-252 29-55 (213)
329 1qpz_A PURA, protein (purine n 21.2 38 0.0013 35.7 2.1 48 234-281 1-49 (340)
330 1weo_A Cellulose synthase, cat 21.1 14 0.00049 33.5 -1.0 50 704-754 15-67 (93)
331 3kz9_A SMCR; transcriptional r 21.1 46 0.0016 31.4 2.5 28 226-253 28-57 (206)
332 3qbm_A TETR transcriptional re 21.0 46 0.0016 31.2 2.5 25 228-252 20-46 (199)
333 3to7_A Histone acetyltransfera 21.0 36 0.0012 36.6 1.9 44 212-255 179-230 (276)
334 4hbl_A Transcriptional regulat 20.9 39 0.0013 31.4 1.9 33 222-254 44-76 (149)
335 3nw0_A Non-structural maintena 20.9 33 0.0011 35.9 1.6 31 827-859 180-210 (238)
336 3q0w_A HTH-type transcriptiona 20.8 44 0.0015 33.0 2.4 32 223-254 52-85 (236)
337 2v7f_A RPS19, RPS19E SSU ribos 20.8 33 0.0011 33.6 1.4 36 220-255 54-103 (150)
338 3sqn_A Conserved domain protei 20.8 49 0.0017 37.9 3.1 34 221-254 20-53 (485)
339 2k9s_A Arabinose operon regula 20.7 52 0.0018 29.2 2.6 24 232-255 19-42 (107)
340 1tty_A Sigma-A, RNA polymerase 20.7 55 0.0019 28.3 2.7 32 233-274 38-69 (87)
341 3lhq_A Acrab operon repressor 20.6 47 0.0016 31.5 2.5 7 604-610 149-155 (220)
342 3f0c_A TETR-molecule A, transc 20.6 47 0.0016 31.8 2.5 26 227-252 23-50 (216)
343 2cw1_A SN4M; lambda CRO fold, 20.5 38 0.0013 28.6 1.6 27 224-252 6-32 (65)
344 1je8_A Nitrate/nitrite respons 20.5 44 0.0015 28.7 2.1 31 223-255 28-58 (82)
345 3him_A Probable transcriptiona 20.4 42 0.0014 31.8 2.1 15 233-247 36-50 (211)
346 3nrg_A TETR family transcripti 20.4 46 0.0016 31.8 2.4 29 226-254 24-54 (217)
347 2yqk_A Arginine-glutamic acid 20.3 67 0.0023 26.8 3.0 42 541-587 8-51 (63)
348 3g3z_A NMB1585, transcriptiona 20.3 42 0.0014 30.8 2.0 34 221-254 33-66 (145)
349 3oop_A LIN2960 protein; protei 20.3 39 0.0013 31.0 1.8 33 222-254 40-72 (143)
350 2zb9_A Putative transcriptiona 20.3 47 0.0016 32.0 2.5 18 233-250 43-60 (214)
351 2gxg_A 146AA long hypothetical 20.3 39 0.0013 30.8 1.8 32 222-254 40-71 (146)
352 2g7s_A Transcriptional regulat 20.3 48 0.0017 30.8 2.5 18 233-250 28-45 (194)
353 3k0l_A Repressor protein; heli 20.2 46 0.0016 31.4 2.3 33 222-254 49-81 (162)
354 2wus_R RODZ, putative uncharac 20.1 54 0.0018 30.2 2.7 36 220-255 7-42 (112)
355 2ep4_A Ring finger protein 24; 20.1 56 0.0019 26.9 2.6 48 704-754 14-61 (74)
No 1
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=6.8e-16 Score=139.70 Aligned_cols=71 Identities=30% Similarity=0.551 Sum_probs=59.8
Q ss_pred cCchhhcccccccccccc-cCceeeCCCCCCCcccchhhhhhcCceEEEccc------cCCCceeeeecCCCCCCCCC
Q 002305 48 GGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICAREARHRLEVWGK------YGCNNVELRAFCAKHSDIQD 118 (939)
Q Consensus 48 ~~i~~~r~~LkC~iC~~k-~GAcIqCs~~~C~~sFHvtCA~~aG~~~e~~~~------~g~~~~~~~~yC~~Hr~~~~ 118 (939)
-+||+.||+|+|+||+++ .||||||+.++|.++|||+||+.+|++|++... .....+.+.+||++|+|...
T Consensus 9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPpg~ 86 (87)
T 2lq6_A 9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPGS 86 (87)
T ss_dssp CCCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSSSC
T ss_pred cCCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCcCC
Confidence 368999999999999987 599999999999999999999999999987531 11233568899999998654
No 2
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=5.8e-12 Score=114.00 Aligned_cols=64 Identities=34% Similarity=0.785 Sum_probs=53.6
Q ss_pred cccCC--CccceeccCC-CCeeeecCCcCcccccchhhhhccCceEEEeeC--------CCceeeeeEcCCCCch
Q 002305 822 AFPKG--IDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYLNVKST--------GGNFQHKAYCEKHSLE 885 (939)
Q Consensus 822 ~I~r~--kl~C~iC~~~-~GA~IqC~~~~C~~~FHv~CA~~aG~~~~~k~~--------~g~~~~~iyC~kHs~~ 885 (939)
+|++. +++|.+|+++ .||+|+|..++|.++||++||+.+|++|+++.. .+.+.+.+||++|+|.
T Consensus 10 NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPp 84 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPP 84 (87)
T ss_dssp CCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSS
T ss_pred CCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCc
Confidence 46655 6999999987 599999999999999999999999999987532 1235688999999985
No 3
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.84 E-value=9.4e-10 Score=95.98 Aligned_cols=56 Identities=32% Similarity=0.708 Sum_probs=49.1
Q ss_pred CCCCCCcCcccCCCCC-CCCCEEEecccCcccccccccCccCCCCceeccccccccc
Q 002305 701 SKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLS 756 (939)
Q Consensus 701 sk~~~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~~~ 756 (939)
...++..|.||.+.++ ..|.||.|++|..+||+.|||++.+|+++|+|..|....+
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcCc
Confidence 3556788999998763 5789999999999999999999999999999999987643
No 4
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.69 E-value=4.8e-09 Score=95.07 Aligned_cols=54 Identities=33% Similarity=0.740 Sum_probs=47.9
Q ss_pred CCCCCcCcccCCCCC-CCCCEEEecccCcccccccccCccCCCCceecccccccc
Q 002305 702 KEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELL 755 (939)
Q Consensus 702 k~~~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~~ 755 (939)
.+++..|.||.+.++ ..|.||.|++|..+||+.|||++.+|++.|+|..|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456789999998763 578999999999999999999999999999999998863
No 5
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.48 E-value=3.6e-08 Score=89.30 Aligned_cols=59 Identities=25% Similarity=0.619 Sum_probs=48.8
Q ss_pred CCCCCCCcCcccCCCCC-CCCCEEEecccCcccccccccCcc------CCCCceecccccccccCC
Q 002305 700 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK------ESTGPWYCELCEELLSSR 758 (939)
Q Consensus 700 ~sk~~~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYGi~~------ip~~~WlCd~C~~~~~~~ 758 (939)
+..+++..|.||...+. ..|.||+|++|..+||+.||+.+. +|.+.|+|..|.......
T Consensus 11 ~~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred ccCCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 34456789999998764 468999999999999999999652 689999999998875543
No 6
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.47 E-value=8.4e-08 Score=81.87 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=44.3
Q ss_pred CCCCcCcccCCCCC-CCCCEEEecccCcccccccccCcc----C-CCCceeccccccc
Q 002305 703 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK----E-STGPWYCELCEEL 754 (939)
Q Consensus 703 ~~~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYGi~~----i-p~~~WlCd~C~~~ 754 (939)
.++..|.||...++ ..+.||+|++|..+||+.||+.+. + |++.|+|..|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45688999998753 578999999999999999999753 3 7899999999875
No 7
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.30 E-value=7.5e-07 Score=83.52 Aligned_cols=77 Identities=26% Similarity=0.460 Sum_probs=61.9
Q ss_pred CCCCCcCcccCCCCCCCCCEEEec--ccCcccccccccCccCCCCceecccccccccCCCCCCCCCCccCCCCccccccc
Q 002305 702 KEHPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSL 779 (939)
Q Consensus 702 k~~~~~CsVC~~~E~~~N~iV~Cd--~C~vaVHq~CYGi~~ip~~~WlCd~C~~~~~~~~s~~~~v~~~~~p~~~~~C~L 779 (939)
.+++..|.||.+ +++||.|+ .|...+|..|+|+..+|.+.|+|..|.-..-.. + ....|.+
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k------------~-~~~~C~~ 74 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSS------------A-AVSFCEF 74 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCS------------B-CCEECSS
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCC------------C-CCcCcCC
Confidence 346688999995 57899999 899999999999999999999999886442211 1 1578999
Q ss_pred CCC------CCCCceeccCCch
Q 002305 780 CGG------TTGAFRKSANGQW 795 (939)
Q Consensus 780 Cp~------~gGaLK~t~~~~W 795 (939)
||. ..|+|+.+..+.|
T Consensus 75 Cp~sfC~~c~~g~l~~~~~~~~ 96 (107)
T 4gne_A 75 CPHSFCKDHEKGALVPSALEGR 96 (107)
T ss_dssp SSCEECTTTCTTSCEECTTTTC
T ss_pred CCcchhhhccCCcceecCCCCc
Confidence 996 4688888887777
No 8
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.23 E-value=8.2e-07 Score=76.13 Aligned_cols=53 Identities=26% Similarity=0.752 Sum_probs=45.0
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccccc
Q 002305 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (939)
Q Consensus 700 ~sk~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~~~~ 756 (939)
.+..++..|.||.+ .+.||.|+.|..++|..|++ +..+|.+.|+|..|.....
T Consensus 3 ~~~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 3 MAQKNEDECAVCRD----GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSCCCSBSSSSC----CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred cCCCCCCCCccCCC----CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 34567789999997 46899999999999999999 5568899999999987643
No 9
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=8.2e-07 Score=73.70 Aligned_cols=50 Identities=32% Similarity=0.816 Sum_probs=43.1
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceecccccc
Q 002305 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 753 (939)
Q Consensus 700 ~sk~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~ 753 (939)
....++..|.||.+ .+.||.|+.|..++|..|++ +..+|.+.|+|..|..
T Consensus 4 g~~~~~~~C~vC~~----~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 4 GSSGHEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCSSCCSCSSSCC----SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CcCCCCCCCccCCC----CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 44567788999997 36899999999999999999 5568899999999964
No 10
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.16 E-value=7.5e-07 Score=72.33 Aligned_cols=46 Identities=28% Similarity=0.835 Sum_probs=40.1
Q ss_pred cCcccCCCCCCCCCEEEecccCcccccccc--cCccCCCCceecccccc
Q 002305 707 SCDICRRSETILNPILICSGCKVAVHLDCY--RNAKESTGPWYCELCEE 753 (939)
Q Consensus 707 ~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CY--Gi~~ip~~~WlCd~C~~ 753 (939)
.|.||...+. .+.||.|++|...+|..|+ ++..+|.+.|+|..|..
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5999998653 5789999999999999999 46678899999999975
No 11
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.14 E-value=1.3e-06 Score=73.95 Aligned_cols=49 Identities=24% Similarity=0.716 Sum_probs=42.4
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccc
Q 002305 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (939)
Q Consensus 702 k~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~~ 754 (939)
..++..|.||.+ .+.||.|+.|..++|..|++ +..+|.+.|+|..|...
T Consensus 6 d~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 355788999986 46899999999999999999 55688999999999864
No 12
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.08 E-value=2.3e-06 Score=72.29 Aligned_cols=51 Identities=29% Similarity=0.851 Sum_probs=43.8
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEecccCcccccccccC--ccCCCCceeccccccc
Q 002305 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRN--AKESTGPWYCELCEEL 754 (939)
Q Consensus 700 ~sk~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi--~~ip~~~WlCd~C~~~ 754 (939)
...+++..|.||.+ .+.||.|+.|..++|..|++. ..+|.+.|+|..|...
T Consensus 6 ~~~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQ----GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSC----CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCC----CCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 44566789999997 478999999999999999997 4578999999999864
No 13
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.05 E-value=1.9e-06 Score=72.40 Aligned_cols=48 Identities=31% Similarity=0.883 Sum_probs=42.1
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceecccccccc
Q 002305 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELL 755 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~~~ 755 (939)
++..|.||.+ .+.||.|++|...+|..|++ +..+|.+.|+|..|....
T Consensus 4 ~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCC----CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCC----CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 5678999997 46899999999999999999 556789999999998753
No 14
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.03 E-value=4.1e-06 Score=75.95 Aligned_cols=52 Identities=25% Similarity=0.756 Sum_probs=45.1
Q ss_pred CCCCCCCCcCcccCCCCCCCCCEEEecccCcccccccc--cCccCCCCceeccccccc
Q 002305 699 DFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCY--RNAKESTGPWYCELCEEL 754 (939)
Q Consensus 699 ~~sk~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CY--Gi~~ip~~~WlCd~C~~~ 754 (939)
.+..+++..|.||.+. +.||.|+.|..++|..|+ ++..+|.+.|+|..|...
T Consensus 19 ~~~d~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CSSSSSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cccCCCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3556778899999973 579999999999999999 666789999999999875
No 15
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.02 E-value=2.9e-06 Score=72.97 Aligned_cols=47 Identities=21% Similarity=0.519 Sum_probs=40.1
Q ss_pred CCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceecccccccc
Q 002305 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELL 755 (939)
Q Consensus 705 ~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~~~ 755 (939)
...|.||.+ .+.||.|+.|...||..|+. +..+|.+.|+|..|....
T Consensus 12 ~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 467999986 46799999999999999996 456889999999998653
No 16
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=2e-06 Score=78.56 Aligned_cols=54 Identities=24% Similarity=0.587 Sum_probs=45.4
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccc
Q 002305 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (939)
Q Consensus 700 ~sk~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~~ 754 (939)
....++..|.||...+. .+.||.|++|...+|..|++ +..+|.+.|+|..|...
T Consensus 11 ~~~~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 33456678999998653 57899999999999999999 55688999999999875
No 17
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.88 E-value=1.7e-05 Score=74.22 Aligned_cols=94 Identities=22% Similarity=0.470 Sum_probs=65.5
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccC--CCCceecccccccccCCCCCCCCCCccCCCCcccccccC
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE--STGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLC 780 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~i--p~~~WlCd~C~~~~~~~~s~~~~v~~~~~p~~~~~C~LC 780 (939)
.++..|.||.+... .+.||.|+.|...+|..|.+.... +.+.|+|..|. .|.+|
T Consensus 5 ~~~~~C~~C~~~g~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~-----------------------~C~~C 60 (111)
T 2ysm_A 5 SSGANCAVCDSPGD-LLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK-----------------------VCQNC 60 (111)
T ss_dssp CCCSCBTTTCCCCC-TTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC-----------------------CCTTT
T ss_pred CCCCCCcCCCCCCC-CcCCeECCCCCCCcChHHhCCccccccccCccCCcCC-----------------------ccccc
Confidence 46788999998643 467899999999999999997654 47899999885 35566
Q ss_pred CCCCC---CceeccCCchhhhccccccccceeecCccccccccccccCCCccceeccC
Q 002305 781 GGTTG---AFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRH 835 (939)
Q Consensus 781 p~~gG---aLK~t~~~~WVHV~CALW~pEv~f~~~~l~~Vegie~I~r~kl~C~iC~~ 835 (939)
...+. .|.-..-..|.|+.|.-= .+..++.+...|..|..
T Consensus 61 ~~~~~~~~ll~Cd~C~~~yH~~Cl~p---------------pl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 61 KQSGEDSKMLVCDTCDKGYHTFCLQP---------------VMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCCSCCTTEEECSSSCCEEEGGGSSS---------------CCSSCCSSCCCCHHHHC
T ss_pred CccCCCCCeeECCCCCcHHhHHhcCC---------------ccccCCCCCcCCcCCcC
Confidence 65443 233334468899999731 12234455677776654
No 18
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.81 E-value=1.2e-05 Score=71.09 Aligned_cols=47 Identities=34% Similarity=0.795 Sum_probs=40.5
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCC-ceecccccc
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 753 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~-~WlCd~C~~ 753 (939)
-.|.||...+. .+.||.|+.|..++|..|++ +..+|.+ .|+|..|..
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37999997653 68999999999999999999 5568888 999999964
No 19
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.79 E-value=1.9e-05 Score=74.30 Aligned_cols=92 Identities=23% Similarity=0.574 Sum_probs=63.5
Q ss_pred CcCcccCCCCC-----CCCCEEEecccCcccccccccCc-----cCCCCceecccccccccCCCCCCCCCCccCCCCccc
Q 002305 706 RSCDICRRSET-----ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVA 775 (939)
Q Consensus 706 ~~CsVC~~~E~-----~~N~iV~Cd~C~vaVHq~CYGi~-----~ip~~~WlCd~C~~~~~~~~s~~~~v~~~~~p~~~~ 775 (939)
..|.+|...+. ..+.||.|++|...+|.+|++.. .++.+.|+|..|+.
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~---------------------- 63 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT---------------------- 63 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC----------------------
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc----------------------
Confidence 66999997542 24689999999999999999863 35688999999962
Q ss_pred ccccCCCCC---CCcee-ccCCchhhhccccccccceeecCccccccccccccCCCccceeccC
Q 002305 776 ECSLCGGTT---GAFRK-SANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRH 835 (939)
Q Consensus 776 ~C~LCp~~g---GaLK~-t~~~~WVHV~CALW~pEv~f~~~~l~~Vegie~I~r~kl~C~iC~~ 835 (939)
|.+|...+ +.|.. ..-..+.|+.|.. | .+..++.+...|..|..
T Consensus 64 -C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~--p-------------~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 64 -CSSCRDQGKNADNMLFCDSCDRGFHMECCD--P-------------PLTRMPKGMWICQICRP 111 (112)
T ss_dssp -BTTTCCCCCTTCCCEECTTTCCEECGGGCS--S-------------CCSSCCSSCCCCTTTSC
T ss_pred -cccccCcCCCccceEEcCCCCCeeecccCC--C-------------CCCCCCCCCeECCCCCC
Confidence 55565432 23322 2335789999962 1 13345666677877764
No 20
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.70 E-value=1.6e-05 Score=68.99 Aligned_cols=46 Identities=26% Similarity=0.834 Sum_probs=39.3
Q ss_pred cCcccCCCCCCCCCEEEecccCccccccccc--CccCCCC-ceecccccc
Q 002305 707 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 753 (939)
Q Consensus 707 ~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~-~WlCd~C~~ 753 (939)
.|.||...+. .+.||.|++|..++|..|++ +..+|.+ .|+|..|..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5778887543 67999999999999999999 5678888 999999975
No 21
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.64 E-value=2.2e-05 Score=69.46 Aligned_cols=46 Identities=26% Similarity=0.832 Sum_probs=38.1
Q ss_pred cCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCc-eecccccc
Q 002305 707 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGP-WYCELCEE 753 (939)
Q Consensus 707 ~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~-WlCd~C~~ 753 (939)
.|.||...+. .+.||.|++|..++|..|++ +..+|.+. |+|..|++
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5777776542 57899999999999999999 55678888 99999975
No 22
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.62 E-value=4.9e-05 Score=66.20 Aligned_cols=50 Identities=22% Similarity=0.734 Sum_probs=42.1
Q ss_pred CCCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceecccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEELL 755 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~--C~-vaVHq~CYGi~~ip~~~WlCd~C~~~~ 755 (939)
....+| ||...+. +.||.|++ |. -.+|..|+|+...|.+.|+|..|....
T Consensus 14 ~~~~~C-~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC--SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC--CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 345778 8998653 68999999 77 489999999999999999999998753
No 23
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.57 E-value=2.4e-05 Score=73.88 Aligned_cols=50 Identities=38% Similarity=0.882 Sum_probs=42.4
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccccc
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~~~~ 756 (939)
..|.||...+. .+.||.|+.|..++|..|++ +..+|.+.|+|..|....+
T Consensus 59 ~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 46889987653 58999999999999999999 5678899999999987643
No 24
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.55 E-value=4.3e-05 Score=72.09 Aligned_cols=74 Identities=23% Similarity=0.578 Sum_probs=53.2
Q ss_pred CcCcccCCCCC------CCCCEEEecccCcccccccccCc-----cCCCCceecccccccccCCCCCCCCCCccCCCCcc
Q 002305 706 RSCDICRRSET------ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFV 774 (939)
Q Consensus 706 ~~CsVC~~~E~------~~N~iV~Cd~C~vaVHq~CYGi~-----~ip~~~WlCd~C~~~~~~~~s~~~~v~~~~~p~~~ 774 (939)
..|.+|...+. ..+.||.|+.|...+|..|.+.. .++.+.|+|..|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---------------------- 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK---------------------- 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC----------------------
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC----------------------
Confidence 46999997541 24699999999999999999875 3568899999884
Q ss_pred cccccCCCC--CCCcee-ccCCchhhhcccc
Q 002305 775 AECSLCGGT--TGAFRK-SANGQWVHAFCAE 802 (939)
Q Consensus 775 ~~C~LCp~~--gGaLK~-t~~~~WVHV~CAL 802 (939)
.|.+|... ++.|.. -.-..|.|+.|.-
T Consensus 60 -~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 60 -SCILCGTSENDDQLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp -CCTTTTCCTTTTTEEECSSSCCEEETTTSS
T ss_pred -ccCcccccCCCCceEEcCCCCccccccccC
Confidence 25556543 233332 3335789999973
No 25
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.52 E-value=5.1e-05 Score=76.86 Aligned_cols=50 Identities=26% Similarity=0.728 Sum_probs=42.2
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~~~~ 756 (939)
+++..|.||.+ ++.||.|++|..++|..|.+ ...+|.+.|+|..|+....
T Consensus 2 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQN----GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCC----CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccccCCC----CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 35688999997 46799999999999999995 4567899999999997643
No 26
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.52 E-value=2.7e-05 Score=65.67 Aligned_cols=47 Identities=23% Similarity=0.822 Sum_probs=39.7
Q ss_pred CCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceecccccc
Q 002305 704 HPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEE 753 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~--C~-vaVHq~CYGi~~ip~~~WlCd~C~~ 753 (939)
....| ||.+.+ .+.||.|++ |. -.+|..|+|+...|.+.|+|..|..
T Consensus 9 e~~~C-~C~~~~--~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC--CCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 34667 999865 368999999 55 6899999999999999999999974
No 27
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.50 E-value=3.6e-05 Score=67.15 Aligned_cols=53 Identities=19% Similarity=0.564 Sum_probs=43.6
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC--CCceeccccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES--TGPWYCELCEELLS 756 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip--~~~WlCd~C~~~~~ 756 (939)
.+...|.||...+. +..||.|++|...+|..|.|+...+ .+.|+|..|.....
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44578999998753 4589999999999999999987654 58999999987643
No 28
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.49 E-value=4.8e-05 Score=69.27 Aligned_cols=51 Identities=25% Similarity=0.716 Sum_probs=42.4
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccC---cccccccccCccCCCCceeccc-cccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCK---VAVHLDCYRNAKESTGPWYCEL-CEELLS 756 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~---vaVHq~CYGi~~ip~~~WlCd~-C~~~~~ 756 (939)
+...+| ||...+. +.||.||+|+ --||..|.|+...|.+.|+|.. |....+
T Consensus 24 ~~~~yC-iC~~~~~--g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~~k 78 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY--GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIAN 78 (90)
T ss_dssp CCSCCS-TTTCCCS--SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHHHH
T ss_pred CCCcEE-EeCCCCC--CCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcchhh
Confidence 445778 9998653 5799999977 7899999999999999999999 986543
No 29
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.45 E-value=3.7e-05 Score=64.62 Aligned_cols=47 Identities=23% Similarity=0.810 Sum_probs=40.1
Q ss_pred CCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceecccccc
Q 002305 704 HPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEE 753 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~--C~-vaVHq~CYGi~~ip~~~WlCd~C~~ 753 (939)
+...| ||.+.+ .+.||.|++ |. -.+|..|.|+...|.+.|+|..|..
T Consensus 8 e~~yC-~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS--YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC--CCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 44667 999865 367999999 77 4999999999999999999999975
No 30
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.45 E-value=6.4e-05 Score=77.59 Aligned_cols=50 Identities=24% Similarity=0.682 Sum_probs=42.2
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceeccccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~~~~ 756 (939)
.++..|.||.+ ++.||.|++|..++|..|.+ +..+|.+.|+|..|....+
T Consensus 5 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQN----GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCC----CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC----CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 45688999997 35699999999999999995 4567899999999997643
No 31
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.44 E-value=7e-05 Score=70.38 Aligned_cols=50 Identities=24% Similarity=0.806 Sum_probs=41.5
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceecccccc
Q 002305 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 753 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~ 753 (939)
+-..|.||.+.....+.||.|+.|..++|..|+. +..+|++.|+|..|+.
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3457999997644467899999999999999994 5678899999999963
No 32
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.42 E-value=9e-05 Score=67.59 Aligned_cols=51 Identities=22% Similarity=0.722 Sum_probs=42.3
Q ss_pred CCCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceeccccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEELLS 756 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~--C~-vaVHq~CYGi~~ip~~~WlCd~C~~~~~ 756 (939)
....+| ||.+.+. +.||.|++ |. --||..|.|+...|.+.|+|..|.....
T Consensus 34 ~e~~yC-iC~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC--CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 455777 9998653 68999999 66 5799999999999999999999987543
No 33
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.34 E-value=6.2e-05 Score=63.93 Aligned_cols=49 Identities=24% Similarity=0.750 Sum_probs=40.3
Q ss_pred CCCCcCcccCCCCCCCCCEEEecc--cC-cccccccccCccCCCCceeccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEEL 754 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~--C~-vaVHq~CYGi~~ip~~~WlCd~C~~~ 754 (939)
+....| +|.+.+. +.||.|++ |. --+|..|.|+...|.+.|+|..|...
T Consensus 9 ~e~~yC-~C~~~~~--g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY--GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp -CCEET-TTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCCcEE-ECCCCCC--CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 345677 9998653 57999999 54 79999999999999999999999754
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.19 E-value=0.00012 Score=74.70 Aligned_cols=46 Identities=28% Similarity=0.843 Sum_probs=40.2
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccc--cCccCCCCceeccccccc
Q 002305 705 PRSCDICRRSETILNPILICSGCKVAVHLDCY--RNAKESTGPWYCELCEEL 754 (939)
Q Consensus 705 ~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CY--Gi~~ip~~~WlCd~C~~~ 754 (939)
+..|.||.+ ++.+|.|++|..++|..|. ++..+|.|.|+|..|...
T Consensus 2 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCC----CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCC----CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 467999997 4579999999999999999 566788999999999875
No 35
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.16 E-value=0.00033 Score=59.25 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=44.0
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceeccccccc
Q 002305 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (939)
Q Consensus 702 k~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip---~~~WlCd~C~~~ 754 (939)
.++..+|.+|.........||.|+.|..=+|..|.|+...+ ...|+|..|...
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45678899999876445789999999999999999998653 368999999865
No 36
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.11 E-value=0.00029 Score=65.76 Aligned_cols=49 Identities=24% Similarity=0.664 Sum_probs=40.8
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCCceecccccccc
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELL 755 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~~WlCd~C~~~~ 755 (939)
..|.||..... .+.||.|+.|..++|..|+. ...+|.+.|+|..|..-.
T Consensus 55 ~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 55 KVCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred CcccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 46888887643 46899999999999999998 446788999999998753
No 37
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.10 E-value=0.00021 Score=74.87 Aligned_cols=47 Identities=26% Similarity=0.800 Sum_probs=36.4
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc--CccCCCC-ceecccccc
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 753 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG--i~~ip~~-~WlCd~C~~ 753 (939)
..|.+|...+. .+.||.|++|..++|..|.+ ...+|.+ .|+|..|..
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 47999988653 67899999999999999999 4567888 999999975
No 38
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.05 E-value=0.00055 Score=63.03 Aligned_cols=47 Identities=26% Similarity=0.676 Sum_probs=37.5
Q ss_pred CcCcccCCCCCCCCCEEEecccCcccccccccCccCC-CCceeccccccc
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES-TGPWYCELCEEL 754 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip-~~~WlCd~C~~~ 754 (939)
..| ||...+. .+.||.|+.|...+|..|+|++... .+.|+|..|...
T Consensus 29 vrC-iC~~~~~-~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHD-DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSC-SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccC-CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 456 9987653 5789999999999999999986422 357999999753
No 39
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.88 E-value=0.00037 Score=60.53 Aligned_cols=49 Identities=22% Similarity=0.649 Sum_probs=40.8
Q ss_pred CCCcCcccCCCCCCCCCEEEecccC---cccccccccCccCCCCceecccccccc
Q 002305 704 HPRSCDICRRSETILNPILICSGCK---VAVHLDCYRNAKESTGPWYCELCEELL 755 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~C~---vaVHq~CYGi~~ip~~~WlCd~C~~~~ 755 (939)
...+| +|...+ .+.||.||+|+ .-||..|.|+...+.+.|+|..|....
T Consensus 5 ~~~yC-~C~~~~--~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS--YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC--CSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC--CCCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 34666 698865 35899999985 789999999999899999999998653
No 40
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.79 E-value=0.00085 Score=58.21 Aligned_cols=52 Identities=25% Similarity=0.500 Sum_probs=41.6
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccC--CCCceecccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE--STGPWYCELCEELL 755 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~i--p~~~WlCd~C~~~~ 755 (939)
+....| ||...+..+..||.|+.|..=+|..|.|+... ....|+|..|....
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 345778 89987543457999999999999999998853 35789999998753
No 41
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.76 E-value=0.00099 Score=57.50 Aligned_cols=50 Identities=22% Similarity=0.627 Sum_probs=40.5
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccC-CCCceeccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE-STGPWYCELCEEL 754 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~i-p~~~WlCd~C~~~ 754 (939)
.+...| ||...+. +..||.|+.|..=+|..|.|+... ..+.|+|..|...
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 345778 9998654 567999999999999999998863 2578999999753
No 42
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.65 E-value=0.0011 Score=58.40 Aligned_cols=52 Identities=25% Similarity=0.638 Sum_probs=42.2
Q ss_pred CCCCcCcccCCCCCCCCCEEEec--ccCcccccccccCccCC-------CCceeccccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNAKES-------TGPWYCELCEELLS 756 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd--~C~vaVHq~CYGi~~ip-------~~~WlCd~C~~~~~ 756 (939)
+....| ||...+. ...||.|+ .|..-+|..|+|+...+ ...|+|..|.....
T Consensus 14 ~~~~~C-iC~~~~~-~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRC-VCGNSLE-TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCC-SSCCCCC-CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEe-ECCCcCC-CCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 345778 8998743 46899999 99999999999998654 36899999987643
No 43
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.59 E-value=0.00061 Score=58.36 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=40.9
Q ss_pred CCCCcCcccCCCCCCCCCEEEec-ccCcccccccccCcc--------CCCCceeccccc
Q 002305 703 EHPRSCDICRRSETILNPILICS-GCKVAVHLDCYRNAK--------ESTGPWYCELCE 752 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd-~C~vaVHq~CYGi~~--------ip~~~WlCd~C~ 752 (939)
+....|.+|.........+|.|+ .|..=||..|-|+.. .+.+.|+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 34577999999765567899999 999999999999975 367799999996
No 44
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.32 E-value=0.0014 Score=57.29 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=41.2
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC-------CCceeccccccccc
Q 002305 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES-------TGPWYCELCEELLS 756 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip-------~~~WlCd~C~~~~~ 756 (939)
+..+| +|...+. +..||.|+.|..=+|..|.|+...+ ...|+|..|.....
T Consensus 15 ~~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 15 NALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TCCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 34667 9998764 4589999999999999999987542 57899999987643
No 45
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.30 E-value=0.0015 Score=57.59 Aligned_cols=52 Identities=23% Similarity=0.529 Sum_probs=41.9
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceecccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEELL 755 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip---~~~WlCd~C~~~~ 755 (939)
.....| +|.........||.|+.|..=+|..|.|+...+ ...|+|..|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344666 999876446789999999999999999987643 3689999998764
No 46
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=95.99 E-value=0.0022 Score=52.26 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=37.9
Q ss_pred cCcccCCCCCCCCCEEEec-ccCcccccccccCccCC--CCceeccccc
Q 002305 707 SCDICRRSETILNPILICS-GCKVAVHLDCYRNAKES--TGPWYCELCE 752 (939)
Q Consensus 707 ~CsVC~~~E~~~N~iV~Cd-~C~vaVHq~CYGi~~ip--~~~WlCd~C~ 752 (939)
.|.+|...++.+..+|.|+ .|..=+|..|.|+...+ ...|+|..|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4889988765567899999 89999999999997543 4789999984
No 47
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=95.95 E-value=0.0029 Score=58.91 Aligned_cols=51 Identities=24% Similarity=0.638 Sum_probs=42.7
Q ss_pred CcCcccCCCCCCCCCEEEec-ccCcccccccccCcc--------CCCCceeccccccccc
Q 002305 706 RSCDICRRSETILNPILICS-GCKVAVHLDCYRNAK--------ESTGPWYCELCEELLS 756 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd-~C~vaVHq~CYGi~~--------ip~~~WlCd~C~~~~~ 756 (939)
..|.+|.......+.++.|+ .|.-=||..|-|+.. .+.+.|+|..|.....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 57999999754456899998 999999999999885 3668999999987643
No 48
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=95.85 E-value=0.0013 Score=65.67 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=42.0
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccC---CCCceeccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE---STGPWYCELCEEL 754 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~i---p~~~WlCd~C~~~ 754 (939)
++...| +|.........+|.|+.|..-+|..|.|+... ..+.|+|..|...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456789 99987544678999999999999999998753 3678999999875
No 49
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=95.83 E-value=0.0058 Score=52.44 Aligned_cols=49 Identities=29% Similarity=0.699 Sum_probs=38.0
Q ss_pred CCCcCcccCCCCCCCCCEEEecc--cCcccccccccCccCC------CCceeccccccc
Q 002305 704 HPRSCDICRRSETILNPILICSG--CKVAVHLDCYRNAKES------TGPWYCELCEEL 754 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~--C~vaVHq~CYGi~~ip------~~~WlCd~C~~~ 754 (939)
....| ||+..+. .+.||.|++ |..=+|..|+|+...+ ...|+|..|+..
T Consensus 9 ~~v~C-~C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 9 AKVRC-ICSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CEECC-TTCCCSC-CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCEEe-ECCCCcC-CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 34566 8987543 468999995 9999999999997543 246999999864
No 50
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=95.56 E-value=0.0067 Score=49.39 Aligned_cols=44 Identities=23% Similarity=0.650 Sum_probs=36.6
Q ss_pred cccCCCCCCCCCEEEecccCcccccccccCccCC-CCceecccccc
Q 002305 709 DICRRSETILNPILICSGCKVAVHLDCYRNAKES-TGPWYCELCEE 753 (939)
Q Consensus 709 sVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip-~~~WlCd~C~~ 753 (939)
.||...+. +..||.|+.|..=+|..|.|+...+ .+.|+|..|..
T Consensus 7 C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 48987654 5699999999999999999988643 57899999964
No 51
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=94.85 E-value=0.0074 Score=52.71 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=39.4
Q ss_pred CcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceecccccccc
Q 002305 708 CDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEELL 755 (939)
Q Consensus 708 CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip---~~~WlCd~C~~~~ 755 (939)
-+||...+..+..||.|+.|..=+|..|.|+...+ ...|+|..|....
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 44998765445789999999999999999998764 2679999998763
No 52
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=94.44 E-value=0.013 Score=57.42 Aligned_cols=49 Identities=20% Similarity=0.609 Sum_probs=40.7
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCcccccccccCc-------c--CCCCceeccccccc
Q 002305 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA-------K--ESTGPWYCELCEEL 754 (939)
Q Consensus 702 k~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~-------~--ip~~~WlCd~C~~~ 754 (939)
..++..|.||.+ ++.|+.|+.|-.++|..|...+ . .+.++|.|..|...
T Consensus 60 Dg~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345789999998 6789999999999999999632 1 37899999999753
No 53
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=92.85 E-value=0.025 Score=54.70 Aligned_cols=48 Identities=21% Similarity=0.580 Sum_probs=39.6
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCc-------cC--CCCceeccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA-------KE--STGPWYCELCEEL 754 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~-------~i--p~~~WlCd~C~~~ 754 (939)
.++..|.||.+ +++++.|+.|-.++|..|.... .+ +.++|.|-.|...
T Consensus 55 g~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 35578999997 6889999999999999998632 33 7899999999654
No 54
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=91.89 E-value=0.034 Score=64.49 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=39.6
Q ss_pred CcCcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceeccccccc
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip---~~~WlCd~C~~~ 754 (939)
..| +|...++.+..||.|+.|..=+|..|.|+...+ .+.|+|..|...
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 455 999865446789999999999999999998754 267999999865
No 55
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.79 E-value=0.052 Score=55.29 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=37.8
Q ss_pred CcCcccCCCCCCC---CCEEEecccCcccccccccCccC--------C-CCceeccccccc
Q 002305 706 RSCDICRRSETIL---NPILICSGCKVAVHLDCYRNAKE--------S-TGPWYCELCEEL 754 (939)
Q Consensus 706 ~~CsVC~~~E~~~---N~iV~Cd~C~vaVHq~CYGi~~i--------p-~~~WlCd~C~~~ 754 (939)
..|.||......+ ..||.|+.|..=||..|-|+... | ...|+|..|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 5699999865422 35999999999999999998641 2 236888888764
No 56
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.59 E-value=0.08 Score=46.74 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.+..||+-|-++|.|+|.|||.++|+|+++++.-|
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL 37 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAML 37 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 36788999999999999999999999999999988
No 57
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=90.58 E-value=0.096 Score=47.31 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
+..||+-|-++|.|+|.|||.++|+|+++++.-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 5778999999999999999999999999999888
No 58
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.34 E-value=0.3 Score=42.84 Aligned_cols=32 Identities=22% Similarity=0.491 Sum_probs=27.8
Q ss_pred CccceeccCC--CCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...| +|++. .|.+|+|....|..+||..|.-.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi 49 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVIL 49 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEcc
Confidence 4677 89985 79999999889999999999843
No 59
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=86.30 E-value=0.26 Score=42.09 Aligned_cols=30 Identities=30% Similarity=0.629 Sum_probs=25.2
Q ss_pred CccceeccCC--CCeeeecCCcCcccccchhhh
Q 002305 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCA 857 (939)
Q Consensus 827 kl~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA 857 (939)
+.+| +|+.. .|.+|+|....|..+||..|.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTS
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhC
Confidence 3556 79875 789999986679999999997
No 60
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=86.28 E-value=0.088 Score=60.39 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=40.0
Q ss_pred CcCcccCCCCCCCCCEEEecccCcccccccccCccCC---CCceeccccccc
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip---~~~WlCd~C~~~ 754 (939)
...++|......+..||.|+.|..=+|..|.|+...+ .+.|+|..|...
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 3466998865446789999999999999999998643 367999999765
No 61
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.02 E-value=0.39 Score=41.72 Aligned_cols=29 Identities=34% Similarity=0.844 Sum_probs=24.7
Q ss_pred CccceeccCC--CCeeeecCCcCcccccchhhhh
Q 002305 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCAR 858 (939)
Q Consensus 827 kl~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~ 858 (939)
...| +|++. .+.+|+|. .|..+||..|.-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEc
Confidence 4667 89987 46899999 899999999984
No 62
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.86 E-value=0.31 Score=40.83 Aligned_cols=31 Identities=26% Similarity=0.657 Sum_probs=26.5
Q ss_pred CccceeccCC---CCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHK---HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...|.+|++. .+.+|+|. .|..+||..|+-.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl 39 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCD--LCEMWFHGKCVKI 39 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTC
T ss_pred CCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCc
Confidence 4678899986 47899999 8999999999844
No 63
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.64 E-value=0.31 Score=43.73 Aligned_cols=50 Identities=22% Similarity=0.681 Sum_probs=39.5
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccC---c-----------cCCCCceeccccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRN---A-----------KESTGPWYCELCEEL 754 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi---~-----------~ip~~~WlCd~C~~~ 754 (939)
.+|..|.||.... .+.++-|.-|+..+|..|..- . -.++..|.|..|.+.
T Consensus 13 ~~D~~C~VC~~~t--~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVWT--AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCCC--SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCcccCcccccc--ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 3678899999755 477889999999999999731 1 124678999999876
No 64
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.50 E-value=0.73 Score=41.91 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=26.2
Q ss_pred CccceeccCC-CCeeeecCCcCcc-cccchhhhhc
Q 002305 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~-~GA~IqC~~~~C~-~~FHv~CA~~ 859 (939)
...| +|++. .|.+|+|...+|. .+||..|.-.
T Consensus 36 ~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl 69 (91)
T 1weu_A 36 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL 69 (91)
T ss_dssp CBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTC
T ss_pred CcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCc
Confidence 4667 99984 6899999966698 7999999853
No 65
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.12 E-value=0.68 Score=40.54 Aligned_cols=29 Identities=34% Similarity=0.844 Sum_probs=24.7
Q ss_pred ccceeccCC---CCeeeecCCcCcccccchhhhhc
Q 002305 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 828 l~C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
..| +|++. .+.+|+|. .|..+||..|.-.
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl 44 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGI 44 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTC
T ss_pred cEE-EcCCccCCCCceEEcC--CCCCcEEeeecCc
Confidence 556 99986 58999999 8999999999843
No 66
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=81.96 E-value=0.84 Score=39.52 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=26.2
Q ss_pred CccceeccCC-CCeeeecCCcCcc-cccchhhhhc
Q 002305 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~-~GA~IqC~~~~C~-~~FHv~CA~~ 859 (939)
...| +|++. .|.+|+|...+|. .+||..|.-.
T Consensus 16 ~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl 49 (71)
T 1wen_A 16 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL 49 (71)
T ss_dssp CCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTC
T ss_pred CCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCc
Confidence 4677 89984 6899999966698 7999999953
No 67
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=81.95 E-value=0.65 Score=39.87 Aligned_cols=31 Identities=32% Similarity=0.750 Sum_probs=25.5
Q ss_pred CccceeccCC--CCeeeecCCcCcccccchhhhhcc
Q 002305 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCARSA 860 (939)
Q Consensus 827 kl~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~a 860 (939)
...| +|++. ++.+|+|. .|..+||..|.-..
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIR 51 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCC
T ss_pred ceEe-ECCCcCCCCCEEECC--CCCccccccccCcC
Confidence 4677 99986 45799999 79999999998543
No 68
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=81.10 E-value=0.58 Score=39.06 Aligned_cols=32 Identities=28% Similarity=0.682 Sum_probs=25.8
Q ss_pred CccceeccCC-CCeeeecCCcCcc-cccchhhhhc
Q 002305 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~-~GA~IqC~~~~C~-~~FHv~CA~~ 859 (939)
...| +|++. .|.+|+|...+|. .+||..|.-.
T Consensus 9 ~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl 42 (59)
T 3c6w_A 9 PTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDL 42 (59)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred CcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCc
Confidence 3556 89984 6899999966698 6999999863
No 69
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=80.81 E-value=0.92 Score=41.28 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhccc--cccccchhHHHHHHh
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWL 271 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~--~~~~~~~~~k~~~wl 271 (939)
..|+..|.+.| ++++|||..+|+|+.++--.|+. ..++++...+|.+.|
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~~~~~Vs~~tr~rV~~al 60 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEIL 60 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTTHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 45777777777 99999999999999999999985 579999999998883
No 70
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.23 E-value=0.68 Score=42.37 Aligned_cols=46 Identities=24% Similarity=0.498 Sum_probs=32.5
Q ss_pred ccceeccCC--CCeeeecCCcCcccccchhhhhccCceEEEeeCCCceeeeeEcCCCCch
Q 002305 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 885 (939)
Q Consensus 828 l~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~aG~~~~~k~~~g~~~~~iyC~kHs~~ 885 (939)
.+| +|+.. .|.+|+|. .|..+||..|.-...- .... ..||+.-.+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd--~C~~w~H~~C~~~~~~-----~~p~----~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCD--KCSVWQHIDCMGIDRQ-----HIPD----TYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBT--TTCBEEETTTTTCCTT-----SCCS----SBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcC--CCCCcCcCcCCCCCcc-----CCCC----CEECCCCcCC
Confidence 557 78875 68999999 8999999999844211 1111 3589887653
No 71
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.91 E-value=0.64 Score=40.00 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=25.4
Q ss_pred CccceeccCC--CC-eeeecCCcCcccccchhhhhcc
Q 002305 827 IDVCCICRHK--HG-ICIKCNYGNCQTTFHPTCARSA 860 (939)
Q Consensus 827 kl~C~iC~~~--~G-A~IqC~~~~C~~~FHv~CA~~a 860 (939)
...| +|++. .| .+|+|. .|..+||..|.-..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~ 49 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGIN 49 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTCC
T ss_pred ceEe-eCCCccCCCCcEEECC--CCCCccCCeeeccC
Confidence 4678 69986 35 699999 89999999998543
No 72
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=79.48 E-value=0.71 Score=45.73 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=39.4
Q ss_pred CcCcccCCC-CCCCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002305 706 RSCDICRRS-ETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (939)
Q Consensus 706 ~~CsVC~~~-E~~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~ 754 (939)
..|.+|... ....|.-..|..|...|=+.| |+....+..|+|..|...
T Consensus 69 ~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C-~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFVCKSC-SHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEECGGG-EECCSSSSSCEEHHHHHH
T ss_pred ccchhhcCccccccCCCCcCCCCCchhhccc-ccccCCCCcEeeHHHHHH
Confidence 569999986 346788899999999999999 444445788999999875
No 73
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.33 E-value=0.71 Score=39.83 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=25.9
Q ss_pred ccceeccCC--CCeeeecCCcCcccccchhhhhcc
Q 002305 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARSA 860 (939)
Q Consensus 828 l~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~a 860 (939)
..|.+|++. .+.+|+|. .|..+||..|.-..
T Consensus 19 ~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~ 51 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIM 51 (75)
T ss_dssp ECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCS
T ss_pred cCCCCCCCCCCCCCEEEcC--CCCcccccccCCCC
Confidence 679999986 34799999 89999999998543
No 74
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.26 E-value=0.85 Score=42.62 Aligned_cols=31 Identities=26% Similarity=0.711 Sum_probs=27.3
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhh
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCAR 858 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~ 858 (939)
...|.+|+. +|-+|.|....|..+||..|.-
T Consensus 15 ~~~C~~C~~-~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 15 EDYCFQCGD-GGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCTTTCC-CSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCcCCC-CCcEeEECCCCCCcccccccCc
Confidence 477999995 5999999988899999999985
No 75
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=78.62 E-value=0.77 Score=38.12 Aligned_cols=30 Identities=30% Similarity=0.924 Sum_probs=26.7
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...|.+|++. |.+|.|. .|...||..|...
T Consensus 5 ~~~C~vC~~~-g~ll~Cd--~C~~~fH~~Cl~p 34 (60)
T 2puy_A 5 EDFCSVCRKS-GQLLMCD--TCSRVYHLDCLDP 34 (60)
T ss_dssp CSSCTTTCCC-SSCEECS--SSSCEECGGGSSS
T ss_pred CCCCcCCCCC-CcEEEcC--CCCcCEECCcCCC
Confidence 3679999986 8999999 9999999999974
No 76
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=78.22 E-value=2 Score=32.77 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=25.3
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 224 ~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
.+.+|+++| .++.+||.++|||..++...|.
T Consensus 13 ~i~~l~~~g-~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 13 QISRLLEKG-HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHHHHHHTT-CCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHH
Confidence 344567888 8999999999999998876664
No 77
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=77.77 E-value=1.1 Score=52.36 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=31.4
Q ss_pred CCCEEEecccCcccccccccCccCC---CCceeccccccc
Q 002305 718 LNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (939)
Q Consensus 718 ~N~iV~Cd~C~vaVHq~CYGi~~ip---~~~WlCd~C~~~ 754 (939)
+..+|.||.|.-=+|..|.|+.... .+.|+|..|...
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 3579999999999999999998643 367999999864
No 78
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.69 E-value=1.2 Score=36.58 Aligned_cols=30 Identities=30% Similarity=0.924 Sum_probs=26.8
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...|.+|+.. |.+|.|. .|...||..|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd--~C~~~~H~~Cl~p 38 (56)
T 2yql_A 9 EDFCSVCRKS-GQLLMCD--TCSRVYHLDCLDP 38 (56)
T ss_dssp CCSCSSSCCS-SCCEECS--SSSCEECSSSSSS
T ss_pred CCCCccCCCC-CeEEEcC--CCCcceECccCCC
Confidence 4779999986 8999999 9999999999874
No 79
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=77.12 E-value=1.1 Score=37.86 Aligned_cols=30 Identities=37% Similarity=0.909 Sum_probs=26.7
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...|.+|+.. |.+|.|. .|...||..|...
T Consensus 8 ~~~C~vC~~~-g~ll~CD--~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 8 EDECAVCRDG-GELICCD--GCPRAFHLACLSP 37 (66)
T ss_dssp CCSBSSSSCC-SSCEECS--SCCCEECTTTSSS
T ss_pred CCCCccCCCC-CCEEEcC--CCChhhcccccCC
Confidence 4789999985 8999999 8999999999874
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.68 E-value=0.84 Score=39.01 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=33.5
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhhccCceEEEeeCCCceeeeeEcCCCCc
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 884 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 884 (939)
...|.+|+.. |.+|.|. .|...||..|....-..+ ..+.+ ||+.-+.
T Consensus 12 ~~~C~vC~~~-~~ll~Cd--~C~~~~H~~Cl~P~l~~~----P~g~W----~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGDG-TDVLRCT--HCAAAFHWRCHFPAGTSR----PGTGL----RCRSCSG 58 (66)
T ss_dssp TCCCTTTSCC-TTCEECS--SSCCEECHHHHCTTTCCC----CSSSC----CCTTTTT
T ss_pred CCCcCCCCCC-CeEEECC--CCCCceecccCCCccCcC----CCCCE----ECccccC
Confidence 4679999975 8899999 899999999985432211 12334 7877653
No 81
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=76.67 E-value=1 Score=41.73 Aligned_cols=30 Identities=33% Similarity=0.745 Sum_probs=26.0
Q ss_pred ccceeccCC---CCeeeecCCcCcccccchhhhh
Q 002305 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (939)
Q Consensus 828 l~C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~ 858 (939)
..|.+|++. .|-+|+|. ..|..+||..|.-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVg 36 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECTG 36 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTT
T ss_pred CCCCCCCCccCCCCCEEEec-CCcccccccccCC
Confidence 579999997 67899998 5899999999983
No 82
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=76.48 E-value=0.98 Score=37.74 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=25.5
Q ss_pred CccceeccCC-CCeeeecCCcCcc-cccchhhhhc
Q 002305 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~-~GA~IqC~~~~C~-~~FHv~CA~~ 859 (939)
...| +|++. .|.+|.|...+|. .+||..|.-.
T Consensus 10 ~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl 43 (60)
T 2vnf_A 10 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL 43 (60)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred CCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCC
Confidence 3556 89984 6899999955588 7999999963
No 83
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=76.22 E-value=2.6 Score=34.12 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~ 272 (939)
+|+..||++..+-.++..++|..+|||+.+|..-.......+..-.+|.++|.
T Consensus 1 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~la~~l~ 53 (69)
T 1r69_A 1 SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALG 53 (69)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTTHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchHHHHHHHHHC
Confidence 36778999999999999999999999999998877643333333455555553
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=75.83 E-value=0.98 Score=37.77 Aligned_cols=31 Identities=29% Similarity=0.815 Sum_probs=27.3
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhhcc
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 860 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~a 860 (939)
...|.+|++. |.+|.|. .|..+||..|....
T Consensus 11 ~~~C~vC~~~-g~ll~CD--~C~~~fH~~Cl~p~ 41 (61)
T 2l5u_A 11 QDYCEVCQQG-GEIILCD--TCPRAYHMVCLDPD 41 (61)
T ss_dssp CSSCTTTSCC-SSEEECS--SSSCEEEHHHHCTT
T ss_pred CCCCccCCCC-CcEEECC--CCChhhhhhccCCC
Confidence 4789999985 8999999 89999999998763
No 85
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=75.79 E-value=2.4 Score=35.21 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=43.5
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcccc--ccccchhHHHHHHhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADG--TFASDLQCKLVKWLS 272 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~--~~~~~~~~k~~~wl~ 272 (939)
..|+..|+++..+-..+..++|..+|||+.+|..-.... ..+.+.-.+|.+.|.
T Consensus 6 ~~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~ 61 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcC
Confidence 468889999999999999999999999999998877633 355555667777664
No 86
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=75.23 E-value=1.5 Score=37.15 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=40.6
Q ss_pred cccccchhhhccChhhhhhhccc-c---ccccchhHHHHHHhhhcccccccc
Q 002305 234 VNVKDIASDIGISPDLLKTTLAD-G---TFASDLQCKLVKWLSNHAYLGGLL 281 (939)
Q Consensus 234 v~~~d~~~~~gis~~~l~~~~~~-~---~~~~~~~~k~~~wl~~~~~~~~~~ 281 (939)
++++|||..+|+|+-++--.|+. . .++++...+|.+.++..-|.+...
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~ 52 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAV 52 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC--
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHH
Confidence 46899999999999999999984 3 689999999999999888866544
No 87
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=74.95 E-value=1.1 Score=36.17 Aligned_cols=28 Identities=36% Similarity=0.832 Sum_probs=23.0
Q ss_pred eeccCC--CCeeeecCCcCcccccchhhhhcc
Q 002305 831 CICRHK--HGICIKCNYGNCQTTFHPTCARSA 860 (939)
Q Consensus 831 ~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~a 860 (939)
++|++. ++.+|+|. .|..+||..|.-..
T Consensus 7 C~C~~~~~~~~MI~Cd--~C~~W~H~~Cvgi~ 36 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECN--ECHTWIHLSCAKIR 36 (52)
T ss_dssp STTCCBCTTCCEEECT--TTCCEEETTTTTCC
T ss_pred EEeCCcCCCCCEEEcC--CCCccccccccCCC
Confidence 478875 46999999 79999999998543
No 88
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.87 E-value=1.2 Score=36.08 Aligned_cols=29 Identities=21% Similarity=0.550 Sum_probs=23.9
Q ss_pred cceeccCC---CCeeeecCCcCcccccchhhhh
Q 002305 829 VCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (939)
Q Consensus 829 ~C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~ 858 (939)
.|.+|+++ .+.+|+|.. .|..+||..|+-
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTT
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccC
Confidence 47788886 356999996 799999999983
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.31 E-value=1.2 Score=35.57 Aligned_cols=29 Identities=38% Similarity=0.919 Sum_probs=24.6
Q ss_pred cceeccCC--CCeeeecCCcCcccccchhhhhc
Q 002305 829 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 829 ~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
.|.+|++. .+.+|.|. .|...||..|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCC
Confidence 58899975 35799999 8999999999964
No 90
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=73.47 E-value=3.3 Score=33.66 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl 271 (939)
.|+..||++..+-.++..|+|..+|||+.+|..-.......++.-.+|.+.|
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~i~~~l 54 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMAL 54 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 3678899999998999999999999999999887764444455545555544
No 91
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=73.45 E-value=0.95 Score=44.87 Aligned_cols=29 Identities=31% Similarity=0.791 Sum_probs=25.0
Q ss_pred CccceeccCC---CCeeeecCCcCcccccchhhhh
Q 002305 827 IDVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (939)
Q Consensus 827 kl~C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~ 858 (939)
...| +|++. .|.+|+|. .|..+||..|.-
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVG 39 (174)
T ss_dssp CEET-TTTEECCTTSCEEECT--TTCCEEEHHHHT
T ss_pred CcEe-eCCCCCCCCCCEeECC--CCCchhChhhcC
Confidence 4678 99986 57799999 899999999983
No 92
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=73.37 E-value=1.5 Score=36.86 Aligned_cols=32 Identities=25% Similarity=0.654 Sum_probs=26.0
Q ss_pred cccccccccc-cCceeeCCCCCCC-cccchhhhhh
Q 002305 56 KLVCNICRVK-CGACVRCSHGTCR-TSFHPICARE 88 (939)
Q Consensus 56 ~LkC~iC~~k-~GAcIqCs~~~C~-~sFHvtCA~~ 88 (939)
.+.| +|++. .|-.|+|....|. .+||..|.-.
T Consensus 11 ~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl 44 (62)
T 2g6q_A 11 PTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSL 44 (62)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred CcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCc
Confidence 4677 89974 6889999966688 9999999864
No 93
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=73.37 E-value=1.3 Score=40.14 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=25.0
Q ss_pred CccceeccCC-CCeeeecCCcCcc-cccchhhhh
Q 002305 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCAR 858 (939)
Q Consensus 827 kl~C~iC~~~-~GA~IqC~~~~C~-~~FHv~CA~ 858 (939)
...| +|++. .|.+|.|...+|. .+||..|.-
T Consensus 26 ~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg 58 (90)
T 2jmi_A 26 EVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG 58 (90)
T ss_dssp SCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS
T ss_pred CcEE-EeCCCCCCCEEEecCCCCccccCcCccCC
Confidence 4667 99984 7889999955566 799999984
No 94
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=73.13 E-value=1 Score=41.80 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=28.3
Q ss_pred CCCEEEecccCcccccccccCcc------CCCCceeccccccc
Q 002305 718 LNPILICSGCKVAVHLDCYRNAK------ESTGPWYCELCEEL 754 (939)
Q Consensus 718 ~N~iV~Cd~C~vaVHq~CYGi~~------ip~~~WlCd~C~~~ 754 (939)
...|+.|+.|.-.||..|.++.. ...+.|.|..|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 45699999999999999998653 12346999999764
No 95
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=72.37 E-value=1.6 Score=36.51 Aligned_cols=30 Identities=23% Similarity=0.903 Sum_probs=26.3
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...|.+|+.. |.+|.|. .|...||..|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd--~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 9 MEFCRVCKDG-GELLCCD--TCPSSYHIHCLNP 38 (61)
T ss_dssp CSSCTTTCCC-SSCBCCS--SSCCCBCSSSSSS
T ss_pred CCcCCCCCCC-CCEEEcC--CCCHHHcccccCC
Confidence 4779999975 8999999 8999999999874
No 96
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=72.29 E-value=2.7 Score=33.80 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhccc-cccccchhHHHHHHh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWL 271 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~-~~~~~~~~~k~~~wl 271 (939)
.|+..||++..+-.++..++|..+|||+.+|..-... .....+.-.+|.+.|
T Consensus 5 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l 57 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKAL 57 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4778899999988899999999999999998877652 333344445565554
No 97
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=70.89 E-value=3.1 Score=31.03 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.-..+..|..+| .++.+||..+|||..++...+
T Consensus 10 ~~~~i~~~~~~g-~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 10 ERAQLDVMKLLN-VSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 333344566777 699999999999998876544
No 98
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=70.24 E-value=3.1 Score=34.31 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.|+..||++..+-.++..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 5 ~~~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 58 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQ 58 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 478889999998889999999999999999887775 23334444556655553
No 99
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=70.02 E-value=3.8 Score=33.52 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=41.3
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
..|+..||++...-.++..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 12 ~~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~ 66 (74)
T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALD 66 (74)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 3578889999999999999999999999999987765 33344455556665553
No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=69.99 E-value=1.8 Score=36.77 Aligned_cols=30 Identities=33% Similarity=0.723 Sum_probs=25.3
Q ss_pred ccceeccCC---CCeeeecCCcCcccccchhhhh
Q 002305 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (939)
Q Consensus 828 l~C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~ 858 (939)
..|.+|+++ ...+|+|.. .|..+||..|.-
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvg 41 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEA-SCQKWFHRICTG 41 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHT
T ss_pred CcCccCCCccCCCCCeEeccc-CccccCchhccC
Confidence 679999996 346899994 899999999973
No 101
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=69.81 E-value=3.1 Score=33.23 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=37.3
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 224 ~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.||++...-.++..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 54 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLN 54 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 36788888889999999999999999988776 33444555566666664
No 102
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=69.68 E-value=3.5 Score=36.01 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=44.3
Q ss_pred CCcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 216 SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 216 ~~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.+...++-.|+.+++.-.++..|+|..+|||+.+|..-+. ....+++.-.+|.+.|.
T Consensus 4 ~~~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~ 61 (94)
T 2ict_A 4 ANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIG 61 (94)
T ss_dssp TTCCCHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTC
T ss_pred CCCCChhHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 3455688899999999899999999999999999987776 33455566667766554
No 103
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=69.29 E-value=3.4 Score=36.75 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHhh
Q 002305 206 DRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (939)
Q Consensus 206 ~~~~~~~~~~~~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~ 272 (939)
++.++.+++|.-+.+ -||+|..+-..+..++|..+|||+.+|..-......+.+.-.||-+.|.
T Consensus 13 ~~~~~~~~~M~i~~~---rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~ 76 (88)
T 3t76_A 13 GRENLYFQGMRVSYN---KLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLN 76 (88)
T ss_dssp -CCCCSCCCEEEECH---HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CccchhhccccHHHH---HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 456666777754433 5677777777899999999999999998877654456666777777775
No 104
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=68.60 E-value=2.5 Score=35.38 Aligned_cols=31 Identities=26% Similarity=0.778 Sum_probs=26.9
Q ss_pred CccceeccCC----CCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHK----HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~----~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...|.+|+.. .+.+|.|. .|...||..|...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCC
Confidence 4789999975 38999999 9999999999865
No 105
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=68.12 E-value=3.2 Score=34.83 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhccc-cccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~-~~~~~~~~~k~~~wl~ 272 (939)
+|+..||++..+-..+.+++|..+|||..+|..-... ...+.+.-.+|.+.|.
T Consensus 2 ~~~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~ 55 (77)
T 2k9q_A 2 ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKG 55 (77)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 4677899999999999999999999999998776652 2334445556655553
No 106
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=67.94 E-value=4.3 Score=34.57 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=44.4
Q ss_pred CCcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 216 SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 216 ~~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.+..+|+..||++..+-..+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 8 ~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 65 (88)
T 2wiu_B 8 YSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLE 65 (88)
T ss_dssp CSHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 4456789999999999999999999999999999887775 34444455556666654
No 107
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=67.39 E-value=3.7 Score=33.88 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
|...||++.+.-.++..++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 63 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLN 63 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 34468888888889999999999999999988776 33344555567777664
No 108
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=66.86 E-value=3.1 Score=35.38 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=41.1
Q ss_pred ccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccccccc
Q 002305 233 KVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (939)
+++++|||...|+|+-++--.|+ ....+++...+|.+.++..-|.+...
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn~~ 58 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPM 58 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC---
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCccHH
Confidence 58999999999999999999998 44689999999999999988866543
No 109
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=66.50 E-value=3.2 Score=35.90 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=27.2
Q ss_pred CccceeccCCC----CeeeecCCcCcccccchhhhhcc
Q 002305 827 IDVCCICRHKH----GICIKCNYGNCQTTFHPTCARSA 860 (939)
Q Consensus 827 kl~C~iC~~~~----GA~IqC~~~~C~~~FHv~CA~~a 860 (939)
...|.+|+... +.+|.|. .|..+||..|.-..
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP 51 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCC
Confidence 47899999753 6899999 99999999998654
No 110
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=65.67 E-value=5.2 Score=33.05 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.|+..||++..+-..+..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~ 63 (77)
T 2b5a_A 10 KFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALD 63 (77)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 467789999988889999999999999999987775 23344455556665554
No 111
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=65.50 E-value=3.6 Score=39.80 Aligned_cols=49 Identities=22% Similarity=0.622 Sum_probs=38.5
Q ss_pred CcCcccCCCC-CCCCCEEEecccCcccccccccCcc--CCCCceeccccccc
Q 002305 706 RSCDICRRSE-TILNPILICSGCKVAVHLDCYRNAK--ESTGPWYCELCEEL 754 (939)
Q Consensus 706 ~~CsVC~~~E-~~~N~iV~Cd~C~vaVHq~CYGi~~--ip~~~WlCd~C~~~ 754 (939)
..|.+|...- ...|.-..|..|...|=+.|-+... .....|+|..|...
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 5699999865 3578889999999999999955332 23667999999875
No 112
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=65.23 E-value=2.7 Score=36.18 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=28.2
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.||.-|.+.|.+++.|||..+|||+.++...|
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L 35 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYL 35 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57777888899999999999999999887666
No 113
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=65.05 E-value=2.7 Score=35.33 Aligned_cols=33 Identities=30% Similarity=0.664 Sum_probs=26.5
Q ss_pred CCcCcccCCCCCCCCCEEEecccCccccccccc
Q 002305 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYR 737 (939)
Q Consensus 705 ~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG 737 (939)
...|++|.+.-..+.+.+.|..|++.+|..|-.
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhh
Confidence 478999965432356889999999999999964
No 114
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=64.72 E-value=1.9 Score=37.40 Aligned_cols=30 Identities=33% Similarity=0.887 Sum_probs=24.3
Q ss_pred ccceeccCC---CCeeeecCCcCcccccchhhhhc
Q 002305 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 828 l~C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...++|++. .+.+|+|. .|..+||..|.-.
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~ 42 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECD--ACKDWFHGSCVGV 42 (75)
T ss_dssp CEETTTTEECCTTSCEEECT--TTCCEEEHHHHTC
T ss_pred eeEEECCCcCCCCCCEEEcC--CCCCCEecccccc
Confidence 344589985 46899999 7999999999944
No 115
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=64.18 E-value=6.9 Score=36.19 Aligned_cols=81 Identities=20% Similarity=0.370 Sum_probs=47.4
Q ss_pred CcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccccccCCCCCCCCCCccCCCCcccccccCCCC--
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGT-- 783 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~~~~~~s~~~~v~~~~~p~~~~~C~LCp~~-- 783 (939)
..|.+|.+. .|+.|....|..|+|. ..|.|..|....-.... + | ....|.+|+.-
T Consensus 8 ~~C~~C~~~--------~C~~C~~c~~~~~~~~-----~~~~~~~c~~~~~~~~~----~-----~-~~~~c~~c~~c~~ 64 (117)
T 4bbq_A 8 RKCKACVQG--------ECGVCHYCRDMKKFGG-----PGRMKQSCVLRQCLAPR----L-----P-HSVTCSLCGEVDQ 64 (117)
T ss_dssp SCSHHHHSC--------CCSCSHHHHHSGGGTS-----CCCSCCCCGGGCCSSCB----C-----C-TTCBCTTTCCBCC
T ss_pred CcCcCcCCc--------CCCCCCCCcCCcccCC-----CCccccchhheeecccc----c-----c-ccccccccCcccc
Confidence 456667663 2999999999888764 46899988765322110 1 1 12334444321
Q ss_pred -------CCCce-eccCCchhhhcccccccccee
Q 002305 784 -------TGAFR-KSANGQWVHAFCAEWVFESTF 809 (939)
Q Consensus 784 -------gGaLK-~t~~~~WVHV~CALW~pEv~f 809 (939)
...|. -..-..|+|..|.-...+..+
T Consensus 65 c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~ 98 (117)
T 4bbq_A 65 NEETQDFEKKLMECCICNEIVHPGCLQMDGEGLL 98 (117)
T ss_dssp HHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEE
T ss_pred cccccccCcceEEeeecCCeEECCCCCCCccccc
Confidence 11233 234578999999976655543
No 116
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=63.23 E-value=3.4 Score=36.23 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=26.2
Q ss_pred HHHHHHHHhh------CccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDR------GKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~------gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+. |.++|.|||..+|||+.++..-|
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 3455555555 99999999999999998887766
No 117
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=62.90 E-value=4.4 Score=36.60 Aligned_cols=47 Identities=26% Similarity=0.636 Sum_probs=34.8
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhhccCceEEEeeCCCceeeeeEcCCCCc
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 884 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 884 (939)
...|.+|+.. |..+-|. .|...||..|....--.+ ..|.+ ||+.-..
T Consensus 25 ~~~C~vC~~~-g~LL~CD--~C~~~fH~~Cl~PpL~~~----P~g~W----~C~~C~~ 71 (88)
T 1fp0_A 25 ATICRVCQKP-GDLVMCN--QCEFCFHLDCHLPALQDV----PGEEW----SCSLCHV 71 (88)
T ss_dssp SSCCSSSCSS-SCCEECT--TSSCEECTTSSSTTCCCC----CSSSC----CCCSCCC
T ss_pred CCcCcCcCCC-CCEEECC--CCCCceecccCCCCCCCC----cCCCc----CCccccC
Confidence 4789999986 8899999 999999999986532111 22444 7887764
No 118
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=62.64 E-value=5.2 Score=31.76 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=26.0
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccccCc
Q 002305 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNA 739 (939)
Q Consensus 705 ~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~ 739 (939)
...|++|...= -+-+.|..|++.+|..|....
T Consensus 14 pt~C~~C~~~l---~qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 14 LAFCDICQKFL---LNGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp CEECTTSSSEE---CSEEECTTTTCCBCSTTSSSS
T ss_pred CcCCCCccccc---ccCCEeCCCCCeEChhHHhhC
Confidence 47899998632 278999999999999998643
No 119
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=61.91 E-value=2.9 Score=35.97 Aligned_cols=29 Identities=24% Similarity=0.767 Sum_probs=24.4
Q ss_pred cceeccCC--CCeeeecCCcCcccccchhhhhc
Q 002305 829 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 829 ~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
.|.+|++. .|.+|.|. .|...||..|...
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~P 50 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 50 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSS
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCCC
Confidence 57788863 68999999 8999999999863
No 120
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=61.78 E-value=6.5 Score=34.37 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=41.2
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
..|+-.||++..+-.++..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 8 ~~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~ 62 (94)
T 2kpj_A 8 AIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFN 62 (94)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHC
Confidence 3578889999999999999999999999999877665 23334445566666654
No 121
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.78 E-value=3.2 Score=37.16 Aligned_cols=31 Identities=23% Similarity=0.772 Sum_probs=26.7
Q ss_pred CccceeccCC----CCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHK----HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~----~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...|.+|+.. .+.+|.|. .|...||..|...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~P 50 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKP 50 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSS
T ss_pred CCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCC
Confidence 4689999986 37899999 8999999999764
No 122
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=61.46 E-value=5.4 Score=33.60 Aligned_cols=52 Identities=23% Similarity=0.504 Sum_probs=36.2
Q ss_pred CCCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCC--CCceecccccc
Q 002305 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES--TGPWYCELCEE 753 (939)
Q Consensus 702 k~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip--~~~WlCd~C~~ 753 (939)
+++...|.||......++---.|.-|++.+-..|=|-..+. ..-|.|..|+.
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34567899999876555555567777777777776544443 44599999975
No 123
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=61.13 E-value=5.5 Score=31.32 Aligned_cols=33 Identities=30% Similarity=0.654 Sum_probs=26.6
Q ss_pred CCcCcccCCCCC-CCCCEEEecccCccccccccc
Q 002305 705 PRSCDICRRSET-ILNPILICSGCKVAVHLDCYR 737 (939)
Q Consensus 705 ~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYG 737 (939)
...|++|...=- ...+-+.|..|++.+|..|..
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCCeECHHHhh
Confidence 467999987431 246889999999999999975
No 124
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=60.57 E-value=7.8 Score=35.34 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=47.5
Q ss_pred CCcchHHHHHHH-HHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhc
Q 002305 216 SDALNFTLILKK-LIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNH 274 (939)
Q Consensus 216 ~~s~~~~~~l~k-li~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~ 274 (939)
.+...+.-.||+ |.++-.++..|+|..+|||+.+|-.-+. ...++++.-.||-+.|.-+
T Consensus 9 ~~~~~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs 69 (104)
T 3trb_A 9 MRPIHPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTT 69 (104)
T ss_dssp CCCCCHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 345667889986 8888889999999999999999988887 4556777777887777544
No 125
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.45 E-value=4.1 Score=36.54 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=26.9
Q ss_pred CccceeccCCC----CeeeecCCcCcccccchhhhhcc
Q 002305 827 IDVCCICRHKH----GICIKCNYGNCQTTFHPTCARSA 860 (939)
Q Consensus 827 kl~C~iC~~~~----GA~IqC~~~~C~~~FHv~CA~~a 860 (939)
...|.+|+... +.+|.|. .|..+||..|....
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~ 60 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP 60 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCS
T ss_pred CCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCC
Confidence 47899999752 3899999 99999999998654
No 126
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=60.32 E-value=5.6 Score=31.18 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCCCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccc
Q 002305 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 753 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~ 753 (939)
+++..|.||++.-..++..+....|+-.+|..|...- ......|..|+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w--~~~~~~CP~Cr~ 51 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW--LGSHSTCPLCRL 51 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT--TTTCCSCSSSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHH--HHcCCcCcCCCC
Confidence 3457799999854334455666679999999996311 112335666653
No 127
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=60.20 E-value=11 Score=32.41 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=42.8
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSN 273 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~ 273 (939)
..|+..|+++..+-..+..|+|..+|||+.+|..-.. ......+.-.+|.+.|.-
T Consensus 12 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v 67 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGL 67 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCc
Confidence 4689999999999999999999999999998876665 333445555666666653
No 128
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=60.16 E-value=5.1 Score=39.75 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=31.5
Q ss_pred ccccccchhhhccChhhhhh------hc-------------------------cccccccchhHHHHHHhhhc
Q 002305 233 KVNVKDIASDIGISPDLLKT------TL-------------------------ADGTFASDLQCKLVKWLSNH 274 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l~~------~~-------------------------~~~~~~~~~~~k~~~wl~~~ 274 (939)
.+++.+||.++|||..+|-. .+ ..-+-.|+++. ++-||+|+
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~~le~~~~e~~~~~~~~~k~~~p~~~A-~i~~LKn~ 119 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKA-MQLYMQRF 119 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSSSCCHHH-HHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHc
Confidence 68999999999999998865 21 01222788888 55999997
No 129
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=59.72 E-value=7.1 Score=34.72 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=43.5
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
+...++..|+++..+-.++.+|+|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 15 ~~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~ 71 (104)
T 3cec_A 15 RPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALG 71 (104)
T ss_dssp CCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHC
Confidence 345778899999999889999999999999999988776 33445555566666554
No 130
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=59.61 E-value=5.1 Score=37.20 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=40.1
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc------------c-----cccccchhHHHHHHhhhccc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA------------D-----GTFASDLQCKLVKWLSNHAY 276 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~------------~-----~~~~~~~~~k~~~wl~~~~~ 276 (939)
-||.-|.+.|..++.|||..+|||+-++.-.|. + -.+.+.--..++.||.+++.
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~~~~ 116 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAHKK 116 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHHHhc
Confidence 477777778999999999999999998876664 1 12345555677777777654
No 131
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.42 E-value=4.7 Score=34.71 Aligned_cols=32 Identities=28% Similarity=0.688 Sum_probs=24.6
Q ss_pred ccceeccCC-CCeeeecCCcCc-ccccchhhhhcc
Q 002305 828 DVCCICRHK-HGICIKCNYGNC-QTTFHPTCARSA 860 (939)
Q Consensus 828 l~C~iC~~~-~GA~IqC~~~~C-~~~FHv~CA~~a 860 (939)
..| +|++. .|.+|+|...+| ..+||..|.-..
T Consensus 7 ~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~ 40 (70)
T 1x4i_A 7 GYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVGLT 40 (70)
T ss_dssp CCS-TTSCCCCSSEECCSCTTCSCCCEEHHHHTCS
T ss_pred eEE-EcCCCCCCCEeEeCCCCCCccCCcccccccC
Confidence 456 59874 789999995556 489999999643
No 132
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.26 E-value=6.3 Score=34.64 Aligned_cols=35 Identities=23% Similarity=0.613 Sum_probs=27.6
Q ss_pred CCCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002305 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (939)
Q Consensus 704 ~~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYGi 738 (939)
....|++|...=- ...+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 3478999987431 2458899999999999999864
No 133
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.13 E-value=3.5 Score=36.17 Aligned_cols=29 Identities=24% Similarity=0.791 Sum_probs=25.1
Q ss_pred cceeccCC--CCeeeecCCcCcccccchhhhhc
Q 002305 829 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 829 ~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
.|.+|++. .|.+|.|. .|...||..|...
T Consensus 28 ~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNP 58 (77)
T ss_dssp SCSSSCCCCCSTTEEECS--SSCCEEETTSSSS
T ss_pred CCcCcCCcCCCCCEEEcC--CCCccccccccCC
Confidence 58899873 68999999 9999999999863
No 134
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=59.06 E-value=5.6 Score=32.87 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=39.0
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 224 ~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
-||++..+-..+.+|+|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~ 61 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALN 61 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 37788877789999999999999999988776 34566666777777764
No 135
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=58.48 E-value=4.2 Score=31.56 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.3
Q ss_pred ccccccchhhhccChhhhhhhcc
Q 002305 233 KVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l~~~~~ 255 (939)
|+.|.++|.|+||+++.|...|.
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~ 24 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFA 24 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHH
Confidence 57899999999999999887774
No 136
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=58.42 E-value=5.9 Score=33.94 Aligned_cols=57 Identities=7% Similarity=0.141 Sum_probs=43.6
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhccccc--cccchhHHHHHHhhh
Q 002305 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGT--FASDLQCKLVKWLSN 273 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~--~~~~~~~k~~~wl~~ 273 (939)
....+...|+++.++-..+..|+|..+|||+.+|..-..... ...+.-.+|.+.|.-
T Consensus 15 ~~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~ 73 (83)
T 2a6c_A 15 MRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGL 73 (83)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCC
Confidence 345677889999999999999999999999999988776332 444555677776653
No 137
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=57.78 E-value=14 Score=33.37 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCcchHHHHHHHHHh--hCccccccchhhhccChhhhhhhccc-cccccchhHHHHHHhh
Q 002305 216 SDALNFTLILKKLID--RGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLS 272 (939)
Q Consensus 216 ~~s~~~~~~l~kli~--~gkv~~~d~~~~~gis~~~l~~~~~~-~~~~~~~~~k~~~wl~ 272 (939)
.-...|+..||+|.. .-.++..++|..+|||+.+|..-... .....+.-.+|.+.|.
T Consensus 30 ~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 89 (107)
T 2jvl_A 30 TVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLN 89 (107)
T ss_dssp CCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 334578999999998 88899999999999999988766542 2233344445555543
No 138
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=57.60 E-value=6.1 Score=34.36 Aligned_cols=35 Identities=23% Similarity=0.624 Sum_probs=27.7
Q ss_pred CCCcCcccCCCC-CCCCCEEEecccCcccccccccC
Q 002305 704 HPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 738 (939)
Q Consensus 704 ~~~~CsVC~~~E-~~~N~iV~Cd~C~vaVHq~CYGi 738 (939)
...+|++|...= ....+-+.|..|++.||..|...
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 347899998742 12468899999999999999864
No 139
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=57.23 E-value=4.5 Score=36.49 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=29.7
Q ss_pred HHHHHHHHhhC-ccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRG-KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~g-kv~~~d~~~~~gis~~~l~~~~ 254 (939)
.-||..|+..| ++++.+||.++|||.-++..+|
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L 54 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKL 54 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45788888888 9999999999999999998887
No 140
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=57.14 E-value=9.2 Score=31.05 Aligned_cols=53 Identities=6% Similarity=0.105 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhhCccccccchhhhc--cChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIG--ISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~g--is~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.|+..||++..+-..+.+++|..+| ||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 8 ~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~ 63 (71)
T 2ewt_A 8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYG 63 (71)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 4788899999998999999999999 99998876664 23344444556666554
No 141
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=56.93 E-value=3.3 Score=37.21 Aligned_cols=35 Identities=26% Similarity=0.697 Sum_probs=30.1
Q ss_pred ccceeccCC-CCeeeecCCcCcccccchhhhhccCceE
Q 002305 828 DVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYL 864 (939)
Q Consensus 828 l~C~iC~~~-~GA~IqC~~~~C~~~FHv~CA~~aG~~~ 864 (939)
..|.+|++. .+..+.|. -|.+.||..|.++.|+.-
T Consensus 16 ~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~ 51 (89)
T 1wil_A 16 EMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQ 51 (89)
T ss_dssp CCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCC
T ss_pred cccCccccccccceeccc--cccccccHhhcccccccc
Confidence 679999974 67888999 899999999999987654
No 142
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=56.81 E-value=7.9 Score=32.40 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=27.5
Q ss_pred CCCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002305 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (939)
Q Consensus 704 ~~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYGi 738 (939)
....|++|...=- ...+-+.|..|++.+|..|...
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred CCcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 3478999987431 2467899999999999999753
No 143
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=56.78 E-value=5.4 Score=34.66 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
..||.-|-+.|.+++.|||..+|||+-++...|.
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4567777676699999999999999998877664
No 144
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=56.50 E-value=9.2 Score=32.20 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.|+..||++..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 11 ~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 64 (82)
T 3s8q_A 11 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 64 (82)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 578889999998889999999999999999887765 34555556666766664
No 145
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=56.13 E-value=5.8 Score=33.19 Aligned_cols=34 Identities=29% Similarity=0.666 Sum_probs=27.0
Q ss_pred CCcCcccCCCC-CCCCCEEEecccCcccccccccC
Q 002305 705 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 738 (939)
Q Consensus 705 ~~~CsVC~~~E-~~~N~iV~Cd~C~vaVHq~CYGi 738 (939)
...|++|.+.= ....+-+.|..|++.+|..|...
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 47899998743 12458899999999999999853
No 146
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=55.72 E-value=8.5 Score=31.15 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=26.3
Q ss_pred CcchHHHHHHHHHhhCccc----cccchhhhccChhhhhh
Q 002305 217 DALNFTLILKKLIDRGKVN----VKDIASDIGISPDLLKT 252 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~----~~d~~~~~gis~~~l~~ 252 (939)
=|.+|-+-...+++.|. + +.+||.++|||+.+|..
T Consensus 6 ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~ 44 (59)
T 2glo_A 6 FTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQK 44 (59)
T ss_dssp CCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHH
Confidence 35566655567777775 7 99999999999877653
No 147
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=55.72 E-value=6.3 Score=33.99 Aligned_cols=32 Identities=38% Similarity=0.872 Sum_probs=26.6
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCccccccccc
Q 002305 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR 737 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG 737 (939)
....|+.|...= ..+-+.|..|++.+|..|..
T Consensus 34 ~pt~C~~C~~~l--~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 34 GPGWCDLCGREV--LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SCCBCTTTSSBC--SSCCEECTTSSCEECTGGGG
T ss_pred CCcchhhhhHHH--HhCcCccCCCCCeechhhhc
Confidence 347899998754 56778999999999999985
No 148
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=55.57 E-value=3.7 Score=41.10 Aligned_cols=29 Identities=31% Similarity=0.903 Sum_probs=25.1
Q ss_pred ccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 828 l~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
..|.+|+.. |..+-|. .|...||..|...
T Consensus 5 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~C~~p 33 (184)
T 3o36_A 5 DWCAVCQNG-GELLCCE--KCPKVFHLSCHVP 33 (184)
T ss_dssp SSCTTTCCC-SSCEECS--SSSCEECTTTSSS
T ss_pred CccccCCCC-CeeeecC--CCCcccCccccCC
Confidence 579999976 8899999 8999999999744
No 149
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=54.36 E-value=6.9 Score=30.77 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=25.0
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
...+..|..+|. +.++||.++|||+-++...+
T Consensus 21 ~~~i~~l~~~g~-s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 21 VSVAHELAKMGY-TVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHH
Confidence 344556677775 99999999999999887654
No 150
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=54.24 E-value=7.9 Score=39.19 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=30.9
Q ss_pred ceeccCC---CCeeeecCCcCcccccchhhhhccCceEEEeeCCCceeeeeEcCCCCc
Q 002305 830 CCICRHK---HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 884 (939)
Q Consensus 830 C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 884 (939)
=+||+.. .-..++|. .|.++||..|-+.....+ ..+...|.+.|..=++
T Consensus 7 yCYCG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~----lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 7 SVDEENGRQLGEVELQCG--ICTKWFTADTFGIDTSSC----LPFMTNYSFHCNVCHH 58 (177)
T ss_dssp ----CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTTC----CTTCCSEEEECTTTST
T ss_pred EEEcCCCCCCCceeEeec--cccceecHHHhcccccCc----cccceeEEEEccccCC
Confidence 3588874 45689999 899999999997433111 1223367788876654
No 151
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=54.10 E-value=13 Score=37.59 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=43.3
Q ss_pred cCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccccccCCCCCCCCCCccCCCCcccccccCCCCC-CCcee
Q 002305 711 CRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTT-GAFRK 789 (939)
Q Consensus 711 C~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~~~~~~s~~~~v~~~~~p~~~~~C~LCp~~g-GaLK~ 789 (939)
|+......-.+|+|++|..-||..|.+...-+ |... .. .....|..|...+ .-+++
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~--------~lp~--------------~~-fY~F~C~~C~~~g~E~f~R 66 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSS--------CLPF--------------MT-NYSFHCNVCHHSGNTYFLR 66 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTT--------CCTT--------------CC-SEEEECTTTSTTSSCEEEE
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccC--------cccc--------------ce-eEEEEccccCCCCcceeEe
Confidence 44432335689999999999999998754311 1100 00 1256777787655 44555
Q ss_pred ccCCchhhhc-ccccc
Q 002305 790 SANGQWVHAF-CAEWV 804 (939)
Q Consensus 790 t~~~~WVHV~-CALW~ 804 (939)
. .-.|+|+. .|||+
T Consensus 67 ~-~~~w~~v~~laLyN 81 (177)
T 3rsn_A 67 K-QANLKEMCLSALAN 81 (177)
T ss_dssp C-CCCHHHHHHHHHHH
T ss_pred c-cCCHHHHHHHHHHh
Confidence 4 45699985 66776
No 152
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=53.97 E-value=9.7 Score=32.11 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
..|.-.||++..+-..+.+++|..+|||+.++..-.. ......+.-.+|.+.|.
T Consensus 11 ~~l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~ 65 (80)
T 3kz3_A 11 RRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILK 65 (80)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 4577888988888889999999999999999887775 33345556666666665
No 153
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=53.83 E-value=11 Score=31.51 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=40.4
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchh--HHHHHHhhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQ--CKLVKWLSN 273 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~--~k~~~wl~~ 273 (939)
..|+..||++..+-..+..++|..+|||+.+|..-... .-.|.+. .+|++.|..
T Consensus 9 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g-~~~~~~~~l~~~~~~l~~ 64 (84)
T 2ef8_A 9 RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESF-ERRLDALELFELLEVVAS 64 (84)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT-SSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHHcc
Confidence 45788999999999999999999999999998776652 2334433 556555543
No 154
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=53.83 E-value=5.6 Score=35.00 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=26.8
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
.||.-|.+ |.+++.|||..+|||+-++...|.
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~ 58 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQLSQSALSQHLA 58 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46666666 999999999999999998877664
No 155
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=53.52 E-value=4.3 Score=41.49 Aligned_cols=30 Identities=33% Similarity=0.842 Sum_probs=25.6
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...|.+|+.. |..+-|. .|...||..|...
T Consensus 7 ~~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~p 36 (207)
T 3u5n_A 7 EDWCAVCQNG-GDLLCCE--KCPKVFHLTCHVP 36 (207)
T ss_dssp CSSBTTTCCC-EEEEECS--SSSCEECTTTSSS
T ss_pred CCCCCCCCCC-CceEEcC--CCCCccCCccCCC
Confidence 3679999975 8899999 8999999999744
No 156
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=53.39 E-value=5.8 Score=35.03 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=29.3
Q ss_pred HHHHHHHHhhC---ccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRG---KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~g---kv~~~d~~~~~gis~~~l~~~~ 254 (939)
.-||+-|.+.| .+++.+||.++|||.-++...|
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 34778888999 9999999999999998888877
No 157
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=53.28 E-value=4.8 Score=35.59 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChh-hhhhhcc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPD-LLKTTLA 255 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~-~l~~~~~ 255 (939)
..||.-|-.+|.+++++||.++||++. .+...|.
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHH
Confidence 467788888999999999999999999 8888774
No 158
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.15 E-value=4.2 Score=36.72 Aligned_cols=47 Identities=21% Similarity=0.522 Sum_probs=33.1
Q ss_pred ccceeccCCC--CeeeecCCcCcccccchhhhhccCceEEEeeCCCceeeeeEcCCCCc
Q 002305 828 DVCCICRHKH--GICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 884 (939)
Q Consensus 828 l~C~iC~~~~--GA~IqC~~~~C~~~FHv~CA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 884 (939)
..|.+|++.. +.+|.|. .|...||..|....--.+ ..+.+ ||+....
T Consensus 17 ~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~----P~g~W----~C~~C~~ 65 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEI----PRGIW----RCPKCIL 65 (92)
T ss_dssp CCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSC----CSSCC----CCHHHHH
T ss_pred CCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccC----CCCCc----CCccCcC
Confidence 6799999862 4699999 899999999996422111 12333 8887754
No 159
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=53.06 E-value=8.6 Score=34.60 Aligned_cols=56 Identities=9% Similarity=0.199 Sum_probs=43.3
Q ss_pred CcchHHHHHHH-HHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 217 DALNFTLILKK-LIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 217 ~s~~~~~~l~k-li~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
+...++..|++ |...-..+..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 7 ~~~~~g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~ 64 (113)
T 2eby_A 7 KPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFD 64 (113)
T ss_dssp CCCCHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 34568889998 8888889999999999999999987775 33355555666766654
No 160
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=53.00 E-value=5.9 Score=40.18 Aligned_cols=45 Identities=7% Similarity=0.056 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHH
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCK 266 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k 266 (939)
-..||+.|-..|.|+|.|+|.++|+|.+|+.--|.+-.- |+|--.
T Consensus 14 ~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~-~~l~~r 58 (190)
T 4a0z_A 14 REAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNI-PELRKR 58 (190)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTC-CCHHHH
T ss_pred HHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcC-cchhhH
Confidence 478999999999999999999999999999988863322 555433
No 161
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=51.75 E-value=6.7 Score=35.59 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=26.6
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
.||.-|. .|.++++|||..+|||+-++...|.
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L~ 60 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4666665 5999999999999999999877664
No 162
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.70 E-value=7.5 Score=34.07 Aligned_cols=52 Identities=27% Similarity=0.561 Sum_probs=31.4
Q ss_pred CCCcCcccCCCCCCCCCEE---EecccCcccccccccCccCCCCceecccccccc
Q 002305 704 HPRSCDICRRSETILNPIL---ICSGCKVAVHLDCYRNAKESTGPWYCELCEELL 755 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV---~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~~ 755 (939)
....|.||++....++.++ .|.+..-.||+.|.--=....+...|..|+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 4467999997543455665 223335899999963111112345788887753
No 163
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=51.57 E-value=5.7 Score=40.33 Aligned_cols=30 Identities=20% Similarity=0.689 Sum_probs=24.6
Q ss_pred ccceeccCC------CCeeeecCCcCcccccchhhhhc
Q 002305 828 DVCCICRHK------HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 828 l~C~iC~~~------~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
..|.+|++. .+.+|+|. .|..+||..|.-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi 38 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENL 38 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSC
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhcccc
Confidence 469999985 23499999 9999999999843
No 164
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=51.46 E-value=8.2 Score=32.43 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=26.4
Q ss_pred CCcCcccCCCCC-CCCCEEEecccCccccccccc
Q 002305 705 PRSCDICRRSET-ILNPILICSGCKVAVHLDCYR 737 (939)
Q Consensus 705 ~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYG 737 (939)
...|++|...=- ...+-+.|..|++.+|..|..
T Consensus 24 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 57 (66)
T 1y8f_A 24 PTYCYECEGLLWGIARQGMRCTECGVKCHEKCQD 57 (66)
T ss_dssp CCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHH
T ss_pred CcChhhcChhhcccCcceeEcCCCCCeeCHHHHh
Confidence 477999987431 235789999999999999975
No 165
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=49.51 E-value=8.4 Score=34.47 Aligned_cols=49 Identities=14% Similarity=0.315 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl 271 (939)
.+-.=||.|.+ ..+=+++|.++|||.-+|.+-. ..++.|.|..+|-+-|
T Consensus 21 ~~~~kLK~il~--GikQ~eLAK~iGIsqsTLSaIe-nG~~~PsL~~kIAk~f 69 (83)
T 2l1p_A 21 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIV-NSTYYANVSAAKCQEF 69 (83)
T ss_dssp HHHHHHHHHHT--TSCHHHHHHHSSSCHHHHHHHH-TCSSCCCCCSHHHHHH
T ss_pred HHHHHHHHHHH--hcCHHHHHHHcCCCHHHHHHHH-cCCCCCCchHHHHHHH
Confidence 34556888887 7888999999999999998776 4555577778877644
No 166
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=49.46 E-value=12 Score=32.09 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.|.-+||++..+-..+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 17 ~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~ 70 (92)
T 1lmb_3 17 RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILK 70 (92)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 456667766677789999999999999999877765 23344455556666664
No 167
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.19 E-value=10 Score=33.57 Aligned_cols=35 Identities=29% Similarity=0.656 Sum_probs=27.7
Q ss_pred CCCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002305 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (939)
Q Consensus 704 ~~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYGi 738 (939)
....|++|...=. ...+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CCcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence 4578999987431 2468899999999999999753
No 168
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.17 E-value=7.2 Score=34.41 Aligned_cols=50 Identities=32% Similarity=0.733 Sum_probs=38.6
Q ss_pred CCCCcCcccCCCC-CCCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002305 703 EHPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (939)
Q Consensus 703 ~~~~~CsVC~~~E-~~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~ 754 (939)
+....|.-|...= ...|.-..|..|...|=+.| ++.. ..+.|+|-.|...
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C-rv~~-~~~~W~C~VC~k~ 73 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC-RIQE-SNGTWRCKVCSGP 73 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS-EEEC-STTCEEEHHHHSS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc-cccC-CCCCEEEeeCchh
Confidence 4457899999753 35678889999999999999 4443 2378999999754
No 169
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=48.68 E-value=8.8 Score=33.57 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhh
Q 002305 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKT 252 (939)
Q Consensus 218 s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~ 252 (939)
|.+|-.-.-+|++.| .++.+||.++|||+.+|..
T Consensus 24 s~e~k~~~v~~~~~g-~s~~~iA~~~gIs~sTl~r 57 (87)
T 2elh_A 24 TPRDKIHAIQRIHDG-ESKASVARDIGVPESTLRG 57 (87)
T ss_dssp CHHHHHHHHHHHHHT-CCHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHCcCHHHHHH
Confidence 556644444566666 8999999999999877643
No 170
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=47.82 E-value=14 Score=31.11 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.|+..||++..+-..+..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 14 ~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~ 67 (83)
T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIG 67 (83)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 467889999888889999999999999998877765 33445555556665553
No 171
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=47.68 E-value=7.2 Score=34.81 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.4
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
-||+.|...|..++.|||..+|||+-++---|
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~is~stvs~hL 62 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKLPQSTVSQHL 62 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 47777888999999999999999998876554
No 172
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=47.63 E-value=16 Score=33.20 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=43.5
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSN 273 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~ 273 (939)
..|+.-||+|..+-..+.+++|..+|||..+|..-.. ....+.+.-.+|.+.|.=
T Consensus 20 ~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v 75 (114)
T 3vk0_A 20 AVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGV 75 (114)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 3578889999999999999999999999999887765 344566666777776653
No 173
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=46.37 E-value=8.1 Score=32.44 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=25.5
Q ss_pred HHHHHHHhhC-ccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRG-KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~g-kv~~~d~~~~~gis~~~l~~~~ 254 (939)
-||+-|-+.| -+++.|||..+|||..++...|
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4777776665 5999999999999988776554
No 174
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=46.29 E-value=16 Score=32.70 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=43.7
Q ss_pred CCCCCCc--chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 212 DVNPSDA--LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 212 ~~~~~~s--~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
+..|.+. ..|+..||+|..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 18 ~~~M~~~~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 18 GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 81 (99)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 4455443 3588899999999999999999999999999887765 34455555566666554
No 175
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=45.92 E-value=8.2 Score=36.68 Aligned_cols=37 Identities=11% Similarity=0.337 Sum_probs=30.7
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
+..|. .||+.|-+.|.+++.|||.++|+|+.++...|
T Consensus 8 d~~d~-~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 44 (151)
T 2dbb_A 8 DRVDM-QLVKILSENSRLTYRELADILNTTRQRIARRI 44 (151)
T ss_dssp CHHHH-HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 33444 57888999999999999999999999887665
No 176
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=45.79 E-value=14 Score=32.74 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhccc--cccccchhHHHHHHhh
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWLS 272 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~--~~~~~~~~~k~~~wl~ 272 (939)
|+-.||++..+-..+..++|..+|||+.+|..-... ...+.+.-.+|.+.|.
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~ 55 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 55 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 456789999999999999999999999999877653 3444455566666664
No 177
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=45.55 E-value=7.3 Score=37.85 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=29.3
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
-||+.|-+.|.+++.+||.++|+|+.++..-|
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl 38 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRI 38 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 47899999999999999999999999988766
No 178
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=45.11 E-value=12 Score=37.70 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=42.7
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHH
Q 002305 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLV 268 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~ 268 (939)
|-++.|..+++|++.| .+..+||..+|+|+-.+...|.=..+.|.++-.|.
T Consensus 37 ~piE~A~a~~~L~~~G-~t~eeiA~~lG~s~s~V~~~LrLl~Lp~~v~~~v~ 87 (178)
T 1r71_A 37 TPREIADFIGRELAKG-KKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFN 87 (178)
T ss_dssp CHHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578899999999997 69999999999999999888876667777666543
No 179
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=44.94 E-value=6.4 Score=39.89 Aligned_cols=29 Identities=31% Similarity=0.891 Sum_probs=25.3
Q ss_pred ccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 828 l~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
..|.+|+.. |..+.|. +|...||..|...
T Consensus 3 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~p 31 (189)
T 2ro1_A 3 TICRVCQKP-GDLVMCN--QCEFCFHLDCHLP 31 (189)
T ss_dssp CCBTTTCCC-SSCCCCT--TTCCBCCSTTSTT
T ss_pred CcCccCCCC-CceeECC--CCCchhccccCCC
Confidence 469999976 8889999 8999999999864
No 180
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=44.05 E-value=6.1 Score=32.68 Aligned_cols=33 Identities=36% Similarity=0.816 Sum_probs=26.8
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCcccccccccC
Q 002305 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRN 738 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi 738 (939)
....|+.|.+.= ..+-+.|..|++.+|..|...
T Consensus 21 ~pt~C~~C~~~i--~kqg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 21 GPGWCDLCGREV--LRQALRCANCKFTCHSECRSL 53 (59)
T ss_dssp CCEECTTTCSEE--CSCCEECTTTSCEECHHHHTT
T ss_pred CCeEchhcchhh--hhCccEeCCCCCeEehhhhhh
Confidence 347899998643 467789999999999999853
No 181
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=43.99 E-value=11 Score=30.37 Aligned_cols=29 Identities=24% Similarity=0.754 Sum_probs=23.4
Q ss_pred CcCcccCCCCCCCCCEEEecccCccccccccc
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR 737 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYG 737 (939)
..|++|...-- +-+.|..|+..+|+.|-.
T Consensus 15 t~C~~C~k~i~---~G~kC~~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMI---FGVKCKHCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSC---CEEEETTTTEEESSSCTT
T ss_pred cCccccCceeE---CcCCCCCCCCccchhhcC
Confidence 67999987432 238999999999999965
No 182
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=43.96 E-value=10 Score=33.85 Aligned_cols=33 Identities=24% Similarity=0.574 Sum_probs=26.0
Q ss_pred CCcCcccCCCC-C-CCCCEEEecccCccccccccc
Q 002305 705 PRSCDICRRSE-T-ILNPILICSGCKVAVHLDCYR 737 (939)
Q Consensus 705 ~~~CsVC~~~E-~-~~N~iV~Cd~C~vaVHq~CYG 737 (939)
..+|.||...= . ..-.-+.|.-|+..||..||.
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~ 72 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHH
Confidence 47899999752 2 223678999999999999984
No 183
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=43.74 E-value=9.2 Score=36.45 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=28.9
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.||+-|-+.|.+++.|||.++|+|+.++...|
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 43 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVRV 43 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 58888999999999999999999999887665
No 184
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=43.42 E-value=9.3 Score=33.12 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=28.9
Q ss_pred HHHHHHHHhhC---ccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRG---KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~g---kv~~~d~~~~~gis~~~l~~~~ 254 (939)
.-||.-|-+.| .+++++||.++|||.-++...|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 56778888888 9999999999999998887766
No 185
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=43.27 E-value=9.6 Score=36.10 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=28.4
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.||+-|-+.|.+++.|||..+|+|+.++...|
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 40 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERV 40 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999887655
No 186
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=43.18 E-value=7.8 Score=34.01 Aligned_cols=29 Identities=24% Similarity=0.767 Sum_probs=23.4
Q ss_pred cceeccCC--CCeeeecCCcCcccccchhhhhc
Q 002305 829 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 829 ~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
.|.+|++. .+.+|.|. .|...||..|...
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~P 58 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 58 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSS
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCC
Confidence 36677765 46789999 8999999999864
No 187
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.11 E-value=4.6 Score=34.88 Aligned_cols=35 Identities=31% Similarity=0.653 Sum_probs=27.1
Q ss_pred CCCcCcccCCCCC-CCCCEEEecccCcccccccccC
Q 002305 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (939)
Q Consensus 704 ~~~~CsVC~~~E~-~~N~iV~Cd~C~vaVHq~CYGi 738 (939)
....|++|...=. ...+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSY 62 (74)
T ss_dssp SCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGG
T ss_pred CCcCchhcChhhccccCCccccCCCCCccChhHHhh
Confidence 3578999986421 1357899999999999999863
No 188
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=43.04 E-value=9.4 Score=37.69 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 218 s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..|. .||+.|.+.|.+++.|||.++|+|+.++..-|
T Consensus 27 ~~d~-~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl 62 (171)
T 2e1c_A 27 EIDK-KIIKILQNDGKAPLREISKITGLAESTIHERI 62 (171)
T ss_dssp HHHH-HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3444 58889999999999999999999999887665
No 189
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=43.01 E-value=13 Score=31.21 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHhh
Q 002305 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (939)
Q Consensus 225 l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~ 272 (939)
|+++++.-. +..++|..+|||+.+|..-.....+.++.-.+|.+.|.
T Consensus 4 l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~p~~~l~~ia~~l~ 50 (79)
T 3bd1_A 4 IDIAINKLG-SVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTN 50 (79)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCCGGGHHHHHHHTT
T ss_pred HHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHC
Confidence 566655544 99999999999999988776644444566667777665
No 190
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=42.40 E-value=12 Score=33.03 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHhhC-ccccccchhhhccChhhhhh
Q 002305 218 ALNFTLILKKLIDRG-KVNVKDIASDIGISPDLLKT 252 (939)
Q Consensus 218 s~~~~~~l~kli~~g-kv~~~d~~~~~gis~~~l~~ 252 (939)
|.+|-+-.-+++..+ ..++.+||.++|||+.+|..
T Consensus 7 s~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~r 42 (97)
T 2jn6_A 7 SEEFKRDAVALYENSDGASLQQIANDLGINRVTLKN 42 (97)
T ss_dssp CHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHH
Confidence 455655444556545 68999999999999876643
No 191
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=42.32 E-value=10 Score=36.21 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.|. -||+-|-+.|.+++++||.++|+|+.++...|
T Consensus 8 ~~~-~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (151)
T 2cyy_A 8 IDK-KIIKILQNDGKAPLREISKITGLAESTIHERI 42 (151)
T ss_dssp HHH-HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHH
T ss_pred HHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 344 57888888999999999999999999886655
No 192
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=42.02 E-value=9.3 Score=45.47 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=0.0
Q ss_pred CCCcCcccCCCC-CCCCCEEEecccCccccccccc
Q 002305 704 HPRSCDICRRSE-TILNPILICSGCKVAVHLDCYR 737 (939)
Q Consensus 704 ~~~~CsVC~~~E-~~~N~iV~Cd~C~vaVHq~CYG 737 (939)
...+|++|.+.= ....+-+.|..|++.||..|..
T Consensus 47 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~ 81 (674)
T 3pfq_A 47 QPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHE 81 (674)
T ss_dssp -----------------------------------
T ss_pred CCCccccccccccccCCceeECCCCCCCcChhhcC
Confidence 357899998742 1245778999999999999974
No 193
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.99 E-value=9.7 Score=33.13 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=30.6
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002305 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (939)
Q Consensus 705 ~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~ 754 (939)
...|.||...-. +-+.|..|+..+|..|..--......=.|..|...
T Consensus 15 i~~C~IC~~~i~---~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 15 VKICNICHSLLI---QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SCBCSSSCCBCS---SSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCcCcchhhHcc---cCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 367999997532 23589999999999997421111112357777654
No 194
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=41.87 E-value=9.9 Score=33.43 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||+-| .|.+++.|||..+|||+-++...|
T Consensus 34 ~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L 64 (96)
T 1y0u_A 34 RKILRML--DKGRSEEEIMQTLSLSKKQLDYHL 64 (96)
T ss_dssp HHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3467766 788999999999999999987766
No 195
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=41.18 E-value=11 Score=32.62 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|...|.+++.|||..+|||+-++...|
T Consensus 23 ~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 567888888899999999999999999887766
No 196
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=41.04 E-value=18 Score=32.43 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=43.4
Q ss_pred CCcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 216 SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 216 ~~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
...-.|+--||+|..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 5 ~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~ 62 (114)
T 3op9_A 5 TIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFH 62 (114)
T ss_dssp -CCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 3334588899999998889999999999999999887765 33445555567777664
No 197
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=41.01 E-value=10 Score=37.15 Aligned_cols=29 Identities=28% Similarity=0.693 Sum_probs=25.5
Q ss_pred ccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 828 l~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
..|.+|+.. |..+-|. .|...||..|...
T Consensus 64 d~C~vC~~G-G~LlcCD--~Cpr~Fh~~Cl~p 92 (142)
T 2lbm_A 64 EQCRWCAEG-GNLICCD--FCHNAFCKKCILR 92 (142)
T ss_dssp CSCSSSCCC-SSEEECS--SSCCEEEHHHHHH
T ss_pred CeecccCCC-CcEEeCC--CCCCeeeHhhcCC
Confidence 679999985 8888888 9999999999964
No 198
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=40.92 E-value=10 Score=32.88 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|...|.+++.|||..+|||+-++...|
T Consensus 19 ~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l 51 (100)
T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHI 51 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHH
Confidence 447788888899999999999999999887665
No 199
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=40.88 E-value=11 Score=35.86 Aligned_cols=32 Identities=16% Similarity=0.516 Sum_probs=28.3
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.||+-|-+.|.+++.+||..+|+|+.++...|
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVSAVQSRV 42 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999886655
No 200
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=40.83 E-value=11 Score=35.16 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=28.4
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.||+-|-+.|..++.|||.++|||+.++...|
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 39 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRV 39 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46778888899999999999999999988776
No 201
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=40.45 E-value=11 Score=36.35 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.5
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.||+-|.+.|.++++|||.++|+|+.++...|
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 45 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRRL 45 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 58888999999999999999999998886655
No 202
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=40.16 E-value=10 Score=35.98 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=28.2
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.||+-|-+.|.+++.|||..+|+|+.++...|
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 38 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRI 38 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 47788888899999999999999999887666
No 203
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=40.11 E-value=11 Score=33.38 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|. .|.+++.|||..+|||+-++...|
T Consensus 26 ~~Il~~L~-~~~~~~~ela~~l~is~~tvs~~L 57 (102)
T 3pqk_A 26 LMLVCTLV-EGEFSVGELEQQIGIGQPTLSQQL 57 (102)
T ss_dssp HHHHHHHH-TCCBCHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34677775 488999999999999999887666
No 204
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=39.95 E-value=7.8 Score=44.48 Aligned_cols=29 Identities=38% Similarity=0.918 Sum_probs=24.8
Q ss_pred ccceeccCC---CCeeeecCCcCcccccchhhhh
Q 002305 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (939)
Q Consensus 828 l~C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~ 858 (939)
...++|++. .|.+|+|. .|..+||..|.-
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD--~C~~WfH~~CVg 36 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECD--MCQDWFHGSCVG 36 (447)
T ss_dssp CEETTTTEECCTTSCEEECT--TTCCEEEHHHHT
T ss_pred CeEEeCCCcCCCCCCeEEcC--CCCcccccccCC
Confidence 356799986 58999999 899999999983
No 205
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=39.61 E-value=12 Score=39.63 Aligned_cols=51 Identities=12% Similarity=0.298 Sum_probs=43.8
Q ss_pred hCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccccccc
Q 002305 231 RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (939)
Q Consensus 231 ~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (939)
+.+++++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|.+...
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~ 59 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNKI 59 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 4579999999999999999999998 56789999999999999988876543
No 206
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=39.42 E-value=27 Score=29.49 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=42.1
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhccc--cccccchhHHHHHHhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWLS 272 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~--~~~~~~~~~k~~~wl~ 272 (939)
.+|.--||++-.+-.++..++|..+|||..+|..-... ...+.+.-.+|.+.|.
T Consensus 9 ~~~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~ 64 (78)
T 3qq6_A 9 HMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 64 (78)
T ss_dssp TTHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 35777889998888999999999999999998877754 3455556666666664
No 207
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.36 E-value=17 Score=31.66 Aligned_cols=32 Identities=22% Similarity=0.602 Sum_probs=26.0
Q ss_pred CCccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 826 GIDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 826 ~kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
....|.||....-..+.|. .|...||..|..+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAK 45 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--SSCCEECHHHHHH
T ss_pred CCCcCcchhhHcccCCccC--CCCchhhHHHHHH
Confidence 3478999998755567888 9999999999953
No 208
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.16 E-value=18 Score=29.66 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=24.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
..||.-+ -+|. ++++||.++|||+.++...+.
T Consensus 17 ~~il~~~-~~g~-s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 17 REVFELL-VQDK-TTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp HHHHHHH-TTTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHH-HcCC-CHHHHHHHHCCCHHHHHHHHH
Confidence 3455444 5676 999999999999999987773
No 209
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=39.05 E-value=21 Score=32.17 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=43.7
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhc
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNH 274 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~ 274 (939)
..|+..||++..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.=.
T Consensus 27 ~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~ 83 (117)
T 3f52_A 27 EALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGAS 83 (117)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCC
Confidence 4688999999988889999999999999999887765 3345556666776666533
No 210
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=38.51 E-value=13 Score=33.25 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
..||.-| ..|.+++.|||..+|||+-++...|.
T Consensus 24 ~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3477766 78999999999999999999877663
No 211
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=38.21 E-value=22 Score=30.47 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHHHHHh
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl 271 (939)
+-|.+.|-.+| .+..++|..+|||+-+|...+... .|.+..+|-+-|
T Consensus 12 ~ri~~~l~~~g-lT~~~LA~~~Gvs~stls~~~~~~--~p~~~~~IA~aL 58 (74)
T 1neq_A 12 ADVIAGLKKRK-LSLSALSRQFGYAPTTLANALERH--WPKGEQIIANAL 58 (74)
T ss_dssp HHHHHHHHTTS-CCHHHHHHHHSSCHHHHHHTTTSS--CHHHHHHHHHHT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHcCC--CccHHHHHHHHH
Confidence 55666666555 899999999999999999887542 355544454443
No 212
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=38.19 E-value=9.3 Score=34.07 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.-||.-|-..| +++.+||.++|||.-++..-|
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 34555566688 999999999999998887776
No 213
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=38.19 E-value=16 Score=37.97 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=40.5
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhccccccccchhHHH
Q 002305 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKL 267 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~ 267 (939)
+-.+.+..+++|++.| .+..+||..+|+|+.++...|.-..+.|+++-.|
T Consensus 119 ~~~E~a~~~~~l~~~g-~t~~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l 168 (230)
T 1vz0_A 119 SPVEEARGYQALLEMG-LTQEEVARRVGKARSTVANALRLLQLPPEALEAL 168 (230)
T ss_dssp CHHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHH
Confidence 4577899999999776 6899999999999999988876556667666544
No 214
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=38.00 E-value=2.6 Score=35.08 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=30.2
Q ss_pred CCCCcCcccCCCCCCCCCEEE--ecccCcccccccccCccCCCCceeccccccc
Q 002305 703 EHPRSCDICRRSETILNPILI--CSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (939)
Q Consensus 703 ~~~~~CsVC~~~E~~~N~iV~--Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~ 754 (939)
+....|.||+..+.. ..+.- |.+....||+.|.--=....+.+.|+.|.+.
T Consensus 4 ~~~~~CrIC~~~~~~-~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELGN-ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECSC-CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCCC-ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCe
Confidence 345779999975321 12333 4455559999996311111235788888764
No 215
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=37.57 E-value=24 Score=34.55 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
..|+..||+|..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 10 ~~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~ 64 (192)
T 1y9q_A 10 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 64 (192)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 3578899999999999999999999999999887665 23344445556666664
No 216
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=37.31 E-value=9.1 Score=44.35 Aligned_cols=29 Identities=34% Similarity=0.953 Sum_probs=24.2
Q ss_pred ccceeccCC---CCeeeecCCcCcccccchhhhh
Q 002305 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (939)
Q Consensus 828 l~C~iC~~~---~GA~IqC~~~~C~~~FHv~CA~ 858 (939)
...++|++. .|.+|+|. .|..+||..|.-
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd--~C~~WfH~~Cvg 68 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECD--ICKDWFHGSCVG 68 (488)
T ss_dssp CEETTTTEECCTTSCEEEBT--TTCCEEEHHHHT
T ss_pred CeEEeCCCcCCCCCCeEEcc--CCCCceeeeecC
Confidence 344499985 68999999 799999999983
No 217
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=36.45 E-value=11 Score=39.68 Aligned_cols=30 Identities=23% Similarity=0.706 Sum_probs=22.6
Q ss_pred ccceeccCC--CCeeeecCCcCcccccchhhhhc
Q 002305 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 828 l~C~iC~~~--~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
-.|.+|+.. .|.++.|. .|...||..|...
T Consensus 175 c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~P 206 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 206 (226)
T ss_dssp TSCSSSCCCCC--CCEECS--SSCCEECSCC--C
T ss_pred CCCcCCCCCCCCCCeEEcC--CCCcceeCccCCC
Confidence 359999874 68899999 8999999999864
No 218
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=36.32 E-value=19 Score=32.86 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=36.5
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc-----------------ccccccchhHHHHHHhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-----------------DGTFASDLQCKLVKWLSNH 274 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-----------------~~~~~~~~~~k~~~wl~~~ 274 (939)
.||.-|. .|.+++.|||..+|||+-++...|. -..+.++.-..+..||...
T Consensus 22 ~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~~~ 89 (118)
T 3f6o_A 22 AVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLAEQ 89 (118)
T ss_dssp HHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHHHH
Confidence 3666665 6999999999999999998876654 1234455555667777654
No 219
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=35.83 E-value=30 Score=30.91 Aligned_cols=61 Identities=13% Similarity=0.317 Sum_probs=39.2
Q ss_pred hhhhccccccccceeecCccccccccccccCCCccceeccCC-CCeeeecCCcCcccccchhhhhcc
Q 002305 795 WVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSA 860 (939)
Q Consensus 795 WVHV~CALW~pEv~f~~~~l~~Vegie~I~r~kl~C~iC~~~-~GA~IqC~~~~C~~~FHv~CA~~a 860 (939)
-.|..|+.+-.++.-..-.--++. -.......|.+|+.. .|..-.|. .|.-.+|+.||...
T Consensus 18 ~lhe~Ca~lP~~i~Hp~Hp~H~L~---L~~~~~~~C~~C~~~~~~~~Y~C~--~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 18 KYDEIAKDWPKKVKHVLHEEHELE---LTRVQVYTCDKCEEEGTIWSYHCD--ECDFDLHAKCALNE 79 (89)
T ss_dssp HHHHHTSSSCSEECCSTTTTSCEE---EECCSSCCCTTTSCCCCSCEEECT--TTCCCCCHHHHHCS
T ss_pred HHhHHHHcCCceecCCCCCCCccE---EeeCCCeEeCCCCCcCCCcEEEcC--CCCCeEcHHhcCCC
Confidence 489999987766643210001111 111114689999986 56667898 89999999999654
No 220
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=35.68 E-value=16 Score=31.76 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=27.6
Q ss_pred HHHHHHHHh-hCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLID-RGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~-~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..+|..|+. .|.+++.|||..+|||+-++...|
T Consensus 24 ~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l 57 (109)
T 2d1h_A 24 VAVLLKMVEIEKPITSEELADIFKLSKTTVENSL 57 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 456666776 789999999999999999987766
No 221
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=34.93 E-value=16 Score=32.80 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|. .|..++.|||..+|||+-++...|
T Consensus 29 ~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L 60 (106)
T 1r1u_A 29 IRIMELLS-VSEASVGHISHQLNLSQSNVSHQL 60 (106)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34666666 788999999999999998887666
No 222
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=34.35 E-value=16 Score=32.69 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=26.1
Q ss_pred CcCcccCCCCCCCCCEEEecccCcccccccccCc
Q 002305 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNA 739 (939)
Q Consensus 706 ~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~ 739 (939)
..|++|.+.. .+-...|..|++.+|..|.-.+
T Consensus 48 ~~C~~C~~~~--~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 48 YTCDKCEEEG--TIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CCCTTTSCCC--CSCEEECTTTCCCCCHHHHHCS
T ss_pred eEeCCCCCcC--CCcEEEcCCCCCeEcHHhcCCC
Confidence 5799999853 3567899999999999997543
No 223
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=34.17 E-value=16 Score=36.01 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=31.3
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
+..|. .||+.|-+.|.++++|||.++|+|+.++...|
T Consensus 16 d~~d~-~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l 52 (171)
T 2ia0_A 16 DDLDR-NILRLLKKDARLTISELSEQLKKPESTIHFRI 52 (171)
T ss_dssp CHHHH-HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 44555 57888989999999999999999999987665
No 224
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=33.83 E-value=32 Score=31.47 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=43.5
Q ss_pred CcchHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
+-..|+.-||+|...-..+..++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 9 ~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~ 65 (126)
T 3ivp_A 9 DFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLN 65 (126)
T ss_dssp CTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 445788999999999999999999999999999876665 33445555566666664
No 225
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=32.63 E-value=28 Score=26.92 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=29.8
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceecccccc
Q 002305 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 753 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~ 753 (939)
....|.||++.-...+..+..-.|+-.||..|...-.. ....|..|+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~ 51 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK--EGYRCPLCSG 51 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH--HTCCCTTSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH--cCCcCCCCCC
Confidence 45679999985322345566677999999999732110 0145666654
No 226
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=32.01 E-value=27 Score=28.49 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=32.6
Q ss_pred HHHHHhhCccccccchhhhccChhhhhhhccccccccch-hHHHHHHhhhc
Q 002305 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDL-QCKLVKWLSNH 274 (939)
Q Consensus 225 l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~~~~~~-~~k~~~wl~~~ 274 (939)
++++|+.|. +-.++|..+|||+.++-.-. . ..|.. ..+|-+.|...
T Consensus 3 ~~~~i~~~~-tq~~lA~~lGvs~~~Vs~we--~-~~p~~~~~~i~~~~~g~ 49 (61)
T 1rzs_A 3 KKDVIDHFG-TQRAVAKALGISDAAVSQWK--E-VIPEKDAYRLEIVTAGA 49 (61)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHCC--S-BCCHHHHHHHHHHTTSC
T ss_pred HHHHHHHcC-CHHHHHHHhCCCHHHHHHHH--h-hCCHHHHHHHHHHHCCC
Confidence 467888885 99999999999999886655 2 23543 34666666544
No 227
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=31.33 E-value=23 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=22.7
Q ss_pred hhCccccccchhhhccChhhhhhhcc
Q 002305 230 DRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 230 ~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
+.|.+++.|||..+|||+-++...|.
T Consensus 19 ~~~~~~~~ela~~l~vs~~tvs~~l~ 44 (142)
T 1on2_A 19 EKGYARVSDIAEALAVHPSSVTKMVQ 44 (142)
T ss_dssp HHSSCCHHHHHHHHTSCHHHHHHHHH
T ss_pred hcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 56889999999999999999887763
No 228
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=31.32 E-value=26 Score=28.07 Aligned_cols=31 Identities=3% Similarity=0.219 Sum_probs=25.2
Q ss_pred HHHHHh-hCccccccchhhh-----ccChhhhhhhcc
Q 002305 225 LKKLID-RGKVNVKDIASDI-----GISPDLLKTTLA 255 (939)
Q Consensus 225 l~kli~-~gkv~~~d~~~~~-----gis~~~l~~~~~ 255 (939)
|..|+. .|.+++.||+.++ |||..|+--.|.
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 344554 6789999999999 999999888873
No 229
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=31.30 E-value=21 Score=37.50 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=42.8
Q ss_pred ccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccccccc
Q 002305 233 KVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (939)
|++++|||.+.|+|.-|+--+|+ ....++..+.||.+-.+..=|.+...
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr~rV~~aa~~lgY~pn~~ 51 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAV 51 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCHH
Confidence 58999999999999999999999 44689999999999998888876543
No 230
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.29 E-value=21 Score=28.28 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.0
Q ss_pred HhhCccccccchhhhccChhhhhhhcc
Q 002305 229 IDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 229 i~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
+-+|. +.++||.++|||+.++...+.
T Consensus 10 ~~~g~-s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 10 IDEGY-TNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HHTSC-CSHHHHHHTCSCHHHHHHHHH
T ss_pred HHcCC-CHHHHHHHhCCCHHHHHHHHH
Confidence 45675 899999999999999988763
No 231
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.07 E-value=16 Score=38.29 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=31.9
Q ss_pred CCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002305 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (939)
Q Consensus 705 ~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~ 754 (939)
-..|.+|.+--. +-+.|..|+..+|..|+.......+.-.|..|...
T Consensus 180 i~~C~iC~~iv~---~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLI---QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCS---SCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCcCcchhhHHh---CCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 466999998543 23799999999999998533222233456666543
No 232
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=31.00 E-value=41 Score=28.81 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.|...||++..+=..+..|+|..+|||+.+|..--. ....+.+.-.+|.+.|.
T Consensus 14 ~~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 67 (86)
T 3eus_A 14 YLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACE 67 (86)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 378889999998899999999999999988876554 23344444455655554
No 233
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.70 E-value=32 Score=30.91 Aligned_cols=35 Identities=23% Similarity=0.647 Sum_probs=28.7
Q ss_pred CCEEEecccCc-ccccccccCccCCCCceeccccccc
Q 002305 719 NPILICSGCKV-AVHLDCYRNAKESTGPWYCELCEEL 754 (939)
Q Consensus 719 N~iV~Cd~C~v-aVHq~CYGi~~ip~~~WlCd~C~~~ 754 (939)
-.||.|..|+. .+|..|..+. .....|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l~-~~~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSLR-PNSKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTCC-TTCSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhCCc-CCCCCEECCcCccc
Confidence 47999999985 6999997653 35778999999865
No 234
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=30.49 E-value=22 Score=31.37 Aligned_cols=31 Identities=6% Similarity=0.229 Sum_probs=25.7
Q ss_pred HHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 225 l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
+.+-+..+..+|.|||.++|||+..|...+.
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDLSSGYLSIMFK 41 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344445689999999999999999998887
No 235
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=29.94 E-value=20 Score=31.08 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
.|.-.||++..+-..+..++|..+|||+.+|..-..
T Consensus 4 ~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 4 TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 367788999999899999999999999999877664
No 236
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=29.91 E-value=31 Score=31.35 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhh
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSN 273 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~ 273 (939)
++--||+|...-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.=
T Consensus 24 ~g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v 77 (111)
T 3mlf_A 24 AMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNV 77 (111)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCc
Confidence 34457888888889999999999999999877665 334555666777777653
No 237
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=29.86 E-value=24 Score=32.35 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||+-|. .|..++.|||..+|||+-++...|
T Consensus 24 ~~IL~~L~-~~~~~~~eLa~~lgis~stvs~~L 55 (118)
T 2jsc_A 24 CRILVALL-DGVCYPGQLAAHLGLTRSNVSNHL 55 (118)
T ss_dssp HHHHHHHH-TTCCSTTTHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34677666 688999999999999999887666
No 238
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=29.59 E-value=28 Score=32.07 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=29.2
Q ss_pred CcchHHHHHHHHHh----hCccccccchhhhccChhhhhhhc
Q 002305 217 DALNFTLILKKLID----RGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 217 ~s~~~~~~l~kli~----~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
-+....-+|+.|+. .|.++++|||..+|||+-++...|
T Consensus 11 lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l 52 (139)
T 2x4h_A 11 LSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEV 52 (139)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHH
Confidence 34445566666654 578999999999999999887666
No 239
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=29.47 E-value=17 Score=32.57 Aligned_cols=33 Identities=27% Similarity=0.776 Sum_probs=26.1
Q ss_pred CCcCcccCCCC-CCCCC--EEEecccCccccccccc
Q 002305 705 PRSCDICRRSE-TILNP--ILICSGCKVAVHLDCYR 737 (939)
Q Consensus 705 ~~~CsVC~~~E-~~~N~--iV~Cd~C~vaVHq~CYG 737 (939)
..+|+.|...= ....+ -+.|..|++.+|..|..
T Consensus 35 PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~ 70 (84)
T 2row_A 35 PTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD 70 (84)
T ss_dssp CEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred CcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence 47899998642 12344 89999999999999986
No 240
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=29.45 E-value=19 Score=33.49 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=14.1
Q ss_pred hhC--ccccccchhhhccChhhhh
Q 002305 230 DRG--KVNVKDIASDIGISPDLLK 251 (939)
Q Consensus 230 ~~g--kv~~~d~~~~~gis~~~l~ 251 (939)
++| +++|.|||.+.|||.-+|-
T Consensus 27 ~~G~~~~tv~~Ia~~agvs~~t~Y 50 (177)
T 3kkc_A 27 ENDYSKITVQDVIGLANVGRSTFY 50 (177)
T ss_dssp TSCTTTCCHHHHHHHHCCCHHHHT
T ss_pred hCChhHhhHHHHHHHhCCcHhhHH
Confidence 445 6677777777777766554
No 241
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=29.08 E-value=22 Score=31.98 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=27.6
Q ss_pred HHHHHHHHhhCccccccchhhh-ccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDI-GISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~-gis~~~l~~~~ 254 (939)
..||.-|. .|..++.|||..+ |||+-+|...|
T Consensus 17 ~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L 49 (107)
T 2hzt_A 17 XVILXHLT-HGKKRTSELKRLMPNITQKMLTQQL 49 (107)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHH
Confidence 45777776 7999999999999 99999998776
No 242
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=29.06 E-value=22 Score=33.97 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCccccccchhhh-ccChhhhhhhcc
Q 002305 222 TLILKKLIDRGKVNVKDIASDI-GISPDLLKTTLA 255 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~-gis~~~l~~~~~ 255 (939)
.+||.-|. .|...+.||+..+ |||+-+|...|.
T Consensus 29 l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~ 62 (131)
T 4a5n_A 29 GILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLR 62 (131)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHH
Confidence 57888887 8999999999999 999999988874
No 243
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=28.97 E-value=31 Score=30.16 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhh----hhhhcc-ccccccchhHHHHHHhh
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDL----LKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~----l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
|+.-||++..+-..+..++|..+|||+.+ |..-.. ....+.+.-.+|.+.|.
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~ 58 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLK 58 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 34567888888889999999999999999 444443 33445555566766665
No 244
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=28.60 E-value=21 Score=34.38 Aligned_cols=30 Identities=27% Similarity=0.667 Sum_probs=25.6
Q ss_pred ccceeccCCCCeeeecCCcCcccccchhhhhcc
Q 002305 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 860 (939)
Q Consensus 828 l~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~a 860 (939)
..|.+|+.. |..+-|. .|...||..|....
T Consensus 58 ~~C~vC~dG-G~LlcCd--~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 58 EQCRWCAEG-GNLICCD--FCHNAFCKKCILRN 87 (129)
T ss_dssp SSCTTTCCC-SEEEECS--SSSCEEEHHHHHHH
T ss_pred CcCeecCCC-CeeEecC--CCchhhhHHHhCCC
Confidence 679999975 8888787 89999999999753
No 245
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=28.56 E-value=23 Score=32.07 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|.+.|.++++|||..+|||+-++...|
T Consensus 32 ~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l 64 (138)
T 3bpv_A 32 VACLLRIHREPGIKQDELATFFHVDKGTIARTL 64 (138)
T ss_dssp HHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888888899999999999999998876655
No 246
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=28.41 E-value=39 Score=30.98 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=40.2
Q ss_pred cchHHHHHHHHH-hhCccccccchhhhccChhhhhhhcc------c----------------cccccchhHHHHHHhhhc
Q 002305 218 ALNFTLILKKLI-DRGKVNVKDIASDIGISPDLLKTTLA------D----------------GTFASDLQCKLVKWLSNH 274 (939)
Q Consensus 218 s~~~~~~l~kli-~~gkv~~~d~~~~~gis~~~l~~~~~------~----------------~~~~~~~~~k~~~wl~~~ 274 (939)
|.+|-.-+-+++ +.|...+.+||.++|||+-+|-.-+. + ....|++-.-|+.|+...
T Consensus 9 t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E~~L~~Wi~~~ 88 (131)
T 1hlv_A 9 TFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGLLIAWFQQI 88 (131)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcchhhhccccchhhcccCCCCCHHHHHHHHHHHHHH
Confidence 445554444555 88988888999999999877744332 1 125677888889998765
Q ss_pred c
Q 002305 275 A 275 (939)
Q Consensus 275 ~ 275 (939)
-
T Consensus 89 ~ 89 (131)
T 1hlv_A 89 R 89 (131)
T ss_dssp G
T ss_pred H
Confidence 3
No 247
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=28.30 E-value=28 Score=32.48 Aligned_cols=30 Identities=7% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002305 225 LKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 225 l~kli~~g--kv~~~d~~~~~gis~~~l~~~~ 254 (939)
++-+.++| +++|.|||.+.|||.-+|-.-.
T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 18 DRLMAREGLNQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp HHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred HHHHHhcCcccCCHHHHHHHhCCCcchHHHHc
Confidence 34455667 7999999999999988775443
No 248
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=28.21 E-value=27 Score=31.09 Aligned_cols=39 Identities=23% Similarity=0.452 Sum_probs=31.6
Q ss_pred CcchHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002305 217 DALNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv-------~~~d~~~~~gis~~~l~~~~~ 255 (939)
-...++--|+..|..|.. ++.+||.++|+|..++..+|.
T Consensus 12 ~~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 12 GYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp CHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 345667778888877654 899999999999999999883
No 249
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.20 E-value=28 Score=28.51 Aligned_cols=33 Identities=6% Similarity=0.265 Sum_probs=26.7
Q ss_pred ccccccchhhhccChhhhhhhccccccccchhHHHHHHhhhcc
Q 002305 233 KVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHA 275 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~~~~ 275 (939)
-.+.+|||..+|||+.++...+ .++++.|....
T Consensus 25 g~s~~eIA~~lgis~~tV~~~~----------~ra~~kLr~~~ 57 (68)
T 2p7v_B 25 DYTLEEVGKQFDVTRERIRQIE----------AKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH----------HHHHHGGGSCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHH----------HHHHHHHHHHH
Confidence 4799999999999999998876 55667776553
No 250
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=27.87 E-value=25 Score=31.82 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|.+.|.++++|||..+||++-++...|
T Consensus 41 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 73 (140)
T 2nnn_A 41 WAALVRLGETGPCPQNQLGRLTAMDAATIKGVV 73 (140)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888888999999999999999998876655
No 251
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=27.36 E-value=26 Score=32.50 Aligned_cols=33 Identities=3% Similarity=0.305 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCc--cccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGK--VNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gk--v~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|.+.|. +++.+||..+|+|.-++...|
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L 63 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSV 63 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 568888998888 999999999999998887766
No 252
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=27.05 E-value=28 Score=31.56 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCccccccchhhh-ccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDI-GISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~-gis~~~l~~~~ 254 (939)
..||.-|-+ |..++.|||..+ |||+-+|...|
T Consensus 25 ~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L 57 (112)
T 1z7u_A 25 LSLMDELFQ-GTKRNGELMRALDGITQRVLTDRL 57 (112)
T ss_dssp HHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHH
Confidence 457777764 999999999999 99999988776
No 253
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=26.98 E-value=30 Score=32.61 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=22.4
Q ss_pred HHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002305 225 LKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 225 l~kli~~g--kv~~~d~~~~~gis~~~l~~~~ 254 (939)
++-+.++| +++|.|||.+.|||+-+|---.
T Consensus 24 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 55 (203)
T 3f1b_A 24 VDVFSDRGFHETSMDAIAAKAEISKPMLYLYY 55 (203)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred HHHHHHcCcccccHHHHHHHhCCchHHHHHHh
Confidence 34455667 7999999999999988775443
No 254
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=26.89 E-value=38 Score=37.41 Aligned_cols=36 Identities=22% Similarity=0.488 Sum_probs=29.3
Q ss_pred CCCCCcCcccCCCC-CCCCCEEEecccCccccccccc
Q 002305 702 KEHPRSCDICRRSE-TILNPILICSGCKVAVHLDCYR 737 (939)
Q Consensus 702 k~~~~~CsVC~~~E-~~~N~iV~Cd~C~vaVHq~CYG 737 (939)
-.....|.+|...= ...++-..|..|+..||..|.+
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 34568899999754 2467889999999999999986
No 255
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=26.88 E-value=27 Score=31.78 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.+++.|||..+|||+-++...|
T Consensus 34 ~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l 66 (142)
T 3bdd_A 34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRHL 66 (142)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888888999999999999999998886655
No 256
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.75 E-value=26 Score=31.02 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
..||+-+. +|+ +.++||.++|||+.++..-+.
T Consensus 35 ~~Vl~l~~-~G~-s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 35 CLILQEVE-KGF-TNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp HHHHHHHH-TTC-CHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHH-cCC-CHHHHHHHHCcCHHHHHHHHH
Confidence 45666555 785 899999999999999988774
No 257
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=26.74 E-value=18 Score=33.28 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=28.3
Q ss_pred CEEEecccCcccccccccCcc--------CC-CCceeccccccc
Q 002305 720 PILICSGCKVAVHLDCYRNAK--------ES-TGPWYCELCEEL 754 (939)
Q Consensus 720 ~iV~Cd~C~vaVHq~CYGi~~--------ip-~~~WlCd~C~~~ 754 (939)
.||.|+.|.--+|-.|-|+.. .| ...|.|..|...
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 378999999999999998863 24 457999999764
No 258
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=26.70 E-value=31 Score=32.42 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=20.3
Q ss_pred HHHHHHhhC--ccccccchhhhccChhhhhh
Q 002305 224 ILKKLIDRG--KVNVKDIASDIGISPDLLKT 252 (939)
Q Consensus 224 ~l~kli~~g--kv~~~d~~~~~gis~~~l~~ 252 (939)
.++-+.++| ++++.|||.+.|||.-+|--
T Consensus 19 a~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 49 (197)
T 3rd3_A 19 GYRIMAVKGFSGVGLNEILQSAGVPKGSFYH 49 (197)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHTT
T ss_pred HHHHHHHCCcccCCHHHHHHHhCCChhhHHH
Confidence 334455667 68888888888888777644
No 259
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=26.56 E-value=21 Score=31.98 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=23.4
Q ss_pred cchHHH-HHHHHHhhC------ccccccchhhhccChhhhh
Q 002305 218 ALNFTL-ILKKLIDRG------KVNVKDIASDIGISPDLLK 251 (939)
Q Consensus 218 s~~~~~-~l~kli~~g------kv~~~d~~~~~gis~~~l~ 251 (939)
|.+|-. +++.+.+.| -.++.+||.++|||+.+|.
T Consensus 8 s~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~ 48 (108)
T 2rn7_A 8 SPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLR 48 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHH
Confidence 455554 444444554 2799999999999988763
No 260
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=26.55 E-value=49 Score=27.82 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcccc--ccccchhHHHHHHhh
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADG--TFASDLQCKLVKWLS 272 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~--~~~~~~~~k~~~wl~ 272 (939)
.|+..||++..+- +..++|..+|||+.+|..-.... ..+.+.-.+|.+.|.
T Consensus 16 ~~g~~l~~~R~~~--sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~ 68 (86)
T 2ofy_A 16 RLGELLRSARGDM--SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLD 68 (86)
T ss_dssp HHHHHHHHHHTTS--CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC--CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 3667788877555 99999999999999987766532 234444455555553
No 261
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=26.48 E-value=33 Score=30.56 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhh
Q 002305 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKT 252 (939)
Q Consensus 218 s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~ 252 (939)
|.++-.-+-+|+.+| .++.+||..+|||+.++..
T Consensus 19 s~~~r~~i~~~~~~g-~s~~~ia~~lgis~~Tv~~ 52 (128)
T 1pdn_C 19 PNNIRLKIVEMAADG-IRPCVISRQLRVSHGCVSK 52 (128)
T ss_dssp CHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHH
Confidence 445555555677777 6999999999999876643
No 262
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.46 E-value=25 Score=29.86 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhh--Cccccccchhhh-----ccChhhhhhhc
Q 002305 220 NFTLILKKLIDR--GKVNVKDIASDI-----GISPDLLKTTL 254 (939)
Q Consensus 220 ~~~~~l~kli~~--gkv~~~d~~~~~-----gis~~~l~~~~ 254 (939)
-=..||+-|.+. |-+++.||+..+ |||..|+--+|
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L 59 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVL 59 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHH
Confidence 336788888876 689999999999 99999988777
No 263
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=26.45 E-value=27 Score=32.48 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCccccccchhhh--ccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDI--GISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~--gis~~~l~~~~ 254 (939)
--||.-|-+.|..++++||..+ |||+-++..-|
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL 50 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRL 50 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 4578888888999999999999 99998887665
No 264
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=26.23 E-value=19 Score=33.43 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=26.2
Q ss_pred HHHHHh-hCccccccchhhhccChhhhhhhcc
Q 002305 225 LKKLID-RGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 225 l~kli~-~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
+..+|+ ....+|.+||.++|+|+-.|.....
T Consensus 84 a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk 115 (133)
T 1u8b_A 84 ACRLLEQETPVTLEALADQVAMSPFHLHRLFK 115 (133)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 456777 7889999999999999988887764
No 265
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=26.05 E-value=23 Score=32.12 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.++++|||..+|||+-++...|
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l 68 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMI 68 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHH
Confidence 568888888999999999999999988776555
No 266
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=25.98 E-value=26 Score=37.48 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=41.0
Q ss_pred CccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccc-ccc
Q 002305 232 GKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYL-GGL 280 (939)
Q Consensus 232 gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~-~~~ 280 (939)
.+++++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|. +..
T Consensus 8 ~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~ 58 (366)
T 3h5t_A 8 QYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDP 58 (366)
T ss_dssp CTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC-----
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCH
Confidence 479999999999999999999998 4568999999999999988886 543
No 267
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=25.91 E-value=48 Score=32.43 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=40.9
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhccc-c-ccccchhHHHHHHhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-G-TFASDLQCKLVKWLS 272 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~-~-~~~~~~~~k~~~wl~ 272 (939)
..|+..||+|..+-..+.+|+|..+|||..+|..-... . ..+.+.-.||.+-|.
T Consensus 9 ~~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~ 64 (198)
T 2bnm_A 9 TGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLG 64 (198)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 46788999999999999999999999999988776652 2 344444556665554
No 268
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=25.78 E-value=29 Score=31.39 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=27.0
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
..||.-|.+ |..++.|||..+|||+-++...|.
T Consensus 35 ~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~ 67 (119)
T 2lkp_A 35 LMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLR 67 (119)
T ss_dssp HHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346666666 889999999999999999877663
No 269
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.39 E-value=29 Score=31.70 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.+++.|||..+|||+-++...|
T Consensus 36 ~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l 68 (145)
T 2a61_A 36 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGLV 68 (145)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHH
Confidence 567888888899999999999999998876655
No 270
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=25.36 E-value=56 Score=27.12 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhccccc-cccchhHHHHHHhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGT-FASDLQCKLVKWLSNH 274 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~~~-~~~~~~~k~~~wl~~~ 274 (939)
.--||.|-.+=..+-+++|..+|||+.++..--.... -++++ .+|++.|..+
T Consensus 13 g~~lr~~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~-~~l~~~l~~~ 65 (73)
T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPST-IKLLRVLDKH 65 (73)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHH-HHHHHHHCCC
Confidence 4457888888889999999999999998877665322 23333 3777777644
No 271
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=25.29 E-value=34 Score=32.44 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=4.2
Q ss_pred HHHHHHHHcc
Q 002305 601 CELREAKKQG 610 (939)
Q Consensus 601 ~~~rea~k~~ 610 (939)
.-+.++.+.|
T Consensus 137 ~~l~~~~~~g 146 (202)
T 3lwj_A 137 RNIEYGIKKG 146 (202)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 3334444444
No 272
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.08 E-value=34 Score=32.22 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=4.8
Q ss_pred HHHHHHHHHcc
Q 002305 600 LCELREAKKQG 610 (939)
Q Consensus 600 L~~~rea~k~~ 610 (939)
..-++++.+.|
T Consensus 132 ~~~l~~~~~~g 142 (206)
T 3dew_A 132 AESIEAGMTRG 142 (206)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhhcC
Confidence 33344444444
No 273
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=24.99 E-value=28 Score=31.64 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|.+.|.+++.|||..+|||+-++...|
T Consensus 39 ~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l 71 (142)
T 2fbi_A 39 WRVIRILRQQGEMESYQLANQACILRPSMTGVL 71 (142)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHH
Confidence 568888888999999999999999998876555
No 274
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=24.97 E-value=28 Score=31.81 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.+++.|||..+|||+-++...|
T Consensus 32 ~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l 64 (144)
T 1lj9_A 32 YLYLVRVCENPGIIQEKIAELIKVDRTTAARAI 64 (144)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHH
Confidence 568888888999999999999999998877655
No 275
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=24.97 E-value=36 Score=32.06 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002305 219 LNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv-------~~~d~~~~~gis~~~l~~~~~ 255 (939)
..+.-.|+..|..|+. +..++|.++|||.-++..+|.
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~ 50 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLT 50 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3466778999999976 788999999999999999885
No 276
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=24.94 E-value=34 Score=32.32 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=22.5
Q ss_pred HHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002305 225 LKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 225 l~kli~~g--kv~~~d~~~~~gis~~~l~~~~ 254 (939)
++-+.++| ++++.|||.+.|||.-+|-.-.
T Consensus 21 ~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F 52 (203)
T 3b81_A 21 WDIFIANGYENTTLAFIINKLGISKGALYHYF 52 (203)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTC
T ss_pred HHHHHHcCcccCcHHHHHHHhCCCchhHHHHc
Confidence 34455677 7899999999999988775444
No 277
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.92 E-value=36 Score=31.08 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002305 218 ALNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 218 s~~~~~~l~kli~~gkv-------~~~d~~~~~gis~~~l~~~~~ 255 (939)
...+.--|+..|..|.. ++.++|.++|||.-++..+|.
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~ 55 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQ 55 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34577789999999887 678999999999999999985
No 278
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=24.75 E-value=30 Score=31.85 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 75 (148)
T 3nrv_A 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568889999999999999999999998887665
No 279
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=24.71 E-value=16 Score=38.83 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred hCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccccccc
Q 002305 231 RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (939)
Q Consensus 231 ~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (939)
..+++++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|.+...
T Consensus 4 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~ 55 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVPNQL 55 (333)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCHH
Confidence 4679999999999999999999998 56678889999988888887766543
No 280
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.63 E-value=29 Score=31.63 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCccc--cccchhhh-ccChhhhhhhcc
Q 002305 222 TLILKKLIDRGKVN--VKDIASDI-GISPDLLKTTLA 255 (939)
Q Consensus 222 ~~~l~kli~~gkv~--~~d~~~~~-gis~~~l~~~~~ 255 (939)
..||.-|- .|... +.|||..+ |||+-+|...|.
T Consensus 30 l~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~ 65 (111)
T 3df8_A 30 MLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIK 65 (111)
T ss_dssp HHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHH
Confidence 46788776 78877 99999999 999999987773
No 281
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=24.63 E-value=36 Score=31.79 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred cchHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002305 218 ALNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 218 s~~~~~~l~kli~~gkv-------~~~d~~~~~gis~~~l~~~~~ 255 (939)
..-++-.|+..|..|.. ++.++|.++|+|.-++..+|.
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~ 57 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYK 57 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 45577889999999875 899999999999999999885
No 282
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=24.33 E-value=57 Score=30.28 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=40.6
Q ss_pred chHHHHHHHHHhhCccccccchhhhccChhhhhhhccc-c-ccccchhHHHHHHhh
Q 002305 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-G-TFASDLQCKLVKWLS 272 (939)
Q Consensus 219 ~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~~-~-~~~~~~~~k~~~wl~ 272 (939)
..|+..||+|..+-..+-.++|..+|||+.+|-.-... . .++.+.-.+|.+-|.
T Consensus 39 ~~lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lg 94 (120)
T 2o38_A 39 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALD 94 (120)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 35677899999999999999999999999988776642 2 344455556665554
No 283
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=24.30 E-value=44 Score=39.01 Aligned_cols=37 Identities=22% Similarity=0.530 Sum_probs=29.7
Q ss_pred CCCCcCcccCCCC-CCCCCEEEecccCcccccccccCc
Q 002305 703 EHPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRNA 739 (939)
Q Consensus 703 ~~~~~CsVC~~~E-~~~N~iV~Cd~C~vaVHq~CYGi~ 739 (939)
.....|.+|...= ....+-+.|..|++.||..|.+..
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v 564 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV 564 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhcC
Confidence 4568899998752 335688999999999999998743
No 284
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=24.24 E-value=36 Score=32.47 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=22.4
Q ss_pred HHHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002305 224 ILKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 224 ~l~kli~~g--kv~~~d~~~~~gis~~~l~~~~ 254 (939)
.++-+.++| .|+|.|||.+.|||.-+|-.-.
T Consensus 40 a~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 72 (218)
T 3dcf_A 40 ATELFREKGYYATSLDDIADRIGFTKPAIYYYF 72 (218)
T ss_dssp HHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHc
Confidence 344455667 7899999999999987775433
No 285
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=24.16 E-value=36 Score=31.81 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHhhC--ccccccchhhhccChhhhhhh
Q 002305 226 KKLIDRG--KVNVKDIASDIGISPDLLKTT 253 (939)
Q Consensus 226 ~kli~~g--kv~~~d~~~~~gis~~~l~~~ 253 (939)
+=+.++| ++++.|||.+.|||.-+|-.-
T Consensus 21 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 50 (196)
T 3col_A 21 AIILAEGPAGVSTTKVAKRVGIAQSNVYLY 50 (196)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHHTT
T ss_pred HHHHhcCcccCCHHHHHHHhCCcHHHHHHH
Confidence 3344556 688888888888887766543
No 286
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=24.10 E-value=28 Score=32.13 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.+++.|||..+||++-++...|
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l 75 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRIL 75 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888888899999999999999998876655
No 287
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=24.07 E-value=28 Score=32.30 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=25.2
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.||+-|. .|..++.|||..+|||+-++...|
T Consensus 50 ~IL~~L~-~~~~s~~ela~~lgis~stvs~~L 80 (122)
T 1r1t_A 50 RLLSLLA-RSELCVGDLAQAIGVSESAVSHQL 80 (122)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3566665 588999999999999998887665
No 288
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=24.03 E-value=28 Score=32.39 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-| +.|.++++|||..+|+++-++...|
T Consensus 41 ~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l 72 (151)
T 3kp7_A 41 SHVLNML-SIEALTVGQITEKQGVNKAAVSRRV 72 (151)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHH
T ss_pred HHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 5688888 9999999999999999998776554
No 289
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=24.01 E-value=32 Score=32.84 Aligned_cols=33 Identities=18% Similarity=0.462 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
.+||+-|. .|..++.|||..+|||+-+|...|.
T Consensus 27 l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~ 59 (146)
T 2f2e_A 27 MLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLR 59 (146)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 46888886 6999999999999999999987773
No 290
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=24.00 E-value=31 Score=34.24 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhCc-cccccchhhhccChhhhhhhc
Q 002305 221 FTLILKKLIDRGK-VNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 221 ~~~~l~kli~~gk-v~~~d~~~~~gis~~~l~~~~ 254 (939)
..-||+-|.+.|. ++++|||.++|+|.-++..-|
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi 57 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDI 57 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3457777876554 999999999999999987766
No 291
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=23.94 E-value=27 Score=32.07 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.| ++++|||..+|||+-++...|
T Consensus 41 ~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l 72 (146)
T 3tgn_A 41 EHILMLLSEES-LTNSELARRLNVSQAAVTKAI 72 (146)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHH
Confidence 67888888888 999999999999999887666
No 292
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=23.89 E-value=37 Score=32.31 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=17.4
Q ss_pred HHhhC--ccccccchhhhccChhhhhhh
Q 002305 228 LIDRG--KVNVKDIASDIGISPDLLKTT 253 (939)
Q Consensus 228 li~~g--kv~~~d~~~~~gis~~~l~~~ 253 (939)
+.++| ++++.|||.+.|||.-+|-.-
T Consensus 31 ~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 31 FSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHcCcchhhHHHHHHHHCCChhHHHHh
Confidence 44556 677777777777777666443
No 293
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.68 E-value=39 Score=31.25 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=24.1
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
.|+. +.-.|. +.++||..+|||+.++...+
T Consensus 116 ~v~~-~~~~g~-s~~EIA~~lgis~~tV~~~~ 145 (164)
T 3mzy_A 116 EVLT-YLIRGY-SYREIATILSKNLKSIDNTI 145 (164)
T ss_dssp HHHH-HHTTTC-CHHHHHHHHTCCHHHHHHHH
T ss_pred HHHH-HHHcCC-CHHHHHHHHCCCHHHHHHHH
Confidence 3455 444554 99999999999999999887
No 294
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.58 E-value=49 Score=26.60 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.0
Q ss_pred ccccccchhhhccChhhhhhhc
Q 002305 233 KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l~~~~ 254 (939)
..+.++||..+|||+.++...+
T Consensus 31 g~s~~eIA~~lgis~~tv~~~~ 52 (70)
T 2o8x_A 31 GLSYADAAAVCGCPVGTIRSRV 52 (70)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 3799999999999999998877
No 295
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=23.47 E-value=28 Score=32.26 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|.+.|.+++.|||..+|||+-++...|
T Consensus 40 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l 72 (155)
T 1s3j_A 40 LFVLASLKKHGSLKVSEIAERMEVKPSAVTLMA 72 (155)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 567888888899999999999999998887665
No 296
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=23.27 E-value=30 Score=31.79 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=26.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 40 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 72 (142)
T 3ech_A 40 VHVLKLIDEQRGLNLQDLGRQMCRDKALITRKI 72 (142)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHC---CHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 678888889999999999999999998887665
No 297
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.23 E-value=40 Score=31.35 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=33.5
Q ss_pred CcchHHHHHHHHHhhCcc-------ccccchhhhccChhhhhhhcc
Q 002305 217 DALNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 217 ~s~~~~~~l~kli~~gkv-------~~~d~~~~~gis~~~l~~~~~ 255 (939)
-...+.-.|+..|..|.. ++.++|.++|||.-++..+|.
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~ 59 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 345677889999999877 688999999999999999985
No 298
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=23.15 E-value=40 Score=32.09 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=19.3
Q ss_pred HHhhC--ccccccchhhhccChhhhhhhc
Q 002305 228 LIDRG--KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 228 li~~g--kv~~~d~~~~~gis~~~l~~~~ 254 (939)
+.++| +++|.|||.+.|||.-+|-.-.
T Consensus 26 f~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 54 (195)
T 2iu5_A 26 MQSNAYHQISVSDIMQTAKIRRQTFYNYF 54 (195)
T ss_dssp HHHSCGGGCCHHHHHHHHTSCGGGGGGTC
T ss_pred HHhCCCCeeCHHHHHHHhCCCHHHHHHHc
Confidence 33566 7888888888888887765433
No 299
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=23.12 E-value=28 Score=31.89 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-..|.++++|||..+|||+-++...|
T Consensus 40 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l 72 (142)
T 2bv6_A 40 FLVLTILWDESPVNVKKVVTELALDTGTVSPLL 72 (142)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHH
Confidence 567888888899999999999999988776554
No 300
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=22.96 E-value=43 Score=29.08 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=26.9
Q ss_pred HHHHHHHHhhC-ccccccchhhhccChhh-hhhhc
Q 002305 222 TLILKKLIDRG-KVNVKDIASDIGISPDL-LKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~g-kv~~~d~~~~~gis~~~-l~~~~ 254 (939)
..+|.-|-..| .++++|||..+||++-+ +...|
T Consensus 18 l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l 52 (95)
T 2pg4_A 18 LPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLK 52 (95)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHH
Confidence 44666667788 89999999999999998 76655
No 301
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=22.82 E-value=38 Score=36.65 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
...||+.|-+.+.++++++|.++|||..++..-|
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l 40 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGMSRAAINKHI 40 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 3568888888889999999999999999987766
No 302
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.78 E-value=36 Score=31.72 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=17.0
Q ss_pred HHHhhC--ccccccchhhhccChhhhhhh
Q 002305 227 KLIDRG--KVNVKDIASDIGISPDLLKTT 253 (939)
Q Consensus 227 kli~~g--kv~~~d~~~~~gis~~~l~~~ 253 (939)
-+.++| ++++.|||.+.|||.-+|-.-
T Consensus 18 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 46 (191)
T 1sgm_A 18 LSQLQGYHATGLNQIVKESGAPKGSLYHF 46 (191)
T ss_dssp HHHHHCTTTCCHHHHHHHHCCCSCHHHHS
T ss_pred HHHHcCccccCHHHHHHHHCCCchhHHHH
Confidence 344455 577777777777776665443
No 303
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.78 E-value=52 Score=30.01 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 218 s~~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
|.++-..+..|.++| .++.+||..+|||..++...+
T Consensus 8 s~~~r~~i~~~~~~G-~s~~~ia~~lgis~~Tv~r~~ 43 (141)
T 1u78_A 8 SDTERAQLDVMKLLN-VSLHEMSRKISRSRHCIRVYL 43 (141)
T ss_dssp CHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 345555555677888 699999999999998876544
No 304
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=22.61 E-value=42 Score=31.34 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=17.8
Q ss_pred HHhhC--ccccccchhhhccChhhhhhhc
Q 002305 228 LIDRG--KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 228 li~~g--kv~~~d~~~~~gis~~~l~~~~ 254 (939)
+.++| .++|.|||.+.|||+-+|-.-.
T Consensus 22 ~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 50 (195)
T 3ppb_A 22 FVSQGFHGTSTATIAREAGVATGTLFHHF 50 (195)
T ss_dssp HHHTCSTTSCHHHHHHHHTCCHHHHHHHC
T ss_pred HHhcCcccCCHHHHHHHhCCChhHHHHHc
Confidence 33445 6777778877777777665433
No 305
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=22.54 E-value=50 Score=31.46 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhh
Q 002305 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (939)
Q Consensus 224 ~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~ 272 (939)
.|++|..+-..+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 72 ~L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lg 121 (141)
T 3kxa_A 72 TFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALG 121 (141)
T ss_dssp CHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 36777778889999999999999999887776 34555566667777664
No 306
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=22.54 E-value=62 Score=32.11 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhcc-ccccccchhHHHHH
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVK 269 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~ 269 (939)
+...|.+.-.+-..+-.+||..||+|+.-+.+++. ..+++++.--||.+
T Consensus 14 ~~~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~ 63 (156)
T 1dw9_A 14 LADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGA 63 (156)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34444444456678999999999999999999887 55566655555554
No 307
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=22.52 E-value=32 Score=31.95 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
=..||.-|-+.|.++++|||..+|||+-++...|
T Consensus 49 ~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l 82 (153)
T 2pex_A 49 QYLVMLVLWETDERSVSEIGERLYLDSATLTPLL 82 (153)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHH
Confidence 3568888888999999999999999998887655
No 308
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=22.50 E-value=36 Score=31.78 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|.+.|.+++.|||..+||++-++...|
T Consensus 47 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 79 (154)
T 2eth_A 47 LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVV 79 (154)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888889999999999999999998776554
No 309
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=22.49 E-value=35 Score=31.98 Aligned_cols=33 Identities=3% Similarity=0.027 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|.+.|.++++|||..+||++-++...|
T Consensus 52 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 84 (162)
T 2fa5_A 52 WRVITILALYPGSSASEVSDRTAMDKVAVSRAV 84 (162)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 567888888999999999999999998876655
No 310
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=22.37 E-value=41 Score=30.46 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.+++++||..+||++-++...|
T Consensus 37 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l 69 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKKVLSVDLGALTRML 69 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHH
Confidence 567888888899999999999999998887655
No 311
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=22.34 E-value=41 Score=31.44 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=14.8
Q ss_pred HhhC--ccccccchhhhccChhhhh
Q 002305 229 IDRG--KVNVKDIASDIGISPDLLK 251 (939)
Q Consensus 229 i~~g--kv~~~d~~~~~gis~~~l~ 251 (939)
.++| +++|.|||.+.|||.-+|-
T Consensus 22 ~~~G~~~~t~~~Ia~~agvs~~t~Y 46 (183)
T 1zk8_A 22 DANGVQEVTLASLAQTLGVRSPSLY 46 (183)
T ss_dssp HHHCGGGCCHHHHHHHHTSCHHHHT
T ss_pred HhcCccccCHHHHHHHcCCCchHHH
Confidence 3455 6677777777777766654
No 312
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=22.05 E-value=19 Score=38.07 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred CccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhccccccc
Q 002305 232 GKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGL 280 (939)
Q Consensus 232 gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~ 280 (939)
.+|+++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|.+..
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~ 52 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAYVPSR 52 (339)
T ss_dssp --------------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 479999999999999999999998 4567888888988888777776543
No 313
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=21.97 E-value=33 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 48 ~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l 80 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATLLGVQPSATGRMV 80 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHH
Confidence 567888888899999999999999999887655
No 314
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=21.87 E-value=19 Score=37.90 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred CccccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhccccccc
Q 002305 232 GKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGL 280 (939)
Q Consensus 232 gkv~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~ 280 (939)
+|++++|||.+.|+|.-|+--+|+ ....++....||.+-.+..-|.+..
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn~ 53 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNA 53 (332)
T ss_dssp --------------------------------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 579999999999999999999998 3467888888888877777676543
No 315
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=21.74 E-value=34 Score=30.68 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCccccccchhhh-ccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDI-GISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~-gis~~~l~~~~ 254 (939)
..||.-|. .|..++.|||..+ |||+-+|...|
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L 60 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDEL 60 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHH
Confidence 45777776 7999999999999 59999988776
No 316
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=21.71 E-value=33 Score=32.59 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=9.6
Q ss_pred ccccccchhhhccChhhh
Q 002305 233 KVNVKDIASDIGISPDLL 250 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l 250 (939)
.+++.|||.+.|||.-+|
T Consensus 34 ~~t~~~Ia~~agvs~~t~ 51 (215)
T 3e7q_A 34 GASVRKICAEAGVSVGLI 51 (215)
T ss_dssp HCCHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHhCCCHHHH
Confidence 455555555555555444
No 317
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.67 E-value=39 Score=30.95 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=28.6
Q ss_pred HHHHHHHHh-hCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLID-RGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~-~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-. .|.+++++||..+|||+-++...|
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l 71 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALL 71 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHH
Confidence 468888888 899999999999999998886655
No 318
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=21.66 E-value=34 Score=31.75 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=28.1
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.+++.|||..+||++-++...|
T Consensus 44 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 76 (154)
T 2qww_A 44 LAMINVIYSTPGISVADLTKRLIITGSSAAANV 76 (154)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 467888888999999999999999988776544
No 319
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=21.61 E-value=38 Score=31.16 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|.+.|.+++.|||..+||++-++...|
T Consensus 45 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 77 (150)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNKMYLACSTTTDLV 77 (150)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHH
Confidence 568888888999999999999999998887655
No 320
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.56 E-value=44 Score=33.11 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 225 l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
++=+-++|.+++.+||.++|||+-+|---.
T Consensus 21 ~~l~~~~G~~s~~~IA~~aGvs~~tlY~hF 50 (213)
T 2g7g_A 21 LELVDRDGDFRMPDLARHLNVQVSSIYHHA 50 (213)
T ss_dssp HHHHHHHSSCCHHHHHHHTTSCHHHHHTTS
T ss_pred HHHHHHcCCCCHHHHHHHhCCCHhHHHHHc
Confidence 344455799999999999999998875443
No 321
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=21.51 E-value=45 Score=31.41 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=24.6
Q ss_pred HHHHH-hhCccccccchhhhccChhhhhhhcc
Q 002305 225 LKKLI-DRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 225 l~kli-~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
|..+| +.|.+++.+||..+|||+-++...|.
T Consensus 45 i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~ 76 (155)
T 2h09_A 45 ISDLIREVGEARQVDMAARLGVSQPTVAKMLK 76 (155)
T ss_dssp HHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHH
Confidence 33344 45889999999999999999887763
No 322
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=21.50 E-value=33 Score=31.49 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
-..||.-|-..|.+++.|||..+||++-++...|
T Consensus 42 ~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l 75 (147)
T 1z91_A 42 QYLALLLLWEHETLTVKKMGEQLYLDSGTLTPML 75 (147)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHH
Confidence 3568888888999999999999999998876655
No 323
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.49 E-value=20 Score=38.29 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=0.0
Q ss_pred hCccccccchhhhccChhhhhhhccc-cccccchhHHHHHHhhhccccccc
Q 002305 231 RGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLSNHAYLGGL 280 (939)
Q Consensus 231 ~gkv~~~d~~~~~gis~~~l~~~~~~-~~~~~~~~~k~~~wl~~~~~~~~~ 280 (939)
.++++++|||.+.|+|.-|+--+|+. ...++....||.+-.+..-|.+..
T Consensus 6 ~~~~ti~dvA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~aa~~lgY~pn~ 56 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRANA 56 (348)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 35689999999999999999999983 467888888888877777676543
No 324
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=21.43 E-value=35 Score=32.05 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 87 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIFAVVEQSTLSRAL 87 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHH
Confidence 567888888999999999999999988876555
No 325
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=21.41 E-value=45 Score=31.31 Aligned_cols=30 Identities=10% Similarity=0.350 Sum_probs=21.2
Q ss_pred HHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002305 225 LKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 225 l~kli~~g--kv~~~d~~~~~gis~~~l~~~~ 254 (939)
++-+.++| +++|.|||.+.|||.-+|-.-.
T Consensus 21 ~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 52 (196)
T 3he0_A 21 EQLIAESGFQGLSMQKLANEAGVAAGTIYRYF 52 (196)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHhCcccCCHHHHHHHhCCCcchHHHhc
Confidence 33344556 7888999999999887775443
No 326
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=21.38 E-value=44 Score=31.88 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=20.6
Q ss_pred HHHHHHhhC--ccccccchhhhccChhhhhhh
Q 002305 224 ILKKLIDRG--KVNVKDIASDIGISPDLLKTT 253 (939)
Q Consensus 224 ~l~kli~~g--kv~~~d~~~~~gis~~~l~~~ 253 (939)
.++-+.++| .+++.|||.+.|||.-+|---
T Consensus 35 A~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 66 (217)
T 3mvp_A 35 AKDLFSDKTYFNVTTNEIAKKADVSVGTLYAY 66 (217)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCccccCHHHHHHHhCCChhHHHHH
Confidence 334455667 788888888888887776543
No 327
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=21.18 E-value=45 Score=31.73 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=15.9
Q ss_pred HHhhC--ccccccchhhhccChhhhhh
Q 002305 228 LIDRG--KVNVKDIASDIGISPDLLKT 252 (939)
Q Consensus 228 li~~g--kv~~~d~~~~~gis~~~l~~ 252 (939)
+.++| ++++.|||.+.|||.-+|--
T Consensus 27 ~~~~G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 27 VLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHcCCccCCHHHHHHHhCCChHHHHH
Confidence 33555 57777777777777666543
No 328
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=21.17 E-value=45 Score=31.65 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=15.1
Q ss_pred HHhhC--ccccccchhhhccChhhhhh
Q 002305 228 LIDRG--KVNVKDIASDIGISPDLLKT 252 (939)
Q Consensus 228 li~~g--kv~~~d~~~~~gis~~~l~~ 252 (939)
+.++| ++++.|||.+.|||.-+|--
T Consensus 29 f~~~G~~~~t~~~Ia~~agvs~~t~Y~ 55 (213)
T 2qtq_A 29 MREGDVVDISLSELSLRSGLNSALVKY 55 (213)
T ss_dssp HHHHTSSCCCHHHHHHHHCCCHHHHHH
T ss_pred HHHcCcccccHHHHHHHhCCChhhHhH
Confidence 34455 56667777777776655543
No 329
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=21.16 E-value=38 Score=35.71 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=41.9
Q ss_pred cccccchhhhccChhhhhhhcc-ccccccchhHHHHHHhhhcccccccc
Q 002305 234 VNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (939)
Q Consensus 234 v~~~d~~~~~gis~~~l~~~~~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (939)
++++|||.+.|+|.-|+--+|+ ....++....||.+-.+..=|.+...
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~~~~vs~~tr~rV~~~a~~lgY~pn~~ 49 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAV 49 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCCHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCcCCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 5789999999999999999999 45689999999999999888876543
No 330
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=21.15 E-value=14 Score=33.49 Aligned_cols=50 Identities=22% Similarity=0.533 Sum_probs=37.7
Q ss_pred CCCcCcccCCCC--C-CCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002305 704 HPRSCDICRRSE--T-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (939)
Q Consensus 704 ~~~~CsVC~~~E--~-~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~ 754 (939)
+...|.||.+.- + .++..+-|..|.+.|-..||-.. ..++.-.|.+|...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE-rkeG~q~CpqCktr 67 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE-RREGTQNCPQCKTR 67 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH-HHTSCSSCTTTCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH-HhccCccccccCCc
Confidence 346899999852 3 35688899999999999999532 34666778888764
No 331
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=21.12 E-value=46 Score=31.36 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=18.0
Q ss_pred HHHHhhC--ccccccchhhhccChhhhhhh
Q 002305 226 KKLIDRG--KVNVKDIASDIGISPDLLKTT 253 (939)
Q Consensus 226 ~kli~~g--kv~~~d~~~~~gis~~~l~~~ 253 (939)
+-+.++| ++++.|||.+.|||.-+|---
T Consensus 28 ~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 57 (206)
T 3kz9_A 28 EVFARRGIGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp HHHHHSCCSSCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHhcCcccccHHHHHHHhCCCHHHHHHH
Confidence 3344556 677777777777777665433
No 332
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=20.97 E-value=46 Score=31.21 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=15.3
Q ss_pred HHhhC--ccccccchhhhccChhhhhh
Q 002305 228 LIDRG--KVNVKDIASDIGISPDLLKT 252 (939)
Q Consensus 228 li~~g--kv~~~d~~~~~gis~~~l~~ 252 (939)
+.++| .+++.|||.+.|||.-+|-.
T Consensus 20 ~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 20 FNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 44455 56677777777777665543
No 333
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=20.97 E-value=36 Score=36.58 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCCCCcchHH-------HHHHHHHhhC-ccccccchhhhccChhhhhhhcc
Q 002305 212 DVNPSDALNFT-------LILKKLIDRG-KVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 212 ~~~~~~s~~~~-------~~l~kli~~g-kv~~~d~~~~~gis~~~l~~~~~ 255 (939)
+.-.||-|-++ .|++-|.+.| .++++||+...||.++-+..||.
T Consensus 179 EkPLSdLG~~sY~~YW~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~ 230 (276)
T 3to7_A 179 EKPLSDLGLLSYRAYWSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAK 230 (276)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHH
Confidence 44577766654 5788888876 69999999999999999999996
No 334
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=20.88 E-value=39 Score=31.44 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l 76 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRHLDLSSNTLTPML 76 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 678888889999999999999999998887655
No 335
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=20.87 E-value=33 Score=35.93 Aligned_cols=31 Identities=23% Similarity=0.615 Sum_probs=26.5
Q ss_pred CccceeccCCCCeeeecCCcCcccccchhhhhc
Q 002305 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (939)
Q Consensus 827 kl~C~iC~~~~GA~IqC~~~~C~~~FHv~CA~~ 859 (939)
...|.+|+.-....+.|. +|...||..|...
T Consensus 180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~ 210 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAK 210 (238)
T ss_dssp CCBCTTTCSBCSSCEECS--SSCCEECHHHHHH
T ss_pred CCcCcchhhHHhCCcccC--ccChHHHHHHHHH
Confidence 478999999766678998 5999999999955
No 336
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=20.79 E-value=44 Score=33.04 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=24.7
Q ss_pred HHHHHHHhhC--ccccccchhhhccChhhhhhhc
Q 002305 223 LILKKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 223 ~~l~kli~~g--kv~~~d~~~~~gis~~~l~~~~ 254 (939)
..++-+.++| .+++.|||.+.|||.-+|-.-.
T Consensus 52 aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F 85 (236)
T 3q0w_A 52 TAENLLEDRPLADISVDDLAKGAGISRPTFYFYF 85 (236)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHC
Confidence 3444556778 8999999999999998875544
No 337
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=20.79 E-value=33 Score=33.62 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhCccccccchhhhc--------------cChhhhhhhcc
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIG--------------ISPDLLKTTLA 255 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~g--------------is~~~l~~~~~ 255 (939)
-++-+|+++|-+|.+.+.++|.+.| +|.-++..+|.
T Consensus 54 ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~ 103 (150)
T 2v7f_A 54 RVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQ 103 (150)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHH
Confidence 5688999999999999999999999 99999999883
No 338
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=20.78 E-value=49 Score=37.94 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
-..||+.|++.+.++++++|..+|+|.-|+..-+
T Consensus 20 ~~~IL~~L~~~~~it~~eLA~~L~VS~RTIr~dI 53 (485)
T 3sqn_A 20 QIRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDL 53 (485)
T ss_dssp HHHHHHHHHHCCSCBCGGGHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 4678999999999999999999999999999877
No 339
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=20.75 E-value=52 Score=29.19 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=22.4
Q ss_pred CccccccchhhhccChhhhhhhcc
Q 002305 232 GKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 232 gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
..+++.+||.++|||+..|...+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk 42 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFR 42 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 679999999999999999998886
No 340
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=20.65 E-value=55 Score=28.28 Aligned_cols=32 Identities=6% Similarity=0.205 Sum_probs=25.5
Q ss_pred ccccccchhhhccChhhhhhhccccccccchhHHHHHHhhhc
Q 002305 233 KVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNH 274 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l~~~~~~~~~~~~~~~k~~~wl~~~ 274 (939)
-.+.++||..+|||+.++...+ .+.+++|...
T Consensus 38 ~~s~~EIA~~lgis~~tV~~~~----------~ra~~kLr~~ 69 (87)
T 1tty_A 38 PKTLEEVGQYFNVTRERIRQIE----------VKALRKLRHP 69 (87)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH----------HHHHHHHBTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH----------HHHHHHHHHH
Confidence 4799999999999999998866 4555666544
No 341
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=20.64 E-value=47 Score=31.55 Aligned_cols=7 Identities=0% Similarity=0.050 Sum_probs=2.7
Q ss_pred HHHHHcc
Q 002305 604 REAKKQG 610 (939)
Q Consensus 604 rea~k~~ 610 (939)
.++.++|
T Consensus 149 ~~~~~~g 155 (220)
T 3lhq_A 149 KHCINAK 155 (220)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 3333443
No 342
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.62 E-value=47 Score=31.78 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=15.8
Q ss_pred HHHhhC--ccccccchhhhccChhhhhh
Q 002305 227 KLIDRG--KVNVKDIASDIGISPDLLKT 252 (939)
Q Consensus 227 kli~~g--kv~~~d~~~~~gis~~~l~~ 252 (939)
-+.++| .+++.|||.+.|||.-+|-.
T Consensus 23 lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 50 (216)
T 3f0c_A 23 RFAHYGLCKTTMNEIASDVGMGKASLYY 50 (216)
T ss_dssp HHHHHCSSSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHcCCCcCCHHHHHHHhCCCHHHHHH
Confidence 344555 56667777777776665543
No 343
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=20.54 E-value=38 Score=28.62 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=22.0
Q ss_pred HHHHHHhhCccccccchhhhccChhhhhh
Q 002305 224 ILKKLIDRGKVNVKDIASDIGISPDLLKT 252 (939)
Q Consensus 224 ~l~kli~~gkv~~~d~~~~~gis~~~l~~ 252 (939)
-|++|++.+ +..++|..+|||.-++-.
T Consensus 6 ~Lk~l~~~~--sq~~~A~~Lgvsq~aVS~ 32 (65)
T 2cw1_A 6 DLKKFVEDK--NQEYAARALGLSQKLIEE 32 (65)
T ss_dssp CHHHHHTTS--CHHHHHHHSSSCHHHHHH
T ss_pred HHHHHHHHc--CHHHHHHHhCCCHHHHHH
Confidence 378888886 999999999999766543
No 344
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.50 E-value=44 Score=28.66 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=24.2
Q ss_pred HHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 223 ~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
-||.-+ -+| .+.++||.++|||..++...+.
T Consensus 28 ~vl~l~-~~g-~s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 28 DILKLI-AQG-LPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp HHHHHH-TTT-CCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHH
Confidence 344443 466 6999999999999999988774
No 345
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.43 E-value=42 Score=31.77 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=6.3
Q ss_pred ccccccchhhhccCh
Q 002305 233 KVNVKDIASDIGISP 247 (939)
Q Consensus 233 kv~~~d~~~~~gis~ 247 (939)
+++|.|||.+.|||.
T Consensus 36 ~~t~~~Ia~~agvs~ 50 (211)
T 3him_A 36 ATTTREIAASLDMSP 50 (211)
T ss_dssp TCCHHHHHHHTTCCT
T ss_pred cCCHHHHHHHhCCCc
Confidence 344444444444443
No 346
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=20.42 E-value=46 Score=31.78 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHHHhhC--ccccccchhhhccChhhhhhhc
Q 002305 226 KKLIDRG--KVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 226 ~kli~~g--kv~~~d~~~~~gis~~~l~~~~ 254 (939)
+-+.++| ++++.|||.+.|||.-+|---.
T Consensus 24 ~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F 54 (217)
T 3nrg_A 24 DEFAQNDYDSVSINRITERAGIAKGSFYQYF 54 (217)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCTTGGGGTC
T ss_pred HHHHhcCcccCCHHHHHHHhCCcHHHHHHHc
Confidence 3445667 7888888888888887765433
No 347
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.35 E-value=67 Score=26.77 Aligned_cols=42 Identities=17% Similarity=-0.039 Sum_probs=31.3
Q ss_pred CCCcchhhHHHHHHHHHhhhhhhhhhhhHHHHHH--HHHHHHHHHHhhh
Q 002305 541 SPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCK--AVKTLNQEIDVAR 587 (939)
Q Consensus 541 ~p~de~e~E~~~~q~~ll~~~~~~~~~~~~lv~~--v~k~~~~e~~~~~ 587 (939)
.-..|+++|...|+..|...+-.-.. |.+ |-.+...++.+|+
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~-----I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFR-----IRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHH-----HHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHH-----HHHHHcCCCcHHHHHHHH
Confidence 34689999999999999988774322 332 4567778888888
No 348
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=20.31 E-value=42 Score=30.80 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 221 ~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
=..||.-|-+.|.++++|||..+||++-++...|
T Consensus 33 q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 66 (145)
T 3g3z_A 33 LFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVC 66 (145)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3678888889999999999999999998887665
No 349
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=20.30 E-value=39 Score=30.98 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-+.|.++++|||..+||++-++...|
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l 72 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWTKKDTPTVNRIV 72 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHH
Confidence 567888888899999999999999998887655
No 350
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=20.27 E-value=47 Score=31.96 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=8.8
Q ss_pred ccccccchhhhccChhhh
Q 002305 233 KVNVKDIASDIGISPDLL 250 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l 250 (939)
.+++.|||.+.|||.-+|
T Consensus 43 ~~t~~~IA~~agvs~~t~ 60 (214)
T 2zb9_A 43 QLTFERVARVSGVSKTTL 60 (214)
T ss_dssp GCCHHHHHHHHCCCHHHH
T ss_pred cCCHHHHHHHHCCCHHHH
Confidence 345555555555554443
No 351
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=20.27 E-value=39 Score=30.84 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=27.0
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|- .|.+++.|||..+|||+-++...|
T Consensus 40 ~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l 71 (146)
T 2gxg_A 40 FLVLRATS-DGPKTMAYLANRYFVTQSAITASV 71 (146)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHH
Confidence 55777777 899999999999999998876655
No 352
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=20.26 E-value=48 Score=30.84 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=9.1
Q ss_pred ccccccchhhhccChhhh
Q 002305 233 KVNVKDIASDIGISPDLL 250 (939)
Q Consensus 233 kv~~~d~~~~~gis~~~l 250 (939)
++++.|||.+.|||.-+|
T Consensus 28 ~~ti~~Ia~~agvs~~t~ 45 (194)
T 2g7s_A 28 SFSYADISQVVGIRNASI 45 (194)
T ss_dssp GCCHHHHHHHHCCCHHHH
T ss_pred cCCHHHHHHHhCCCchHH
Confidence 455555555555554444
No 353
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=20.18 E-value=46 Score=31.41 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCccccccchhhhccChhhhhhhc
Q 002305 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (939)
Q Consensus 222 ~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~ 254 (939)
..||.-|-..|.++++|||..+||++-++...|
T Consensus 49 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 81 (162)
T 3k0l_A 49 FTALSVLAAKPNLSNAKLAERSFIKPQSANKIL 81 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 578888888999999999999999999887665
No 354
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=20.15 E-value=54 Score=30.17 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhCccccccchhhhccChhhhhhhcc
Q 002305 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (939)
Q Consensus 220 ~~~~~l~kli~~gkv~~~d~~~~~gis~~~l~~~~~ 255 (939)
.|...||++-.+=..+..+||..+|||+.+|.+-=.
T Consensus 7 ~lG~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 7 ELGETFRKKREERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 478889999999999999999999999998876543
No 355
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.09 E-value=56 Score=26.94 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=29.2
Q ss_pred CCCcCcccCCCCCCCCCEEEecccCcccccccccCccCCCCceeccccccc
Q 002305 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (939)
Q Consensus 704 ~~~~CsVC~~~E~~~N~iV~Cd~C~vaVHq~CYGi~~ip~~~WlCd~C~~~ 754 (939)
.+..|.||++.-.....+... .|+-.||..|...-.. ....|..|+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~--~~~~CP~Cr~~ 61 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLE--VRKVCPLCNMP 61 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHH--HCSBCTTTCCB
T ss_pred CCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHH--cCCcCCCcCcc
Confidence 457899999853323344433 5998999999632110 11268888765
Done!