Your job contains 1 sequence.
>002306
MDDEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYH
TTTALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPG
NLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTN
VESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLV
RGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRA
LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDD
TALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSS
LIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESL
ERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRK
DGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL
SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI
ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM
QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE
LTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFAN
FPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEF
SDMPLETMDLKEALERVKRMKDDLEKDAGDCCWLQQFF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002306
(938 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2095097 - symbol:MSH2 "AT3G18524" species:3702... 3875 0. 1
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 1870 5.1e-193 1
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 1861 4.6e-192 1
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 1854 2.5e-191 1
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 1853 3.2e-191 1
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 1842 4.7e-190 1
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 1840 7.7e-190 1
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 1801 1.0e-185 1
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 1796 3.5e-185 1
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 1787 3.2e-184 1
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 1755 7.8e-181 1
UNIPROTKB|Q5B374 - symbol:AN5006.2 "Putative uncharacteri... 1749 3.4e-180 1
ASPGD|ASPL0000073909 - symbol:AN10621 species:162425 "Eme... 1742 1.9e-179 1
DICTYBASE|DDB_G0275809 - symbol:msh2 "mutS homolog" speci... 1396 4.8e-156 3
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 679 3.2e-148 3
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 1426 5.7e-146 1
UNIPROTKB|F1SQH6 - symbol:LOC100739713 "Uncharacterized p... 1265 6.6e-129 1
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 1142 3.4e-126 2
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 1165 2.6e-118 1
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 1164 3.3e-118 1
UNIPROTKB|F1SQH4 - symbol:LOC100739713 "Uncharacterized p... 1008 1.1e-101 1
WB|WBGene00003418 - symbol:msh-2 species:6239 "Caenorhabd... 974 4.5e-98 1
UNIPROTKB|Q9TXR4 - symbol:msh-2 "Protein MSH-2" species:6... 974 4.5e-98 1
UNIPROTKB|B1N4L6 - symbol:EHI_123830 "DNA mismatch repair... 956 3.7e-96 1
UNIPROTKB|Q7RQK0 - symbol:PY01096 "MutS homolog 2-related... 709 1.5e-89 2
UNIPROTKB|Q7R8N0 - symbol:PY07191 "DNA mismatch repair pr... 816 2.5e-81 1
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 771 1.5e-76 1
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 692 2.7e-76 3
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 583 6.1e-72 2
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 583 6.1e-72 2
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 718 5.1e-70 1
UNIPROTKB|Q89VX1 - symbol:mutS "DNA mismatch repair prote... 686 1.5e-67 1
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 659 1.9e-66 2
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 670 7.4e-66 1
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 673 9.3e-64 1
UNIPROTKB|F1P6X2 - symbol:MSH4 "Uncharacterized protein" ... 617 2.1e-61 2
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 647 1.1e-60 1
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 647 1.1e-60 1
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 492 1.4e-60 2
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 455 1.5e-59 2
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 633 3.6e-59 1
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 633 3.6e-59 1
UNIPROTKB|F1P4E2 - symbol:MSH4 "Uncharacterized protein" ... 615 5.0e-59 2
MGI|MGI:1860077 - symbol:Msh4 "mutS homolog 4 (E. coli)" ... 627 7.6e-59 1
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 627 2.2e-58 1
RGD|1309190 - symbol:Msh4 "mutS homolog 4 (E. coli)" spec... 622 2.9e-58 1
UNIPROTKB|E1BK76 - symbol:MSH4 "Uncharacterized protein" ... 613 3.4e-58 2
UNIPROTKB|E2RJA9 - symbol:MSH4 "Uncharacterized protein" ... 620 7.0e-58 2
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 601 9.7e-58 2
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 611 1.3e-57 1
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 616 3.4e-57 1
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 611 1.2e-56 1
UNIPROTKB|O15457 - symbol:MSH4 "MutS protein homolog 4" s... 606 3.8e-56 2
UNIPROTKB|I3L5Z8 - symbol:MSH4 "Uncharacterized protein" ... 467 9.8e-56 2
UNIPROTKB|F1S9R2 - symbol:MSH4 "Uncharacterized protein" ... 467 1.2e-55 2
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 577 2.5e-55 1
SGD|S000001162 - symbol:MSH1 "DNA-binding protein involve... 466 2.6e-55 3
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 598 3.0e-55 1
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 598 3.9e-55 1
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 491 4.5e-55 2
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 506 9.3e-55 2
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 589 2.3e-54 1
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 577 9.1e-54 1
UNIPROTKB|Q75D87 - symbol:AGOS_ABR137W "ABR137Wp" species... 477 9.3e-54 2
TAIR|locus:1005716529 - symbol:MSH7 "AT3G24495" species:3... 446 1.1e-52 2
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 571 1.8e-52 2
SGD|S000002504 - symbol:MSH6 "Protein required for mismat... 573 3.2e-52 1
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 577 7.0e-52 2
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 509 2.7e-51 3
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 500 7.4e-51 2
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 477 9.5e-51 3
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 557 1.0e-50 1
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 477 1.0e-50 3
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 492 1.7e-50 4
UNIPROTKB|A4R0R0 - symbol:MSH3 "DNA mismatch repair prote... 556 2.0e-50 1
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 500 3.1e-50 3
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 496 3.7e-50 3
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 497 3.7e-50 3
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 546 6.8e-50 1
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 488 7.2e-50 3
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 496 1.1e-49 3
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 548 1.7e-49 1
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 496 2.0e-49 3
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 542 2.6e-49 1
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 538 5.9e-49 1
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 526 9.4e-49 2
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 545 1.2e-48 2
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 535 1.3e-48 1
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 536 2.2e-48 2
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 544 9.6e-48 2
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 498 1.5e-47 3
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 421 1.5e-47 5
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 488 1.6e-47 3
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 527 2.3e-47 1
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 528 3.4e-47 2
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 522 3.6e-47 1
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 528 5.6e-47 2
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 525 3.1e-46 2
UNIPROTKB|F1RF09 - symbol:MSH3 "Uncharacterized protein" ... 513 1.0e-45 1
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 515 1.0e-45 3
WARNING: Descriptions of 85 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 3875 (1369.1 bits), Expect = 0., P = 0.
Identities = 730/936 (77%), Positives = 847/936 (90%)
Query: 3 DEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTT 62
+EQNKLPELKLDAKQA+GFLSFYKTLPNDTRAVRFFDR+DYYTAHGEN+ FIAKTYYHTT
Sbjct: 6 EEQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTT 65
Query: 63 TALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 122
TALRQLG+GS+ALSSVS+S+NMFETIARDLLLER DHT+ELYEGSGSNWRLVK+G+PGN+
Sbjct: 66 TALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGSPGNI 125
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
GS+EDVLFANNEMQDTPV+V++FP+F + C IG+ YVDLT+RVLGLAEFLDDS FTN+E
Sbjct: 126 GSFEDVLFANNEMQDTPVVVSIFPSFHDGRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLE 185
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRG 242
S+L+ALG KEC+ P E+ KS+ECK+L D+L RC VM+TERKK EFK RDL DL RLV+G
Sbjct: 186 SSLIALGAKECIFPAESGKSNECKSLYDSLERCAVMITERKKHEFKGRDLDSDLKRLVKG 245
Query: 243 SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
++EPVRDLVSGF++A ALGALLS++ELLS+E NYGN+ IR+Y + +MRLDSAAMRALN
Sbjct: 246 NIEPVRDLVSGFDLATPALGALLSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALN 305
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
V+ESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL+D+NEI RLDIVQ FV++
Sbjct: 306 VMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAG 365
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
LRQDLRQHLKRISD+ERL+ +LE+RR GLQ I+KLYQS+IRLP+I++A+QQY G+F+SLI
Sbjct: 366 LRQDLRQHLKRISDVERLLRSLERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEFASLI 425
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
ERYL LE+L+D DHL KFI LVE SVDLDQLENGEYMISSSYDT L++LK+++E LE+
Sbjct: 426 SERYLKKLEALSDQDHLGKFIDLVECSVDLDQLENGEYMISSSYDTKLASLKDQKELLEQ 485
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
QIH LHK+TA +LDL VDKALKLDK QFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG
Sbjct: 486 QIHELHKKTAIELDLQVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 545
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
VKFTNTKLKKLGDQYQ V+++Y++CQKELV+RV++T +FSE+F+ LA +LSE+DVLLSF
Sbjct: 546 VKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSF 605
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIIT 662
ADLA+SCPTPY RP+I D GDI+LEGSRHPCVEAQDWVNFIPNDC+L+RGKSWFQI+T
Sbjct: 606 ADLAASCPTPYCRPEITSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWFQIVT 665
Query: 663 GPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722
GPNMGGKSTFIRQVGV +LMAQVGSFVPCD+ASIS+RDCIFARVGAGDCQLRGVSTFMQE
Sbjct: 666 GPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQE 725
Query: 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782
MLETASILKGA+D+SLIIIDELGRGTSTYDGFGLAWAICEHLV+ RAPTLFATHFHELT
Sbjct: 726 MLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELT 785
Query: 783 ALAHENAN-EFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
ALA N+ NT VGVAN+HVSAHID+ SRKLTMLYKVEPGACDQSFGIHVAEFANF
Sbjct: 786 ALAQANSEVSGNT---VGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANF 842
Query: 842 PESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEFS 901
PESVV LAREKAAELEDF+PS++I ++ E G ++ R DP+++SRGA RAH+FLKEF+
Sbjct: 843 PESVVALAREKAAELEDFSPSSMIINNE--ESGKRKSREDDPDEVSRGAERAHKFLKEFA 900
Query: 902 DMPLETMDLKEALERVKRMKDDLEKDAGDCCWLQQF 937
+PL+ M+LK++L+RV+ MKD+LEKDA DC WL+QF
Sbjct: 901 AIPLDKMELKDSLQRVREMKDELEKDAADCHWLRQF 936
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 1870 (663.3 bits), Expect = 5.1e-193, P = 5.1e-193
Identities = 400/929 (43%), Positives = 580/929 (62%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+LD+ GF+ F++ +P T VR FDR D+YTAH E+A A+ + T ++ +G
Sbjct: 9 LQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKTLESVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAFKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD T+R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASIGVVGVKMSTVDGQRQVGVGYVDSTQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC++P K LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVMPGGETAGDMGK-LRQVIQRGGILITERKRADFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E V V ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQVNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTSGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D LRQ+L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++YE
Sbjct: 366 FVEDAELRQNLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKYE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ +L ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GKHQALFLAVFVTPLIDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A DL L K +KLD TQFG+ FR+T KEE +R F
Sbjct: 484 IMDDLEKKMQSTLVSAARDLGLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++
Sbjct: 542 VDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA ++ + P PY RP I G I L+ SRH CVE QD V FIPND + K
Sbjct: 602 LDAVVSFAHVSDAAPVPYVRPVILEKGRGRITLKASRHACVEVQDEVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQ 895
AE ANFP V+ A++KA ELE+F + ++E +KR + + +G +
Sbjct: 831 AELANFPRHVIECAKQKALELEEFQNIGKPQECDEMEPAAKRCYL----EREQGEKIIQE 886
Query: 896 FLKEFSDMPLETMDLKEALERVKRMKDDL 924
FL + +P M + ++K++K ++
Sbjct: 887 FLSKVKQVPFTEMSEESITRKLKQLKAEV 915
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 1861 (660.2 bits), Expect = 4.6e-192, P = 4.6e-192
Identities = 402/929 (43%), Positives = 578/929 (62%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L++ GF+ F++ +P T VR FDR D+YTAH E+A A+ + T ++ LG
Sbjct: 9 LQLESAAEVGFVRFFQAMPEKPTTTVRLFDRGDFYTAHHEDALLAAREVFKTQGVIKYLG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEG-SGS------NWRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ +GS +W L +PGN
Sbjct: 69 PAGTKTLESVVLSKMNFESFVKDLLLIR-QYRVEVYKNRAGSKASKENDWYLAFKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD +R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSTSIGVVGVKMSTVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPGGETAGDMGK-LRQVIQRGGILITERKRADFFTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E V V ++A AL A++ + ELLSD+SN+G Y + + YM+LD AA
Sbjct: 247 GKKGEQVNSAVLPEMENQVAASALSAVIKFLELLSDDSNFGQYELTTFDFSQYMKLDIAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++YE
Sbjct: 366 FVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIRALEKYE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GKHQGLLLAVFVTPLIDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A DL L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 IMDDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++
Sbjct: 542 VDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA +++ P PY RP I G I L+ SRH CVE QD V FIPND + K
Sbjct: 602 LDAVVSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEVQDEVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQ 895
AE ANFP V+ A++KA ELE+F ++E +KR + + +G +
Sbjct: 831 AELANFPRHVIECAKQKALELEEFQNIGGSQGYDEMEPAAKRCYL----EREQGEKIIQE 886
Query: 896 FLKEFSDMPLETMDLKEALERVKRMKDDL 924
FL + +P M + ++K++K ++
Sbjct: 887 FLSKVKQVPFTEMSEENITMKLKQLKAEV 915
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 1854 (657.7 bits), Expect = 2.5e-191, P = 2.5e-191
Identities = 398/929 (42%), Positives = 576/929 (62%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L++ GF+ F++ +P T VR FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD +R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERKK +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPGGETAGDMGK-LRQIIQRGGILITERKKADFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E + V ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL+++E
Sbjct: 366 FVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GKHQKLLLAVFVTPLTDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
LE+++ S A DL L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 IMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++
Sbjct: 542 VDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA +++ P PY RP I G IIL+ SRH CVE QD + FIPND + K
Sbjct: 602 LDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQ 895
AE ANFP+ V+ A++KA ELE+F +E +K+ + + +G +
Sbjct: 831 AELANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYL----EREQGEKIIQE 886
Query: 896 FLKEFSDMPLETMDLKEALERVKRMKDDL 924
FL + MP M + ++K++K ++
Sbjct: 887 FLSKVKQMPFTEMSEENITIKLKQLKAEV 915
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 1853 (657.3 bits), Expect = 3.2e-191, P = 3.2e-191
Identities = 394/929 (42%), Positives = 576/929 (62%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L+ GF+ F++ +P + VR FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
GS L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGSKTLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNKAGNKASKENEWYLAFKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + ++ + + +G+GYVD T+R LGL EF ++ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASVGVMGIKMAVVDGQRHVGVGYVDSTQRKLGLCEFPENDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPGGETTGDMGK-LRQVIQRGGILITERKRADFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E + ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQINSAALPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELATFDFSQYMKLDMAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAALLNK-CKTAQGQRLVNQWIKQPLMDRNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D+ LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++YE
Sbjct: 366 FVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPSVIQALEKYE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ +L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GRHQALLLAVFVTPLIDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A L L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 VMDGLEKKMQSTLINAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN++L L ++Y K EY+ Q +V ++ + + E ++L +L+
Sbjct: 542 VDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAH 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA ++++ P PY RP I G IIL+ SRH CVE QD V FIPND + K
Sbjct: 602 LDAIVSFAHVSNAAPVPYVRPVILEKGKGRIILKASRHACVEVQDEVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI +++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQ 895
AE ANFP V+ A++KA ELE+F + E +KR+ + + +G +
Sbjct: 831 AELANFPRHVIACAKQKALELEEFQNIGTSLGCDEAEPAAKRRCL----EREQGEKIILE 886
Query: 896 FLKEFSDMPLETMDLKEALERVKRMKDDL 924
FL + +P M + ++K++K ++
Sbjct: 887 FLSKVKQVPFTAMSEESISAKLKQLKAEV 915
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 1842 (653.5 bits), Expect = 4.7e-190, P = 4.7e-190
Identities = 387/885 (43%), Positives = 571/885 (64%)
Query: 11 LKLDAKQARGFLSFYKTLPN--DTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQL 68
L +D+ GFL+FY ++ + DT VR FDR DYYT HG++A F AK + T ++ L
Sbjct: 9 LSMDSASEHGFLNFYFSMSDKPDT-TVRVFDRNDYYTVHGKDAIFAAKEVFKTNGVIKNL 67
Query: 69 GTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-----WRLVKSGTPGNLG 123
G+G+ L SV +SK FE+ RDLLL R + +E+Y+ + + W++ +PGNL
Sbjct: 68 GSGNRRLESVVLSKMNFESFVRDLLLVR-QYRVEVYKNASKSSKEHDWQIAFKASPGNLT 126
Query: 124 SYEDVLFANN--EMQDTPVIVALFPNFRENGC-TIGLGYVDLTKRVLGLAEFLDDSHFTN 180
+E++LF + + +V + +G +G+GYVD T R LG+ EF D+ F+N
Sbjct: 127 QFEEILFGSGGGPAEGAVGVVGVRLGTGTDGQRVVGVGYVDSTLRKLGVCEFPDNDQFSN 186
Query: 181 VESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLV 240
+E+ LV +G KEC+LP + L+ + R G++LT+RKK+EF T+D+VQDL+RL+
Sbjct: 187 LEALLVQIGPKECVLPA-GDSGGDLGKLKQVVQRGGILLTDRKKSEFTTKDIVQDLNRLL 245
Query: 241 RGSV-EPVRDL-VSGFE--IAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSA 296
+ E V + E IA L A++ Y ELL+DE+N+G++ + + L+ YMRLD+A
Sbjct: 246 KARKGETVSSAALPEMEKKIAMSCLEAVIRYLELLADEANFGSFKMTTFDLNQYMRLDNA 305
Query: 297 AMRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQ 355
A++ALN+ + S DA SL GL+N+ C G+RL++ W+KQPL+D N+I RLD+V+
Sbjct: 306 AVQALNLFQGSCDDATGTHSLAGLLNK-CRTPQGQRLVNQWIKQPLIDKNKIEERLDLVE 364
Query: 356 AFVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQY 414
FV+D+ LR+ ++ L +R D+ R+ +++ + LQ ++YQS +LP + AL++Y
Sbjct: 365 TFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQSVGQLPNVVLALERY 424
Query: 415 EGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALK 474
G+ L+ ++ PL L D +KF ++ET++D++Q+E+ E+++ S+D LS L+
Sbjct: 425 SGKHQVLLHAAFISPLNDLISD--FSKFQEMIETTLDMNQVEHHEFLVKPSFDPTLSDLR 482
Query: 475 NEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFI 534
+ LE+ + + A L L K +KL+ Q G+ FR+T KEE +R +F
Sbjct: 483 ENMDRLEKAMQAALSSAARGLGLEATKTVKLESNAQIGYFFRVTCKEEKSLRNN--KKFT 540
Query: 535 VLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
L+ +K+GV+FTN+KL L ++Y K EEY+ Q +V +I A + + ++L +++
Sbjct: 541 TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA 600
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRG 654
+LD ++SFA ++ + P P+ RP I G ++L+ +RHPCVEAQD V FIPND I G
Sbjct: 601 QLDAVVSFAVVSHTAPVPFIRPKILEKGSGRLVLKAARHPCVEAQDEVAFIPNDVTFISG 660
Query: 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLR 714
+ F IITGPNMGGKST+IRQVGV +LMAQ+G FVPCD A +SV DC+ ARVGAGD Q++
Sbjct: 661 EKMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK 720
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774
GVSTFM EMLETA+IL+ A++ SLIIIDELGRGTSTYDGFGLAWAI E++ +++ LF
Sbjct: 721 GVSTFMAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF 780
Query: 775 ATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIH 834
ATHFHELTALA +Q+ V N HV+A +T LTMLYKV+ G CDQSFGIH
Sbjct: 781 ATHFHELTALA---------QQVPTVRNLHVTAL--TTDSTLTMLYKVKKGVCDQSFGIH 829
Query: 835 VAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKR 879
VAE A+FP+ V+ AREKA ELE+F + + ++A G K K+
Sbjct: 830 VAELASFPKHVIANAREKALELEEFQDISSVGEEA----GPKAKK 870
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 1840 (652.8 bits), Expect = 7.7e-190, P = 7.7e-190
Identities = 388/864 (44%), Positives = 551/864 (63%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L++ GF+ F++ +P T VR FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + +V + + + +G+GYVD +R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERKK +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECVLPGGETAGDMGK-LRQIIQRGGILITERKKADFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E + V ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL L+N+ C G+RL++ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D LRQ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL+++E
Sbjct: 366 FVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHE 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ L+ ++ PL L D +KF ++ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GKHQKLLLAVFVTPLTDLRSD--FSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
LE+++ S A DL L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 IMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++
Sbjct: 542 VDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA +++ P PY RP I G IIL+ SRH CVE QD + FIPND + K
Sbjct: 602 LDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDF 859
AE ANFP+ V+ A++KA ELE+F
Sbjct: 831 AELANFPKHVIECAKQKALELEEF 854
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 1801 (639.0 bits), Expect = 1.0e-185, P = 1.0e-185
Identities = 385/929 (41%), Positives = 570/929 (61%)
Query: 11 LKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
L+L+ GF+ F++ +P + V FDR D+YTAHGE+A A+ + T ++ +G
Sbjct: 9 LQLEGAAEVGFVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68
Query: 70 -TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGN 121
G+ L +V +SK FE+ +DLLL R + +E+Y+ N W L +PGN
Sbjct: 69 PAGAKTLQTVVLSKMNFESFVKDLLLVR-HYRVEVYKNKAGNKASKENDWYLAYKASPGN 127
Query: 122 LGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNV 181
L +ED+LF NN+M + I+ + + + +G+G VD T+R LGL EF D+ F+N+
Sbjct: 128 LSQFEDILFGNNDMATSIGIMGIKLSTVDGQRQVGVGDVDSTQRKLGLCEFPDNDQFSNL 187
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
E+ L+ +G KEC+LP K LR + R G+++TERK+ +F T+D+ QDL+RL++
Sbjct: 188 EALLIQIGPKECILPGGETAGDMGK-LRQVIQRGGILITERKRIDFSTKDIYQDLNRLLK 246
Query: 242 GSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAA 297
G E + V ++A +L A++ + ELLSD+SN+G + + + YM+LD AA
Sbjct: 247 GRKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELATFDFSQYMKLDMAA 306
Query: 298 MRALNVLE-SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
+RALN+ + S D + SL +N+ C G+RL+ W+KQPL+D N I RL++V+A
Sbjct: 307 VRALNLFQGSVEDTTGSQSLAAFLNK-CKTAQGQRLVSQWIKQPLMDKNRIEERLNLVEA 365
Query: 357 FVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV+D+ LR+ L++ L +R D+ RL +++ A LQ +LYQ +LP + AL++Y+
Sbjct: 366 FVEDSELRRALQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGVKQLPNVIQALEKYQ 425
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
G+ +L+ ++ PL L D +KF +ET++D+DQ+EN E+++ S+D LS L+
Sbjct: 426 GRHQALLLAVFVTPLTDLRSD--FSKFQEKIETTLDMDQVENHEFLVKPSFDPNLSELRE 483
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LE+++ S A L L K +KLD QFG+ FR+T KEE +R F
Sbjct: 484 VMDGLEKKMQSTLISAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFST 541
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ +K+GVKFTN++L L ++Y K EY+ Q +V ++ + + E +++ +L+
Sbjct: 542 VDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTVNDVLAH 601
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
LD ++SFA ++++ P PY RP I G II++ SRH CVE Q V FIPND + K
Sbjct: 602 LDAVVSFAHVSNAAPVPYVRPVILEKGKGRIIVKASRHACVEVQHDVAFIPNDVHFEKDK 661
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+G
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ I A +FA
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATNIGAFCMFA 781
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THFHELTALA Q+ V N HV+A +T LTMLY+V+ G CDQSFGIHV
Sbjct: 782 THFHELTALA---------SQIPTVNNLHVTAL--TTEETLTMLYQVKTGVCDQSFGIHV 830
Query: 836 AEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQ 895
AE ANFP V+ A++KA ELE+F + + +KR+ + + +G +
Sbjct: 831 AELANFPRHVIECAKQKALELEEFQSIGTSQGHDETQPAAKRRCL----EREQGEKIILE 886
Query: 896 FLKEFSDMPLETMDLKEALERVKRMKDDL 924
FL + +P + + ++K++K ++
Sbjct: 887 FLSKVKQVPFTDLSEESVSVKLKQLKAEV 915
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 1796 (637.3 bits), Expect = 3.5e-185, P = 3.5e-185
Identities = 386/876 (44%), Positives = 559/876 (63%)
Query: 68 LGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYE---GSGS----NWRLVKSGTPG 120
L G+ L SV +SK FE+ RDLLL R + +E+Y+ GS S +W L G+PG
Sbjct: 1 LAPGNQKLESVVLSKMNFESFVRDLLLVR-HYRVEVYKNKAGSKSVKENDWYLAYKGSPG 59
Query: 121 NLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTN 180
NL +E+VLFANN+M +V + + + IG+GYVD T R L + EF D+ F+N
Sbjct: 60 NLAQFEEVLFANNDMSMAIGVVGVKLSSADGQRVIGVGYVDTTLRKLSVCEFPDNDQFSN 119
Query: 181 VESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLV 240
+E+ LV LG KEC+LP + E LR + R G+++T+RKK +F T+D+VQDL+RL+
Sbjct: 120 LEALLVQLGPKECVLPGGDT-AGEMGKLRQVVQRGGILITDRKKADFTTKDIVQDLNRLL 178
Query: 241 RGSV-EPVRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSA 296
+ E + ++A +L A++ + ELLSD+SN+G Y + + L YM LD+A
Sbjct: 179 KSRKGEQMNSAALPEMEKQVAVSSLSAVIKFLELLSDDSNFGQYELTTFDLSQYMVLDNA 238
Query: 297 AMRALNVLESKTD-ANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQ 355
A++ALN+ +S + AN SL GL+N+ C G+RL++ W+KQPL+D N I RL++V+
Sbjct: 239 AVQALNLFQSSVENANNTQSLAGLLNK-CRTPQGQRLVNQWIKQPLMDKNRIEERLNLVE 297
Query: 356 AFVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQY 414
AFV DT LRQ L++ L +R D+ RL +++ A LQ ++YQ+ +LP + AL+++
Sbjct: 298 AFVVDTELRQGLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNVVQALEKH 357
Query: 415 EGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALK 474
EG L+ ++ PL + D +KF+ ++ET++D+D++EN E+++ +S+D L+ L+
Sbjct: 358 EGAHQMLLLAVFITPLNDIHSD--FSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELR 415
Query: 475 NEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFI 534
+ LE + +L K A +L L K++KL+ +QFGH FRIT KEE +R + ++
Sbjct: 416 EKMNELEESMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNNM--KYK 473
Query: 535 VLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
+ +T+K+GVKFTN+KL + ++Y K EEY+ Q +V +I A ++E +++ +++
Sbjct: 474 ITDTQKNGVKFTNSKLSAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIA 533
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRG 654
+LD ++SFA +++ P PY RP I G I+L+G+RHPC+E QD V FIPND +G
Sbjct: 534 QLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKG 593
Query: 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLR 714
K F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A I++ DCI ARVGAGD QL+
Sbjct: 594 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLK 653
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774
GVSTFM EMLETASIL+ A++ SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +F
Sbjct: 654 GVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMF 713
Query: 775 ATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIH 834
ATHFHELTALA Q+ V N HV+A + LTMLY+V+ G CDQSFGIH
Sbjct: 714 ATHFHELTALAD---------QVPTVNNLHVTALTSDDT--LTMLYRVKAGVCDQSFGIH 762
Query: 835 VAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAH 894
VAE A FP+ V+ AREKA ELE+F I + E KR + G
Sbjct: 763 VAELAAFPKHVIESAREKALELEEFQD---IGRPKESEGEPAAKRCY--REREEGEKIIQ 817
Query: 895 QFLKEFSDMPLETMDLKEALERVKRMKDD-LEKDAG 929
FL + +PL M ++ ++K+++ D L K+ G
Sbjct: 818 DFLSQVKALPLTDMSEEDIKTKLKQLRADVLAKNNG 853
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 1787 (634.1 bits), Expect = 3.2e-184, P = 3.2e-184
Identities = 384/869 (44%), Positives = 556/869 (63%)
Query: 75 LSSVSVSKNMFETIARDLLLERTDHTLELYE---GSGS----NWRLVKSGTPGNLGSYED 127
L SV +SK FE+ RDLLL R + +E+Y+ GS S +W L G+PGNL +E+
Sbjct: 3 LESVVLSKMNFESFVRDLLLVR-HYRVEVYKNKAGSKSVKENDWYLAYKGSPGNLAQFEE 61
Query: 128 VLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
VLFANN+M +V + + + IG+GYVD T R L + EF D+ F+N+E+ LV
Sbjct: 62 VLFANNDMSMAIGVVGVKLSSADGQRVIGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQ 121
Query: 188 LGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSV-EP 246
LG KEC+LP + E LR + R G+++T+RKK +F T+D+VQDL+RL++ E
Sbjct: 122 LGPKECVLPGGDT-AGEMGKLRQVVQRGGILITDRKKADFTTKDIVQDLNRLLKSRKGEQ 180
Query: 247 VRDLV---SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNV 303
+ ++A +L A++ + ELLSD+SN+G Y + + L YM LD+AA++ALN+
Sbjct: 181 MNSAALPEMEKQVAVSSLSAVIKFLELLSDDSNFGQYELTTFDLSQYMVLDNAAVQALNL 240
Query: 304 LESKTD-ANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
+S + AN SL GL+N+ C G+RL++ W+KQPL+D N I RL++V+AFV DT
Sbjct: 241 FQSSVENANNTQSLAGLLNK-CRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDTE 299
Query: 363 LRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSL 421
LRQ L++ L +R D+ RL +++ A LQ ++YQ+ +LP + AL+++EG L
Sbjct: 300 LRQGLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNVVQALEKHEGAHQML 359
Query: 422 IKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLE 481
+ ++ PL + D +KF+ ++ET++D+D++EN E+++ +S+D L+ L+ + LE
Sbjct: 360 LLAVFITPLNDIHSD--FSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELE 417
Query: 482 RQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKD 541
+ +L K A +L L K++KL+ +QFGH FRIT KEE +R + ++ + +T+K+
Sbjct: 418 ESMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNNM--KYKITDTQKN 475
Query: 542 GVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLS 601
GVKFTN+KL + ++Y K EEY+ Q +V +I A ++E +++ ++++LD ++S
Sbjct: 476 GVKFTNSKLSAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVS 535
Query: 602 FADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQII 661
FA +++ P PY RP I G I+L+G+RHPC+E QD V FIPND +GK F II
Sbjct: 536 FAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHII 595
Query: 662 TGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQ 721
TGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A I++ DCI ARVGAGD QL+GVSTFM
Sbjct: 596 TGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMA 655
Query: 722 EMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781
EMLETASIL+ A++ SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FATHFHEL
Sbjct: 656 EMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHEL 715
Query: 782 TALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
TALA Q+ V N HV+A + LTMLY+V+ G CDQSFGIHVAE A F
Sbjct: 716 TALAD---------QVPTVNNLHVTALTSDDT--LTMLYRVKAGVCDQSFGIHVAELAAF 764
Query: 842 PESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEFS 901
P+ V+ AREKA ELE+F I + E KR + G FL +
Sbjct: 765 PKHVIESAREKALELEEFQD---IGRPKESEGEPAAKRCY--REREEGEKIIQDFLSQVK 819
Query: 902 DMPLETMDLKEALERVKRMKDD-LEKDAG 929
+PL M ++ ++K+++ D L K+ G
Sbjct: 820 ALPLTDMSEEDIKTKLKQLRADVLAKNNG 848
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 1755 (622.8 bits), Expect = 7.8e-181, P = 7.8e-181
Identities = 396/940 (42%), Positives = 563/940 (59%)
Query: 9 PELKLDAKQARGFLSFYKTLPN-DTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQ 67
PELK+D + GF+ FYK+LP A+R FDR D+YTAHG++ATFIA+T Y TT+ +RQ
Sbjct: 5 PELKVDDEH--GFIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQ 62
Query: 68 LGTGSDA-LSSVSVSKNMFETIARDLLLERTDHTLELYEG-SGS-NWRLVKSGTPGNLGS 124
LG L SV+++ +F R+ L + +E++ SG NW++VK +PGNL
Sbjct: 63 LGRSDHTGLPSVTMTVTVFRQFLREALF-KLGKRIEIWASPSGRMNWKVVKQASPGNLQD 121
Query: 125 YEDVLFANNEMQDTPVIVALFPNFRENGC-TIGLGYVDLTKRVLGLAEFLDDSHFTNVES 183
ED L + + PVI+A+ + + + T+G+ + D + R LG++EFLD+ ++N E+
Sbjct: 122 VEDEL--GGQFEGAPVILAVKISAKASEARTVGVCFADASVRELGVSEFLDNDLYSNFEA 179
Query: 184 ALVALGCKECLLPT---EAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLV 240
L+ LG KEC++ E K E LR + CGV + ER EF T+D+ QDL RL+
Sbjct: 180 LLIQLGVKECIVTQDKGEKEKDPELAKLRQIIDNCGVAIAERSAGEFGTKDIEQDLSRLL 239
Query: 241 R----GSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSA 296
+ S+ P DL ++A G+ AL+ Y +L D SN+G Y + ++ L +M+LD+A
Sbjct: 240 KDERAASLLPQTDL----KLAMGSASALIKYLGILHDPSNFGQYQLYQHDLAQFMKLDAA 295
Query: 297 AMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
A++ALN++ D KN SL+GL+N C +G RLL WLKQPL++ EI R +V+A
Sbjct: 296 ALKALNLMPGARDGAKNMSLYGLLNH-CKTPVGSRLLSQWLKQPLMNAEEIEKRQQLVEA 354
Query: 357 FVDDTALRQDLRQ-HLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
F +DT LRQ +++ HL+ I D+ RL ++ +A L+ +V+ YQ IRLP L+
Sbjct: 355 FANDTELRQSMQEEHLRSIPDLYRLSKRFQRGKATLEDVVRAYQVVIRLPGFIGTLEGVM 414
Query: 416 GQ-FSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALK 474
+ + + E Y + L L+D L K +VET+VDLD L+N E++I +D L ++
Sbjct: 415 DEAYRDPLDEVYTNKLRELSDS--LVKLQEMVETTVDLDALDNHEFIIKPEFDDSLRIIR 472
Query: 475 NEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFI 534
+ + L + + + A DL +K + L+ G R+T+ E IR ++++
Sbjct: 473 KKLDRLRTDMDNEFAEAAEDLGQEREKKIFLENHKVHGWCMRLTRTEAGCIRNN--SRYL 530
Query: 535 VLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
T+K+GV FT L+ L ++ ++ + Y Q LVN V+ A ++ + + LA +L+
Sbjct: 531 ECSTQKNGVYFTTKTLQALRREFDQLSQNYNRTQSSLVNEVVGVAASYCPVLERLAAVLA 590
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRG 654
LDV++SFA + P Y RP I+P G +L +RHPC+E QD V FI ND L R
Sbjct: 591 HLDVIVSFAHCSVHAPISYVRPKIHPRGTGRTVLTEARHPCMEVQDDVTFITNDVTLTRE 650
Query: 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLR 714
S F IITGPNMGGKST+IRQ+GV LMAQ+G FVPC A +++ D I ARVGA D QL+
Sbjct: 651 DSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSSAELTIFDSILARVGASDSQLK 710
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774
GVSTFM EMLETA+ILK AT SLIIIDELGRGTSTYDGFGLAWAI EH+V+EI LF
Sbjct: 711 GVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFALF 770
Query: 775 ATHFHELTALAHENANEFN---TKQMVGV-ANYHVSAHIDSTSRK---LTMLYKVEPGAC 827
ATHFHELTALA + N N T + G + V D ++K +T+LYKVEPG C
Sbjct: 771 ATHFHELTALADQYPNVKNLHVTAHISGTDTDTDVITDEDEKAKKKREVTLLYKVEPGIC 830
Query: 828 DQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMS 887
DQSFGIHVAE FP+ VV +A+ KA ELEDFT + + V ++ D+
Sbjct: 831 DQSFGIHVAELVRFPDKVVRMAKRKADELEDFTSKHEEENGGGLGVQYSKQ------DVE 884
Query: 888 RGAARAHQFLKEFSDMPLETMDLKEALERVKRMKDDLEKD 927
G+A L ++ D KE E V R+K+ ++KD
Sbjct: 885 EGSALLKDVLVKWKDEVKSGRMSKE--EMVARLKELVQKD 922
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 1749 (620.7 bits), Expect = 3.4e-180, P = 3.4e-180
Identities = 387/942 (41%), Positives = 570/942 (60%)
Query: 9 PELKLDAKQARGFLSFYKTLPND----TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTA 64
P+L++D + GF+ FY++L +D +R FDR D+Y+AHG+ A FIA+T Y TT+
Sbjct: 5 PDLRVDDEV--GFIRFYRSLASDDSHNNETIRIFDRGDWYSAHGKEAEFIARTVYKTTSV 62
Query: 65 LRQLGTG-SDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGS---NWRLVKSGTPG 120
LR LG + L SV++S +F R+ L R + +E++ +G+ +W+ VK +PG
Sbjct: 63 LRNLGRSETGGLPSVTMSITVFRNFLREALF-RLNKRIEIWGSAGTGKGHWKKVKQASPG 121
Query: 121 NLGSYEDVLFANNE--MQDTPVIVALFPNFRENGC-TIGLGYVDLTKRVLGLAEFLDDSH 177
NL E+ L A P+I+A+ + + +G+ + D + R LG++EFLD+
Sbjct: 122 NLQDVEEELGAMGMEGSNGAPIIMAVKLSAKAGEARNVGVCFADASVRELGVSEFLDNDV 181
Query: 178 FTNVESALVALGCKECLLPTEAV-KSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDL 236
++N E+ ++ LG KECL+ + K E +R CG+ ++ER ++F +D+ QDL
Sbjct: 182 YSNFEALVIQLGVKECLVVQDVNRKDVEVAKIRAICDNCGIAISERPASDFGVKDIEQDL 241
Query: 237 DRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSA 296
RL+R + ++A G AL+ Y ++SD +N+G Y + ++ L YM+LD+A
Sbjct: 242 TRLLRDERSAGTLPETELKLAMGGAAALIRYLGVMSDATNFGQYQLYQHDLAQYMKLDAA 301
Query: 297 AMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQA 356
A+RALN++ D +K+ SLFGL+N C +G RLL WLKQPL+D+ EI R +V+A
Sbjct: 302 ALRALNLMPGPRDGSKSMSLFGLLNH-CKTPVGSRLLAQWLKQPLMDLAEIEKRQRLVEA 360
Query: 357 FVDDTALRQDLRQ-HLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLP-YIRSALQQY 414
FV T LRQ +++ HL+ I D+ RL ++++A L+ +V++YQ +IRLP ++ S
Sbjct: 361 FVVSTELRQMMQEEHLRSIPDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVNSLENVM 420
Query: 415 EGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALK 474
+ ++ + ++ Y L + + L K +VET+VDLD LEN E++I +D L ++
Sbjct: 421 DEEYQTPLETEYTAKLRNHSAS--LAKLEEMVETTVDLDALENHEFIIKPEFDDSLRIIR 478
Query: 475 NEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFI 534
+ + L ++ HK A DLD +DK L L+ +G FR+T+ E IR K Q
Sbjct: 479 KKLDQLRHDMYLEHKAVARDLDQEMDKKLFLENHRVYGWCFRLTRNEAGCIRNKKAYQ-- 536
Query: 535 VLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
T+K+GV FT + ++ L ++ ++ Y Q LV+ V+ A ++ + + LA +L+
Sbjct: 537 ECSTQKNGVYFTTSTMQSLRREHDQLSSNYNRTQTGLVSEVVNVAASYCPVLEQLAGVLA 596
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRG 654
LDV++SFA + PT YT+P I+P G+ +L+ +RHPC+E QD ++FI ND LIR
Sbjct: 597 HLDVIVSFAHASVHAPTAYTKPKIHPRGTGNTVLKEARHPCMEMQDDISFITNDVSLIRD 656
Query: 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLR 714
+S F IITGPNMGGKST+IR +GV LMAQ+G FVPC A +++ DCI ARVGA D QL+
Sbjct: 657 ESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLK 716
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774
GVSTFM EMLET++ILK AT SLIIIDELGRGTSTYDGFGLAWAI EH+V EIR LF
Sbjct: 717 GVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLF 776
Query: 775 ATHFHELTALAH---ENANEFNTKQMVG---VANYHVSAHIDSTSRKLTMLYKVEPGACD 828
ATHFHELT LA ++ + +G AN T +K+T+LY+VEPG CD
Sbjct: 777 ATHFHELTTLADRYPKSVKNLHVVAFIGDGTTANEEDEKEKRKTRQKVTLLYRVEPGICD 836
Query: 829 QSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSR 888
QSFGIHVAE FPE VV +AR+KA ELEDFT SA D A + + S ++
Sbjct: 837 QSFGIHVAELVRFPEKVVNMARQKAEELEDFT-SA---DSAGNAASATIDKYSQ-EEVEE 891
Query: 889 GAARAHQFLKEFSDMPLETMDLKEALERVKRMKDDLEKDAGD 930
G+A L ++ +E + LE +++ DL K GD
Sbjct: 892 GSALLKALLVKWKSA-IEEPGRELTLEEKRQVMRDLVK--GD 930
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 1742 (618.3 bits), Expect = 1.9e-179, P = 1.9e-179
Identities = 385/937 (41%), Positives = 564/937 (60%)
Query: 14 DAKQARGFLSFYKTLPND----TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
D GF+ FY++L +D +R FDR D+Y+AHG+ A FIA+T Y TT+ LR LG
Sbjct: 8 DVDDEVGFIRFYRSLASDDSHNNETIRIFDRGDWYSAHGKEAEFIARTVYKTTSVLRNLG 67
Query: 70 TG-SDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGS---NWRLVKSGTPGNLGSY 125
+ L SV++S +F R+ L R + +E++ +G+ +W+ VK +PGNL
Sbjct: 68 RSETGGLPSVTMSITVFRNFLREALF-RLNKRIEIWGSAGTGKGHWKKVKQASPGNLQDV 126
Query: 126 EDVLFANNE--MQDTPVIVALFPNFRENGC-TIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
E+ L A P+I+A+ + + +G+ + D + R LG++EFLD+ ++N E
Sbjct: 127 EEELGAMGMEGSNGAPIIMAVKLSAKAGEARNVGVCFADASVRELGVSEFLDNDVYSNFE 186
Query: 183 SALVALGCKECLLPTEAV-KSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR 241
+ ++ LG KECL+ + K E +R CG+ ++ER ++F +D+ QDL RL+R
Sbjct: 187 ALVIQLGVKECLVVQDVNRKDVEVAKIRAICDNCGIAISERPASDFGVKDIEQDLTRLLR 246
Query: 242 GSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRAL 301
+ ++A G AL+ Y ++SD +N+G Y + ++ L YM+LD+AA+RAL
Sbjct: 247 DERSAGTLPETELKLAMGGAAALIRYLGVMSDATNFGQYQLYQHDLAQYMKLDAAALRAL 306
Query: 302 NVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDT 361
N++ D +K+ SLFGL+N C +G RLL WLKQPL+D+ EI R +V+AFV T
Sbjct: 307 NLMPGPRDGSKSMSLFGLLNH-CKTPVGSRLLAQWLKQPLMDLAEIEKRQRLVEAFVVST 365
Query: 362 ALRQDLRQ-HLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLP-YIRSALQQYEGQFS 419
LRQ +++ HL+ I D+ RL ++++A L+ +V++YQ +IRLP ++ S + ++
Sbjct: 366 ELRQMMQEEHLRSIPDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVNSLENVMDEEYQ 425
Query: 420 SLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQES 479
+ ++ Y L + + L K +VET+VDLD LEN E++I +D L ++ + +
Sbjct: 426 TPLETEYTAKLRNHSAS--LAKLEEMVETTVDLDALENHEFIIKPEFDDSLRIIRKKLDQ 483
Query: 480 LERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETR 539
L ++ HK A DLD +DK L L+ +G FR+T+ E IR K Q T+
Sbjct: 484 LRHDMYLEHKAVARDLDQEMDKKLFLENHRVYGWCFRLTRNEAGCIRNKKAYQ--ECSTQ 541
Query: 540 KDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVL 599
K+GV FT + ++ L ++ ++ Y Q LV+ V+ A ++ + + LA +L+ LDV+
Sbjct: 542 KNGVYFTTSTMQSLRREHDQLSSNYNRTQTGLVSEVVNVAASYCPVLEQLAGVLAHLDVI 601
Query: 600 LSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQ 659
+SFA + PT YT+P I+P G+ +L+ +RHPC+E QD ++FI ND LIR +S F
Sbjct: 602 VSFAHASVHAPTAYTKPKIHPRGTGNTVLKEARHPCMEMQDDISFITNDVSLIRDESSFL 661
Query: 660 IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTF 719
IITGPNMGGKST+IR +GV LMAQ+G FVPC A +++ DCI ARVGA D QL+GVSTF
Sbjct: 662 IITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTF 721
Query: 720 MQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779
M EMLET++ILK AT SLIIIDELGRGTSTYDGFGLAWAI EH+V EIR LFATHFH
Sbjct: 722 MAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHFH 781
Query: 780 ELTALAH---ENANEFNTKQMVG---VANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGI 833
ELT LA ++ + +G AN T +K+T+LY+VEPG CDQSFGI
Sbjct: 782 ELTTLADRYPKSVKNLHVVAFIGDGTTANEEDEKEKRKTRQKVTLLYRVEPGICDQSFGI 841
Query: 834 HVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARA 893
HVAE FPE VV +AR+KA ELEDFT SA D A + + S ++ G+A
Sbjct: 842 HVAELVRFPEKVVNMARQKAEELEDFT-SA---DSAGNAASATIDKYSQ-EEVEEGSALL 896
Query: 894 HQFLKEFSDMPLETMDLKEALERVKRMKDDLEKDAGD 930
L ++ +E + LE +++ DL K GD
Sbjct: 897 KALLVKWKSA-IEEPGRELTLEEKRQVMRDLVK--GD 930
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 1396 (496.5 bits), Expect = 4.8e-156, Sum P(3) = 4.8e-156
Identities = 341/843 (40%), Positives = 494/843 (58%)
Query: 85 FETIARDLLLERTDHTL-ELYEGSGSNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVA 143
FE I ++LL E+ + + S W L+K G+PGN +EDVL N + V++A
Sbjct: 116 FENIVKELLDEKKKIEIWSMKPNSKQQWELIKKGSPGNTQMFEDVLLNGN--CEGSVMMA 173
Query: 144 LFPNFRENGCTI-GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKS 202
L RE G + G+ + D T + +G+++F+D+ + +N+ S ++ + KECLL + K+
Sbjct: 174 LKVT-REKGSIVFGISFGDATFKTIGVSQFMDNDNLSNLSSFIMQMSVKECLLCCDQ-KN 231
Query: 203 SECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEP-VRDLVSGFEIAPGAL 261
+ + +++ L+ G+ TE K++F +++ QDL RL+ GSV+ + D+ I +
Sbjct: 232 YDYQKVKEKLSDAGIPFTELPKSDFSSKNAEQDLTRLL-GSVKNNLPDIEQEHAIQSASC 290
Query: 262 GA----LLSYAELLSDESNYGNYYIRKY-SLDS--YMRL------DSAAMRALN---VLE 305
LLS + Y + +Y LDS + L DS+ A
Sbjct: 291 LIKHLDLLSNPNYFG-KFKLEKYDLDRYMKLDSSSFKGLHIIDLKDSSVSAAAGGGGAGG 349
Query: 306 SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQ 365
+ + +NK+ SL+ L+N+ C MG RLL W+KQPLL+ EI ARL+ V+AF +D LRQ
Sbjct: 350 ASSSSNKDQSLYNLLNQ-CNTPMGSRLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQ 408
Query: 366 DLRQH-LKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKE 424
LR + LK+I D++RL L ++A L+ V LY RLP + +L + LIK
Sbjct: 409 SLRSNDLKKIGDLDRLSKKLHGQKATLEDCVNLYGIVTRLPVVLQSLNNHSSIHQELIKV 468
Query: 425 RYLDPLESLTDDDHLNKFIALVETSVDLDQL-ENGEYMISSSYDTGLSALKNEQESLERQ 483
+++ LES+ D KF A+VE ++DLD + EY+I SS+D L ++ +++ + +
Sbjct: 469 NFIESLESIISD--FAKFCAMVEKTIDLDLANDKHEYVIRSSFDETLRGIQLKKDQISNK 526
Query: 484 IHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGV 543
I A DL+L K +KL + + RI++K+E IR K ++IV T KDGV
Sbjct: 527 IERFRVDIADDLNLDEAK-VKLHYSEKDMFLLRISRKDEVAIRDK--KKYIVHATAKDGV 583
Query: 544 KFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFA 603
+F ++ L + Y+K EY + Q L R +Q A +F + + L+++++ LDV ++ +
Sbjct: 584 RFATREIDTLNEAYKKWSAEYLDKQDGLAKRTLQIAASFVPLIEDLSSLIATLDVFVTLS 643
Query: 604 DLASSCPTPYTRPDINP--PD---VGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWF 658
++S P P+ RP+I P D G +I+ G RHPCVE QD VNFI ND L RG+S F
Sbjct: 644 HVSSIAPIPFIRPEIIPLGSDENGAGTVII-GGRHPCVEIQDNVNFIANDIDLTRGQSQF 702
Query: 659 QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVST 718
QIITGPNMGGKSTFIRQVG+ +LMAQ+G FVP +A+I+V DCI +RVGAGD QLRGVST
Sbjct: 703 QIITGPNMGGKSTFIRQVGLIVLMAQIGCFVPAQKATIAVVDCILSRVGAGDSQLRGVST 762
Query: 719 FMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778
FM EMLET+ ILK AT SLIIIDELGRGTSTYDGFGLAW I E++ +I LFATHF
Sbjct: 763 FMAEMLETSYILKVATKNSLIIIDELGRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHF 822
Query: 779 HELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEF 838
HELT L+ + MV N HVSA + + T+LYKVE G CDQSFGIHVA
Sbjct: 823 HELTILS-------DLLPMV--KNLHVSASTQNNT--FTLLYKVEQGPCDQSFGIHVAIL 871
Query: 839 ANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFLK 898
ANFP V+ A++KA ELE F + + + K K + ND+ + + + L
Sbjct: 872 ANFPSQVIENAKQKAKELESFESNTLKQNHNKFLEEFKEINFNS-NDVEKSLSLVNSLLN 930
Query: 899 EFS 901
++S
Sbjct: 931 KYS 933
Score = 117 (46.2 bits), Expect = 4.8e-156, Sum P(3) = 4.8e-156
Identities = 23/68 (33%), Positives = 45/68 (66%)
Query: 2 DDEQNKLPELKLDAKQARGFLSFYKTLPN---DTRAVRFFDRRDYYTAHGENATFIAKTY 58
D+EQ + ++ L K+ + F++F+++L + DT +R FDR+ YY+ HGE+A F+A +
Sbjct: 3 DNEQEESSQVVL--KEDKTFVTFFQSLVSSNEDTDTIRLFDRKGYYSIHGEDAVFVAMMH 60
Query: 59 YHTTTALR 66
+ + +L+
Sbjct: 61 FKSKKSLK 68
Score = 45 (20.9 bits), Expect = 4.8e-156, Sum P(3) = 4.8e-156
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 854 AELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEFSDMPLETMDLKEA 913
A L +F PS VI ++AK + +K + N + + ++FL+EF ++ + D++++
Sbjct: 869 AILANF-PSQVI-ENAKQK--AKELESFESNTLKQNH---NKFLEEFKEINFNSNDVEKS 921
Query: 914 LERVKRM 920
L V +
Sbjct: 922 LSLVNSL 928
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 679 (244.1 bits), Expect = 3.2e-148, Sum P(3) = 3.2e-148
Identities = 146/264 (55%), Positives = 184/264 (69%)
Query: 626 IILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV 685
+ L+ +RHPC+EAQD V FIPND L G S IITGPNMGGKST+IRQVGV +MAQ+
Sbjct: 684 LYLKQARHPCLEAQDDVKFIPNDVNLEHGSSELLIITGPNMGGKSTYIRQVGVITVMAQI 743
Query: 686 GSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELG 745
G VPC+ A + + D I ARVGA D QL+G+STFM EMLETA+IL+ AT RSLIIIDELG
Sbjct: 744 GCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLIIIDELG 803
Query: 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805
RGTST DGFGLAWAI EH+V +I LFATH+HE+T L+ E + V N HV
Sbjct: 804 RGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEMTKLSEE---------ITTVKNLHV 854
Query: 806 SAHI-DSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAV 864
+A++ DS S+ + +LY V GA D+SFGIHVA+ A+FP ++ +A KAAELE A
Sbjct: 855 TAYVGDSESKDVALLYNVCEGASDRSFGIHVAKLAHFPPKIIEMASNKAAELEAEDSGA- 913
Query: 865 ISDDAKIEVGSKRKRISDPNDMSR 888
D + EV SK++ ++ D+ R
Sbjct: 914 -QGDTQ-EVKSKKEGMAIVRDIMR 935
Score = 576 (207.8 bits), Expect = 3.2e-148, Sum P(3) = 3.2e-148
Identities = 141/432 (32%), Positives = 231/432 (53%)
Query: 199 AVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAP 258
++ ++E LR+ + CG ++T + +EF RD+ +L +++ V G ++A
Sbjct: 214 SINTAEINRLRNIIEGCGALVTTIRSSEFSARDVELELSKVLDSPVTHALVPELGLQLAM 273
Query: 259 GALGALLSYA--ELLS-----DESNYGN-YYIRKYSLDSYMRLDSAAMRALNVLESKT-D 309
+ ALL Y LL+ D N ++ ++L+ YMRLD AA+R+LN+L +
Sbjct: 274 ASCNALLRYLGPALLNPDMEDDRENTSRKLHLYHHNLEQYMRLDIAAVRSLNLLPPPNGN 333
Query: 310 ANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQ 369
A+K SL+GL+N C MG R L W+ QPLLD I R D+V A V+D RQ L
Sbjct: 334 AHKTMSLYGLLNH-CRTAMGARNLRRWIVQPLLDAKSIERRHDLVSALVEDAEARQLLLD 392
Query: 370 --HLKR-ISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERY 426
HL R I DI +L L + A L+ +V++YQ + LP I + L + L+ + Y
Sbjct: 393 DDHLLRSIPDIPKLCRRLTRGSASLEDVVRIYQMAKALPKIVTVLDSLTSEHKDLVDKVY 452
Query: 427 LDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHS 486
+ L + + L K I LVET++DL+ L++ +Y+I + +D L L+ + L+ I
Sbjct: 453 TNVLNNHCKN--LEKLIELVETTIDLEALDSHQYIIRAEFDEELLDLRQRLDELQHSIFE 510
Query: 487 LHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFT 546
HK+ SDL +K L L++ +G R+T+ E +R + ++ + L T+K+GV FT
Sbjct: 511 EHKRVGSDLHQDTEKKLHLEQHHLYGWCLRLTRTEAGCLRGR-SSHYTELSTQKNGVYFT 569
Query: 547 NTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
+L L + Y + Y+ Q L VI+ A T+ +++ +++ LDV+LSFA +
Sbjct: 570 TKRLHSLNNSYMDHQKSYRYHQNGLAREVIKIAATYGPPLEAIGQVIAHLDVILSFAHAS 629
Query: 607 SSCPTPYTRPDI 618
+ PY RP+I
Sbjct: 630 TVAVIPYVRPNI 641
Score = 271 (100.5 bits), Expect = 3.2e-148, Sum P(3) = 3.2e-148
Identities = 61/197 (30%), Positives = 112/197 (56%)
Query: 17 QARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALS 76
+AR F +FY+ +P DT VR FDR ++Y A GE+A+F+A+ YHTT+ L+ + +
Sbjct: 15 EARMF-NFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKHHNVSNTSYC 73
Query: 77 SVSVSKNMFETIARDLLLERTDHTLELYEGSGSN--WRLVKSGTPGNLGSYEDVLFANNE 134
++S S +F A D+L +E++ + + + L+K +PGN+ ED+L + N
Sbjct: 74 NLSPS--LFIKFAEDVLSNLAKR-VEIWGANSAKTGFELLKQASPGNMQMLEDLLVSENY 130
Query: 135 MQDTP--------VIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALV 186
+ T V++A+ +++ IG+ ++D + LG++EF+D +TN E+ +V
Sbjct: 131 QESTAISDSSVSSVLLAVTTRVKQDQRIIGVAFIDPILKKLGVSEFVDSDAYTNFEALIV 190
Query: 187 ALGCKECLLPTEAVKSS 203
+G KEC++ +S+
Sbjct: 191 QVGAKECIISQSGHEST 207
Score = 56 (24.8 bits), Expect = 8.0e-68, Sum P(2) = 8.0e-68
Identities = 71/296 (23%), Positives = 117/296 (39%)
Query: 124 SYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLA----EFLDDSHFT 179
S DV +++ D+PV AL P E G + + + R LG A + DD T
Sbjct: 243 SARDVELELSKVLDSPVTHALVP---ELGLQLAMASCNALLRYLGPALLNPDMEDDRENT 299
Query: 180 ---------NVESAL---VALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEF 227
N+E + +A LLP + + +L L C + R +
Sbjct: 300 SRKLHLYHHNLEQYMRLDIAAVRSLNLLPPPNGNAHKTMSLYGLLNHCRTAMGARNLRRW 359
Query: 228 KTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIR---- 283
+VQ L L S+E DLVS A LL LL + R
Sbjct: 360 ----IVQPL--LDAKSIERRHDLVSALVEDAEARQLLLDDDHLLRSIPDIPKLCRRLTRG 413
Query: 284 KYSLDSYMRLDSAAM---RALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMW---- 336
SL+ +R+ A + + VL+S T +K+ L+++ T + ++
Sbjct: 414 SASLEDVVRIYQMAKALPKIVTVLDSLTSEHKD-----LVDKVYTNVLNNHCKNLEKLIE 468
Query: 337 LKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNL--EKRRAG 390
L + +D+ +++ I++A D+ L DLRQ L + L H++ E +R G
Sbjct: 469 LVETTIDLEALDSHQYIIRAEFDEELL--DLRQRL------DELQHSIFEEHKRVG 516
Score = 37 (18.1 bits), Expect = 8.1e-66, Sum P(2) = 8.1e-66
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 529 LTTQFIVLETRKDGVKFTNTKLKKLG 554
+TT+ + + R GV F + LKKLG
Sbjct: 148 VTTR-VKQDQRIIGVAFIDPILKKLG 172
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 1426 (507.0 bits), Expect = 5.7e-146, P = 5.7e-146
Identities = 338/866 (39%), Positives = 492/866 (56%)
Query: 9 PELKLDAKQARGFLSFYKTL-PNDTRAVRFFDRRDYYTAHG-ENATFIAKTYYHTTTALR 66
P L +D R F+ F+ L VRFFD D YT HG ++ +AK Y +T +
Sbjct: 12 PTLNMDTNARRNFIKFHAKLGEKPATTVRFFDHTDRYTVHGSDDCELVAKIVYKSTAFIG 71
Query: 67 QL--GTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLGS 124
L + L VS+SK FE R+LLL R ++ +E+Y + S+W + G+PGNL
Sbjct: 72 ALLPDDKKETLQFVSMSKGNFELAVRELLLVR-NYRVEVYVKNSSDWEIEYRGSPGNLLQ 130
Query: 125 YEDVLFANNEMQDTPVIVALFPNFRENGCT-IGLGYVDLTKRVLGLAEFLDDSHFTNVES 183
+ED+LF+N E+ I++L G +G+ V+ L EFLDD FT +E+
Sbjct: 131 FEDILFSNKEVLVGNSIISLLVKLDGGGQRRVGVASVEQNDCKFQLLEFLDDDFFTELEA 190
Query: 184 ALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR-- 241
+V LG KECLLP+ + S KTL D R GVM+T KK+ DL+QDL+RL+R
Sbjct: 191 TVVLLGPKECLLPSIEGEYSAVKTLLD---RNGVMITMPKKSG--DNDLLQDLNRLLRFA 245
Query: 242 -GSVEPVRDLVS-GFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMR 299
G E L ++A AL + Y +L++D N G+Y I++ L+ ++ LDSAA+
Sbjct: 246 KGQQEDATGLKELQLQLASNALKTAIKYLDLVNDAGNLGHYEIKQLDLNRFVHLDSAAVA 305
Query: 300 ALNVLESKTDANKNF------SLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDI 353
ALN++ K + + S+ G+++ C G RL+ W+KQPL N +N R +I
Sbjct: 306 ALNIMP-KPGTHPSMPSYRWQSVLGVLDH-CRTPQGHRLMGQWVKQPLRSRNILNDRHNI 363
Query: 354 VQAFVDDTALRQDLR-QHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQ 412
VQ ++ + L +LKRI DI L L +R+A LQ + ++YQ +R P I L
Sbjct: 364 VQCLLESPDTMETLSLDYLKRIPDILMLTKKLMRRKANLQDLFRIYQVILRTPKILKVLH 423
Query: 413 QYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSA 472
+ + +S I+ P +S D L +VE VD + +E GEY++ +S+D+ L
Sbjct: 424 ELD---NSTIESVICAPFKSFLKD--LTGLKQMVEQVVDFEAIERGEYLVKASFDSRLME 478
Query: 473 LKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQ 532
L+ L ++ L + + +L+L +KL+ + GH FRIT K++ +RK
Sbjct: 479 LQQMMTELYSKMEELQFKCSQELNLDGKNQVKLESVAKLGHHFRITVKDDSVLRKN--KN 536
Query: 533 FIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATM 592
+ +++ K GV+FT+ KL+ D++ Y+ Q +V +I AV ++ L
Sbjct: 537 YRIVDVIKGGVRFTSDKLEGYADEFASCRTRYEEQQLSIVEEIIHVAVGYAAPLTLLNNE 596
Query: 593 LSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLI 652
L++LD L+SFA A S PTPY RP + +++LE RHPC+E Q+ VNFI N
Sbjct: 597 LAQLDCLVSFAIAARSAPTPYVRPKMLEEGARELVLEDVRHPCLELQEHVNFIANSVDFK 656
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712
+ + IITGPNMGGKST+IR VG +LMA +G+FVPC A+IS+ D I RVGA D
Sbjct: 657 KEECNMFIITGPNMGGKSTYIRSVGTAVLMAHIGAFVPCSLATISMVDSILGRVGASDNI 716
Query: 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPT 772
++G+STFM EM+ET+ I++ ATD+SL+IIDELGRGTSTY+G G+AW+I EHL +E + T
Sbjct: 717 IKGLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFT 776
Query: 773 LFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFG 832
LFATHFHE+T LA +T V N H++A D+ T+LY+V G ++SFG
Sbjct: 777 LFATHFHEITKLAET----LST-----VKNCHMAAVADADD--FTLLYQVRSGVMEKSFG 825
Query: 833 IHVAEFANFPESVVTLAREKAAELED 858
I VA ANFPE VV A+E E ED
Sbjct: 826 IQVARLANFPEHVVQNAQEVYNEFED 851
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
Identities = 266/584 (45%), Positives = 372/584 (63%)
Query: 342 LDVNEINARLDIVQAFVDDTALRQDLRQHL-KRISDIERLMHNLEKRRAGLQQIVKLYQS 400
+D N I RL++V+AFV+D LRQ L++ L +R D+ RL +++ A LQ +LYQ
Sbjct: 1 MDKNRIEERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQG 60
Query: 401 SIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEY 460
+LP + A+++YEGQ +L+ ++ PL L D +KF ++ET++D+DQ+EN E+
Sbjct: 61 INQLPNVIQAMEKYEGQHQALLLAVFVTPLIDLRSD--FSKFQEMIETTLDMDQVENHEF 118
Query: 461 MISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKK 520
++ S+D LS L+ + LE+++ S A DL L K +KLD QFG+ FR+T K
Sbjct: 119 LVKPSFDPNLSELREIMDDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCK 178
Query: 521 EEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAV 580
EE +R F ++ +K+GVKFTN+KL L ++Y K EY+ Q +V ++ +
Sbjct: 179 EEKVLRNN--KNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISS 236
Query: 581 TFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQD 640
+ E ++L +L++LD ++SFA +++ P PY RP I G I L+ SRH CVE QD
Sbjct: 237 GYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEVQD 296
Query: 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRD 700
V FIPND + K F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ D
Sbjct: 297 EVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVD 356
Query: 701 CIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAI 760
CI ARVGAGD QL+GVSTFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI
Sbjct: 357 CILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAI 416
Query: 761 CEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLY 820
E++ +I A +FATHFHELTALA N+ T V N HV+A +T LTMLY
Sbjct: 417 SEYIATKIGAFCMFATHFHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLY 465
Query: 821 KVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRI 880
+V+ G CDQSFGIHVAE ANFP V+ A++KA ELE+F + ++E +KR +
Sbjct: 466 QVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNIGAPQEHDEMEPAAKRCYL 525
Query: 881 SDPNDMSRGAARAHQFLKEFSDMPLETMDLKEALERVKRMKDDL 924
+ +G +F+ + +P M + ++K++K ++
Sbjct: 526 ----EREQGEKIIQEFVSKVKQVPFTEMSEENITMKLKQLKAEV 565
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 1142 (407.1 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 282/738 (38%), Positives = 424/738 (57%)
Query: 157 LGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCG 216
+G + ++ L+EF D+ ++N+ES L+ LG KE ++P + K L +
Sbjct: 145 VGVCVIADSIVHLSEFEDNELYSNLESLLIQLGVKEVVIPANV----DNKKFFQMLEKLN 200
Query: 217 VMLTERKKTEFKTRDLVQDLDRLV-RGSVE---PVRDLVS-GFEIAPGALGALLSYAELL 271
++ K+ F +D QD+ +L+ ++E + + S + +A GAL+ Y +LL
Sbjct: 201 DLVVSAAKS-FP-KDNEQDISKLLDTENLELSLAAKGINSLDYALALSCCGALIDYLDLL 258
Query: 272 SDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKR 331
+ + + I KY+L ++M+LDS+ M+ALN+L + T S+F L C G R
Sbjct: 259 NGDKTFE---INKYNLSTFMKLDSSTMKALNILPNGTQKAIT-SIFELFK--CKTLGGSR 312
Query: 332 LLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHN--LEKRRA 389
LL WLKQPL+D++ I R ++V+A +DDT+LR ++++ L ++ DI RL+ L +R+
Sbjct: 313 LLSQWLKQPLIDLSLIEERQELVKAMIDDTSLRVEIQEFLSKVPDINRLLKKIGLGVKRS 372
Query: 390 G-----LQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIA 444
G L ++V LYQ LP + L + Y PL+ D+ L+KF
Sbjct: 373 GAENKKLNEVVNLYQLVSLLPNLTEILTI----------DYYAKPLKK--DEQALSKFCE 420
Query: 445 LVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPV-DKAL 503
LVET++DLD + +Y I +D LS + N ES + I+ L+ + DL+L L
Sbjct: 421 LVETTIDLDTSFDKDYKIKPDFDPSLSEISNNMESAFKAINDLYLEAGDDLNLDTASNKL 480
Query: 504 KLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEE 563
KL++ G R+T+ + +R K +Q+ L+T K GV FT ++K+L +Y K +E
Sbjct: 481 KLEQHQTHGWCMRVTRNDSRVLRGK--SQYKELQTVKSGVFFTTIEMKRLSQEYTKAYDE 538
Query: 564 YKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDV 623
Y Q E++ ++ +T+ + +SL++ L+ LDV+ FA A YT+P + P +
Sbjct: 539 YNVKQSEVIKEILSLTLTYEPVLQSLSSTLAHLDVITCFATTAML--NSYTQPKLFPFES 596
Query: 624 G-DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM 682
I L SRHP +E QD +NFI ND K+ F IITGPNMGGKST+IRQ+G LM
Sbjct: 597 SRKINLIESRHPLLEVQDDINFISNDVKM--DDKHFAIITGPNMGGKSTYIRQIGTIALM 654
Query: 683 AQVGSFVPC-DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIII 741
AQVGSF+P D A + + D I +RVGAGD QL+G+STFM EMLET+SIL AT SLIII
Sbjct: 655 AQVGSFIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEMLETSSILATATANSLIII 714
Query: 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVA 801
DELGRGTSTYDGFGLAWAI E L++ + +FATHFHEL+ L+ + ++ GV
Sbjct: 715 DELGRGTSTYDGFGLAWAISEELIKR-KCFAVFATHFHELSQLSEK----YD-----GVE 764
Query: 802 NYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTP 861
N ++ A + T+ +T++YKV PG + SFGI VAE + PE +V +A+ K EL + P
Sbjct: 765 NLNLMA--EQTNEDITLIYKVGPGISNTSFGISVAEKLHMPEKIVNMAKRKVEELSEEPP 822
Query: 862 SAVISDDAKIEVGSKRKR 879
+ ++ G R R
Sbjct: 823 IKKQCSETEVREGMSRLR 840
Score = 187 (70.9 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 101/422 (23%), Positives = 191/422 (45%)
Query: 10 ELKL-DAKQARGFLSFYKTLP-NDTRAVRFFDRR--DYYTAHGENATFIAKTYYHTTTAL 65
+LK D R + Y LP ++ +RF D DY+TA G +A IA+ Y T + +
Sbjct: 7 DLKFSDLADERSYFKKYSQLPPKESTTIRFIDHNNHDYFTALGSDADLIAEKIYRTQSVI 66
Query: 66 RQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLGSY 125
+ + V++S F+ L + +E+Y ++L+ SGT GNL S
Sbjct: 67 KH----HNQTKYVTISPQNFKESLNYCL--QNHFKVEVYHSK--TFQLISSGTAGNLDSL 118
Query: 126 EDVLFANNEMQD--TPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVES 183
+ + + +D + I A+ + G +G+ + ++ L+EF D+ ++N+ES
Sbjct: 119 SEEFDIDFDFRDGSSSSIAAI-----KLGNKVGVCVI--ADSIVHLSEFEDNELYSNLES 171
Query: 184 ALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTER--KKTEFKTRDLVQDLDRLVR 241
L+ LG KE ++P V + + + + L V + K E L+ D + L
Sbjct: 172 LLIQLGVKEVVIPAN-VDNKKFFQMLEKLNDLVVSAAKSFPKDNEQDISKLL-DTENLEL 229
Query: 242 G-SVEPVRDLVSGFEIAPGALGALLSYAELLSDESNY--GNYYIRKY-SLDSY-MR-LDS 295
+ + + L + +A GAL+ Y +LL+ + + Y + + LDS M+ L+
Sbjct: 230 SLAAKGINSL--DYALALSCCGALIDYLDLLNGDKTFEINKYNLSTFMKLDSSTMKALNI 287
Query: 296 AAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWL---KQPLLD--VNEINAR 350
+ S + K +L G +R + + + L+ + L +Q L+ +++ + R
Sbjct: 288 LPNGTQKAITSIFELFKCKTLGG--SRLLSQWLKQPLIDLSLIEERQELVKAMIDDTSLR 345
Query: 351 LDIVQAFVDDTALRQDLRQHLKRIS-DIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRS 409
++I Q F+ D+ + LK+I ++R E ++ L ++V LYQ LP +
Sbjct: 346 VEI-QEFLSKVP---DINRLLKKIGLGVKR--SGAENKK--LNEVVNLYQLVSLLPNLTE 397
Query: 410 AL 411
L
Sbjct: 398 IL 399
Score = 118 (46.6 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 810 DSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDA 869
+ T+ +T++YKV PG + SFGI VAE + PE +V +A+ K EL + P
Sbjct: 771 EQTNEDITLIYKVGPGISNTSFGISVAEKLHMPEKIVNMAKRKVEELSEEPPI------- 823
Query: 870 KIEVGSKRKRISDPNDMSRGAARAHQFLKEFSDMP 904
+K+ S+ ++ G +R + LKE+ + P
Sbjct: 824 -------KKQCSE-TEVREGMSRLREILKEWRNNP 850
Score = 40 (19.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 895 QFLKEFSDMPLETMDLKEALERVKRMKDDLE 925
Q L +F ++ T+DL + ++ ++K D +
Sbjct: 413 QALSKFCELVETTIDLDTSFDKDYKIKPDFD 443
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
Identities = 270/617 (43%), Positives = 373/617 (60%)
Query: 300 ALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVD 359
A++ S ++ K SLF L+N C G RLL+ WLKQPL +++EIN R D+V +D
Sbjct: 322 AVSGFTSAGNSGKVTSLFQLLNH-CKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLID 380
Query: 360 DTALRQDLR-QHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQY-EGQ 417
LRQ L ++L I DI RL L KR L+ ++K+YQ S R+P I + E
Sbjct: 381 QIELRQMLTSEYLPMIPDIRRLTKKLNKR-GNLEDVLKIYQFSKRIPEIVQVFTSFLEDD 439
Query: 418 -----FSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLE-NGEYMISSSYDTGLS 471
+ L++ +L PL + L+KF +VET+VDLD E N E+MI ++ L
Sbjct: 440 SPTEPVNELVRSVWLAPLSHHVEP--LSKFEEMVETTVDLDAYEENNEFMIKVEFNEELG 497
Query: 472 ALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTT 531
++++ ++L +IHS+H +A DL DK LKL+ G R+T+ + ++RK
Sbjct: 498 KIRSKLDTLRDEIHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDAKELRKH--K 555
Query: 532 QFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLAT 591
++I L T K G+ F+ +LK + ++ + +EY Q LV +I +T++ +F+ L+
Sbjct: 556 KYIELSTVKAGIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEKLSL 615
Query: 592 MLSELDVLLSFADLASSCPTPYTRPDINPPDVGDII-LEGSRHPCVEAQDWVNFIPNDCK 650
+L+ LDV+ SFA +S P PY RP ++P D L SRHP +E QD ++FI ND
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLEMQDDISFISNDVT 675
Query: 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGD 710
L GK F IITGPNMGGKST+IRQVGV LMAQ+G FVPC+ A I++ D I RVGAGD
Sbjct: 676 LESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRVGAGD 735
Query: 711 CQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA 770
QL+GVSTFM E+LETASILK A+ SLII+DELGRGTSTYDGFGLAWAI EH+ +I
Sbjct: 736 SQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGC 795
Query: 771 PTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK-------LTMLYKVE 823
LFATHFHELT L+ + N V N HV AHI+ ++ +T+LYKVE
Sbjct: 796 FALFATHFHELTELSEKLPN---------VKNMHVVAHIEKNLKEQKHDDEDITLLYKVE 846
Query: 824 PGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDP 883
PG DQSFGIHVAE FPE +V +A+ KA EL+D + ++D K + ++S
Sbjct: 847 PGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTN---NEDLK------KAKLS-L 896
Query: 884 NDMSRGAARAHQFLKEF 900
+++ G R LKE+
Sbjct: 897 QEVNEGNIRLKALLKEW 913
Score = 410 (149.4 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 143/536 (26%), Positives = 254/536 (47%)
Query: 9 PELKL-DAKQARGFLSFYKTLPNDT-RAVRFFDRRDYYTAHGENATFIAKTYYHTTTALR 66
PELK D + R F Y LP + +R D+ DYYT G +A F+A + YHT + L+
Sbjct: 6 PELKFSDVSEERNFYKKYTGLPKKPLKTIRLVDKGDYYTVIGSDAIFVADSVYHTQSVLK 65
Query: 67 --QLG--TGS---DALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTP 119
QL T + V+VS + T+ + LL+ + +E+Y+ W+L+KS +P
Sbjct: 66 NCQLDPVTAKNFHEPTKYVTVSLQVLATLLKLCLLD-LGYKVEIYD---KGWKLIKSASP 121
Query: 120 GNLGSYEDVLFANNEMQDTPVIVALFP---NFRENGCTIGLGYVDLTKRVLGLAEFLDDS 176
GN+ +++ N D+ +I+A N ++ C IG+ ++D T +G+ + +D+
Sbjct: 122 GNIEQVNELMNMNI---DSSIIIASLKVQWNSQDGNCIIGVAFIDTTAYKVGMLDIVDNE 178
Query: 177 HFTNVESALVALGCKECL---LPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLV 233
++N+ES L+ LG KECL L + + ++E + + + + RCG ++T K +EF +D+
Sbjct: 179 VYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQKVINVIDRCGCVVTLLKNSEFSEKDVE 238
Query: 234 QDLDRLVRGSVEPVRDLVSGF-EIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMR 292
DL +L+ + L + +++ GA AL+ Y +LLS++ G Y + ++ L +M+
Sbjct: 239 LDLTKLLGDDL--ALSLPQKYSKLSMGACNALIGYLQLLSEQDQVGKYELVEHKLKEFMK 296
Query: 293 LDSAAMRALNVLESKTD---ANKNFSLFGLMNRTCTAGMGK-RLLHMWLKQPLLD--VNE 346
LD++A++ALN+ + N ++ G T GK L L + V
Sbjct: 297 LDASAIKALNLFPQGPQNPFGSNNLAVSGF---TSAGNSGKVTSLFQLLNHCKTNAGVRL 353
Query: 347 INARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPY 406
+N L +D+ R DL +L I IE + + I +L + +
Sbjct: 354 LNEWLKQPLTNIDEINKRHDLVDYL--IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGN 411
Query: 407 IRSALQQYEGQFSSLIKERYLDPLESLTDDDH----LNKFIA---LVETSVDLDQLENGE 459
+ L+ Y QFS I E + S +DD +N+ + L S ++ L E
Sbjct: 412 LEDVLKIY--QFSKRIPE-IVQVFTSFLEDDSPTEPVNELVRSVWLAPLSHHVEPLSKFE 468
Query: 460 YMISSSYDTGLSALKNEQESLER-QIHSLHKQTASDLDLPVDK--ALKLDKGTQFG 512
M+ ++ D L A + E + + + + + S LD D+ ++ LD G
Sbjct: 469 EMVETTVD--LDAYEENNEFMIKVEFNEELGKIRSKLDTLRDEIHSIHLDSAEDLG 522
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 291/733 (39%), Positives = 406/733 (55%)
Query: 202 SSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAP-GA 260
S+E K + + RCG ++T K +EF +D+ DL +L + S +A A
Sbjct: 207 SAELKKVTGVIERCGCVVTFVKNSEFNNKDVEADLAKLCGDELATSLPRFSKLALASCNA 266
Query: 261 LGALLSYAELLSDESNYG--NYYIRKY-SLD-SYMRLDSA-----AMRALNVLESKTDAN 311
L +E +Y Y + ++ LD S ++ S + ++ K N
Sbjct: 267 LIGYQQLLNNAGNEGSYQIVEYSLSEFMKLDASAVKALSIFPQGPSTQSGMATSGKFGGN 326
Query: 312 -KNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQ- 369
K SL L+N+ C G RLL+ WLKQPL D I R ++V VD LR LR
Sbjct: 327 GKITSLLQLLNK-CKTNAGVRLLNEWLKQPLSDKGSIEKRHNLVDYLVDQLELRSILRDD 385
Query: 370 HLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQY-----EGQF-SSLIK 423
+L + D+ RL L R L+ ++K+YQ + R+P I L++ EG L+
Sbjct: 386 YLPLVPDVRRLTKKLN-RNGSLEDVLKVYQFAQRIPEINGVLKENLDALSEGSHVKDLVL 444
Query: 424 ERYLDPLESLTDDDHLNKFIALVETSVDLDQLEN-GEYMISSSYDTGLSALKNEQESLER 482
E + +PL + L+KF +VET+VDL+ E E+MI ++ L+ ++ E L+
Sbjct: 445 ETWYNPLNEHVEP--LHKFQEMVETTVDLEAYEETNEFMIKVEFNDELARIRTELVDLKD 502
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
+I ++H T+ DL +K LKL+ G R+T+ + +R+ +++ L T K G
Sbjct: 503 KIRTIHLDTSDDLGFDPEKKLKLENHHVHGWCMRLTRNDAKALRQH--KKYLELSTVKAG 560
Query: 543 VKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSF 602
+ F+ +LK L D+ + ++Y Q LV ++ +++S + + L+ +L+ LDVL SF
Sbjct: 561 IYFSTKELKLLSDEIGTLQQDYDRKQSALVKEIVTITLSYSPVLEKLSLVLANLDVLCSF 620
Query: 603 ADLASSCPTPYTRPDINPPDVGDIILE--GSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI 660
A ++S P PY RP + G +E SRHP VEAQD V FI ND L S F I
Sbjct: 621 AHVSSYAPIPYVRPVMYDMHAGQRKMELLASRHPLVEAQDEVTFISNDVVLEADSSGFAI 680
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
ITGPNMGGKST+IRQVGV L+AQ+G FVPCD A I++ D I RVGAGD QL+GVSTFM
Sbjct: 681 ITGPNMGGKSTYIRQVGVICLLAQIGCFVPCDAAEITIVDAILCRVGAGDSQLKGVSTFM 740
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780
EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAW+I EH+ + I LFATHFHE
Sbjct: 741 AEMLETASILRNATKNSLIIIDELGRGTSTYDGFGLAWSISEHIAKNIGCFALFATHFHE 800
Query: 781 LTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK---LTMLYKVEPGACDQSFGIHVAE 837
LTALA + N V N HV AH++ S K +T+LYKVEPG DQSFGIHVAE
Sbjct: 801 LTALADDCPN---------VTNLHVVAHVEEKSHKSDDITLLYKVEPGISDQSFGIHVAE 851
Query: 838 FANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFL 897
FP +V +A+ KA EL DD K E +K P +++G+ L
Sbjct: 852 VVQFPSKIVKMAKRKATEL----------DDIKEETECLKKLKCSPEHIAKGSEVLKNLL 901
Query: 898 KEFSD-MPLETMD 909
+E++ + E +D
Sbjct: 902 QEWASILRAENLD 914
Score = 658 (236.7 bits), Expect = 1.2e-62, P = 1.2e-62
Identities = 190/644 (29%), Positives = 319/644 (49%)
Query: 9 PELKL-DAKQARGFLSFYKTLP-NDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALR 66
PELK DA + RGF + +LP ++ +R DR +YYT G++A F+A+ YHT L+
Sbjct: 6 PELKFSDASEERGFYRRFASLPPKPSQTIRIVDRGEYYTILGQDAIFVAENVYHTQAVLK 65
Query: 67 QLGTGS-------DALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTP 119
+ + V++S + ++ + LLE+ +E+Y+ S W+L+KS +P
Sbjct: 66 DFRVDAAVAKQLAEPTKYVTMSPQVIASLLKMALLEQ-GFKVEIYDRS---WKLLKSASP 121
Query: 120 GNLGSYEDVLFANNEMQDTPVIVALFP---NFRENGCTIGLGYVDLTKRVLGLAEFLDDS 176
GN+ +D++ N D+ V++A N + C +G+ YVD +G+ + +D+
Sbjct: 122 GNIDQVDDLM---NVSVDSSVVLASVKFQFNASDGFCVLGVSYVDSNSYKIGMLDIVDNE 178
Query: 177 HFTNVESALVALGCKECLLP---TEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLV 233
++N ES L+ LG KECLLP S+E K + + RCG ++T K +EF +D+
Sbjct: 179 VYSNFESFLIQLGVKECLLPDLRNNESFSAELKKVTGVIERCGCVVTFVKNSEFNNKDVE 238
Query: 234 QDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRL 293
DL +L G E L ++A + AL+ Y +LL++ N G+Y I +YSL +M+L
Sbjct: 239 ADLAKLC-GD-ELATSLPRFSKLALASCNALIGYQQLLNNAGNEGSYQIVEYSLSEFMKL 296
Query: 294 DSAAMRALNVL------------ESKTDAN-KNFSLFGLMNRTCTAGMGKRLLHMWLKQP 340
D++A++AL++ K N K SL L+N+ C G RLL+ WLKQP
Sbjct: 297 DASAVKALSIFPQGPSTQSGMATSGKFGGNGKITSLLQLLNK-CKTNAGVRLLNEWLKQP 355
Query: 341 LLDVNEINARLDIVQAFVDDTALRQDLRQ-HLKRISDIERLMHNLEKRRAGLQQIVKLYQ 399
L D I R ++V VD LR LR +L + D+ RL L R L+ ++K+YQ
Sbjct: 356 LSDKGSIEKRHNLVDYLVDQLELRSILRDDYLPLVPDVRRLTKKLN-RNGSLEDVLKVYQ 414
Query: 400 SSIRLPYIRSALQQYEGQFS--SLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLEN 457
+ R+P I L++ S S +K+ L+ + ++ H+ E LE
Sbjct: 415 FAQRIPEINGVLKENLDALSEGSHVKDLVLETWYNPLNE-HVEPLHKFQEMVETTVDLE- 472
Query: 458 GEYMISSSYDTGLSALKNEQESLERQIHSLHKQTAS---DL--DLPVDKALKLDKGTQFG 512
Y ++ + + +E + ++ L + + D DL D KL
Sbjct: 473 -AYEETNEFMIKVE-FNDELARIRTELVDLKDKIRTIHLDTSDDLGFDPEKKLKLENHHV 530
Query: 513 HVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELV 572
H + + + +++ L T K G+ F+ +LK L D+ + ++Y Q LV
Sbjct: 531 HGWCMRLTRNDAKALRQHKKYLELSTVKAGIYFSTKELKLLSDEIGTLQQDYDRKQSALV 590
Query: 573 NRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRP 616
++ +++S + + L+ +L+ LDVL SFA ++S P PY RP
Sbjct: 591 KEIVTITLSYSPVLEKLSLVLANLDVLCSFAHVSSYAPIPYVRP 634
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
Identities = 214/447 (47%), Positives = 286/447 (63%)
Query: 478 ESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE 537
+ LE+++ S A DL L K +KLD QFG+ FR+T KEE +R F ++
Sbjct: 2 DDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNN--KNFSTVD 59
Query: 538 TRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELD 597
+K+GVKFTN+KL L ++Y K EY+ Q +V ++ + + E ++L +L++LD
Sbjct: 60 IQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLD 119
Query: 598 VLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSW 657
++SFA +++ P PY RP I G I L+ SRH CVE QD V FIPND + K
Sbjct: 120 AVVSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQM 179
Query: 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVS 717
F IITGPNMGGKST+IRQ GV +LMAQ+G FVPC+ A +S+ DCI ARVGAGD QL+GVS
Sbjct: 180 FHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVS 239
Query: 718 TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777
TFM EMLETASIL+ AT SLIIIDELGRGTSTYDGFGLAWAI E++ +I A +FATH
Sbjct: 240 TFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATH 299
Query: 778 FHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAE 837
FHELTALA N+ T V N HV+A +T LTMLY+V+ G CDQSFGIHVAE
Sbjct: 300 FHELTALA----NQIPT-----VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHVAE 348
Query: 838 FANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFL 897
ANFP V+ A++KA ELE+F + ++E +KR + + +G +F+
Sbjct: 349 LANFPRHVIECAKQKALELEEFQNIGAPQEHDEMEPAAKRCYL----EREQGEKIIQEFV 404
Query: 898 KEFSDMPLETMDLKEALERVKRMKDDL 924
+ +P M + ++K++K ++
Sbjct: 405 SKVKQVPFTEMSEENITMKLKQLKAEV 431
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 266/876 (30%), Positives = 446/876 (50%)
Query: 14 DAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSD 73
D + L K+ +T A+ F R +Y++ +G++ATF+A + + ++ +D
Sbjct: 6 DEASDKALLKILKSKSPNTIAI--FSRGEYFSVYGDDATFVATNIFKSDVCVKTFTLSTD 63
Query: 74 ALSSVS-VSKNMFETIARDLLLERTDHTL----ELYEGSGSNWRLVKSGTPGNLGSYEDV 128
+ +S N + + ++ T L ELY W++ K G+PGN +E
Sbjct: 64 NSQQMKYISVNRGQY---EKVVRETIVLLRCSVELYSSEQGEWKMTKRGSPGNTVDFEQE 120
Query: 129 LFANNEMQDTPVI-VALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
+ +++ P++ + + P +N T+ + R++ ++E++D F+ E +
Sbjct: 121 IGVSDQ---APILAIYIHPGDDDNRVTL-CAWDAGNVRIV-ISEYIDTPSFSQTEQCIFG 175
Query: 188 LGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPV 247
L E +L E + + K + TR V ++ K + + D+++ + + E
Sbjct: 176 LCPTEYILVNEGSVAPKAKKIASMFTRMEVHNKQQLKPKSQWSDVIESVHLDYKDEAEKQ 235
Query: 248 RDLVSGFEIAPGALGALLSYAELLSDESNYGNYY-IRKYSLDSYMRLDSAAMRALNVLE- 305
+ + L L S A +DE + Y I Y M +DS A+ AL + +
Sbjct: 236 NENIKE------CLQILHSNA---ADEYSISEKYSIFNYGTHGNMLIDSCAVEALELFQL 286
Query: 306 --SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTAL 363
+ + + N +L+ ++N+ C G++LL WL +PL ++ IN RLDIV+A ++ +
Sbjct: 287 NYNYLEKSNNLTLYNVLNK-CKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFENQTI 345
Query: 364 RQDLRQH-LKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEG--QFSS 420
RQ LR L R+ D +L L R+ LQ + + YQ++ L + L Q QF+
Sbjct: 346 RQKLRDSILARMPDCSQLARRL-MRKCTLQDLNRFYQAATLLETVEMQLIQLSEAEQFAP 404
Query: 421 LIKERYLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQES 479
I + + + +F L + D D + EN E + + + + + E
Sbjct: 405 SINRLLKSEITEILKK--VERFQVLCDEFFDFDYEKENKEIRVRVDFVPEIQEISEKLEQ 462
Query: 480 LERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETR 539
+ER L K+ ++ + D LKLDK +Q+G FR+T KEE IRKK +LET
Sbjct: 463 MERVAEKLRKKYSAKFEC--DN-LKLDKNSQYGFYFRVTLKEEKSIRKK---DVHILETT 516
Query: 540 K-DGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDV 598
K GVKF+ +L + D++ + +Y ++E+++ + + A F + ++A +++ LDV
Sbjct: 517 KGSGVKFSVGELSDINDEFLEFHLKYTRAEEEVISMLCKKAEEFIPLIPAMAQLIATLDV 576
Query: 599 LLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWF 658
+S + A++ YTRP++ P + L+ RHP +E FIPND ++ K
Sbjct: 577 FVSLSTFAATSSGIYTRPNLLPLGSKRLELKQCRHPVIEGNSEKPFIPND--VVLDKCRL 634
Query: 659 QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVST 718
I+TG NMGGKST++R ++IL+AQ+GSFVPC A+ISV D IF RVGA D Q +G+ST
Sbjct: 635 IILTGANMGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGIST 694
Query: 719 FMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778
FM EML+ ++IL+ AT S ++IDELGRGTST+DGFG+A AI + ++ I+ ++FATHF
Sbjct: 695 FMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCLSIFATHF 754
Query: 779 HELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEF 838
HE+ LA + G + I++ ++ MLYKV G SFG+ VA+
Sbjct: 755 HEMGKLAEQP----------GAVALQMGVQIENN--EIHMLYKVFEGVAQCSFGLQVAKM 802
Query: 839 ANFPESVVTLAREKAAEL-EDFTPSAVISDDAKIEV 873
E+V+ KAA+L E VI K E+
Sbjct: 803 VGIDENVIN----KAAQLLEGLEKKLVIDSKKKKEL 834
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 266/876 (30%), Positives = 446/876 (50%)
Query: 14 DAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSD 73
D + L K+ +T A+ F R +Y++ +G++ATF+A + + ++ +D
Sbjct: 6 DEASDKALLKILKSKSPNTIAI--FSRGEYFSVYGDDATFVATNIFKSDVCVKTFTLSTD 63
Query: 74 ALSSVS-VSKNMFETIARDLLLERTDHTL----ELYEGSGSNWRLVKSGTPGNLGSYEDV 128
+ +S N + + ++ T L ELY W++ K G+PGN +E
Sbjct: 64 NSQQMKYISVNRGQY---EKVVRETIVLLRCSVELYSSEQGEWKMTKRGSPGNTVDFEQE 120
Query: 129 LFANNEMQDTPVI-VALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
+ +++ P++ + + P +N T+ + R++ ++E++D F+ E +
Sbjct: 121 IGVSDQ---APILAIYIHPGDDDNRVTL-CAWDAGNVRIV-ISEYIDTPSFSQTEQCIFG 175
Query: 188 LGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPV 247
L E +L E + + K + TR V ++ K + + D+++ + + E
Sbjct: 176 LCPTEYILVNEGSVAPKAKKIASMFTRMEVHNKQQLKPKSQWSDVIESVHLDYKDEAEKQ 235
Query: 248 RDLVSGFEIAPGALGALLSYAELLSDESNYGNYY-IRKYSLDSYMRLDSAAMRALNVLE- 305
+ + L L S A +DE + Y I Y M +DS A+ AL + +
Sbjct: 236 NENIKE------CLQILHSNA---ADEYSISEKYSIFNYGTHGNMLIDSCAVEALELFQL 286
Query: 306 --SKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTAL 363
+ + + N +L+ ++N+ C G++LL WL +PL ++ IN RLDIV+A ++ +
Sbjct: 287 NYNYLEKSNNLTLYNVLNK-CKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFENQTI 345
Query: 364 RQDLRQH-LKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEG--QFSS 420
RQ LR L R+ D +L L R+ LQ + + YQ++ L + L Q QF+
Sbjct: 346 RQKLRDSILARMPDCSQLARRL-MRKCTLQDLNRFYQAATLLETVEMQLIQLSEAEQFAP 404
Query: 421 LIKERYLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQES 479
I + + + +F L + D D + EN E + + + + + E
Sbjct: 405 SINRLLKSEITEILKK--VERFQVLCDEFFDFDYEKENKEIRVRVDFVPEIQEISEKLEQ 462
Query: 480 LERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETR 539
+ER L K+ ++ + D LKLDK +Q+G FR+T KEE IRKK +LET
Sbjct: 463 MERVAEKLRKKYSAKFEC--DN-LKLDKNSQYGFYFRVTLKEEKSIRKK---DVHILETT 516
Query: 540 K-DGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDV 598
K GVKF+ +L + D++ + +Y ++E+++ + + A F + ++A +++ LDV
Sbjct: 517 KGSGVKFSVGELSDINDEFLEFHLKYTRAEEEVISMLCKKAEEFIPLIPAMAQLIATLDV 576
Query: 599 LLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWF 658
+S + A++ YTRP++ P + L+ RHP +E FIPND ++ K
Sbjct: 577 FVSLSTFAATSSGIYTRPNLLPLGSKRLELKQCRHPVIEGNSEKPFIPND--VVLDKCRL 634
Query: 659 QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVST 718
I+TG NMGGKST++R ++IL+AQ+GSFVPC A+ISV D IF RVGA D Q +G+ST
Sbjct: 635 IILTGANMGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGIST 694
Query: 719 FMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778
FM EML+ ++IL+ AT S ++IDELGRGTST+DGFG+A AI + ++ I+ ++FATHF
Sbjct: 695 FMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCLSIFATHF 754
Query: 779 HELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEF 838
HE+ LA + G + I++ ++ MLYKV G SFG+ VA+
Sbjct: 755 HEMGKLAEQP----------GAVALQMGVQIENN--EIHMLYKVFEGVAQCSFGLQVAKM 802
Query: 839 ANFPESVVTLAREKAAEL-EDFTPSAVISDDAKIEV 873
E+V+ KAA+L E VI K E+
Sbjct: 803 VGIDENVIN----KAAQLLEGLEKKLVIDSKKKKEL 834
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 217/636 (34%), Positives = 371/636 (58%)
Query: 282 IRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL 341
+ + + D+ M ++ A+ L++ K K +LF +NRT T +G++++ W+KQPL
Sbjct: 1 MEEVTTDNAMIIEEDAIEGLHLFGDK----KEMTLFKHLNRTHTK-IGEKMIKEWIKQPL 55
Query: 342 LDVNEINARLDIVQAFVDDTALRQDLR-QHLKRISDIERLMHNLEKRRAGLQQIVKLYQS 400
+D ++IN RL++V+ F D++ +R ++ + L I D+E+L+ + K + L+ IVKLY++
Sbjct: 56 IDKDKINKRLELVEGFYDNSGIRLKIKNEELAIIPDLEKLIKGINK--SDLESIVKLYEA 113
Query: 401 SIRLPY-IRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGE 459
+R+ I+ L++ + S+ KE ++PLE +T++ + KF +V T +D+++ +N
Sbjct: 114 -VRISKNIKEELKEMNNK--SIEKE-IIEPLEKITEE--MEKFEEMVVTLIDIEETQNHV 167
Query: 460 YMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITK 519
+ I +D GL ++ + +E +Q A+DL++ DK ++ + R++K
Sbjct: 168 FKIREDFDEGLQKIRESHKKVEELFEKCLEQAANDLNIKTDKIKIVEHNNNL--ILRVSK 225
Query: 520 KEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTA 579
E +++K ++ +++T K KFT +++ L + K+ + + K+ + + +
Sbjct: 226 SNEKEVKKN--KKYTIIQTLKGECKFTFKEMQTLNVKRDKLKLKEEEINKKFIEEINKVV 283
Query: 580 VTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQ 639
+ E F+ L M+ +D + SFA ++ Y++P I + G I + +RHP +E
Sbjct: 284 EGYKEKFQELENMIGYIDCIQSFATVSIDNNQGYSKPTIYESEKGIIKIIKARHPLIENN 343
Query: 640 DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVR 699
+FI ND + R ++ FQIITGPNMGGKST++R +G+ ++MAQ+G F+PC A IS+
Sbjct: 344 SINSFIENDIDIDRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMFIPCSEAHISIC 403
Query: 700 DCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWA 759
D I R+GAGD + G+STFM EM +T+ I+K +T SL++IDELGRGTSTYDGFG+AWA
Sbjct: 404 DKIMCRIGAGDNIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFGIAWA 463
Query: 760 ICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTML 819
I E+L +I +FATHFHE+T L K++ GV N HV A D ++L +
Sbjct: 464 ISEYLAIDIGCYCVFATHFHEITGLE---------KRVTGVINKHVEA--DIIDKQLVLK 512
Query: 820 YKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKR 879
YK+ G+ DQS I+VAE+A+FP VV A+ KA EL+ P + KIE+ + +
Sbjct: 513 YKINNGSTDQSLAIYVAEWADFPHEVVESAKRKAKELDLDQPDS----KRKIELFTNKIP 568
Query: 880 ISD---PN----DMSRGAARAHQFLKEFSDMPLETM 908
+ D P D+ G + QF+ ++ P + +
Sbjct: 569 LLDDEIPQITSEDILNGKSIISQFIHDYKSTPSDQL 604
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 709 (254.6 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 164/444 (36%), Positives = 256/444 (57%)
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIH 485
+L +E D D + K L+ + D D L +S + + + + +E I+
Sbjct: 355 FLKLIELTVDFDQIIKNQFLISPNFD-DNL----MALSKEKEEIYKQILHHRSEVEEDIN 409
Query: 486 SLHK---QTASDLDLPVDKA-----LKL-DKGTQFGHVFRITKKEEPKIRKKLTTQFIVL 536
L K Q+ ++ ++ + + +KL D T +FR KK+ I+++ T + +
Sbjct: 410 YLKKGDKQSKNNKNISSNNSGMKEDVKLIDCNTNV-FLFRAVKKDIIFIQQRKKT-YNQV 467
Query: 537 ETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSEL 596
K+ + F KL+ L QYQ VL Y Q+ L N+ I+ A ++ E F L+ ++S++
Sbjct: 468 RVNKNEILFNTNKLRDLCKQYQYVLHSYNTSQEHLANKAIEVASSYWEPFNKLSKIISQI 527
Query: 597 DVLLSFADLASSCPTPYTRPDINPPDVGDII-LEGSRHPCVEAQ--DWVNFIPNDCKLIR 653
D+ SFA + S C + Y RP + G ++ ++ SRHP VEA NFIPND + +
Sbjct: 528 DIFCSFAYVISQCISTYVRPIVEQN--GKVLEIKNSRHPLVEANYLQIKNFIPNDIHMDK 585
Query: 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQL 713
+ IITGPNMGGKST+IRQ+ + LMA +G FVP A I + I R+G+ D QL
Sbjct: 586 ENNRLNIITGPNMGGKSTYIRQIAIISLMAHIGCFVPSTYAKIPIFSQIMCRIGSSDIQL 645
Query: 714 RGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTL 773
+G+STF EM+E ++I+K A +L+IIDELGRGTSTY+GFG++W++ +L+ I+ L
Sbjct: 646 KGISTFFSEMIEVSAIIKNADSDTLVIIDELGRGTSTYEGFGISWSVANYLLNNIKCLCL 705
Query: 774 FATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGI 833
FATHFHE++ L E+A V+N HVSA ID +K++ LY+++ G D+S+G+
Sbjct: 706 FATHFHEISNLEDEHA---------AVSNNHVSAKIDEAKKKISFLYEIKKGFADKSYGV 756
Query: 834 HVAEFANFPESVVTLAREKAAELE 857
HVA+ A P+ V+ + EK+ ELE
Sbjct: 757 HVAQIAKLPQKVIDKSFEKSKELE 780
Score = 204 (76.9 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 68/272 (25%), Positives = 131/272 (48%)
Query: 138 TPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECL-LP 196
T ++V+L FR N +G+ + T L+E++++ HFT +ES L+ + LP
Sbjct: 5 TKLLVSLISEFRNNIRYVGICIYNNTTNEFSLSEYIENDHFTTLESILIQTNPDSLIYLP 64
Query: 197 TEAVKSSE-----CKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLV 251
+ ++ C L + + E L+ D V+ V + +L
Sbjct: 65 CNNILDNKRINLICNLCEIKLCELNKDIFQIMSIETDLEKLINVNDD-VKNYVSFL-NLT 122
Query: 252 SGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLE--SKTD 309
G + AL +++ Y LL+++S ++ Y++ Y++LD AA+ +LN+ SK
Sbjct: 123 LGCK----ALSSIIKYLNLLNEDSAINKCTLKWYNISKYVKLDKAAICSLNINTYISKEQ 178
Query: 310 AN----------KN-----FSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIV 354
N +N +L+ +N+ C +G+R L W+ P+ D +IN RLD+V
Sbjct: 179 KNGIGGSQQTLSQNHGGNTMTLYKFLNK-CKTKIGERKLLKWIMHPIRDEKKINQRLDMV 237
Query: 355 QAFVDDTALRQDLR-QHLKRISDIERLMHNLE 385
+ DD ALR ++ ++L+++ D++ ++ L+
Sbjct: 238 EIMNDDQALRSMIQGEYLRKVCDLDLIIKKLK 269
Score = 147 (56.8 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 44/157 (28%), Positives = 77/157 (49%)
Query: 391 LQQIVKLYQSSIRLPYIRSALQQYEG-----QFSSLIKERYLDPLESLTDDDHLNKFIAL 445
++ +VKLY + I I AL +Y ++E ++ PL+S+ L F+ L
Sbjct: 301 IEDLVKLYDTVIASKNIYHALDEYNNGTQKKNTKKTLEENFIIPLKSIIIS--LTSFLKL 358
Query: 446 VETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLP-VDKALK 504
+E +VD DQ+ +++IS ++D L AL E+E + +QI LH ++ + D+ + K K
Sbjct: 359 IELTVDFDQIIKNQFLISPNFDDNLMALSKEKEEIYKQI--LHHRSEVEEDINYLKKGDK 416
Query: 505 LDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKD 541
K + KE+ K+ T F+ +KD
Sbjct: 417 QSKNNKNISSNNSGMKEDVKLIDCNTNVFLFRAVKKD 453
Score = 46 (21.3 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 27/133 (20%), Positives = 54/133 (40%)
Query: 473 LKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQ 532
+ N+ ++L I + + DLDL + K LK+ + ++ K +
Sbjct: 239 IMNDDQALRSMIQGEYLRKVCDLDLIIKK-LKIANNIVKNN--NMSDNHGAKQNRSFGNS 295
Query: 533 FIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKN-CQKELVNRVIQT--AVTFSEIFKSL 589
T +D VK +T + + L+EY N QK+ + ++ + I SL
Sbjct: 296 NNKC-TIEDLVKLYDTVIASKNIYH--ALDEYNNGTQKKNTKKTLEENFIIPLKSIIISL 352
Query: 590 ATMLSELDVLLSF 602
+ L +++ + F
Sbjct: 353 TSFLKLIELTVDF 365
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 182/521 (34%), Positives = 299/521 (57%)
Query: 367 LRQHLKRISDIERLMHNLE-KRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKER 425
L +LK I+ + N + L+ IVKLY + + I L G+ + E
Sbjct: 38 LNHYLKEINKNNDIRVNSKYNEEMILKDIVKLYYAILDFKQIYFLLVSINGKHKETLNEI 97
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLDQLE-NGEYMISSSYDTGLSALKNEQESLERQI 484
+ PL + + +KF+ ++E ++DL ++E N Y+IS +D+ L + NE+ +L ++I
Sbjct: 98 LIKPLHDILNK--FSKFLDMIEMTIDLKEIEENKVYLISKHFDSELEQIYNEKSALMKKI 155
Query: 485 HSLHKQTASDL-----DLPVDKALKLD----KGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ + DL D KA++ D + G +FR+ KK+ P ++++ +++
Sbjct: 156 KNHKEDVEKDLFSDKHDRRNKKAMREDIRLIECNTNGFLFRVCKKDCPLVQQQ-KKKYLP 214
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
+ K+ FT LK L +Y+ L Y Q E+V + I T++ + + ++S
Sbjct: 215 IRMNKNEFLFTTNTLKNLCREYEHCLSIYNTLQSEIVKKTICAVSTYTPVIEKFIDVVST 274
Query: 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWV-NFIPNDCKLIRG 654
LDVL+SF+ + + P Y RP + + ++I++ SRHP +E Q + NFIPND + +
Sbjct: 275 LDVLVSFSVVCYNSPFTYVRPAL-VKNGENVIMKKSRHPLLELQHNISNFIPNDIHMNKN 333
Query: 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLR 714
KS I+TGPNMGGKST+IRQ+ + ++AQ+G FVPCD I + I RVGA D QL+
Sbjct: 334 KSRLIIVTGPNMGGKSTYIRQIAIICILAQIGMFVPCDFCEIPIFTQIMCRVGASDFQLK 393
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774
G+STF+ EM+E ++I+K A + SLII+DELGRGTSTY+G G++W+I +++++ I+ LF
Sbjct: 394 GISTFLSEMIEASAIIKNADNNSLIIVDELGRGTSTYEGLGISWSIGKYILDNIKCFCLF 453
Query: 775 ATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIH 834
ATHFHE++ +A+ Q GV N H+ ID ++K+ LY+++ GA ++S+G++
Sbjct: 454 ATHFHEMSNIAY---------QCEGVINRHIETIIDQKNKKICFLYEIKDGASNKSYGVN 504
Query: 835 VAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGS 875
VAE A P+ V+ A EK ELE + + I+ S
Sbjct: 505 VAEIAKLPKDVIQKAYEKVEELESAENKYYLKEKLNIDTSS 545
Score = 177 (67.4 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 51/172 (29%), Positives = 91/172 (52%)
Query: 346 EINARLDIVQAFVDDTALRQDLR-QHLKRISDIERLMHNLEKRRAG-------------- 390
EIN RL+IV+ F+D+ +R + +LKRI ++++L H L++
Sbjct: 3 EINQRLNIVETFIDEDDIRNSVFCNYLKRIPELDKLNHYLKEINKNNDIRVNSKYNEEMI 62
Query: 391 LQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSV 450
L+ IVKLY + + I L G+ + E + PL + + +KF+ ++E ++
Sbjct: 63 LKDIVKLYYAILDFKQIYFLLVSINGKHKETLNEILIKPLHDILNK--FSKFLDMIEMTI 120
Query: 451 DLDQLE-NGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDK 501
DL ++E N Y+IS +D+ L + NE+ +L ++I + HK+ + DL DK
Sbjct: 121 DLKEIEENKVYLISKHFDSELEQIYNEKSALMKKIKN-HKEDV-EKDLFSDK 170
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 210/627 (33%), Positives = 326/627 (51%)
Query: 255 EIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNF 314
E A + A L YA+ +R YS +M LDS +R L ++++ D
Sbjct: 245 EFAVYSAWAALEYAKTTQMRDLTHINTLRTYSNTEFMILDSITLRNLEIVKNVRDEGDEN 304
Query: 315 SLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRI 374
SL+ +N T T MG R L WL +PLL V +IN RLD ++ +D+ LR D+R L +
Sbjct: 305 SLYRTLNCTRTP-MGNRTLKKWLLKPLLSVEKINPRLDAIEELAEDSLLRYDIRDWLSDV 363
Query: 375 SDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLT 434
DIERL+ + A + +V L +S +P +R +L + + +F ++KE + L S +
Sbjct: 364 RDIERLVGRIVYGNASARDLVALKKSLGVVPSLRDSLLE-KARFE-MLKE-IAEGLASFS 420
Query: 435 DDDHLNKFIAL-VETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTAS 493
+ + L + I + + + E G MI S Y L L++ + ++ I + ++
Sbjct: 421 ELEELAEMIEIAIMDEPPVSVREGG--MIKSGYSPELDELRDISSNSKQWIAAFQQKERE 478
Query: 494 DLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKL 553
+ K+LK+ FG+ +T ++ + +I +T + +F +LK+
Sbjct: 479 RSGI---KSLKVGYNKVFGYYIEVTHANSSQVPE----DYIRKQTMANAERFFTPELKEK 531
Query: 554 GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPY 613
E+ + E+ + +T S + A + LDVL S A+ + Y
Sbjct: 532 ESLILTANEKAVALEYEIFAEITRTLSARSRELQETAERIGTLDVLASLAEATEN--NNY 589
Query: 614 TRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFI 673
TRP + D +I +G RHP VE+ F+PND ++ ++ F ++TGPNM GKST++
Sbjct: 590 TRPQLTE-DCKILIRDG-RHPVVESTVSGGFVPNDTEMDCKENQFLLVTGPNMAGKSTYM 647
Query: 674 RQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733
RQ + +MAQVGSFVP AS+ + D +F R+GA D G STFM EM+E A+IL A
Sbjct: 648 RQTALIAIMAQVGSFVPASYASVGIIDQVFTRIGAFDDLASGQSTFMVEMVELANILNNA 707
Query: 734 TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE--EIRAPTLFATHFHELTALAHENANE 791
+ +SL+++DE+GRGTSTYDG+ +A A+ E L ++ LFATH+H+LTAL E
Sbjct: 708 SPKSLVLLDEIGRGTSTYDGYSIAKAVVEFLHNRGKVGIRALFATHYHQLTAL------E 761
Query: 792 FNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLARE 851
K+ V NYH++ D +L L K+ PGA D+S+GIHVA A PE V+ A E
Sbjct: 762 EKLKR---VKNYHIAVKEDG--HELVFLRKIVPGATDRSYGIHVARLAGVPEKVIERANE 816
Query: 852 KAAELEDFTPSAVISDDAKIEVGSKRK 878
ELE V+ + E G K+K
Sbjct: 817 ILKELER---ENVLEEAEDGENGKKKK 840
Score = 296 (109.3 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 126/503 (25%), Positives = 221/503 (43%)
Query: 37 FFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLLLER 96
FF D+Y + GE+A IAK T TA + TG + + + + +T L+ +
Sbjct: 25 FFRMGDFYESFGEDAKTIAKELEITLTARGKDRTG-ERMPLAGIPYHAIDTYLPRLINKG 83
Query: 97 TDHTL-ELYEGSGSNWRLVKSG-----TPGNLGSYEDVLFANNEMQDTPVIVALFPNFR- 149
+ E E +VK G TPG + + +F++ +
Sbjct: 84 YKVAICEQLEDPKKAKGVVKRGVVRVVTPGT--AIDSSMFSDASNNYLMAVAGREGGKSG 141
Query: 150 ENG---CTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECK 206
+NG G+ ++D++ +F D +F + S L + EC+LP +SE
Sbjct: 142 KNGEKEMEFGISFLDISTGEFLTTQFTDSENFDKLLSELARMHPAECILPPSLYGNSE-- 199
Query: 207 TLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDL-VSGFEIAPGALGALL 265
L L R ++ E F T + + L V + + E A + A L
Sbjct: 200 -LTGKL-REHTIVQEFAPEVFGTEEAGEKLK--THFGVATLEGMGCQKLEFAVYSAWAAL 255
Query: 266 SYAEL--LSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRT 323
YA+ + D ++ +R YS +M LDS +R L ++++ D SL+ +N T
Sbjct: 256 EYAKTTQMRDLTHINT--LRTYSNTEFMILDSITLRNLEIVKNVRDEGDENSLYRTLNCT 313
Query: 324 CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHN 383
T MG R L WL +PLL V +IN RLD ++ +D+ LR D+R L + DIERL+
Sbjct: 314 RTP-MGNRTLKKWLLKPLLSVEKINPRLDAIEELAEDSLLRYDIRDWLSDVRDIERLVGR 372
Query: 384 LEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFI 443
+ A + +V L +S +P +R +L + + +F ++KE + L S ++ + L + I
Sbjct: 373 IVYGNASARDLVALKKSLGVVPSLRDSLLE-KARFE-MLKE-IAEGLASFSELEELAEMI 429
Query: 444 AL-VETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKA 502
+ + + E G MI S Y L L++ + ++ I + ++ + K+
Sbjct: 430 EIAIMDEPPVSVREGG--MIKSGYSPELDELRDISSNSKQWIAAFQQKERERSGI---KS 484
Query: 503 LKLDKGTQFGHVFRITKKEEPKI 525
LK+ FG+ +T ++
Sbjct: 485 LKVGYNKVFGYYIEVTHANSSQV 507
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 692 (248.7 bits), Expect = 2.7e-76, Sum P(3) = 2.7e-76
Identities = 204/630 (32%), Positives = 311/630 (49%)
Query: 251 VSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDA 310
+ G +A A GALL YA++ + +R Y +YM LD R L +LES
Sbjct: 295 LDGRPLATRAAGALLQYAQVTQRQRVSQLRALRVYHTGAYMLLDPQTRRNLELLESGGRQ 354
Query: 311 NKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQH 370
SL +++RTCTA MG RLL W+ QPL+ + + R V V +T R ++R
Sbjct: 355 GAKASLIAVLDRTCTA-MGARLLRRWITQPLIVIEPLQVRQHAVARLVAETMARLEVRSA 413
Query: 371 LKRISDIERLMH------------NLEKRRAGLQQIVKLYQS-SIRLPYIRSALQQYEGQ 417
L + D+ER ++ ++ + RA L+++ + Q+ LP + +A E
Sbjct: 414 LADLPDMERALNRIAQGITVATPRDMTQLRAALRKLPAVAQAVQALLPDLLAAEMPGEPP 473
Query: 418 FSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENG----EYMISSSYDTGLSAL 473
+ LD LE DDD AL+ +S L E G +I +D L AL
Sbjct: 474 LVFDVCADVLDLLERALDDDPP----ALLGSSNYLRAAEEGGERPRRVIRPGFDQRLDAL 529
Query: 474 KNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQF 533
+ I L + + ++LK+ FG+ I++ + K+ + +
Sbjct: 530 IRASRHAQEFIDRLESKERERTGI---RSLKVGYNQVFGYYIEISRAVDAKL---IPAHY 583
Query: 534 IVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATML 593
+T + ++ +LK + + ++++ R+ + ++ +
Sbjct: 584 ERKQTLVNAERYVTEELKYYEGLLSDARLKLVDLERDIFQRLCDELQPHLDRLRATIAAV 643
Query: 594 SELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIR 653
+ +D L + A++A Y +P + V + ++ RHP VE FI ND L
Sbjct: 644 ARIDALAALAEVAVR--GRYVQPRLRTDRV--LRIKQGRHPVVERTLSEPFIGNDIDLDG 699
Query: 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQL 713
++ IITGPNM GKSTF+RQV + LMAQ+GSFVP D A I + D IF R+GA D
Sbjct: 700 EQAQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIA 759
Query: 714 RGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR--AP 771
G STFM EM ETA++L +T RSLII+DE+GRGTSTYDG +A A+ E++ + R
Sbjct: 760 TGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHDHPRLGCR 819
Query: 772 TLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSF 831
TLFATH+HEL AL E + V NYH++A ++ R + L+++ PG D+S+
Sbjct: 820 TLFATHYHELIALERE---------LPRVRNYHMAA-VERDGR-VVFLHELRPGGADRSY 868
Query: 832 GIHVAEFANFPESVVTLAREKAAELEDFTP 861
GIHVAE A P V+ A A+LE P
Sbjct: 869 GIHVAELAGIPPEVIRRASALLADLEGQRP 898
Score = 69 (29.3 bits), Expect = 2.7e-76, Sum P(3) = 2.7e-76
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 150 ENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPT-EAVKSSECKTL 208
E G +GL Y DL+ AEF D +++ L L E L+P EA++ + +
Sbjct: 164 EQG-KVGLAYADLSTGEFAAAEFTDARALMQLQAELARLSPAEVLVPDDEALRLPNLEPV 222
Query: 209 RDALTRCGVMLTERKK 224
+ L++ LT+ ++
Sbjct: 223 QARLSQDLAPLTKEER 238
Score = 39 (18.8 bits), Expect = 2.7e-76, Sum P(3) = 2.7e-76
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 4 EQNKLPELKLDAKQARGFLSFYKTLPNDTRAV 35
+ KL E DA F FY+T +D + +
Sbjct: 12 QYRKLKEEAADAILLFRFGDFYETFDDDAKLI 43
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 583 (210.3 bits), Expect = 6.1e-72, Sum P(2) = 6.1e-72
Identities = 154/401 (38%), Positives = 211/401 (52%)
Query: 461 MISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKK 520
+I+ Y + L L++ + I L Q + + +LK+ FG+ +TK
Sbjct: 429 IIAQGYHSELDELRSISREGKGFIARLEAQEKARTGI---SSLKVRYNKVFGYYIEVTKS 485
Query: 521 EEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAV 580
I +I +T + +F +LK+ ++ + + L + Q
Sbjct: 486 NLSAI----PDDYIRRQTLANAERFITPELKEYEEKVLGAEDRIVELEYALFQDIRQRVA 541
Query: 581 TFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGD-IILEGSRHPCVEAQ 639
E A L+ LDVL + AD+A Y RP + D GD I++ G RHP VEA
Sbjct: 542 AQGERIARTADRLATLDVLAALADVAHD--HRYVRPTV---DEGDAIVVTGGRHPVVEAL 596
Query: 640 DWVN-FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISV 698
+ F+ ND +L G++ IITGPNM GKSTF+RQV + +LMAQ GSFVP D ASI V
Sbjct: 597 NRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPADEASIGV 656
Query: 699 RDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAW 758
D IF RVGA D RG STFM EM+ETA+IL+ AT RSL+++DE+GRGTST+DG +AW
Sbjct: 657 VDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVSIAW 716
Query: 759 AICEHL--VEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKL 816
A+ E+L E A TLFATH+HELT LA T+ V N V D ++
Sbjct: 717 AVAEYLHDTERCAAKTLFATHYHELTELAV-------TRNRVKNCNVAVKEWND----QV 765
Query: 817 TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
L K+ G S+GI VA A P+ V+ A+E LE
Sbjct: 766 IFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLE 806
Score = 249 (92.7 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 90/347 (25%), Positives = 151/347 (43%)
Query: 260 ALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGL 319
A+ A+L Y + Y++ Y ++ LD ++ R L + + D + SL GL
Sbjct: 237 AVAAVLHYLQQTQKGDVRHISYLQAYRTQEFLVLDESSRRNLELNATIGDGKRRGSLLGL 296
Query: 320 MNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIER 379
++RT TA MG R L W+ PL+ + +IN RLD V+ V D RQ +R L + D+ER
Sbjct: 297 LDRTVTA-MGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRAALDGVYDLER 355
Query: 380 LMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHL 439
L + A + +V L S +RLP + + L +S + R D ++ L D + L
Sbjct: 356 LNGRISLASASAKDLVALRASLVRLPSLIALLTPA----ASTLLARLRDGIDLLADVEEL 411
Query: 440 NKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPV 499
+ + L E G +I+ Y + L L++ + I L Q + +
Sbjct: 412 IGRGIVPDPPFVLR--EGG--IIAQGYHSELDELRSISREGKGFIARLEAQEKARTGI-- 465
Query: 500 DKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQK 559
+LK+ FG+ +TK I +I +T + +F +LK+ ++
Sbjct: 466 -SSLKVRYNKVFGYYIEVTKSNLSAI----PDDYIRRQTLANAERFITPELKEYEEKVLG 520
Query: 560 VLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
+ + L + Q E A L+ LDVL + AD+A
Sbjct: 521 AEDRIVELEYALFQDIRQRVAAQGERIARTADRLATLDVLAALADVA 567
Score = 211 (79.3 bits), Expect = 6.1e-72, Sum P(2) = 6.1e-72
Identities = 102/416 (24%), Positives = 176/416 (42%)
Query: 34 AVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDAL-------SSVSVSKNMFE 86
A+ FF D+Y ++A ++ T T+ + G G+D S+ + E
Sbjct: 21 AILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGADIPLCGVPFHSAAPYIAKLVE 80
Query: 87 TIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFP 146
+ + E+ + + +G +VK TPG + E + N +++LFP
Sbjct: 81 AGEKVAICEQVEDPKSV-KGIVKR-EVVKVVTPGLVIDAESLSPKENNY-----LLSLFP 133
Query: 147 NFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECK 206
G+ Y+DL+ + E D + E A V +E L+P + +
Sbjct: 134 GPDR----WGVAYLDLSTGDFRVTE-TDSADAAWAEVACV--NPREILMPL-SFRDGGAG 185
Query: 207 TLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSG---FEIAPGALGA 263
+ R L G ML+ + + + +R+VR +G + A+ A
Sbjct: 186 SERPDLA-AGRMLSYVDEWVYDA----EYAERMVRNHFGVASAEAAGCGSMDCGLRAVAA 240
Query: 264 LLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRT 323
+L Y + Y++ Y ++ LD ++ R L + + D + SL GL++RT
Sbjct: 241 VLHYLQQTQKGDVRHISYLQAYRTQEFLVLDESSRRNLELNATIGDGKRRGSLLGLLDRT 300
Query: 324 CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHN 383
TA MG R L W+ PL+ + +IN RLD V+ V D RQ +R L + D+ERL
Sbjct: 301 VTA-MGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRAALDGVYDLERLNGR 359
Query: 384 LEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHL 439
+ A + +V L S +RLP + + L +S + R D ++ L D + L
Sbjct: 360 ISLASASAKDLVALRASLVRLPSLIALLTPA----ASTLLARLRDGIDLLADVEEL 411
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 583 (210.3 bits), Expect = 6.1e-72, Sum P(2) = 6.1e-72
Identities = 154/401 (38%), Positives = 211/401 (52%)
Query: 461 MISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKK 520
+I+ Y + L L++ + I L Q + + +LK+ FG+ +TK
Sbjct: 429 IIAQGYHSELDELRSISREGKGFIARLEAQEKARTGI---SSLKVRYNKVFGYYIEVTKS 485
Query: 521 EEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAV 580
I +I +T + +F +LK+ ++ + + L + Q
Sbjct: 486 NLSAI----PDDYIRRQTLANAERFITPELKEYEEKVLGAEDRIVELEYALFQDIRQRVA 541
Query: 581 TFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGD-IILEGSRHPCVEAQ 639
E A L+ LDVL + AD+A Y RP + D GD I++ G RHP VEA
Sbjct: 542 AQGERIARTADRLATLDVLAALADVAHD--HRYVRPTV---DEGDAIVVTGGRHPVVEAL 596
Query: 640 DWVN-FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISV 698
+ F+ ND +L G++ IITGPNM GKSTF+RQV + +LMAQ GSFVP D ASI V
Sbjct: 597 NRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPADEASIGV 656
Query: 699 RDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAW 758
D IF RVGA D RG STFM EM+ETA+IL+ AT RSL+++DE+GRGTST+DG +AW
Sbjct: 657 VDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVSIAW 716
Query: 759 AICEHL--VEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKL 816
A+ E+L E A TLFATH+HELT LA T+ V N V D ++
Sbjct: 717 AVAEYLHDTERCAAKTLFATHYHELTELAV-------TRNRVKNCNVAVKEWND----QV 765
Query: 817 TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
L K+ G S+GI VA A P+ V+ A+E LE
Sbjct: 766 IFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLE 806
Score = 249 (92.7 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 90/347 (25%), Positives = 151/347 (43%)
Query: 260 ALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGL 319
A+ A+L Y + Y++ Y ++ LD ++ R L + + D + SL GL
Sbjct: 237 AVAAVLHYLQQTQKGDVRHISYLQAYRTQEFLVLDESSRRNLELNATIGDGKRRGSLLGL 296
Query: 320 MNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIER 379
++RT TA MG R L W+ PL+ + +IN RLD V+ V D RQ +R L + D+ER
Sbjct: 297 LDRTVTA-MGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRAALDGVYDLER 355
Query: 380 LMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHL 439
L + A + +V L S +RLP + + L +S + R D ++ L D + L
Sbjct: 356 LNGRISLASASAKDLVALRASLVRLPSLIALLTPA----ASTLLARLRDGIDLLADVEEL 411
Query: 440 NKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPV 499
+ + L E G +I+ Y + L L++ + I L Q + +
Sbjct: 412 IGRGIVPDPPFVLR--EGG--IIAQGYHSELDELRSISREGKGFIARLEAQEKARTGI-- 465
Query: 500 DKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQK 559
+LK+ FG+ +TK I +I +T + +F +LK+ ++
Sbjct: 466 -SSLKVRYNKVFGYYIEVTKSNLSAI----PDDYIRRQTLANAERFITPELKEYEEKVLG 520
Query: 560 VLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
+ + L + Q E A L+ LDVL + AD+A
Sbjct: 521 AEDRIVELEYALFQDIRQRVAAQGERIARTADRLATLDVLAALADVA 567
Score = 211 (79.3 bits), Expect = 6.1e-72, Sum P(2) = 6.1e-72
Identities = 102/416 (24%), Positives = 176/416 (42%)
Query: 34 AVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDAL-------SSVSVSKNMFE 86
A+ FF D+Y ++A ++ T T+ + G G+D S+ + E
Sbjct: 21 AILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGADIPLCGVPFHSAAPYIAKLVE 80
Query: 87 TIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFP 146
+ + E+ + + +G +VK TPG + E + N +++LFP
Sbjct: 81 AGEKVAICEQVEDPKSV-KGIVKR-EVVKVVTPGLVIDAESLSPKENNY-----LLSLFP 133
Query: 147 NFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECK 206
G+ Y+DL+ + E D + E A V +E L+P + +
Sbjct: 134 GPDR----WGVAYLDLSTGDFRVTE-TDSADAAWAEVACV--NPREILMPL-SFRDGGAG 185
Query: 207 TLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSG---FEIAPGALGA 263
+ R L G ML+ + + + +R+VR +G + A+ A
Sbjct: 186 SERPDLA-AGRMLSYVDEWVYDA----EYAERMVRNHFGVASAEAAGCGSMDCGLRAVAA 240
Query: 264 LLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRT 323
+L Y + Y++ Y ++ LD ++ R L + + D + SL GL++RT
Sbjct: 241 VLHYLQQTQKGDVRHISYLQAYRTQEFLVLDESSRRNLELNATIGDGKRRGSLLGLLDRT 300
Query: 324 CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHN 383
TA MG R L W+ PL+ + +IN RLD V+ V D RQ +R L + D+ERL
Sbjct: 301 VTA-MGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRAALDGVYDLERLNGR 359
Query: 384 LEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHL 439
+ A + +V L S +RLP + + L +S + R D ++ L D + L
Sbjct: 360 ISLASASAKDLVALRASLVRLPSLIALLTPA----ASTLLARLRDGIDLLADVEEL 411
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 718 (257.8 bits), Expect = 5.1e-70, P = 5.1e-70
Identities = 206/733 (28%), Positives = 356/733 (48%)
Query: 154 TIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALT 213
+ G+ ++D + + EF DD H T +++ L + KE +L + + ++ ++
Sbjct: 518 SFGICFIDTSTGGFHMCEFTDDIHRTKLDTLLTQVRPKELILEKSKISQKSIRAIKYCVS 577
Query: 214 RCGVMLTERKKTEFKTRDLVQ-DL---DRL---VRGSVEPVRDLVSGFEIAPGALGALLS 266
+ + TEF + V+ ++ D + G+ + ++ +S +A A GAL
Sbjct: 578 SSSIWNFIKPYTEFWDNERVEREIIAGDYFKNGLEGAPKILKSYLSEKPLAISAFGALFW 637
Query: 267 YAELLS---DESNYGNYYIRKYSLDSY-MRLDSAAMRALNVLESKTDANKNFSLFGLMNR 322
Y L D + GN+ S S + ++ ++ L + + D +LF L+ R
Sbjct: 638 YLRQLKLDKDMCSMGNFDEYDASQQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCR 697
Query: 323 TCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMH 382
C GKRL H WL PL INARLD+V+ D+ +R + L ++ D+ERL+
Sbjct: 698 -CVTPFGKRLFHTWLCHPLRSGTAINARLDVVELIADNPVIRDTIWGFLHKLPDLERLIS 756
Query: 383 NLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKF 442
+ R+ V++ + R I SA Q +F + + L E + ++ +
Sbjct: 757 RVHAGRSKPADFVRVLEGFQR---INSAFDQLREEFMEVAEGTLLG--EIIQSAPNMKEE 811
Query: 443 IALVETSVDLDQL-ENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDK 501
+ + + + E G + ++ + Q L+ ++++L +Q L
Sbjct: 812 LEAWTRAFNWQKASEEGVFEPEIGFEAEYDTSQKYQSELKNELYALLEQYKKQLRCSSLN 871
Query: 502 ALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVL 561
+ K V+++ E P K+ + + K ++ N +L+K + +K+L
Sbjct: 872 FKNIGK-----EVYQV---EVPS-DVKVPVNWCKMSGTKKTNRYYNDELRK---KIKKLL 919
Query: 562 EEYKNCQKELVNRVIQTA-VTFSEIFKSLATML---SELDVLLSFADLASSCPTPYTRPD 617
E + +++R+ + + F ++ ++ + +D S + A++ PY RP+
Sbjct: 920 EA-EELHLAIMSRMQEKFYIRFDSNYEQWLALIKYTASIDCFFSLSQAAAALGEPYCRPE 978
Query: 618 INPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQII-TGPNMGGKSTFIRQV 676
I G + E RHPC+ A F+PND ++ G+S I+ TGPNM GKST +RQV
Sbjct: 979 IIEQKDGHLYFEELRHPCINASAASTFVPNDV-VLGGESPNMIVLTGPNMAGKSTLLRQV 1037
Query: 677 GVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736
+ ++MAQ+G +VP RASI+ I+ R+GA D + STFM E+ ET IL +
Sbjct: 1038 CIAVIMAQLGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPK 1097
Query: 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQ 796
SL+I+DELGRGTSTYDG +A+A+ HLV I F+TH+ L +F +
Sbjct: 1098 SLVILDELGRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCV-------DFMHHR 1150
Query: 797 MVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAEL 856
V + ++A +D R++T LYK+E G C +S+G++VA A PE V+ A EKA+EL
Sbjct: 1151 QVRLMQ--MAAAVDEKIRRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASEL 1208
Query: 857 EDFTPSAV-ISDD 868
E + S + SDD
Sbjct: 1209 EQASASFINASDD 1221
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 202/641 (31%), Positives = 314/641 (48%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M +D A L + + + SL ++ T T+ G RLL L PL D I R
Sbjct: 295 MAIDPATRANLELTRTLAGERRG-SLLDAIDCTVTSA-GSRLLAQRLAAPLTDAPAIARR 352
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSA 410
LD V AFV D+A R+D+R L+ D+ R + L R G + + L I + +
Sbjct: 353 LDAVGAFVADSAAREDIRSILRGAPDMSRALARLSVGRGGPRDLAGLRDGIIAADQVLAR 412
Query: 411 LQQYEG--QFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDT 468
L + + Q + + P L + F ++ + L + + G + Y+
Sbjct: 413 LGELDQPPQEIAAVMAALTRPSRELAAE-----FATALDEQLPLIKRDGG--FVRQGYEP 465
Query: 469 GLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKK 528
L +N +++ + S+ + A D + K LK+ G+ +T + K+
Sbjct: 466 ALDEARNLRDASRLVVASMQARYADDTGV---KGLKIRHNNVLGYFVEVTAQHGDKLMSA 522
Query: 529 -LTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFK 587
L FI +T ++FT ++L ++ + + + E+ R+ A+ S+ +
Sbjct: 523 PLNATFIHRQTLAGQIRFTTSELGEIEAKIANAGDRALGLELEIFERLCAKALEISDDLR 582
Query: 588 SLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEA---QDWVNF 644
+ A + LDV S A LA Y RP+++ +G +E RHP VE ++ F
Sbjct: 583 AAAQGFALLDVATSLAKLAVD--ENYVRPEVDS-SLG-FAIEAGRHPVVEQALKRNGEPF 638
Query: 645 IPNDCKLI------RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISV 698
I N C L G+ W ++TGPNM GKSTF+RQ + L+AQ+GSFVP RA I +
Sbjct: 639 IANACDLSPAPAQKSGQLW--LLTGPNMAGKSTFLRQNALIALLAQIGSFVPATRARIGI 696
Query: 699 RDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAW 758
D +F+RVGA D RG STFM EM+ETA+IL A +R+L+I+DE+GRGT+T+DG +AW
Sbjct: 697 IDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGERALVILDEIGRGTATFDGLSIAW 756
Query: 759 AICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTM 818
A EHL E R TLFATH+HELTAL+ + FN + + +
Sbjct: 757 AAIEHLHESNRCRTLFATHYHELTALSAKLPRMFNA-----------TVRVKEWQGNVVF 805
Query: 819 LYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE--DFTPSA-VISDDAKI-EVG 874
L++V PG+ D+S+GI VA+ A P +V+T A+ A+LE D +A ++DD + V
Sbjct: 806 LHEVLPGSADRSYGIQVAKLAGLPPAVITRAKSVLAKLEAQDRGQTARALADDLPLFAVP 865
Query: 875 SKRKRISDPNDMSRGAARAHQFLKEFSDMPLETMDLKEALE 915
S+ + P + A + L P E +D AL+
Sbjct: 866 SRAAAEAAPPSEAELLMDAVKALHPDEMSPREALDALYALK 906
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 659 (237.0 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
Identities = 177/532 (33%), Positives = 286/532 (53%)
Query: 328 MGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKR 387
MG R L L +PLL++ I RLD V+ V+D LR++LR++LK + D+ERL L
Sbjct: 281 MGARKLKEELTKPLLNLKAIADRLDAVEILVNDYELRENLRENLKNLYDLERLSIKLVCG 340
Query: 388 RAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVE 447
+ ++K+ QS ++ +I++++ + + S L E Y + E + ++K ++V+
Sbjct: 341 TINPKDLIKIKQSLPQIWHIKNSINHVKNK-SVLFAEIYKNLPEMREVYNLIDK--SIVD 397
Query: 448 TSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDK 507
+ + G +I + Y+ + + +E + I + K+ + K+LK++
Sbjct: 398 DP-PVSPKDGG--IIKNGYNPTVDEYRKAREEGQDWIINYEKKERERTGI---KSLKVNY 451
Query: 508 GTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNC 567
FG+ +TK + + +T + +F +LK + E+ N
Sbjct: 452 NKVFGYFIEVTKANLHLVPADYQRK----QTMVNAERFITEELKHYENLILGASEKLANL 507
Query: 568 QKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDII 627
+ EL + + + E K A+ ++ LD L+S A ++ +TRP I V +I
Sbjct: 508 EYELFCEIRSEILKYQEDLKRAASAVALLDFLISLA--VAAIEYDFTRPVITAEPVLEI- 564
Query: 628 LEGSRHPCVEAQ-DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
+ RHP VE NF+PND L ++ +ITGPNM GKST++RQ + +++AQ+G
Sbjct: 565 -KNGRHPVVEKSVGRANFVPNDLYLDTKENSLLLITGPNMAGKSTYMRQAALIVILAQIG 623
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR 746
SFVP + A + + D I R+GA D +G STFM EM+E +IL+ AT RSLI++DE+GR
Sbjct: 624 SFVPAEYARVGLVDKILTRIGATDDLAKGQSTFMVEMIECNNILRNATSRSLILLDEVGR 683
Query: 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806
GTSTYDG +A AI E++ ++I+A TLF+TH+HELT L E + GV N+ V
Sbjct: 684 GTSTYDGISIAEAIIEYIQKKIKARTLFSTHYHELTGLEGE---------IPGVKNFTVL 734
Query: 807 AHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858
+ ++ L+KV PG D+S+GI+VA+ A P VV A E A ED
Sbjct: 735 --VQEKGEEVKFLHKVVPGKTDKSYGIYVAKLAGLPREVVERAYEILARFED 784
Score = 249 (92.7 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 102/430 (23%), Positives = 197/430 (45%)
Query: 182 ESALVALGCKEC---LLPTEAVKSSECKTLRDALTRCG---VMLTERKKTEFKTRDLVQD 235
+ L+AL E L +V + + L + R ++ + K F +D+
Sbjct: 132 KDGLIALAVAEVSTGYLGITSVDEGKIEVLASEIRRLAPTEAVVLKNFKNNFLLKDITGI 191
Query: 236 LDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDE--SNYGNYYIRKYSLDSYMRL 293
++ L + E + G E + A L+SY + + S +G Y +DSY+
Sbjct: 192 VNYLEKLPAEEIEIAFKGPEASKEAYKILISYLKRIEPAVLSIFGQPEF--YQIDSYLYF 249
Query: 294 DSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDI 353
D + + L +L ++ D N + SL G+++ T TA MG R L L +PLL++ I RLD
Sbjct: 250 DESTRKNLEILRNRED-NSS-SLLGIIDFTQTA-MGARKLKEELTKPLLNLKAIADRLDA 306
Query: 354 VQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQ 413
V+ V+D LR++LR++LK + D+ERL L + ++K+ QS ++ +I++++
Sbjct: 307 VEILVNDYELRENLRENLKNLYDLERLSIKLVCGTINPKDLIKIKQSLPQIWHIKNSINH 366
Query: 414 YEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSAL 473
+ + S L E Y + E + ++K ++V+ + + G +I + Y+ +
Sbjct: 367 VKNK-SVLFAEIYKNLPEMREVYNLIDK--SIVDDP-PVSPKDGG--IIKNGYNPTVDEY 420
Query: 474 KNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQF 533
+ +E + I + K+ + K+LK++ FG+ +TK + +
Sbjct: 421 RKAREEGQDWIINYEKKERERTGI---KSLKVNYNKVFGYFIEVTKANLHLVPADYQRK- 476
Query: 534 IVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATML 593
+T + +F +LK + E+ N + EL + + + E K A+ +
Sbjct: 477 ---QTMVNAERFITEELKHYENLILGASEKLANLEYELFCEIRSEILKYQEDLKRAASAV 533
Query: 594 SELDVLLSFA 603
+ LD L+S A
Sbjct: 534 ALLDFLISLA 543
Score = 37 (18.1 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 149 RENGCTIGLGYVDLTKRVLGLAEFLDD 175
RE+ + LG +D T+ +G + ++
Sbjct: 263 REDNSSSLLGIIDFTQTAMGARKLKEE 289
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 210/677 (31%), Positives = 330/677 (48%)
Query: 194 LLPTEAVKSSE--CKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVR-GSVEPVRDL 250
L P+E + E + LR + LT K F + + L L + GS+E
Sbjct: 171 LAPSELLVVDEPVFQQLRPLADDHRIPLTPLGKASFDSMAAEKRLCELYKVGSLEGFGTF 230
Query: 251 VSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDA 310
E++ A+GAL+ Y ++ + + D M++D+A R L + S +
Sbjct: 231 ARA-ELS--AMGALIDYLDITQKGKLPLLQPPVQEAEDRVMQIDAATRRNLELTRSLS-G 286
Query: 311 NKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQH 370
+ SL +++RT T G G RLL L P +++ I+ARL + +D + L DLR
Sbjct: 287 ERGGSLLSVIDRTVTPG-GARLLEQRLGSPSRNLDVIHARLSALDFCIDHSTLAADLRAA 345
Query: 371 LKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPL 430
L++ D++R + L R G + + IR+ L Q E ++L L L
Sbjct: 346 LRKTPDLDRALSRLALDRGGPRDLAA----------IRNGLGQAEA-IAALCDGLELPGL 394
Query: 431 --ESLTDDDHLNKFIALVETSVDLDQ--LENGEYMISSSYDTGLSALKNEQESLERQIHS 486
+ D + ++ + L++T++ + L I+ YD+ L + ++ I
Sbjct: 395 IAGACADLNGFDELLGLLDTALVAEPPLLARDGGFIAPGYDSDLDEARELRDKGRGVIAG 454
Query: 487 LHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPK-IRKKLTTQFIVLETRKDGVKF 545
+ ++ A + +LK+ G+ T K + L+ +I +T + V+F
Sbjct: 455 MQQKYAEHTGIA---SLKIKHNNVLGYFIETTATHAAKMLNPPLSETYIHRQTTANQVRF 511
Query: 546 TNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADL 605
T +L +L + +K L + + + + A L+ELD+ + ADL
Sbjct: 512 TTVELSELETRILNAGNHALEIEKRLYSSLSGAVLEQAARLNIAARGLAELDLATALADL 571
Query: 606 ASSCPTPYTRPDINPPDVGDIILEGSRHPCVE----AQDWVNFIPNDCKLIRGK-SWFQI 660
A + + RP ++P +EG RHP VE Q F+ NDC L K + ++
Sbjct: 572 ARA--ENWCRPSVDPSRA--FAIEGGRHPVVEHALRRQGGDPFVANDCDLSADKGAAIRL 627
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
+TGPNM GKST++RQ + L+AQ+GS+VP D A I V +F+RVGA D RG STFM
Sbjct: 628 LTGPNMAGKSTYLRQNALITLLAQIGSYVPADSAHIGVVSQLFSRVGASDDLARGRSTFM 687
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780
EM+ETA+IL A D +L+I+DE+GRGT+TYDG +AWA EHL R LFATH+HE
Sbjct: 688 VEMVETAAILNQADDHALVILDEIGRGTATYDGLSIAWATLEHLHATNRCRALFATHYHE 747
Query: 781 LTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFAN 840
LTALA + GV N V+ + ++ L++V GA D+S+G+ VA+ A
Sbjct: 748 LTALA---------ATLDGVENLTVA--VKEWEGEVIFLHEVRKGAADRSYGVQVAQLAG 796
Query: 841 FPESVVTLAREKAAELE 857
P SVV AR +LE
Sbjct: 797 LPPSVVARARVVLDQLE 813
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 673 (242.0 bits), Expect = 9.3e-64, P = 9.3e-64
Identities = 193/724 (26%), Positives = 350/724 (48%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC 215
G+ +VD++ L DD + E+ L+ + KE + A ++ L+
Sbjct: 504 GVCFVDVSIGEFYLCTIQDDDNRMQFETLLLQMMPKEIVYEKGATSPKTISIMKRVLSTV 563
Query: 216 GVMLTERKKTEF-KTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYA-ELLSD 273
++ R E+ D ++ + +L G + E GALG +SY ++
Sbjct: 564 KPVMNARLSLEYWDPTDTMERITQLCGGKTPETLCQMKNEEYLMGALGGCISYLMDIKIG 623
Query: 274 ESNYGNYYIRKYS-LD--SYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGK 330
S ++++ LD + M LD + L + + TD + +LF LM+R CT GK
Sbjct: 624 NSVVEQARFKRFNPLDIGNSMILDGQCLVNLEIFNNSTDGSTEGTLFKLMDR-CTTAFGK 682
Query: 331 RLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAG 390
R+ W+ +PL + N I R ++ D Q + L ++ D+ER++ + + +
Sbjct: 683 RMFRQWICRPLANKNAIVDRQKAIEFLRDSPETLQKVTAILNKLPDLERMIARIRAQTSK 742
Query: 391 LQQIVKLYQ--SSI--RLPYIRSALQQYEGQF--SSLIKERY-----LDPLESLTDDDHL 439
+ ++ + +I +L + +Q E S L + +D E+ +++++
Sbjct: 743 ISDLISVLNHFDNIHSKLLELLDEAEQIESIHLRSCLFMDNQQDNDDIDEQENSNNNNNI 802
Query: 440 NKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPV 499
++ ++++ + I L E + I SL + A L+
Sbjct: 803 -RYSGYPNLKPYIERVRKS-FTIEQDRVVPSKGLFLEFDQCLGNIQSLEQSFAKHLE--E 858
Query: 500 DKA-LKLDKGTQFGHVFR-ITKKEEP-KIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQ 556
KA K +K ++ H+ + I + E P KKL F + + ++ + + K
Sbjct: 859 QKAHFKCNK-IEYKHMGKEIYQIEIPVAFTKKLPAGFSLKSSSSKVNRYHSPFVTKNLTS 917
Query: 557 YQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRP 616
+ + Y+ KE++ +++ + F+ T LS+LD LLS ++ RP
Sbjct: 918 LLEERDTYEVLSKEVLKKILSNFAIYFNHFQIAITKLSQLDCLLSLYKVSFQSSIQMCRP 977
Query: 617 -DINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKS--WFQIITGPNMGGKSTFI 673
++ G I ++ RHPC+ ++ +FIPND L + ++TGPNMGGKST +
Sbjct: 978 LFVSSDQRGFIDVKDMRHPCIYSKSGDDFIPNDISLNTENNPPSLMVLTGPNMGGKSTLL 1037
Query: 674 RQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733
RQ + ++MAQ+G +V +S+ D IF R+GA D L G STFM E+ ET+++LK A
Sbjct: 1038 RQSCILVIMAQMGCYVSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLKYA 1097
Query: 734 TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFN 793
T RSL+I+DELGRGTST+DG+ +A+++ +L ++++ +FATH+ L A E
Sbjct: 1098 TKRSLVILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSL-------AYEPT 1150
Query: 794 TKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKA 853
+ ++ A +++ H+D ++K+ LYK+ G C S+G+HVA A P ++T A EK+
Sbjct: 1151 VRDLISTA--YMTCHVDEEAKKVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEEKS 1208
Query: 854 AELE 857
++E
Sbjct: 1209 TQME 1212
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 617 (222.3 bits), Expect = 2.1e-61, Sum P(2) = 2.1e-61
Identities = 211/737 (28%), Positives = 346/737 (46%)
Query: 140 VIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEA 199
VIVA+ IG+ +DL + L++F D++ + V + L L E ++ A
Sbjct: 18 VIVAVVEGRGHARGEIGMASIDLRSPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTA 77
Query: 200 VKSSECKTLRDALTRC--GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIA 257
L +T V T ++ F ++ +++L V V
Sbjct: 78 CVVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCITEFSTVLMEVQSKYYC 137
Query: 258 PGALGALLSYAELLSDESNYG--NYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFS 315
A+ ALL Y E + + S Y + I + +DS++ + L +L + D N +
Sbjct: 138 LAAVAALLKYVEFIQN-SVYAPKSLKICFQGSEQTAMIDSSSAQNLELLINNQDCRNNHT 196
Query: 316 LFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRIS 375
LFG++N T T G G R L + +PL+D+ IN RLD VQ + D L L+ + R
Sbjct: 197 LFGVLNYTKTPG-GSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFL 255
Query: 376 DIERLMHNLEKRRAGLQQIVKLYQSSI-RLPYIRSALQQYEG------QFSSLIKERYLD 428
D E+L+ L + Q V +S I L Y++ L+ + +++ + Y
Sbjct: 256 DTEQLLSVLVQ--IPKQDTVNAAESKITNLIYLKHTLELVDPLKIALKNYNTPLLRAYCG 313
Query: 429 PLESLTDDDHLNKFIALVETSVD-----LDQLENGEYMISSSYDTGLSALKNEQESLERQ 483
LE L K ++ L+ Y + S+ + L + +
Sbjct: 314 SLEDKRFGIILEKIKTVINDDTRYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDD 373
Query: 484 IHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGV 543
I + Q A +LP+ + +G F I P +L ++FI + K
Sbjct: 374 IAGMISQLAEKYNLPLRTSFSSARG--FFIQMTIDCTALPN--NQLPSEFIKISKVKSSY 429
Query: 544 KFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFA 603
FT+ L K+ ++ Q+ L E + +V +++ L+ +S LD+LLSFA
Sbjct: 430 TFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFA 489
Query: 604 DLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITG 663
+ + Y RP+ D + ++ HP +E I N+ + G + F IITG
Sbjct: 490 HACTL--SDYVRPEFT--DT--LAIKQGWHPILEKISVEKPIANNTYITEGSN-FLIITG 542
Query: 664 PNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723
PNM GKST+++Q+ + +MAQ+GS+VP + +S + + IF R+ D STFM+EM
Sbjct: 543 PNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEM 602
Query: 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783
E A IL A ++SLI+IDELGRGTST +G G+ +A+CE+L+ ++A TLFATHF EL
Sbjct: 603 KEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLS-LKAFTLFATHFLEL-- 659
Query: 784 LAHENANEFNTKQMVGVANYHVSAHIDSTSR-KLTMLY--KVEPGACDQ-SFGIHVAEFA 839
H A N + M ++ V H+ TSR K +LY K+ G ++ ++G+ AE +
Sbjct: 660 -CHIEALYPNVENM----HFEVQ-HVKDTSRNKEAILYTYKLCKGLTEEKNYGLKAAEVS 713
Query: 840 NFPESVVTLAREKAAEL 856
+ P S+V A+E A++
Sbjct: 714 SLPPSIVLDAKEITAQI 730
Score = 38 (18.4 bits), Expect = 2.1e-61, Sum P(2) = 2.1e-61
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 852 KAAELEDFTPSAVISDDAK 870
KAAE+ PS V+ DAK
Sbjct: 708 KAAEVSSLPPSIVL--DAK 724
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 647 (232.8 bits), Expect = 1.1e-60, P = 1.1e-60
Identities = 207/734 (28%), Positives = 326/734 (44%)
Query: 142 VALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVK 201
VA+ EN G+ +VD L EF+DD T E+ + +E LL V
Sbjct: 424 VAIKEAIIENLPAFGIAFVDTATGQFFLTEFVDDVDMTKFETFVAQTRPQELLLEKSTVS 483
Query: 202 SSECKTLRDALTRCGVMLTERKKTEFKTRDL-VQDLDRL----------VRGSVEPVRDL 250
+ L++ + + EF D+ V++LD + E +R
Sbjct: 484 QKALRILKNNTGPTTIWNYLKPGKEFWEADITVRELDASEYFVSQDNDNIHAWPEALRQ- 542
Query: 251 VSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYS-LDSYMRLDSAAMRALNVLESKTD 309
E+ A GAL+ Y LL E + I +S D + S + ++ +
Sbjct: 543 ARDKELVMSAFGALVQYLRLLKLERDL--ITIGNFSWYDPIKKASSLVLDGQTLINMEIF 600
Query: 310 ANK-NFSLFGLMNRT---CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQ 365
AN + + G + + C GKR+ W+ PL+D INARLD V A D+++R
Sbjct: 601 ANSFDGGVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRD 660
Query: 366 DLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKER 425
L ++ D+ERL+ + Q V++ + ++ Y S L+ G +I +
Sbjct: 661 QFASQLTKMPDLERLISRIHAANCRAQDFVRVLEGFEQIEYTMSLLKD-SGSGEGVIGQL 719
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLDQL-ENGEYMISSSYDTGLSALKNEQESLERQI 484
++S+ D L + + +T+ D +Q E+G + + + + L + +
Sbjct: 720 ----IKSMPD---LTELLEYWKTAFDHNQAKESGILVPKPGVEEDFDSSQETIRQLHQDL 772
Query: 485 HSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVK 544
L K+T +L D G + I + E P K + + + K +
Sbjct: 773 DDLLKRTRRELGSTA--ICYRDNGKE------IYQMEVPIKVKNIPRNWDQMSATKQVKR 824
Query: 545 FTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFAD 604
+ +L+ + Q+ E + KE+ R + S ++S+LD L+S A
Sbjct: 825 YYFPELRTTIRKLQEAQETHSQIVKEVSKRFYARFDEHYSTWLSAVRVVSQLDCLISLAK 884
Query: 605 LASSCPTPYTRPDINPPDVGDIILEGSRHPC-VEAQDWVNFIPNDCKLIRGKSWFQIITG 663
+SS P RP + + E RHPC + + D +FIPND +L ++TG
Sbjct: 885 ASSSLGEPSCRPTFVEDERSVLEFEELRHPCLISSVD--DFIPNDIQLGGSGPNIDLLTG 942
Query: 664 PNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723
N GKST +R V ++MAQVG ++PC A ++ D I +R+GA D STF E+
Sbjct: 943 ANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVEL 1002
Query: 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783
ET IL AT RSL+I+DELGRGTS+YDG +A A+ H+ I A FATH+H L A
Sbjct: 1003 SETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAA 1062
Query: 784 LAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPE 843
EN E K+M H+D R++T LYK+E G + SFG+H A P
Sbjct: 1063 -EFENHPEIKPKRM--------KIHVDENERRVTFLYKLEDGVAEGSFGMHCAAMCGIPN 1113
Query: 844 SVVTLAREKAAELE 857
V+ A A + E
Sbjct: 1114 KVIERAEVAAKQWE 1127
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 647 (232.8 bits), Expect = 1.1e-60, P = 1.1e-60
Identities = 207/734 (28%), Positives = 326/734 (44%)
Query: 142 VALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVK 201
VA+ EN G+ +VD L EF+DD T E+ + +E LL V
Sbjct: 424 VAIKEAIIENLPAFGIAFVDTATGQFFLTEFVDDVDMTKFETFVAQTRPQELLLEKSTVS 483
Query: 202 SSECKTLRDALTRCGVMLTERKKTEFKTRDL-VQDLDRL----------VRGSVEPVRDL 250
+ L++ + + EF D+ V++LD + E +R
Sbjct: 484 QKALRILKNNTGPTTIWNYLKPGKEFWEADITVRELDASEYFVSQDNDNIHAWPEALRQ- 542
Query: 251 VSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYS-LDSYMRLDSAAMRALNVLESKTD 309
E+ A GAL+ Y LL E + I +S D + S + ++ +
Sbjct: 543 ARDKELVMSAFGALVQYLRLLKLERDL--ITIGNFSWYDPIKKASSLVLDGQTLINMEIF 600
Query: 310 ANK-NFSLFGLMNRT---CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQ 365
AN + + G + + C GKR+ W+ PL+D INARLD V A D+++R
Sbjct: 601 ANSFDGGVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRD 660
Query: 366 DLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKER 425
L ++ D+ERL+ + Q V++ + ++ Y S L+ G +I +
Sbjct: 661 QFASQLTKMPDLERLISRIHAANCRAQDFVRVLEGFEQIEYTMSLLKD-SGSGEGVIGQL 719
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLDQL-ENGEYMISSSYDTGLSALKNEQESLERQI 484
++S+ D L + + +T+ D +Q E+G + + + + L + +
Sbjct: 720 ----IKSMPD---LTELLEYWKTAFDHNQAKESGILVPKPGVEEDFDSSQETIRQLHQDL 772
Query: 485 HSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVK 544
L K+T +L D G + I + E P K + + + K +
Sbjct: 773 DDLLKRTRRELGSTA--ICYRDNGKE------IYQMEVPIKVKNIPRNWDQMSATKQVKR 824
Query: 545 FTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFAD 604
+ +L+ + Q+ E + KE+ R + S ++S+LD L+S A
Sbjct: 825 YYFPELRTTIRKLQEAQETHSQIVKEVSKRFYARFDEHYSTWLSAVRVVSQLDCLISLAK 884
Query: 605 LASSCPTPYTRPDINPPDVGDIILEGSRHPC-VEAQDWVNFIPNDCKLIRGKSWFQIITG 663
+SS P RP + + E RHPC + + D +FIPND +L ++TG
Sbjct: 885 ASSSLGEPSCRPTFVEDERSVLEFEELRHPCLISSVD--DFIPNDIQLGGSGPNIDLLTG 942
Query: 664 PNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723
N GKST +R V ++MAQVG ++PC A ++ D I +R+GA D STF E+
Sbjct: 943 ANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVEL 1002
Query: 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783
ET IL AT RSL+I+DELGRGTS+YDG +A A+ H+ I A FATH+H L A
Sbjct: 1003 SETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAA 1062
Query: 784 LAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPE 843
EN E K+M H+D R++T LYK+E G + SFG+H A P
Sbjct: 1063 -EFENHPEIKPKRM--------KIHVDENERRVTFLYKLEDGVAEGSFGMHCAAMCGIPN 1113
Query: 844 SVVTLAREKAAELE 857
V+ A A + E
Sbjct: 1114 KVIERAEVAAKQWE 1127
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 492 (178.3 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 118/308 (38%), Positives = 178/308 (57%)
Query: 556 QYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTR 615
Q V ++ N LV+ ++ A +S + +L+T +DVL SFA +A S R
Sbjct: 864 QDHSVKDDDANTLAMLVDLLVGKASEWSLVINALST----IDVLRSFAAMALSSFGTTCR 919
Query: 616 PDINPPDVGDII-LEGSRHPCVEAQDWVNFIPNDCKL---IRGKSWFQII-TGPNMGGKS 670
P+I ++ ++G HP A+ +PND L + G++ F ++ TGPNMGGKS
Sbjct: 920 PNILLKGKAPVLQMKGLWHPYAFAESVNGLVPNDLSLGQNLSGQNRFALLLTGPNMGGKS 979
Query: 671 TFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 730
T +R + I++AQ+G +VPC +++ D IF R+GA D + G STF+ E ETASIL
Sbjct: 980 TIMRATCLAIVLAQLGCYVPCQSCELTLADAIFTRIGAMDRIMSGESTFLVECTETASIL 1039
Query: 731 KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA--LAHEN 788
+ AT+ SL+++DELGRGTST+DG+ +A+A+ HLVE +R LFATH+H LT +H +
Sbjct: 1040 ENATEDSLVLLDELGRGTSTFDGYAIAYAVFRHLVEAVRCRLLFATHYHPLTKEFASHPH 1099
Query: 789 ANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTL 848
+ M+ N D ++LT LY++ GAC +S+G+ VA A P S+V
Sbjct: 1100 VTLQHMACMLKPRNGG-----DGGEKELTFLYRLTSGACPESYGLQVATMAGLPRSIVER 1154
Query: 849 AREKAAEL 856
A A E+
Sbjct: 1155 A-SAAGEM 1161
Score = 215 (80.7 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 115/467 (24%), Positives = 196/467 (41%)
Query: 66 RQLGTGSDALSSVSVSKNMFE--TIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLG 123
RQ+G + V+V K + + R +E D S +LV TP +G
Sbjct: 457 RQVGISESGID-VAVEKLLARGYKVGRIEQMESADQAKSRGSNSVILRKLVHVSTPSTVG 515
Query: 124 SYEDVLFANNEMQDTPVIVALFP-NFRENGCTI-GLGYVDLTKRVLGLAEFLDDSHFTNV 181
+N D +++L NG + G ++D + + DD F +
Sbjct: 516 D-------SNIGADAVHLLSLKEITLASNGSRVYGFAFLDYAALKIWVGSVHDDDTFAAL 568
Query: 182 ESALVALGCKECLLPTEAVKSSECKTLRDALTRCG---VMLTERKKTEFKTRDLVQDL-- 236
+ LV + KE + T + S E L G + LT F +Q L
Sbjct: 569 GALLVQVSPKEIIYETSGL-SKETHRLIKKYASAGSVKMQLTPLYGLYFSDVSEIQTLID 627
Query: 237 DR-LVRGSVEP-VRDLVSGF--EIAPGALGALLSYAELLSDESNYGNYYIRKYSL-DSYM 291
R + S + L S + ALG L+S+ L E N + Y + + +
Sbjct: 628 SRGYFKASTSSWLSALNSSVNKDAVICALGGLVSHLTRLMLEDALKNGEVLAYHVYRTCL 687
Query: 292 RLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARL 351
R+D + L + + D + +L+ +N C GKRLL W+ PL D++ IN RL
Sbjct: 688 RMDGQTLVNLEIFSNNFDGGSSGTLYKHLNH-CITPCGKRLLRRWICHPLKDIDAINERL 746
Query: 352 DIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYI-RSA 410
DIV+ F+ + L +HL+++ D+ERL+ + K GL S++ LP++
Sbjct: 747 DIVEGFIQNCGLGSVTLEHLRKVPDLERLLGRV-KSTVGLS-------SAVLLPFVGEKI 798
Query: 411 LQQYEGQFSSLIKE-RY-LDPLESLTDDDHLNKFIALVETSVDLDQLEN-GEYMISSSYD 467
L++ F L+K R +D L+ L DH I+ + +VD+ L + GE + ++
Sbjct: 799 LKRRIKTFGMLVKGLRVGIDLLDILQRQDH---GISALSKAVDIPTLSSLGELI--HHFE 853
Query: 468 TGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHV 514
+ + + Q HS+ A+ L + VD L + K +++ V
Sbjct: 854 EAI-----DDDFPRYQDHSVKDDDANTLAMLVD--LLVGKASEWSLV 893
Score = 37 (18.1 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 457 NGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKL 505
NGEY+ ++ L AL + R+ S K ++ DLP KA KL
Sbjct: 220 NGEYVRGAT----LFALDSNYTP-RRE--SSEKLSSGPSDLPYIKATKL 261
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 455 (165.2 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 94/237 (39%), Positives = 144/237 (60%)
Query: 626 IILEGSRHPCVEAQDWVNFIPNDCKL--IRGKSWFQIITGPNMGGKSTFIRQVGVNILMA 683
+ILE + HP V A NFIPN+ + + K ++TGPNMGGKST +RQ +++++A
Sbjct: 976 LILENNIHPVV-ATLMPNFIPNNIYMGCDKEKETTLLLTGPNMGGKSTLLRQTAISVILA 1034
Query: 684 QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDE 743
Q+G+FVP +++ D IF R+G+ D G STF+ E+ + +++LK +T SL I+DE
Sbjct: 1035 QIGAFVPSTYCELTIVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLKQSTKYSLAILDE 1094
Query: 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY 803
LGRGTS++DG +A + E + + I+ +F+TH+H L N N ++NY
Sbjct: 1095 LGRGTSSFDGTAIALSTLEQISDVIKCRCIFSTHYHLLVEEVKHNTN---------ISNY 1145
Query: 804 HVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860
H+S ID K+ LYK G C +SFGIH+A+ A P+ ++ LA EK+ E+ T
Sbjct: 1146 HMSLSIDDDQEKIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIELAHEKSLLFENVT 1202
Score = 245 (91.3 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 93/378 (24%), Positives = 180/378 (47%)
Query: 260 ALGALLSYAE-LLSDESNYGNYYIRKYSL---DSYMRLDSAAMRALNVLESKTDANKNFS 315
A G + Y LL D+ I Y L D+YM LD+ A++ L +LE+++ KN S
Sbjct: 558 AFGGFIVYLRSLLLDKKILKFCKIEFYDLFKKDNYMVLDATALKHLEILETQSGETKN-S 616
Query: 316 LFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRIS 375
L+ +N+TCT G R + W+ PLL+ ++IN RLD+V+ + + +R LK++
Sbjct: 617 LYDYVNKTCT-NFGARNMRRWVCSPLLNCDKINQRLDVVEFLRKNDHILSLIRLKLKKLP 675
Query: 376 DIERLMHNLEKRRAGLQQIVKLYQSSI--RLPYIRSALQQYEGQFSSLIKERYLDPLESL 433
DIERL++ + + + ++ + + + +L + L ++ + LI+ +D E L
Sbjct: 676 DIERLLNKICIQASQSERGAVFFDNIVNTKLKEFVTFLNAFKEIDNMLIEINSIDSEEDL 735
Query: 434 TDD---DHLNKFIALVETSV-----DLDQLENGEYMISSSYDTGLSALKNEQ---ESLER 482
+ N + + + ++ ++D++ N E++ +D G K ++++
Sbjct: 736 IPTRLFEITNTYNKISKNNIKGNYPEIDKITN-EFLEKIYFD-GEKEYKPADGCDDAIDA 793
Query: 483 QIHSLHKQTASDLD-LPVD--KALKLDKGTQFGHVFRITKKEEP-KIRKKLTTQFIVLET 538
I+ K +L+ + VD K LK+ ++ H + E P + K + +
Sbjct: 794 -INKKEKDIEKELNNILVDIKKILKIPN-LKYVHAKYKYEIECPDNVPKSFLKEVEITSV 851
Query: 539 RKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDV 598
+K V+ N ++K L + + + +E K+ ++ E + S ++SELD
Sbjct: 852 KKGFVRIQNEEIKNLVEMLEDIEQEKKDAIYPFFQKIFHLFYEHYEKYISACRLISELDC 911
Query: 599 LLSFADLASSCPTPYTRP 616
L +FA +A + P TRP
Sbjct: 912 LQAFAYVALNTSFPLTRP 929
Score = 51 (23.0 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 106 GSGSNWRLVKSGTPGNLG-SYEDVLFANNEMQDTPVIVALFPNFRENGCTIG 156
G N + K G G+ S E F E PV+ L PNF N +G
Sbjct: 950 GDDLNCEIEKDGKMGSENASKEKKPFLILENNIHPVVATLMPNFIPNNIYMG 1001
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 633 (227.9 bits), Expect = 3.6e-59, P = 3.6e-59
Identities = 185/595 (31%), Positives = 309/595 (51%)
Query: 281 YIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQP 340
Y + +S S+M L+ + +L + +++TD + SLF ++RT T G+R+L W+ +P
Sbjct: 504 YFQHFSSRSHMLLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQTR-FGQRMLRKWVGRP 562
Query: 341 LLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDI-ERLMHNLEKRRAGLQQIVKLYQ 399
LLD ++ R++ V+ D R + ++RI + ++ H+LEK GL +++Y
Sbjct: 563 LLDRRQLEDRVNAVEELKD---FRNVVM--VERIKGLLGKIKHDLEK---GL---IRIYY 611
Query: 400 SSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSV-----DLDQ 454
P + + LQ + +I + + D +ES D + I+ S+ D+
Sbjct: 612 GKCSRPELLTILQTMQ-----MIAQEFAD-IESPADTGFSSPAISQAIMSLPTILKDVVF 665
Query: 455 LENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTAS-DLD--LPV-DKAL--KLDKG 508
N M ++ D + E+E+ E H L +L+ PV +AL K+
Sbjct: 666 FLNKINMHAARNDDKYEFFREEEETEEISEHKLGIGAVEHELEEHRPVAGEALGKKMVTY 725
Query: 509 TQFGHVFRITKKEE--PKIRKKLTTQFIVLETRKDGVKFTNTKLKKL---GDQYQKVLEE 563
+ + + E P I K++ ++ + K +F ++ K+ DQ+++ L
Sbjct: 726 VSVAGIDYLVEVENNSPAI-KRVPASWMKISGTKKVSRFHTPEVVKMIRQRDQHREALAA 784
Query: 564 YKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDV 623
C K + + A + + + L+ LD L+S A LAS P Y +P+
Sbjct: 785 A--CDKAFLALQAEIATNYQAL-RDCVQSLATLDCLVSLATLASQ-PG-YVKPEYTEETC 839
Query: 624 GDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA 683
I +E RHP VE +++PND L K+ ++TGPNMGGKS+++RQV + +M
Sbjct: 840 --IHVEQGRHPMVEQLLLDSYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMG 897
Query: 684 QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDE 743
Q+GS+VP A + + D +F R+GA D L G STFM E+ ETA ILK AT RSL+I+DE
Sbjct: 898 QIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDE 957
Query: 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY 803
LGRGTST+DG +A A+ +++V IR+ TLF TH+ L+A+ H F ++ V +
Sbjct: 958 LGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHS----FPDGELRNV-HM 1012
Query: 804 HVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858
S +T LY++ G +S+G++VA AN P ++ +A++K+AELE+
Sbjct: 1013 RFSESGTGADEDITFLYEIGEGVAHRSYGLNVARLANLPAPLLEMAKQKSAELEE 1067
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 633 (227.9 bits), Expect = 3.6e-59, P = 3.6e-59
Identities = 185/595 (31%), Positives = 309/595 (51%)
Query: 281 YIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQP 340
Y + +S S+M L+ + +L + +++TD + SLF ++RT T G+R+L W+ +P
Sbjct: 504 YFQHFSSRSHMLLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQTR-FGQRMLRKWVGRP 562
Query: 341 LLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDI-ERLMHNLEKRRAGLQQIVKLYQ 399
LLD ++ R++ V+ D R + ++RI + ++ H+LEK GL +++Y
Sbjct: 563 LLDRRQLEDRVNAVEELKD---FRNVVM--VERIKGLLGKIKHDLEK---GL---IRIYY 611
Query: 400 SSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSV-----DLDQ 454
P + + LQ + +I + + D +ES D + I+ S+ D+
Sbjct: 612 GKCSRPELLTILQTMQ-----MIAQEFAD-IESPADTGFSSPAISQAIMSLPTILKDVVF 665
Query: 455 LENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTAS-DLD--LPV-DKAL--KLDKG 508
N M ++ D + E+E+ E H L +L+ PV +AL K+
Sbjct: 666 FLNKINMHAARNDDKYEFFREEEETEEISEHKLGIGAVEHELEEHRPVAGEALGKKMVTY 725
Query: 509 TQFGHVFRITKKEE--PKIRKKLTTQFIVLETRKDGVKFTNTKLKKL---GDQYQKVLEE 563
+ + + E P I K++ ++ + K +F ++ K+ DQ+++ L
Sbjct: 726 VSVAGIDYLVEVENNSPAI-KRVPASWMKISGTKKVSRFHTPEVVKMIRQRDQHREALAA 784
Query: 564 YKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDV 623
C K + + A + + + L+ LD L+S A LAS P Y +P+
Sbjct: 785 A--CDKAFLALQAEIATNYQAL-RDCVQSLATLDCLVSLATLASQ-PG-YVKPEYTEETC 839
Query: 624 GDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA 683
I +E RHP VE +++PND L K+ ++TGPNMGGKS+++RQV + +M
Sbjct: 840 --IHVEQGRHPMVEQLLLDSYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMG 897
Query: 684 QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDE 743
Q+GS+VP A + + D +F R+GA D L G STFM E+ ETA ILK AT RSL+I+DE
Sbjct: 898 QIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDE 957
Query: 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY 803
LGRGTST+DG +A A+ +++V IR+ TLF TH+ L+A+ H F ++ V +
Sbjct: 958 LGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHS----FPDGELRNV-HM 1012
Query: 804 HVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858
S +T LY++ G +S+G++VA AN P ++ +A++K+AELE+
Sbjct: 1013 RFSESGTGADEDITFLYEIGEGVAHRSYGLNVARLANLPAPLLEMAKQKSAELEE 1067
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 615 (221.5 bits), Expect = 5.0e-59, Sum P(2) = 5.0e-59
Identities = 198/716 (27%), Positives = 337/716 (47%)
Query: 155 IGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR 214
+G+ +DL + L++F D++ + V + L L E ++P + ++ L +T
Sbjct: 84 VGMASIDLKNPEVILSQFADNTTYAKVITKLKILTPLEIIMPNTSCEAGNTTKLFALITE 143
Query: 215 C--GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLS 272
V T ++ F ++ +++L V + A ALL Y E +
Sbjct: 144 HFKNVTFTTVQRKYFNETKGLEYIEQLCASEFSTVFMEIQSKYYCLAAAAALLKYVEFIQ 203
Query: 273 DESNYGNYYIRKY--SLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGK 330
+ S Y ++ + + +DS++ + L ++ + D+ +LFG++N T T G G
Sbjct: 204 N-SIYAPKSLKVHFQGSEKTAMIDSSSAQNLELVTNNRDSRNGHTLFGVLNYTRTPG-GS 261
Query: 331 RLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAG 390
R L + +PL+D I RLD VQ F+ D L L+ + + D E+L+ L +
Sbjct: 262 RRLRSNILEPLVDAETIKTRLDCVQEFLQDEELFFGLQAVISKFLDTEQLLSILVQ--IP 319
Query: 391 LQQIVKLYQSSI-RLPYIRSALQQYEGQFSSL------IKERYLDPLESLTDDDHLNKFI 443
Q VK +S I + Y++ L+ E ++L + Y + LE L K
Sbjct: 320 KQDTVKTAESKISNIIYLKHTLELVEPLKAALRRCNTSLLRAYYNALEDRRFGIILEKIT 379
Query: 444 ALVETSVD-----LDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLP 498
A++ L Y + + + L + + I + Q A +LP
Sbjct: 380 AVINDDTRYAKGCLSMRTQKCYAVKPNINEFLDIARRTYTEIVDDIAGMITQLAEKYNLP 439
Query: 499 VDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQ 558
LK + G ++ KL ++F + ++ FT+ L K+ ++ Q
Sbjct: 440 ----LKTSFSSVRGFFIQMNADCSALPNGKLPSEFTKVTKTRNTYSFTSADLIKMNERCQ 495
Query: 559 KVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDI 618
+ L E + +V +++ L+ ++S LD+LLSFA + + Y RP+
Sbjct: 496 ESLREIYHMTYLIVCKLLNEIYEHIHCLYKLSDIVSMLDMLLSFAHACTI--SDYVRPEF 553
Query: 619 NPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678
D + ++ HP +E + N+ L G + F IITGPNM GKST+I+Q+ +
Sbjct: 554 T--DT--LAIKQGWHPILEKIAMEKPVSNNAYLTEGSN-FLIITGPNMSGKSTYIKQIAL 608
Query: 679 NILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSL 738
+MAQ+GS+VP + S + + IF R+G D STFM+EM E I++ A D+SL
Sbjct: 609 CQIMAQIGSYVPAEYCSFRIAEQIFTRIGMDDDIETNASTFMKEMKEITYIIQNANDKSL 668
Query: 739 IIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMV 798
IIIDELGRGTS +G G+ +A CE+L+ ++A TLFATHF EL H +A N
Sbjct: 669 IIIDELGRGTSAEEGIGICYAACEYLLN-LKAFTLFATHFLEL---CHMDALYPN----- 719
Query: 799 GVANYHVSA-HIDSTS--RKLTMLYKVEPGACDQ-SFGIHVAEFANFPESVVTLAR 850
V NYH H+ S++ K+T Y + G ++ ++G+ AE ++ P S++ A+
Sbjct: 720 -VENYHFEVQHVRSSAGKEKITYTYTLSKGYTEEKNYGLKAAEVSSLPPSIILDAK 774
Score = 38 (18.4 bits), Expect = 5.0e-59, Sum P(2) = 5.0e-59
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 852 KAAELEDFTPSAVISDDAKIEVGSKRKRI 880
KAAE+ PS ++ DAK K+I
Sbjct: 758 KAAEVSSLPPSIIL--DAKAITNHIAKQI 784
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 627 (225.8 bits), Expect = 7.6e-59, P = 7.6e-59
Identities = 207/722 (28%), Positives = 338/722 (46%)
Query: 155 IGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR 214
IG+ +DL + L++F D++ + V + L L E ++ A L +T
Sbjct: 193 IGMASIDLKSPQIMLSQFADNTTYAKVITKLQVLSPLEIIMSNTACVVGNSTKLFTLITE 252
Query: 215 C--GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLS 272
V T ++ F ++ +++L V V A ALL Y E +
Sbjct: 253 NFKNVNFTTVQRKYFNETKGLEYIEQLCIAEFSSVLMEVQSRYYCLAAAAALLKYVEFIQ 312
Query: 273 DESNYGNYYIRKYSLDSYMR--LDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGK 330
+ S Y ++ Y S +DS++ + L +L + D N +LFG++N T TAG G
Sbjct: 313 N-SVYAPKSLKIYFQGSEQTAMIDSSSAQNLELLVNNQDYRSNHTLFGVLNYTKTAG-GS 370
Query: 331 RLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAG 390
R L + +PL+DV I+ RLD VQ + D L L+ + R D E+L+ L +
Sbjct: 371 RRLRSNILEPLVDVETISMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVLVQ--IP 428
Query: 391 LQQIVKLYQSSI-RLPYIRSALQQYEG------QFSSLIKERYLDPLESLTDDDHLNKFI 443
Q V +S I L Y++ L+ E S+ + Y LE L+K
Sbjct: 429 KQDTVNAAESKITNLIYLKHTLELVEPLKVTLKNCSTPLLRAYYGSLEDHRFGLILDKIK 488
Query: 444 ALVETSVD-----LDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLP 498
++ L+ Y + S+ L + + I + Q A LP
Sbjct: 489 TVINDDARYMKGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMIAQLAEKYSLP 548
Query: 499 VDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQ 558
L+ + G ++T +L ++FI + K+ FT+ L K+ ++ Q
Sbjct: 549 ----LRTSFSSSRGFFIQMTTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQ 604
Query: 559 KVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDI 618
+ L E + +V +++ L+ +S LD+LLSFA + + Y RP+
Sbjct: 605 ESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTL--SDYVRPEF 662
Query: 619 NPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678
D + ++ HP +E + N+ + G + IITGPNM GKST+++Q+ +
Sbjct: 663 T--DT--LAIKQGWHPILEKISAEKPVANNTYITEGSNVL-IITGPNMSGKSTYLKQIAL 717
Query: 679 NILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSL 738
+MAQ+GS+VP + AS + IF R+ D STFM+EM E A IL A D+SL
Sbjct: 718 CQIMAQIGSYVPAEYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSL 777
Query: 739 IIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMV 798
I+IDELGRGT+T +G G+++A+CEHL+ I+A TLF THF EL H +A N + M
Sbjct: 778 ILIDELGRGTNTEEGIGISYAVCEHLLS-IKAFTLFTTHFLEL---CHLDALYLNVENM- 832
Query: 799 GVANYHVSAHIDSTSRK---LTMLYKVEPGACDQ-SFGIHVAEFANFPESVVTLAREKAA 854
++ V H+ +TSR + YK+ G ++ ++G+ AE ++ P S+V AR+
Sbjct: 833 ---HFEVQ-HVKNTSRNKDAILYTYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARDITT 888
Query: 855 EL 856
++
Sbjct: 889 QI 890
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 627 (225.8 bits), Expect = 2.2e-58, P = 2.2e-58
Identities = 214/756 (28%), Positives = 352/756 (46%)
Query: 143 ALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKS 202
A+ P ++ G G ++D + L EF DDS T +++ + + KE ++ +
Sbjct: 384 AVPPEAQQQGRLFGTAFIDTATGRICLLEFEDDSECTQLDTLMAQVRPKEVVMEKRNLSV 443
Query: 203 SECKTLR-DALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRD----LVS----- 252
K ++ ++ C + R EF D + D + G D ++
Sbjct: 444 IAHKIVKFNSQPDC--IFNYRTSAEFY--DYARTFDEVSNGGYFAGMDSWPAILKQYYDQ 499
Query: 253 GFEIAPGALGALLSYAELLS-DESNYGNYYIRKYS---LDSYMRLDSAAMRALNVLESKT 308
G ++ A G LLSY + L D+S + +Y+ + + LD ++ L + +
Sbjct: 500 GKKVGFSAFGGLLSYLQWLKLDKSLLSMGMVEEYNPLKAQTSLVLDGITLQNLEIFANSF 559
Query: 309 DANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLR 368
D +LF L+NR T MGKR + W+ PLL I RLD V +++ +R L
Sbjct: 560 DGTDKGTLFKLVNRAITP-MGKRQMRTWVMHPLLRKEHIEERLDSVDQLLNEMPIRDLLE 618
Query: 369 QHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLD 428
L + D+ERL+ + ++ K+ + + S+L +YE SL R+L
Sbjct: 619 SSLTGLPDLERLLARVHSGNLPIKDFDKVICGFENIVRLISSLNEYELS-GSL--SRFLH 675
Query: 429 PLESLTDDDHLNKFIALVETSVDLDQ---LENGEYMISSSYDTGLSALKNEQESLERQIH 485
+ S D + + L + ++ + + + N + +D LS ++ +E L+ +
Sbjct: 676 DIPSTLKSD-VESWTTLYDRNMAVSEGKVVPNAG--VEPDFDVSLSKMRALEEELDAVL- 731
Query: 486 SLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEP-KIRKKLTTQFIVLETRKDGVK 544
S +K++ K D G + ++ I E P I K + + + L K +
Sbjct: 732 SEYKRS-----FKCSKIQYKDSGKE---LYTI---ELPISIAKSVPSNWTQLGANKSTKR 780
Query: 545 FTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTA-VTFSEIFKSLATMLSELDVLLSFA 603
+ + K++KL + E +K ++ L R+ Q FS + +S +D +LS A
Sbjct: 781 YYSPKVQKLARSMAEARELHKILEEGLKGRLYQKFDQNFSTTWFPTIKAISNIDCILSLA 840
Query: 604 DLASSCPTPYTRP----DINPPDV----GDIILEGSRHPCVEA--QDWVNFIPNDCKLIR 653
+ S P RP +I+P G + + RHPC A FIPND L
Sbjct: 841 RTSESLGFPACRPNFKDEIDPTTGHKLNGYLSFKELRHPCYNAGVNGATEFIPNDVHL-- 898
Query: 654 GKSWFQI--ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDC 711
GKS QI +TG N GKST +R + ++MAQ+G +VPC+ A +S D I R+GA D
Sbjct: 899 GKSTAQIALLTGANAAGKSTILRMTCIAVIMAQLGCYVPCEDAELSPMDRIMTRLGANDN 958
Query: 712 QLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771
++G STF E+ ET IL AT+R+LI++DELGRG S+ DGF +A + H+ +++
Sbjct: 959 IMQGKSTFFVELSETRKILDMATNRTLIVLDELGRGGSSSDGFAIAEGVLHHISTHVQSL 1018
Query: 772 TLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSF 831
FATH+ L F MV ++ +D S+K+T LYK+ G + SF
Sbjct: 1019 GFFATHYGTL-------GQSFTHHPMV--KPLQMAILVDEGSKKVTFLYKLIEGQSEGSF 1069
Query: 832 GIHVAEFANFPESVVTLAREKAAELEDFTPSAVISD 867
G+HVA P SVV A E+AAE + T S ++ +
Sbjct: 1070 GMHVAAMCGIPRSVVENA-ERAAESFEHT-SRILKE 1103
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 622 (224.0 bits), Expect = 2.9e-58, P = 2.9e-58
Identities = 220/779 (28%), Positives = 352/779 (45%)
Query: 99 HTLELYEGSGSNWRLVKSGTPG-NLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGL 157
HT +G+ R K TP L + + A+ VIVA+ IG+
Sbjct: 140 HTFRTPLSAGNPQRSYKGWTPQVGLSATSSAVSAHAPS----VIVAVVEGRGLARGEIGM 195
Query: 158 GYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC-- 215
+DL + L++F D++ + V + L L E ++ A L +T
Sbjct: 196 ASIDLKSPQIMLSQFADNTTYAKVITKLQVLSPLEIIMSNTACVVGNSTKLFTLITENFK 255
Query: 216 GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDES 275
V T ++ F ++ +++L V V A ALL Y E + + S
Sbjct: 256 NVNFTTVQRKYFNETKGLEYIEQLCIAEFSSVLMEVQSRYYCLAAAAALLKYVEFIQN-S 314
Query: 276 NYGNYYIRKYSLDSYMR--LDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLL 333
Y ++ Y S +DS++ + L +L + D N +LFG++N T TAG G R L
Sbjct: 315 VYAPKSLKIYFQGSEQTAMIDSSSAQNLELLVNNQDYRSNHTLFGVLNYTKTAG-GSRRL 373
Query: 334 HMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQ 393
+ +PL+DV I+ RLD VQ + D L L+ + R D E+L+ L + Q
Sbjct: 374 RSNILEPLVDVETISMRLDCVQELLQDEELFYGLQSVISRFLDTEQLLSVLVQ--IPKQD 431
Query: 394 IVKLYQSSI-RLPYIRSALQQYEG------QFSSLIKERYLDPLESLTDDDHLNKFIALV 446
V +S I L Y++ L+ + S+ + Y LE L K ++
Sbjct: 432 TVNAAESKITNLIYLKHTLELVDPLKVALKNCSTPLLRAYYGSLEDHRFGLILEKIKTVI 491
Query: 447 ETSVD-----LDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDK 501
L+ Y + S+ L + + I + Q A LP
Sbjct: 492 NDDARYMKGCLNMRTQKCYAVRSNISEFLDIARRTYTEIVDDIAGMISQLAEKYSLP--- 548
Query: 502 ALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVL 561
L+ + G ++T +L ++FI + K+ FT+ L K+ ++ Q+ L
Sbjct: 549 -LRTSFSSARGFFIQMTTDCAALSSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESL 607
Query: 562 EEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPP 621
E + +V +++ L+ +S LD+LLSFA + + Y RP+
Sbjct: 608 REIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTL--SDYVRPEFT-- 663
Query: 622 DVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL 681
D + ++ HP +E + N+ + G + IITGPNM GKSTF++Q+ + +
Sbjct: 664 DT--LAIKQGWHPILEKISAEKPVANNTYITEGSNVL-IITGPNMSGKSTFLKQIALCQI 720
Query: 682 MAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIII 741
MAQ+GSFVP AS + IF R+ D STFM+EM E A IL A D+SLI+I
Sbjct: 721 MAQIGSFVPAQYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILI 780
Query: 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVA 801
DELGRGT+T +G G+++A+CEHL+ +A TLF THF EL H + N + M
Sbjct: 781 DELGRGTNTEEGTGISYAVCEHLLST-KAFTLFTTHFLEL---CHIDTLYLNVENM---- 832
Query: 802 NYHVSAHIDSTSRK---LTMLYKVEPGACDQS-FGIHVAEFANFPESVVTLAREKAAEL 856
++ V H+ +TSR + YK+ G ++ +G+ AE ++ P S+V ARE ++
Sbjct: 833 HFEVQ-HVKNTSRNKDAILYTYKLSRGLTEEKHYGLKAAEASSLPPSIVLDAREITTQI 890
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 613 (220.8 bits), Expect = 3.4e-58, Sum P(2) = 3.4e-58
Identities = 214/763 (28%), Positives = 353/763 (46%)
Query: 115 KSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLD 174
KS TP +G Y + VIVA+ IG+ +DL + L++F D
Sbjct: 52 KSWTP-QMG-YSATSSSAVSAHSPSVIVAVVEGRGLARGEIGMASIDLKSPQIVLSQFAD 109
Query: 175 DSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC--GVMLTERKKTEFKTRDL 232
++ + V + L L E ++ A L +T V T ++ F
Sbjct: 110 NTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTIQRKYFNETKG 169
Query: 233 VQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYG--NYYIRKYSLDSY 290
++ +++L V V A+ ALL Y E + + S Y + I +
Sbjct: 170 LEYIEQLCIAEFNTVLMEVQSKYYCLAAVAALLKYVEFIQN-SVYAPKSLKICFQGSEQT 228
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
+DS++ + L +L + D+ N +LFG++N T T G G R L + +PL+DV IN R
Sbjct: 229 AMIDSSSAQNLELLINNQDSRNNHTLFGVLNYTKTPG-GSRRLRSNILEPLVDVETINMR 287
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSI-RLPYIRS 409
LD VQ + D L L+ + R D E+L+ L + Q V + +S I L ++
Sbjct: 288 LDCVQELLQDEELFFGLQSVIARFLDTEQLLSVLVQ--IPKQDTVNVAESKITNLICLKH 345
Query: 410 ALQQYEGQFSSL------IKERYLDPLESLTDDDHLNKFIALVETSVD-----LDQLENG 458
L+ + +L + Y LE L+K ++ L+
Sbjct: 346 TLELVDPLKITLKNCNTPLLRAYYGSLEDKRFGIILDKIKTVINDDARYMKGCLNMRTQK 405
Query: 459 EYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRIT 518
Y + S+ + L + + I + Q A LP L+ + G ++T
Sbjct: 406 CYAVRSNINEFLDIARRTYTEIVDDIAGMITQLAEKYSLP----LRTSFSSARGFFIQMT 461
Query: 519 KKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQT 578
+L ++FI + K+ FT+ L K+ ++ Q+ L E + +V +++
Sbjct: 462 TDCTVLPNDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSE 521
Query: 579 AVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEA 638
L+ +S LD+LLSFA + + Y RP+ D + ++ HP +E
Sbjct: 522 IYEHIHCLYKLSDTVSMLDMLLSFAHACTL--SDYVRPEFT--DT--LAIKQGWHPILER 575
Query: 639 QDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISV 698
+ N+ + G ++F IITGPNM GKST+++Q+ + +MAQ+GS+VP + +S +
Sbjct: 576 ISVEKPVANNTYITEGSNFF-IITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRI 634
Query: 699 RDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAW 758
+ IF R+ D STFM+EM E A IL A D+SLI+IDELGRGT+T +G G+ +
Sbjct: 635 AEQIFTRISTDDDIETNSSTFMKEMKEVAYILHNANDKSLILIDELGRGTNTEEGIGICY 694
Query: 759 AICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA-HIDSTSR-KL 816
A+CEHL+ ++A TLFATHF EL + N V N H H+ +TSR K
Sbjct: 695 AVCEHLLS-LKAFTLFATHFLELCQIDVLYPN---------VENMHFEVQHVKNTSRNKE 744
Query: 817 TMLY--KVEPGACDQ-SFGIHVAEFANFPESVVTLAREKAAEL 856
+LY K+ G ++ ++G+ AE ++ P S+V A++ ++
Sbjct: 745 AILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKDITTQI 787
Score = 38 (18.4 bits), Expect = 3.4e-58, Sum P(2) = 3.4e-58
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 852 KAAELEDFTPSAVISDDAK 870
KAAE+ PS V+ DAK
Sbjct: 765 KAAEVSSLPPSIVL--DAK 781
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 620 (223.3 bits), Expect = 7.0e-58, Sum P(2) = 7.0e-58
Identities = 217/762 (28%), Positives = 354/762 (46%)
Query: 115 KSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLD 174
KS TP +G Y + VIVA+ IG+ +DL + L++F D
Sbjct: 127 KSWTP-QMG-YSATSSSAVSTHSPSVIVAVVEGRGHARGEIGMASIDLRSPQIILSQFAD 184
Query: 175 DSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC--GVMLTERKKTEFKTRDL 232
++ + V + L L E ++ A L +T V T ++ F
Sbjct: 185 NTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTIQRKYFNETKG 244
Query: 233 VQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYG--NYYIRKYSLDSY 290
++ +++L V V A+ ALL Y E + + S Y + I +
Sbjct: 245 LEYIEQLCITEFSTVLMEVQSKYYCLAAVAALLKYVEFIQN-SVYAPKSLKICFQGSEQT 303
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
+DS++ + L +L + D N +LFG++N T T G G R L + +PL+D+ IN R
Sbjct: 304 AMIDSSSAQNLELLINNQDCRNNHTLFGVLNYTKTPG-GSRRLRSNILEPLVDIETINMR 362
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSI-RLPYIRS 409
LD VQ + D L L+ + R D E+L+ L + Q V +S I L Y++
Sbjct: 363 LDCVQELLQDEELFFGLQSVISRFLDTEQLLSVLVQ--IPKQDTVNAAESKITNLIYLKH 420
Query: 410 ALQQYEG------QFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD-----LDQLENG 458
L+ + +++ + Y LE L K ++ L+
Sbjct: 421 TLELVDPLKIALKNYNTPLLRAYCGSLEDKRFGIILEKIKTVINDDTRYMKGCLNMRTQK 480
Query: 459 EYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRIT 518
Y + S+ + L + + I + Q A +LP+ + +G F I
Sbjct: 481 CYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYNLPLRTSFSSARG--FFIQMTID 538
Query: 519 KKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQT 578
P +L ++FI + K FT+ L K+ ++ Q+ L E + +V +++
Sbjct: 539 CTALPN--NQLPSEFIKISKVKSSYTFTSADLIKMNERCQESLREIYHMTYMIVCKLLSE 596
Query: 579 AVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEA 638
L+ +S LD+LLSFA + + Y RP+ D + ++ HP +E
Sbjct: 597 IYEHIHCLYKLSDTVSMLDMLLSFAHACTL--SDYVRPEFT--DT--LAIKQGWHPILEK 650
Query: 639 QDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISV 698
I N+ + G + F IITGPNM GKST+++Q+ + +MAQ+GS+VP + +S +
Sbjct: 651 ISVEKPIANNTYITEGSN-FLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRI 709
Query: 699 RDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAW 758
+ IF R+ D STFM+EM E A IL A ++SLI+IDELGRGTST +G G+ +
Sbjct: 710 AEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICY 769
Query: 759 AICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSR-KLT 817
A+CE+L+ ++A TLFATHF EL H A N + M ++ V H+ TSR K
Sbjct: 770 AVCEYLLS-LKAFTLFATHFLEL---CHIEALYPNVENM----HFEVQ-HVKDTSRNKEA 820
Query: 818 MLY--KVEPGACDQ-SFGIHVAEFANFPESVVTLAREKAAEL 856
+LY K+ G ++ ++G+ AE ++ P S+V A+E A++
Sbjct: 821 ILYTYKLCKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITAQI 862
Score = 38 (18.4 bits), Expect = 7.0e-58, Sum P(2) = 7.0e-58
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 852 KAAELEDFTPSAVISDDAK 870
KAAE+ PS V+ DAK
Sbjct: 840 KAAEVSSLPPSIVL--DAK 856
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 601 (216.6 bits), Expect = 9.7e-58, Sum P(2) = 9.7e-58
Identities = 193/605 (31%), Positives = 311/605 (51%)
Query: 287 LDSY--MRLDSAAMRALNVLESKT-DANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLD 343
+DS+ M +D + M++L + +KT +K SL +++T T G RLL ++ P L+
Sbjct: 312 IDSHNSMFIDYSTMQSLEI--TKTYQGDKKGSLLESIDKTITP-QGGRLLFSRIQSPSLE 368
Query: 344 VNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAG---LQQIVKLYQS 400
+ EIN+RL+ ++ F ++ L ++R L SDIER + L+ ++G L I QS
Sbjct: 369 LKEINSRLNQLEFFYNNMELTNEVRSFLNAGSDIERCIQRLKINKSGPRDLHTIGSTLQS 428
Query: 401 SIRLPY-IRSAL------QQYEG--QFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
L ++S L +Q E Q I++ +L PL + HL+ AL+++
Sbjct: 429 IFHLKESLQSKLLTMKINEQTESINQLLLKIQQTHLTPLLN-----HLSA--ALIDSPPS 481
Query: 452 LDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQF 511
+ + G I Y L K + + I+ + + L +P LK++K +
Sbjct: 482 ISVNDGG--FIKEGYSKELDRYKLISRNSDALINEFRETYRNKLKIP---KLKVNKNSII 536
Query: 512 GHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKEL 571
G+ I+ + R K+ FI ++T ++F ++ L L D+ + + + +L
Sbjct: 537 GYYIEISSSD----RDKIPLNFIHIQTLLSVMRFKSSDLIILEDEINRAASKVLEYEIQL 592
Query: 572 VNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSC----PTPYTRPDINPPDV---- 623
++ +S K ++++++ LD+ S A ++ P + N ++
Sbjct: 593 YYVLVDLVCKYSNEIKQVSSVIANLDISTSLAKISKQRRYIKPILVNNNNNNNNNIVVDN 652
Query: 624 --GD---IILE--GSRHPCVEAQDWVNFIPNDCKLIRG----KSWFQIITGPNMGGKSTF 672
D +IL+ RHP VE FI ND +L +G W +ITGPNMGGKSTF
Sbjct: 653 DNNDNDRLILDIKDGRHPTVE-NSTTEFIGNDLQLNKGIDDANLW--LITGPNMGGKSTF 709
Query: 673 IRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732
+RQ + ILMAQ+GSFVP A I + D IF+RVG+ D STFM EM+ETASILK
Sbjct: 710 LRQNALIILMAQMGSFVPASYAKIGIVDAIFSRVGSSDDLSNDKSTFMVEMVETASILKK 769
Query: 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEF 792
AT+RS +I+DE+GRGTST DG +A ++ E+L + R TLFATH+HELT +N +E
Sbjct: 770 ATNRSFVIMDEVGRGTSTLDGISIAQSVVEYLNQVNRCRTLFATHYHELT----KNLDE- 824
Query: 793 NTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREK 852
T + Y ++ D ++ +K+ PG ++S+GI A+ A P SV+ ++
Sbjct: 825 -TPH---IKCYCLAIQEDED--EILFTHKIVPGMSNKSYGIFCAKMAGIPNSVLERSKSI 878
Query: 853 AAELE 857
ELE
Sbjct: 879 LFELE 883
Score = 57 (25.1 bits), Expect = 9.7e-58, Sum P(2) = 9.7e-58
Identities = 31/122 (25%), Positives = 52/122 (42%)
Query: 21 FLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSV 80
+ F K PN+ + FF D+Y E+A + T T+ +Q + + V
Sbjct: 4 YSGFKKKYPNE---ILFFRLGDFYEMFDEDAKIASNLLGITLTSRKQGKNRNREIPMCGV 60
Query: 81 SKNMFET-IARDLLL-------ERTDHTLELYEGSGS-NWRLVKSGTPGNLGSYEDVLFA 131
+ E IA+ + L ++ + + E EG N ++V+ TPG L YED
Sbjct: 61 PSHSAEIHIAKLVKLGKSVAICDQVEDSNEAKEGRRIINRQIVRIITPGTL--YEDRYLT 118
Query: 132 NN 133
+N
Sbjct: 119 SN 120
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 611 (220.1 bits), Expect = 1.3e-57, P = 1.3e-57
Identities = 165/503 (32%), Positives = 280/503 (55%)
Query: 365 QDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLP----YIRSALQQYEGQFSS 420
Q+L+++ + + I +++ + A L+++V S++ P Y++++L++ E +
Sbjct: 320 QELKENREALLKIRQILEGM----ADLERLVSKISSNMATPRELVYLKNSLKKVE-ELRL 374
Query: 421 LIKERYLDPL--ESLTDDDHLNKFIALVE-TSVDLDQLENGEY-MISSSYDTGLSALKNE 476
L+ E P+ E L + + K I +E T V+ L E +I + L L+
Sbjct: 375 LLLELKA-PIFKEILQNFEDTKKIINDIEKTLVEDPPLHVKEGGLIREGVNAYLDELRFI 433
Query: 477 QESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVL 536
+++ E + K+ + + ++LK+ G+ +TK P + K + + F
Sbjct: 434 RDNAETYLREYEKKLRQETGI---QSLKIGYNKVMGYYIEVTK---PNL-KYVPSYFRRR 486
Query: 537 ETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSEL 596
+T + +FT +L++L ++ + + EL + + V + + A+ ++E+
Sbjct: 487 QTLSNSERFTTEELQRLEEKILSAQTRINDLEYELYKELRERVVKELDKVGNNASAVAEV 546
Query: 597 DVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWV-NFIPNDCKLIRGK 655
D + S A +A + +P I+ + ++I+E RHP +E ++V N++PND KL R
Sbjct: 547 DFIQSLAQIAYE--KDWAKPQIH--EGYELIIEEGRHPVIE--EFVENYVPNDTKLDRD- 599
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
S+ +ITGPNM GKS++IRQVGV L++ +GSF+P RA I V D +F R+G+GD G
Sbjct: 600 SFIHVITGPNMAGKSSYIRQVGVLTLLSHIGSFIPARRAKIPVVDALFTRIGSGDVLALG 659
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
VSTFM EMLE ++IL AT++SL+I+DE+GRGTSTYDG ++ AI +++ E+++A TL A
Sbjct: 660 VSTFMNEMLEVSNILNNATEKSLVILDEVGRGTSTYDGIAISKAIVKYISEKLKAKTLLA 719
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
THF E+T L E E GV NYH+ ++ T + LY ++ G + SFGI V
Sbjct: 720 THFLEITEL--EGKIE-------GVKNYHME--VEKTPEGIRFLYILKEGKAEGSFGIEV 768
Query: 836 AEFANFPESVVTLAREKAAELED 858
A+ A PE VV AR+ ELE+
Sbjct: 769 AKLAGLPEEVVEEARKILRELEE 791
Score = 216 (81.1 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 98/411 (23%), Positives = 188/411 (45%)
Query: 208 LRDALTRCGVMLTERKKTEFKTRDLVQDLDR--LVRGSVEPVRD--LVS----GFEIAPG 259
+++ L + G L E + K V +L+ GS E ++D ++S GFE
Sbjct: 167 IKEILVKKGEKLPEELEKVLKV--YVSELEEEFFEEGSEEILKDFGVLSLQAFGFEEDTY 224
Query: 260 AL--GALLSYAELLSDESNYGNYYIRK--YSLDSYMRLDSAAMRALNVLESKTDANKNFS 315
+L GA+ YA+ + + Y R Y + ++RLD A++ L +LES + K+ S
Sbjct: 225 SLPLGAVYKYAK--TTQKGYTPLIPRPKPYRDEGFVRLDIKAIKGLEILES-LEGRKDIS 281
Query: 316 LFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRIS 375
LF +++RT T GMG+R L L P +I + VQ ++ +RQ L+ ++
Sbjct: 282 LFKVIDRTLT-GMGRRRLKFRLLSPFRSREKIERIQEGVQELKENREALLKIRQILEGMA 340
Query: 376 DIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTD 435
D+ERL+ + A +++V L S ++ +R L + + I + + D + + D
Sbjct: 341 DLERLVSKISSNMATPRELVYLKNSLKKVEELRLLLLELKAPIFKEILQNFEDTKKIIND 400
Query: 436 DDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDL 495
+ K LVE L E G +I + L L+ +++ E + K+ +
Sbjct: 401 ---IEK--TLVEDP-PLHVKEGG--LIREGVNAYLDELRFIRDNAETYLREYEKKLRQET 452
Query: 496 DLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGD 555
+ ++LK+ G+ +TK P + K + + F +T + +FT +L++L +
Sbjct: 453 GI---QSLKIGYNKVMGYYIEVTK---PNL-KYVPSYFRRRQTLSNSERFTTEELQRLEE 505
Query: 556 QYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
+ + + EL + + V + + A+ ++E+D + S A +A
Sbjct: 506 KILSAQTRINDLEYELYKELRERVVKELDKVGNNASAVAEVDFIQSLAQIA 556
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 616 (221.9 bits), Expect = 3.4e-57, P = 3.4e-57
Identities = 210/778 (26%), Positives = 381/778 (48%)
Query: 149 RENGCTIGL-GYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKT 207
+ +IG+ G T V+ F D + + +E+ ++ L E LLP++ S + +T
Sbjct: 370 KRGSVSIGIVGVQPATGEVV-FDSFQDSASRSELETRILCLQPVELLLPSDL--SEQTET 426
Query: 208 LRDALTRCGV----MLTERKK-------------TEFKTRDLVQDLDRLVRGSVEPVRDL 250
L +T V + ER K TEF +D+V ++GS + D+
Sbjct: 427 LIHRVTAMSVRDDRIRVERMKNVYFEYSHAFQEVTEFYAKDVVD-----IKGS-QSFSDI 480
Query: 251 VSGFEIAPGALGALLSYAELLSDE---SNYGNYYIRKYSLDSYMRLDSAAMRALNVLESK 307
++ + +L A++ Y + + E S N+ ++ +M ++ +R L +L+++
Sbjct: 481 INLEKPVICSLAAIIRYLKEFNLEKVLSKPKNFKQLSGEME-FMTINGTTLRNLEILQNQ 539
Query: 308 TDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV-DDTALRQD 366
TD SLF +++ T T+ G+R L W+ QPLL + EINARLD V + ++++
Sbjct: 540 TDMKTKGSLFWVLDHTKTS-FGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQ 598
Query: 367 LRQHLKRISDIERLMHNLEKRRAGLQQ---IVK-LYQSSIRLPYIRSALQQYEGQFSSLI 422
+ HL+++ DIER + ++ ++ Q+ IVK LY + A+ + S L+
Sbjct: 599 IENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQALIPAVNSHVE--SELL 656
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLER 482
+ L+ L+ +H K + + D+ E + + S + + K+E + + +
Sbjct: 657 QTFILEIPGLLSPVEHYLKILNEQAAKIG-DKTELFKDL--SDFPL-IKKRKDEIQDVTK 712
Query: 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
+I + ++ L P + + T G F I K + T ++ + + K
Sbjct: 713 KIQTHLQEIRKILKNPSAQYV-----TVSGQEFMIEVKNSAV--SCIPTDWVKIGSTKAV 765
Query: 543 VKFTNTKLKKLGDQYQKVLEEYK-NCQKELVNRVIQTAVTFSEIFKSLATM---LSELDV 598
+F + + + ++ E+ +C E + ++ F+E + +L L+ +D
Sbjct: 766 SRFHSPFIVENYRHLNQLREQLVLDCSAEWL-AFLEN---FNEHYHTLCKAVHHLATIDC 821
Query: 599 LLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEA----QDWVNFIPNDCKLIRG 654
+LS A +A Y RP + + I+++ RHP ++ QD F+PN L
Sbjct: 822 ILSLAKVAKQ--RDYCRPTLQ--EERKILIKNGRHPVIDVLLGEQD--QFVPNSTDLSGD 875
Query: 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLR 714
IITGPNMGGKS++I+QV + +MAQ+GS+VP + A+I + D IF R+GA D +
Sbjct: 876 SERVMIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYK 935
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774
G STFM+E+ +TA I++ AT +SL+I+DELGRGTST+DG +A+A EH + ++++ TLF
Sbjct: 936 GQSTFMEELTDTAEIIRKATPQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLF 995
Query: 775 ATHFHELTALAHENANEFNTKQMVGVANYHVS----AHIDSTSRKLTMLYKVEPGACDQS 830
TH+ + L + + M + N S D + LY++ G +S
Sbjct: 996 VTHYPPVCELEKSYSQQVGNYHMGFLVNEDESKQDAGEEDQVPDSVIFLYQITRGIAARS 1055
Query: 831 FGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSR 888
+G++VA+ A+ P ++ A K+ ELE V K++ +K ++D D+ +
Sbjct: 1056 YGLNVAKLADVPGEILKKAASKSKELEGL----VNMKRKKLKCFTKLWTVNDAKDLQK 1109
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 611 (220.1 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 199/716 (27%), Positives = 352/716 (49%)
Query: 172 FLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCG---VMLTERKKTEFK 228
F D + +E+ +L E LLP++ + +E R G + + T F+
Sbjct: 363 FQDSASRLELETRTASLQPVELLLPSQLSEPTEMLIRRATAVSVGDDRIRVERMNNTHFE 422
Query: 229 TRDLVQD-LDRLVRGSVEPV-RDLVSGF----EIAPGALGALLSYA-ELLSDE--SNYGN 279
Q ++ R +V+ +SG + AL A++ Y E D+ S N
Sbjct: 423 YSHAFQTVMEFYARETVDTQGSQSLSGVIHLEKPVICALAAIIRYLKEFNLDKVLSKPEN 482
Query: 280 YYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQ 339
+ ++ +MR++ +R L +L+++TD SL +++ T T+ G+R L W+ Q
Sbjct: 483 FKQLSSGME-FMRINGTTLRNLEILQNQTDMKTRGSLLWVLDHTKTS-FGRRKLKKWVTQ 540
Query: 340 PLLDVNEINARLDIVQAFV-DDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQ---IV 395
PLL + +INARLD + + ++++ + + L+++ D+ER + ++ ++ Q+ IV
Sbjct: 541 PLLKLRDINARLDAISDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLIV 600
Query: 396 K-LYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDL-D 453
K L Q L + A+ + S L++ R L+ E L+ + K L E + D
Sbjct: 601 KNLCQLKSELQALMPAVNSHVQ--SDLLRARVLEVPELLSPVEPYLK--VLNEQAAKAGD 656
Query: 454 QLENGEYMISSSYDTGLSALKNEQESLERQIHSL--HKQTASD-LDLPVDKALKLDKGTQ 510
+ E + D L +K + ++ IHS+ H Q L LP L T
Sbjct: 657 KTE----LFKDLSDFPL--IKKRKNEIQEVIHSIQMHLQELRKILKLP-----SLQYVTV 705
Query: 511 FGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYK-NCQK 569
G F + K + T ++ + + K +F + + + + ++ E+ +C
Sbjct: 706 SGQEFMVEIKNSAV--SCVPTDWVKVGSTKAVSRFHSPFVVENYRRLNQLREQLVLDCNA 763
Query: 570 ELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILE 629
E ++ + + + K++ L+ +D + S A +A Y RP + + II++
Sbjct: 764 EWLDFLENFGEHYHTLCKAV-DHLATVDCIFSLAKVAKQ--GSYCRPTLQ--EEKKIIIK 818
Query: 630 GSRHPCVEA----QDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV 685
RHP ++ QD F+PN L + IITGPNMGGKS++I+QV + ++MAQ+
Sbjct: 819 NGRHPMIDVLLGEQD--QFVPNSTNLSQDSERVMIITGPNMGGKSSYIKQVALVVIMAQI 876
Query: 686 GSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELG 745
GS+VP + A+I + D IF R GA D +G STFM+E+ +TA I++ AT RSL+I+DELG
Sbjct: 877 GSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDELG 936
Query: 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY-- 803
RGTST+DG +A+A E+ + ++++ TLF TH+ + L + M + N
Sbjct: 937 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDG 996
Query: 804 --HVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
S ++ +T LY++ G +S+G++VA+ A+ P ++ A K+ ELE
Sbjct: 997 SKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREILQKAAHKSKELE 1052
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 606 (218.4 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 204/722 (28%), Positives = 339/722 (46%)
Query: 155 IGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR 214
IG+ +DL + L++F D++ + V + L L E ++ A L +T
Sbjct: 171 IGMASIDLKNPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACAVGNSTKLFTLITE 230
Query: 215 C--GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLS 272
V T ++ F ++ +++L V V A+ ALL Y E +
Sbjct: 231 NFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYYCLAAVAALLKYVEFIQ 290
Query: 273 DESNYG--NYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGK 330
+ S Y + I + +DS++ + L +L + D N +LFG++N T T G G
Sbjct: 291 N-SVYAPKSLKICFQGSEQTAMIDSSSAQNLELLINNQDYRNNHTLFGVLNYTKTPG-GS 348
Query: 331 RLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAG 390
R L + +PL+D+ IN RLD VQ + D L L+ + R D E+L+ L +
Sbjct: 349 RRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVLVQ--IP 406
Query: 391 LQQIVKLYQSSI-RLPYIRSALQQYEG------QFSSLIKERYLDPLESLTDDDHLNKFI 443
Q V +S I L Y++ L+ + ++ + Y LE L K
Sbjct: 407 KQDTVNAAESKITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSLEDKRFGIILEKIK 466
Query: 444 ALVETSVD-----LDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLP 498
++ L+ Y + S+ + L + + I + Q LP
Sbjct: 467 TVINDDARYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLP 526
Query: 499 VDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQ 558
L+ + G ++T +L ++FI + K+ FT+ L K+ ++ Q
Sbjct: 527 ----LRTSFSSARGFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQ 582
Query: 559 KVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDI 618
+ L E + +V +++ L+ +S LD+LLSFA + + Y RP+
Sbjct: 583 ESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTL--SDYVRPEF 640
Query: 619 NPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678
D + ++ HP +E I N+ + G + F IITGPNM GKST+++Q+ +
Sbjct: 641 T--DT--LAIKQGWHPILEKISAEKPIANNTYVTEGSN-FLIITGPNMSGKSTYLKQIAL 695
Query: 679 NILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSL 738
+MAQ+GS+VP + +S + IF R+ D STFM+EM E A IL A D+SL
Sbjct: 696 CQIMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSL 755
Query: 739 IIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMV 798
I+IDELGRGT+T +G G+ +A+CE+L+ ++A TLFATHF EL H +A N + M
Sbjct: 756 ILIDELGRGTNTEEGIGICYAVCEYLLS-LKAFTLFATHFLEL---CHIDALYPNVENM- 810
Query: 799 GVANYHVSAHIDSTSR-KLTMLY--KVEPGACDQ-SFGIHVAEFANFPESVVTLAREKAA 854
++ V H+ +TSR K +LY K+ G ++ ++G+ AE ++ P S+V A+E
Sbjct: 811 ---HFEVQ-HVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITT 866
Query: 855 EL 856
++
Sbjct: 867 QI 868
Score = 39 (18.8 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 852 KAAELEDFTPSAVISDDAKIEVGSKRKRISDPN---DMSRGAARAH---QFLKEFSDMPL 905
KAAE+ PS V+ D +I R+ + + +M R A H + ++ + L
Sbjct: 846 KAAEVSSLPPSIVL-DAKEITTQITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQL 904
Query: 906 ETMDLKEALERVKRM-KDDLEK 926
+ L+ L +K+ K+D +
Sbjct: 905 DPDSLRIYLSNLKKKYKEDFPR 926
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 467 (169.5 bits), Expect = 9.8e-56, Sum P(2) = 9.8e-56
Identities = 125/371 (33%), Positives = 199/371 (53%)
Query: 490 QTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK 549
Q A LP L+ + G ++T KL ++FI + K+ FT+T
Sbjct: 484 QLAEKYSLP----LRTSFSSARGFFIQMTTDCTALFNDKLPSEFIKISKVKNSYSFTSTD 539
Query: 550 LKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSC 609
L K+ ++ Q+ L E + +V +++ L+ +S LD+LLSFA +
Sbjct: 540 LIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTL- 598
Query: 610 PTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGK 669
+ Y RP+ D + ++ HP +E + N+ + G + F IITGPNM GK
Sbjct: 599 -SDYVRPEFT--DT--LAIKQGWHPILEKISVEKPVANNTYITEGSN-FVIITGPNMSGK 652
Query: 670 STFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASI 729
ST+++Q+ + +MAQ+GS+VP + +S + + IF R+ D STFM+EM E A I
Sbjct: 653 STYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYI 712
Query: 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENA 789
L A D+SLI+IDELGRGT+T +G G+ +A+CE+L+ ++A TLFATHF EL H +
Sbjct: 713 LHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLS-LKAFTLFATHFLEL---CHIDV 768
Query: 790 NEFNTKQMVGVANYHVSAHIDSTSR-KLTMLY--KVEPGACDQ-SFGIHVAEFANFPESV 845
N + M Y H+ +TSR K +LY K+ G ++ ++G+ AE ++ P S+
Sbjct: 769 LYPNVENM-----YFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSI 823
Query: 846 VTLAREKAAEL 856
V A+E ++
Sbjct: 824 VLDAKEITTQI 834
Score = 189 (71.6 bits), Expect = 9.8e-56, Sum P(2) = 9.8e-56
Identities = 70/263 (26%), Positives = 118/263 (44%)
Query: 155 IGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR 214
IG+ +DL + L++F D++ + V + L L E ++ A L +T
Sbjct: 131 IGMASIDLKSPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITE 190
Query: 215 C--GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLS 272
V T ++ F ++ +++L V V A+ ALL Y E +
Sbjct: 191 NFKNVNFTTIQRKYFNETKGLEYIEQLCTAEFSTVLMEVQSKYYCLAAVAALLKYIEFIQ 250
Query: 273 DESNYG--NYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGK 330
+ S Y + I + +DS++ + L +L + D+ N +LFG++N T T G G
Sbjct: 251 N-SLYAPKSLKICFQGSEQTAMIDSSSAQNLELLINNQDSRNNHTLFGVLNYTKTPG-GS 308
Query: 331 RLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAG 390
R L + +PL+D+ IN RLD VQ + D L L+ + R D E+L+ L +
Sbjct: 309 RRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVIARFLDTEQLLSVLVQ--IP 366
Query: 391 LQQIVKLYQSSI-RLPYIRSALQ 412
Q V +S I L Y++ L+
Sbjct: 367 KQDTVNAAESKITNLIYLKHTLE 389
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 467 (169.5 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 125/371 (33%), Positives = 199/371 (53%)
Query: 490 QTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK 549
Q A LP L+ + G ++T KL ++FI + K+ FT+T
Sbjct: 516 QLAEKYSLP----LRTSFSSARGFFIQMTTDCTALFNDKLPSEFIKISKVKNSYSFTSTD 571
Query: 550 LKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSC 609
L K+ ++ Q+ L E + +V +++ L+ +S LD+LLSFA +
Sbjct: 572 LIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTL- 630
Query: 610 PTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGK 669
+ Y RP+ D + ++ HP +E + N+ + G + F IITGPNM GK
Sbjct: 631 -SDYVRPEFT--DT--LAIKQGWHPILEKISVEKPVANNTYITEGSN-FVIITGPNMSGK 684
Query: 670 STFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASI 729
ST+++Q+ + +MAQ+GS+VP + +S + + IF R+ D STFM+EM E A I
Sbjct: 685 STYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYI 744
Query: 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENA 789
L A D+SLI+IDELGRGT+T +G G+ +A+CE+L+ ++A TLFATHF EL H +
Sbjct: 745 LHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLS-LKAFTLFATHFLEL---CHIDV 800
Query: 790 NEFNTKQMVGVANYHVSAHIDSTSR-KLTMLY--KVEPGACDQ-SFGIHVAEFANFPESV 845
N + M Y H+ +TSR K +LY K+ G ++ ++G+ AE ++ P S+
Sbjct: 801 LYPNVENM-----YFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSI 855
Query: 846 VTLAREKAAEL 856
V A+E ++
Sbjct: 856 VLDAKEITTQI 866
Score = 189 (71.6 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 70/263 (26%), Positives = 118/263 (44%)
Query: 155 IGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR 214
IG+ +DL + L++F D++ + V + L L E ++ A L +T
Sbjct: 169 IGMASIDLKSPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITE 228
Query: 215 C--GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLS 272
V T ++ F ++ +++L V V A+ ALL Y E +
Sbjct: 229 NFKNVNFTTIQRKYFNETKGLEYIEQLCTAEFSTVLMEVQSKYYCLAAVAALLKYIEFIQ 288
Query: 273 DESNYG--NYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGK 330
+ S Y + I + +DS++ + L +L + D+ N +LFG++N T T G G
Sbjct: 289 N-SLYAPKSLKICFQGSEQTAMIDSSSAQNLELLINNQDSRNNHTLFGVLNYTKTPG-GS 346
Query: 331 RLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAG 390
R L + +PL+D+ IN RLD VQ + D L L+ + R D E+L+ L +
Sbjct: 347 RRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVIARFLDTEQLLSVLVQ--IP 404
Query: 391 LQQIVKLYQSSI-RLPYIRSALQ 412
Q V +S I L Y++ L+
Sbjct: 405 KQDTVNAAESKITNLIYLKHTLE 427
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 577 (208.2 bits), Expect = 2.5e-55, P = 2.5e-55
Identities = 162/576 (28%), Positives = 300/576 (52%)
Query: 298 MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIV-QA 356
M+ L +L+++TD SL +++ T T+ G+R L W+ QPL+ +EINARLD V +
Sbjct: 1 MKNLEILQNQTDLKTKGSLLWVLDHTKTS-FGRRRLKKWVIQPLMKCSEINARLDAVSEI 59
Query: 357 FVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPY-IRSALQQYE 415
+ ++++ ++ L ++ D+ER + ++ ++ Q+ + + RL I++ +
Sbjct: 60 LLSESSVFGQIQNLLCKLPDLERGLCSVFHKKCSTQEFFLIVSTLSRLDSEIQALVPVIH 119
Query: 416 GQFSS-LIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALK 474
S L++ L+ E L+ H K + E + D+ + + D + K
Sbjct: 120 SHVKSPLLQNALLEIPELLSPVKHYLKILN-EEAAKTGDKTQ----LFKDLTDFPVIRKK 174
Query: 475 NEQ--ESLER-QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTT 531
E+ + L + Q+H L + + P + + + G +F + + + I + +
Sbjct: 175 KEEILDVLSKIQLHLL--EIRKQIKNPSAEYVTVS-GQEF-----LVEVKNSHI-SSVPS 225
Query: 532 QFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYK-NCQKELVNRVIQTAVTFSEIFKSLA 590
++++ + K +F + + + ++ E+ +C E + + + + + K++
Sbjct: 226 NWVMVSSTKAVSRFHSPFITENYRHLNQLREQLVLDCGAEWLRFLDHFSEHYHTVSKAIG 285
Query: 591 TMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEA----QDWVNFIP 646
L+ +D L S A A Y RP + + +II++ RHP ++ QD ++P
Sbjct: 286 H-LATIDCLFSLAQAAKQ--GDYCRPVVKD-NQQEIIIKNGRHPVIDVLLGEQD--QYVP 339
Query: 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARV 706
N L R IITGPNMGGKS++I+QV + +MAQ+GS+VP + +++ + D IF R+
Sbjct: 340 NTTNLSRDGERVMIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEESTVGIVDGIFTRM 399
Query: 707 GAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766
GA D +G STFM+E+ +TA I++ AT RSL+I+DELGRGTST+DG +A+A EH +
Sbjct: 400 GAADNIYKGRSTFMEELTDTAEIIRRATSRSLVILDELGRGTSTHDGIAIAYATLEHFIT 459
Query: 767 EIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK-----LTMLYK 821
++ + TLF TH+ + L + + M + N SA + + +T LY+
Sbjct: 460 DVESLTLFVTHYPSVCELENVYPGKVGNYHMAFLVNKEESAEQKGSEEEENPEFVTFLYQ 519
Query: 822 VEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
+ G +S+G++VA+ A+ PE ++ A K+ ELE
Sbjct: 520 ITKGVTARSYGLNVAKLADIPEEILKKAAHKSKELE 555
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 466 (169.1 bits), Expect = 2.6e-55, Sum P(3) = 2.6e-55
Identities = 111/304 (36%), Positives = 171/304 (56%)
Query: 553 LGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTP 612
LG + + + + +N + +++ + + S + +AT L LD L SFA LA+
Sbjct: 663 LGHELELLNLKIRNEEANIIDLFKRKFIDRSNEVRQVATTLGYLDTLSSFAVLANE--RN 720
Query: 613 YTRPDINPPDVGDIILEGSRHPCVE----AQDWVNFIPNDCKLIRGKSWFQIITGPNMGG 668
P ++ + +++ RH VE A+ F N+C+L + W +ITGPNMGG
Sbjct: 721 LVCPKVDESNKLEVV--NGRHLMVEEGLSARSLETFTANNCELAKDNLW--VITGPNMGG 776
Query: 669 KSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETAS 728
KSTF+RQ + +++AQ+G FVPC +A + + D +F+RVG+ D +STFM EM+ET+
Sbjct: 777 KSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVEMIETSF 836
Query: 729 ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF-HELTALAHE 787
IL+GAT+RSL I+DE+GRGTS +G +A+A ++L+E + TLFATHF EL +
Sbjct: 837 ILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQELKQIIDN 896
Query: 788 NANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVT 847
+ K M ++ S D +K++PG C +S I VAE A FP +
Sbjct: 897 KCS----KGMSEKVKFYQSGITDLGGNNFCYNHKLKPGICTKSDAIRVAELAGFPMEALK 952
Query: 848 LARE 851
ARE
Sbjct: 953 EARE 956
Score = 183 (69.5 bits), Expect = 2.6e-55, Sum P(3) = 2.6e-55
Identities = 92/391 (23%), Positives = 166/391 (42%)
Query: 112 RLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPN-----FRENGCTIGLGYVDLTKRV 166
R+ + TPG ++ D F N ++T ++ FP + +G+ + D++
Sbjct: 181 RVTRIVTPG---TFIDEAFENLR-ENTYLLNIEFPENCMSQVADTSLKVGICWCDVSTGE 236
Query: 167 LGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSS-ECKTLRDALTRCGVMLTERKKT 225
+ F+ + ++ SA+ + KE LL ++ E T L + +K
Sbjct: 237 I----FVQQVYLRDLVSAITRIQPKEILLDERLLEFHIESGTWYPELVELKKFFIKYQKM 292
Query: 226 EFKTRDLVQDLDRLVRGSVEPV-RDLVSGFE-IAPGALGALLSYAELLSDE-SNYG-NYY 281
+ R + G E R L F+ L AL + +S+ ++ N+
Sbjct: 293 PSQHRTIESFYGLFNLGGKEATERQLKIQFQTFTQKELAALRNTLIYVSNHLPDFSINFQ 352
Query: 282 IRKYSL-DSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQP 340
I + L + M++DS AL + + D NK SL + RT T G RLL WL P
Sbjct: 353 IPQRQLATAIMQIDSRTSTALELHSTVRDNNKKGSLLSSIRRTVTPS-GTRLLSQWLSGP 411
Query: 341 LLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQS 400
LD+ EI R IV F D+ + + LR LK+++D+ R++ R +++++ +S
Sbjct: 412 SLDLKEIKKRQKIVAFFKDNRDITETLRTMLKKVNDLSRILQKFSFGRGEALELIQMARS 471
Query: 401 SIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDD----DHLNKFIALVETSVDLDQLE 456
IR L + +K + ESL + D + KF+ E + D +
Sbjct: 472 LEVSREIRKYLLNNTSLMKATLKSQITQLTESLNFEKNLIDDILKFLNEEELAKSQDAKQ 531
Query: 457 NGEYMISSSYDTGLSALKNEQESLERQIHSL 487
N + ++ D + K+++ES + +I L
Sbjct: 532 NAD--VTRMLDIDV---KDKKESNKDEIFEL 557
Score = 49 (22.3 bits), Expect = 2.6e-55, Sum P(3) = 2.6e-55
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 547 NTKLKKLGDQYQKVLEE 563
NTKL+KL D YQ V ++
Sbjct: 567 NTKLRKLHDTYQGVWQK 583
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 598 (215.6 bits), Expect = 3.0e-55, P = 3.0e-55
Identities = 212/788 (26%), Positives = 381/788 (48%)
Query: 155 IGL-GYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSE-------CK 206
IG+ G +T V+ F D + + +E+ ++ L E LLP+ + +E
Sbjct: 311 IGIVGVQPVTGEVV-FDSFQDSASRSELETRILCLQPVEMLLPSRLSEQTETLVHRATAA 369
Query: 207 TLRD---ALTRCGVMLTE-----RKKTEFKTRDLVQ-DLDRLVRGSVEPVRDLVSGFEIA 257
++RD + R + E + TEF +D V + G + + ++
Sbjct: 370 SVRDDRIRVERMDNVYFEYSHAFQAVTEFYAKDAVDIQASQSFSGIINLEKPVICSLAAV 429
Query: 258 PGALGALLSYAELLSDESNYGNYYIRKYSLD-SYMRLDSAAMRALNVLESKTDANKNFSL 316
L + ++LS N+ +++S + +M ++ +R L +L+++TD SL
Sbjct: 430 IRYLKEF-NLEKVLSKPKNF-----KQFSGEMEFMTINGTTLRNLEILQNQTDMKTKGSL 483
Query: 317 FGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV-DDTALRQDLRQHLKRIS 375
+++ T T+ G+R L W+ QPLL + EINARLD V + ++++ + HL+++
Sbjct: 484 LWVLDHTKTS-FGRRKLKKWVVQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLP 542
Query: 376 DIERLMHNLEKRRAGLQQ---IVK-LYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLE 431
DIER + ++ ++ Q+ IVK LY + A+ + S L++ L+ E
Sbjct: 543 DIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQALIPAVNSHVQ--SDLLRTFILEIPE 600
Query: 432 SLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGL-SALKNEQESLERQIHSLHKQ 490
L+ +H + + + D+ E + D L K+E + + +I +H Q
Sbjct: 601 LLSPVEHYLRILNEQAAKIG-DKTE----LFKDLTDFPLIKKRKDEIQEVTDKIQ-MHLQ 654
Query: 491 TASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKL 550
+ L K L T G F I K + T ++ + + K +F + +
Sbjct: 655 EIRKI-L---KNPSLQYVTVSGQEFMIEIKNSAV--SCIPTDWVKVGSTKAVSRFHSPFI 708
Query: 551 KKLGDQYQKVLEEYK-NCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSC 609
+ ++ E+ +C E ++ + + + + K++ L+ +D + S A +A
Sbjct: 709 VENYRHLNQLREQLVLDCSAEWLDFLENFSAHYHSLCKAVHH-LATVDCIFSLAKVAKQ- 766
Query: 610 PTPYTRPDINPPDVGDIILEGSRHPCVEA----QDWVNFIPNDCKLIRGKSWFQIITGPN 665
Y RP + + I+++ RHP ++ QD ++PN L IITGPN
Sbjct: 767 -GDYCRPSLQ--EERKIVIKNGRHPVIDVLLGEQD--QYVPNSTNLSGDSERVMIITGPN 821
Query: 666 MGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLE 725
MGGKS++I+QV + +MAQ+GS+VP + A+I + D IF R+GA D +G STFM+E+++
Sbjct: 822 MGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELMD 881
Query: 726 TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785
TA I++ AT +SL+I+DELGRGTST+DG +A+A EH + ++++ TLF TH+ + L
Sbjct: 882 TAEIIRQATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCEL- 940
Query: 786 HENANEFNTKQMVGVANYHVSAHIDSTSRK-----------LTMLYKVEPGACDQSFGIH 834
E + Q VG NYH+ ++ K +T LY++ G +S+G++
Sbjct: 941 -----EKSYLQEVG--NYHMGFLVNEDENKEDPGEEPVPDFVTFLYQITRGIAARSYGLN 993
Query: 835 VAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAH 894
VA+ A+ P ++ A K+ ELE V +++ +K ISD D+ +
Sbjct: 994 VAKLADVPGEILKKAASKSKELEGL----VNMKRKRLKCFTKLWMISDGKDLQKWTDEFE 1049
Query: 895 QFLKEFSD 902
++E SD
Sbjct: 1050 --MEEISD 1055
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 598 (215.6 bits), Expect = 3.9e-55, P = 3.9e-55
Identities = 193/661 (29%), Positives = 335/661 (50%)
Query: 225 TEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDE---SNYGNYY 281
TEF +D V ++GS + + +V+ + +L A++ Y + + E S N+
Sbjct: 473 TEFYAKDTVD-----IKGS-QIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFK 526
Query: 282 IRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL 341
++ +M ++ +R L +L+++TD SL +++ T T+ G+R L W+ QPL
Sbjct: 527 QLSSKME-FMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTS-FGRRKLKKWVTQPL 584
Query: 342 LDVNEINARLDIVQAFV-DDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQ---IVK- 396
L + EINARLD V + ++++ + HL+++ DIER + ++ ++ Q+ IVK
Sbjct: 585 LKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKT 644
Query: 397 LYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLE 456
LY I A+ + S L++ L+ E L+ +H K + V D+ E
Sbjct: 645 LYHLKSEFQAIIPAVNSHIQ--SDLLRTVILEIPELLSPVEHYLKILNEQAAKVG-DKTE 701
Query: 457 NGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFR 516
+ + S + + K+E + + +I +H Q + L A + T G F
Sbjct: 702 LFKDL--SDFPL-IKKRKDEIQGVIDEIR-MHLQEIRKI-LKNPSAQYV---TVSGQEFM 753
Query: 517 ITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYK-NCQKELVNRV 575
I K + T ++ + + K +F + + + ++ E+ +C E ++ +
Sbjct: 754 IEIKNSAV--SCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFL 811
Query: 576 IQTAVTFSEIFKSLATM---LSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSR 632
+ FSE + SL L+ +D + S A +A Y RP + + I+++ R
Sbjct: 812 EK----FSEHYHSLCKAVHHLATVDCIFSLAKVAKQ--GDYCRPTVQ--EERKIVIKNGR 863
Query: 633 HPCVEA----QDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF 688
HP ++ QD ++PN+ L IITGPNMGGKS++I+QV + +MAQ+GS+
Sbjct: 864 HPVIDVLLGEQD--QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY 921
Query: 689 VPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGT 748
VP + A+I + D IF R+GA D +G STFM+E+ +TA I++ AT +SL+I+DELGRGT
Sbjct: 922 VPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATSQSLVILDELGRGT 981
Query: 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808
ST+DG +A+A E+ + ++++ TLF TH+ + L E N VG NYH+
Sbjct: 982 STHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCEL------EKNYSHQVG--NYHMGFL 1033
Query: 809 IDSTSRKL------------TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAEL 856
+ KL T LY++ G +S+G++VA+ A+ P ++ A K+ EL
Sbjct: 1034 VSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKEL 1093
Query: 857 E 857
E
Sbjct: 1094 E 1094
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 491 (177.9 bits), Expect = 4.5e-55, Sum P(2) = 4.5e-55
Identities = 138/430 (32%), Positives = 214/430 (49%)
Query: 431 ESLTDDDHLNKFIALVETSV----DLDQLENGEYMISSSYDTGLSALKNEQESLERQIHS 486
E + D+ N + +V+ S+ D+ Q +++ S+++ L L + +SL
Sbjct: 516 EEILQDE--NAQVEIVKKSLSSEFDIRQSFKENWVVKSNFNNNLRKLHEKLQSLFASYDK 573
Query: 487 LHKQTASDLDLPVDKALKLDKG-TQFGHV-FRITKKEEPKIRKKLTTQFIVLETRKDGVK 544
L + DL + K L K + +V +++ E + K TQ ++ ++ K
Sbjct: 574 LQE----DLSKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQSTKSTAS 629
Query: 545 FTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFAD 604
F LG + ++ ++ + V+ + +SLA L ELD+ S A
Sbjct: 630 FQLPGWTSLGMDLENTKLHIHQEEQRVLKSITDEIVSHHKTLRSLANALDELDISTSLAT 689
Query: 605 LASSCPTPYTRPDINPPDVGDIILEGSRHPCVE---AQDWVNFIPNDCKLIRGKSWFQII 661
LA + RP ++ +I +G RHP VE + + F PNDC + G +I
Sbjct: 690 LAQE--QDFVRPVVDDSHAHTVI-QG-RHPIVEKGLSHKLIPFTPNDCFVGNGNVNIWLI 745
Query: 662 TGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQ 721
TGPNM GKSTF+RQ + ++AQ+GSFVP A I + D IF+R+G+ D + STFM
Sbjct: 746 TGPNMAGKSTFLRQNAIISILAQIGSFVPASNARIGIVDQIFSRIGSADNLYQQKSTFMV 805
Query: 722 EMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781
EM+ET+ ILK AT RS +I+DE+GRGT+ DG +A+ ++L + TLFATH H+L
Sbjct: 806 EMMETSFILKNATRRSFVIMDEIGRGTTASDGIAIAYGCLKYLSTINHSRTLFATHAHQL 865
Query: 782 TALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
T L TK V Y + ID + YK++ G QS G+ VAE A
Sbjct: 866 TNL---------TKSFKNVECYCTNLSIDRDDHTFSFDYKLKKGVNYQSHGLKVAEMAGI 916
Query: 842 PESVVTLARE 851
P++V+ A E
Sbjct: 917 PKNVLLAAEE 926
Score = 158 (60.7 bits), Expect = 4.5e-55, Sum P(2) = 4.5e-55
Identities = 89/352 (25%), Positives = 150/352 (42%)
Query: 153 CTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDAL 212
C IGL ++DL+ F DS+ + L + +E +L E++KS +
Sbjct: 215 CKIGLSWLDLSTGEF----FTQDSNLQRLAGDLTRISPREIVLD-ESLKSFTTHPIYS-- 267
Query: 213 TRCGVMLTERKKTEFKTRDLVQDLD---RLVRGSVEP-VRDLVSGFEIAPGALGALLSY- 267
+ ERK + Q LD + + ++P + E+ G L+SY
Sbjct: 268 -----FIQERKYFLSYVENRYQSLDCWNKFLEKEIDPSFIKYCTKLEVTAGC--TLISYI 320
Query: 268 AELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAG 327
A+ L + IR SL+ YM + +AM+ L + S SL +N+T T
Sbjct: 321 ADRLQNSHPNIQPPIR-VSLNEYMIIGESAMKGLEIRSSLYQNRYTGSLLHAINKTVTKS 379
Query: 328 MGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKR 387
G RLL L P ++ EIN RLD+V+ F L + LK+ +D R++ +L
Sbjct: 380 -GSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKVINLLKKSNDTHRILQHLLMG 438
Query: 388 RAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVE 447
R ++K+ + I S L E SS R L L ++ D L + L+
Sbjct: 439 RGNSYDLLKMADNFSITKEIHSLLSPLES--SSAF--RLL--LLNMHPHDELKQ---LIN 489
Query: 448 TSVDLDQLENGEYMISSSYDTGLSALKNEQ--ESLERQIHSLHKQTASDLDL 497
+VD + L + I+ +T + A + E+ + Q+ + K +S+ D+
Sbjct: 490 NAVDENALMKQK--INEEEETEVIAQEAEEILQDENAQVEIVKKSLSSEFDI 539
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 506 (183.2 bits), Expect = 9.3e-55, Sum P(2) = 9.3e-55
Identities = 137/411 (33%), Positives = 223/411 (54%)
Query: 464 SSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEP 523
+SYD A++N ++ L+ + + +Q DK +K +G + + E+
Sbjct: 806 NSYDLATEAVQNVEKKLQNYLVQIQQQMK-------DKTIK------YGLRYELEINEDL 852
Query: 524 KIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVT-F 582
K F T K G K+ + K+L + + L+E ++ QK+ + + F
Sbjct: 853 VKGNKKPKNFDF--TSKAG-KYQRFQTKELRELIAE-LDEAEDVQKKELKEFCRFIFKEF 908
Query: 583 SEIFKS---LATMLSELDVLLSFADLASSCPTPY-TRPDINPPD---VGDIILEGSRHPC 635
E +K+ L +L+ELD L+S + ++ +RP++ P V I L RHPC
Sbjct: 909 YESYKTWDTLINILAELDCLISLSRVSFLLADGVMSRPELYPASEKYVPFIELTSGRHPC 968
Query: 636 VEAQDWVNFIPNDCKL--IRGKSWFQ------IITGPNMGGKSTFIRQVGVNILMAQVGS 687
+ + VNFIPND L I+ F+ ++TGPNMGGKST +R V ++AQ+G
Sbjct: 969 LASMG-VNFIPNDIYLGDIKQTGQFEDNKNLILLTGPNMGGKSTTLRMACVMAILAQIGC 1027
Query: 688 FVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRG 747
+VP +++ D IF R+GA D + G STF EM ET++ +K + SLII+DELGRG
Sbjct: 1028 YVPAKSLRMTLVDRIFTRIGASDKLMDGKSTFFIEMEETSNAVKQGSKHSLIIMDELGRG 1087
Query: 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807
TST+DG +A++I +LVE +++ LFATH+H L +EF + +A YH++
Sbjct: 1088 TSTFDGVAIAYSIVRYLVENLQSRCLFATHYHVLL-------DEF--RHYPQIAYYHMAC 1138
Query: 808 HIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858
H+D K+ LY+++ G C SFGI+VA+ ++++ +A++KA E E+
Sbjct: 1139 HVDEKRSKVIFLYRLKAGECSSSFGINVAKVVGISDNLIEIAKQKAKEFEE 1189
Score = 145 (56.1 bits), Expect = 9.3e-55, Sum P(2) = 9.3e-55
Identities = 71/281 (25%), Positives = 122/281 (43%)
Query: 245 EPVRDLVSGFEIAPGALGALLSYAEL--LSDESNYGNYYIRKYSLDSYMRLDSAAMRALN 302
E RDL+ FE G L S L + + Y Y I K + S M LDS +++ L
Sbjct: 505 ETKRDLI--FESMAGLFNYLKSILILDQVISVARYQIYDIEK-GVRSCMILDSQSLQHLE 561
Query: 303 VLESKTDA----NKNF-------SLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARL 351
+L+S + +N+ SL G +N+T T G R+L W+ PL+D+N+I R
Sbjct: 562 ILDSSSGPVSTQKENYKLHFDDGSLLGYINKTKTP-FGYRMLKNWICAPLMDINKIYDRY 620
Query: 352 DIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKR--RAGLQQIVKLYQSSI-RLPYIR 408
D ++ + R + ++++ D+E++ + K R Q +V S RL +
Sbjct: 621 DAIEDLQKFNSERDTFLRGIEKLPDLEKMCGRIYKYSIRQQNQNVVYFEDFSYSRLKEFK 680
Query: 409 SALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDT 468
+ + LIK +L P L K + T +D + EY + +
Sbjct: 681 DLTTKL-AESEKLIKT-HLTPFADQFKSKRLRKLV----TPNTIDHEDEEEYELPAMIYH 734
Query: 469 GLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGT 509
G S +E++ +E I+ H A +++ +K K K +
Sbjct: 735 GYS---DEEDEVEENINQ-HAAKAEKMEIE-NKQSKKSKSS 770
Score = 66 (28.3 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 46/203 (22%), Positives = 81/203 (39%)
Query: 123 GSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVE 182
G+Y+ NNE P + NF+ G+ V+ + V+ +A DD HFT +
Sbjct: 375 GTYDQ----NNETDYQPRYLMSLRNFQTK---FGIIIVESSTNVITVAYLNDDIHFTQFK 427
Query: 183 SALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDR---- 238
+ L + +E + + + K ++ + + K + LD+
Sbjct: 428 TLLCQVKPQEIVYDPDNMTHDIKKIIQSGYLAPQLSPLQNKNDNWNKGMAYNHLDKTHGD 487
Query: 239 LVRG-----------SVEPVRDLVSGFEIAPGALGALLSYAEL--LSDESNYGNYYIRKY 285
++ G + E RDL+ FE G L S L + + Y Y I K
Sbjct: 488 VLEGKWPKLLNNLYNTEETKRDLI--FESMAGLFNYLKSILILDQVISVARYQIYDIEK- 544
Query: 286 SLDSYMRLDSAAMRALNVLESKT 308
+ S M LDS +++ L +L+S +
Sbjct: 545 GVRSCMILDSQSLQHLEILDSSS 567
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 589 (212.4 bits), Expect = 2.3e-54, P = 2.3e-54
Identities = 183/608 (30%), Positives = 307/608 (50%)
Query: 261 LGALLSYAELLSDESNY--GNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFG 318
L +SY S E + N+Y + + S M L A+ L + ++TD SLF
Sbjct: 371 LDMAISYLMEFSLEDLFVASNFY-QPFDSISSMVLSKQALEGLELFVNQTDHTPVGSLFW 429
Query: 319 LMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQ--AFVDDTALRQDLRQHLKRISD 376
+++RT T G+R+L WL++PL+D I RLD V+ AF ++ + Q +R+ L R+ D
Sbjct: 430 VLDRTYTR-FGQRMLQRWLQKPLVDKENIIERLDAVEELAFNSNSQV-QAIRKMLYRLPD 487
Query: 377 IERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSL--IKERYLDPLESLT 434
+E+ + + +R G + + + + + L++ Q S+ I + +L +
Sbjct: 488 LEKGLSRIYYQR-GFYKAASAFSKNSYSCFKSALLRRLIQQLPSISSIIDHFLGMFDQKE 546
Query: 435 DDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLE-RQIHSLHKQTAS 493
+++ NK V+ D+D + E Y+ + + L R H Q
Sbjct: 547 AENN-NK----VDMFKDIDNFDLSEEPNDVDYELAQEIRELKMSILMVRTEMDFHLQELR 601
Query: 494 D-LDLPVDKALKLDKGTQFGHV-FRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLK 551
D L+ P L+ +G+V F I E K KK+ +I L + + +F K++
Sbjct: 602 DYLEYP-----NLEFSI-WGNVKFCI---EVSKGCKKIPPDWIKLSSTRSLFRFHTPKIQ 652
Query: 552 KLGDQYQKVLEEYKNCQKELVNRVIQTAVT--FSEIFKSLATMLSELDVLLSFADLASSC 609
L + EE E + R + ++ ++E+ +++ T+L LD L+SFA ++S
Sbjct: 653 SLLIELSSH-EENLTISSEKIYRSFLSRISEHYNEL-RNVTTVLGTLDCLISFARISSQ- 709
Query: 610 PTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGK 669
+ YTRP+ + + +++ SRHP +E +F+PN L +ITGPNMGGK
Sbjct: 710 -SGYTRPEFSDKE---LLIHESRHPMIELLSDKSFVPNHIHLSSDGVRCLLITGPNMGGK 765
Query: 670 STFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASI 729
S+F++Q+ ++ +MAQ G FVP A + + D I R+G+ D +STFM EMLET +
Sbjct: 766 SSFVKQLALSAIMAQSGCFVPAKSALLPIFDSILIRMGSSDNLSVNMSTFMVEMLETKEV 825
Query: 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENA 789
L AT++S++IIDELGRGTST DG +++A+ +L + I++ LF THF L L
Sbjct: 826 LSKATEKSMVIIDELGRGTSTIDGEAISYAVLHYLNQYIKSYLLFVTHFPSLGILERRFE 885
Query: 790 NEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 849
+ M G S S+ ++ LYK+ PG +S+G++VA A P S+++ A
Sbjct: 886 GQLRCFHM-GYLKSKEDFET-SVSQSISFLYKLVPGVASKSYGLNVARMAGIPFSILSRA 943
Query: 850 REKAAELE 857
E + E
Sbjct: 944 TEISENYE 951
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 577 (208.2 bits), Expect = 9.1e-54, P = 9.1e-54
Identities = 171/531 (32%), Positives = 280/531 (52%)
Query: 350 RLDIVQAFVD--DTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYI 407
R ++ F D + LRQD + + +D+ +++ L+++ +S+ P
Sbjct: 306 RNTLINPFYDLKEITLRQDSVEFFLQQADLRKILKRQLSCVRDLERLATKISTSLATPKD 365
Query: 408 RSALQQYEGQFSSLIKERYLDPLESLTDDDHL-NKFI------ALVET-SVDLDQ---LE 456
L+ S L D L++ + L NKF+ +L++T S +L Q L+
Sbjct: 366 IGTLRD-----SLLSCTHIADNLQNCALPEFLENKFLIAPPLCSLIKTLSTELIQELPLK 420
Query: 457 NGEYMI-SSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVF 515
E I ++ Y L L+N +E+ + I ++ ++ + K LK+ G+
Sbjct: 421 VSEGNIFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGI---KKLKVCYAQALGYYI 477
Query: 516 RITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRV 575
+ P++ K +FI ++R +FT +L++ D+ V ++ + + +L +
Sbjct: 478 EVASNLAPQLPK----EFIRRQSRLHAERFTTQELQQFQDEVFSVEDKLQTLETKLFKEL 533
Query: 576 IQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHP- 634
V ++ L+T +++LD ++S A+LA+ Y RP ++ D I +G HP
Sbjct: 534 CFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYD--YRRPLVDHSDALSIT-KGM-HPV 589
Query: 635 CVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRA 694
+ D FIPND + ++ ++TGPNM GKST+IRQ+ + ++MAQ+GSF+P A
Sbjct: 590 ALTLLDKGTFIPNDTVMHSAQTRMILLTGPNMAGKSTYIRQIALLVIMAQMGSFIPARSA 649
Query: 695 SISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGF 754
I + D IF R+GAGD +G+STFM EM ETA+IL ATDRSL+I+DE+GRGTSTYDG
Sbjct: 650 HIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVILDEIGRGTSTYDGL 709
Query: 755 GLAWAICEHLV--EEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDST 812
+A A+ E L+ + +A TLFATH+ ELT L E + + V N+H A +
Sbjct: 710 AIAQAVVEFLLFTDGKKAKTLFATHYKELTEL------EMHCQH---VENFH--AMVKEN 758
Query: 813 SRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE--DFTP 861
S + +Y++ G +SFGIHVA+ A FP SVV+ A++ + E D P
Sbjct: 759 SGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFEGPDLRP 809
Score = 238 (88.8 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 116/475 (24%), Positives = 209/475 (44%)
Query: 152 GCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDA 211
G GL +DL+ +AE+ D+ +E A+ L E L + + +E ++
Sbjct: 130 GSLYGLSCLDLSIGTFLVAEY--DNTKDLIE-AICRLAPTELLSHAKFYQKNEA-VIKQL 185
Query: 212 LTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAE-- 269
+ L+E F+ + + L + S L G A A GALLSY +
Sbjct: 186 QQHLRITLSEYVSWAFEYQSATKKLYTCFQVSSLDGFGL-QGLVPAINAAGALLSYIQDK 244
Query: 270 LLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMG 329
LL S+ I Y ++ +D A+ L +L ++ SL +M RT T MG
Sbjct: 245 LLLPISHLSIPKI--YGQQKHLLIDKASQTNLELLSPIHGEHRKGSLLQVMERTSTP-MG 301
Query: 330 KRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRA 389
RLL L P D+ EI R D V+ F+ LR+ L++ L + D+ERL + A
Sbjct: 302 GRLLRNTLINPFYDLKEITLRQDSVEFFLQQADLRKILKRQLSCVRDLERLATKISTSLA 361
Query: 390 GLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYL--DPLESLTDDDHLNKFIALVE 447
+ I L S + +I LQ ++ ++L PL SL L+ L++
Sbjct: 362 TPKDIGTLRDSLLSCTHIADNLQNCA--LPEFLENKFLIAPPLCSLIKT--LST--ELIQ 415
Query: 448 TSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDK 507
+ L ++ G + ++ Y L L+N +E+ + I ++ ++ + K LK+
Sbjct: 416 -ELPL-KVSEGN-IFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGI---KKLKVCY 469
Query: 508 GTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNC 567
G+ + P++ K +FI ++R +FT +L++ D+ V ++ +
Sbjct: 470 AQALGYYIEVASNLAPQLPK----EFIRRQSRLHAERFTTQELQQFQDEVFSVEDKLQTL 525
Query: 568 QKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPD 622
+ +L + V ++ L+T +++LD ++S A+LA+ Y RP ++ D
Sbjct: 526 ETKLFKELCFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYD--YRRPLVDHSD 578
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 477 (173.0 bits), Expect = 9.3e-54, Sum P(2) = 9.3e-54
Identities = 118/329 (35%), Positives = 180/329 (54%)
Query: 531 TQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLA 590
++F ++ + + ++ +LG E + ++ +++ + + +T+S +++A
Sbjct: 635 SRFRIIRSSANTCWLSHEPWNELGKAMHLTTLELLDEERYILDNLQRKIITYSTEIRAIA 694
Query: 591 TMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVE--AQDWV--NFIP 646
+ LDVL SFA LAS P ++ +I+ G RH VE Q NF
Sbjct: 695 QTVDYLDVLSSFAILASE--KNLVCPQVDESSALEIV--GGRHLVVEDGLQSRAPGNFTA 750
Query: 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARV 706
NDC L G W I+TGPNMGGKSTF+RQ + +++AQ+G +VPC A I + D IF+RV
Sbjct: 751 NDCSLQNGDIW--IVTGPNMGGKSTFLRQTAIIVILAQIGCYVPCASAHIGLVDKIFSRV 808
Query: 707 GAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766
G+ D +STFM EMLET+ +LKGAT RSL I+DE+GRGT+ DG G+A+ H++
Sbjct: 809 GSADDLYNDMSTFMVEMLETSFMLKGATKRSLAILDEIGRGTNAEDGVGIAYTTLHHMLT 868
Query: 767 EIRAPTLFATHF-HELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPG 825
+ R LFA+HF EL+ L ++ ++ V +V H R +K+ PG
Sbjct: 869 KNRCRALFASHFGRELSELVEQHLPP-GARKRVHFYRTNVREH---NGRSFYD-HKITPG 923
Query: 826 ACDQSFGIHVAEFANFPESVVTLAREKAA 854
C S I VA+ A FP+ + +AR A
Sbjct: 924 ICLSSDAIRVAQMAGFPQEALDVARRVLA 952
Score = 161 (61.7 bits), Expect = 9.3e-54, Sum P(2) = 9.3e-54
Identities = 61/232 (26%), Positives = 105/232 (45%)
Query: 260 ALGALLSYAELLSDESNYGNYYIRKYSL--DSYMRLDSAAMRALNVLESKTDANKNFSLF 317
AL A L+Y E E N K SL DS M++DS AL + + D K SL
Sbjct: 326 ALRANLTYIEQHLPEM-LANLAFPKRSLTTDS-MQIDSRTSAALELHNTFRDNLKRGSLL 383
Query: 318 GLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDI 377
+ RT T G RLL WL P + ++EI R ++V+ F+ + + +L LK +D+
Sbjct: 384 SAIRRTVTPS-GTRLLTQWLSAPSMHLDEIKQRQNLVRLFMQNPFVTDNLIAQLKATADM 442
Query: 378 ERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQY--EGQFSSLIKERYLDPLESLT- 434
R++ +R ++++ QS + I + + EG S + LD L S
Sbjct: 443 TRILQKFSFKRGDAAHLLQMAQSLQQCSAIGDTIHSFTTEGPISKDLAA-VLDKLSSALR 501
Query: 435 -DDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIH 485
+ + + +A + + E G ++++ D +L++ E+ E +H
Sbjct: 502 FEGGIVQEILAAINLK-KFSEFE-GPQLVTAPEDEPALSLEDSNETTEFPVH 551
Score = 42 (19.8 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEY 564
TQ G + + + K KL E V F L++L + +++EY
Sbjct: 94 TQMGSFYELYYEHAEKYAPKLNITLTRREYSHGKVPFAGFPLEQLSRHLKVLVKEY 149
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 446 (162.1 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 113/317 (35%), Positives = 165/317 (52%)
Query: 556 QYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATM--LSELDVLLSFADLASSCPTPY 613
Q Q V +E L+ I+ A +SE+ +++ + L + S + A S P
Sbjct: 733 QNQDVTDENAETLTILIELFIERATQWSEVIHTISCLDVLRSFAIAASLS--AGSMARPV 790
Query: 614 TRP-----DINPPDVGDII-LEGSRHPCVEAQDWVNFIPNDCKL--IRGKSWF-----QI 660
P D N G I+ ++G HP A D +PND L R S +
Sbjct: 791 IFPESEATDQNQKTKGPILKIQGLWHPFAVAADGQLPVPNDILLGEARRSSGSIHPRSLL 850
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
+TGPNMGGKST +R + ++ AQ+G +VPC+ IS+ D IF R+GA D + G STF+
Sbjct: 851 LTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFL 910
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780
E ETAS+L+ AT SL+I+DELGRGTST+DG+ +A+++ HLVE+++ LFATH+H
Sbjct: 911 VECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHP 970
Query: 781 LTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFAN 840
LT + +K M + L LY++ GAC +S+G+ VA A
Sbjct: 971 LTK-EFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVFLYRLTEGACPESYGLQVALMAG 1029
Query: 841 FPESVVTLAREKAAELE 857
P VV A A ++
Sbjct: 1030 IPNQVVETASGAAQAMK 1046
Score = 187 (70.9 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 64/243 (26%), Positives = 113/243 (46%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRD-ALT- 213
G +VD + DD+ + + L+ + KE L ++ + K LR LT
Sbjct: 408 GFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKYTLTG 467
Query: 214 RCGVMLTERKKTEFKT-----RDLVQDLDRLVRGSVEPVRDLVSGF---EIAPGALGALL 265
V L + T R++++ + +GS E V G ++A ALG L+
Sbjct: 468 STAVQLAPVPQVMGDTDAAGVRNIIES-NGYFKGSSESWNCAVDGLNECDVALSALGELI 526
Query: 266 SY-AEL-LSDESNYGNYYIRKYSL-DSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNR 322
++ + L L D +G+ + Y + +R+D M L + + D + +L+ ++
Sbjct: 527 NHLSRLKLEDVLKHGDIF--PYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLDN 584
Query: 323 TCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMH 382
C + GKRLL W+ PL DV IN RLD+V+ F ++ Q Q+L ++ D+ERL+
Sbjct: 585 -CVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLERLLG 643
Query: 383 NLE 385
++
Sbjct: 644 RIK 646
Score = 38 (18.4 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 365 QDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKE 424
+D+ KR+ +E N E + Q + KL L I+S+++ +L+ +
Sbjct: 603 KDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLERLLGRIKSSVRSSASVLPALLGK 662
Query: 425 RYL 427
+ L
Sbjct: 663 KVL 665
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 571 (206.1 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
Identities = 143/404 (35%), Positives = 227/404 (56%)
Query: 455 LENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHV 514
+++G+ +I Y+ L + ++ + I L K+ + D+ K+LK+ FG+
Sbjct: 410 IKDGD-IIKDGYNDKLDQYRYVSKNGKTWIAELEKR---ERDITGIKSLKIGYNRIFGYY 465
Query: 515 FRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNR 574
+TK + + ++ +T + +F +LK+ + E+ + +L
Sbjct: 466 IEVTKANLGALPEG---RYERKQTLANAERFITDELKEKETLILEAEEKIVQLEYDLFTA 522
Query: 575 VIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHP 634
+ + F + LA ++SELDVL SFA ++ + +P + +I ++ RHP
Sbjct: 523 LREEVKVFIPKLQHLAKVISELDVLQSFATVSEE--EQFVKPVLTTKR--EIFIKDGRHP 578
Query: 635 CVE-AQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR 693
VE + ++PNDC + F +ITGPNM GKST++RQ+ + +M+Q+G FVP
Sbjct: 579 VVEKVLNGKLYVPNDCIMPENMDVF-LITGPNMSGKSTYMRQLALVTVMSQIGCFVPATE 637
Query: 694 ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDG 753
A + V D IF R+GA D + G STFM EMLE + + A++RSLI+ DE+GRGTSTYDG
Sbjct: 638 AVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDG 697
Query: 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTS 813
LA AI EH+ ++I A TLF+TH+HELT L E + Q+ N HVSA I+
Sbjct: 698 MALAQAIIEHIHDQIGAKTLFSTHYHELTVL------EDSLDQL---KNVHVSA-IEENG 747
Query: 814 RKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
K+ L+K++ GA D+S+GIHVA+ A P+S++ A+E A+LE
Sbjct: 748 -KVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLE 790
Score = 281 (104.0 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 89/347 (25%), Positives = 173/347 (49%)
Query: 260 ALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGL 319
A+G L +Y S + Y + +M++D + R L + E+ K SL L
Sbjct: 223 AVGRLFNYVIRTQKRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLLWL 282
Query: 320 MNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIER 379
+++T TA MG R+L W+++PL+ I RL++V+ FV+D LR+DL++ LK + D+ER
Sbjct: 283 LDKTKTA-MGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLER 341
Query: 380 LMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHL 439
L + + +++L +S +++P I A+ + +++ + + DP ESLT+ L
Sbjct: 342 LAGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQG-ADPCESLTE--LL 398
Query: 440 NKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPV 499
+ I + + L +++G+ +I Y+ L + ++ + I L K+ + D+
Sbjct: 399 GRSI---QENPPLS-IKDGD-IIKDGYNDKLDQYRYVSKNGKTWIAELEKR---ERDITG 450
Query: 500 DKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQK 559
K+LK+ FG+ +TK + + ++ +T + +F +LK+ +
Sbjct: 451 IKSLKIGYNRIFGYYIEVTKANLGALPEG---RYERKQTLANAERFITDELKEKETLILE 507
Query: 560 VLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
E+ + +L + + F + LA ++SELDVL SFA ++
Sbjct: 508 AEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVS 554
Score = 42 (19.8 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
Identities = 19/107 (17%), Positives = 49/107 (45%)
Query: 343 DVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSI 402
++N++ L + ++ D TA+ + L +K +S +L+ + + +++ + S
Sbjct: 184 ELNKLTETLKMTISYEDATAIPEGLEHLVKNVSQA-KLIKAVGRL---FNYVIRTQKRS- 238
Query: 403 RLPYIRSALQQYEGQFSSLI--KERYLDPLESLTDDDHLNKFIALVE 447
L +++ Y QF + +R L+ E+L + + L++
Sbjct: 239 -LDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKEKTGSLLWLLD 284
Score = 40 (19.1 bits), Expect = 3.0e-52, Sum P(2) = 3.0e-52
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 194 LLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDR 238
L P E +++ + D ++ + LTE +T+ KT L+ LD+
Sbjct: 242 LQPVEIYYTNQFMKI-DVHSKRNLELTETLRTKEKTGSLLWLLDK 285
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 573 (206.8 bits), Expect = 3.2e-52, P = 3.2e-52
Identities = 194/757 (25%), Positives = 345/757 (45%)
Query: 130 FANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALG 189
F N D+ IV + N G ++D L + EF DDS T +++ + +
Sbjct: 447 FYNETQLDSSTIVQ-----KLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVR 501
Query: 190 CKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRD--LVQDLDRLVRGSVEPV 247
E ++ + + K ++ + + EF D + + + E
Sbjct: 502 PMEVVMERNNLSTLANKIVKFNSAPNAIFNEVKAGEEFYDCDKTYAEIISSEYFSTEEDW 561
Query: 248 RDLV-----SGFEIAPGALGALLSYAELLS-DESNYGNYYIRKYSL---DSYMRLDSAAM 298
+++ +G ++ A G LL Y + L D++ I++Y M LD +
Sbjct: 562 PEVLKSYYDTGKKVGFSAFGGLLYYLKWLKLDKNLISMKNIKEYDFVKSQHSMVLDGITL 621
Query: 299 RALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV 358
+ L + + D + +LF L NR T MGKR++ WL PLL N+I +RLD V + +
Sbjct: 622 QNLEIFSNSFDGSDKGTLFKLFNRAITP-MGKRMMKKWLMHPLLRKNDIESRLDSVDSLL 680
Query: 359 DDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE--G 416
D LR+ L ++ D+ER++ + R ++ K+ + + ++ +L+ + G
Sbjct: 681 QDITLREQLEITFSKLPDLERMLARIHSRTIKVKDFEKVITAFETIIELQDSLKNNDLKG 740
Query: 417 QFSSLIK---ERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSAL 473
S I E ++ ++S T+ K I ++ + Q G +D + +
Sbjct: 741 DVSKYISSFPEGLVEAVKSWTNAFERQKAI---NENIIVPQ--RG---FDIEFDKSMDRI 792
Query: 474 KNEQESLERQIHSLHKQ-TASDLDLPVDKALKLDKGTQFGHVFRITKKEEP-KIRKKLTT 531
+ ++ L + + KQ S++ D G + ++ I E P K + +
Sbjct: 793 QELEDELMEILMTYRKQFKCSNIQYK-------DSGKE---IYTI---EIPISATKNVPS 839
Query: 532 QFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTA-VTFSEIFKSLA 590
++ + K ++ + +++ L + E +K +++L NR+ Q ++ I+
Sbjct: 840 NWVQMAANKTYKRYYSDEVRALARSMAEAKEIHKTLEEDLKNRLCQKFDAHYNTIWMPTI 899
Query: 591 TMLSELDVLLSFADLASSCPTPYTRPDI--------NPPDVGDIILEGSRHPCVE--AQD 640
+S +D LL+ + P RP I N G + + RHPC A
Sbjct: 900 QAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNGFLKFKSLRHPCFNLGATT 959
Query: 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRD 700
+FIPND +L + + ++TG N GKST +R + ++MAQ+G +VPC+ A ++ D
Sbjct: 960 AKDFIPNDIELGKEQPRLGLLTGANAAGKSTILRMACIAVIMAQMGCYVPCESAVLTPID 1019
Query: 701 CIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAI 760
I R+GA D ++G STF E+ ET IL AT+RSL+++DELGRG S+ DGF +A ++
Sbjct: 1020 RIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGSSSDGFAIAESV 1079
Query: 761 CEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLY 820
H+ I++ FATH+ L A+ F K V +S +D +R +T LY
Sbjct: 1080 LHHVATHIQSLGFFATHYGTL-------ASSF--KHHPQVRPLKMSILVDEATRNVTFLY 1130
Query: 821 KVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
K+ G + SFG+HVA + ++ A+ A LE
Sbjct: 1131 KMLEGQSEGSFGMHVASMCGISKEIIDNAQIAADNLE 1167
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 577 (208.2 bits), Expect = 7.0e-52, Sum P(2) = 7.0e-52
Identities = 166/580 (28%), Positives = 298/580 (51%)
Query: 290 YMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINA 349
+MR++ +R L +++++TD SL +++ T T+ G+R L W+ QPLL + EINA
Sbjct: 492 FMRINGTTLRNLEMVQNQTDMKTKGSLLWVLDHTKTS-FGRRKLKNWVTQPLLKLREINA 550
Query: 350 RLDIVQAFV-DDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIR 408
RLD V + ++++ + + L+++ D+ER + ++ ++ Q+ + +S +L +
Sbjct: 551 RLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLIVKSLCQL---K 607
Query: 409 SALQQYEGQFSSLIKERYLDPL--ESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSY 466
S LQ +S ++ L L E L+ +H K + V D+ E +
Sbjct: 608 SELQALMPAVNSHVQSDLLRALIVELLSPVEHYLKVLNGPAAKVG-DKTE----LFKDLS 662
Query: 467 DTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIR 526
D L +K + ++ IHS+ + + K L T G F I K
Sbjct: 663 DFPL--IKKRKNEIQEVIHSIQMRLQEFRKIL--KLPSLQYVTVSGQEFMIEIKNSAV-- 716
Query: 527 KKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYK-NCQKELVNRVIQTAVTFSEI 585
+ ++ + + K +F + + + ++ E+ +C E + + + +
Sbjct: 717 SCIPADWVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCNAEWLGFLENFGEHYHTL 776
Query: 586 FKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEA----QDW 641
K++ L+ +D + S A +A Y RP + + II++ RHP ++ QD
Sbjct: 777 CKAV-DHLATVDCIFSLAKVAKQ--GNYCRPTLQ--EEKKIIIKNGRHPMIDVLLGEQD- 830
Query: 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDC 701
F+PN L + IITGPNMGGKS++I+QV + +MAQ+GS+VP + A+I + D
Sbjct: 831 -QFVPNSTSLSDSER-VMIITGPNMGGKSSYIKQVTLVTIMAQIGSYVPAEEATIGIVDG 888
Query: 702 IFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAIC 761
IF R+GA D +G STFM+++ +TA I++ A+ +SL+I+DELGRGTST+DG +A+A
Sbjct: 889 IFTRMGAADNIYKGRSTFMEQLTDTAEIIRRASPQSLVILDELGRGTSTHDGIAIAYATL 948
Query: 762 EHLVEEIRAPTLFATHFH---ELTALAHENANEFNTKQMVGV-ANYHVSAHIDSTSRKLT 817
E+ + ++++ TLF TH+ EL E ++ +V + S ++ +T
Sbjct: 949 EYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDESKQDSGDMEQMPDSVT 1008
Query: 818 MLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
LY++ G +S+G++VA+ A+ P V+ A K+ ELE
Sbjct: 1009 FLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELE 1048
Score = 38 (18.4 bits), Expect = 7.0e-52, Sum P(2) = 7.0e-52
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 294 DSAAMRALNVL---ESKTDANKNFSLFG 318
D RA N + +SK+ AN+ S FG
Sbjct: 137 DITLQRAKNAVLSEDSKSQANQKDSQFG 164
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 509 (184.2 bits), Expect = 2.7e-51, Sum P(3) = 2.7e-51
Identities = 157/487 (32%), Positives = 244/487 (50%)
Query: 391 LQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSV 450
++++V ++S I I + EG+F L E L+ ++ D + K L+
Sbjct: 803 MEEVVDNFKSKILKQVITLQTKNPEGRFPDLTVE--LNRWDTAFDHEKARK-TGLITPKA 859
Query: 451 DLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQ 510
D S YD L+ ++ ++SL + L KQ + + + G
Sbjct: 860 GFD----------SDYDQALADIRENEQSL---LEYLEKQRSR---IGCRTIVYWGIGRN 903
Query: 511 FGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVK--FTNTKLKKLGDQYQKVLEEYKNCQ 568
+ I E I + L ++ + T+K G K +T T KKL + EE ++
Sbjct: 904 -RYQLEIP---ENFITRNLPEEYELKSTKK-GCKRYWTKTIEKKLANLINA--EERRDVS 956
Query: 569 -KELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGD-- 625
K+ + R+ + ++S ++ LDVLL A+ + P RP I P+ G
Sbjct: 957 LKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPP 1016
Query: 626 -IILEGSRHPCVEAQDWVN-FIPND----CKLIR---GKSWFQIITGPNMGGKSTFIRQV 676
+ L GSRHPC+ + + FIPND C+ GK++ ++TGPNMGGKST +RQ
Sbjct: 1017 FLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQA 1076
Query: 677 GVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736
G+ +MAQ+G +VP + ++ D +F R+GA D + G STF E+ ETASIL AT
Sbjct: 1077 GLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAH 1136
Query: 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQ 796
SL+++DELGRGT+T+DG +A A+ + L E I+ TLF+TH+H L E+ ++ N
Sbjct: 1137 SLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLV----EDYSQ-NVAV 1191
Query: 797 MVGVANYHVSAHIDSTSRK-LTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAE 855
+G V + S++ +T LYK GAC +S+G + A AN PE V+ KA E
Sbjct: 1192 RLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKARE 1251
Query: 856 LEDFTPS 862
E T S
Sbjct: 1252 FEKMTQS 1258
Score = 118 (46.6 bits), Expect = 2.7e-51, Sum P(3) = 2.7e-51
Identities = 44/161 (27%), Positives = 76/161 (47%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD+ + L + + T+ + +L ++ TC GKRLL WL PL IN R
Sbjct: 661 MVLDAVTLSNLEIFMNGTNGSTEGTLLEKID-TCHTPFGKRLLKQWLCAPLCSPYAINDR 719
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSA 410
LD ++ + D+ LK++ D+ERL+ + + L+ Q+ P R+
Sbjct: 720 LDAIEDLMVVPDKISDVADLLKKLPDLERLLSKIHNVGSPLKS-----QNH---PDSRAI 771
Query: 411 LQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
+ + E +S K++ +D L +L + K I ++E VD
Sbjct: 772 MYE-ETTYS---KKKIIDFLSALEGFKVICKIIEIMEEVVD 808
Score = 37 (18.1 bits), Expect = 2.7e-51, Sum P(3) = 2.7e-51
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
G+ +VD + + +F DD H + + LVA
Sbjct: 485 GVCFVDTSLGKFFIGQFSDDRHCSRFRT-LVA 515
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 500 (181.1 bits), Expect = 7.4e-51, Sum P(2) = 7.4e-51
Identities = 130/353 (36%), Positives = 195/353 (55%)
Query: 525 IRKKLTTQFIVLETRKDGVK--FTNTKLKKLGDQYQKVLEEYKNCQ-KELVNRVIQTAVT 581
I + L ++ + T+K G K +T T KKLG+ EE ++ K+ + R+
Sbjct: 985 ITRNLPEEYELKSTKK-GCKRYWTKTIEKKLGNLINA--EERRDASLKDCMRRLFYNFDK 1041
Query: 582 FSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPP--DVGDII-LEGSRHPCVEA 638
+ +++ ++ LDVLL + + P RP I P D + L+GSRHPC+
Sbjct: 1042 NYKDWQAAVECIAVLDVLLCLTNYSRGGDGPMCRPIILLPEEDTPPFLDLKGSRHPCITK 1101
Query: 639 QDWVN-FIPND----CKLIR---GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVP 690
+ + FIPND C+ GK++ ++TGPNMGGKST +RQ G+ +MAQ+G +VP
Sbjct: 1102 TFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAIMAQMGCYVP 1161
Query: 691 CDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTST 750
+ ++ D +F R+GA D + G STF E+ ETASIL AT SL+++DELGRGT+T
Sbjct: 1162 AEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTAT 1221
Query: 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHID 810
+DG +A A+ + L E I+ TLF+TH+H L E+ ++ N +G V +
Sbjct: 1222 FDGTAIANAVVKELAENIKCRTLFSTHYHSLV----EDYSQ-NVAVRLGHMACMVENECE 1276
Query: 811 STSRK-LTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862
S++ +T LYK GAC +S+G + A AN PE V+ KA E E T S
Sbjct: 1277 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQS 1329
Score = 116 (45.9 bits), Expect = 7.4e-51, Sum P(2) = 7.4e-51
Identities = 42/161 (26%), Positives = 78/161 (48%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD+ + L + + T+ + +L ++ TC GKRLL WL PL + + IN R
Sbjct: 732 MVLDAVTLNNLEIFLNGTNGSTEGTLLEKID-TCHTPFGKRLLKQWLCAPLCNPHAINDR 790
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSA 410
LD ++ + ++ LK++ D+ERL+ + + L+ Q+ P R+
Sbjct: 791 LDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKS-----QNH---PDSRAI 842
Query: 411 LQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
+ + E +S K++ +D L +L + K I ++E +D
Sbjct: 843 MYE-ETTYS---KKKIIDFLSALEGFKVICKIIGIMEEVID 879
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 477 (173.0 bits), Expect = 9.5e-51, Sum P(3) = 9.5e-51
Identities = 119/351 (33%), Positives = 188/351 (53%)
Query: 522 EPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVT 581
E + L ++ + TRK ++ +++K+ + E K+ + R+
Sbjct: 964 ETATSRNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDAALKDCMRRLFYNFDK 1023
Query: 582 FSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDIN-PPDVGDIILE--GSRHPCVEA 638
S+ +++ ++ LDVL+S A+ + P RP I P D LE +RHPC+
Sbjct: 1024 NSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNARHPCITK 1083
Query: 639 QDWVN-FIPNDC----KLIRGKSWFQ--IITGPNMGGKSTFIRQVGVNILMAQVGSFVPC 691
+ + FIPND K G S ++TGPNMGGKST +RQ G+ ++MAQ+G +VP
Sbjct: 1084 TFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPA 1143
Query: 692 DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTY 751
+ ++ D +F R+GA D + G STF E+ ET+SIL+ AT+ SL+++DELGRGT+T+
Sbjct: 1144 EVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATF 1203
Query: 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDS 811
DG +A A+ L E I+ TLF+TH+H L E+ + ++ +A + D
Sbjct: 1204 DGTAIASAVVRELAENIKCRTLFSTHYHSLV----EDYSGSAAVRLGHMACMVENESEDP 1259
Query: 812 TSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862
+ +T LYK GAC +S+G + A A+ PE ++ KA E E T S
Sbjct: 1260 SQETITFLYKFIEGACPKSYGFNAARLADIPEEIIQKGHRKAKEFEKKTMS 1310
Score = 149 (57.5 bits), Expect = 9.5e-51, Sum P(3) = 9.5e-51
Identities = 36/106 (33%), Positives = 56/106 (52%)
Query: 279 NYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLK 338
N++ R D M LD + L VL++ T+ +L ++ CT GKRLL WL
Sbjct: 705 NFFART---DRRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTP-FGKRLLKQWLC 760
Query: 339 QPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNL 384
PL + IN RLD V+ + A ++ +HLK++ D+ERL+ +
Sbjct: 761 APLCNPTSINDRLDAVEDLLAVPAKLTEITEHLKKLPDLERLLSKI 806
Score = 37 (18.1 bits), Expect = 9.5e-51, Sum P(3) = 9.5e-51
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC 215
G+ +VD + + +F DD H + + + + L + K L+ +L C
Sbjct: 538 GVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDTQKILKGSLISC 597
Score = 37 (18.1 bits), Expect = 5.0e-40, Sum P(2) = 5.0e-40
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 78 VSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPG 120
+ V + +T++ RTD + L + N ++++GT G
Sbjct: 691 IPVDADNAKTVSSSNFFARTDRRMVLDGVTLMNLEVLQNGTNG 733
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 557 (201.1 bits), Expect = 1.0e-50, P = 1.0e-50
Identities = 180/617 (29%), Positives = 309/617 (50%)
Query: 290 YMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINA 349
+M LD ++++L++ D K SLF L++ T T+ G R+L W+ +PL+DV++I
Sbjct: 417 HMLLDPNSLQSLDIFTH--DGGKG-SLFWLLDHTRTS-FGLRMLREWILKPLVDVHQIEE 472
Query: 350 RLDIVQAF---VDDTALRQDLRQHLKRISDI----ERLMHNLEKRRAG---LQQIVKLYQ 399
RLD ++ ++++ + L Q L D+ R+M+ R+ L+QI
Sbjct: 473 RLDAIECITSEINNSIFFESLNQMLNHTPDLLRTLNRIMYGTTSRKEVYFYLKQITSFVD 532
Query: 400 S-SIRLPYIRSALQQYEGQFS--SLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLE 456
+ Y+ + +G+ S + R L L L F+ ++ S +++
Sbjct: 533 HFKMHQSYLSEHFKSSDGRIGKQSPLLFRLFSELNELLSTTQLPHFLTMINVSAVMEKNS 592
Query: 457 NGEYMIS---SSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGH 513
+ + M ++YD +K ++ES S+ Q +L + K LK
Sbjct: 593 DKQVMDFFNLNNYDCSEGIIKIQRES-----ESVRSQLKEEL-AEIRKYLKRPYLNFRDE 646
Query: 514 VFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGD--QYQK--VLEEYKNCQK 569
V + + + +I K L +I + K +FT + +KL +Y K ++ E + K
Sbjct: 647 VDYLIEVKNSQI-KDLPDDWIKVNNTKMVSRFTTPRTQKLTQKLEYYKDLLIRESELQYK 705
Query: 570 ELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPD-INPPDVGDIIL 628
E +N++ TA ++E+ K + L++ D +LS A A+SC Y RP +N II
Sbjct: 706 EFLNKI--TA-EYTELRK-ITLNLAQYDCILSLA--ATSCNVNYVRPTFVNGQQA--IIA 757
Query: 629 EGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF 688
+ +R+P +E+ D V+++PND + IITGPNMGGKS++IRQV + +MAQ+GSF
Sbjct: 758 KNARNPIIESLD-VHYVPNDIMMSPENGKINIITGPNMGGKSSYIRQVALLTIMAQIGSF 816
Query: 689 VPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGT 748
VP + +S+ + + R+GA D + G STF EML+ ILK RSL+++DE+GRGT
Sbjct: 817 VPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGT 876
Query: 749 STYDGFGLAWAICEHLVEEIRAPT-LFATHFHELTALAHENANEFNTKQMVGVANYHVS- 806
T+DG +++A+ ++ E P LF THF L + K + + NYH+
Sbjct: 877 GTHDGIAISYALIKYFSELSDCPLILFTTHFPMLGEI----------KSPL-IRNYHMDY 925
Query: 807 AHIDSTSR---KLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSA 863
T + LYK++ G S+G++VA+ A + ++ A + EL +
Sbjct: 926 VEEQKTGEDWMSVIFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELRKES--- 982
Query: 864 VISDDAKIEVGSKRKRI 880
I++DA +++ S KRI
Sbjct: 983 -INEDA-LKLFSSLKRI 997
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 477 (173.0 bits), Expect = 1.0e-50, Sum P(3) = 1.0e-50
Identities = 119/351 (33%), Positives = 188/351 (53%)
Query: 522 EPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVT 581
E + L ++ + TRK ++ +++K+ + E K+ + R+
Sbjct: 980 ETATSRNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDAALKDCMRRLFYNFDK 1039
Query: 582 FSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDIN-PPDVGDIILE--GSRHPCVEA 638
S+ +++ ++ LDVL+S A+ + P RP I P D LE +RHPC+
Sbjct: 1040 NSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNARHPCITK 1099
Query: 639 QDWVN-FIPNDC----KLIRGKSWFQ--IITGPNMGGKSTFIRQVGVNILMAQVGSFVPC 691
+ + FIPND K G S ++TGPNMGGKST +RQ G+ ++MAQ+G +VP
Sbjct: 1100 TFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPA 1159
Query: 692 DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTY 751
+ ++ D +F R+GA D + G STF E+ ET+SIL+ AT+ SL+++DELGRGT+T+
Sbjct: 1160 EVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATF 1219
Query: 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDS 811
DG +A A+ L E I+ TLF+TH+H L E+ + ++ +A + D
Sbjct: 1220 DGTAIASAVVRELAENIKCRTLFSTHYHSLV----EDYSGSAAVRLGHMACMVENESEDP 1275
Query: 812 TSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862
+ +T LYK GAC +S+G + A A+ PE ++ KA E E T S
Sbjct: 1276 SQETITFLYKFIEGACPKSYGFNAARLADIPEEIIQKGHRKAKEFEKKTMS 1326
Score = 149 (57.5 bits), Expect = 1.0e-50, Sum P(3) = 1.0e-50
Identities = 36/106 (33%), Positives = 56/106 (52%)
Query: 279 NYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLK 338
N++ R D M LD + L VL++ T+ +L ++ CT GKRLL WL
Sbjct: 721 NFFART---DRRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTP-FGKRLLKQWLC 776
Query: 339 QPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNL 384
PL + IN RLD V+ + A ++ +HLK++ D+ERL+ +
Sbjct: 777 APLCNPTSINDRLDAVEDLLAVPAKLTEITEHLKKLPDLERLLSKI 822
Score = 37 (18.1 bits), Expect = 1.0e-50, Sum P(3) = 1.0e-50
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC 215
G+ +VD + + +F DD H + + + + L + K L+ +L C
Sbjct: 554 GVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDTQKILKGSLISC 613
Score = 37 (18.1 bits), Expect = 5.2e-40, Sum P(2) = 5.2e-40
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 78 VSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPG 120
+ V + +T++ RTD + L + N ++++GT G
Sbjct: 707 IPVDADNAKTVSSSNFFARTDRRMVLDGVTLMNLEVLQNGTNG 749
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 492 (178.3 bits), Expect = 1.7e-50, Sum P(4) = 1.7e-50
Identities = 142/426 (33%), Positives = 219/426 (51%)
Query: 507 KGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKN 566
+ +F V IT E + K+ ++ + + K +++ ++ D+ E
Sbjct: 662 RNLEFLQVSGITHLIELPVDSKVPMNWVKVNSTKKTIRYHPPEIVAGLDELALATEHLAI 721
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPD-INPPDVGD 625
+ + +++ + FK+ L+ LD L S + L+ + Y RP+ ++ + +
Sbjct: 722 VNRASWDSFLKSFSRYYTDFKAAVQALAALDCLHSLSTLSRN--KNYVRPEFVDDCEPVE 779
Query: 626 IILEGSRHPCVEA--QDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA 683
I ++ RHP +E QD NF+PND L + QIITGPNMGGKS +IRQV + +MA
Sbjct: 780 INIQSGRHPVLETILQD--NFVPNDTILHAEGEYCQIITGPNMGGKSCYIRQVALISIMA 837
Query: 684 QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDE 743
QVGSFVP A + V D +F R+GA D G STF++E+ E + I++ + RSL+I+DE
Sbjct: 838 QVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDE 897
Query: 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY 803
LGRGTST+DG +A+A +HL+ E R LF TH+ E+ E +N F V Y
Sbjct: 898 LGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPEIA----EISNGFPGS----VGTY 949
Query: 804 HVS---AHIDSTSRK---LTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
HVS D S +T LYK+ G C +SFG VA+ A P S + A AA+LE
Sbjct: 950 HVSYLTLQKDKGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLE 1009
Query: 858 DFTPSAVISDDAKIEVGSKRKRISDP--NDMSRGAARAHQFLKE-FSDMP--LETMDLKE 912
A++ + R+ +P ++ RGA + L + F+D+ L D +
Sbjct: 1010 -----------AEVRARERNTRMGEPEGHEEPRGAEESISALGDLFADLKFALSEEDPWK 1058
Query: 913 ALERVK 918
A E +K
Sbjct: 1059 AFEFLK 1064
Score = 124 (48.7 bits), Expect = 1.7e-50, Sum P(4) = 1.7e-50
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 277 YGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMW 336
Y R S ++ M L + ++ L V+++ +D +++ SLF MN T T G RLL W
Sbjct: 406 YQGASFRSLSSNTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTV-YGSRLLRHW 464
Query: 337 LKQPLLDVNEINARLDIV 354
+ PL D N I+ARLD V
Sbjct: 465 VTHPLCDRNLISARLDAV 482
Score = 40 (19.1 bits), Expect = 1.7e-50, Sum P(4) = 1.7e-50
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 460 YMISSSYDTGLSALKNEQESLERQIHSLHKQT 491
Y++ SS T +S + Q + R H K T
Sbjct: 516 YLVLSSVLTAMSRSSDIQRGITRIFHRTAKAT 547
Score = 40 (19.1 bits), Expect = 5.2e-42, Sum P(3) = 5.2e-42
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 59 YHTTTALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGS 107
+ + ++ ++ ++ L + V KN + L +HTL +Y GS
Sbjct: 411 FRSLSSNTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVY-GS 458
Score = 38 (18.4 bits), Expect = 1.7e-50, Sum P(4) = 1.7e-50
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 254 FEIAPGALGALLSYAELLSDESN 276
F++ G +G +S E++ +E N
Sbjct: 258 FDVRVGVVGVEISTGEVVYEEFN 280
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 556 (200.8 bits), Expect = 2.0e-50, P = 2.0e-50
Identities = 172/600 (28%), Positives = 291/600 (48%)
Query: 281 YIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQP 340
Y + +S S+M ++ + +L V + TD + SL +++T T G+R+L WL +P
Sbjct: 532 YFQSFSTRSHMCINGTTLESLEVYRNSTDHTEKGSLLWALDKTRTR-FGQRMLRKWLGRP 590
Query: 341 LLDVNEINARLDIVQAFVDDTALRQ--DLRQHLKRI-SDIERLMHNLEKRRAGLQQIVKL 397
LLD ++ R+ V+ ++ Q L++ L I +D+ER + + R +++ +
Sbjct: 591 LLDKERLDDRVAAVEELFENRNGPQVEKLQKLLSSIKTDLERSLIRIFYGRCTRPELLAV 650
Query: 398 YQS--SIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQL 455
Q+ I + YI G S+L+ E L SL + + + ++ D
Sbjct: 651 LQTLQRIAVEYIVVKEPSQTGFKSNLVSEA----LASLP---RIREIVVSYLNRINPDAA 703
Query: 456 ENG---EYMISSSYDTGLSALKNEQESLERQIHSLHKQT---ASDLDLPVDKALKLDKGT 509
E+ S DTG ++E + + I ++ ++ SD + + +D T
Sbjct: 704 RKNDKYEFFRDESDDTGDDG-EDEITTQKMSIAAVEQELDAHRSDAAATLGRKKAVDYVT 762
Query: 510 QFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKL---GDQYQKVLEEYKN 566
G + I + +IRK + + T+K +F ++ +L DQ+++ L
Sbjct: 763 VAGIEYLI-EVPNTEIRKVPASWAKISGTKKLS-RFHTPEVVRLIAERDQHKEALAAA-- 818
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLAS--SCPTPYTRPDINPPDVG 624
C + A + + + + L+ LD LLSFA +A+ P PD +PP +
Sbjct: 819 CDAAFKAMLASIADQYQPL-RDAVSSLATLDCLLSFAQVAALPGYSKPIILPDSHPPTIA 877
Query: 625 DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ 684
+ G RHP E +IP L ++TGPNMGGKS+F+R + + +L+AQ
Sbjct: 878 ---VAGGRHPIAEHTLPSGYIPFSTTLSSPAPLAHLVTGPNMGGKSSFVRALALLVLLAQ 934
Query: 685 VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDEL 744
VGSFVP D +++ D I+ R+GA D G STFM E+ ETA+IL+ AT RSL+++DEL
Sbjct: 935 VGSFVPADSLRLTLSDAIYTRMGASDNLFAGESTFMVEVGETAAILRTATPRSLVLLDEL 994
Query: 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE-NANEFNTKQMVGVANY 803
GRGTST+DG +A A+ +H+V R TLF TH+ L +A M ++
Sbjct: 995 GRGTSTHDGAAIAHAVLDHVVRNTRCLTLFITHYQSLARVAEGLGTGLVRNVHMRFTSSR 1054
Query: 804 HVSA-----HIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858
+ D +T LY+V G +S+G++VA A P ++ +A K+ ++E+
Sbjct: 1055 DDNDDGDKDQDDDVGENITFLYEVADGVAHRSYGLNVARLARIPRKILEVAARKSRKMEE 1114
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 500 (181.1 bits), Expect = 3.1e-50, Sum P(3) = 3.1e-50
Identities = 157/488 (32%), Positives = 244/488 (50%)
Query: 391 LQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSV 450
++++V ++S I I + EG+F L E L+ ++ D + K L+
Sbjct: 793 MEEVVDNFKSKILKQVITLQTKNPEGRFPDLTVE--LNRWDTAFDHEKARK-TGLITPKA 849
Query: 451 DLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQ 510
D S YD L+ ++ ++SL + L KQ + + + G
Sbjct: 850 GFD----------SDYDQALADIRENEQSL---LEYLEKQRSR---IGCRTIVYWGIGRN 893
Query: 511 FGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVK--FTNTKLKKLGDQYQKVLEEYKNCQ 568
+ I E I + L ++ + T+K G K +T T KKL + EE ++
Sbjct: 894 -RYQLEIP---ENFITRNLPEEYELKSTKK-GCKRYWTKTIEKKLANLINA--EERRDVS 946
Query: 569 -KELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGD-- 625
K+ + R+ + ++S ++ LDVLL A+ + P RP I P+ G
Sbjct: 947 LKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPP 1006
Query: 626 -IILEGSRHPCVEAQDWVN-FIPND----CKLIR---GKSWFQIITGPNMGGKSTFIRQV 676
+ L GSRHPC+ + + FIPND C+ GK++ ++TGPNMGGKST +RQ
Sbjct: 1007 FLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQA 1066
Query: 677 GVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736
G+ +MAQ+G +VP + ++ D +F R+GA D + G STF E+ ETASIL AT
Sbjct: 1067 GLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAH 1126
Query: 737 SLIIIDEL-GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTK 795
SL+++DEL GRGT+T+DG +A A+ + L E I+ TLF+TH+H L E+ ++ N
Sbjct: 1127 SLVLVDELVGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLV----EDYSQ-NVA 1181
Query: 796 QMVGVANYHVSAHIDSTSRK-LTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAA 854
+G V + S++ +T LYK GAC +S+G + A AN PE V+ KA
Sbjct: 1182 VRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAR 1241
Query: 855 ELEDFTPS 862
E E T S
Sbjct: 1242 EFEKMTQS 1249
Score = 118 (46.6 bits), Expect = 3.1e-50, Sum P(3) = 3.1e-50
Identities = 44/161 (27%), Positives = 76/161 (47%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD+ + L + + T+ + +L ++ TC GKRLL WL PL IN R
Sbjct: 651 MVLDAVTLSNLEIFMNGTNGSTEGTLLEKID-TCHTPFGKRLLKQWLCAPLCSPYAINDR 709
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSA 410
LD ++ + D+ LK++ D+ERL+ + + L+ Q+ P R+
Sbjct: 710 LDAIEDLMVVPDKISDVADLLKKLPDLERLLSKIHNVGSPLKS-----QNH---PDSRAI 761
Query: 411 LQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
+ + E +S K++ +D L +L + K I ++E VD
Sbjct: 762 MYE-ETTYS---KKKIIDFLSALEGFKVICKIIEIMEEVVD 798
Score = 37 (18.1 bits), Expect = 3.1e-50, Sum P(3) = 3.1e-50
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
G+ +VD + + +F DD H + + LVA
Sbjct: 475 GVCFVDTSLGKFFIGQFSDDRHCSRFRT-LVA 505
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 496 (179.7 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 128/341 (37%), Positives = 189/341 (55%)
Query: 536 LETRKDGVK--FTNTKLKKLGDQYQKVLEEYKNCQ-KELVNRVIQTAVTFSEIFKSLATM 592
L++ K G K +T T KKL + EE ++ K+ + R+ + ++S
Sbjct: 694 LKSTKKGCKRYWTKTIEKKLANLINA--EERRDVSLKDCMRRLFYNFDKNYKDWQSAVEC 751
Query: 593 LSELDVLLSFADLASSCPTPYTRPDIN-PPDVGDII-LEGSRHPCVEAQDWVN-FIPND- 648
++ LDVLL A+ + P RP I P D + L+GSRHPC+ + + FIPND
Sbjct: 752 IAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDI 811
Query: 649 ---CK---LIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCI 702
C+ GK++ ++TGPNMGGKST +RQ G+ +MAQ+G +VP + ++ D +
Sbjct: 812 LIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRV 871
Query: 703 FARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICE 762
F R+GA D + G STF E+ ETASIL AT SL+++DELGRGT+T+DG +A A+ +
Sbjct: 872 FTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVK 931
Query: 763 HLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK-LTMLYK 821
L E I+ TLF+TH+H L E+ ++ N +G V + S++ +T LYK
Sbjct: 932 ELAETIKCRTLFSTHYHSLV----EDYSQ-NVAVRLGHMACMVENECEDPSQETITFLYK 986
Query: 822 VEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862
GAC +S+G + A AN PE V+ KA E E S
Sbjct: 987 FIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQS 1027
Score = 111 (44.1 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD+ + L + + T+ + +L ++ TC GKRLL WL PL + IN R
Sbjct: 431 MVLDAVTLNNLEIFLNGTNGSTEGTLLERVD-TCHTPFGKRLLKQWLCAPLCNHYAINDR 489
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLM---HNL 384
LD ++ + ++ + LK++ D+ERL+ HN+
Sbjct: 490 LDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNV 526
Score = 42 (19.8 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC 215
G+ +VD + + +F DD H + + LVA +L + S E KT+ + C
Sbjct: 255 GVCFVDTSLGKFFIGQFSDDRHCSRFRT-LVAHYPPVQVLFEKGNLSKETKTILKSSLSC 313
Query: 216 GV 217
+
Sbjct: 314 SL 315
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 497 (180.0 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 126/341 (36%), Positives = 190/341 (55%)
Query: 536 LETRKDGVK--FTNTKLKKLGDQYQKVLEEYKNCQ-KELVNRVIQTAVTFSEIFKSLATM 592
L++ K G K +T T KKL + EE ++ K+ + R+ + ++S
Sbjct: 993 LKSTKKGCKRYWTKTIEKKLANLINA--EERRDTSLKDCMRRLFCNFDKNHKDWQSAVEC 1050
Query: 593 LSELDVLLSFADLASSCPTPYTRPDINPP--DVGDII-LEGSRHPCVEAQDWVN-FIPND 648
++ LDVLL A+ + P RP+I P D + +GSRHPC+ + + FIPND
Sbjct: 1051 IAVLDVLLCLANYSQGGDGPMCRPEIVLPGEDTHPFLEFKGSRHPCITKTFFGDDFIPND 1110
Query: 649 ----CKLI---RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDC 701
C+ GK++ ++TGPNMGGKST IRQ G+ +MAQ+G +VP ++ ++ D
Sbjct: 1111 ILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQLGCYVPAEKCRLTPVDR 1170
Query: 702 IFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAIC 761
+F R+GA D + G STF E+ ETASIL+ AT SL+++DELGRGT+T+DG +A A+
Sbjct: 1171 VFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGTAIANAVV 1230
Query: 762 EHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYK 821
+ L E I+ TLF+TH+H L E+ ++ ++ +A + D + +T LYK
Sbjct: 1231 KELAETIKCRTLFSTHYHSLV----EDYSKSVCVRLGHMACMVENECEDPSQETITFLYK 1286
Query: 822 VEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862
GAC +S+G + A AN PE V+ KA E E S
Sbjct: 1287 FIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFERMNQS 1327
Score = 111 (44.1 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 30/97 (30%), Positives = 50/97 (51%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD+ + L + + T+ + +L ++ TC GKRLL WL PL + I+ R
Sbjct: 730 MVLDAVTLNNLEIFLNGTNGSTEGTLLERLD-TCHTPFGKRLLKQWLCAPLCSPSAISDR 788
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLM---HNL 384
LD V+ + ++ LK++ D+ERL+ HN+
Sbjct: 789 LDAVEDLMAVPDKVTEVADLLKKLPDLERLLSKIHNV 825
Score = 48 (22.0 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKT-LRDALTR 214
G+ +VD + + +F DD H + + LVA +L + S+E KT L+ +L+
Sbjct: 556 GVCFVDTSLGKFFIGQFSDDRHCSRFRT-LVAHYPPVQILFEKGNLSTETKTVLKGSLSS 614
Query: 215 C 215
C
Sbjct: 615 C 615
Score = 37 (18.1 bits), Expect = 5.2e-49, Sum P(3) = 5.2e-49
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 32 TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVS 81
T+ +R Y+T +G+++T + T+ +G S +++S
Sbjct: 630 TKTLRTLLEGGYFTGNGDSSTVLPLVLKGMTSESDSVGLTPGEESELALS 679
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 546 (197.3 bits), Expect = 6.8e-50, P = 6.8e-50
Identities = 145/376 (38%), Positives = 211/376 (56%)
Query: 537 ETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSEL 596
+T K+ ++ +LK+ D+ + +K+L + + E + A+ L+EL
Sbjct: 493 QTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAEL 552
Query: 597 DVLLSFADLASSCPTPYTRPD-INPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGK 655
DVL++ A+ A + YT P I+ P + I EG RHP VE FI N L +
Sbjct: 553 DVLVNLAERAYTLN--YTCPTFIDKPGIR--ITEG-RHPVVEQVLNEPFIANPLNLSPQR 607
Query: 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715
IITGPNMGGKST++RQ + LMA +GS+VP + I D IF RVGA D G
Sbjct: 608 RML-IITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASG 666
Query: 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775
STFM EM ETA+IL AT+ SL+++DE+GRGTSTYDG LAWA E+L +I+A TLFA
Sbjct: 667 RSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA 726
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSA--HIDSTSRKLTMLYKVEPGACDQSFGI 833
TH+ ELT L ++M GVAN H+ A H D+ + ++ V+ GA +S+G+
Sbjct: 727 THYFELTQLP---------EKMEGVANVHLDALEHGDT----IAFMHSVQDGAASKSYGL 773
Query: 834 HVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARA 893
VA A P+ V+ AR+K ELE +P+A + +++ G++ +S P + S A A
Sbjct: 774 AVAALAGVPKEVIKRARQKLRELESISPNAAAT---QVD-GTQMSLLSVPEETSP-AVEA 828
Query: 894 HQFLKEFSDMPLETMD 909
+ L S P + ++
Sbjct: 829 LENLDPDSLTPRQALE 844
Score = 197 (74.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 97/387 (25%), Positives = 180/387 (46%)
Query: 248 RDLVS-GFEIAPGAL---GALLSYAELLSDESNYGNYYIRKYSL----DSYMRLDSAAMR 299
RDLV G E AP L G LL YA+ D +IR ++ DS + +D+A R
Sbjct: 220 RDLVGFGVENAPRGLCAAGCLLQYAK---DTQRTTLPHIRSITMEREQDSII-MDAATRR 275
Query: 300 ALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVD 359
L + ++ +N +L +++ T T MG R+L WL P+ D + R + A D
Sbjct: 276 NLEITQNLAGGAEN-TLASVLDCTVTP-MGSRMLKRWLHMPVRDTRVLLERQQTIGALQD 333
Query: 360 DTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFS 419
TA L+ L+++ D+ER++ L R A + + ++ + +LP +R+ L+ +
Sbjct: 334 FTA---GLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPV 390
Query: 420 SLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLS---ALKN- 475
++E+ + L D L + A+++T L + + G +I+S Y+ L AL +
Sbjct: 391 QALREK-MGEFAELRD--LLER--AIIDTPPVLVR-DGG--VIASGYNEELDEWRALADG 442
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
+ LER + ++ + LD LK+ G+ +I++ + ++
Sbjct: 443 ATDYLERL--EVRERERTGLD-----TLKVGFNAVHGYYIQISRGQS----HLAPINYMR 491
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
+T K+ ++ +LK+ D+ + +K+L + + E + A+ L+E
Sbjct: 492 RQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAE 551
Query: 596 LDVLLSFADLASS----CPTPYTRPDI 618
LDVL++ A+ A + CPT +P I
Sbjct: 552 LDVLVNLAERAYTLNYTCPTFIDKPGI 578
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 488 (176.8 bits), Expect = 7.2e-50, Sum P(3) = 7.2e-50
Identities = 127/337 (37%), Positives = 187/337 (55%)
Query: 536 LETRKDGVKFTNTKL--KKLGDQYQKVLEEYKNCQ-KELVNRVIQTAVTFSEIFKSLATM 592
L++ K G K TK+ KKL + EE ++ K+ + R+ + ++S
Sbjct: 996 LKSTKKGCKRYWTKVIEKKLSNLINA--EERRDASLKDCMRRLFYNFDKNHKDWQSAVEC 1053
Query: 593 LSELDVLLSFADLASSCPTPYTRPDINPP--DVGDII-LEGSRHPCVEAQDWVN-FIPND 648
+ LDVLL A + P RP + P D + L+GSRHPC+ + + FIPND
Sbjct: 1054 TAVLDVLLCLASYSQGGDGPMCRPVLLLPGEDTHPFLELKGSRHPCITKTFFGDDFIPND 1113
Query: 649 ----CKL---IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDC 701
C+ GK++ ++TGPNMGGKST IRQ G+ +MAQ+G +VP + ++ D
Sbjct: 1114 ILIGCEEDAEADGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQMGCYVPAELCRLTPVDR 1173
Query: 702 IFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAIC 761
+F R+GA D + G STF E+ ETASIL+ AT SL+++DELGRGT+T+DG +A A+
Sbjct: 1174 VFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGTAIASAVV 1233
Query: 762 EHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK-LTMLY 820
+ L E I+ TLF+TH+H L E+ ++ N +G V + S++ +T LY
Sbjct: 1234 KELAETIKCRTLFSTHYHSLV----EDYSK-NVCVRLGHMACMVENECEDPSQETITFLY 1288
Query: 821 KVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
K GAC +S+G + A AN PE V+ KA E E
Sbjct: 1289 KFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1325
Score = 112 (44.5 bits), Expect = 7.2e-50, Sum P(3) = 7.2e-50
Identities = 34/100 (34%), Positives = 52/100 (52%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD+ + L + + T+ + +L ++ TC GKRLL WL PL + I+ R
Sbjct: 733 MVLDAVTLSNLEIFLNGTNGSTEGTLLERLD-TCHTPFGKRLLKQWLCAPLCSPSAISDR 791
Query: 351 LDIVQ---AFVDDTALRQDLRQHLKRISDIERLM---HNL 384
LD ++ A D A DL LK++ D+ERL+ HN+
Sbjct: 792 LDAIEDLMAVPDKVAEVADL---LKKLPDLERLLSKIHNV 828
Score = 54 (24.1 bits), Expect = 7.2e-50, Sum P(3) = 7.2e-50
Identities = 32/115 (27%), Positives = 53/115 (46%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKT-LRDALTR 214
G+ +VD + L +F DD H + + + LVA +L + S+E KT L+ +L+
Sbjct: 559 GVCFVDTSLGKFFLGQFSDDRHCSRLRT-LVAHYPPVQILFEKGNLSTETKTVLKGSLSS 617
Query: 215 CGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAE 269
C L E + D + L L+ G + SG E+ P L A+ S ++
Sbjct: 618 C---LQEGLIPGSQFWDATKTLRTLLEGGYFTGNE-GSGAELPP-VLKAMTSESD 667
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 496 (179.7 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 128/341 (37%), Positives = 189/341 (55%)
Query: 536 LETRKDGVK--FTNTKLKKLGDQYQKVLEEYKNCQ-KELVNRVIQTAVTFSEIFKSLATM 592
L++ K G K +T T KKL + EE ++ K+ + R+ + ++S
Sbjct: 866 LKSTKKGCKRYWTKTIEKKLANLINA--EERRDVSLKDCMRRLFYNFDKNYKDWQSAVEC 923
Query: 593 LSELDVLLSFADLASSCPTPYTRPDIN-PPDVGDII-LEGSRHPCVEAQDWVN-FIPND- 648
++ LDVLL A+ + P RP I P D + L+GSRHPC+ + + FIPND
Sbjct: 924 IAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDI 983
Query: 649 ---CK---LIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCI 702
C+ GK++ ++TGPNMGGKST +RQ G+ +MAQ+G +VP + ++ D +
Sbjct: 984 LIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRV 1043
Query: 703 FARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICE 762
F R+GA D + G STF E+ ETASIL AT SL+++DELGRGT+T+DG +A A+ +
Sbjct: 1044 FTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVK 1103
Query: 763 HLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK-LTMLYK 821
L E I+ TLF+TH+H L E+ ++ N +G V + S++ +T LYK
Sbjct: 1104 ELAETIKCRTLFSTHYHSLV----EDYSQ-NVAVRLGHMACMVENECEDPSQETITFLYK 1158
Query: 822 VEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862
GAC +S+G + A AN PE V+ KA E E S
Sbjct: 1159 FIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQS 1199
Score = 111 (44.1 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD+ + L + + T+ + +L ++ TC GKRLL WL PL + IN R
Sbjct: 603 MVLDAVTLNNLEIFLNGTNGSTEGTLLERVD-TCHTPFGKRLLKQWLCAPLCNHYAINDR 661
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLM---HNL 384
LD ++ + ++ + LK++ D+ERL+ HN+
Sbjct: 662 LDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNV 698
Score = 42 (19.8 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC 215
G+ +VD + + +F DD H + + LVA +L + S E KT+ + C
Sbjct: 427 GVCFVDTSLGKFFIGQFSDDRHCSRFRT-LVAHYPPVQVLFEKGNLSKETKTILKSSLSC 485
Query: 216 GV 217
+
Sbjct: 486 SL 487
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 548 (198.0 bits), Expect = 1.7e-49, P = 1.7e-49
Identities = 239/939 (25%), Positives = 415/939 (44%)
Query: 35 VRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLL- 93
V FF + +Y + EN IA T + L+ G G + + + FE A++ +
Sbjct: 333 VVFFQKGKFYELY-ENDAVIANTQFD----LKIAGGGRANMKLAGIPEMSFEYWAKEFIS 387
Query: 94 -------LERTDHTL--ELYEGSGSNWRLVKSGTPGNL--GSYEDVLFANNEMQDTPVIV 142
+E+ + L ++ G+ ++++ G L G+ ++ +N+M +
Sbjct: 388 HGYKVAKVEQKESMLVKQMRGGATKEEKIIERELKGILTAGTLTNLDMISNDM--ATYCL 445
Query: 143 ALFPNFRENGC-TIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKE--------C 193
++ +E+G T G+ +VD L E DD+ T +++ + + KE C
Sbjct: 446 SIKEEDKEDGTKTFGVAFVDTATSELNFIELDDDAECTKLDTLITQINPKEIICEKGNLC 505
Query: 194 LLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQ----DLDRLVRGSVEP--V 247
+ T+ +K C + +TE + LV+ D + L S P +
Sbjct: 506 QIATKILKF--CTHSDHQIWNALNPITEFWDYDIALEQLVKAKYYDAENLDDYSNYPKVL 563
Query: 248 RDLVSGFEIAPGALGALLSYAELLS-DES--NYGNYYIRKYSLDSYMRLDSAAMRALNVL 304
D ++A A G LL Y ++L D S + GN + S +S + + LN L
Sbjct: 564 VDFKENHQVAFNAFGGLLYYLKMLKLDTSIMSLGNIHEYHISRNSASHMILDGV-TLNNL 622
Query: 305 ESKTDANKNFSLFGLMN--RTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
E + + + L T GKR L W+ PL V+EIN R D V ++D
Sbjct: 623 EILNNTSDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYDSVDYLMNDGL 682
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
+LR L+ D + +LE+ A + ++ +++ I S + G S L+
Sbjct: 683 ---ELRSILQ---DTLANIPDLERLLARVHGGTLKFRDFLKV--IES-FESIAGVSSKLV 733
Query: 423 KERYLDP---LESLTDDDH-LNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQE 478
++ + L H + + I E + D +Q +N + S+ D N Q
Sbjct: 734 DFTNVESGMLYKYLKSFPHEMRELIQQWEDAFDREQAKNDIIVPSAGTD---EEFDNSQA 790
Query: 479 SLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGH--VFRITKKE----EPKIRKKLTTQ 532
S+E DL +DK LK K T +R + KE E + K+
Sbjct: 791 SME------------DLKTQLDKLLKEYKRTYKSQEICYRDSGKEIYLIEVPFKLKVPGD 838
Query: 533 FIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATM 592
+ + + ++ + +++ L + + E +K L R+ + ++ +
Sbjct: 839 WKQMGSTSKVKRYYSPEVETLAKELRGQQELHKMVCDTLKIRMYEKFDKHYNVWMQVIQT 898
Query: 593 LSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLI 652
++ +D LL+ + + P RP + D G I + RHPC + FIPND +L
Sbjct: 899 IANIDCLLALTKASETIGYPSCRPKLIEADKGCINFKELRHPCFVSTK--EFIPNDVQLG 956
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712
+ F ++TG N GKST +R + I+++Q+G ++P + A ++ D I R+GA D
Sbjct: 957 GDEPHFGLLTGANAAGKSTLMRTTALAIILSQIGCYIPAESAELTPVDRIMTRLGANDNI 1016
Query: 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPT 772
L+G STF E+ ET IL AT RSL+I+DELGRG S+ DGF +A ++ HL +++
Sbjct: 1017 LQGKSTFFVELSETKKILSNATPRSLVILDELGRGGSSSDGFAIAESVLHHLATHVQSLG 1076
Query: 773 LFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFG 832
FATH+ L L+ + + +M G+ +DS SR +T LYK+E G +SFG
Sbjct: 1077 FFATHYGTL-GLSFKTHPQIKQLRM-GIV-------VDSGSRNITFLYKLETGTAPKSFG 1127
Query: 833 IHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAK---IEVGSKRKRI----SDPND 885
++VA P+++V A A E + +++++K I +G + + ND
Sbjct: 1128 MNVASMCGIPDAIVDNAEIAAKAYEQTSKLKKLAEESKGDDISLGLQSDFVWLATGKIND 1187
Query: 886 MSRGAARAHQFLKEFSDMPLETMDLKEALERVKRMKDDL 924
+S+ LK D P++ K ALE + +M D L
Sbjct: 1188 LSK------DILKY--DEPIK----KSALENIYKMIDRL 1214
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 496 (179.7 bits), Expect = 2.0e-49, Sum P(3) = 2.0e-49
Identities = 128/341 (37%), Positives = 189/341 (55%)
Query: 536 LETRKDGVK--FTNTKLKKLGDQYQKVLEEYKNCQ-KELVNRVIQTAVTFSEIFKSLATM 592
L++ K G K +T T KKL + EE ++ K+ + R+ + ++S
Sbjct: 996 LKSTKKGCKRYWTKTIEKKLANLINA--EERRDVSLKDCMRRLFYNFDKNYKDWQSAVEC 1053
Query: 593 LSELDVLLSFADLASSCPTPYTRPDIN-PPDVGDII-LEGSRHPCVEAQDWVN-FIPND- 648
++ LDVLL A+ + P RP I P D + L+GSRHPC+ + + FIPND
Sbjct: 1054 IAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDI 1113
Query: 649 ---CK---LIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCI 702
C+ GK++ ++TGPNMGGKST +RQ G+ +MAQ+G +VP + ++ D +
Sbjct: 1114 LIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRV 1173
Query: 703 FARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICE 762
F R+GA D + G STF E+ ETASIL AT SL+++DELGRGT+T+DG +A A+ +
Sbjct: 1174 FTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVK 1233
Query: 763 HLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK-LTMLYK 821
L E I+ TLF+TH+H L E+ ++ N +G V + S++ +T LYK
Sbjct: 1234 ELAETIKCRTLFSTHYHSLV----EDYSQ-NVAVRLGHMACMVENECEDPSQETITFLYK 1288
Query: 822 VEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862
GAC +S+G + A AN PE V+ KA E E S
Sbjct: 1289 FIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQS 1329
Score = 111 (44.1 bits), Expect = 2.0e-49, Sum P(3) = 2.0e-49
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD+ + L + + T+ + +L ++ TC GKRLL WL PL + IN R
Sbjct: 733 MVLDAVTLNNLEIFLNGTNGSTEGTLLERVD-TCHTPFGKRLLKQWLCAPLCNHYAINDR 791
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLM---HNL 384
LD ++ + ++ + LK++ D+ERL+ HN+
Sbjct: 792 LDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNV 828
Score = 42 (19.8 bits), Expect = 2.0e-49, Sum P(3) = 2.0e-49
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC 215
G+ +VD + + +F DD H + + LVA +L + S E KT+ + C
Sbjct: 557 GVCFVDTSLGKFFIGQFSDDRHCSRFRT-LVAHYPPVQVLFEKGNLSKETKTILKSSLSC 615
Query: 216 GV 217
+
Sbjct: 616 SL 617
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 542 (195.9 bits), Expect = 2.6e-49, P = 2.6e-49
Identities = 131/366 (35%), Positives = 201/366 (54%)
Query: 501 KALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKV 560
+ LK+ FG+ I++ + +K +++ +T + ++ +LK+ +
Sbjct: 529 QTLKVGFNKAFGYYLSISRGKA----EKAPPEYLRKQTLTNEERYITPELKERETRILNA 584
Query: 561 LEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINP 620
++ + ++ N + Q A + +A ++ LD L A++A Y RP +
Sbjct: 585 QQQTNQLEYDIFNILRQEAGRHVSALRQVARRVAALDALAGLAEVAVY--HDYCRPVLG- 641
Query: 621 PDVGDIILEGSRHPCVEAQDWVNF-IPNDCKL-IRGKSWFQIITGPNMGGKSTFIRQVGV 678
+ ++ +E RHP +E F +PND ++ + I+TGPNM GKS+FIRQV +
Sbjct: 642 -EGREVHIEAGRHPVIEQAIPAGFFVPNDARMGAEAEPDLIILTGPNMSGKSSFIRQVAL 700
Query: 679 NILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSL 738
L+AQVG+FVP A + V D IF RVGA D G STFM EM ETA+IL AT RSL
Sbjct: 701 IQLLAQVGAFVPARGAVLGVADRIFTRVGAVDDLATGQSTFMVEMTETANILNHATPRSL 760
Query: 739 IIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMV 798
+++DE+GRGT+T+DG +AWA+ E+L IR T+FATH+HEL LA +
Sbjct: 761 VLLDEIGRGTATFDGLAIAWAVAEYLASHIRCRTIFATHYHELNELA---------SVVS 811
Query: 799 GVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858
GVANY V+ + + ++ L++V PG D+S+GI V A P SVV AR A++E
Sbjct: 812 GVANYQVT--VQELADRIVFLHRVTPGGADRSYGIEVGRLAGLPPSVVARARTVLAQVEQ 869
Query: 859 FTPSAV 864
+ AV
Sbjct: 870 HSQIAV 875
Score = 206 (77.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 78/325 (24%), Positives = 143/325 (44%)
Query: 282 IRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL 341
IR Y+L Y+ LD R L + ++ D + SL ++RT T MG R L WL QPL
Sbjct: 322 IRTYTLSQYLILDHQTRRNLELTQTVRDGAQYGSLLWALDRTRTV-MGGRALRRWLLQPL 380
Query: 342 LDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSS 401
LD I R D V D+ LR+ L++ L+ + D+ERL A + +V L +S
Sbjct: 381 LDTRAIGRRQDSVAELYDEGLLRERLQRILESVYDLERLAGRCGSGTANARDLVALGESL 440
Query: 402 IRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYM 461
++LP + A+ S +K P+E + L + LV+T L E G +
Sbjct: 441 LKLPALAEAVA---ASTSPYLKALQSIPVELERLGEKLRR--TLVDTP-PLILTEGG--L 492
Query: 462 ISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKE 521
I + L ++ + + L + + + + LK+ FG+ I++ +
Sbjct: 493 IRAGVHPELEGMRGQLIEDRDWLVDLEARERARTGI---QTLKVGFNKAFGYYLSISRGK 549
Query: 522 EPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVT 581
+K +++ +T + ++ +LK+ + ++ + ++ N + Q A
Sbjct: 550 A----EKAPPEYLRKQTLTNEERYITPELKERETRILNAQQQTNQLEYDIFNILRQEAGR 605
Query: 582 FSEIFKSLATMLSELDVLLSFADLA 606
+ +A ++ LD L A++A
Sbjct: 606 HVSALRQVARRVAALDALAGLAEVA 630
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 538 (194.4 bits), Expect = 5.9e-49, P = 5.9e-49
Identities = 151/435 (34%), Positives = 218/435 (50%)
Query: 447 ETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLD 506
E + D L N +I + L L+ S + + + ++ + +P +LK+
Sbjct: 401 EINNDPPLLINKGGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIP---SLKVA 457
Query: 507 KGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKN 566
FG+ + + K+ + ++I +T + ++ +LK ++ ++
Sbjct: 458 YNNVFGYYIEVRNIHKDKVPQ----EWIRKQTLVNAERYITQELKVYEEKILGAEDKILV 513
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDI 626
+ +L ++Q F + A ++ LD LLSFA++A Y RP I DV DI
Sbjct: 514 LETQLYTDLVQALTEFIPQIQINANQIARLDCLLSFANVARE--NNYIRPVIEDNDVLDI 571
Query: 627 ILEGSRHPCVEAQDWVN--FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ 684
+G RHP +E Q + +I ND L IITGPNM GKS +RQ + L+AQ
Sbjct: 572 -RQG-RHPVIEKQLPIGEKYIANDVMLDSASQQIIIITGPNMAGKSALLRQTALITLLAQ 629
Query: 685 VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDEL 744
+GSFVP + A I + D IF RVGA D G STFM EM E A IL + RSL++ DEL
Sbjct: 630 IGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDEL 689
Query: 745 GRGTSTYDGFGLAWAICEHLVE--EIRAPTLFATHFHELTALAHENANEFNTKQMVGVAN 802
GRGTSTYDG +AWAI E++ E + +A TLFATH+HEL NE K + N
Sbjct: 690 GRGTSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHEL--------NEME-KSFKRIKN 740
Query: 803 YHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862
Y+VS + K+ L K+E G + SFGIHVA+ A P+S+V A +LE
Sbjct: 741 YNVS--VKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLESDNRQ 798
Query: 863 AVISDDAKIEVGSKR 877
IS EV R
Sbjct: 799 QGISGKPLTEVSENR 813
Score = 210 (79.0 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 80/348 (22%), Positives = 160/348 (45%)
Query: 260 ALGALLSYAELLSDESNYGNYY-IRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFG 318
A GA+L Y + + + G+ + + D Y+RLD +R+L ++ S D SL
Sbjct: 225 ASGAILQYLTM-TQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGGS--SLLN 281
Query: 319 LMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIE 378
+++RT + MG RLL W+ PL D IN RL++V+ F ++ + + L I D+E
Sbjct: 282 VIDRTISP-MGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLE 340
Query: 379 RLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDH 438
R++ + R +++V+L + + I+ A + + + I E+ L+ S+ D
Sbjct: 341 RIISKVAVGRVSPREVVQLKVALQAIEPIKQACLEADNASLNRIGEQ-LNLCISIRD--R 397
Query: 439 LNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLP 498
+ K E + D L N +I + L L+ S + + + ++ + +P
Sbjct: 398 IAK-----EINNDPPLLINKGGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIP 452
Query: 499 VDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQ 558
+LK+ FG+ + + K+ + ++I +T + ++ +LK ++
Sbjct: 453 ---SLKVAYNNVFGYYIEVRNIHKDKVPQ----EWIRKQTLVNAERYITQELKVYEEKIL 505
Query: 559 KVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
++ + +L ++Q F + A ++ LD LLSFA++A
Sbjct: 506 GAEDKILVLETQLYTDLVQALTEFIPQIQINANQIARLDCLLSFANVA 553
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 526 (190.2 bits), Expect = 9.4e-49, Sum P(2) = 9.4e-49
Identities = 131/361 (36%), Positives = 197/361 (54%)
Query: 501 KALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKV 560
K+LKL FG+ ++ I + +I +T + +F +LK+ +
Sbjct: 458 KSLKLGYNRVFGYYIEVSNANLADIPQN----YIRKQTLVNAERFITPELKEYENLILNA 513
Query: 561 LEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINP 620
E + L +V+ F S A L+ LDVL +FA++A Y RP +
Sbjct: 514 KERLLEMETGLYEQVLNQLGGFYSALLSNAAALASLDVLSAFAEVAVR--NGYVRPLFHS 571
Query: 621 PDVGDIILEGSRHPCVE-AQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679
+ +++ RHP VE + +F ND L I+TGPNM GKST+++Q +
Sbjct: 572 EN--SLVIHRGRHPMVEQGLGYGSFAANDISLSAEDCQIIILTGPNMAGKSTYLKQTALI 629
Query: 680 ILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLI 739
+LMAQ+GS+VP + A + + D IF+R+GA + G STFM EM+ETASIL AT RSL+
Sbjct: 630 VLMAQIGSYVPAETAELCLTDRIFSRIGAREDLSAGQSTFMVEMVETASILNTATSRSLL 689
Query: 740 IIDELGRGTSTYDGFGLAWAICEHLVEE--IRAPTLFATHFHELTALAHENANEFNTKQM 797
I+DE+GRGTSTYDG +A A+ E++ + + A TLFATH+HEL LA+ +
Sbjct: 690 ILDEIGRGTSTYDGLAIAQAVVEYIHSQPSLHAKTLFATHYHELVELAN---------YL 740
Query: 798 VGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
V NY+++ D ++ L+++ PG D+S+GIHVA+ A P V+ A E ELE
Sbjct: 741 PRVKNYNIAVSEDRG--EVVFLHRIVPGGVDKSYGIHVAKLAGLPGWVIKRAYEVLTELE 798
Query: 858 D 858
+
Sbjct: 799 N 799
Score = 222 (83.2 bits), Expect = 4.2e-14, Sum P(3) = 4.2e-14
Identities = 91/353 (25%), Positives = 160/353 (45%)
Query: 256 IAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFS 315
+A A GALL+Y E S + Y++ YM++DS + L + S + S
Sbjct: 225 LAVSAAGALLNYLEETQKSSLKQLERLAAYTISDYMQIDSHTLSNLEIFRSSGGNSLKGS 284
Query: 316 LFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRIS 375
L G++++T TA MG RLL +L QPLL +I RL V F +++ R L + L +I+
Sbjct: 285 LLGVLDQTKTA-MGGRLLRKFLGQPLLRQEDIEKRLSAVDYFFEESLARASLAKALGQIA 343
Query: 376 DIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTD 435
D+ER+ + + ++ ++++ L S L + SA+ + QF + R L L
Sbjct: 344 DMERIANRIRQKTILPKELISLKNS---LETV-SAIHR---QFGLMPPPRLAYFLNGLKP 396
Query: 436 DDHLNKFIALVETSVDLDQLEN-GEYMISSSYDTGLSALKNEQESLERQIHS-LHKQTAS 493
L + + +V +++ D GE + S G + ++ SL + L + A
Sbjct: 397 ---LPEMLDIVNEAINDDPPSTLGEGKVIRS---GFNPEMDKLCSLAGDARTFLSQMEAR 450
Query: 494 DLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKL 553
+ + K+LKL FG+ ++ I + +I +T + +F +LK+
Sbjct: 451 EREQTGIKSLKLGYNRVFGYYIEVSNANLADIPQN----YIRKQTLVNAERFITPELKEY 506
Query: 554 GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
+ E + L +V+ F S A L+ LDVL +FA++A
Sbjct: 507 ENLILNAKERLLEMETGLYEQVLNQLGGFYSALLSNAAALASLDVLSAFAEVA 559
Score = 56 (24.8 bits), Expect = 9.4e-49, Sum P(2) = 9.4e-49
Identities = 41/181 (22%), Positives = 74/181 (40%)
Query: 21 FLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDA-LSSV- 78
+L K P A+ FF D+Y E+A A+ T+ R++G G L+ +
Sbjct: 11 YLDIKKNYPE---AIVFFRLGDFYETFEEDARIAARELEIVLTS-REMGKGLKVPLAGIP 66
Query: 79 --SVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLV-KSGTPGNLGSYEDVLFANNEM 135
++ + I R + + + E G R V + TPG + E L +
Sbjct: 67 YHALDNYLSRLINRGYKVAICEQVTKPGETKGLVKRQVTRLVTPGTV--VEPNLL---DS 121
Query: 136 QDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLL 195
+ +++L+ E+ C GL + D++ G + LD +E+ + L E +L
Sbjct: 122 KQNNFLLSLY--LTEDSC--GLAFADISTSEFGCTQ-LD---INGLEAEINRLNPAEIIL 173
Query: 196 P 196
P
Sbjct: 174 P 174
Score = 39 (18.8 bits), Expect = 5.8e-47, Sum P(2) = 5.8e-47
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 9 PELKLDAKQARGFLSFYKTLPNDTRAVRFFD 39
P L LD+KQ LS Y T D+ + F D
Sbjct: 116 PNL-LDSKQNNFLLSLYLT--EDSCGLAFAD 143
Score = 38 (18.4 bits), Expect = 4.2e-14, Sum P(3) = 4.2e-14
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 906 ETMDLKEALERVKRMKDDLEKDAGDCCWLQQ 936
E ++L L RVK + +D G+ +L +
Sbjct: 732 ELVELANYLPRVKNYNIAVSEDRGEVVFLHR 762
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 545 (196.9 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 175/589 (29%), Positives = 290/589 (49%)
Query: 289 SYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEIN 348
++M L S+A+ +L++ E+ TD + SL +++ T T G R L W+ +PL+++++I
Sbjct: 419 THMILPSSAIESLDIFENSTDRSSKGSLLWVLDHTRT-NYGLRNLKNWIAKPLINIDQIQ 477
Query: 349 ARLDIVQAFVDDTA--LRQDLRQHLKRISDIERLMHNLE----KRRA------GLQQIVK 396
RLD VQ + + L L+ D+ER+++ + RR L Q+
Sbjct: 478 QRLDAVQCISTEVGNIFIESLNNMLRDGQDLERILNRIAYGKTSRREVYLFLRELTQLAT 537
Query: 397 LYQSSIRLPYIRSALQQYEGQF---SSLIKERYLDPLESLTDDDHLNKFIALVETSVDLD 453
L+ S R YI + + G+ SSL+ + D L+ + F+A++ LD
Sbjct: 538 LFSSHHR--YIETNVLSANGKIRMQSSLLANIFTD-LDEYWKQFPIPNFLAMINIDAALD 594
Query: 454 QLENG---EYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQ 510
+ + EY + YD L ++Q+ +E I L + + + L
Sbjct: 595 KNPDRPYVEYFNLTKYDRA-EPLISKQQDIEAVIGELRDELKNIRVILKRPMLNYKDEID 653
Query: 511 FGHVFRITKKEE-PKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKV-LEEYKNCQ 568
F R T+ P K+ + V + G KL+ + Q + L+EY++
Sbjct: 654 FLVEIRNTQVSSVPVDWVKVASTKAVSRFQTPGTAKLVAKLQYHKELLQDLALQEYESFI 713
Query: 569 KELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINP-PDVGDII 627
K + ++ + K++ LS D +LS A A+SC Y RP N P ++I
Sbjct: 714 KRITGE-------YTSLRKAILH-LSTYDCILSLA--ATSCNVDYVRPKFNTAPQCINVI 763
Query: 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS 687
R+P +E+ D V ++PND L R IITGPNMGGKS++IRQV + ++MAQ+G
Sbjct: 764 --NGRNPIIESLD-VRYMPNDVNLNREGKKIMIITGPNMGGKSSYIRQVALLVIMAQIGC 820
Query: 688 FVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRG 747
+VP A S+ D IF R+GA D LR STF EM E IL+ +T+ SL+++DE+GRG
Sbjct: 821 YVPAQEAEFSIFDQIFTRIGAYDNLLRNDSTFKIEMTEMVQILRSSTENSLLLLDEVGRG 880
Query: 748 TSTYDGFGLAWAICEHLVEEIRA-PT-LFATHFHELTALAHENANEFNTKQMVGVANYHV 805
T T+DG +++A+ + +E A P LF TH+ L ++ ++G NYH+
Sbjct: 881 TGTHDGISISYALLRYFIELHNACPLILFITHYASLGSIR---------SPILG--NYHM 929
Query: 806 SAHIDSTSR-----KLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 849
S +I+ + LYK++ G S+G++VA+ A+ ++ A
Sbjct: 930 S-YIEEKRPGENWPSVVFLYKLKEGRAHNSYGLNVAKLADIQTGIINRA 977
Score = 41 (19.5 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 72 SDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSG-SNW 111
S A+ S+ + +N + ++ LL DHT Y NW
Sbjct: 425 SSAIESLDIFENSTDRSSKGSLLWVLDHTRTNYGLRNLKNW 465
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 535 (193.4 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 170/542 (31%), Positives = 271/542 (50%)
Query: 367 LRQHLKRISDIERL-----MHNLEKRRAGLQQIV-KLYQSSIR---LPYIRSALQQYEGQ 417
L Q L I++++ +H + K+ +++I+ +L S R L +R A+QQ
Sbjct: 326 LNQRLDAITELKETALYGELHPVLKQIGDIERILARLALRSARPRDLARLRHAMQQLPEL 385
Query: 418 FS--SLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSS--YDTGLSAL 473
S S +K+ +L L T + +++ L+E ++ EN +I G SA
Sbjct: 386 HSVMSELKQPHLTELR--THAEPMDELCDLLERAIK----ENPPVVIRDGGVIADGYSAE 439
Query: 474 KNEQESLER-QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQ 532
+E L L + A + D LK+ G ++++ + +
Sbjct: 440 LDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQSHLV----PPH 495
Query: 533 FIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATM 592
++ +T K+ ++ +LK+ D+ +K+L + + E + LA
Sbjct: 496 YVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQLQQLAAS 555
Query: 593 LSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLI 652
+++LDVL + A+ A + Y RP + + G I ++G RHP VE FI N +L
Sbjct: 556 VAQLDVLQNLAERAENLE--YCRPTL-VQEAG-IHIQGGRHPVVERVMNEPFIANPIELN 611
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712
+ IITGPNMGGKST++RQ + LMA +GS+VP + ASI D IF R+GA D
Sbjct: 612 PQRRML-IITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASDDL 670
Query: 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPT 772
G STFM EM ETA+IL AT SL+++DE+GRGTSTYDG LAWA E L +EI A T
Sbjct: 671 ASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMT 730
Query: 773 LFATHFHELTALAHENANEFNTKQMVGVANYHVSA--HIDSTSRKLTMLYKVEPGACDQS 830
LFATH+ ELT L + + +AN H+ A H D + ++ V+ GA +S
Sbjct: 731 LFATHYFELTELPNV---------LPHLANVHLDAVEHGDG----IAFMHAVQEGAASKS 777
Query: 831 FGIHVAEFANFPESVVTLAREKAAELEDFTPS-AVISDDAKIEVGSKRKRISDPNDMSRG 889
+G+ VA A P+ V+ AR K +LE + A +++++ ++ I +P+ + +
Sbjct: 778 YGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQLSLIPEPSAVEQA 837
Query: 890 AA 891
A
Sbjct: 838 LA 839
Score = 197 (74.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 85/369 (23%), Positives = 160/369 (43%)
Query: 248 RDLVSGFEIAPGALGALLS--YAELLSDESNYGNYYIRKYSLDSYMR---LDSAAMRALN 302
RDLV GF + LG + + + D +IR + D + LD+A R L
Sbjct: 225 RDLV-GFGVEQAKLGLCAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLE 283
Query: 303 VLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTA 362
+ + N +L +++ C MG R+L W+ QP+ D +N RLD + + +TA
Sbjct: 284 LTHNLAGGTDN-TLAEVLDH-CATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETA 340
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
L +L LK+I DIER++ L R A + + +L + +LP + S + + + + +
Sbjct: 341 LYGELHPVLKQIGDIERILARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTEL 400
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSS--YDTGLSALKNEQESL 480
+ + +P++ L D L+E ++ EN +I G SA +E L
Sbjct: 401 RT-HAEPMDELCD---------LLERAIK----ENPPVVIRDGGVIADGYSAELDEWRDL 446
Query: 481 ER-QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETR 539
L + A + D LK+ G ++++ + + ++ +T
Sbjct: 447 ANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQSHLV----PPHYVRRQTL 502
Query: 540 KDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVL 599
K+ ++ +LK+ D+ +K+L + + E + LA +++LDVL
Sbjct: 503 KNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVL 562
Query: 600 LSFADLASS 608
+ A+ A +
Sbjct: 563 QNLAERAEN 571
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 536 (193.7 bits), Expect = 2.2e-48, Sum P(2) = 2.2e-48
Identities = 129/355 (36%), Positives = 198/355 (55%)
Query: 502 ALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVL 561
+LKL K G+ + K P + ++ FI ++ + +++T +L+ L Q K
Sbjct: 466 SLKLGKNNLIGYYVEVPKSA-PLLDSEV---FIHRQSLLNNIRYTTLELQNLEAQIAKAN 521
Query: 562 EEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPP 621
E Y+ + EL + + K + ++ELDV+ SFA++A Y RP ++
Sbjct: 522 ENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVIASFAEIAVQ--RKYVRPQVD-- 577
Query: 622 DVGDIILEGSRHPCVEAQDWVN-FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680
+ ++ + G RHP VE VN F+PND + ++TGPNM GKST++RQ +
Sbjct: 578 NSNELRISGGRHPFVEQ---VNAFVPNDLAFTSAER-VCVLTGPNMAGKSTYLRQNALIT 633
Query: 681 LMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLII 740
++AQ+GSFVP D A I V D +F+R+GA D G STFM EM+ETA+I+ AT RSL+I
Sbjct: 634 ILAQMGSFVPADSAHIGVVDRVFSRIGASDNIAMGKSTFMVEMMETANIVNNATCRSLVI 693
Query: 741 IDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGV 800
+DE+GRGTST DG +A A+ E+L + + T+FATH++EL L E +M
Sbjct: 694 LDEVGRGTSTLDGISIAQAVLEYLHDSVNCKTIFATHYNELCDL------ESKLPRM--- 744
Query: 801 ANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAE 855
Y S + ++ ++YK+ PG D S+GIH A + PE+++ A E A E
Sbjct: 745 KCY--SIEVKRWRDEVLLMYKIVPGRGDNSYGIHTAMLSGIPEAIIRRATEIAKE 797
Score = 314 (115.6 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 122/456 (26%), Positives = 213/456 (46%)
Query: 155 IGLGYVDL-TKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALT 213
IGL ++D+ TK+++ ++ ++ES L + KE LLP +A+ S LR +
Sbjct: 143 IGLAWLDISTKKIV-----FTSANPASLESYLAKIEPKEVLLP-DAIDSE----LRKVIE 192
Query: 214 RCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSD 273
+ + +T R F+ +L D S EI A GAL++YA
Sbjct: 193 QHNIHITRRPNNLFQFDYAANELRGFYNVLQLGFMDARSPCEIV--ACGALIAYARATQM 250
Query: 274 ESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLL 333
+ ++Y Y+ LD++ +R L ++ES+T KN SL ++++TCTAG GKRLL
Sbjct: 251 GELKRLEFPKRYEKGYYLALDASTIRGLELIESQTPGEKN-SLLQVIDQTCTAG-GKRLL 308
Query: 334 HMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQ 393
++ PL+ V EI AR D V+ F LR+ +R L I D ER + + R +
Sbjct: 309 KSYIVSPLISVEEIQARQDKVEFFFIQEELRKKVRTELANIPDAERALSRIALNRG--EP 366
Query: 394 IVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPL-ESLTDDDHLNKFI--ALVETSV 450
I L S +RS+L E FS+ ++ Y+ + + DD L + + A + TS
Sbjct: 367 IDCLAVHSC----MRSSLLLAEC-FSAFLENGYIRSIYDKCAPDDELMETLRTAFLPTS- 420
Query: 451 DLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQ 510
++ +G ++ ++ L L + + I+ L + + +LKL K
Sbjct: 421 --NRKVDGPFL-DPTHHPKLLELNRLSTNADVVINDLLNTYKRNTGI---NSLKLGKNNL 474
Query: 511 FGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKE 570
G+ + K P + ++ FI ++ + +++T +L+ L Q K E Y+ + E
Sbjct: 475 IGYYVEVPKSA-PLLDSEV---FIHRQSLLNNIRYTTLELQNLEAQIAKANENYRKLELE 530
Query: 571 LVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
L + + K + ++ELDV+ SFA++A
Sbjct: 531 LFRELCGKILASEGPLKEMIAAIAELDVIASFAEIA 566
Score = 38 (18.4 bits), Expect = 2.2e-48, Sum P(2) = 2.2e-48
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 121 NLGSYEDVLFANNEMQDTPVIVALFPNFRENG 152
N G D L ++ M+ + ++ F F ENG
Sbjct: 362 NRGEPIDCLAVHSCMRSSLLLAECFSAFLENG 393
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 544 (196.6 bits), Expect = 9.6e-48, Sum P(2) = 9.6e-48
Identities = 203/724 (28%), Positives = 335/724 (46%)
Query: 162 LTKRVLGLAEFLDDSHFTNVESALV--ALGCKECLLPTEAVKSSECKTLRDALTRCGVML 219
L ++ L+EF D S T E ++ + C+ P+ A SSE K L D + ML
Sbjct: 587 LVNNLVPLSEFWD-SEKTIYEVGIIYKRINCQ----PSSAY-SSEGKILGDGSSFLPKML 640
Query: 220 TERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGN 279
+E TE K L L L G++ +R + A L Y D SN
Sbjct: 641 SELA-TEDKNGSLA--LSAL-GGAIYYLRQAFLDESLLRFAKFESLPYC----DFSNVNE 692
Query: 280 YYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQ 339
+M LD+AA+ L + E+ + + +L+ +N+ TA GKRLL WL +
Sbjct: 693 --------KQHMVLDAAALENLEIFENSRNGGYSGTLYAQLNQCITAS-GKRLLKTWLAR 743
Query: 340 PLLDVNEINARLDIVQAFV-DDTALRQDLRQHLKRISDIERLM----HNLEKRRAGLQQI 394
PL + I R D V ++ + R+ L R+ D+ERL+ ++E ++
Sbjct: 744 PLYNTELIKERQDAVAILRGENLPYSLEFRKSLSRLPDMERLIARMFSSIEASGRNGDKV 803
Query: 395 VKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQ 454
V LY+ + + ++ + G + E L ++ D + + L+ L
Sbjct: 804 V-LYEDTAK-KQVQEFISTLRG--CETMAEA-CSSLRAILKHDTSRRLLHLLTPGQSLPN 858
Query: 455 LENGEYMISSSYD---TGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDK---G 508
+ + ++D S E + + K T + + + K LK + G
Sbjct: 859 ISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYDCACK-TVEEFESSLKKHLKEQRKLLG 917
Query: 509 TQFGHVFRITKKEE----PKIRKKLTTQFIVLETRKDGV-KFTNTKLKKLGDQYQKVLEE 563
+ + K E P+ L + K GV ++ +KKL + + E
Sbjct: 918 DASINYVTVGKDEYLLEVPESLSGSVPHDYELCSSKKGVSRYWTPTIKKLLKELSQAKSE 977
Query: 564 YKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDIN--PP 621
++ K + R+I E ++ L + +ELDVL+S A + S RP I+
Sbjct: 978 KESALKSISQRLIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRCRPVISGSTS 1037
Query: 622 D-VGDIILEGSRHPCVEAQDWV--NFIPNDCKLIRG--KSWFQIITGPNMGGKSTFIRQV 676
D V + G HP + +F+PN+ K I G K+ F ++TGPNMGGKST +RQV
Sbjct: 1038 DGVPHLSATGLGHPVLRGDSLGRGSFVPNNVK-IGGAEKASFILLTGPNMGGKSTLLRQV 1096
Query: 677 GVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736
+ +++AQ+G+ VP + +S D I R+GA D + G STF+ E+ ETA +L AT
Sbjct: 1097 CLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRN 1156
Query: 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQ 796
SL+++DELGRGT+T DG +A ++ EH +E+++ F+TH+H L+ ++ T
Sbjct: 1157 SLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSV-------DYQTNP 1209
Query: 797 MVGVANYHVSAHIDSTS---RKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKA 853
V + H++ I ++T LY++ PGAC +S+G++VA A P+ V+ A K+
Sbjct: 1210 KVSLC--HMACQIGEGIGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKS 1267
Query: 854 AELE 857
E E
Sbjct: 1268 QEFE 1271
Score = 39 (18.8 bits), Expect = 9.6e-48, Sum P(2) = 9.6e-48
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTL 208
G+ VD+ + + L +F DD + + L + E + P + + + +T+
Sbjct: 527 GVCLVDVATQKIILGQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTI 579
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 498 (180.4 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 126/358 (35%), Positives = 192/358 (53%)
Query: 503 LKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLE 562
LK+ G+ I++ + + K ++ +T +FT KL+++ + E
Sbjct: 451 LKIRYNKIVGYFIEISRAQAEQAPK----DYLKKQTLVGSERFTMPKLEEIERTILEADE 506
Query: 563 EYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPD 622
+ ++ NR+++ + FS S + + +LD +S L + + RP ++
Sbjct: 507 IIQEIERTEFNRMVEEVLKFSSSLLSFSEEIGDLDFQISL--LTAKDKFGWIRPKLSEDR 564
Query: 623 VGDIILEGSRHPCVEAQ--DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680
D L SRHP VEA FIPN L ++TGPNM GKSTF+RQ+ +N
Sbjct: 565 SLD--LSDSRHPVVEATLPPGQEFIPNSVYLDTQDKAIAVLTGPNMAGKSTFMRQIALNQ 622
Query: 681 LMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLII 740
++ Q+G+FVP A + + D +F R+GAGD G STF EM ETA+IL T+ SLI+
Sbjct: 623 ILFQIGAFVPAKSAKLPIVDKLFTRIGAGDNLTAGESTFFVEMKETANILNHYTEDSLIL 682
Query: 741 IDELGRGTSTYDGFGLAWAICEHLVE-EIRAPTLFATHFHELTALAHENANEFNTKQMVG 799
DE+GRGTSTYDG +AW+I E+L +R T+FATH+HELT L+ ++ G
Sbjct: 683 FDEVGRGTSTYDGMSIAWSILEYLSSLSVRPKTIFATHYHELTELS----------RLGG 732
Query: 800 VANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
+ N ++ ++ R L L KV+ G +SFGI+VA+ A PE +V A E +LE
Sbjct: 733 IFNLYLET-LEKEDRVL-FLRKVKVGKAKKSFGIYVAKIAGVPEPIVKRAAELLTDLE 788
Score = 78 (32.5 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 30/122 (24%), Positives = 55/122 (45%)
Query: 286 SLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVN 345
S ++ +D +R L ++E++ + KN +L+ + N C GKRLL + P D
Sbjct: 252 SSGKFLEMDRETIRNLELVENEKE--KNNTLYSIFN-FCNTAKGKRLLKQRILFPECDPV 308
Query: 346 EINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRA---GLQQIVKLYQSSI 402
+ +R + Q + T L + LK D+ER++ A + ++ S I
Sbjct: 309 VLYSRWE-KQDILLKTVLAPYITA-LKDFGDLERILTRFRGNHAYPRDFRSLLNSISSGI 366
Query: 403 RL 404
+L
Sbjct: 367 KL 368
Score = 38 (18.4 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 172 FLDDSHFTNVESAL-VALGCKECLLPTEAVKSSECKTLRDALTRCG--VMLTERKKTEFK 228
FL+D+ + S L +AL ++ +P + L G + + E+ K E
Sbjct: 51 FLEDAKIAS--SILDIALTKRQNAVPMCGIPYHSKDNYISRLLNAGKKIAICEQSKPEEA 108
Query: 229 TRDLV-QDLDRLVRGSVEPVRDLVSGFE 255
L+ +D+ R++ +L+SGF+
Sbjct: 109 GSKLMTRDVVRIITPGTVIEENLLSGFQ 136
Score = 37 (18.1 bits), Expect = 2.8e-43, Sum P(3) = 2.8e-43
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 353 IVQAFVDDTALRQDLRQHLKRISDIERLMHNLEK 386
I+ F + A +D R L IS +L LEK
Sbjct: 341 ILTRFRGNHAYPRDFRSLLNSISSGIKLKEELEK 374
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 421 (153.3 bits), Expect = 1.5e-47, Sum P(5) = 1.5e-47
Identities = 98/248 (39%), Positives = 139/248 (56%)
Query: 628 LEGSRHPCVEAQDWVN-FIPNDCKL------------IRGKSWFQIITGPNMGGKSTFIR 674
L GSRHPCV + + FIPND + + + ++TGPNMGGKST +R
Sbjct: 1095 LRGSRHPCVTKTFFGDDFIPNDIFIGCPGDEEEAQDDAKALAPCVLVTGPNMGGKSTLMR 1154
Query: 675 QVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT 734
Q G+ +++AQ+G +VP + ++ D +F R+GA D + G STF E+ ETASIL AT
Sbjct: 1155 QCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILLHAT 1214
Query: 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNT 794
+ SL+++DELGRGT+TYDG +A A+ + L E+I TLF+TH+H L H
Sbjct: 1215 NHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVE-DHVQDPAVRL 1273
Query: 795 KQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAA 854
M + D + +T LYK GAC +S+G + A AN PE V+ +KA
Sbjct: 1274 GHMACMVENECE---DPSQETITFLYKFIRGACPKSYGFNAARLANIPEDVIQSGHKKAR 1330
Query: 855 ELEDFTPS 862
+ E T S
Sbjct: 1331 DFERSTVS 1338
Score = 117 (46.2 bits), Expect = 1.5e-47, Sum P(5) = 1.5e-47
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD + L +L++ + +L ++ CT GKRLL W+ PL + + I R
Sbjct: 734 MVLDGVTLANLEILQNSSTGGPEGTLLERLDTCCTP-FGKRLLKQWICAPLCNPSSIGDR 792
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLMHNL 384
LD ++ + + ++ LK++ D+ERL+ +
Sbjct: 793 LDALEDLMGAPSQTSEVTDLLKKLPDLERLLSKI 826
Score = 103 (41.3 bits), Expect = 1.5e-47, Sum P(5) = 1.5e-47
Identities = 31/128 (24%), Positives = 60/128 (46%)
Query: 527 KKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIF 586
+ L ++ V T+K +++ ++++ + Q ++ K+ + R+ + +
Sbjct: 989 RSLPEEYEVRSTKKGWKRYSTKDIERMFSELQSWEDKRDAALKDCMRRLFYNFDKNYKDW 1048
Query: 587 KSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGD-----IILEGSRHPCVEAQDW 641
++ ++ LDVLLS + S RP++ P G + L GSRHPCV +
Sbjct: 1049 QTAVECMAVLDVLLSMCRYSQSADGSMARPEMALPGDGSYSAPFLDLRGSRHPCVTKTFF 1108
Query: 642 VN-FIPND 648
+ FIPND
Sbjct: 1109 GDDFIPND 1116
Score = 42 (19.8 bits), Expect = 1.5e-47, Sum P(5) = 1.5e-47
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 252 SGFEIAPGALGALLSYAE-LLSDESNY--GNY 280
+G+E+A ALG + Y + L D+ + GN+
Sbjct: 676 TGYELALSALGGCMFYLKKCLVDQELFSMGNF 707
Score = 40 (19.1 bits), Expect = 1.5e-47, Sum P(5) = 1.5e-47
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 151 NGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
+G G+ ++D + + +F DD H + + + LVA
Sbjct: 552 HGHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRT-LVA 587
Score = 37 (18.1 bits), Expect = 8.8e-41, Sum P(5) = 8.8e-41
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 523 PKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKEL 571
P++ K+ T F + R GV T +Y + L K C+++L
Sbjct: 908 PEL-KRWDTAFDHQKARTTGVI---TPKAGFDPEYDQALNGIKECERDL 952
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 488 (176.8 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 163/545 (29%), Positives = 267/545 (48%)
Query: 337 LKQPLLDVNEINARLDIVQAFVDDTALR-QDLRQHLKRISDIERLMHNLE---KRRAGLQ 392
L++ L ++ + + L Q D A+ ++ K+I D + + K R ++
Sbjct: 793 LERLLSKIHNVGSPLKS-QNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVICKIRGIME 851
Query: 393 QIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDL 452
+++ ++S I + + EG+F L E L+ ++ D + K L+
Sbjct: 852 EVIDDFKSKILKQVLTLQTKNPEGRFPDLTVE--LNRWDTAFDHEKARK-TGLITPKAGF 908
Query: 453 DQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFG 512
D S YD L+ ++ ++SL + L KQ + + + G
Sbjct: 909 D----------SDYDQALADIRENEQSL---LEYLEKQRSR---IGCRTIVYWGIGR--- 949
Query: 513 HVFRITKKEEPKIRKKLTTQFIVLETRKDGVK--FTNTKLKKLGDQYQKVLEEYKNCQ-K 569
+ +++ E R L ++ + T+K G K +T T KKL + EE ++ K
Sbjct: 950 NRYQLEIPENFTTRN-LPEEYELKSTKK-GCKRYWTKTIEKKLANLINA--EERRDVSLK 1005
Query: 570 ELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPP--DVGDII 627
+ + R+ + +++ ++ LDVLL A+ + P RP I P D +
Sbjct: 1006 DCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTPPFL 1065
Query: 628 -LEGSRHPCVEAQDWVN-FIPND----CKLIR---GKSWFQIITGPNMGGKSTFIRQVGV 678
L+GSRHPC+ + + FIPND C+ K++ ++TGPNMGGKST +RQ G+
Sbjct: 1066 YLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENDKAYCVLVTGPNMGGKSTLMRQAGL 1125
Query: 679 NILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSL 738
+MAQ+G +VP + ++ D +F R+GA D + G STF E+ ETASIL AT SL
Sbjct: 1126 LAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSL 1185
Query: 739 IIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMV 798
+++DELGRGT+T+DG +A A+ + L E I+ TLF+TH+H L E+ ++ N +
Sbjct: 1186 VLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLV----EDYSQ-NVAVRL 1240
Query: 799 GVANYHVSAHIDSTSRK-LTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
G V + S++ +T LYK GAC +S+G + A AN PE V+ KA E E
Sbjct: 1241 GHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1300
Query: 858 DFTPS 862
T S
Sbjct: 1301 KMTQS 1305
Score = 106 (42.4 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M LD+ + L + + T+ + +L ++ TC GKRLL WL PL + I+ R
Sbjct: 708 MVLDAVTLNNLEIFLNATNGSPEGTLLEKID-TCHTPFGKRLLKQWLCAPLCNPYAISDR 766
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLM---HNL 384
LD ++ + ++ LK++ D+ERL+ HN+
Sbjct: 767 LDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHNV 803
Score = 37 (18.1 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
G+ +VD + + +F DD H + + LVA
Sbjct: 532 GVCFVDTSLGKFFIGQFSDDRHCSRFRT-LVA 562
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 527 (190.6 bits), Expect = 2.3e-47, P = 2.3e-47
Identities = 178/637 (27%), Positives = 317/637 (49%)
Query: 290 YMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINA 349
YM L + + +L + + TD SLF L+N T T G RLL W+ +PL+ + +I
Sbjct: 413 YMILPANTLNSLEIFTNTTDHTTKGSLFKLLNNTKTI-FGSRLLQKWVSRPLVHIQDIKD 471
Query: 350 RLDIVQAFVDD-TALRQDLRQHLKRIS--DIERLM---------HNLEKRRAGLQQIVKL 397
R ++ + + + L +I D+E L+ +N R +Q+ L
Sbjct: 472 RHQAIEDLQSEYNHVVDSISNFLTKIKYLDLEGLLSKIHYSSTNNNNNNLRINRKQVYLL 531
Query: 398 YQSSIRLPYIRSALQQYEG-----QFSSLIKERYLDPLESLTDDDHL--NKFIALVETSV 450
+ L I +Q++E +F S + + D L +++ D + F+++++ S
Sbjct: 532 LSN---LQEILILVQKFEKSIKSFKFKSSLLIQIFDELLTISQTDIIIIENFLSMIDLSF 588
Query: 451 DLDQLENGE----YMISSSYDTGLSALKN---EQESLER-QIHSLHKQTASDLDLPVDKA 502
+D E+ E + +S+D+ +N Q+ +E+ Q+ + K+ + L K
Sbjct: 589 -IDCKESSEQCRKFFKRNSFDSIELQYQNIAQYQQQIEQEQLEIIRKELGNS-KL---KY 643
Query: 503 LKLDKGTQFGHVFRITKKEEPKIRKKLTTQ-FIVLETRKDGVKFTN---TKLKKLGDQYQ 558
++ D G ++ + I + K+ K L + +I++++ + ++ T+ KL ++
Sbjct: 644 VQKD-GERY--LIEIRNNQRDKLSKILDDKDYILIKSTQTITRYRKKSVTEYLKLLQYHE 700
Query: 559 KVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDI 618
++L K C +E N + ++ +K + L+ D LLS SS P YTRP +
Sbjct: 701 EML--IKTCDEEFQNFLKDLDSNYTLFYKIIKN-LAIFDCLLSLTT-TSSLPN-YTRPTL 755
Query: 619 NPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKL-IR-GKSWFQIITGPNMGGKSTFIRQV 676
D+ I+++ +RHP +E Q N++ ND + I K+ IITGPNMGGKS++++ V
Sbjct: 756 IDDDL-TILVKQARHPTIE-QLRPNYVANDININIEYDKNRVLIITGPNMGGKSSYVKTV 813
Query: 677 GVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736
+ +M Q+G ++PC A++ + D IF R+GA D L+G STFM EML+ +I+ ++R
Sbjct: 814 ALLTVMTQIGCYLPCQNATMGIFDSIFIRMGANDNILKGYSTFMMEMLQCKNIISMMSNR 873
Query: 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVE-EIRAPTLFATHFHELTALAHENANEFNTK 795
SLII+DE+GRGT T DG LA++I ++L+E E + LF TH+ + L E N+
Sbjct: 874 SLIILDEIGRGTGTIDGISLAYSILKYLIESEFKPLVLFITHYPSIHVLEQEYPNQLVVN 933
Query: 796 QMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA---REK 852
+G + + ++ LY + G + S+G++VA+ A ++ A EK
Sbjct: 934 YHMGYQE--IKNNTPGEIPEIIFLYNLCRGVVNNSYGLNVAKLAGISHDIIKQAYRVSEK 991
Query: 853 AA---ELEDFTPSAVISDDAKIEVGSKRKRISDPNDM 886
EL+++ A + A E GS S PN +
Sbjct: 992 VKSDIELKEYWKFAHSLNKALKEGGS-----SSPNQL 1023
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 528 (190.9 bits), Expect = 3.4e-47, Sum P(2) = 3.4e-47
Identities = 136/401 (33%), Positives = 217/401 (54%)
Query: 461 MISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKK 520
+I Y+ L ++ + + I L +Q + ++LK+ FG+ +TK
Sbjct: 411 LIKDGYNQKLDEYRDASRNGKDWIARLEQQEREYTGI---RSLKVGFNKVFGYYIEVTKA 467
Query: 521 EEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKN-CQKE--LVNRVIQ 577
+ + ++ +T + ++ +LK ++ +LE N C+ E L + +
Sbjct: 468 NLHLLEEG---RYERKQTLTNAERYITPELK---EKEALILEAENNICELEYELFTELRE 521
Query: 578 TAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVE 637
+ + LA +SELD L FA ++ + YT+P+ + +V ++EG RHP VE
Sbjct: 522 KVKQYIPRLQQLAKQMSELDALQCFATISEN--RHYTKPEFSKDEVE--VIEG-RHPVVE 576
Query: 638 -AQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASI 696
D ++PN+C + + +ITGPNM GKST++RQ+ + +MAQ+G FVP +A +
Sbjct: 577 KVMDSQEYVPNNCMMGDNRQML-LITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVL 635
Query: 697 SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGL 756
+ D IF R+GA D + G STFM EMLE + + AT SLI+ DE+GRGTSTYDG L
Sbjct: 636 PIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMAL 695
Query: 757 AWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKL 816
A AI E++ + I A TLF+TH+HELT L E Q+ N HV A + + +
Sbjct: 696 AQAIIEYVHDHIGAKTLFSTHYHELTVL------EDKLPQL---KNVHVRA--EEYNGTV 744
Query: 817 TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
L++++ GA D+S+GIHVA+ A P ++ A++ ELE
Sbjct: 745 VFLHQIKEGAADKSYGIHVAQLAELPGDLIARAQDILKELE 785
Score = 228 (85.3 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 81/342 (23%), Positives = 156/342 (45%)
Query: 282 IRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL 341
++ Y L+ M++D + R L + E+ NK SL L++ T TA MG RLL W+ +PL
Sbjct: 241 VQVYELEEAMKIDLYSKRNLELTETIRSKNKKGSLLWLLDETKTA-MGGRLLKQWIDRPL 299
Query: 342 LDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSS 401
+ VN+I R ++V+ + R+DLR+ LK + D+ERL + + +++L +S
Sbjct: 300 IRVNQIEERQEMVETLMSHFFEREDLRERLKEVYDLERLAGRVAFGNVNARDLIQLKESL 359
Query: 402 IRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYM 461
++P I+ + + +R +DP + + L + AL E L E +
Sbjct: 360 KQVPGIKQLVASLAHDKAKERAKR-IDPCGDVLE--LLEE--ALYENP-PLSVKEGN--L 411
Query: 462 ISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKE 521
I Y+ L ++ + + I L +Q + ++LK+ FG+ +TK
Sbjct: 412 IKDGYNQKLDEYRDASRNGKDWIARLEQQEREYTGI---RSLKVGFNKVFGYYIEVTKAN 468
Query: 522 EPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVT 581
+ + ++ +T + ++ +LK+ + + EL + +
Sbjct: 469 LHLLEEG---RYERKQTLTNAERYITPELKEKEALILEAENNICELEYELFTELREKVKQ 525
Query: 582 FSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDV 623
+ + LA +SELD L FA ++ + YT+P+ + +V
Sbjct: 526 YIPRLQQLAKQMSELDALQCFATISEN--RHYTKPEFSKDEV 565
Score = 39 (18.8 bits), Expect = 3.4e-47, Sum P(2) = 3.4e-47
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 317 FGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISD 376
+GL T G +L L+ + ++ + AR +V +D + Q LR+
Sbjct: 137 YGLALSDLTTGENLAVLIERLEDVISEIYSVGAREIVVSGSLDADTVAQ-LRERCGATIS 195
Query: 377 IE 378
IE
Sbjct: 196 IE 197
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 522 (188.8 bits), Expect = 3.6e-47, P = 3.6e-47
Identities = 125/323 (38%), Positives = 185/323 (57%)
Query: 537 ETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSEL 596
+T K+ ++ +LK+ ++ + +K+L + + + + A +EL
Sbjct: 497 QTLKNMERYITPELKEYEEKVLSSQGKALALEKQLWDELFDLILPKLHELQDFARAAAEL 556
Query: 597 DVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKS 656
DVL +FA+ A + YT P+++ ++G + +E RHP VE FI N L +
Sbjct: 557 DVLSNFAERAETLG--YTSPELSS-EIG-VKIEAGRHPVVERVSQTPFIANPVTLHNQRR 612
Query: 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGV 716
I+TGPNMGGKST++RQV + LMA +G FVP +RA+I D IF R+GA D G
Sbjct: 613 ML-IVTGPNMGGKSTYMRQVALITLMAHIGCFVPAERATIGPIDRIFTRIGASDDLASGR 671
Query: 717 STFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776
STFM EM ETA+IL AT +SL+++DE+GRGTSTYDG LAW+ E+L +++ A TLFAT
Sbjct: 672 STFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFAT 731
Query: 777 HFHELTALAHENANEFNTKQMVGVANYHVSA--HIDSTSRKLTMLYKVEPGACDQSFGIH 834
H+ ELT L + M GV N H+ A H D+ + ++ V+ GA +S+G+
Sbjct: 732 HYFELTQLP---------ELMSGVYNVHLDAIEHEDT----IAFMHAVQEGAASKSYGLQ 778
Query: 835 VAEFANFPESVVTLAREKAAELE 857
VA A P V+ A+ K +LE
Sbjct: 779 VAALAGVPARVIKAAKHKLHQLE 801
Score = 178 (67.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 78/349 (22%), Positives = 151/349 (43%)
Query: 260 ALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGL 319
A G L+ Y + + I +++ + LD+A R L + ++ + N +L +
Sbjct: 238 AAGCLMQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDN-TLAAV 296
Query: 320 MNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIER 379
++ T TA MG R+L W+ QPL D I AR V ++ TA+ + L + LK + DIER
Sbjct: 297 LDNTATA-MGSRMLQRWIHQPLRDHALILARQTAVNELLE-TAVHESLHEQLKALGDIER 354
Query: 380 LMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHL 439
+M L R A + +L Q+ LP ++ +L Q + +K L L + L
Sbjct: 355 IMARLALRTARPRDFARLRQALSLLPQLQLSLSQLSAPHT--VKLGQL--LGEFPQEQQL 410
Query: 440 NKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPV 499
+ A+V+ L + +G +I Y+ L + E + L + +
Sbjct: 411 LEH-AIVDNPPML--IRDGG-VIREGYNAELDEWRGLSEGASDYLVQLEAREKERTGIAT 466
Query: 500 DKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQK 559
LK+ G+ +++ + ++ + +T K+ ++ +LK+ ++
Sbjct: 467 ---LKVGYNRVHGYYIEVSRLQSNQVPLNYQRR----QTLKNMERYITPELKEYEEKVLS 519
Query: 560 VLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASS 608
+ +K+L + + + + A +ELDVL +FA+ A +
Sbjct: 520 SQGKALALEKQLWDELFDLILPKLHELQDFARAAAELDVLSNFAERAET 568
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 528 (190.9 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 139/398 (34%), Positives = 212/398 (53%)
Query: 461 MISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKK 520
+I+ YD L L+N + + + L +Q + +K+ G+ I++
Sbjct: 432 VIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKI---NTVKVGYNRIHGYYIEISRA 488
Query: 521 EEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAV 580
+ K+ T++I +T K+ ++ +LK D+ +KEL +++ T +
Sbjct: 489 QA----KQAPTEYIRRQTLKNVERYITPELKIFEDKVLSSRSRALAREKELYEQLLDTLI 544
Query: 581 TFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQD 640
+ A+ ++ LDVL + A+ A + + P D I +E RHP VE
Sbjct: 545 EKLIPLQQCASAIANLDVLNTLAERADTLN--FNAPQFC--DYPIIKIEAGRHPIVENVM 600
Query: 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRD 700
F+PND L K IITGPNMGGKST++RQ + L+A +GSFVP A + D
Sbjct: 601 TDPFMPNDTHLDE-KRRMLIITGPNMGGKSTYMRQTALITLLAYIGSFVPAKNAQLGPID 659
Query: 701 CIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAI 760
IF R+GA D G STFM EM ETA+IL AT+ SL+++DE+GRGTST+DG LA+A
Sbjct: 660 RIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEVGRGTSTFDGLSLAYAC 719
Query: 761 CEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLY 820
+L +++A LFATH+ ELTALA +T Q V N H+ A ++ K+ L+
Sbjct: 720 ASYLATKLKAFALFATHYFELTALA-------STLQ--AVKNVHLDA-VEH-EEKIIFLH 768
Query: 821 KVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858
+ G ++S+G+ VA+ A P SV+ AR+K ELE+
Sbjct: 769 ALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEELEN 806
Score = 175 (66.7 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 78/361 (21%), Positives = 162/361 (44%)
Query: 251 VSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDA 310
++ +A A G LL Y + + I+ + + +D+ R L ++ +
Sbjct: 232 ITHLPLAITAAGCLLQYVNYTQKSALPHIHSIQAEQNEEALFIDANTRRNLELI-TNLQG 290
Query: 311 NKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQH 370
+ SL L++ T T MG RLL W+ +PL D + R + V ++ ++ ++
Sbjct: 291 EEVHSLAWLLDHTATP-MGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNY-SEIYEN 348
Query: 371 LKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPL 430
L+ I D+ER++ + R A + +++L Q+ LP L Q Q ++L + L +
Sbjct: 349 LRHIGDLERIVARIALRSARPRDLMQLRQALGVLP----TLHQ---QLTNLPLNKQLQEI 401
Query: 431 ES-LTDDDHLNKFI--ALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSL 487
++ L D L + + A++E + + +G +I+ YD L L+N + + + L
Sbjct: 402 KNNLGLFDELFRLLKKAIIENPPIV--IRDGG-VIADGYDAPLDELRNMSTNSHQFLIDL 458
Query: 488 HKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTN 547
+Q + +K+ G+ I++ + K+ T++I +T K+ ++
Sbjct: 459 EQQERERTKI---NTVKVGYNRIHGYYIEISRAQA----KQAPTEYIRRQTLKNVERYIT 511
Query: 548 TKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLAS 607
+LK D+ +KEL +++ T + + A+ ++ LDVL + A+ A
Sbjct: 512 PELKIFEDKVLSSRSRALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERAD 571
Query: 608 S 608
+
Sbjct: 572 T 572
Score = 37 (18.1 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 162 LTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLT- 220
L +R ++ L+ +++ + L +G E ++ A++S+ + L GV+ T
Sbjct: 326 LQQRQNAVSTLLEKRNYSEIYENLRHIGDLERIVARIALRSARPRDLMQLRQALGVLPTL 385
Query: 221 ERKKTEFKTRDLVQDL 236
++ T +Q++
Sbjct: 386 HQQLTNLPLNKQLQEI 401
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 525 (189.9 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 174/594 (29%), Positives = 278/594 (46%)
Query: 289 SYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEIN 348
S+M LD+ + L ++ + SL ++ CT GKRLLH WL P DV+ I
Sbjct: 577 SHMVLDATTLSNLRII------GEEHSLLSTLDHCCTK-FGKRLLHHWLCAPSCDVSVIK 629
Query: 349 ARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIR 408
R D + + Q++R L + D ER + + G +QI ++ R
Sbjct: 630 ERQDAIGELIRMPTELQEVRALLAPMPDFERNLAQIHL--FGNKQIKQMDHPDSRAILFE 687
Query: 409 SAL---QQYEGQFSSLIKERYLDPLESLTDDDH------LNKFIALVETSVDLDQLENGE 459
L Q+ +G F +++K + L L H L + L E+ L
Sbjct: 688 EKLYNKQKLQG-FMAVLKG--FNDLTKLPTMFHQCKTTLLKRITQLPESGGSFPDLSKEL 744
Query: 460 YMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALK---LDKGTQFG---H 513
++++D +A K + + + + + A D V+K LK +++ FG
Sbjct: 745 QYFATAFDHDAAA-KTGVIAPQAGMDAEY-DAAMDSIGEVEKRLKTYLVEQERHFGCRIT 802
Query: 514 VFRITKK----EEPKIRKKLTTQFIVLETRKDGVK----FTNTKLKKLGDQYQKVLEEYK 565
F KK + P+ + LE + G K +T + + L Q E+ +
Sbjct: 803 YFGSDKKRYQLDVPESHASKANKSYTLEGQTKGKKPSRRYTTAETRALLKDMQHA-EDTR 861
Query: 566 NCQ-KELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVG 624
N K+L R+ + + +K ++ LDVL S A+ A ++ D
Sbjct: 862 NMVLKDLARRLFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQMVICVPELVSDADQP 921
Query: 625 DIILEGSRHPCVEAQDWVNFIPNDCKL-IRGKSWFQIITGPNMGGKSTFIRQVGVNILMA 683
I LE HPC A +IPN +L ++ ++TGPNMGGKST +R+VG+ ++MA
Sbjct: 922 FIQLEEGYHPCANAS---TYIPNGLELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMA 978
Query: 684 QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDE 743
Q+G+ +P +S+ D IF R+GA D L G STF+ E+ ET+ ILK AT SL+++DE
Sbjct: 979 QIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDE 1038
Query: 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY 803
LGRGT+TYDG +A ++ L ++ TLF+TH+H L H N M +
Sbjct: 1039 LGRGTATYDGTAIAASVVNFLAN-LKCRTLFSTHYHNLIDFFH-NDKRITLGHMACMVEN 1096
Query: 804 HVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
+A D T +T LYK GAC +S+G + A+ A P+ ++ A E + ++E
Sbjct: 1097 EDNA--DPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVE 1148
Score = 43 (20.2 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 96 RTDHTLELYEGSGSNWRL--VKSGTPGNLGSYEDVLFANNEMQDTPVI 141
+ + T++L EG+ +L ++S + SY+D++ N D PV+
Sbjct: 174 KLESTIQLAEGATFQEKLKNLQSNAKQD-ASYDDIV-TNTSNLDEPVV 219
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 513 (185.6 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 191/741 (25%), Positives = 357/741 (48%)
Query: 155 IGL-GYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSE-------CK 206
IG+ G T V+ F D + + +E+ ++ L E LLP++ + +E
Sbjct: 376 IGIVGVQPATGEVV-FDSFQDSASRSELETRILCLQPVELLLPSDLSEPTEMLIHRATAV 434
Query: 207 TLRD---ALTRCGVMLTE-----RKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAP 258
++RD + R M E ++ TEF +D+V + +GS + + ++ +
Sbjct: 435 SVRDDRIRVERMDNMYFEYSHAFQEVTEFYAKDIVDN-----KGS-QSLSGIIKLEKPVI 488
Query: 259 GALGALLSYAELLSDE---SNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFS 315
+L A++ Y + + E S N+ ++ +M ++ +R L +L+++TD S
Sbjct: 489 CSLAAIIRYLKEFNLEKVLSKPKNFKQLSGEME-FMTINGTTLRNLEILQNQTDMKTKGS 547
Query: 316 LFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV-DDTALRQDLRQHLKRI 374
LF +++ T T+ G+R L W+ QPLL + EINARLD V V ++++ + HL+++
Sbjct: 548 LFWVLDHTKTS-FGRRKLKKWVTQPLLKLREINARLDAVSEVVHSESSVFGQIESHLRKL 606
Query: 375 SDIERLMHNLEKRRAGLQQ---IVK-LYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPL 430
DIER + ++ ++ Q+ IVK LY + A+ + S+L++ L+
Sbjct: 607 PDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQALIPAVNSHVQ--SNLLQTCLLEIP 664
Query: 431 ESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQ 490
E L+ +H K + + + + D+ E + + S + + K+E + + +I + ++
Sbjct: 665 ELLSPVEHYLKILN-EQAAKNGDKTELFKDL--SDFPV-IKKRKDEIQEVTNKIQTHLQE 720
Query: 491 TASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKL 550
L P + + T G F I K + T ++ + + K +F + +
Sbjct: 721 IRKILKNPSAQYV-----TVSGQEFMIEVKNSAV--SCIPTDWVKVGSTKAVSRFHSPFI 773
Query: 551 KKLGDQYQKVLEEYK-NCQKELVNRVIQTAVTFSEIFKSLATMLSEL---DVLLSFADLA 606
+ ++ E+ +C E ++ + FSE + SL + L D + S A +A
Sbjct: 774 VENYRHLNQLREQLVLDCSAEWLDFL----ENFSEHYHSLCKAVHHLATADCIFSLAKVA 829
Query: 607 SSCPTPYTRPDINPPDVGDIILEGSRHPCVEA----QDWVNFIPNDCKLIRGKSWFQIIT 662
Y RP + + I+++ RHP ++ QD ++PN L ++
Sbjct: 830 KQ--GDYCRPTLQ--EERKIVIKNGRHPVIDVLLGEQD--QYVPNSTDLSEWSELSLVLV 883
Query: 663 GPNMGGKSTFIRQVG-VNILMAQVGSFVPCDRAS-ISVRDCIFARVGAGDCQLRGVSTFM 720
GP+ G + F + + +N ++A + FV S + V D F R+GA D +G STFM
Sbjct: 884 GPSRGIRGNFFKIIRLINHILALMALFVILAEESWLFVLDFFFIRMGAADNIYKGRSTFM 943
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780
+E+ +TA I++ AT +SL+I+DELGRGTST+DG +A+A EH + ++++ TLF TH+
Sbjct: 944 EELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPP 1003
Query: 781 LTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKL----TMLYKVEPGACDQSFGIHVA 836
+ L + + M + N S K+ T LY++ G+ +S+G++VA
Sbjct: 1004 VCELEKSYSQQVGNYHMGFLVNEDESKQDPGEEDKVPDFVTFLYQITRGSAARSYGLNVA 1063
Query: 837 EFANFPESVVTLAREKAAELE 857
+ A+ P ++ A K+ ELE
Sbjct: 1064 KLADVPGEILKKAASKSKELE 1084
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 515 (186.3 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 141/401 (35%), Positives = 206/401 (51%)
Query: 461 MISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKK 520
+I + YD L L+ E+ + + L + + LP L G H + I
Sbjct: 423 VIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLP-----NLKVGYNRIHGYFI--- 474
Query: 521 EEPKIR-KKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTA 579
E P+++ ++ +I +T K +F +LK D+ +K L +++
Sbjct: 475 ELPRVQAEQAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEELLERL 534
Query: 580 VTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGD---IILEGSRHPCV 636
+ + A+ L+ELDVL + A+ A + D+N P + + +E RHP V
Sbjct: 535 IGHLAPLQDSASALAELDVLANLAERALNL-------DLNRPRFVEHTCLHIEQGRHPVV 587
Query: 637 EAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASI 696
E F+ ND L + +ITGPNMGGKST++RQ + +L+A +GSFVP R +
Sbjct: 588 EQVLETPFVANDLAL-DADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCEL 646
Query: 697 SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGL 756
S+ D IF R+G+ D G STFM EM ETA+IL ATD+SL+++DE+GRGTST+DG L
Sbjct: 647 SLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSL 706
Query: 757 AWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKL 816
AWA E L RA TLFATH+ ELT L VAN H++A + ++
Sbjct: 707 AWAAAEDLART-RAFTLFATHYFELTVLPESQP---------AVANVHLNA--TEHNERI 754
Query: 817 TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
L+ V PG QS+G+ VA+ A P V+ ARE LE
Sbjct: 755 VFLHHVLPGPASQSYGLAVAQLAGVPSPVIQRAREHLKRLE 795
Score = 194 (73.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 80/352 (22%), Positives = 156/352 (44%)
Query: 256 IAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFS 315
+A GA G LL+YA+ + +R LD + LD A+ R L L+ + +
Sbjct: 229 LAIGAAGCLLAYAKETQRTALPHLRSLRHDRLDDTVILDGASRRNLE-LDINLSGGRENT 287
Query: 316 LFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRIS 375
L +++R C M RL+ WL +PL D + AR + + ++ ++L+ LK I
Sbjct: 288 LQSVVDR-CQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRF-ENLQPQLKEIG 345
Query: 376 DIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTD 435
D+ER++ + R A + + +L + LP +++A+ + E + + L +
Sbjct: 346 DLERILARIGLRNARPRDLARLRDALAALPDLQNAMTELEAPHLQALATT-IGTYPELAE 404
Query: 436 DDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDL 495
L K A+++ + + +G +I + YD L L+ E+ + + L + +
Sbjct: 405 --LLAK--AIIDNPPAV--IRDGG-VIKTGYDAELDELQALSENAGQFLMDLEAREKART 457
Query: 496 DLPVDKALKLDKGTQFGHVFRITKKEEPKIR-KKLTTQFIVLETRKDGVKFTNTKLKKLG 554
LP LK+ G+ + P+++ ++ +I +T K +F +LK
Sbjct: 458 GLP---NLKVGYNRIHGYFIEL-----PRVQAEQAPADYIRRQTLKGAERFITPELKAFE 509
Query: 555 DQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
D+ +K L +++ + + A+ L+ELDVL + A+ A
Sbjct: 510 DKALSAQSRALAREKALYEELLERLIGHLAPLQDSASALAELDVLANLAERA 561
Score = 40 (19.1 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 197 TEAVKSSECKTLRDALTRCGVMLTERKKTE 226
T+ +K C+ L A+ G +L K+T+
Sbjct: 216 TQDLKGFGCQNLTLAIGAAGCLLAYAKETQ 245
Score = 39 (18.8 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 24 FYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLG 69
++K + F+ D+Y E+A AK T TA Q G
Sbjct: 14 YFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSG 59
Score = 39 (18.8 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 408 RSALQQYEGQFSSLIKERYLDPLESLTDDD 437
R ++Q+ +G + L + L+P E L DD
Sbjct: 151 RFSVQEIKGWETLLAELERLNPAELLIPDD 180
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 462 (167.7 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 162/567 (28%), Positives = 277/567 (48%)
Query: 366 DLRQHLKRIS-DIERLMHNLEKRRAGLQQIVKLYQ--SSIRLPY-IRSALQQYEGQFSSL 421
DL+++L RI ++ LQ+IV+L++ ++ Y S L + +
Sbjct: 874 DLQRNLSRIYYKVQCTPKEFLNTMTSLQRIVELFKEINNNNSSYKFNSTLLNSIFKLQND 933
Query: 422 IKERYLDPLESLTDDDHLNK----FIALV--ETSVDLDQL---ENGEYMISSSYDTGLSA 472
K+ D + + +D L+K F++ + ET+ + + ++ ++ Y+ +
Sbjct: 934 NKDGDSDSFDYIGGEDKLSKRIKYFLSNINKETAKEYGTVGCDKSNLWVDLEKYEK-IRE 992
Query: 473 LKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQ 532
K + E +E++ ++ K +L P +L+ G + + E P K +
Sbjct: 993 TKEKIEQVEKEFKNVLKNIRKELSKP---SLEYHHMPGLGLEYLL---ELPPSFKAVPKS 1046
Query: 533 FI-VLETRKDGVKFTNTKLKKLGDQYQKVLEEYK-NCQKELVNRVIQTAVTFSEIFKSLA 590
+I V T+K L++L Q E K Q+ ++ + + +V +S +F +
Sbjct: 1047 WIKVNSTQKMARYHAPEVLEQLKILSQS-RETLKIQSQESWISFLGEFSVDYS-LFSNFV 1104
Query: 591 TMLSELDVLLSFADLASSCPTPYTRPD-INPPDVGDIILEGSRHPCVEA----QDWVNFI 645
+S LD L S A ++S Y RP + G I +E RHP VEA D +++
Sbjct: 1105 NKISNLDCLFSLAKVSSL--EGYIRPQFVKEKKDGGIQIENGRHPVVEAILSGSDG-SYV 1161
Query: 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFAR 705
PN +L IITGPNMGGKS+ +RQ + ++MAQVG FVP S+SV D I+ R
Sbjct: 1162 PNTIELRESACKSMIITGPNMGGKSSLLRQTALIVIMAQVGCFVPATSCSLSVFDAIYTR 1221
Query: 706 VGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765
+GA D G STF E+ ET+ ILK +T +L+I+DELGRGTST DG +A++ +++V
Sbjct: 1222 MGARDSIGTGKSTFFIELEETSDILKNSTQNTLVILDELGRGTSTNDGVAIAYSTLKYIV 1281
Query: 766 EEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHID-STSRKLTMLYKVEP 824
E ++ LF TH+ L L + + M G + S K+ LYK+
Sbjct: 1282 EVMKCYCLFVTHYPLLAQLELQYPTQVGNFHM-GYLEEKQDQQLQKSVIPKVIFLYKLVK 1340
Query: 825 GACDQSFGIHVAEFANFPESVVTLAREKAAEL-EDFTPSAVISDDA-KIEVGSKRKRISD 882
GA S+G+++A A P V+ A +K+ E+ E T A +SD + ++ ++ K I
Sbjct: 1341 GAAQNSYGLNIARLAGLPMEVIADALKKSNEMKESITRRANLSDGKDQQQIENEIKSIIK 1400
Query: 883 PNDMSRGAARAH---QFLKEFSDMPLE 906
+ +R ++ QF+++F + L+
Sbjct: 1401 NWNSNRTTLNSNDLLQFIEKFKSIQLK 1427
Score = 105 (42.0 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 41/185 (22%), Positives = 85/185 (45%)
Query: 177 HFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLT--ERKKTEFKTRDLVQ 234
+F+N+ S + K + T+A+ S L D G ++ E + + +
Sbjct: 680 YFSNLTSKCLKTYTKSTNVRTQAMDSQ----LYDYEYSLGKLIDFYEDESNNNNNNNNCE 735
Query: 235 DLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLD 294
D+ + V+ ++ + + G ++ L + + +L ESN+ + + + +++ L
Sbjct: 736 DVLKFVKSTLNKEQIICLGILLS--YLNEFIHFGSILKVESNF-----KAFRVSNHLVLP 788
Query: 295 SAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIV 354
+ + L +L +++D + SL LMNRT T G R+ W+ +PL + I R D V
Sbjct: 789 HSTIVNLELLVNESDNKEKGSLIWLMNRTSTFS-GSRMFINWICKPLNQLELIKERQDAV 847
Query: 355 QAFVD 359
+ V+
Sbjct: 848 EELVN 852
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 503 (182.1 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 117/327 (35%), Positives = 188/327 (57%)
Query: 533 FIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATM 592
FI +T + +++T ++LK L + + N + ++ ++ + ++ A
Sbjct: 491 FIHRQTLANSIRYTTSELKALESKIISARDAAINLEVKIFGQLCTCIIEVADKITMTAHA 550
Query: 593 LSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLI 652
++E+D+L SFA+LA YT+P ++ D + ++ RHP VE F+ ND L
Sbjct: 551 IAEIDMLTSFAELAIQYS--YTKPIVD--DSYEFNIKKGRHPVVERNG--KFVANDIDLS 604
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712
+ +ITGPNM GKSTF+RQ + ++A +GSFVP A I V D +F+RVGA D
Sbjct: 605 LMQR-VHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAQHAHIGVIDKVFSRVGASDNI 663
Query: 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPT 772
G STFM EM ETA+I+ ATD+S +I+DE+GRGT TYDG +AW++ E + ++
Sbjct: 664 ASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVIEQIHNVNKSRA 723
Query: 773 LFATHFHELTALAH--ENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQS 830
+FATH+HEL+ L EN F K ++ + K+ L+++ PG+ ++S
Sbjct: 724 IFATHYHELSKLDRYLENIKCFCMK-------------VEEWNGKVVFLHEIIPGSTNKS 770
Query: 831 FGIHVAEFANFPESVVTLAREKAAELE 857
+GIHVA+ A FP+SV+ A + ++L+
Sbjct: 771 YGIHVAKLAGFPQSVLDRAEDLMSKLK 797
Score = 210 (79.0 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 89/357 (24%), Positives = 170/357 (47%)
Query: 255 EIAPGALGALLSYAELLSDESNYGNYYIRK-YSLDSYMRLDSAAMRALNVLESKTDANKN 313
EIA G+LL Y + + + N K YS +M +D+AA+R L + +++ +
Sbjct: 233 EIA--VCGSLLEYVKA-TQKGNLPQLEFPKAYSKGDFMFIDAAALRNLELFCTQS-GDLE 288
Query: 314 FSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKR 373
SL ++ T TA G RLL L PL + IN RLDIV+ FV+D L + +R+ L+
Sbjct: 289 GSLISSIDYTITA-CGGRLLKRCLSAPLACSHAINRRLDIVEFFVNDRTLCRGVRETLRG 347
Query: 374 ISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE----GQFSSLIKERYLDP 429
I+DIER++ ++ + + + L + ++ + L +++ G F S + +Y D
Sbjct: 348 IADIERILTRIKVGKCSPKDLYALKLTLDKIFVLLDLLHKFDSSVVGDFCSRLG-KYDDL 406
Query: 430 LESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHK 489
++L D L+ +V+ +++G + I+ YD LS Q I L
Sbjct: 407 CKTLDD--------VLIPNNVN--NVKDGGF-INPDYDAQLSEYIYIQSYSNDLIQELRD 455
Query: 490 QTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK 549
+ + ++ ++LK+ G+ ++ I K FI +T + +++T ++
Sbjct: 456 KYRNITNI---QSLKILYNNILGYYVEVSSSY--LISDK---DFIHRQTLANSIRYTTSE 507
Query: 550 LKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLA 606
LK L + + N + ++ ++ + ++ A ++E+D+L SFA+LA
Sbjct: 508 LKALESKIISARDAAINLEVKIFGQLCTCIIEVADKITMTAHAIAEIDMLTSFAELA 564
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 504 (182.5 bits), Expect = 5.8e-45, P = 5.8e-45
Identities = 174/609 (28%), Positives = 296/609 (48%)
Query: 172 FLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRD-ALTRCG----VMLTERKKTE 226
F D+ + +ES ++ + E L+P++ +++E + LR+ AL+ + + +R+
Sbjct: 360 FKDNMSHSELESRILRIQPVEILVPSDLSETTE-RLLRNIALSSVQADDRIRIEKRESAM 418
Query: 227 FKTRDLVQDLDRLVRGSVEPV-RDLVSG-FEIAPG-------ALGALLSY-AELLSDESN 276
F+ + + RG R+ G + I G LG ++ Y E ++
Sbjct: 419 FEYPTALSIIKDFYRGGPHSAARNHEKGSYSICMGLESPIICCLGPVIQYLTEFKLEKIL 478
Query: 277 YGNYYIRKYSLD-SYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHM 335
+ ++ S D +M L +A M+ L +L ++T + SL +++ T T GKRLL
Sbjct: 479 LCSSSFKRLSSDPDHMLLSAATMKNLEILCNQTTGSVKGSLLWVLDHTQTL-FGKRLLRK 537
Query: 336 WLKQPLLDVNEINARLDIVQAFVD-DTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQI 394
W+ QPL V +I AR + V + ++++ ++ L R+ D+ER + ++ +R I
Sbjct: 538 WVSQPLKSVIDIQARQEAVAEILSSESSVLPSIQSLLTRLPDLERGLCSIYHKREFYLII 597
Query: 395 VKLYQSSIRLPYIRSALQQYEGQFSS-LIKERYLDPLESLTDDDHLNKFIALVETSVDLD 453
L + ++ L + A+Q Q SS L+K LD + L+ + K L E +
Sbjct: 598 SSLSRLNVELQALMPAIQS---QLSSPLLKTLLLDTPQLLSPAHNFLK--VLNEKAAKTG 652
Query: 454 QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGH 513
E + + + K E ES+ I ++ L P LD T G
Sbjct: 653 N--KTEMFVDLTDFPVIRKTKEEIESVLLDIMEHRREVRLLLKNP-----SLDYTTVSGQ 705
Query: 514 VFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYK-NCQKELV 572
F I K + + ++ + + K ++ + + + Q++ E+ +C E +
Sbjct: 706 QFLIEVKNS--MLSIVPADWVKISSTKVFGRYHTPFIVEKHRRLQQLREQLVIDCNHEWI 763
Query: 573 NRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSR 632
N +Q I + L+ +D L S A +A Y RP++ + I++ +
Sbjct: 764 N-FLQLFGDHYYILRKAVCHLATMDCLFSLAQVAKE--NNYCRPEVLE-EKSQILITAGK 819
Query: 633 HPCVEAQ--DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVP 690
HP + + D ++PND L IITGPNMGGKS++IRQV + +MAQ+GSFVP
Sbjct: 820 HPVITSLMGDQDQYVPNDTHLQGDGKRAMIITGPNMGGKSSYIRQVALVTIMAQLGSFVP 879
Query: 691 CDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTST 750
AS+ + D I+ R+GA D RG STFM+E+LET+ +L AT RSL+I+DELGRGTST
Sbjct: 880 AREASVGIVDGIYVRMGASDNISRGRSTFMEELLETSDVLACATSRSLVILDELGRGTST 939
Query: 751 YDGFGLAWA 759
+DG +A+A
Sbjct: 940 HDGIAIAYA 948
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 498 (180.4 bits), Expect = 1.1e-44, P = 1.1e-44
Identities = 177/606 (29%), Positives = 295/606 (48%)
Query: 286 SLDSYMRLDSAAMRALNVLESKTDA-----NKNFSLFGLMNRTCTAGMGKRLLHMWLKQP 340
S D +M +D+ ++ L +++ +A NK SLF + T TAG G RLL L QP
Sbjct: 161 SFD-HMNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTTKTAG-GTRLLRANLLQP 218
Query: 341 LLDVNEINARLDIVQAFVDDTALRQDLRQHLKRI-SDIERLM-H---------------- 382
L D+ IN RLD + + + L L Q L++ + +R++ H
Sbjct: 219 LKDIETINTRLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTEAVIGFE 278
Query: 383 NLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE-----GQFSSLIK-ERYLD---PLESL 433
N K + + I+ L + LP + L+ + + S+ + +RY + +
Sbjct: 279 NTRKSQNMISSIILLKTALDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEV 338
Query: 434 TDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTAS 493
DDD L+ + V + L+ G I D + E+ IH+L +
Sbjct: 339 IDDDVLHARVPFVARTQQCFALKAG---IDGFLDIARRTFCDTSEA----IHNLASKYRE 391
Query: 494 DLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKL 553
+ +LP LKL + G FRI +KE ++ KL +F + + ++ +L L
Sbjct: 392 EFNLP---NLKLPFNNRQGFFFRIPQKE---VQGKLPNKFTQVVKHGKNIHCSSLELASL 445
Query: 554 GDQYQKVLEEY----KNCQKELVNRVIQ--TAVTFSEIFKSLATMLSELDVLL-SFADLA 606
+ + E + C + L++ + + +A+T LA +L LD+++ SFA
Sbjct: 446 NVRNKSAAGECFIRTETCLEALMDAIREDISALTL------LAEVLCLLDMIVNSFAHTI 499
Query: 607 SSCPTP-YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPN 665
S+ P Y+RP++ D G + ++ RHP +E+ +F+ N + + ++ GPN
Sbjct: 500 STKPVDRYSRPELT--DSGPLAIDAGRHPILESIH-NDFVSNSIFMSEATNML-VVMGPN 555
Query: 666 MGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLE 725
M GKST+++QV + +++AQ+G +VP A+I V D IF R+G D STFM EM E
Sbjct: 556 MSGKSTYLQQVCLVVILAQIGCYVPARFATIRVVDRIFTRMGTMDNLESNSSTFMTEMRE 615
Query: 726 TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785
TA I++ T+RSLI++DELGR TS+ DG +AW+ CE+L+ ++A T+FATH L LA
Sbjct: 616 TAFIMQNVTNRSLIVMDELGRATSSSDGLAMAWSCCEYLLS-LKAYTVFATHMDSLAELA 674
Query: 786 HENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACD-QSFGIHVAEFANFPES 844
N V V +++V D +L +++ G +G+ +AE A P +
Sbjct: 675 TIYPN-------VKVLHFYV----DIRDNRLDFKFQLRDGTLHVPHYGLLLAEVAGLPST 723
Query: 845 VVTLAR 850
V+ AR
Sbjct: 724 VIDTAR 729
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 496 (179.7 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 157/498 (31%), Positives = 244/498 (48%)
Query: 366 DLRQHLKRISDIERLMHN---LEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
D +Q +R+ +ERL+++ LE+ R L + + + R+ Y RS + +L
Sbjct: 297 DRKQIEERLKAVERLVNDRVSLEEMRNLLSNVRDVERIVSRVEYNRSVPRDLVALRETL- 355
Query: 423 KERYLDPLESLTDDDHLNKFIALVETSVDL--DQLEN------GE-YMISSSYDTGLSAL 473
+ L + + K +A E VDL +E+ GE +I + + L
Sbjct: 356 --EIIPKLNEVLSTFGVFKKLAFPEGLVDLLRKAIEDDPVGSPGEGKVIKRGFSSELDEY 413
Query: 474 KNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQF 533
++ E E ++ ++ + + L++ FG+ +TK KI +
Sbjct: 414 RDLLEHAEERLKEFEEKERERTGI---QKLRVGYNQVFGYYIEVTKANLDKIPDDYERK- 469
Query: 534 IVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATML 593
+T + +F +LK+ + E + +KEL V + E+ ++ L
Sbjct: 470 ---QTLVNSERFITPELKEFETKIMAAKERIEELEKELFKSVCEEVKKHKEVLLEISEDL 526
Query: 594 SELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIR 653
+++D L + A + YT+P + D +I +G RHP VE + NF+ ND +
Sbjct: 527 AKIDALSTLA--YDAIMYNYTKP-VFSEDRLEI--KGGRHPVVE-RFTQNFVENDIYMDN 580
Query: 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQL 713
K F +ITGPNM GKSTFIRQVG+ LMAQ+GSFVP +A + V D IF R+GA D
Sbjct: 581 EKR-FVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTRMGARDDLA 639
Query: 714 RGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTL 773
G STF+ EM E A IL +T++SL+++DE+GRGTST DG +AWAI E L++ L
Sbjct: 640 GGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEELIKR-GCKVL 698
Query: 774 FATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGI 833
FATHF ELT L K V N + + + + +KV G D+S+GI
Sbjct: 699 FATHFTELTELE---------KHFPQVQNKTIL--VKEEGKNVIFTHKVVDGVADRSYGI 747
Query: 834 HVAEFANFPESVVTLARE 851
VA+ A P+ V+ A E
Sbjct: 748 EVAKIAGIPDRVINRAYE 765
Score = 200 (75.5 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 59/190 (31%), Positives = 98/190 (51%)
Query: 254 FEIAP---GALGALLSYAE--LLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKT 308
FE++P AL AL+ Y + +++++ N + S YM LDSA + L+++
Sbjct: 210 FELSPLALKALAALIKYVKYTMIAEDLNLKPPLL--ISQRDYMILDSATVENLSLIPG-- 265
Query: 309 DANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLR 368
D KN LF ++N T T MG RLL W+ PL+D +I RL V+ V+D +++R
Sbjct: 266 DRGKN--LFDVLNNTETP-MGARLLKKWILHPLVDRKQIEERLKAVERLVNDRVSLEEMR 322
Query: 369 QHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSL-IKERYL 427
L + D+ER++ +E R+ + +V L ++ +P + L + G F L E +
Sbjct: 323 NLLSNVRDVERIVSRVEYNRSVPRDLVALRETLEIIPKLNEVLSTF-GVFKKLAFPEGLV 381
Query: 428 DPLESLTDDD 437
D L +DD
Sbjct: 382 DLLRKAIEDD 391
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 481 (174.4 bits), Expect = 5.8e-44, Sum P(2) = 5.8e-44
Identities = 178/643 (27%), Positives = 295/643 (45%)
Query: 282 IRKYSLDSYMRLDSAAMRALNVLESKTD--------ANKNFSLFGLMNRTCTAGMGKRLL 333
+ + L+ +++LD+AA AL + ++ A + FS+FG+MN+ C MG+RLL
Sbjct: 174 VMEVPLNKFLKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK-CATPMGRRLL 232
Query: 334 HMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQ 393
W +P+LD+ ++ RL+ + F+ L LR+ LK + DI H L+K
Sbjct: 233 RSWFMRPILDLEVLDRRLNAISFFISSVELMASLRETLKSVKDIS---HLLKK----FNS 285
Query: 394 IVKLYQSSIRLPYIRS--ALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
L S+ +++S AL F + E + + + D + K + T +D
Sbjct: 286 PTSLCTSNDWTAFLKSISALLHVNKIFEVGVSESLREHMRRF-NLDIIEKAGLCISTELD 344
Query: 452 -LDQLENGEYMISSSYDTGLSALKNEQESLE----RQIHS-----LHKQTASDLD-LPVD 500
+ +L G ++ S + G L E E RQI+ L + +A +L+ P
Sbjct: 345 YVYELVIGVIDVTRSKERGYQTLVKEGFCAELDELRQIYEELPEFLQEVSAMELEHFPHL 404
Query: 501 KALKLDKGT----QFGHVFRI--TKKEEPKIRKKLTTQFIVLETRKDGVKFT--NTKLKK 552
KL Q G++ I K +E + + +F + + +F +K ++
Sbjct: 405 HKEKLPPCIVYIQQIGYLMCIFGEKLDETALNRLTEFEFAFSDMDGETQRFFYHTSKTRE 464
Query: 553 L----GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASS 608
L GD Y K+L+ ++ ++ ++ + FS ++ELD +LS A +A
Sbjct: 465 LDNLLGDIYHKILD----MERAIIRDLLSHTLLFSAHLLKAVNFVAELDCILSLACVAHQ 520
Query: 609 CPTPYTRPDINPPDVGDIILEGSRHPCVE-AQDWVNFIPNDCKLIRGKSWFQIITGPNMG 667
Y RP + + DI RH E A D FIPND + I IITGPN
Sbjct: 521 --NNYVRPVLTVESLLDI--RNGRHVLQEMAVD--TFIPNDTE-INDNGRIHIITGPNYS 573
Query: 668 GKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETA 727
GKS +++QV + + ++ +GSFVP D A++ + D IF +G+ STFM ++ +
Sbjct: 574 GKSIYVKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGS-KFMTAEQSTFMIDLHQVG 632
Query: 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP-TLFATHFHELTALAH 786
+L+ AT RSL ++DE G+GT T DG GL H P + TH LT L +
Sbjct: 633 MMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFATCAEPPRVVVCTH---LTELLN 689
Query: 787 ENANEFNTKQMVGVANYHVSA-HIDSTS---RKLTMLYKVEPGACDQSFGIHVAEFANFP 842
E+ + K + Y +S D+ S ++ LY++ PG S+G+H A A P
Sbjct: 690 ESCLPVSEK----IKFYTMSVLRPDTESANMEEIVFLYRLIPGQTLLSYGLHCALLAGVP 745
Query: 843 ESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPND 885
E VV A A L+ F + + + ++ S+ + D D
Sbjct: 746 EEVVKRA---AIVLDAFESNNNVDKLSLDKISSQDQAFKDAVD 785
Score = 58 (25.5 bits), Expect = 5.8e-44, Sum P(2) = 5.8e-44
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 134 EMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDD--SHFTNVESALVALGCK 191
EM+DT ++ ++G +G+ Y D + R L + EF ++ S FT + +V K
Sbjct: 3 EMEDTETEPQVYMACIQHGRRVGVSYYDCSVRQLHVLEFWEEDCSDFTLIN--MVKYQAK 60
Query: 192 ECLLPTEAVKSSE 204
++ + KS E
Sbjct: 61 PSIIYA-STKSEE 72
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 453 (164.5 bits), Expect = 9.7e-44, Sum P(2) = 9.7e-44
Identities = 152/531 (28%), Positives = 256/531 (48%)
Query: 281 YIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQP 340
Y + +S +M ++ + +L V + TD ++ SL +++T T G+RLL W+ +P
Sbjct: 490 YFQSFSTRQHMLINGTTLESLEVYRNATDHSEKGSLLWALDKTHTR-FGQRLLRKWIGRP 548
Query: 341 LLDVNEINARLDIVQAFVDD--TALRQDLRQHLKRI-SDIERLMHNLEKRRAGLQQIVKL 397
LLD + R+ V+ +++ TA L LK I +D+ER + + + +++
Sbjct: 549 LLDQQRLEERVSAVEELLNNQSTAKVDKLVNMLKSIKADLERSLIRIYYGKCTRPELLST 608
Query: 398 YQS--SIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTD--DDHLNKFIALVETSVDLD 453
Q+ I Y R G FSS + + L S++ HL+K A D
Sbjct: 609 LQTLQKISFEYARVKSPADTG-FSSTLLTSAIMTLPSISPMVTAHLSKINAEAARKDDKY 667
Query: 454 Q--LENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQF 511
LE E S + G++A+ EQ+ E + + A DL V G ++
Sbjct: 668 AFFLEQHETEDISEHKLGIAAV--EQDLDEHR-----SEAAKDLGKKVPVNYVTVAGIEY 720
Query: 512 GHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKF-TNTKLKKLGDQYQKVLEEYKNCQKE 570
+ + + K++ + + K +F T T L+ + ++ Q C +
Sbjct: 721 --LIEVPNTD----LKRVPASWAKISGTKKVSRFHTPTVLRLIAERDQHKESLASACDQA 774
Query: 571 LVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLAS----SCPT--PYTRPDI-----N 619
+ + Q A + + + + LS LD LLS + +A+ + PT P + P
Sbjct: 775 FSDLLSQIAGEYQPL-RDAVSSLSTLDCLLSLSTVAALPGYTKPTFLPSSHPSFLSITEG 833
Query: 620 PPDVGDIILEGSRHPCVEAQDWVNFI-----PNDCKLIRGKSWFQIITGPNMGGKSTFIR 674
+ + +L P + ++ PN + Q+ITGPNMGGKS++ R
Sbjct: 834 RHPIAEHLLPNGYIPFTMSLGTLSSSASSPDPNPTSPSGKPALAQLITGPNMGGKSSYTR 893
Query: 675 QVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT 734
V + +L+AQ+GSFVP S+++ D IF R+GA D +G STFM E+ ETA+IL+ AT
Sbjct: 894 AVALLVLLAQIGSFVPATSMSLTLSDAIFTRMGARDNLFKGESTFMVEVSETAAILRQAT 953
Query: 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785
RSL+++DELGRGTST+DG +A A+ E++V ++ LF TH+ +L +A
Sbjct: 954 PRSLVVLDELGRGTSTHDGRAIAGAVLEYVVRDVGCLMLFVTHYQDLAGVA 1004
Score = 95 (38.5 bits), Expect = 9.7e-44, Sum P(2) = 9.7e-44
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 815 KLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
++T LY + PG +S+G++VA A P V+ +A K++ELE
Sbjct: 1061 EITFLYDLAPGVAHRSYGLNVARLARIPRKVLEVAARKSSELE 1103
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 481 (174.4 bits), Expect = 1.3e-42, P = 1.3e-42
Identities = 192/756 (25%), Positives = 334/756 (44%)
Query: 155 IGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR 214
IG+ D + L EF+D +T +++ + + ++ + K L +AL
Sbjct: 68 IGIALHDTCFPEIHLCEFVDSREYTTLKTMINVHEAFDIVIQNGNEERGSTKLLGEALMT 127
Query: 215 C--GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYA-ELL 271
L F + + L L+ V V + +A GAL LL Y E
Sbjct: 128 AFPEASLQSISSKYFNSERGERQLQSLMNAEVSTVSEGCLRRTLALGALAVLLKYIHETR 187
Query: 272 SDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANK--NF------SLFGLMNRT 323
+ I++ ++ +D + +L ++++ DA+K F +L ++N T
Sbjct: 188 CVFFRVKSLRIKEMGVNDTCMIDFVSWESLEIVDAD-DASKARKFQMKQKRTLMSVLNHT 246
Query: 324 CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMH- 382
T G RLL + QP DV I +R + ++ + L+ LR+ L R +++R++
Sbjct: 247 VTTN-GYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAHELDRVIAM 305
Query: 383 --------NLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI-KERYL-DPLES 432
+ + A + QI+KL + + IR+ L + + + LI K +L DP
Sbjct: 306 CIQTSTSWTVRESEAKINQIIKLMHTLKVIQGIRTLLHSAKMKSNILIEKTEFLKDP--- 362
Query: 433 LTDDDHLNKFIALVETSVDLD------QLENGE-YMISSSYDTGLSALKNEQESLERQIH 485
D +N + V+ S+ LD L+N + Y I L + E + R +
Sbjct: 363 -RFDQIMNILVEKVDDSL-LDGKKNSLHLQNTKCYAIRHFVAVQLDLARQTYEEIIRNVE 420
Query: 486 SLH-KQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVK 544
++ A L + F + F +T++ E + F+ + + V
Sbjct: 421 ETGAREIAEYFHGNSSVRLSFSQSRGFHYTF-VTRQAESVT---IPRYFLDVFRNRTTVT 476
Query: 545 FTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL---S 601
F + K+ D+ ++V+ E +V +I+ + LS +D L +
Sbjct: 477 FNSRKVIAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLCGLAT 536
Query: 602 FADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQII 661
++DL +C +P P + RHP ++ D I ND L R + F II
Sbjct: 537 YSDLRDTC-----KPTFGP----SFSISQGRHPILDWDDSEKTITNDTCLTRDRR-FGII 586
Query: 662 TGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQ 721
TGPNM GKST+++Q +MAQ+G F+P + AS+ + + IF+R+G D +R S F
Sbjct: 587 TGPNMAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFAS 646
Query: 722 EMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781
EM + A+I++ A SL+++DEL R TST +G + +AICE +++ +++ T ATHF ++
Sbjct: 647 EMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLK-LQSYTFLATHFLDI 705
Query: 782 TALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
ALA N N + NYH D S K L + + +G + E +
Sbjct: 706 AALA----NYSNA-----IDNYHFLPQTDENSTKKHKLLRGQYRG--PLYGFELVELSTI 754
Query: 842 PESVV----TLAREKAAELEDFTPSAVISDDAKIEV 873
P+ V+ +LA E A +ED T S+ +I+V
Sbjct: 755 PDEVIEHAQSLATELRANVED-TERDYDSERRRIKV 789
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 481 (174.4 bits), Expect = 1.3e-42, P = 1.3e-42
Identities = 192/756 (25%), Positives = 334/756 (44%)
Query: 155 IGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR 214
IG+ D + L EF+D +T +++ + + ++ + K L +AL
Sbjct: 68 IGIALHDTCFPEIHLCEFVDSREYTTLKTMINVHEAFDIVIQNGNEERGSTKLLGEALMT 127
Query: 215 C--GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYA-ELL 271
L F + + L L+ V V + +A GAL LL Y E
Sbjct: 128 AFPEASLQSISSKYFNSERGERQLQSLMNAEVSTVSEGCLRRTLALGALAVLLKYIHETR 187
Query: 272 SDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANK--NF------SLFGLMNRT 323
+ I++ ++ +D + +L ++++ DA+K F +L ++N T
Sbjct: 188 CVFFRVKSLRIKEMGVNDTCMIDFVSWESLEIVDAD-DASKARKFQMKQKRTLMSVLNHT 246
Query: 324 CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMH- 382
T G RLL + QP DV I +R + ++ + L+ LR+ L R +++R++
Sbjct: 247 VTTN-GYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAHELDRVIAM 305
Query: 383 --------NLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI-KERYL-DPLES 432
+ + A + QI+KL + + IR+ L + + + LI K +L DP
Sbjct: 306 CIQTSTSWTVRESEAKINQIIKLMHTLKVIQGIRTLLHSAKMKSNILIEKTEFLKDP--- 362
Query: 433 LTDDDHLNKFIALVETSVDLD------QLENGE-YMISSSYDTGLSALKNEQESLERQIH 485
D +N + V+ S+ LD L+N + Y I L + E + R +
Sbjct: 363 -RFDQIMNILVEKVDDSL-LDGKKNSLHLQNTKCYAIRHFVAVQLDLARQTYEEIIRNVE 420
Query: 486 SLH-KQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVK 544
++ A L + F + F +T++ E + F+ + + V
Sbjct: 421 ETGAREIAEYFHGNSSVRLSFSQSRGFHYTF-VTRQAESVT---IPRYFLDVFRNRTTVT 476
Query: 545 FTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL---S 601
F + K+ D+ ++V+ E +V +I+ + LS +D L +
Sbjct: 477 FNSRKVIAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLCGLAT 536
Query: 602 FADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQII 661
++DL +C +P P + RHP ++ D I ND L R + F II
Sbjct: 537 YSDLRDTC-----KPTFGP----SFSISQGRHPILDWDDSEKTITNDTCLTRDRR-FGII 586
Query: 662 TGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQ 721
TGPNM GKST+++Q +MAQ+G F+P + AS+ + + IF+R+G D +R S F
Sbjct: 587 TGPNMAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFAS 646
Query: 722 EMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781
EM + A+I++ A SL+++DEL R TST +G + +AICE +++ +++ T ATHF ++
Sbjct: 647 EMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLK-LQSYTFLATHFLDI 705
Query: 782 TALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841
ALA N N + NYH D S K L + + +G + E +
Sbjct: 706 AALA----NYSNA-----IDNYHFLPQTDENSTKKHKLLRGQYRG--PLYGFELVELSTI 754
Query: 842 PESVV----TLAREKAAELEDFTPSAVISDDAKIEV 873
P+ V+ +LA E A +ED T S+ +I+V
Sbjct: 755 PDEVIEHAQSLATELRANVED-TERDYDSERRRIKV 789
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 365 (133.5 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 99/298 (33%), Positives = 151/298 (50%)
Query: 553 LGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTP 612
LGD Y K+L+ + ++LV RV Q ++ K++ +ELD +LS A +A
Sbjct: 472 LGDIYHKILDMERAIIRDLVCRVCQF---IPQLTKAV-NFAAELDCILSLAIVARQ--NN 525
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTF 672
Y RP + + +I + RH ++ F+PND K IR IITGPN GKS +
Sbjct: 526 YVRPILTEDSILEI--QNGRH-ALQEMTVDTFVPNDTK-IRSSGRINIITGPNYSGKSIY 581
Query: 673 IRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732
I+QV + + +A +GSFVP D A + + D IF +G+ STFM ++ + ++L+
Sbjct: 582 IKQVALVVFLAHIGSFVPADSAIVGLTDRIFCAMGSKSMTSEQ-STFMIDLHQVGTMLRH 640
Query: 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP-TLFATHFHELTALAHENANE 791
AT RSL ++DE G+GT T DG GL H + P L +TH ++ ++ +E
Sbjct: 641 ATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFTDYDCPPKVLLSTHLTQIFTESYLPQSE 700
Query: 792 FNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 849
+ V N D+ + LY++ PG SFG+H A+ A P VV A
Sbjct: 701 HIKCYTMSVLN--PDEQTDNED--VIFLYRLVPGQALLSFGLHCAQLAGVPSEVVQRA 754
Score = 161 (61.7 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 46/148 (31%), Positives = 75/148 (50%)
Query: 249 DLVSGFEI-APGALGALLSYAELLS--DESNYGNYY----IRKYSLDSYMRLDSAAMRAL 301
DL S ++ A G L A+L LL D+ G + + SLD +++LD+ A AL
Sbjct: 138 DLGSDVQVRAAGGLLAILDNERLLDTLDQMEGGASIAIDSVAQISLDKFLKLDATAHEAL 197
Query: 302 NVLESKTD--------ANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDI 353
+ + A + FS+FG++N+ C MGK LL W +P++D++ IN RL+
Sbjct: 198 QIFQVDKHPSYMGIGRAKEGFSVFGMLNK-CVTPMGKHLLRTWFLRPIIDIDVINNRLNT 256
Query: 354 VQAFVDDTALRQDLRQHLKRISDIERLM 381
+ F+ + LR LK + DI ++
Sbjct: 257 ISFFLCCEDVMSALRGTLKSVRDIPHML 284
Score = 42 (19.8 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 843 ESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPN 884
+S++ + + A L++ T + +D KI + I+ PN
Sbjct: 534 DSILEIQNGRHA-LQEMTVDTFVPNDTKIRSSGRINIITGPN 574
Score = 37 (18.1 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 85 FETIARDLLLERTDHTLELYE 105
++T+ +D L E D +YE
Sbjct: 368 YDTLVKDGLCEELDELRMVYE 388
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 402 (146.6 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 116/348 (33%), Positives = 169/348 (48%)
Query: 522 EPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVT 581
EP+ L T L T + F + LG+ V ++ + L + + VT
Sbjct: 836 EPESLSTLRT----LSTTRTTRTFHHPLWTSLGESLDHVRLRIRSEETALFSSLRSNVVT 891
Query: 582 FSEIFKSLATMLSELDVLLSFADLASSC----PTPYTRPDINPPD-VGD-IILEGSRHPC 635
+ A +L ELD+ S A LA+ P + N +G ++ G RHP
Sbjct: 892 LLIKLRRNALVLDELDIATSLARLATEQNLVRPILHDSSTTNGSQGMGTRTVIVGGRHPT 951
Query: 636 VEAQ---DWVNFIPNDCKL-IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPC 691
VE + F NDC + G+ +ITGPNM GKSTF+RQ + ++AQ+G +VP
Sbjct: 952 VEPSLLSRGMTFQKNDCLIGSPGQGAIWLITGPNMAGKSTFLRQNALITILAQMGCYVPA 1011
Query: 692 DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTY 751
D A + + D IF+RVG+ D STFM EM+ETA+IL+ AT RS +I+DE+GRGT+
Sbjct: 1012 DYAELGIVDAIFSRVGSADNLYADQSTFMVEMMETAAILRQATPRSFVIMDEIGRGTTPE 1071
Query: 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENA-----NEFNTKQMVGVANYHVS 806
DG +A+A HL+ + LFATHFH + + E + GVA Y
Sbjct: 1072 DGTAVAFASLHHLLTVNKCRGLFATHFHAVGDMLKEQGLVVEDGASSAGASWGVAMYCTD 1131
Query: 807 AHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAA 854
D S ++K+ G QS + VA A PE + +A++ A
Sbjct: 1132 VEEDE-SGGFVYVHKLRKGMNRQSHALKVARLAGLPEPAIKIAQQVLA 1178
Score = 128 (50.1 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 33/113 (29%), Positives = 57/113 (50%)
Query: 291 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINAR 350
M +D +MR+L + ++ + SL + RT T G RLL+ WL P ++ IN+R
Sbjct: 485 MTIDKNSMRSLEIKKTMREGFFAGSLLHAIRRTVTKS-GARLLNEWLSAPSTSLSVINSR 543
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIR 403
LD++ F+ + L + L R D +RL+ R +++L S+I+
Sbjct: 544 LDLITRFISNPDLSDAITVLLHRSHDTQRLVQKFALNRGDADDLLRL-ASTIK 595
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 469 (170.2 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 178/755 (23%), Positives = 345/755 (45%)
Query: 140 VIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEA 199
V+++++ + + +G+ + L L L F D S F + + +LP EA
Sbjct: 40 VVMSVYSP-KADSMDVGVSVLKLKTLELTLMSFCDSSTFVRTVNQIQVYEPTSIILP-EA 97
Query: 200 VKSSECKTLRDAL-TRCGVMLTER--KKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEI 256
S+ + L+ + + + ER K F D + L + + ++S ++
Sbjct: 98 QSHSQIEKLKYIIHSNISDKVRERFMKAKAFNAFDGMNSLKLYTDINESTLGQVISNRKL 157
Query: 257 APGALGALLSYAELLSDESNYGNYYIR-KYSL-DSYMRLDSAAMRALNVLESKTDANKNF 314
+ A A + Y +S + IR KY + ++ M +D+ +R L +++S ++
Sbjct: 158 SLAAANACIDYC--VSTKMFRVTNKIRLKYCMCENTMLIDTCTVRDLELVDSLSETGT-- 213
Query: 315 SLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRI 374
+L+ +N C MG R+L + QP N I R + VQ ++D +R LK
Sbjct: 214 TLYSFLN-CCLTKMGMRILRTSILQPSTHENSIILRSESVQELINDEDALISIRSSLKHT 272
Query: 375 SDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSL--IKERYLDPLES 432
D+E++ + R L Q ++ ++I L +++ LQ S+ + L ++
Sbjct: 273 CDLEKVFSTFLEPRGLLSQEQEI--NNIIL--LKTVLQNTFVIRKSIQNVSSHLLVQVKQ 328
Query: 433 LTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQT 491
+ + +++ +A++ + D Q N +++ + + N + R+I +
Sbjct: 329 ILEHENVQHLLAIINEYIRNDCQWANNSTELANQRANAVKSGVNGLLDVSRRIRETLLEE 388
Query: 492 ASDLDLPVDKALKLDKGTQF--GHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK 549
S+L + + L++ +F F I K L I ++ ++ T +
Sbjct: 389 VSELVAKLSEELEIFMEYRFEISRGFFIKIKGNNTDINSLPEVLINRVKKRKTIECTTIE 448
Query: 550 LKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSC 609
L K +Y ++ E +++ + + +++ I ++ + LD+L SFA S
Sbjct: 449 LMKQSSRYNDIVSEITTLNSTIIHDMYTSINSYTPILLMVSEAIGTLDLLCSFAYFTSLQ 508
Query: 610 PTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGK 669
YT P+ ++ + S HP + + NF+ N+ S +ITG NM GK
Sbjct: 509 KDSYTCPEF----AKEVTIMRSLHPILGGNN-SNFVANNYSCNHELSRIHVITGANMSGK 563
Query: 670 STFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASI 729
S ++RQ+ ++MAQ+G FVP + A + + + +++R+ + + + S+F +EM ETA I
Sbjct: 564 SVYLRQIAYLVIMAQMGCFVPAEYARMRIFNSLYSRISSDNVDINA-SSFSKEMSETAVI 622
Query: 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENA 789
L + SLI+IDELGRG+S DGF + AI E L+ + A + THF ++ + A
Sbjct: 623 LNDSDGDSLILIDELGRGSSLTDGFSICLAILEDLICK-EATVITTTHFRDIAQVL---A 678
Query: 790 NEFNTKQMVGVANYHVSAHIDS--TSRKLTMLYKVEPGACD-QSFGIHVAEFANF-PESV 845
N K V V+AH+ + T+ +L M Y + G +GI AE +N P+ +
Sbjct: 679 N----KSCV------VTAHMQTVETNGQLEMKYNLVLGRNGIVGYGIRFAEVSNLLPQEL 728
Query: 846 VTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRI 880
+ ++ A L P + D ++++ S+RK++
Sbjct: 729 IEDSKVVANILRSRKP---VHGDKELKLLSRRKKL 760
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 464 (168.4 bits), Expect = 8.8e-41, P = 8.8e-41
Identities = 116/320 (36%), Positives = 176/320 (55%)
Query: 533 FIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATM 592
F+ ++ + ++T +LK+L ++ E + + ++ + + A
Sbjct: 492 FVRRQSLANSTRYTTAELKELEERIVSAQSESADLEAQIFKGLCSRIADECQDIGLAAEA 551
Query: 593 LSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLI 652
++ELDVL + A++A Y RP ++ I+ G RHP VE +FI NDC L
Sbjct: 552 VAELDVLTTLAEVAVE--NNYVRPIVDDSKQFKIV-RG-RHPVVEVG--TDFIANDCDLS 605
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712
G S +ITGPNM GKSTF+RQ + ++A +GSFVP + A I V D IF+RVGA D
Sbjct: 606 EGNS-MSLITGPNMAGKSTFLRQNALIAVLAHIGSFVPAEHAHIGVIDKIFSRVGASDNI 664
Query: 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPT 772
G STFM EM+ETA+IL AT +SL+I+DE+GRGT+ DG +A A EH+ + ++
Sbjct: 665 ALGHSTFMVEMVETAAILNQATSKSLVILDEIGRGTAINDGLSIALAAIEHIHDVTKSRA 724
Query: 773 LFATHFHELTALA-H-ENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQS 830
+ ATH+HEL L+ H EN F + I+ ++ L+++ PG +S
Sbjct: 725 ICATHYHELPKLSSHFENIRFFCLR-------------IEEWKGEVVFLHELIPGISSRS 771
Query: 831 FGIHVAEFANFPESVVTLAR 850
+GIHVA A FP+ + A+
Sbjct: 772 YGIHVAGLAGFPKGALERAK 791
Score = 181 (68.8 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 95/431 (22%), Positives = 186/431 (43%)
Query: 176 SHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQD 235
S +++S + LG E L+ ++ +K + L RC + T ++ F ++ +
Sbjct: 158 SKLEDLDSEIQRLGPSELLI-SDKLKEQQSMELVLKRHRCAI--TSHNESFFDSKRAEKV 214
Query: 236 LDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDS 295
L V G V V+ L E+ A G+LL Y + S Y + +S++ +D
Sbjct: 215 LCG-VYG-VTTVQGLGDFEEVEVSACGSLLEYVRMTQRGSLPKLSYPKVRDSNSFVLIDG 272
Query: 296 AAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQ 355
A+R L + +++ K SL ++ T TA MG R+L +L P+ N IN R D V+
Sbjct: 273 PALRNLELFSTQSGEKKG-SLISTIDHTVTA-MGSRMLKRYLAFPVACHNVINGRQDAVE 330
Query: 356 AFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYE 415
FV + +L + +R + DIER++ ++ + + I L ++ ++ + + +
Sbjct: 331 FFVSNRSLCEVIRGVINGFPDIERILTRVKFSKCSPKDIHLLGRALSKIFELSRIISRST 390
Query: 416 GQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKN 475
S I L SL D L K I+ V + ++G + I+ + L+ L
Sbjct: 391 HAIISKI-------LVSLGDHRDLLKLISEVMLENNATITKDGGF-INPGCNERLAELAR 442
Query: 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIV 535
Q I L + + L +LK+ G+ ++ K+ + F+
Sbjct: 443 IQNDSGVLIQRLRDKYRA---LTGISSLKILSNNLLGYYIEVSSSY--KVSDE---SFVR 494
Query: 536 LETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595
++ + ++T +LK+L ++ E + + ++ + + A ++E
Sbjct: 495 RQSLANSTRYTTAELKELEERIVSAQSESADLEAQIFKGLCSRIADECQDIGLAAEAVAE 554
Query: 596 LDVLLSFADLA 606
LDVL + A++A
Sbjct: 555 LDVLTTLAEVA 565
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 462 (167.7 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 158/516 (30%), Positives = 257/516 (49%)
Query: 351 LDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSA 410
LD +Q D L ++ Q+ K++S ++ L LEK K+Y + I
Sbjct: 434 LDGLQKLRD--FLVEEYEQNPKKLSCLKNL---LEKFDIPKHLAEKIYNT------IDIE 482
Query: 411 LQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGL 470
Q G+ S I+E + +E T+ + N F+ + + + Y + ++ L
Sbjct: 483 EQTIPGEGSEEIEEP-TEVVED-TNSSYTNSFLEKYRSKQEGNTDAENFYSVKRDFNDEL 540
Query: 471 SALKNEQESLERQIHSLH---KQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRK 527
L +E LE + H L + D+D+ ++ K+ G ++ +V IT K +
Sbjct: 541 KILHDELSELEVEEHKLWSKLRNVLDDIDVKLNIGKKIVLG-RYNNVILITGKTSSISKA 599
Query: 528 KLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVT--FSEI 585
+L +K + + +T+ + E +++++ +++ VT F E
Sbjct: 600 SAKLDGDILYEKKMSLVYRSTEWNDIQHLILDKKEAILLVERKIIEE-LKSEVTRRFPE- 657
Query: 586 FKSLATMLSELDVLLSFADLASSCPTPYTRPD-INPPDVGDIILEGSRHPCVEA--QDWV 642
F+ LA + LDV S A +A +T P I P + +EG RH VE+ +D
Sbjct: 658 FRELAGLADFLDVTSSLAIVAEE--NNWTCPKLIKTPRLS---VEGGRHVVVESSLKDSG 712
Query: 643 N-FIPNDCKL-IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRD 700
N FIPND K+ G W +I+GPNMGGKST++RQ + +++AQ+GSFVP ++A+I + D
Sbjct: 713 NMFIPNDSKMGTDGTLW--VISGPNMGGKSTYLRQNALIVILAQIGSFVPAEKATIGLVD 770
Query: 701 CIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAI 760
IF R+GA D +STFM EM+E ++IL AT SL I+DE+GRGTS +G +A+A
Sbjct: 771 KIFTRIGATDDLFNDLSTFMVEMVEVSNILTNATPSSLAIVDEIGRGTSGKEGLAIAYAT 830
Query: 761 CEHLVEEIRAPTLFATHF-HELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTML 819
L++ + TLFATHF EL L AN + K + V + D+ + +
Sbjct: 831 LLSLLQVNKCRTLFATHFGKELEQLLV--ANNIDQKN-IRYFRTRVLENGDN-EKGFVID 886
Query: 820 YKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAE 855
+ +EPG ++S + VA A FPE+ + A EK +
Sbjct: 887 HTLEPGISERSHALDVARMAGFPENALKAA-EKVLD 921
Score = 158 (60.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 85/366 (23%), Positives = 156/366 (42%)
Query: 105 EGSGSNWRLVKSG-----TPGNLGSYEDVLFANNEMQDTPVIVALFPNFR----ENGCTI 155
+GS +N LV TPG L D F N + V ++ P+ + +
Sbjct: 137 QGSKTNQNLVHRKISRIITPGTL---IDESFLNFNENNYLVAISFAPSSLSLPPDPQMKV 193
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC 215
GL + D++ +G F+ + + S + + E LLP K + L
Sbjct: 194 GLSWTDIS---VG-ESFVQLTTLGELSSDIARINPSEILLP----KEFQDHNLHLGQWYS 245
Query: 216 GVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAP-GALGALLSYAELLSDE 274
+ +R + + +L S++ VR + F AL ++SY + +
Sbjct: 246 PLQELKRYIIRYHSTTNYNELKLQYHDSIQKVRRHLETFSPREQAALNMIMSYMSINLPD 305
Query: 275 SNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFS---LFGLMNRTCTAGMGKR 331
+ +Y ++ +++DS AL + E +T A + S L ++ RTCT+ G R
Sbjct: 306 VDILMTLPTRYFNETCLQMDSRTREALELTE-RTIAGRTSSVGSLVSVIKRTCTSS-GTR 363
Query: 332 LLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAG- 390
LL W+K P LD +I R V+ F+ + L+ RQHL+++ D R + L R
Sbjct: 364 LLTEWIKSPSLDTKDIEKRQSFVKMFLKNQHLKIVTRQHLQQLGDFIRNLQKLVVGRGDP 423
Query: 391 LQQIVKLYQSSIRLPYIRSAL-QQYEGQFSSLIKERYLDPLESLTDDDHLNKFIA-LVET 448
+ Q+V + L +R L ++YE + L L++L + + K +A +
Sbjct: 424 VNQLVYAASTLDGLQKLRDFLVEEYEQN------PKKLSCLKNLLEKFDIPKHLAEKIYN 477
Query: 449 SVDLDQ 454
++D+++
Sbjct: 478 TIDIEE 483
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 380 (138.8 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 133/456 (29%), Positives = 214/456 (46%)
Query: 470 LSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKL 529
L K + + I+ L K LP LKL G+ + + K + L
Sbjct: 605 LDVCKKTYKEITDDINKLTKYYKEQFKLP---QLKLQHCQTKGYYYSLPCKNKALFH--L 659
Query: 530 TTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVT-FSEIFKS 588
F+ R + +L L + ++V EE + + ++I+ + SE++ +
Sbjct: 660 PNVFVRSSYRNQKYYLFSEELTSLSRRSREVFEEIIILSAQSIEKLIEFYRSHISELY-N 718
Query: 589 LATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCV-----EAQDWVN 643
++ +S LD L+S A L S P+I G + ++ HP + + +
Sbjct: 719 ISESISLLDFLVSGA-LYSLQLDQSVCPEIFNGK-GPLAIKSGYHPLQLKKSKKKESFST 776
Query: 644 -FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCI 702
F+PND LI + FQ+I G NM GKST+I+QV + ++A +G F+P + A++ + D I
Sbjct: 777 CFVPNDT-LINETASFQLIHGCNMSGKSTYIQQVALLTIVAHIGYFLPAEFATVPIVDQI 835
Query: 703 FARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICE 762
+R+G D STFM EM E + IL+ T+ SL+IIDELGRGTS DG +AW+I E
Sbjct: 836 ISRLGTSDNIQSNASTFMTEMKEISYILENTTESSLVIIDELGRGTSNMDGSSIAWSISE 895
Query: 763 HLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKV 822
HL I TLF TH+ +L LA N + V ++ VS DS+ K L+
Sbjct: 896 HL-SMIGCYTLFVTHYQQLLNLATFYPN-------IRVYHFQVSKD-DSSGLKYNYLFSE 946
Query: 823 EPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISD 882
+ D S+G+ AE A V+ + A + + S S++ +I + + I+
Sbjct: 947 GVSSID-SYGVETAELAGIDSKVI----QSAKTIRNLLESK--SNNNQINPNTNNQSINQ 999
Query: 883 PNDMSRGAARAHQFLKEFSDMPLETMDLKEALERVK 918
+ SR + + Q L L + LK L ++K
Sbjct: 1000 YHHPSRDSYQLLQKLLNLKFSKLSDVQLKNYLLKLK 1035
Score = 137 (53.3 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 95/469 (20%), Positives = 193/469 (41%)
Query: 70 TGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLG-SYEDV 128
T S +SS+ SK TI + + +T++ N L KSG+ N S
Sbjct: 186 TNSKPMSSLLNSKKSTSTINTPKINKTFPNTIQ-------N-SLRKSGSVNNENNSINSN 237
Query: 129 LFANNEMQDTPVIVALFPN-FRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
+ N + IVA+ N RE IG ++ + +F D + ++ + L
Sbjct: 238 IIKNKTKNHSGSIVAICENRTRE----IGYSSYNIESGEIETGQFCDSQTYFHLYTKLYI 293
Query: 188 LGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRL-VRGSVEP 246
L ++P K + +A ++ +K F D + +++ + +
Sbjct: 294 LNPSIIVIPPIEQNREMVKLIENAYPNVKIIPIIKKL--FNENDGISLMNQYCLIDKISI 351
Query: 247 VRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIR-KYS-LDSYMRLDSAAMRALNVL 304
+ ++ + AL+ Y E D + IR KYS ++ M++D+ ++ L ++
Sbjct: 352 IEKFTKDKVLSLSSFNALIKYLE--QDGIMFVKNCIRIKYSGSENSMQIDAETIKNLELI 409
Query: 305 ESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALR 364
S D ++N +L+ +N T T+ G RLL + QP D I R + ++ + + +
Sbjct: 410 HSSKDGSRNCTLYQSINNTSTS-QGSRLLISAIVQPSNDFETIKHRQNAIKQLLSNQRVV 468
Query: 365 QDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKE 424
L L +I DI++ + ++ Q +K ++SI+ +I ++ F L K
Sbjct: 469 FTLTPLLSKIQDIDKTLLLFSQQNK--QVTIKSIETSIKC-FI-----DFKNIFELLPKI 520
Query: 425 RYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQI 484
L ++ D+ LN + + ++ +++ + + LS K +Q+ +++
Sbjct: 521 SNLLNSGTICDNPMLNLIKGKLNNETNNILIKESSKVLNVNLNFQLS--KQDQQHQQKEQ 578
Query: 485 HSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQF 533
+Q + ++ + +K D V + T KE KLT +
Sbjct: 579 QQQQQQQVNKINYKIIMYIK-DGVNGLLDVCKKTYKEITDDINKLTKYY 626
Score = 42 (19.8 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 391 LQQIVKLYQSSIRLPYIRSALQQYEGQFSSL 421
+ ++ K Y+ +LP ++ Q +G + SL
Sbjct: 619 INKLTKYYKEQFKLPQLKLQHCQTKGYYYSL 649
Score = 39 (18.8 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 5/19 (26%), Positives = 14/19 (73%)
Query: 272 SDESNYGNYYIRKYSLDSY 290
+D+++Y NY ++ +L+ +
Sbjct: 81 ADKNSYNNYIYKEITLNDF 99
Score = 39 (18.8 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 1 MDDEQNKLPE--LKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENAT--FI-A 55
+++E N + +K K G S N TR + + Y GE T F +
Sbjct: 227 VNNENNSINSNIIKNKTKNHSG--SIVAICENRTREIGY---SSYNIESGEIETGQFCDS 281
Query: 56 KTYYHTTTALRQLGTGSDALSSVSVSKNMFETI 88
+TY+H T L L + + ++ M + I
Sbjct: 282 QTYFHLYTKLYILNPSIIVIPPIEQNREMVKLI 314
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 455 (165.2 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 180/758 (23%), Positives = 345/758 (45%)
Query: 51 ATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFET-IARDLLLERT----DHTLELYE 105
++FI+ Y++ +A + S + S+ T I+ L ++T + T E E
Sbjct: 7 SSFISTNYFNLRSAANSSNSISKPSTKKSIRNQKSPTNISSWALKKKTLQIAETTWENNE 66
Query: 106 GSGSNWRLVKSGTPGNLGSYEDVLFANNEMQDTP----VIVALFPNFRENGCTIGLGYVD 161
++ + +G+ + + ++ N P V+ ++ R+ IGL ++
Sbjct: 67 KDSTHSHYLMTGSMASRTATSLSRYSTNASLLGPSIDCVLCCIYEVPRDISTRIGLCIIN 126
Query: 162 LTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECK--TLRDALTRCGVML 219
+ L++F+D + V L E L+P+ ++ + K T+ V +
Sbjct: 127 CNTGQMYLSDFMDSQIYIRVVHKLQIYQPTEILIPSSSLAPTVSKLATMIKFNVAETVKI 186
Query: 220 TERKKTEFKTRDLVQDLDRLVRGSVEP---VRDLVSGFEIAPGALGALLSYAELLSDESN 276
E + F ++D + + + + + + +++ A A A +SY E + +S+
Sbjct: 187 EEGSRKCFNSQDGLAAITKYLMDDTKKDLKIEEIIDK-TFALCAASAAISYMEEIISKSS 245
Query: 277 YGNYYIRKYSL-----DSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKR 331
RK + ++ M +DS +R L ++E+K D N SL+ ++ T T MG+R
Sbjct: 246 RNLNAFRKLRIQFEGTENTMLIDSKTVRGLELVENKLDKN-GISLWKFLDTTSTK-MGQR 303
Query: 332 LLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEK-RRAG 390
L + QPL D I RL+ ++ + L Q LR +K + D+++L L +
Sbjct: 304 SLRNSILQPLTDRGSIEMRLEALEELKANDDLLQKLRLEMKSLPDLDKLFSRLLCINHSA 363
Query: 391 LQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSV 450
++ ++ + ++S + LI+ R + + + ++D + + L+ + +
Sbjct: 364 IKPDQRINYVLLLKETLQSVKSLKDALNDQLIQSRLISETKKIFNNDAIMEIEKLINSCI 423
Query: 451 DLDQL-ENGEYMISSSYDTGLSALKNEQESLERQIHS-LHKQTASDL-DLPVDKALKLDK 507
+ D + + + + + + N + RQI+ + ++ ++ DL + LD
Sbjct: 424 NEDCVWASSAIQLLNQRSYAVKSDSNGLLDVSRQIYKEVKEEFFREVEDLTAKNKINLDH 483
Query: 508 G--TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYK 565
+ G RI ++E L FI +K+ ++ T + K + ++V+EE
Sbjct: 484 NYDSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVMEEIL 543
Query: 566 NCQKELVNRVIQTAVT-FSEIFKSLATMLSELDVLLSFA-DLASSCPTPYTRPDINPPDV 623
+E V+ ++ T SE+F +A ++ LD++ SF +L + YT P
Sbjct: 544 LLSEETVDELLDKIATHISELFM-IAEAVAILDLVCSFTYNLKEN---NYTIPIFT---- 595
Query: 624 GDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA 683
++++ SRHP +E + NF+PN + S QIITG NM GKS +++QV + +MA
Sbjct: 596 NNLLIRDSRHPLLE-KVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMA 654
Query: 684 QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDE 743
Q+GS +P S V + ARV +L S F EM E A L +L+I+DE
Sbjct: 655 QMGSGIPALYGSFPVFKRLHARVCNDSMELTS-SNFGFEMKEMAYFLDDINTETLLILDE 713
Query: 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781
LGRG+S DGF ++ A+ EHL+ A +THF ++
Sbjct: 714 LGRGSSIADGFCVSLAVTEHLLRT-EATVFLSTHFQDI 750
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 307 (113.1 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 70/193 (36%), Positives = 108/193 (55%)
Query: 680 ILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLI 739
IL + G +VP ++ S+ D IF R+GAGD + G STF EM E + + T S+
Sbjct: 938 ILQLKQGCYVPAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNSIMYGTYNSIA 997
Query: 740 IIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVG 799
I DELGRGTST+DG +A+ I ++ +E+I++ +FATHF L NE + +
Sbjct: 998 IFDELGRGTSTFDGVAIAFGILKYFIEKIQSRCIFATHFFLLI-------NELRFYKEIS 1050
Query: 800 VANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 859
YH+ + D+ S+KL YK++ G + SFGI +A+ +SV+ LA++K E E+
Sbjct: 1051 F--YHMEYYYDNKSKKLIFKYKLKQGNAESSFGIDLAKIVGIEQSVLNLAQKKQLEFENS 1108
Query: 860 TPSAVISDDAKIE 872
A + I+
Sbjct: 1109 LEYAEVEKQQTIK 1121
Score = 135 (52.6 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 57/213 (26%), Positives = 100/213 (46%)
Query: 234 QDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAE-LLSDES--NYGNYYIRKYSLDSY 290
Q+L R +R + E +R V + A AL SY + L ES N Y + +
Sbjct: 445 QEL-RDIRTNDE-IRGQVINLKYA--ALAGFFSYMDSTLQLESILNSSEYVECDFDNKQF 500
Query: 291 ---MRLDSAAMRALNVLESKTDA---------NKNFSLFGLMNRTCTAGMGKRLLHMWLK 338
M LDS A++ L + E+ A K +L ++ T T GKR+L W+
Sbjct: 501 SQRMILDSQALQHLEIFENSQTALTTTFQQVDQKKGTLLNYLDYTKTP-YGKRMLKKWVC 559
Query: 339 QPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVK-- 396
PL+D++ IN R D ++ ++ A++ + + R +DIERL ++ + + K
Sbjct: 560 SPLIDISAINDRYDAIEDIQNNLAMKDKFQYGIARYADIERLCSSIYRYSVKQKHAEKAV 619
Query: 397 LYQ--SSIRLPYIRSALQQYEGQFSSLIKERYL 427
+Y+ SS RL ++ + + + LI+E ++
Sbjct: 620 MYENISSARLKEFKNLINSMK-EIEKLIEETFM 651
Score = 119 (46.9 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 69/274 (25%), Positives = 125/274 (45%)
Query: 428 DPLESLTDDDHLNKFIALVETSVDLDQLEN--GEYMISSSYDTGLSALKNEQESLERQIH 485
DP S D ++ FI ++E + LD E G+Y+ G E +S+ QI
Sbjct: 673 DPKLS-GDLPKVSSFIKVLEDIIVLDSKEKIAGKYIEQPVPKDGFC---QEYDSIRLQI- 727
Query: 486 SLHKQTASDLDLPVDKALKLD-KGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKD-GV 543
K +LD +++ LK+ K + F ++ + ++ K L F ++ D +
Sbjct: 728 ---KAYQDELDQYLEQ-LKVKFKTNDISYAFLNNRQYDIQVNKTL---FDKIQKPADFSL 780
Query: 544 KFTNTKLKKLGDQY--QKV--LEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVL 599
+ + ++ ++ +KV +EE + KE+++ T F +I L ++S
Sbjct: 781 QSHSGSFQRFTSRFTSEKVAFIEELEEQLKEILSNFCVTV--FRDIVAELDCLISISHAC 838
Query: 600 LSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKL--IRGKSW 657
+ AD C P + N + + +G R+P + D + +PND L I G +
Sbjct: 839 FTMAD-GVMC-RPVIKFAKNQKETFFYLKQG-RNPNLIQLD-LKQVPNDIILGNIAGMNA 894
Query: 658 ---FQIITGPNMGGKSTFIRQVGVNILMAQVGSF 688
I+TGPNMGGKST +R ++ ++AQ+G +
Sbjct: 895 QPNIMILTGPNMGGKSTTLRLFCLSAILAQIGIY 928
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 446 (162.1 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 152/563 (26%), Positives = 260/563 (46%)
Query: 302 NVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV--D 359
+V + + + SLFG++NR C G++LL +W +P D+ E+N+RLD++Q F+
Sbjct: 131 SVYKVASGLKEGLSLFGILNR-CRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQ 189
Query: 360 DTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFS 419
+ + Q L + L I ++ ++ ++ LY++ +R A +
Sbjct: 190 NLDMAQMLHRLLGHIKNVPLILKRMKLSHTKTSDWQVLYKTVYSALGLRDACRSLP---Q 246
Query: 420 SLIKERYLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQE 478
S+ + + D + +DD L+ +L+ VD + L + + + D + K
Sbjct: 247 SI--QLFQDIAQEFSDD--LHHIASLIGKVVDFEGSLAENHFTVLPNIDPDIDEKKRRLM 302
Query: 479 SLERQIHSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVL 536
L + + ++ +LD +P + + + R+ E + F+ L
Sbjct: 303 GLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMAEASDFEIEGLDFMFL 362
Query: 537 ETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
K + TK L L GD + + ++ +L +V+ A F+ + LA S
Sbjct: 363 SEGKLHYRSARTKELDALLGDLHCDIRDQETLLMHQLQCQVLARAAVFTRVL-DLA---S 418
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPN--DCKLI 652
LDVLL+ A A Y+RP +P +G + ++ RHP +E F+PN +C
Sbjct: 419 RLDVLLALASAARDYG--YSRPRYSPQLLG-VRIQNGRHPLMELCART-FVPNSAECGGD 474
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712
RG+ ++ITGPN GKS +++QVG+ MA VGSFVP + A I D IF R+ + +
Sbjct: 475 RGR--VKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESI 532
Query: 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAP 771
G+STFM ++ + A + AT +SL++IDE G+GT+T DG L A+ H L P
Sbjct: 533 SLGLSTFMIDLNQVAKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCP 592
Query: 772 TLF-ATHFHELTALAHENANEFNTKQMV--GVANYHVSAHIDSTSRKLTMLYKVEPGACD 828
+F AT+F L L Q++ G +++ L Y+V G
Sbjct: 593 HIFVATNFLSLVQL-----------QLLPQGPLVQYLTMETCEDGDDLVFFYQVCDGLAK 641
Query: 829 QSFGIHVAEFANFPESVVTLARE 851
S H A A P+ ++T +E
Sbjct: 642 ASHASHTAAQAGLPDQLLTRGKE 664
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 450 (163.5 bits), Expect = 9.1e-39, P = 9.1e-39
Identities = 124/369 (33%), Positives = 182/369 (49%)
Query: 494 DLDLPVDK---ALKLDKGTQFGHVFR-ITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK 549
DL +DK ALK K +F V + I + E PK K+ + + ++ +
Sbjct: 808 DLQSLLDKQKAALKC-KSLKFTDVGKEIYQIEAPK-STKVPKDWRQMSATSAVKRYYFRE 865
Query: 550 LKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSC 609
L +L + Q+ E + K++ R + I+ ++S+LD L+ A +SS
Sbjct: 866 LDELVRELQEAEETHSQIVKDVAARFFKRFDVDYAIWIQAIRIISQLDCLICLAKASSSL 925
Query: 610 PTPYTRPDINPPDVGDIILEGSRHPCV-EAQDWVNFIPNDCKLIRGKSWFQIITGPNMGG 668
P RP + + E RHPC+ D +FIPND KL + ++TG N G
Sbjct: 926 GEPSCRPTFVDHERSVVEFEELRHPCMLNTVD--DFIPNDIKLGGDDANINLLTGANAAG 983
Query: 669 KSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETAS 728
KST +R + ++MAQ+G +VP A ++ D I +R+GA D STF E+ ET
Sbjct: 984 KSTVLRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKK 1043
Query: 729 ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHEN 788
IL AT RSL+I+DELGRGTS+YDG +A A+ H+ I FATH+H L A EN
Sbjct: 1044 ILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSL-ATEFEN 1102
Query: 789 ANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTL 848
E K+M +D R++T LY++E G + SFG+H A + V+
Sbjct: 1103 HPEIRAKRM--------QIQVDDAKRRVTFLYRLEDGVAEGSFGMHCAAMCGISDRVIER 1154
Query: 849 AREKAAELE 857
A A E E
Sbjct: 1155 AEVAAKEWE 1163
Score = 258 (95.9 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 133/589 (22%), Positives = 249/589 (42%)
Query: 142 VALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVK 201
VA+ + N G+ +VD +++F DD T E+ + +E LL +
Sbjct: 460 VAIKESTINNHPAFGIAFVDAATGQFFISQFEDDVDLTKFETFVAQTSPRELLLEKSNIS 519
Query: 202 SSECKTLRDALTRCGVMLTERKKTEF---KT--RDL-VQDLDRLVRGSVE----P-VRDL 250
+ + L++ + + + +EF +T R+L D ++ G E P D
Sbjct: 520 TKALRILKNNTSPTTIWNYLKPDSEFLDPETTRRELSCGDYFKVADGGDETEVWPEALDK 579
Query: 251 VSGFEIAPGALGALLSYAELLSDESNY---GNY-YIRKYSLDSYMRLDSAAMRALNVLES 306
++ A+GAL+ Y +L E + GN+ + D + LD ++ L V +
Sbjct: 580 SRDKDLLMSAMGALVHYLRVLKLERSLLSQGNFEWYNPIHRDGTLVLDGQSLINLEVFSN 639
Query: 307 KTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQD 366
+ +LF L+NR C GKRL W+ PL ++ +IN RLD V D ++ +
Sbjct: 640 SVNGGPEGTLFNLLNR-CITPFGKRLFRQWVCHPLCNIKKINERLDAVDMLNADRSILEQ 698
Query: 367 LRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERY 426
+ ++ D+ERL+ + + V++ + ++ Y S L + G + L+ +R
Sbjct: 699 FSSLMSKMPDLERLISRIHAGVCKAEDFVRVLEGFEQIEYAMSMLSAFGGG-NGLV-DRL 756
Query: 427 LDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQIHS 486
+ S+ D L + + +++ D ++ + + +I + G+ ++ ES + +
Sbjct: 757 IS---SMLD---LKEPLTFWKSAFDRKKVRDEKLLIP---ERGIE--EDFDESADNIVR- 804
Query: 487 LHKQTASDLDLPVDKALKLDKGTQFGHVFR-ITKKEEPKIRKKLTTQFIVLETRKDGVKF 545
+ K S LD ALK K +F V + I + E PK K+ + + ++
Sbjct: 805 IKKDLQSLLDKQ-KAALKC-KSLKFTDVGKEIYQIEAPK-STKVPKDWRQMSATSAVKRY 861
Query: 546 TNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADL 605
+L +L + Q+ E + K++ R + I+ ++S+LD L+ A
Sbjct: 862 YFRELDELVRELQEAEETHSQIVKDVAARFFKRFDVDYAIWIQAIRIISQLDCLICLAKA 921
Query: 606 ASSCPTPYTRPDINPPDVGDIILEGSRHPCV--EAQDWV-NFIP---NDCK--LIRGKSW 657
+SS P RP + + E RHPC+ D++ N I +D L+ G +
Sbjct: 922 SSSLGEPSCRPTFVDHERSVVEFEELRHPCMLNTVDDFIPNDIKLGGDDANINLLTGANA 981
Query: 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR--ASISVRDCIFA 704
T M + + Q+G + A P DR + + D IFA
Sbjct: 982 AGKSTVLRMSCIAVIMAQIGCYV-PAVSARLTPVDRIMSRLGANDNIFA 1029
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 446 (162.1 bits), Expect = 9.2e-39, P = 9.2e-39
Identities = 154/605 (25%), Positives = 272/605 (44%)
Query: 283 RKYSLDSYMRLDSAAMRALNVLESKTDAN---------KNFSLFGLMNRTCTAGMGKRLL 333
+K+ L + +D L + +S++ + + SLFG++NR C G++LL
Sbjct: 212 KKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNR-CHCKWGEKLL 270
Query: 334 HMWLKQPLLDVNEINARLDIVQAFV--DDTALRQDLRQHLKRISDIERLMHNLEKRRAGL 391
+W +P D+ E+++RLD++Q F+ + + Q L + L I ++ ++ ++ +
Sbjct: 271 RLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKV 330
Query: 392 QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
LY++ +R A + S+ + + D + +DD L+ +L+ VD
Sbjct: 331 SDWQVLYKTVYSALGLRDACRSLP---QSI--QLFRDIAQEFSDD--LHHIASLIGKVVD 383
Query: 452 LD-QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLD--LPVDKALKLDKG 508
+ L + + + D + K L + + ++ +LD +P + +
Sbjct: 384 FEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLI 443
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKN 566
+ R+ E + F+ L K + TK L L GD + ++ ++
Sbjct: 444 GFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETL 503
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDI 626
+L +V+ A + + LA S LDVLL+ A A Y+RP +P +G +
Sbjct: 504 LMYQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG--YSRPRYSPQVLG-V 556
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
++ RHP +E F+PN + K ++ITGPN GKS +++QVG+ MA VG
Sbjct: 557 RIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 615
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR 746
SFVP + A I D IF R+ + + G+STFM ++ + A + AT +SL++IDE G+
Sbjct: 616 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK 675
Query: 747 GTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHFHELTALAHENANEFNTKQMV--GVAN 802
GT+T DG L A+ H L P +F AT+F L L Q++ G
Sbjct: 676 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL-----------QLLPQGPLV 724
Query: 803 YHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862
+++ L Y+V G S H A A P+ +V +E + + P
Sbjct: 725 QYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPI 784
Query: 863 AVISD 867
+ D
Sbjct: 785 KPVKD 789
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 446 (162.1 bits), Expect = 1.0e-38, P = 1.0e-38
Identities = 152/563 (26%), Positives = 260/563 (46%)
Query: 302 NVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV--D 359
+V + + + SLFG++NR C G++LL +W +P D+ E+N+RLD++Q F+
Sbjct: 263 SVYKVASGLKEGLSLFGILNR-CRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQ 321
Query: 360 DTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFS 419
+ + Q L + L I ++ ++ ++ LY++ +R A +
Sbjct: 322 NLDMAQMLHRLLGHIKNVPLILKRMKLSHTKTSDWQVLYKTVYSALGLRDACRSLP---Q 378
Query: 420 SLIKERYLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQE 478
S+ + + D + +DD L+ +L+ VD + L + + + D + K
Sbjct: 379 SI--QLFQDIAQEFSDD--LHHIASLIGKVVDFEGSLAENHFTVLPNIDPDIDEKKRRLM 434
Query: 479 SLERQIHSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVL 536
L + + ++ +LD +P + + + R+ E + F+ L
Sbjct: 435 GLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMAEASDFEIEGLDFMFL 494
Query: 537 ETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
K + TK L L GD + + ++ +L +V+ A F+ + LA S
Sbjct: 495 SEGKLHYRSARTKELDALLGDLHCDIRDQETLLMHQLQCQVLARAAVFTRVL-DLA---S 550
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPN--DCKLI 652
LDVLL+ A A Y+RP +P +G + ++ RHP +E F+PN +C
Sbjct: 551 RLDVLLALASAARDYG--YSRPRYSPQLLG-VRIQNGRHPLMELCART-FVPNSAECGGD 606
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712
RG+ ++ITGPN GKS +++QVG+ MA VGSFVP + A I D IF R+ + +
Sbjct: 607 RGR--VKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESI 664
Query: 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAP 771
G+STFM ++ + A + AT +SL++IDE G+GT+T DG L A+ H L P
Sbjct: 665 SLGLSTFMIDLNQVAKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCP 724
Query: 772 TLF-ATHFHELTALAHENANEFNTKQMV--GVANYHVSAHIDSTSRKLTMLYKVEPGACD 828
+F AT+F L L Q++ G +++ L Y+V G
Sbjct: 725 HIFVATNFLSLVQL-----------QLLPQGPLVQYLTMETCEDGDDLVFFYQVCDGLAK 773
Query: 829 QSFGIHVAEFANFPESVVTLARE 851
S H A A P+ ++T +E
Sbjct: 774 ASHASHTAAQAGLPDQLLTRGKE 796
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 439 (159.6 bits), Expect = 5.4e-38, P = 5.4e-38
Identities = 151/589 (25%), Positives = 266/589 (45%)
Query: 283 RKYSLDSYMRLDSAAMRALNVLESKTDAN---------KNFSLFGLMNRTCTAGMGKRLL 333
+K+ L + + +D L + +S++ + + SLFG++NR C G++LL
Sbjct: 209 KKFVLTNLVSIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNR-CRCKWGEKLL 267
Query: 334 HMWLKQPLLDVNEINARLDIVQAFV--DDTALRQDLRQHLKRISDIERLMHNLEKRRAGL 391
+W +P D+ E+N+RLD++Q F+ + + Q L + L I ++ ++ + +
Sbjct: 268 RLWFTRPTQDLGELNSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMTLSHTKV 327
Query: 392 QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
LY++ +R A + S+ + + D + +DD L+ +L+ VD
Sbjct: 328 SDWQVLYKTVYSALGLRDACRSLP---QSI--QLFRDIAQEFSDD--LHHIASLIGKVVD 380
Query: 452 LD-QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLD--LPVDKALKLDKG 508
+ L + + + D + K L + + ++ +LD +P + +
Sbjct: 381 FEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLI 440
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKN 566
+ R+ E + F+ L K + TK L L GD + + ++
Sbjct: 441 GFLLSIPRLPSMVETSDFEIEGLDFMFLSEEKLHYRSARTKELDALLGDLHCDIRDQETL 500
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDI 626
+L +V+ A + + LA S LDVLL+ A A Y+RP +P +G +
Sbjct: 501 LMHQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG--YSRPRYSPRLLG-V 553
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
++ RHP +E F+PN + ++ITGPN GKS +++QVG+ MA VG
Sbjct: 554 RIQNGRHPLMELCART-FVPNSAECGGDAGRVKVITGPNSSGKSIYLKQVGLITFMALVG 612
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR 746
SFVP + A I D IF R+ + + G+STFM ++ + A + AT+RSL+++DE G+
Sbjct: 613 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATERSLVLVDEFGK 672
Query: 747 GTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHFHELTALAHENANEFNTKQMV--GVAN 802
GT+T DG L A+ H L P +F AT+F L L Q++ G
Sbjct: 673 GTNTVDGLALLAAVIRHWLALGPTCPHVFVATNFLSLVQL-----------QLLPRGPLV 721
Query: 803 YHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLARE 851
+++ L Y+V G S H A A PE ++ ++
Sbjct: 722 QYLTMETCEDGDDLVFFYQVCEGVARASHASHTAAQAGLPEKLIARGKQ 770
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 415 (151.1 bits), Expect = 8.8e-38, P = 8.8e-38
Identities = 83/202 (41%), Positives = 129/202 (63%)
Query: 660 IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTF 719
IITGPNMGGKS++I+QV + ++MAQ+GS+VP + A+I + D IF R GA D +G STF
Sbjct: 11 IITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTF 70
Query: 720 MQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779
M+E+ +TA I++ AT RSL+I+DELGRGTST+DG +A+A E+ + ++++ TLF TH+
Sbjct: 71 MEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 130
Query: 780 ELTALAHENANEFNTKQMVGVANY----HVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
+ L + M + N S ++ +T LY++ G +S+G++V
Sbjct: 131 PVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNV 190
Query: 836 AEFANFPESVVTLAREKAAELE 857
A+ A+ P ++ A K+ ELE
Sbjct: 191 AKLADVPREILQKAAHKSKELE 212
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 432 (157.1 bits), Expect = 1.8e-37, P = 1.8e-37
Identities = 139/520 (26%), Positives = 245/520 (47%)
Query: 283 RKYSLDSYMRLDSAAMRALNVLESKTDAN---------KNFSLFGLMNRTCTAGMGKRLL 333
+K+ L + +D L + +S++ + + SLFG++NR C G++LL
Sbjct: 212 KKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNR-CHCKWGEKLL 270
Query: 334 HMWLKQPLLDVNEINARLDIVQAFV--DDTALRQDLRQHLKRISDIERLMHNLEKRRAGL 391
+W +P D+ E+++RLD++Q F+ + + Q L + L I ++ ++ ++ +
Sbjct: 271 RLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKV 330
Query: 392 QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
LY++ +R A + S+ + + D + +DD L+ +L+ VD
Sbjct: 331 SDWQVLYKTVYSALGLRDACRSLP---QSI--QLFRDIAQEFSDD--LHHIASLIGKVVD 383
Query: 452 LD-QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLD--LPVDKALKLDKG 508
+ L + + + D + K L + + ++ +LD +P + +
Sbjct: 384 FEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLI 443
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKN 566
+ R+ E + F+ L K + TK L L GD + ++ ++
Sbjct: 444 GFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETL 503
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDI 626
+L +V+ A + + LA S LDVLL+ A A Y+RP +P +G +
Sbjct: 504 LMYQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG--YSRPRYSPQVLG-V 556
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
++ RHP +E F+PN + K ++ITGPN GKS +++QVG+ MA VG
Sbjct: 557 RIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 615
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR 746
SFVP + A I D IF R+ + + G+STFM ++ + A + AT +SL++IDE G+
Sbjct: 616 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK 675
Query: 747 GTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHFHELTAL 784
GT+T DG L A+ H L P +F AT+F L L
Sbjct: 676 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 715
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 452 (164.2 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 126/388 (32%), Positives = 192/388 (49%)
Query: 504 KLDKGTQFG-HVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLE 562
K K T G V++I E PK K+ ++ + ++ +L+ L + Q+ E
Sbjct: 842 KTAKFTDVGKEVYQI---EVPKT-VKVPPKWRQMSATSAVKRYYFKELEDLVRELQEAEE 897
Query: 563 EYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPD 622
+ KE+ +R + E + ++S+LD L+S A +S+ P RP +
Sbjct: 898 THSQIVKEVASRFFKRFDLDYETWLQAIRIISQLDCLISLAKASSALGQPCCRPVFVNDE 957
Query: 623 VGDIILEGSRHPCV-EAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL 681
+ RHPC+ D +FIPND KL ++ ++TG N GKST +R + ++
Sbjct: 958 RTVVEFNELRHPCMLNTVD--DFIPNDIKLGGDEANINLLTGANAAGKSTILRMSCIAVI 1015
Query: 682 MAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIII 741
MAQ+G +VP A ++ D I +R+GA D STF E+ ET IL AT RSL+I+
Sbjct: 1016 MAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVIL 1075
Query: 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVA 801
DELGRGTS+YDG +A A+ H+ I FATH+H L A EN E ++M +A
Sbjct: 1076 DELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSL-ATEFENHPEIRARRMQ-IA 1133
Query: 802 NYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTP 861
+D ++++T LYK+E G + SFG+H A P+ V+ + A E E +
Sbjct: 1134 -------VDEENKRITFLYKLEDGVAEGSFGMHCAAMCGIPDKVIRRSEVAAKEWEHTSR 1186
Query: 862 SAVISDDAKIEVGSKRKRISDPNDMSRG 889
D AK +SD + RG
Sbjct: 1187 LKESLDRAKTGCYIPLGVLSDVASLLRG 1214
Score = 275 (101.9 bits), Expect = 7.8e-20, P = 7.8e-20
Identities = 119/499 (23%), Positives = 212/499 (42%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRC 215
G+ +VD ++EF DD T E+ + +E +L + + + L++ +
Sbjct: 495 GIAFVDAATGQFFISEFEDDVDLTKFETFVAQTSPRELILEKSHLSTKALRILKNNTSPT 554
Query: 216 GVMLTERKKTEFKTRDLVQ-DLD---RLVRGS----VEPVR-DLVSGFEIAPGALGALLS 266
+ + TEF D+ + +LD V G V P + ++ ALGAL
Sbjct: 555 TIWNYLKPGTEFWDADVARRELDCSGYFVSGEGQEEVWPAKLKEARDKDLLMSALGALTQ 614
Query: 267 YAELLSDESNY---GNY-YIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNR 322
Y +L E N GN+ + + + LD ++ L + + + +LF L+NR
Sbjct: 615 YLRMLKLERNLLSQGNFAWYNPIHRNGTLILDGQSLINLEIFANTANGGPEGTLFHLLNR 674
Query: 323 TCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMH 382
C GKRL W+ PL ++ ++N RLD V DD +LR+ + ++ D+ERL+
Sbjct: 675 -CITPFGKRLFRQWVCHPLCNIQKLNERLDAVDMLNDDHSLREQFSSQMSKMPDLERLIS 733
Query: 383 NLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKF 442
+ + VK+ + ++ L+ Y G + L+ +R + + L + K
Sbjct: 734 RIHAGACRPEDFVKVLEGFEQIDRTMELLESYGGG-NGLV-DRLIASMPDLKEPLGYWKT 791
Query: 443 IALVETSVDLDQLENGEYMISSSYDTG---LSALKNE-QESLERQIHSLHKQTASDLDLP 498
+ + D D+L E I +D L +K E QE LERQ +L +TA D+
Sbjct: 792 AFDRKRARD-DKLLIPEPGIEEDFDRSQAELDRIKGELQELLERQKTALRCKTAKFTDVG 850
Query: 499 VDK-ALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQY 557
+ +++ K T K PK R+ T + ++ +L+ L +
Sbjct: 851 KEVYQIEVPK----------TVKVPPKWRQMSATSAVK--------RYYFKELEDLVREL 892
Query: 558 QKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPD 617
Q+ E + KE+ +R + E + ++S+LD L+S A +S+ P RP
Sbjct: 893 QEAEETHSQIVKEVASRFFKRFDLDYETWLQAIRIISQLDCLISLAKASSALGQPCCRPV 952
Query: 618 INPPDVGDIILEGSRHPCV 636
+ + RHPC+
Sbjct: 953 FVNDERTVVEFNELRHPCM 971
Score = 37 (18.1 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 95 ERTDHTLELYEGSGSNWRLV 114
E+ D T+EL E G LV
Sbjct: 753 EQIDRTMELLESYGGGNGLV 772
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 432 (157.1 bits), Expect = 3.1e-37, P = 3.1e-37
Identities = 139/520 (26%), Positives = 245/520 (47%)
Query: 283 RKYSLDSYMRLDSAAMRALNVLESKTDAN---------KNFSLFGLMNRTCTAGMGKRLL 333
+K+ L + +D L + +S++ + + SLFG++NR C G++LL
Sbjct: 229 KKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNR-CHCKWGEKLL 287
Query: 334 HMWLKQPLLDVNEINARLDIVQAFV--DDTALRQDLRQHLKRISDIERLMHNLEKRRAGL 391
+W +P D+ E+++RLD++Q F+ + + Q L + L I ++ ++ ++ +
Sbjct: 288 RLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKV 347
Query: 392 QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
LY++ +R A + S+ + + D + +DD L+ +L+ VD
Sbjct: 348 SDWQVLYKTVYSALGLRDACRSLP---QSI--QLFRDIAQEFSDD--LHHIASLIGKVVD 400
Query: 452 LD-QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLD--LPVDKALKLDKG 508
+ L + + + D + K L + + ++ +LD +P + +
Sbjct: 401 FEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLI 460
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKN 566
+ R+ E + F+ L K + TK L L GD + ++ ++
Sbjct: 461 GFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETL 520
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDI 626
+L +V+ A + + LA S LDVLL+ A A Y+RP +P +G +
Sbjct: 521 LMYQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG--YSRPRYSPQVLG-V 573
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
++ RHP +E F+PN + K ++ITGPN GKS +++QVG+ MA VG
Sbjct: 574 RIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 632
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR 746
SFVP + A I D IF R+ + + G+STFM ++ + A + AT +SL++IDE G+
Sbjct: 633 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK 692
Query: 747 GTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHFHELTAL 784
GT+T DG L A+ H L P +F AT+F L L
Sbjct: 693 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 732
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 432 (157.1 bits), Expect = 3.2e-37, P = 3.2e-37
Identities = 151/563 (26%), Positives = 261/563 (46%)
Query: 302 NVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV--D 359
+V + + + SLFG++NR C G++LL +W +P ++ E+N+RLD++Q F+
Sbjct: 239 SVYKVASGLKEGLSLFGILNR-CRCKWGQKLLRLWFTRPTRELRELNSRLDVIQFFLMPQ 297
Query: 360 DTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFS 419
+ + Q L + L I ++ ++ ++ + LY++ +R A +
Sbjct: 298 NLDMAQMLHRLLSHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLP---Q 354
Query: 420 SLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQ-LENGEYMISSSYDTGLSALKNEQE 478
S+ + + D + +DD L+ +L+ VD ++ L + + + D + A K
Sbjct: 355 SI--QLFQDIAQEFSDD--LHHIASLIGKVVDFEESLAENRFTVLPNIDPDIDAKKRRLI 410
Query: 479 SLERQIHSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVL 536
L + + ++ +LD +P + + + R+ E + F+ L
Sbjct: 411 GLPSFLTEVAQKELENLDSRIPSCSVIYIPLIGFLLSIPRLPFMVEASDFEIEGLDFMFL 470
Query: 537 ETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
K + TK L L GD + ++ ++ +L +V+ A + + LA S
Sbjct: 471 SEDKLHYRSARTKELDTLLGDLHCEIRDQETLLMYQLQCQVLARASVLTRVL-DLA---S 526
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPN--DCKLI 652
LDVLL+ A A Y+RP +P G I G RHP +E F+PN DC
Sbjct: 527 RLDVLLALASAARDYG--YSRPHYSPCIHGVRIRNG-RHPLMELCART-FVPNSTDCGGD 582
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712
+G+ ++ITGPN GKS +++QVG+ MA VGSFVP + A I V D IF R+ + +
Sbjct: 583 QGR--VKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESI 640
Query: 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAP 771
G+STFM ++ + A + AT+ SL++IDE G+GT++ DG L A+ H L P
Sbjct: 641 SLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLAAVLRHWLALGPSCP 700
Query: 772 TLF-ATHFHELTALAHENANEFNTKQMV--GVANYHVSAHIDSTSRKLTMLYKVEPGACD 828
+F AT+F L L Q++ G +++ L Y++ G
Sbjct: 701 HVFVATNFLSLVQL-----------QLLPQGPLVQYLTMETCEDGEDLVFFYQLCQGVAS 749
Query: 829 QSFGIHVAEFANFPESVVTLARE 851
S H A A P+ ++ +E
Sbjct: 750 ASHASHTAAQAGLPDPLIARGKE 772
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 429 (156.1 bits), Expect = 6.8e-37, P = 6.8e-37
Identities = 147/573 (25%), Positives = 266/573 (46%)
Query: 302 NVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV--D 359
+V + + + SLFG++NR C G++LL +W +P ++ E+N+RLD+++ F+
Sbjct: 237 SVYKVASGLKEGLSLFGILNR-CRCRWGQKLLRLWFTRPTRELRELNSRLDVIEFFLMPQ 295
Query: 360 DTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFS 419
+ + Q + + L I ++ ++ ++ + LY++ +R A +
Sbjct: 296 NLDMAQMMHRLLSHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLP---Q 352
Query: 420 SLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQ-LENGEYMISSSYDTGLSALKNEQE 478
S+ + + D + +DD L+ +L+ VD ++ L + + + D + A K
Sbjct: 353 SI--QLFRDITQEFSDD--LHHIASLIGKVVDFEESLAENRFTVLPNIDPEIDAKKRRLM 408
Query: 479 SLERQIHSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVL 536
L + + ++ +LD +P + + + R++ E + F+ L
Sbjct: 409 GLPSFLTEVAQKELENLDSCIPSCSVIYIPLIGFLLSIPRLSFMVEASDFEIEGLDFMFL 468
Query: 537 ETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLS 594
K + TK L L GD + ++ ++ +L +V+ A + + LA S
Sbjct: 469 SEDKLHYRSARTKELDALLGDLHCEIRDQEMLLMHQLQCQVLARAPVLTRVL-DLA---S 524
Query: 595 ELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPN--DCKLI 652
LDVLL+ A A Y+RP +P G + ++ RHP +E F+PN DC
Sbjct: 525 RLDVLLALASAARDYG--YSRPHYSPCIQG-VRIKNGRHPLMELCART-FVPNSTDCGGD 580
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712
+G+ ++ITGPN GKS +++QVG+ MA VGSFVP + A I V D IF R+ + +
Sbjct: 581 QGR--VKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESI 638
Query: 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAP 771
G+STFM ++ + A + AT+ SL++IDE G+GT++ DG L A+ H L P
Sbjct: 639 SLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLTAVLRHWLALGPSCP 698
Query: 772 TLF-ATHFHELTALAHENANEFNTKQMV--GVANYHVSAHIDSTSRKLTMLYKVEPGACD 828
+F AT+F L L Q++ G +++ L Y++ G
Sbjct: 699 HIFVATNFLSLVQL-----------QLLPQGPLVQYLTMETCEDGNDLVFFYQLCHGVAS 747
Query: 829 QSFGIHVAEFANFPESVVTLAREKAAELEDFTP 861
S + A A P+ ++ +E + + P
Sbjct: 748 ASHASYTAAQAGLPDPLIARGKEVSDSIRSGKP 780
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 405 (147.6 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 83/204 (40%), Positives = 129/204 (63%)
Query: 660 IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARV--GAGDCQLRGVS 717
IITGPNMGGKS++I+QV + ++MAQ+GS+VP + A+I + D IF R GA D +G S
Sbjct: 10 IITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRQRRGAADNIYKGRS 69
Query: 718 TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777
TFM+E+ +TA I++ AT RSL+I+DELGRGTST+DG +A+A E+ + ++++ TLF TH
Sbjct: 70 TFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTH 129
Query: 778 FHELTALAHENANEFNTKQMVGVANY----HVSAHIDSTSRKLTMLYKVEPGACDQSFGI 833
+ + L + M + N S ++ +T LY++ G +S+G+
Sbjct: 130 YPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIAARSYGL 189
Query: 834 HVAEFANFPESVVTLAREKAAELE 857
+VA+ A+ P ++ A K+ ELE
Sbjct: 190 NVAKLADVPREILQKAAHKSKELE 213
>UNIPROTKB|A8JJF1 [details] [associations]
symbol:CHLREDRAFT_181107 "MSH2-like protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR007696 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS496467 RefSeq:XP_001698121.1
EnsemblPlants:EDO95996 GeneID:5723679 KEGG:cre:CHLREDRAFT_181107
Uniprot:A8JJF1
Length = 221
Score = 237 (88.5 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 49/118 (41%), Positives = 74/118 (62%)
Query: 501 KALKLD--KGTQF-GHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQY 557
K++KL+ K RIT+KEE +R KL ++++V+ETRKDG KFT+ L++ ++
Sbjct: 104 KSIKLEWHKAANTRSRCLRITQKEEKNVRGKLQSKYLVIETRKDGTKFTHKPLREAAERL 163
Query: 558 QKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTR 615
+Y Q ELV +V+ A TF E+++ + +L ELDVLL+FA+ A PTPY R
Sbjct: 164 NAASGQYGAVQAELVQQVVSVAATFVEVWEEVGALLGELDVLLAFAEAACVAPTPYVR 221
Score = 197 (74.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 41/105 (39%), Positives = 62/105 (59%)
Query: 54 IAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRL 113
IA+ +Y TT +R +G L V+V++ MFETI R+LLL T H +ELYE +G+ W+L
Sbjct: 2 IARQFYRTTAVVRGADSG---LPYVNVNRAMFETILRELLLGGTAHVVELYEQAGTGWKL 58
Query: 114 VKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLG 158
+S TPG L ++++ L+ + +M D +VA G LG
Sbjct: 59 ARSATPGRLAAFDEELYRSGDMSDVVAVVAALAFSAAEGQVTALG 103
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 424 (154.3 bits), Expect = 1.4e-36, P = 1.4e-36
Identities = 139/521 (26%), Positives = 245/521 (47%)
Query: 283 RKYSLDSYMRLDSAAMRALNVLESKTDAN---------KNFSLFGLMNRTCTAGMGKRLL 333
+K+ L + +D L + +S++ + + SLFG++NR C G++LL
Sbjct: 212 KKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNR-CHCKWGEKLL 270
Query: 334 HMWLKQPLLDVNEINARLDIVQAFV--DDTALRQDLRQHLKRISDIERLMHNLEKRRAGL 391
+W +P D+ E+++RLD++Q F+ + + Q L + L I ++ ++ ++ +
Sbjct: 271 RLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKV 330
Query: 392 QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
LY++ +R A + S+ + + D + +DD L+ +L+ VD
Sbjct: 331 SDWQVLYKTVYSALGLRDACRSLP---QSI--QLFRDIAQEFSDD--LHHIASLIGKVVD 383
Query: 452 LD-QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLD--LPVDKALKLDKG 508
+ L + + + D + K L + + ++ +LD +P + +
Sbjct: 384 FEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLI 443
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKN 566
+ R+ E + F+ L K + TK L L GD + ++ ++
Sbjct: 444 GFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETL 503
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDI 626
+L +V+ A + + LA S LDVLL+ A A Y+RP +P +G +
Sbjct: 504 LMYQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG--YSRPRYSPQVLG-V 556
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
++ RHP +E F+PN + K ++ITGPN GKS +++QVG+ MA VG
Sbjct: 557 RIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 615
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM-LETASILKGATDRSLIIIDELG 745
SFVP + A I D IF R+ + + G+STFM ++ + A + AT +SL++IDE G
Sbjct: 616 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFG 675
Query: 746 RGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHFHELTAL 784
+GT+T DG L A+ H L P +F AT+F L L
Sbjct: 676 KGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 716
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 418 (152.2 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 147/573 (25%), Positives = 270/573 (47%)
Query: 260 ALGALLSYAE---LLSDESNYGNYYIRKY---SLDSYMRLDSAAMRALNVLESKT----- 308
A+G LLSY LL D + N I + +L+ Y+ LD+ + +L + ++
Sbjct: 188 AVGGLLSYLSKYILLDDFDSLDNLIINEICPITLNQYLLLDNNTLFSLQIFSNQNHPSCY 247
Query: 309 ---DANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV--DDTAL 363
++ + SLFGL ++T T MGK+LL W +P + I R +++Q F ++++L
Sbjct: 248 SFGNSKEGLSLFGLFDKTKTT-MGKKLLKTWFMRPSRNRFVIEERQNLIQFFSSQENSSL 306
Query: 364 RQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIK 423
+ +L +LK I D++ ++ + + + + +Y++ I+ + + L K
Sbjct: 307 KFELLDNLKNIKDLKIILSRISSSQNPSKDFISIYKTFHYFLKIKLLIVPKNSELPFLKK 366
Query: 424 ERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQ 483
L P +SL + KF ++ + DQ ++ I D L L+N S++ +
Sbjct: 367 LNNLYP-QSLVNI--YQKFESIFFFA---DQ-DDQRISIREGVDEELDQLRNVYLSMD-E 418
Query: 484 IHSLHKQT--ASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFI--VLETR 539
I + H + +L + L Q G + I +E I ++ + + +T
Sbjct: 419 ILTEHGELERVKFTNLTWITSFHLVYYPQLGCLICIPIEESIAIGNQINIPSLSFIFKT- 477
Query: 540 KDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVL 599
+ F N K K+L D + + + + Q + V+ ++ S L ++LD +
Sbjct: 478 SSYLYFQNQKTKELDDFFGDIHNDILDIQSRIEKEVVDEIMSNSGSIIDLCNYCTQLDCI 537
Query: 600 LSFADLASSCPTPY--TRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSW 657
LS A SC Y +P I+ + +I ++ RH ++ NFIPND + K
Sbjct: 538 LSLA----SCVQAYDLVKPIIST-EQQEIEIQSGRH-LIQEYCVTNFIPNDTQNDPTKP- 590
Query: 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVS 717
I++GPN GKS +I+QV + + + Q+GS+VP A+IS+ D I+ R+ + + S
Sbjct: 591 VVIVSGPNQSGKSIYIKQVALIVFLGQIGSYVPAKSATISLFDHIYTRISSRESNAISES 650
Query: 718 TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA-P-TLFA 775
+FM + + A + + AT RSL+IIDE G+GT+ DG L + + L+ + + P T
Sbjct: 651 SFMIDCKQIAQMTRFATSRSLLIIDEYGKGTNPLDGISLLYGLLVFLLTKSPSTPKTFIC 710
Query: 776 THFHELTALAHENANEFNTKQMVGVANYHVSAH 808
THF+E L + + K + + + +
Sbjct: 711 THFYEFFELISNSTDSIFNKVLFNTMEFVIETN 743
Score = 59 (25.8 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 803 YHVSAHIDSTSRK---LTMLYKVEPGACDQSFGIHVAEFANFPESVVTLARE 851
++ + I +T+ K YK++ G SFGI A+ A E+VV A E
Sbjct: 772 FNTTNKITNTNNKPNEFIPFYKLKEGISSSSFGILCAKIAGVNENVVNRAYE 823
Score = 43 (20.2 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 155 IGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPT 197
IG+ Y D + + L + +D +F+ + S + K ++P+
Sbjct: 64 IGVAYYDRLESNIYLCQCWEDENFSCLNSIKQLINPKVIIIPS 106
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 424 (154.3 bits), Expect = 1.6e-36, P = 1.6e-36
Identities = 139/521 (26%), Positives = 245/521 (47%)
Query: 283 RKYSLDSYMRLDSAAMRALNVLESKTDAN---------KNFSLFGLMNRTCTAGMGKRLL 333
+K+ L + +D L + +S++ + + SLFG++NR C G++LL
Sbjct: 229 KKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNR-CHCKWGEKLL 287
Query: 334 HMWLKQPLLDVNEINARLDIVQAFV--DDTALRQDLRQHLKRISDIERLMHNLEKRRAGL 391
+W +P D+ E+++RLD++Q F+ + + Q L + L I ++ ++ ++ +
Sbjct: 288 RLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKV 347
Query: 392 QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
LY++ +R A + S+ + + D + +DD L+ +L+ VD
Sbjct: 348 SDWQVLYKTVYSALGLRDACRSLP---QSI--QLFRDIAQEFSDD--LHHIASLIGKVVD 400
Query: 452 LD-QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLD--LPVDKALKLDKG 508
+ L + + + D + K L + + ++ +LD +P + +
Sbjct: 401 FEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLI 460
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKN 566
+ R+ E + F+ L K + TK L L GD + ++ ++
Sbjct: 461 GFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETL 520
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDI 626
+L +V+ A + + LA S LDVLL+ A A Y+RP +P +G +
Sbjct: 521 LMYQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG--YSRPRYSPQVLG-V 573
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG 686
++ RHP +E F+PN + K ++ITGPN GKS +++QVG+ MA VG
Sbjct: 574 RIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 632
Query: 687 SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM-LETASILKGATDRSLIIIDELG 745
SFVP + A I D IF R+ + + G+STFM ++ + A + AT +SL++IDE G
Sbjct: 633 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFG 692
Query: 746 RGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHFHELTAL 784
+GT+T DG L A+ H L P +F AT+F L L
Sbjct: 693 KGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 733
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 402 (146.6 bits), Expect = 2.2e-36, P = 2.2e-36
Identities = 79/85 (92%), Positives = 83/85 (97%)
Query: 675 QVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT 734
QVGVN+LMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA+
Sbjct: 15 QVGVNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAS 74
Query: 735 DRSLIIIDELGRGTSTYDGFGLAWA 759
D+SLIIIDELGRGTSTYDGFG W+
Sbjct: 75 DKSLIIIDELGRGTSTYDGFG--WS 97
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 432 (157.1 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 139/483 (28%), Positives = 227/483 (46%)
Query: 400 SSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGE 459
+ +R YI+ Q EG+ L+ E + E D+++ F + + S +++G+
Sbjct: 708 NKLRKEYIKV---QKEGEGCELLDELLGNEQEMEEVDENIYFFEKMFDRST---AMKDGK 761
Query: 460 YMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLD-KGTQFGHVFRIT 518
+ ++ D + E+L R +L++ +D V K K G V +
Sbjct: 762 IVPNAGCD------EEYDEALNRVKEALNE--LNDYKDSVAKKYSCSIKFVDSGKVKYLL 813
Query: 519 KKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQT 578
+ E K+++ F + RK ++++ ++L V +E + RV +
Sbjct: 814 EMPE---NTKVSSSFELKSRRKGFIRYSTPDSEQLVAALDAVEKEKSKLGDDATRRVFEQ 870
Query: 579 AVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRP--DINPPDVGDIILEGSRHPCV 636
+ I+ ++S DVL S A A S P P D N D I+ +G HPC+
Sbjct: 871 FGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFNATDPYLIVDKGV-HPCL 929
Query: 637 ------EAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVP 690
E +FI N + ++ ++TGPNMGGKST +RQ V ++A +GS VP
Sbjct: 930 ALQSRNEVTQTTSFIANSTTMGASEAAVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVP 989
Query: 691 CDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTST 750
++ D IF R+GA D + G STF E+ ET +LK AT SL+++DELGRGTST
Sbjct: 990 AFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNATKHSLLLVDELGRGTST 1049
Query: 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHEL--TALAHENANEFNTKQMVGVANYHVSAH 808
+DG +A A+ + + +++ T F+TH+H + + H N + K +V N
Sbjct: 1050 FDGTAIASAVLQKISDDLACRTFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENNE---- 1105
Query: 809 IDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDD 868
D T +T LY++E G C +S+G + A+ A VV R E F + +I D
Sbjct: 1106 -DPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQVV---RNAYLESNKFASNLII--D 1159
Query: 869 AKI 871
KI
Sbjct: 1160 PKI 1162
Score = 166 (63.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 78/368 (21%), Positives = 160/368 (43%)
Query: 293 LDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLD 352
LD A+ LN++ + D++ SL+ ++N+ C+ G+RLL WL QP D ++ R
Sbjct: 573 LDGTALENLNIVPNGRDSHLT-SLYYVINK-CSTPFGRRLLRSWLLQPTCDPKKLEQRQK 630
Query: 353 IVQAFV--DDTALRQDLRQHLKRISDIERLMHNLE----KRRAGLQQIVK-LYQSSIRLP 405
++ V D ++ LK+I D++RL+ + K R+ + ++ +I+
Sbjct: 631 AIKWLVSPDASSFMTTATATLKKIPDLDRLLQKIHTIGLKYRSEKHPDSRAIFFDTIKTN 690
Query: 406 Y--IRSALQQYEG-QFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMI 462
I L +G + + +++ Y+ + + L++ L+ ++++++ Y
Sbjct: 691 QKKIAELLAAIDGFKLCNKLRKEYIKVQKEGEGCELLDE---LLGNEQEMEEVDENIYFF 747
Query: 463 SSSYDTGLSALKNEQ--------ESLERQIHSLHKQTASDL-DLPVDKALKLDKGTQFGH 513
+D +A+K+ + E + ++ + K+ ++L D A K +F
Sbjct: 748 EKMFDRS-TAMKDGKIVPNAGCDEEYDEALNRV-KEALNELNDYKDSVAKKYSCSIKFVD 805
Query: 514 VFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVN 573
++ E K+++ F + RK ++++ ++L V +E +
Sbjct: 806 SGKVKYLLEMPENTKVSSSFELKSRRKGFIRYSTPDSEQLVAALDAVEKEKSKLGDDATR 865
Query: 574 RVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRP--DINPPDVGDIILEGS 631
RV + + I+ ++S DVL S A A S P P D N D I+ +G
Sbjct: 866 RVFEQFGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFNATDPYLIVDKGV 925
Query: 632 RHPCVEAQ 639
HPC+ Q
Sbjct: 926 -HPCLALQ 932
Score = 46 (21.3 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 34/171 (19%), Positives = 67/171 (39%)
Query: 145 FPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSE 204
F N + G+ +D T + + +F DD + + + + L + + ++ ++ S+
Sbjct: 393 FHNPETGKSSYGVCMIDTTTAHIRIGQFEDDDYRSQLRTLLANVIVVQAIVERGSISSTT 452
Query: 205 CKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGAL 264
+ L V KK +F T +D+ R+V D E+ G L
Sbjct: 453 KSIINGILFSVPVEHLLPKK-QFMT---AEDVVRIVSNEDYYGSDASEWPEVLKGMLEDS 508
Query: 265 LSYAELLSDE----SNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDAN 311
+ +D S +G + Y DS + +D +MR + + S + N
Sbjct: 509 SILPKPSTDWQLALSAFGAIFW--YLRDSLIDVDMLSMRNVTIYNSNSMEN 557
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 432 (157.1 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 139/483 (28%), Positives = 227/483 (46%)
Query: 400 SSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGE 459
+ +R YI+ Q EG+ L+ E + E D+++ F + + S +++G+
Sbjct: 708 NKLRKEYIKV---QKEGEGCELLDELLGNEQEMEEVDENIYFFEKMFDRST---AMKDGK 761
Query: 460 YMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLD-KGTQFGHVFRIT 518
+ ++ D + E+L R +L++ +D V K K G V +
Sbjct: 762 IVPNAGCD------EEYDEALNRVKEALNE--LNDYKDSVAKKYSCSIKFVDSGKVKYLL 813
Query: 519 KKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQT 578
+ E K+++ F + RK ++++ ++L V +E + RV +
Sbjct: 814 EMPE---NTKVSSSFELKSRRKGFIRYSTPDSEQLVAALDAVEKEKSKLGDDATRRVFEQ 870
Query: 579 AVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRP--DINPPDVGDIILEGSRHPCV 636
+ I+ ++S DVL S A A S P P D N D I+ +G HPC+
Sbjct: 871 FGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFNATDPYLIVDKGV-HPCL 929
Query: 637 ------EAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVP 690
E +FI N + ++ ++TGPNMGGKST +RQ V ++A +GS VP
Sbjct: 930 ALQSRNEVTQTTSFIANSTTMGASEAAVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVP 989
Query: 691 CDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTST 750
++ D IF R+GA D + G STF E+ ET +LK AT SL+++DELGRGTST
Sbjct: 990 AFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNATKHSLLLVDELGRGTST 1049
Query: 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHEL--TALAHENANEFNTKQMVGVANYHVSAH 808
+DG +A A+ + + +++ T F+TH+H + + H N + K +V N
Sbjct: 1050 FDGTAIASAVLQKISDDLACRTFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENNE---- 1105
Query: 809 IDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDD 868
D T +T LY++E G C +S+G + A+ A VV R E F + +I D
Sbjct: 1106 -DPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQVV---RNAYLESNKFASNLII--D 1159
Query: 869 AKI 871
KI
Sbjct: 1160 PKI 1162
Score = 166 (63.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 78/368 (21%), Positives = 160/368 (43%)
Query: 293 LDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLD 352
LD A+ LN++ + D++ SL+ ++N+ C+ G+RLL WL QP D ++ R
Sbjct: 573 LDGTALENLNIVPNGRDSHLT-SLYYVINK-CSTPFGRRLLRSWLLQPTCDPKKLEQRQK 630
Query: 353 IVQAFV--DDTALRQDLRQHLKRISDIERLMHNLE----KRRAGLQQIVK-LYQSSIRLP 405
++ V D ++ LK+I D++RL+ + K R+ + ++ +I+
Sbjct: 631 AIKWLVSPDASSFMTTATATLKKIPDLDRLLQKIHTIGLKYRSEKHPDSRAIFFDTIKTN 690
Query: 406 Y--IRSALQQYEG-QFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMI 462
I L +G + + +++ Y+ + + L++ L+ ++++++ Y
Sbjct: 691 QKKIAELLAAIDGFKLCNKLRKEYIKVQKEGEGCELLDE---LLGNEQEMEEVDENIYFF 747
Query: 463 SSSYDTGLSALKNEQ--------ESLERQIHSLHKQTASDL-DLPVDKALKLDKGTQFGH 513
+D +A+K+ + E + ++ + K+ ++L D A K +F
Sbjct: 748 EKMFDRS-TAMKDGKIVPNAGCDEEYDEALNRV-KEALNELNDYKDSVAKKYSCSIKFVD 805
Query: 514 VFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVN 573
++ E K+++ F + RK ++++ ++L V +E +
Sbjct: 806 SGKVKYLLEMPENTKVSSSFELKSRRKGFIRYSTPDSEQLVAALDAVEKEKSKLGDDATR 865
Query: 574 RVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRP--DINPPDVGDIILEGS 631
RV + + I+ ++S DVL S A A S P P D N D I+ +G
Sbjct: 866 RVFEQFGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFNATDPYLIVDKGV 925
Query: 632 RHPCVEAQ 639
HPC+ Q
Sbjct: 926 -HPCLALQ 932
Score = 46 (21.3 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 34/171 (19%), Positives = 67/171 (39%)
Query: 145 FPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSE 204
F N + G+ +D T + + +F DD + + + + L + + ++ ++ S+
Sbjct: 393 FHNPETGKSSYGVCMIDTTTAHIRIGQFEDDDYRSQLRTLLANVIVVQAIVERGSISSTT 452
Query: 205 CKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGAL 264
+ L V KK +F T +D+ R+V D E+ G L
Sbjct: 453 KSIINGILFSVPVEHLLPKK-QFMT---AEDVVRIVSNEDYYGSDASEWPEVLKGMLEDS 508
Query: 265 LSYAELLSDE----SNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDAN 311
+ +D S +G + Y DS + +D +MR + + S + N
Sbjct: 509 SILPKPSTDWQLALSAFGAIFW--YLRDSLIDVDMLSMRNVTIYNSNSMEN 557
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 432 (157.1 bits), Expect = 7.3e-36, Sum P(2) = 7.3e-36
Identities = 110/303 (36%), Positives = 165/303 (54%)
Query: 552 KLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPT 611
+LG + ++ + + ++ + ++ + + + A+++ ELDV SFA LA+
Sbjct: 616 ELGGRMDQIKVQIRQEEQAIFEQLRREVILNLVKIRRNASVMDELDVACSFATLAAE--Q 673
Query: 612 PYTRPDINPPDVGDIILEGSRHPCVEA---QDWVNFIPNDCKLIRGKS-WFQIITGPNMG 667
RP + II G RHP V+ + F+ NDC L + W +ITGPNM
Sbjct: 674 QLVRPILTEGTNYKII--GGRHPTVKLGLEEQGRRFVSNDCFLGESERIW--LITGPNMA 729
Query: 668 GKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETA 727
GKSTF+RQ + ++AQVGSFVP D A I + D IF+R+GA D R STFM EMLETA
Sbjct: 730 GKSTFLRQNALITILAQVGSFVPADYAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLETA 789
Query: 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787
+ILK AT RS +I+DE+GRGT+ DG +++A HL + TLFATHFH L +
Sbjct: 790 AILKQATARSFVIMDEVGRGTTPEDGTAVSFACLHHLHYRNQCRTLFATHFHGLADM--- 846
Query: 788 NANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVT 847
T++ + Y ++T + + ++K+ G +S + VA+ A P +
Sbjct: 847 ------TQEFPALGRYCTDVK-ETTEGRFSFVHKLRKGINRESHALKVAQLAGLPSETLE 899
Query: 848 LAR 850
LAR
Sbjct: 900 LAR 902
Score = 38 (18.4 bits), Expect = 7.3e-36, Sum P(2) = 7.3e-36
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 380 LMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLE 431
+ H+ + RR Q+ ++ + R +S ++ + ++ E Y D +E
Sbjct: 36 ICHHAQPRRVAAPQLTTVFHNQRRSAKTKSTVKLKDLPQGAVKLEPYQDVVE 87
Score = 37 (18.1 bits), Expect = 9.3e-36, Sum P(2) = 9.3e-36
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 420 SLIKERYLDPLES 432
+LI E+++DP E+
Sbjct: 204 TLIDEKFMDPSEN 216
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 417 (151.9 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 157/615 (25%), Positives = 280/615 (45%)
Query: 260 ALGALLSYAE-----LLSDESNYGNYYI--RKYSLDSYMRLDSAAMRALNVLES------ 306
ALG LL Y + + +ES+ + RK+ L + +D L + +S
Sbjct: 140 ALGGLLKYLDRRRVGVELEESSIAVPVLAFRKFVLSETVNIDQDTYCVLQIFKSDIHPSV 199
Query: 307 ---KTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV----D 359
+ + FSL+G++NR C G++LL +WL +P ++ E+N RLD++ F+
Sbjct: 200 YKLSSGLKEGFSLYGILNR-CRCKWGEKLLRLWLTRPTRNLTELNKRLDVIHFFLLAQNH 258
Query: 360 DTALR-QDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQF 418
+T L QD +++K + I + M + + Q + K S++ L +L + +
Sbjct: 259 ETVLTLQDCLRNIKNVPLILKRMTLSHTKVSDWQALYKTVCSALCLRDTCRSLP-HSIEL 317
Query: 419 SSLIKERYLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQ 477
+I + TDD L +L+ VD + L + + + D + K
Sbjct: 318 FQIISRVF-------TDD--LQYIASLISKVVDFEGSLSQNRFTVRPNVDPTIDEKKRRL 368
Query: 478 ESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE 537
L + + ++ LD + + G + I + P + K + L+
Sbjct: 369 MGLSDFLTEVAQKELETLDNHIPSCCVIYIPL-IGFLLSIPRL--PSMVDKSDFEIEGLD 425
Query: 538 ---TRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTF-SEIFKSLATML 593
+D + + + + K+L + E ++ Q+ L+ +QT + S++ ++
Sbjct: 426 FMFLSEDKLHYRSARTKELDSLLGDLHCEIRD-QETLIMHQLQTKILERSQVLNNVIEYT 484
Query: 594 SELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIR 653
+ LDVLL+ A +A Y RP G I +G RHP +E F+ N
Sbjct: 485 AHLDVLLALAVMARE--NSYCRPRFTQRH-GFHIKDG-RHPLMELCA-KTFVANPVNSGE 539
Query: 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQL 713
+IITGPN GKS +++QVG+ I MA +GS+VP A I D I+ R+ +
Sbjct: 540 ATRRIKIITGPNSSGKSIYLKQVGLIIFMALIGSYVPAAEAEIGAIDGIYTRIHTRESVS 599
Query: 714 RGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE-IRAPT 772
G+STFM ++ + A + AT+RSL++IDE G+GT+T DG L A+ ++ + + + P
Sbjct: 600 VGLSTFMIDLNQVAKAVNNATERSLVLIDEFGKGTNTLDGLALLAAVLKYWINQGTQCPQ 659
Query: 773 LF-ATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSF 831
+F +T+FH L L E + T + +A + H D +L Y+++ G S
Sbjct: 660 VFVSTNFHSLMQL--ELLPD--TPLLEYLA---METHQDGD--ELVFFYQIKQGVSTVSH 710
Query: 832 GIHVAEFANFPESVV 846
++A A P ++
Sbjct: 711 AANIAALAGMPAKII 725
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 407 (148.3 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 156/628 (24%), Positives = 295/628 (46%)
Query: 282 IRKYSLDSYMRLDSAAMRALNVLESKTDANKNF----SLFGLMNRTCTAGMGKRLLHMWL 337
I+ ++L + + +D ++AL++L +T+ K F SL+ LM++ C + +GK+ L W
Sbjct: 269 IKTFTLGNLVEIDFNTIQALDILPKETENKKTFGQGRSLYQLMDK-CRSTVGKKCLRKWF 327
Query: 338 KQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRI-SDIERLMHNLEKRRAGLQQIV- 395
+ P D +++ +R V F D ++ L I ++ L +K ++G Q++
Sbjct: 328 RNPTTDRDDLVSRQKCVHYFKQDW--NAEVTAKLSSILGRVKALNSVFQKFQSGTAQLIH 385
Query: 396 -KLYQSSIR-LPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKF--IALVETSVD 451
+ + S++ L I + ++Q + + KE P+ES D L + IA++ S+
Sbjct: 386 WECFVSTVNALVEILNIIRQ-----TPISKEF---PVES----DLLREVSEIAVIAGSI- 432
Query: 452 LDQLEN---GEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKG 508
++ E+ G + + D L +++ E++ + ++ KQ + L LP +
Sbjct: 433 INFAESKIQGRVTVMNGIDEELDEIRDTYENMPMVLTAIAKQEEARLGLPPYSNVACVYI 492
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQ 568
G V + + + + +T ++ T +D ++ N +L D++ +L + Q
Sbjct: 493 PLVGFVLSVPRDYGVESQPDMT---LLYSTHED-LRVRNATTSRLDDEFGDILMRLIDSQ 548
Query: 569 KELVNRVIQTAVTFSE--IFKSLATMLSELDVLLSFADLAS----SCPTPYTRPDINPPD 622
++ ++T V + I K L ++ S +DVL+SF +A+ +CP P I +
Sbjct: 549 TAII-LTLKTRVMKKKRSIIK-LLSIASRIDVLISFGLIAAQNGWNCPALVDEPVIEAVE 606
Query: 623 VGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM 682
+ HP +F+PN R IITGPN GKS +++ +G+ + +
Sbjct: 607 L--------YHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFL 658
Query: 683 AQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIID 742
+ +GSFVP A I + D I R+ D L G+STF +++ + A L+ AT SL+IID
Sbjct: 659 SHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVIID 718
Query: 743 ELGRGTSTYDGFGLAWAICEHLVEE--IRAPTLF-ATHFHELTALAHENANEFNTKQMVG 799
E G+GT T G L ++ + + R P +F ++HFH AL + E N
Sbjct: 719 EFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFH---ALPNYIPLETN------ 769
Query: 800 VANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 859
+A + + K+ L+++ PG D SF + VA+ P V+ +A +
Sbjct: 770 IATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEGIPPPVIG----RACRIYKA 825
Query: 860 TPSAVISDDAKIEVGS-KRKRISDPNDM 886
+ + + K EV + K++ + D+
Sbjct: 826 LKAGTLLKEIKAEVSNDNEKQLVEDMDV 853
Score = 38 (18.4 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 866 SDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEFSDMPLETM 908
SD K + +R + S + + + ++ D P ET+
Sbjct: 1089 SDPFKTPISDRRSQQSSRHSTPKNRSMNQSLIQSARDTPHETI 1131
Score = 37 (18.1 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 220 TERKKTEFKTRDLVQDLDR 238
TE KKT + R L Q +D+
Sbjct: 295 TENKKTFGQGRSLYQLMDK 313
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 407 (148.3 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 156/628 (24%), Positives = 295/628 (46%)
Query: 282 IRKYSLDSYMRLDSAAMRALNVLESKTDANKNF----SLFGLMNRTCTAGMGKRLLHMWL 337
I+ ++L + + +D ++AL++L +T+ K F SL+ LM++ C + +GK+ L W
Sbjct: 269 IKTFTLGNLVEIDFNTIQALDILPKETENKKTFGQGRSLYQLMDK-CRSTVGKKCLRKWF 327
Query: 338 KQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRI-SDIERLMHNLEKRRAGLQQIV- 395
+ P D +++ +R V F D ++ L I ++ L +K ++G Q++
Sbjct: 328 RNPTTDRDDLVSRQKCVHYFKQDW--NAEVTAKLSSILGRVKALNSVFQKFQSGTAQLIH 385
Query: 396 -KLYQSSIR-LPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKF--IALVETSVD 451
+ + S++ L I + ++Q + + KE P+ES D L + IA++ S+
Sbjct: 386 WECFVSTVNALVEILNIIRQ-----TPISKEF---PVES----DLLREVSEIAVIAGSI- 432
Query: 452 LDQLEN---GEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKG 508
++ E+ G + + D L +++ E++ + ++ KQ + L LP +
Sbjct: 433 INFAESKIQGRVTVMNGIDEELDEIRDTYENMPMVLTAIAKQEEARLGLPPYSNVACVYI 492
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQ 568
G V + + + + +T ++ T +D ++ N +L D++ +L + Q
Sbjct: 493 PLVGFVLSVPRDYGVESQPDMT---LLYSTHED-LRVRNATTSRLDDEFGDILMRLIDSQ 548
Query: 569 KELVNRVIQTAVTFSE--IFKSLATMLSELDVLLSFADLAS----SCPTPYTRPDINPPD 622
++ ++T V + I K L ++ S +DVL+SF +A+ +CP P I +
Sbjct: 549 TAII-LTLKTRVMKKKRSIIK-LLSIASRIDVLISFGLIAAQNGWNCPALVDEPVIEAVE 606
Query: 623 VGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM 682
+ HP +F+PN R IITGPN GKS +++ +G+ + +
Sbjct: 607 L--------YHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFL 658
Query: 683 AQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIID 742
+ +GSFVP A I + D I R+ D L G+STF +++ + A L+ AT SL+IID
Sbjct: 659 SHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVIID 718
Query: 743 ELGRGTSTYDGFGLAWAICEHLVEE--IRAPTLF-ATHFHELTALAHENANEFNTKQMVG 799
E G+GT T G L ++ + + R P +F ++HFH AL + E N
Sbjct: 719 EFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFH---ALPNYIPLETN------ 769
Query: 800 VANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 859
+A + + K+ L+++ PG D SF + VA+ P V+ +A +
Sbjct: 770 IATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEGIPPPVIG----RACRIYKA 825
Query: 860 TPSAVISDDAKIEVGS-KRKRISDPNDM 886
+ + + K EV + K++ + D+
Sbjct: 826 LKAGTLLKEIKAEVSNDNEKQLVEDMDV 853
Score = 38 (18.4 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 866 SDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEFSDMPLETM 908
SD K + +R + S + + + ++ D P ET+
Sbjct: 1089 SDPFKTPISDRRSQQSSRHSTPKNRSMNQSLIQSARDTPHETI 1131
Score = 37 (18.1 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 220 TERKKTEFKTRDLVQDLDR 238
TE KKT + R L Q +D+
Sbjct: 295 TENKKTFGQGRSLYQLMDK 313
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 345 (126.5 bits), Expect = 8.0e-29, P = 8.0e-29
Identities = 121/451 (26%), Positives = 200/451 (44%)
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQESLERQI 484
+ D + +DD L+ +L+ VD + L + + + D + K L +
Sbjct: 22 FRDIAQEFSDD--LHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFL 79
Query: 485 HSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
+ ++ +LD +P + + + R+ E + F+ L K
Sbjct: 80 TEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLH 139
Query: 543 VKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL 600
+ TK L L GD + ++ ++ +L +V+ A + + LA S LDVLL
Sbjct: 140 YRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLL 195
Query: 601 SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI 660
+ A A Y+RP +P +G + ++ RHP +E F+PN + K ++
Sbjct: 196 ALASAARDYG--YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKV 251
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
ITGPN GKS +++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM
Sbjct: 252 ITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFM 311
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHF 778
++ + A + AT +SL++IDE G+GT+T DG L A+ H L P +F AT+F
Sbjct: 312 IDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNF 371
Query: 779 HELTALAHENANEFNTKQMV--GVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVA 836
L L Q++ G +++ L Y+V G S H A
Sbjct: 372 LSLVQL-----------QLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTA 420
Query: 837 EFANFPESVVTLAREKAAELEDFTPSAVISD 867
A P+ +V +E + + P + D
Sbjct: 421 AQAGLPDKLVARGKEVSDLIRSGKPIKPVKD 451
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 331 (121.6 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 106/366 (28%), Positives = 173/366 (47%)
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQESLERQI 484
+ D + +DD L+ +L+ VD + L + + + D + K L +
Sbjct: 34 FRDIAQEFSDD--LHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFL 91
Query: 485 HSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
+ ++ +LD +P + + + R+ E + F+ L K
Sbjct: 92 TEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLH 151
Query: 543 VKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL 600
+ TK L L GD + ++ ++ +L +V+ A + + LA S LDVLL
Sbjct: 152 YRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLL 207
Query: 601 SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI 660
+ A A Y+RP +P +G + ++ RHP +E F+PN + K ++
Sbjct: 208 ALASAARDYG--YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKV 263
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
ITGPN GKS +++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM
Sbjct: 264 ITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFM 323
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHF 778
++ + A + AT +SL++IDE G+GT+T DG L A+ H L P +F AT+F
Sbjct: 324 IDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNF 383
Query: 779 HELTAL 784
L L
Sbjct: 384 LSLVQL 389
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 345 (126.5 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 121/451 (26%), Positives = 200/451 (44%)
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQESLERQI 484
+ D + +DD L+ +L+ VD + L + + + D + K L +
Sbjct: 34 FRDIAQEFSDD--LHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFL 91
Query: 485 HSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
+ ++ +LD +P + + + R+ E + F+ L K
Sbjct: 92 TEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLH 151
Query: 543 VKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL 600
+ TK L L GD + ++ ++ +L +V+ A + + LA S LDVLL
Sbjct: 152 YRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLL 207
Query: 601 SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI 660
+ A A Y+RP +P +G + ++ RHP +E F+PN + K ++
Sbjct: 208 ALASAARDYG--YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKV 263
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
ITGPN GKS +++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM
Sbjct: 264 ITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFM 323
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHF 778
++ + A + AT +SL++IDE G+GT+T DG L A+ H L P +F AT+F
Sbjct: 324 IDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNF 383
Query: 779 HELTALAHENANEFNTKQMV--GVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVA 836
L L Q++ G +++ L Y+V G S H A
Sbjct: 384 LSLVQL-----------QLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTA 432
Query: 837 EFANFPESVVTLAREKAAELEDFTPSAVISD 867
A P+ +V +E + + P + D
Sbjct: 433 AQAGLPDKLVARGKEVSDLIRSGKPIKPVKD 463
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 345 (126.5 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 121/451 (26%), Positives = 200/451 (44%)
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQESLERQI 484
+ D + +DD L+ +L+ VD + L + + + D + K L +
Sbjct: 59 FRDIAQEFSDD--LHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFL 116
Query: 485 HSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
+ ++ +LD +P + + + R+ E + F+ L K
Sbjct: 117 TEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLH 176
Query: 543 VKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL 600
+ TK L L GD + ++ ++ +L +V+ A + + LA S LDVLL
Sbjct: 177 YRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLL 232
Query: 601 SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI 660
+ A A Y+RP +P +G + ++ RHP +E F+PN + K ++
Sbjct: 233 ALASAARDYG--YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKV 288
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
ITGPN GKS +++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM
Sbjct: 289 ITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFM 348
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHF 778
++ + A + AT +SL++IDE G+GT+T DG L A+ H L P +F AT+F
Sbjct: 349 IDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNF 408
Query: 779 HELTALAHENANEFNTKQMV--GVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVA 836
L L Q++ G +++ L Y+V G S H A
Sbjct: 409 LSLVQL-----------QLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTA 457
Query: 837 EFANFPESVVTLAREKAAELEDFTPSAVISD 867
A P+ +V +E + + P + D
Sbjct: 458 AQAGLPDKLVARGKEVSDLIRSGKPIKPVKD 488
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 326 (119.8 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 84/234 (35%), Positives = 127/234 (54%)
Query: 553 LGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTP 612
LGD + ++ ++ +L +V+ A + + LA S LDVLL+ A A
Sbjct: 22 LGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG-- 75
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTF 672
Y+RP +P +G + ++ RHP +E F+PN + K ++ITGPN GKS +
Sbjct: 76 YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIY 133
Query: 673 IRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732
++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM ++ + A +
Sbjct: 134 LKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNN 193
Query: 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHFHELTAL 784
AT +SL++IDE G+GT+T DG L A+ H L P +F AT+F L L
Sbjct: 194 ATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 247
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 326 (119.8 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 84/234 (35%), Positives = 127/234 (54%)
Query: 553 LGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTP 612
LGD + ++ ++ +L +V+ A + + LA S LDVLL+ A A
Sbjct: 15 LGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG-- 68
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTF 672
Y+RP +P +G + ++ RHP +E F+PN + K ++ITGPN GKS +
Sbjct: 69 YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIY 126
Query: 673 IRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732
++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM ++ + A +
Sbjct: 127 LKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNN 186
Query: 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHFHELTAL 784
AT +SL++IDE G+GT+T DG L A+ H L P +F AT+F L L
Sbjct: 187 ATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 240
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 326 (119.8 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 84/234 (35%), Positives = 127/234 (54%)
Query: 553 LGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTP 612
LGD + ++ ++ +L +V+ A + + LA S LDVLL+ A A
Sbjct: 14 LGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG-- 67
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTF 672
Y+RP +P +G + ++ RHP +E F+PN + K ++ITGPN GKS +
Sbjct: 68 YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIY 125
Query: 673 IRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732
++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM ++ + A +
Sbjct: 126 LKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNN 185
Query: 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHFHELTAL 784
AT +SL++IDE G+GT+T DG L A+ H L P +F AT+F L L
Sbjct: 186 ATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 239
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 337 (123.7 bits), Expect = 8.3e-28, P = 8.3e-28
Identities = 121/452 (26%), Positives = 200/452 (44%)
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQESLERQI 484
+ D + +DD L+ +L+ VD + L + + + D + K L +
Sbjct: 22 FRDIAQEFSDD--LHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFL 79
Query: 485 HSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
+ ++ +LD +P + + + R+ E + F+ L K
Sbjct: 80 TEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLH 139
Query: 543 VKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL 600
+ TK L L GD + ++ ++ +L +V+ A + + LA S LDVLL
Sbjct: 140 YRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLL 195
Query: 601 SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI 660
+ A A Y+RP +P +G + ++ RHP +E F+PN + K ++
Sbjct: 196 ALASAARDYG--YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKV 251
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
ITGPN GKS +++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM
Sbjct: 252 ITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFM 311
Query: 721 QEM-LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATH 777
++ + A + AT +SL++IDE G+GT+T DG L A+ H L P +F AT+
Sbjct: 312 IDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATN 371
Query: 778 FHELTALAHENANEFNTKQMV--GVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHV 835
F L L Q++ G +++ L Y+V G S H
Sbjct: 372 FLSLVQL-----------QLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHT 420
Query: 836 AEFANFPESVVTLAREKAAELEDFTPSAVISD 867
A A P+ +V +E + + P + D
Sbjct: 421 AAQAGLPDKLVARGKEVSDLIRSGKPIKPVKD 452
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 350 (128.3 bits), Expect = 8.8e-28, Sum P(2) = 8.8e-28
Identities = 131/463 (28%), Positives = 213/463 (46%)
Query: 481 ERQIHSLHKQTASDLDLPVDKAL-KLDKGT---QFGHVFRITKKEEPKIRKKLTTQFIVL 536
E QI L+ T D K+L KL Q G++ I+ EP + Q+ +
Sbjct: 452 ETQIFLLN--TMPQEDCKTTKSLEKLVNAVYIPQLGYLVTISVLMEPLLDGIPNLQWEEI 509
Query: 537 ETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSEL 596
+ + F N ++ +L + Y + + + E++ + + + + +LSEL
Sbjct: 510 FRSSENIYFKNGRVLELDETYGDIYGAISDFEIEILFSLQEQILRRKTQLTAYNILLSEL 569
Query: 597 DVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEA-QDWVNFIPN----DCKL 651
++LLSFA + S Y P + + I+ G RH E D N+IPN D L
Sbjct: 570 EILLSFAQV--SAERNYAEPQLVEDECILEIING-RHALYETFLD--NYIPNSTMIDGGL 624
Query: 652 IRGKSWFQ-------IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFA 704
SW + ++TG N GKS ++ Q G+ + +AQ+G FVP +RA I + D I
Sbjct: 625 FSELSWCEQNKGRIIVVTGANASGKSVYLTQNGLIVYLAQIGCFVPAERARIGIADKILT 684
Query: 705 RVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764
R+ + + S+F+ + + A L AT++SLI+IDE G+GT DG L +I ++
Sbjct: 685 RIRTQETVYKTQSSFLLDSQQMAKSLSLATEKSLILIDEYGKGTDILDGPSLFGSIMLNM 744
Query: 765 VEEIRAPTLFA-THFHEL--TALAHENAN---EFNTKQMVGVA-NYHVSAHI--DSTSRK 815
+ + P + A THFHEL + EN + T ++ N +AH+ D S
Sbjct: 745 SKSEKCPRIIACTHFHELFNENVLTENIKGIKHYCTDILISQKYNLLETAHVGEDHESEG 804
Query: 816 LTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGS 875
+T L+KV+ G QSFGI+ A+ +V E+A EL DD + G+
Sbjct: 805 ITFLFKVKEGISKQSFGIYCAKVCGLSRDIV----ERAEELSRMINRG---DDVVQQCGN 857
Query: 876 KRKRISDPNDMSRGAARAHQFLKEFSDMPLETMDLKEALERVK 918
++ + + + +FL D+ LET E L R+K
Sbjct: 858 LTEK--EMREFQKNQEIVKKFLSW--DLDLETTTTSENL-RLK 895
Score = 183 (69.5 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 107/475 (22%), Positives = 198/475 (41%)
Query: 282 IRKYSLDSYMRLDSAAMRALNVLES-------KTDANKNFSLFGLMNRTCTAGMGKRLLH 334
IR + M LD + AL++ + K N FS+F L N+ ++ +R+L
Sbjct: 238 IRYIDIRDRMVLDENTISALHIFPTAHKLGHDKMMRNGFFSVFELFNQV-SSDYARRILK 296
Query: 335 MWLKQPLLDVNEINARLDIVQAFVD--DTALRQDLRQHLKRISDIERLMHNLEKRRAGL- 391
WL PL + I R I++ +D + + DL Q +KR D ++ L ++ L
Sbjct: 297 SWLINPLTNKKRIETRYSIIRTLLDKQNAIIFSDLSQSIKRCPDAFGFINQLRSGKSTLG 356
Query: 392 --QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETS 449
++ + I + + S+L+ G + I L +++ D L + + VET
Sbjct: 357 TWSKVASFLEKGIAIFQLVSSLKL--GSDEANI----LHDIKNKVDISALKECLRKVETV 410
Query: 450 VDLDQLENGEYM-ISSSYDTGLSALKNEQESLERQIHSLHKQTASDL-------DLPVDK 501
+D D + + + I++ D L +N LE + + ++T L D K
Sbjct: 411 IDFDTSRDTKTLTINTGVDNRLDECRNIYNHLEGILLDVARETQIFLLNTMPQEDCKTTK 470
Query: 502 AL-KLDKGT---QFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQY 557
+L KL Q G++ I+ EP + Q+ + + + F N ++ +L + Y
Sbjct: 471 SLEKLVNAVYIPQLGYLVTISVLMEPLLDGIPNLQWEEIFRSSENIYFKNGRVLELDETY 530
Query: 558 QKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPD 617
+ + + E++ + + + + +LSEL++LLSFA + S Y P
Sbjct: 531 GDIYGAISDFEIEILFSLQEQILRRKTQLTAYNILLSELEILLSFAQV--SAERNYAEPQ 588
Query: 618 INPPDVGDIILEGSRHPCVEA-QDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQV 676
+ + I+ G RH E D N+IPN +I G + ++ G+ +
Sbjct: 589 LVEDECILEIING-RHALYETFLD--NYIPNST-MIDGGLFSELSWCEQNKGRIIVVTGA 644
Query: 677 ---GVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETAS 728
G ++ + Q G V + V AR+G D L + T + + +T S
Sbjct: 645 NASGKSVYLTQNGLIVYLAQIGCFV-PAERARIGIADKILTRIRT-QETVYKTQS 697
Score = 47 (21.6 bits), Expect = 8.8e-28, Sum P(2) = 8.8e-28
Identities = 29/130 (22%), Positives = 53/130 (40%)
Query: 226 EFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALG-ALLSYAELLSDESNYGNYYIRK 284
EF D ++ D S + ++V + + G LG ++L Y + +Y + K
Sbjct: 35 EFNEGDTNREEDSSTIFSFDFDEEIVMCIDFSGGKLGCSILDYHTKTLKAFDQ-DYVVNK 93
Query: 285 YSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL-LD 343
++ S+ +D A M S D + L +M T + L W+ +
Sbjct: 94 TTISSHDLIDDADM-------SSNDISLLLGLL-IMEANPTVCLVPARLEDWIFDYIKTK 145
Query: 344 VNEINARLDI 353
+EIN RL++
Sbjct: 146 CDEINCRLEL 155
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 331 (121.6 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 106/366 (28%), Positives = 173/366 (47%)
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQESLERQI 484
+ D + +DD L+ +L+ VD + L + + + D + K L +
Sbjct: 22 FRDIAQEFSDD--LHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFL 79
Query: 485 HSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
+ ++ +LD +P + + + R+ E + F+ L K
Sbjct: 80 TEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLH 139
Query: 543 VKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL 600
+ TK L L GD + ++ ++ +L +V+ A + + LA S LDVLL
Sbjct: 140 YRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLL 195
Query: 601 SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI 660
+ A A Y+RP +P +G + ++ RHP +E F+PN + K ++
Sbjct: 196 ALASAARDYG--YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKV 251
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
ITGPN GKS +++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM
Sbjct: 252 ITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFM 311
Query: 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATHF 778
++ + A + AT +SL++IDE G+GT+T DG L A+ H L P +F AT+F
Sbjct: 312 IDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNF 371
Query: 779 HELTAL 784
L L
Sbjct: 372 LSLVQL 377
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 323 (118.8 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 106/367 (28%), Positives = 173/367 (47%)
Query: 426 YLDPLESLTDDDHLNKFIALVETSVDLD-QLENGEYMISSSYDTGLSALKNEQESLERQI 484
+ D + +DD L+ +L+ VD + L + + + D + K L +
Sbjct: 22 FRDIAQEFSDD--LHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFL 79
Query: 485 HSLHKQTASDLD--LPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDG 542
+ ++ +LD +P + + + R+ E + F+ L K
Sbjct: 80 TEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLH 139
Query: 543 VKFTNTK-LKKL-GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL 600
+ TK L L GD + ++ ++ +L +V+ A + + LA S LDVLL
Sbjct: 140 YRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL-DLA---SRLDVLL 195
Query: 601 SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI 660
+ A A Y+RP +P +G + ++ RHP +E F+PN + K ++
Sbjct: 196 ALASAARDYG--YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKV 251
Query: 661 ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720
ITGPN GKS +++QVG+ MA VGSFVP + A I D IF R+ + + G+STFM
Sbjct: 252 ITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFM 311
Query: 721 QEM-LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTLF-ATH 777
++ + A + AT +SL++IDE G+GT+T DG L A+ H L P +F AT+
Sbjct: 312 IDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATN 371
Query: 778 FHELTAL 784
F L L
Sbjct: 372 FLSLVQL 378
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 260 (96.6 bits), Expect = 5.6e-19, P = 5.6e-19
Identities = 89/333 (26%), Positives = 152/333 (45%)
Query: 545 FTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFAD 604
+ N + +L D Y + EE + + E++ + + +L ELD LL+ A
Sbjct: 108 YKNRTMVELDDMYGDLTEEIADEEIEVIVELAGAVSEHEDALIRALEVLGELDSLLALAF 167
Query: 605 LASSCPTPYTRPDINPPDVGDI---------ILEGSRHP--CVEAQDWVNFIPNDCKLIR 653
A + P + ++ DI +L S P C+ + N+ +
Sbjct: 168 AAEKYN--WAAPKMTSENIIDIEGGRHPLQELLVPSFIPNDCILRGGCASENGNEIDFVG 225
Query: 654 GKSWFQ-----IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGA 708
K + ++TGPN GKS +++QV + I +A +GS+VP RA+I V D IF RV
Sbjct: 226 VKDEPKEPSALVLTGPNNSGKSIYMKQVALIIYLAHIGSYVPVTRATIGVTDRIFTRVAT 285
Query: 709 GDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE-E 767
+ + S FM ++ + A + AT RSLI+ DE G+GT+ G + A H +E +
Sbjct: 286 RETAMDDESAFMTDLKQAAFSINFATRRSLILADEFGKGTTMEAGAAVFTAYLHHFLELD 345
Query: 768 IRAPT-LFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK--LTMLYKVEP 824
P L +THFH++ N ++ V A+ V + ++ R+ +T LY++
Sbjct: 346 ADRPRMLVSTHFHDVF-----NRGFLKPEEGVAYAHMEVRLNPEAEEREEHITYLYRLVH 400
Query: 825 GACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
G + S G+ A + + V+ A + LE
Sbjct: 401 GRAEHSLGLMCAAINHIEDDVLKRAGDILGMLE 433
>UNIPROTKB|C9J809 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0006119 "oxidative phosphorylation"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008340 "determination of adult lifespan" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0030183 "B
cell differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
Pfam:PF01624 Pfam:PF05188 GO:GO:0005524 GO:GO:0008340 GO:GO:0006915
GO:GO:0042493 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0007283 GO:GO:0016887 GO:GO:0006119
GO:GO:0008584 GO:GO:0006298 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045910
GO:GO:0006301 GO:GO:0031573 GO:GO:0016446 EMBL:AC079775
GO:GO:0032137 GO:GO:0032301 EMBL:AC138655 HGNC:HGNC:7325
ChiTaRS:MSH2 IPI:IPI00783458 ProteinModelPortal:C9J809 SMR:C9J809
STRING:C9J809 Ensembl:ENST00000454849 HOGENOM:HOG000122061
ArrayExpress:C9J809 Bgee:C9J809 Uniprot:C9J809
Length = 140
Score = 239 (89.2 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 52/133 (39%), Positives = 79/133 (59%)
Query: 71 GSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSN-------WRLVKSGTPGNLG 123
G+ L SV +SK FE+ +DLLL R + +E+Y+ N W L +PGNL
Sbjct: 5 GAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGNLS 63
Query: 124 SYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVES 183
+ED+LF NN+M + +V + + + +G+GYVD +R LGL EF D+ F+N+E+
Sbjct: 64 QFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEA 123
Query: 184 ALVALGCKECLLP 196
L+ +G KEC+LP
Sbjct: 124 LLIQIGPKECVLP 136
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 246 (91.7 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 73/244 (29%), Positives = 119/244 (48%)
Query: 556 QYQKVLEEYKNCQKELVNRVI----QTAVTFSEIFKSLATMLSELDVLLSFADLASSCPT 611
+ L+E + +K+ + R++ + ++I S +++ LD + + A A
Sbjct: 232 ELNNALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKA 291
Query: 612 PYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI-ITGPNMGGKS 670
T+P +N D L +RHP ++ + +PN+ L GK + I ITGPN GGK+
Sbjct: 292 --TKPIVNNERYMD--LRQARHPLIDPEV---IVPNNIML--GKDFTTIVITGPNTGGKT 342
Query: 671 TFIRQVGVNILMAQVGSFVPC-DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASI 729
++ VG+ +LMAQ G +P D + I V IFA +G + +STF M+ I
Sbjct: 343 VTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDI 402
Query: 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENA 789
L+ A SL++ DELG GT +G LA +I + + A + TH+ EL A +
Sbjct: 403 LEKADFESLVLFDELGAGTDPQEGAALAISILDEVCNR-GARVVATTHYPELKAYGYNRE 461
Query: 790 NEFN 793
N
Sbjct: 462 QVIN 465
Score = 55 (24.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 27/111 (24%), Positives = 54/111 (48%)
Query: 361 TALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIR--LPYIRSALQQYE-GQ 417
++L +D +HL +D E ++ ++ ++++L S+ + IRS +++ + G
Sbjct: 24 SSLGRDKVKHLVPSTDFEEIVE-MQDTTDEAAKVIRLKGSAPLGGITDIRSNVKRAKIG- 81
Query: 418 FSSLIKERYLDPLESLTDDDHLNKFIA-LVETSVDLDQLENGEYMISSSYD 467
S L LD ++ ++ +FI +V+ V+L LE I S YD
Sbjct: 82 -SMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPILETHVAQIVSLYD 131
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 219 (82.2 bits), Expect = 8.8e-17, P = 8.8e-17
Identities = 43/86 (50%), Positives = 62/86 (72%)
Query: 662 TGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQ 721
+GPNMGGKST +RQ + ++AQVG++VP + ++S D +F R+GA D + G STF
Sbjct: 1 SGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSPVDSLFVRMGARDSIMTGQSTFFI 60
Query: 722 EMLETASILKGATDRSLIIIDELGRG 747
E+ ETA++L AT SL+++DELGRG
Sbjct: 61 ELAETAAMLARATPDSLVVLDELGRG 86
>UNIPROTKB|H7C2J4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
SMART:SM00533 GO:GO:0005524 EMBL:AL662899 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HGNC:HGNC:7328 ChiTaRS:MSH5
ProteinModelPortal:H7C2J4 Ensembl:ENST00000423982 Bgee:H7C2J4
Uniprot:H7C2J4
Length = 637
Score = 241 (89.9 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 93/414 (22%), Positives = 185/414 (44%)
Query: 283 RKYSLDSYMRLDSAAMRALNVLESKTDAN---------KNFSLFGLMNRTCTAGMGKRLL 333
+K+ L + +D L + +S++ + + SLFG++NR C G++LL
Sbjct: 212 KKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNR-CHCKWGEKLL 270
Query: 334 HMWLKQPLLDVNEINARLDIVQAFV--DDTALRQDLRQHLKRISDIERLMHNLEKRRAGL 391
+W +P D+ E+++RLD++Q F+ + + Q L + L I ++ ++ ++ +
Sbjct: 271 RLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKV 330
Query: 392 QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451
LY++ +R A + S+ + + D + +DD L+ +L+ VD
Sbjct: 331 SDWQVLYKTVYSALGLRDACRSLP---QSI--QLFRDIAQEFSDD--LHHIASLIGKVVD 383
Query: 452 LD-QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLD--LPVDKALKLDKG 508
+ L + + + D + K L + + ++ +LD +P + +
Sbjct: 384 FEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLI 443
Query: 509 TQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK-LKKL-GDQYQKVLEEYKN 566
+ R+ E + F+ L K + TK L L GD + ++ ++
Sbjct: 444 GFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETL 503
Query: 567 CQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDI 626
+L +V+ A + + LA S LDVLL+ A A Y+RP +P +G +
Sbjct: 504 LMYQLQCQVLARAAVLTRVL-DLA---SRLDVLLALASAARDYG--YSRPRYSPQVLG-V 556
Query: 627 ILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680
++ RHP +E F+PN + K ++ITGPN GKS +++Q+ +++
Sbjct: 557 RIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIYLKQLRIHL 609
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 217 (81.4 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 49/111 (44%), Positives = 68/111 (61%)
Query: 660 IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG--------AG-- 709
++TGPNM GKST+++QVG+ +++AQ G VP + + R+G AG
Sbjct: 1 LVTGPNMSGKSTYLQQVGLLVVLAQAGCPVPAAHCCLPPFTALLGRLGTAMGGGAGAGGG 60
Query: 710 -DCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWA 759
D G S+F+ EM + A +L A RSL+++DELGRGTST DG GLAWA
Sbjct: 61 ADDLESGRSSFLTEMQDAAHVLSAAGPRSLVLLDELGRGTSTADGVGLAWA 111
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 235 (87.8 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 96/358 (26%), Positives = 161/358 (44%)
Query: 583 SEIFKSLATMLSELD----VLLSFADLASSCPTPYTRPDINP--PDVGDIILEGSRHPCV 636
+EI SLA ++E+ +L F + + + P D G + L +RHP +
Sbjct: 253 AEISASLAAWINEIHHNTFILGRFDFIFAKARFGKAMKAVTPHLSDAGVVHLIAARHPLL 312
Query: 637 EAQDWVNFIPNDCKLIRGKSWFQI-ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRAS 695
+A + ND L G+ + I ITGPN GGK+ ++ +G+ LMAQ G +P S
Sbjct: 313 DA---AKVVANDIYL--GEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDS 367
Query: 696 -ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGF 754
I+V + +FA +G + +STF M SIL +SLI+ DELG GT +G
Sbjct: 368 TIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGA 427
Query: 755 GLAWAICEHLVEEIRAPTLFAT-HFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTS 813
LA AI + + ++ AT H+ EL A + + N A ++
Sbjct: 428 ALAIAILD--ASHAKGASVVATTHYPELKAYGYNRVHATN-------------ASVEFNV 472
Query: 814 RKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISD-DAKIE 872
L+ YK+ G +S ++ E+++T AR + E + +IS + K
Sbjct: 473 ETLSPTYKLLIGVPGRSNAFDISRRLGLSENIITEARS-LVDTESADLNDMISSLEEKRN 531
Query: 873 VGSKRKRISDPNDMSRGAARAHQFL-KEFSDMPLETMDL-KEALERVKRMKDDLEKDA 928
+ + +++RGA + L KE S+ + L ++A E+ + + E +A
Sbjct: 532 LAETE--YEEARELARGAGNLLKDLQKEISNYYQQKDKLIEQASEKAATIVEKAEAEA 587
Score = 49 (22.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 517 ITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEY---KNCQKELVN 573
+ K+ E I + VL+T + + L++ D+ ++ LE Y +N K L +
Sbjct: 128 VLKEVEEDIAISVDESGKVLDTASEALSTIRRTLRRTEDRVREKLESYLRDRNASKMLSD 187
Query: 574 RVI 576
VI
Sbjct: 188 AVI 190
Score = 45 (20.9 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 30/136 (22%), Positives = 57/136 (41%)
Query: 298 MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIV--- 354
+ L + + ++ + + MN G+ LL L LL + E+ + I
Sbjct: 84 LNGLEIYQIGSNLRVSRQMKNFMNDLLEIGVELPLLGA-LSDELLVLKEVEEDIAISVDE 142
Query: 355 QAFVDDTALR--QDLRQHLKRISDI--ERLMHNLEKRRAGLQQIVKLYQSSIRLP-YIRS 409
V DTA +R+ L+R D E+L L R A +++ +IR Y+
Sbjct: 143 SGKVLDTASEALSTIRRTLRRTEDRVREKLESYLRDRNAS--KMLSDAVITIRNDRYVIP 200
Query: 410 ALQQYEGQFSSLIKER 425
Q+Y+G + ++ ++
Sbjct: 201 VKQEYKGHYGGIVHDQ 216
Score = 37 (18.1 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 399 QSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFI 443
QS + L R ALQ E Q I L + ++ H N FI
Sbjct: 228 QSVVDLNNERKALQAKEKQEIERILAEISASLAAWINEIHHNTFI 272
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 244 (91.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 85/297 (28%), Positives = 146/297 (49%)
Query: 568 QKELVNRVIQT-----AVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPD 622
+KE++ ++++ A +EI K +L E+D++++ A LA Y +P I+ +
Sbjct: 238 EKEIIEKILKDFTQRLACNLTEI-KRTYELLGEIDLIVAKARLALELDA-Y-KPRIS--E 292
Query: 623 VGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSW-FQIITGPNMGGKSTFIRQVGVNIL 681
G + + +RHP + + +P D L GK + IITGPN GGK+ ++ +G+ +
Sbjct: 293 NGVLSFKQARHPLLGKKA----VPFDLTL--GKEFDLLIITGPNTGGKTVTLKTIGILTI 346
Query: 682 MAQVGSFVPCD-RASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLII 740
MA+ G F+P I + ++ +G ++ +STF +L IL+ A + L++
Sbjct: 347 MARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVL 406
Query: 741 IDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGV 800
+DELG GT +G LA AI E L + + + TH EL A A E T++ V
Sbjct: 407 LDELGTGTDPREGAALAKAILEELRGK-KVKVVATTHTSELAAYAIE------TER---V 456
Query: 801 ANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
N S D S K T Y++ G +S +++A+ E ++ A+ E E
Sbjct: 457 EN--ASVEFDPESLKPT--YRLHIGKPGRSNALYIAQGLGLKEQIIEKAKSFLKEEE 509
Score = 39 (18.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 394 IVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLT 434
I KL+Q + P + AL+ S +I+E+ L+ E L+
Sbjct: 15 INKLWQKAESFPGKQLALKVRPLSDSKIIEEKLLEVEEGLS 55
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 244 (91.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 85/297 (28%), Positives = 146/297 (49%)
Query: 568 QKELVNRVIQT-----AVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPD 622
+KE++ ++++ A +EI K +L E+D++++ A LA Y +P I+ +
Sbjct: 238 EKEIIEKILKDFTQRLACNLTEI-KRTYELLGEIDLIVAKARLALELDA-Y-KPRIS--E 292
Query: 623 VGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSW-FQIITGPNMGGKSTFIRQVGVNIL 681
G + + +RHP + + +P D L GK + IITGPN GGK+ ++ +G+ +
Sbjct: 293 NGVLSFKQARHPLLGKKA----VPFDLTL--GKEFDLLIITGPNTGGKTVTLKTIGILTI 346
Query: 682 MAQVGSFVPCD-RASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLII 740
MA+ G F+P I + ++ +G ++ +STF +L IL+ A + L++
Sbjct: 347 MARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVL 406
Query: 741 IDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGV 800
+DELG GT +G LA AI E L + + + TH EL A A E T++ V
Sbjct: 407 LDELGTGTDPREGAALAKAILEELRGK-KVKVVATTHTSELAAYAIE------TER---V 456
Query: 801 ANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857
N S D S K T Y++ G +S +++A+ E ++ A+ E E
Sbjct: 457 EN--ASVEFDPESLKPT--YRLHIGKPGRSNALYIAQGLGLKEQIIEKAKSFLKEEE 509
Score = 39 (18.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 394 IVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLT 434
I KL+Q + P + AL+ S +I+E+ L+ E L+
Sbjct: 15 INKLWQKAESFPGKQLALKVRPLSDSKIIEEKLLEVEEGLS 55
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 221 (82.9 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 68/228 (29%), Positives = 114/228 (50%)
Query: 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLR 714
K+ +I+GPNMGGK+ ++ +G+ +LMAQ G FV ++A ++ D ++A +G
Sbjct: 307 KNRILLISGPNMGGKTALLKTLGLAVLMAQSGLFVAAEKALLAWPDRVYADIGDEQSLQE 366
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774
+STF + +L+ AT SL++IDELG GT +G L+ AI E L+E +
Sbjct: 367 NLSTFAGHLRRLREMLEEATSHSLVLIDELGSGTDPEEGAALSQAILEALLER-GVKGMV 425
Query: 775 ATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIH 834
TH L A A E G+ N S D + + T Y++ G +S+ +
Sbjct: 426 TTHLSPLKAFAQ--GRE-------GIQN--ASMRFDLEALRPT--YELVLGVPGRSYALA 472
Query: 835 VAEFANFPESVVTLAREKAAELEDFTPSAVIS--DDAKIEVGSKRKRI 880
+A PE V L R +A E A++ + ++ + ++R+R+
Sbjct: 473 IARRLALPEEV--LKRAEALLPEGGRLEALLERLEAERLALEAERERL 518
Score = 59 (25.8 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 44/176 (25%), Positives = 75/176 (42%)
Query: 335 MWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIE-----RLMHNLEKRRA 389
M LK+ LL + NA + + D T + +R+ L ++ RL + R
Sbjct: 93 MALKEELLPLK--NALSQVAEGIGDHTPFLERVRKALDEEGAVKDEASPRLAQIRRELRP 150
Query: 390 GLQQIV-KLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVET 448
QQI+ +LY R R A Q +F +L +ERY P+ + +A
Sbjct: 151 LRQQILDRLYALMDRH---REAFQD---RFVTLRRERYCVPVRA---------GMAQKVP 195
Query: 449 SVDLDQLENGEYMISSSY-----DTGLSALK-NEQESLERQIHSLHKQTASDLDLP 498
+ LD+ E+G + + + L AL+ E+E + R + L ++ A D +P
Sbjct: 196 GILLDESESGATLFIEPFSVVKLNNRLQALRLKEEEEVNRILRDLSERLAKDEGVP 251
>UNIPROTKB|A7UVX1 [details] [associations]
symbol:NCU10895 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 EMBL:AABX02000002
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 OrthoDB:EOG4VHPFT RefSeq:XP_001728471.1
ProteinModelPortal:A7UVX1 EnsemblFungi:EFNCRT00000000709
GeneID:5847835 KEGG:ncr:NCU10895 Uniprot:A7UVX1
Length = 625
Score = 221 (82.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 55/139 (39%), Positives = 78/139 (56%)
Query: 583 SEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWV 642
S + ++ ++ LD+L SF A++ Y RP I ++++ +RHP VEA+
Sbjct: 294 SSLMFDISDAIALLDMLSSFTQAATT--QDYVRPMITD----SMVIKQARHPIVEART-D 346
Query: 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCI 702
++ ND FQ+ITG NM GKSTFIR V + +MAQ+GSFVP ASIS+ D +
Sbjct: 347 QYVANDVYSGDQSGRFQVITGGNMSGKSTFIRSVALIQIMAQMGSFVPAQFASISICDRV 406
Query: 703 FARVGAGDCQLRGVSTFMQ 721
FARV D + TF Q
Sbjct: 407 FARVSTDDAPENNLGTFAQ 425
>UNIPROTKB|A8J417 [details] [associations]
symbol:CHLREDRAFT_175628 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 EMBL:DS496136
RefSeq:XP_001696056.1 ProteinModelPortal:A8J417 SMR:A8J417
EnsemblPlants:EDP01005 GeneID:5721674 KEGG:cre:CHLREDRAFT_175628
Uniprot:A8J417
Length = 594
Score = 210 (79.0 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 45/72 (62%), Positives = 51/72 (70%)
Query: 732 GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE-IRAPTLFATHFHELTALAHENAN 790
GAT SL+IIDELGRGTSTYDGFGLAWAI EHL AP LFATHFHELT L +
Sbjct: 505 GATSHSLVIIDELGRGTSTYDGFGLAWAISEHLAGPGCGAPCLFATHFHELTELRADVGV 564
Query: 791 EFNTKQMVGVAN 802
+ Q++ +AN
Sbjct: 565 Q--NMQVIAMAN 574
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 222 (83.2 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 72/232 (31%), Positives = 106/232 (45%)
Query: 660 IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTF 719
++TGPN GGKS+ +R + L+ G VP + A I D I + + D + G S+F
Sbjct: 765 LLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSSF 824
Query: 720 MQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779
EM E SI+ AT RSL++IDE+ RGT T G +A ++ E L + + +TH H
Sbjct: 825 QVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESL-DTSGCLGIVSTHLH 883
Query: 780 ELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFA 839
+ +L A K M G N V T +K+ G C +S A+
Sbjct: 884 GIFSLPL-TAKNITYKAM-GAEN--VEGQTKPT-------WKLTDGVCRESLAFETAKRE 932
Query: 840 NFPESVVTLAREKAAELEDFTPSA---VISDDAKIEVGSKRKRISDPNDMSR 888
PESV+ R +A L + A V+ D I + ++I P R
Sbjct: 933 GVPESVIQ--RAEALYLSVYAKDASAEVVKPDQIITSSNNDQQIQKPVSSER 982
Score = 41 (19.5 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 21 FLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSV 80
F S Y+T + + R Y + G + K+ TTA +++ T SD L+ +
Sbjct: 20 FRSSYRTYSSLKPSSPILLNRRY--SEGISCLRDGKSLKRITTASKKVKTSSDVLTDKDL 77
Query: 81 S 81
S
Sbjct: 78 S 78
>UNIPROTKB|B1N483 [details] [associations]
symbol:EHI_019060 "DNA mismatch repair protein mutS,
putative" species:5759 "Entamoeba histolytica" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 EMBL:DS571351 RefSeq:XP_001913998.1
ProteinModelPortal:B1N483 STRING:B1N483 GeneID:6219997
KEGG:ehi:EHI_019060 EuPathDB:AmoebaDB:EHI_019060 InParanoid:B1N483
Uniprot:B1N483
Length = 225
Score = 178 (67.7 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 54/193 (27%), Positives = 91/193 (47%)
Query: 682 MAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIII 741
MA +G V A I + IF + + D L +S F + ++ L+ ++ SL++I
Sbjct: 1 MALLGCGVCASNAQIPLFSHIFTKFSSSDSSLSSLSAFTTDCSLLSTSLRHLSNDSLLLI 60
Query: 742 DELGRGTSTYDGFGLAWAICEHLVE-EIRAP-TLFATHFHELTALAHENANEFNTKQMVG 799
DE G+GT DG L A +L AP T+ +THF ++ + + N+ +M
Sbjct: 61 DEFGKGTHPSDGLALFIATLRYLQSLGSNAPKTIISTHF--ISFFHYIDLNKCVPLKMDV 118
Query: 800 VANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 859
+ N ++ +T LY + G D S+GIH A A+ P S+++ A + A L
Sbjct: 119 LLN--------QSNNSITFLYHLVNGISDSSYGIHCARLAHLPSSLISRASQIATSLSTS 170
Query: 860 TPSAVISDDAKIE 872
+P +S +E
Sbjct: 171 SPILPLSSHLNLE 183
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 210 (79.0 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 97/361 (26%), Positives = 149/361 (41%)
Query: 539 RKDGVK-FTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELD 597
RK G + FT K++ +Y + + K EL+ + + +TML
Sbjct: 639 RKVGEEWFTTIKVENALTRYHEACDNAKRKVLELLRGLSSELQDKINVLVFCSTMLIITK 698
Query: 598 VLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQD--WV-----NFIPNDCK 650
L F ++ + P I+P ++ E S + W+ N I ND
Sbjct: 699 AL--FGHVSEGRRRGWVLPTISPLCKDNVTEEISSEMELSGTFPYWLDTNQGNAILNDVH 756
Query: 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGD 710
+ S F I+TGPN GGKS+ +R V L+ G VP A I D I + A D
Sbjct: 757 M---HSLF-ILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVIPHFDSIMLHMKAYD 812
Query: 711 CQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA 770
G S+F EM E S++ AT RSL++IDE+ RGT T G +A +I E L + +
Sbjct: 813 SPADGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIAGSIIERL-DNVGC 871
Query: 771 PTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQS 830
+ +TH H + L N + K M G + ID R + +K+ G C +S
Sbjct: 872 IGIISTHLHGIFDLPLSLHNT-DFKAM-G------TEIID---RCIQPTWKLMDGICRES 920
Query: 831 FGIHVAEFANFPESVVTLAREK--AAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSR 888
A P+ ++ A E A S+ + + I + + PN +
Sbjct: 921 LAFQTARKEGMPDLIIRRAEELYLAMSTNSKQTSSAVHHEISIANSTVNSLVEKPNYLRN 980
Query: 889 G 889
G
Sbjct: 981 G 981
Score = 38 (18.4 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 206 KTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSG 253
+TL D LTRCG + ++ + T+ + R + G P V G
Sbjct: 187 QTLDD-LTRCGYSVCIVEEIQGPTQARARK-GRFISGHAHPGSPYVFG 232
>UNIPROTKB|A8JDD7 [details] [associations]
symbol:CHLREDRAFT_121781 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 Pfam:PF00488 PROSITE:PS00486 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 EMBL:DS496161 RefSeq:XP_001700459.1 STRING:A8JDD7
EnsemblPlants:EDO98148 GeneID:5726009 KEGG:cre:CHLREDRAFT_121781
Uniprot:A8JDD7
Length = 96
Score = 168 (64.2 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 36/96 (37%), Positives = 57/96 (59%)
Query: 668 GKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETA 727
GKS + R V + +A +GS+VP A+I + D I AR V TFM ++ + +
Sbjct: 2 GKSCYARAVALIAYLAHLGSYVPAQAATIGLADRIAARCATPPLGAATV-TFMADLTQVS 60
Query: 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763
++L+ AT+R+L+++DE G+GT DG GL A+ H
Sbjct: 61 AMLRTATERTLLVLDEFGKGTLASDGVGLCAALLTH 96
>WB|WBGene00003420 [details] [associations]
symbol:msh-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 167 (63.8 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 41/110 (37%), Positives = 61/110 (55%)
Query: 706 VGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765
+G D +R S F EM + A+I++ A SL+++DEL R TST +G + +AICE ++
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 766 EEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK 815
+ + + T ATHF ++ ALA N N + NYH ID S K
Sbjct: 61 K-LHSYTFLATHFLDIAALA----NYSNA-----IDNYHFLPQIDDNSTK 100
>UNIPROTKB|Q22103 [details] [associations]
symbol:msh-4 "Protein MSH-4" species:6239 "Caenorhabditis
elegans" [GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 167 (63.8 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 41/110 (37%), Positives = 61/110 (55%)
Query: 706 VGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765
+G D +R S F EM + A+I++ A SL+++DEL R TST +G + +AICE ++
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 766 EEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRK 815
+ + + T ATHF ++ ALA N N + NYH ID S K
Sbjct: 61 K-LHSYTFLATHFLDIAALA----NYSNA-----IDNYHFLPQIDDNSTK 100
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 188 (71.2 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 71/272 (26%), Positives = 123/272 (45%)
Query: 660 IITGPNMGGKSTFIRQVGVNILMAQVGSFVPC-DRASISVRDCIFARVGAGDCQLRGVST 718
+ITGPN GGK+ ++ G+ LMA G VP +S + + +G + +ST
Sbjct: 345 VITGPNAGGKTISLKTTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQSLST 404
Query: 719 FMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778
F + A IL+ A R+++++DELG GT G ++ A+ L ++ A + TH
Sbjct: 405 FSAHVSNIAGILERADRRTVVLLDELGTGTEPVQGAAISCAVLADLQDK-GALVIATTHL 463
Query: 779 HELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEF 838
++ H+ G+ N A ++ + LT LY++ G QS + +A
Sbjct: 464 TDIVGFVHKRD---------GMVN----ASMEFDRQTLTPLYRLTVGEPGQSHALEIARR 510
Query: 839 ANFPESVVTLAREKAAELE-DFTPS-AVISDDAKI--EVGSKRKRISDPNDMSRGAARAH 894
P+ VV +A + +E +F A + D + E ++ +R+ D A A
Sbjct: 511 YGLPDRVVAVATGMLSRMETEFHELLAELKDQRRRHEEALAEAERLR--RDAEEKARIAR 568
Query: 895 QFLKEFSDMPLETMD--LKEALERVKRMKDDL 924
+ L E E + L+EA E V+ + D+
Sbjct: 569 ERLAEAETRRREATEKALQEAKEIVRAARRDV 600
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 188 (71.2 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 97/397 (24%), Positives = 173/397 (43%)
Query: 471 SALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEP---KIRK 527
SA E + + I S+ + L K L ++ F I+KK++ I+
Sbjct: 144 SAASKELKRIRNNIDSVDGKIKERLT----KFLNSSANKKYIQEFFISKKDDRYTIPIKS 199
Query: 528 KLTTQF---IVLETRKDGVKF----TNTKLK-KLGD-QYQKVLEEYKNCQKELVNRVIQT 578
Q IV + K F T TKL +L + ++ +EEY+ L V++
Sbjct: 200 SYKNQVAGSIVEASAKGSTVFIEPHTVTKLNAELASLKAEEAMEEYQ-ILATLSGMVVEN 258
Query: 579 AVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEA 638
K ++S+ D++ + A + S P +N D G I L +HP +
Sbjct: 259 IYHI----KINMELISQYDMVFAKAKFSKSIDG--IEPKLN--DHGHIHLVNCKHPLLSG 310
Query: 639 QDWVNFIPNDCKLIRGKSWFQ-IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRAS-I 696
+ +P + ++ G+++ IITGPN GGK+ ++ +G+ L G + D+ + I
Sbjct: 311 K----VVPLNFEI--GQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEI 364
Query: 697 SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGL 756
++ + +F +G +STF M + I++ + + +L++ DE+G GT +G L
Sbjct: 365 AIFENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAAL 424
Query: 757 AWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKL 816
A +I E T+ +TH+ E+ + E ++F ++A + S L
Sbjct: 425 AISILEEFYLA-GCITVASTHYGEIKRFS-EMHDDF------------MNAAMQFNSETL 470
Query: 817 TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKA 853
LYK+ G +S + +A N E V L R KA
Sbjct: 471 EPLYKLVIGKSGESNALWIANKMNVRERV--LKRAKA 505
Score = 41 (19.5 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 324 CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLK--RISDIERLM 381
C +G+GK L++ +P + + RL+ + A+ D H+ IS+I +
Sbjct: 22 CVSGLGKELINKL--EPSTSIKVVRNRLNET---TEARAIL-DAEGHVPFFGISNIASTI 75
Query: 382 HNLEK 386
LEK
Sbjct: 76 QKLEK 80
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 188 (71.2 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 97/397 (24%), Positives = 173/397 (43%)
Query: 471 SALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEP---KIRK 527
SA E + + I S+ + L K L ++ F I+KK++ I+
Sbjct: 144 SAASKELKRIRNNIDSVDGKIKERLT----KFLNSSANKKYIQEFFISKKDDRYTIPIKS 199
Query: 528 KLTTQF---IVLETRKDGVKF----TNTKLK-KLGD-QYQKVLEEYKNCQKELVNRVIQT 578
Q IV + K F T TKL +L + ++ +EEY+ L V++
Sbjct: 200 SYKNQVAGSIVEASAKGSTVFIEPHTVTKLNAELASLKAEEAMEEYQ-ILATLSGMVVEN 258
Query: 579 AVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEA 638
K ++S+ D++ + A + S P +N D G I L +HP +
Sbjct: 259 IYHI----KINMELISQYDMVFAKAKFSKSIDG--IEPKLN--DHGHIHLVNCKHPLLSG 310
Query: 639 QDWVNFIPNDCKLIRGKSWFQ-IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRAS-I 696
+ +P + ++ G+++ IITGPN GGK+ ++ +G+ L G + D+ + I
Sbjct: 311 K----VVPLNFEI--GQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEI 364
Query: 697 SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGL 756
++ + +F +G +STF M + I++ + + +L++ DE+G GT +G L
Sbjct: 365 AIFENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAAL 424
Query: 757 AWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKL 816
A +I E T+ +TH+ E+ + E ++F ++A + S L
Sbjct: 425 AISILEEFYLA-GCITVASTHYGEIKRFS-EMHDDF------------MNAAMQFNSETL 470
Query: 817 TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKA 853
LYK+ G +S + +A N E V L R KA
Sbjct: 471 EPLYKLVIGKSGESNALWIANKMNVRERV--LKRAKA 505
Score = 41 (19.5 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 324 CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLK--RISDIERLM 381
C +G+GK L++ +P + + RL+ + A+ D H+ IS+I +
Sbjct: 22 CVSGLGKELINKL--EPSTSIKVVRNRLNET---TEARAIL-DAEGHVPFFGISNIASTI 75
Query: 382 HNLEK 386
LEK
Sbjct: 76 QKLEK 80
>UNIPROTKB|Q8EYH8 [details] [associations]
symbol:LA_4236 "DNA mismatch repair protein ATPase
component" species:189518 "Leptospira interrogans serovar Lai str.
56601" [GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
GO:GO:0032300 EMBL:AE010300 GenomeReviews:AE010300_GR
RefSeq:NP_714416.1 ProteinModelPortal:Q8EYH8 GeneID:1153578
KEGG:lil:LA_4236 PATRIC:22389315 HOGENOM:HOG000117340 OMA:RERSLAC
ProtClustDB:CLSK575192 BioCyc:LINT189518:GJBB-3356-MONOMER
Uniprot:Q8EYH8
Length = 610
Score = 167 (63.8 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 65/236 (27%), Positives = 114/236 (48%)
Query: 593 LSELDVLLSFADLASSCPTPYTRPDINPPDVGDIIL-EGSRHPCVEAQDWVNFIPNDCKL 651
L+ D L SFA+L P Y P+I + + I +G HP + + V+ N
Sbjct: 375 LTLFDSLFSFANLKWMFPD-YCFPEILSENSKEGISGKGLFHPLIPSDSRVS---NPLDF 430
Query: 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDC 711
I ++ +ITG NM GK+T++R +GV +++ G VP + S+ V I + D
Sbjct: 431 IEEQN-VVLITGSNMSGKTTYLRTIGVASILSMAGGPVPASKFSLPVLK-IHTSMRNEDN 488
Query: 712 QLRGVSTFMQEMLETASILKGATDRS---LIIIDELGRGTSTYDGFGLAWAICEHLVEEI 768
G+S F E+ + I+K D++ L+++DE+ +GT+T + LA C+ +++E+
Sbjct: 489 LEEGISFFYAEVRRLSEIVKKIRDKNSSHLVLLDEILKGTNTRER-SLA---CKGILKEL 544
Query: 769 RA--PTLFAT-HFHELTALAHENANEFNTKQMVGVA--NYHVSAHIDSTSRKLTML 819
+ +F T H EL + F + + G +Y + + TS L +L
Sbjct: 545 KKNRTIVFVTSHDLELAKVEGVILKHFQEEVLDGTMYFDYKIREGLVETSNALRIL 600
Score = 42 (19.8 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 168 GLAEFLDDSHFTNVESALVAL 188
GL +LD + +N E L+AL
Sbjct: 132 GLFSWLDTTFTSNAEQKLIAL 152
>UNIPROTKB|A9WD22 [details] [associations]
symbol:Caur_0340 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633980.1 GeneID:5827953
KEGG:cau:Caur_0340 PATRIC:21411212 HOGENOM:HOG000020547 OMA:QGGKSTF
ProtClustDB:CLSK865139 BioCyc:CAUR324602:GIXU-343-MONOMER
Uniprot:A9WD22
Length = 505
Score = 160 (61.4 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 41/129 (31%), Positives = 65/129 (50%)
Query: 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQL 713
GKS I+TGPN GGK+ F+R VGV LM Q G FVP + ++ +F + +
Sbjct: 325 GKSLI-IVTGPNRGGKTVFLRSVGVAQLMMQCGMFVPAESFLANLTTGLFTHFKREEDKT 383
Query: 714 RGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTL 773
F +E+ + I+ T +L++++E T+ +G +A I L+E+
Sbjct: 384 MERGKFEEELARMSVIVDYLTPNALLLLNESFSATNEREGSEIARQIVSTLIEK-GIKVY 442
Query: 774 FATHFHELT 782
F TH +E T
Sbjct: 443 FVTHLYEFT 451
Score = 45 (20.9 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 29/107 (27%), Positives = 44/107 (41%)
Query: 404 LPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMIS 463
L +R Q+ F S R+ ++ DDD+LN LVE V + G ++S
Sbjct: 127 LRQLRLIADQHVNTFESQGFRRFFTMIQRELDDDYLN----LVEKHVQQLRFSRGT-LLS 181
Query: 464 SSYDTG------LSALKNE--QESLERQIHSLHKQTASDLDLPVDKA 502
+ G + N+ Q L+R + S H T S P D+A
Sbjct: 182 AQPGKGNEGSNYVLCYPNDADQHWLQRMLTS-HSPTYSYTLHPRDEA 227
>UNIPROTKB|Q8A4A6 [details] [associations]
symbol:BT_2697 "DNA mismatch repair protein mutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0008094 SUPFAM:SSF48334 HSSP:Q56215 GO:GO:0032300
HOGENOM:HOG000022931 OMA:ESYFFAE RefSeq:NP_811609.1
ProteinModelPortal:Q8A4A6 GeneID:1072523 KEGG:bth:BT_2697
PATRIC:21060335 ProtClustDB:CLSK823265
BioCyc:BTHE226186:GJXV-2751-MONOMER Uniprot:Q8A4A6
Length = 604
Score = 141 (54.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 64/236 (27%), Positives = 104/236 (44%)
Query: 593 LSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLI 652
+ +D S A + + P Y P I + E HP + V N +
Sbjct: 367 IGAIDAYCSLATFSYNHPD-YIYPQITSQSF-HLQAEALGHPLMNRNKCVR---NGIDME 421
Query: 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDC-IFARVGAGDC 711
+ + +F IITG NM GKST++R VGVN L+A +G+ P A + + + + D
Sbjct: 422 K-RPFFIIITGANMAGKSTYLRTVGVNYLLACIGA--PVWAAKMEIFPARLVTSLRTSDS 478
Query: 712 QLRGVSTFMQEMLETASILKG--ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769
S F E+ I+ A + II+DE+ +GT++ D ++A+ + + +
Sbjct: 479 LTDNESYFFAELKRLKLIIDKLKAGEELFIILDEILKGTNSMDKQKGSFALIKQFMS-MD 537
Query: 770 APTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPG 825
A + ATH L L +A N + NY A D T+ +LT Y++ G
Sbjct: 538 ANGIIATHDLLLGTLI--DAFPQN------IRNYCFEA--DITNNELTFSYQMRSG 583
Score = 64 (27.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 315 SLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLR 368
SLF +NRT T +GK+ L W L + I R + ++ + RQ R
Sbjct: 131 SLFQYINRTSTP-IGKQRLANWFNAHLEEKEAIEQRQEAIRELSSELEFRQQFR 183
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 158 (60.7 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 92/371 (24%), Positives = 163/371 (43%)
Query: 337 LKQPLLDVNEINARLDIVQAFVDDTALR-QDLRQHLKRISDIERLMHNLE---KRRAGLQ 392
L++ L ++ + + L Q D A+ ++ K+I D + + K R ++
Sbjct: 668 LERLLSKIHNVGSPLKS-QNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVICKIRGIME 726
Query: 393 QIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDL 452
+++ ++S I + + EG+F L E L+ ++ D + K L+
Sbjct: 727 EVIDDFKSKILKQVLTLQTKNPEGRFPDLTVE--LNRWDTAFDHEKARK-TGLITPKAGF 783
Query: 453 DQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFG 512
D S YD L+ ++ ++SL + L KQ + + + G
Sbjct: 784 D----------SDYDQALADIRENEQSL---LEYLEKQRSR---IGCRTIVYWGIGR--- 824
Query: 513 HVFRITKKEEPKIRKKLTTQFIVLETRKDGVK--FTNTKLKKLGDQYQKVLEEYKNCQ-K 569
+ +++ E R L ++ + T+K G K +T T KKL + EE ++ K
Sbjct: 825 NRYQLEIPENFTTRN-LPEEYELKSTKK-GCKRYWTKTIEKKLANLINA--EERRDVSLK 880
Query: 570 ELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPP--DVGDII 627
+ + R+ + +++ ++ LDVLL A+ + P RP I P D +
Sbjct: 881 DCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTPPFL 940
Query: 628 -LEGSRHPCVEAQDWVN-FIPND----CKLIR---GKSWFQIITGPNMGGKSTFIRQVGV 678
L+GSRHPC+ + + FIPND C+ K++ ++TGPNMGGKST +RQV
Sbjct: 941 YLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENDKAYCVLVTGPNMGGKSTLMRQV-- 998
Query: 679 NILMAQVGSFV 689
N+ SFV
Sbjct: 999 NLKFCYTKSFV 1009
Score = 37 (18.1 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 156 GLGYVDLTKRVLGLAEFLDDSHFTNVESALVA 187
G+ +VD + + +F DD H + + LVA
Sbjct: 407 GVCFVDTSLGKFFIGQFSDDRHCSRFRT-LVA 437
>UNIPROTKB|Q23YW9 [details] [associations]
symbol:TTHERM_00857890 "MutS domain II family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:GG662557 RefSeq:XP_001021931.1
ProteinModelPortal:Q23YW9 EnsemblProtists:EAS01686 GeneID:7832209
KEGG:tet:TTHERM_00857890 Uniprot:Q23YW9
Length = 1537
Score = 104 (41.7 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 71/294 (24%), Positives = 121/294 (41%)
Query: 141 IVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAV 200
IVA+ N +G ++ + +++ +D + N S + A E +
Sbjct: 784 IVAIIENHANQ---VGFAAFNVQTGQISISQIVDRLTYLNTTSTIFAFYPLEIIFSNTQS 840
Query: 201 KSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGA 260
S K L+ L T K+ F D + L + S ++ L +A +
Sbjct: 841 SSYLVKILQQQLPL--TKFTSVKRNYF---DETKGESILKKKSSNLIQKL-DNLYVALAS 894
Query: 261 LGALLSYAE------LLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNF 314
L AL+++ E LL ++ G +I+ +DS + +D L +L + N+
Sbjct: 895 LNALINHIEVTQELYLLKEQLQIG--FIQ---MDSILVMDHKTALDLELLIQQLSQNEKG 949
Query: 315 SLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV--DDTALRQDLRQHLK 372
SL L AG KRLL L QPL D+ + R V F D+ L Q L+ L+
Sbjct: 950 SLISLFKIQTVAG--KRLLRSNLLQPLNDLKSLQDRQSAVFEFTMNQDSILSQ-LQLQLQ 1006
Query: 373 RI----SDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
I S I+ L + L ++ L+QI + + ++ L Y+ Q + + LI
Sbjct: 1007 IIDMQNSYIKELKNLLCDQQ--LEQIKESIKQNLDLSYLEKIQNQQQHKSHDLI 1058
Score = 93 (37.8 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 659 QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVST 718
Q+ G GKS I+ + + +MAQVG +VP IS+++ I ++ D S+
Sbjct: 1243 QLFLGQQNCGKSILIKSIAIIQIMAQVGCYVPAKNGVISLKNLILSKFYTTDSIEEKQSS 1302
Query: 719 FMQEMLETASILKGATDR 736
F E+ + I+K +
Sbjct: 1303 FTSELQQLDFIIKSKASK 1320
Score = 49 (22.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF---ATHFHELTAL 784
L + D+++I+IDE + D ++ A E + I P F A+ ++EL +
Sbjct: 1335 LSKSKDKTIILIDEFCSSSQYEDNISISLAFLEEI--SICFPNSFLLCASKYYELVQM 1390
>UNIPROTKB|A2ABE9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007696 InterPro:IPR007861
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:AL844216 EMBL:CR936239 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328 ChiTaRS:MSH5
Ensembl:ENST00000412201 Ensembl:ENST00000425344
Ensembl:ENST00000435942 Ensembl:ENST00000443665
Ensembl:ENST00000450148 Uniprot:A2ABE9
Length = 333
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 47/229 (20%), Positives = 100/229 (43%)
Query: 283 RKYSLDSYMRLDSAAMRALNVLESKTDAN---------KNFSLFGLMNRTCTAGMGKRLL 333
+K+ L + +D L + +S++ + + SLFG++NR C G++LL
Sbjct: 49 KKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNR-CHCKWGEKLL 107
Query: 334 HMWLKQPLLDVNEINARLDIVQAFV--DDTALRQDLRQHLKRISDIERLMHNLEKRRAGL 391
+W +P D+ E+++RLD++Q F+ + + Q L + L I ++ ++ ++ +
Sbjct: 108 RLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKV 167
Query: 392 QQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDD-DHLNKFIALVETSV 450
LY++ +R A + S+ + + D + +DD H+ I V S
Sbjct: 168 SDWQVLYKTVYSALGLRDACRSLP---QSI--QLFRDIAQEFSDDLHHIASLIGKVYLSP 222
Query: 451 DLD---QLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLD 496
+D L + + + D + K L + + ++ +LD
Sbjct: 223 QVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLD 271
>UNIPROTKB|Q7NE77 [details] [associations]
symbol:gll4003 "Gll4003 protein" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
EMBL:BA000045 GenomeReviews:BA000045_GR SUPFAM:SSF48334 HSSP:Q56215
GO:GO:0032300 RefSeq:NP_926949.1 ProteinModelPortal:Q7NE77
GeneID:2602406 KEGG:gvi:gll4003 PATRIC:22047503
HOGENOM:HOG000022931 OMA:ESYFFAE ProtClustDB:CLSK923279
BioCyc:GVIO251221:GH9A-4052-MONOMER Uniprot:Q7NE77
Length = 619
Score = 125 (49.1 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 48/169 (28%), Positives = 83/169 (49%)
Query: 587 KSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSR-HPCV-EAQDWVNF 644
+S L++++ L S A LA P + +++ +I G HP + EA V
Sbjct: 363 RSWLEALAQIEALASLASLAHDQPE-WVFAEVDTRL--QVIAAGQLGHPLIGEA---VR- 415
Query: 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFA 704
+ ND L F ++TG NM GKST +R +G+NI++A G+ V C R+ +
Sbjct: 416 VANDVTL-GPPGTFLLVTGSNMSGKSTLLRSIGLNIVLALAGAPV-CARSLRLPPVTLKT 473
Query: 705 RVGAGDCQLRGVSTFMQEMLETASILKGA--TDRSLI-IIDELGRGTST 750
+ D G+S +M E+ ++ A +R L+ ++DE+ GT++
Sbjct: 474 SMRVQDSLASGLSFYMAELQRLKEVVDAARPAERPLLYLLDEILLGTNS 522
Score = 64 (27.6 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 305 ESKTDANKNFSLFG---LMNRTCTAG--MGKRLLHMWLKQP 340
E T A ++ LFG L TCTA MG+RLL WL +P
Sbjct: 123 EQATFA-RDLDLFGHASLFQLTCTAHTPMGRRLLARWLLEP 162
Score = 41 (19.5 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 397 LYQSSIRLPYI----RS-ALQQYEGQFSSL----IKERYLDPL--ESLTDDDHLNKFIAL 445
+Y +SI + RS +++ Y G F++L ++ L L ESL +D L K L
Sbjct: 262 IYTASIHQTFAAVSNRSGSVRAYAGLFAALSRLECRDETLKSLQAESLNAEDRLRKLDTL 321
Query: 446 VETSVDL 452
V S DL
Sbjct: 322 VGCS-DL 327
>UNIPROTKB|A3KGN1 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AL844216 HGNC:HGNC:7328 ChiTaRS:MSH5 SMR:A3KGN1
Ensembl:ENST00000430241 HOGENOM:HOG000172377 Uniprot:A3KGN1
Length = 135
Score = 111 (44.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTF 672
Y+RP +P +G + ++ RHP +E F+PN + K ++ITGPN GKS +
Sbjct: 2 YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIY 59
Query: 673 IRQVGVNILMAQVGSFVPCD 692
++QV + A S V D
Sbjct: 60 LKQVAKAVNNATAQSLVLID 79
Score = 106 (42.4 bits), Expect = 0.00010, P = 0.00010
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIRAPTL 773
G S +++++ A + AT +SL++IDE G+GT+T DG L A+ H L P +
Sbjct: 55 GKSIYLKQV---AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 111
Query: 774 F-ATHFHELTAL 784
F AT+F L L
Sbjct: 112 FVATNFLSLVQL 123
>UNIPROTKB|A8J0I3 [details] [associations]
symbol:CHLREDRAFT_174349 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR016151 Pfam:PF00488
PROSITE:PS00486 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 EMBL:DS496130
eggNOG:COG0249 GO:GO:0000710 Gene3D:3.40.1170.10 GO:GO:0032300
GO:GO:0000404 RefSeq:XP_001694807.1 ProteinModelPortal:A8J0I3
STRING:A8J0I3 EnsemblPlants:EDP02391 GeneID:5720367
KEGG:cre:CHLREDRAFT_174349 Uniprot:A8J0I3
Length = 317
Score = 127 (49.8 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 717 STFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771
+TF +EM + A +L A RSL++ DELGRGT+T+DG +A A+ L+ AP
Sbjct: 235 ATFFEEMSDAAGLLSAADRRSLVLCDELGRGTATHDGVAVAGAVLSQLLHVNSAP 289
>UNIPROTKB|Q02224 [details] [associations]
symbol:CENPE "Centromere-associated protein E" species:9606
"Homo sapiens" [GO:0005875 "microtubule associated complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0000778 "condensed nuclear
chromosome kinetochore" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0000940 "condensed chromosome outer kinetochore"
evidence=TAS] [GO:0000776 "kinetochore" evidence=IDA] [GO:0045860
"positive regulation of protein kinase activity" evidence=IMP]
[GO:0000779 "condensed chromosome, centromeric region"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0051382 "kinetochore assembly" evidence=NAS] [GO:0003777
"microtubule motor activity" evidence=IMP] [GO:0005874
"microtubule" evidence=IDA] [GO:0043515 "kinetochore binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IMP] [GO:0000775
"chromosome, centromeric region" evidence=IDA] [GO:0007080 "mitotic
metaphase plate congression" evidence=TAS] [GO:0000089 "mitotic
metaphase" evidence=TAS] [GO:0007079 "mitotic chromosome movement
towards spindle pole" evidence=TAS] [GO:0000087 "M phase of mitotic
cell cycle" evidence=TAS] [GO:0000236 "mitotic prometaphase"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0007018 "microtubule-based
movement" evidence=TAS] [GO:0007596 "blood coagulation"
evidence=TAS] [GO:0019886 "antigen processing and presentation of
exogenous peptide antigen via MHC class II" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015630 "microtubule
cytoskeleton" evidence=IDA] Reactome:REACT_604 InterPro:IPR001752
InterPro:IPR019821 Pfam:PF00225 PRINTS:PR00380 PROSITE:PS00411
PROSITE:PS50067 SMART:SM00129 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 Reactome:REACT_6900 GO:GO:0005875
Reactome:REACT_115566 Reactome:REACT_21300 GO:GO:0000776
GO:GO:0051301 GO:GO:0005819 GO:GO:0019886 GO:GO:0007596
eggNOG:COG5059 GO:GO:0045860 EMBL:CH471057 GO:GO:0005874
GO:GO:0003777 GO:GO:0051382 Gene3D:3.40.850.10 GO:GO:0000236
GO:GO:0000779 GO:GO:0000777 GO:GO:0000089 GO:GO:0007080
GO:GO:0007079 EMBL:Z15005 EMBL:AB209996 EMBL:AC079919 EMBL:AK290362
IPI:IPI00296365 IPI:IPI00619925 IPI:IPI00868715 PIR:S28261
RefSeq:NP_001804.2 UniGene:Hs.75573 PDB:1T5C PDBsum:1T5C
ProteinModelPortal:Q02224 SMR:Q02224 IntAct:Q02224
MINT:MINT-5002721 STRING:Q02224 PhosphoSite:Q02224 DMDM:160358869
PaxDb:Q02224 PRIDE:Q02224 Ensembl:ENST00000265148
Ensembl:ENST00000380026 GeneID:1062 KEGG:hsa:1062 UCSC:uc003hxb.1
UCSC:uc003hxc.1 CTD:1062 GeneCards:GC04M104027 H-InvDB:HIX0031416
HGNC:HGNC:1856 HPA:HPA042294 MIM:117143 neXtProt:NX_Q02224
PharmGKB:PA26400 HOGENOM:HOG000111540 HOVERGEN:HBG097734
InParanoid:Q02224 KO:K11498 OMA:VKTWKER BindingDB:Q02224
ChEMBL:CHEMBL5870 EvolutionaryTrace:Q02224 GenomeRNAi:1062
NextBio:4442 ArrayExpress:Q02224 Bgee:Q02224 CleanEx:HS_CENPE
Genevestigator:Q02224 GO:GO:0043515 Uniprot:Q02224
Length = 2701
Score = 101 (40.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 48/226 (21%), Positives = 103/226 (45%)
Query: 363 LRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLI 422
+++++ + K+I++IE L + L+ + L+ + + RL + + YE + S+
Sbjct: 1146 VQEEMSEMQKKINEIENLKNELKNKELTLE-----HMETERLELAQKLNENYE-EVKSIT 1199
Query: 423 KER-YLDPLESL--TDDDHLNKFIALVE-TSVDL-DQLENGEYMISSSYDTGLSALKNEQ 477
KER L L+ T+ DHL +I +E T + ++L+ + +T + L+
Sbjct: 1200 KERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQET-IDELRRSV 1258
Query: 478 ESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE 537
QI + S L + + ++ +V +++ +E +L T+
Sbjct: 1259 SEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTE---QS 1315
Query: 538 TRKDGVKFTNTKLKKL--GDQYQKVLEEYKNCQKELVN-RVIQTAV 580
T KD ++++L +++Q+ EE K+ KE N + I+ A+
Sbjct: 1316 TTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEAL 1361
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 40/177 (22%), Positives = 76/177 (42%)
Query: 765 VEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEP 824
+E +R F E+ +L E N K+ + V + + HI T L K++
Sbjct: 1328 MERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRET------LAKIQE 1381
Query: 825 GACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTP--SAVISDDAKIEVGSKRKRISD 882
Q +++ E N +V+ E+E F P SA++ +IE+ KR+ +
Sbjct: 1382 SQSKQEQSLNMKEKDNETTKIVS-------EMEQFKPKDSALLR--IEIEMLGLSKRLQE 1432
Query: 883 PNDMSRGAARAHQFLKEFSD-MPLETMDLKEALERV--KRMKDDLEKDAGDCCWLQQ 936
+D + A+ L+ + + E+ LKE ++ + K ++ + E CC +Q
Sbjct: 1433 SHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQ 1489
>UNIPROTKB|A9WD21 [details] [associations]
symbol:Caur_0339 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633979.1 ProteinModelPortal:A9WD21
GeneID:5827952 KEGG:cau:Caur_0339 PATRIC:21411210
HOGENOM:HOG000020534 OMA:THFEREE ProtClustDB:CLSK865138
BioCyc:CAUR324602:GIXU-342-MONOMER Uniprot:A9WD21
Length = 508
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 90/416 (21%), Positives = 165/416 (39%)
Query: 396 KLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFI---ALV--ETS- 449
+++Q + P + + Q EG + RYL +E L DH ++ ALV +T
Sbjct: 64 EVFQDLEKAPILEAIKQFAEGM---RVVRRYLAMMEQLNFADHRKGWLLEAALVYCDTVT 120
Query: 450 ------VDLDQLENG-----EYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLP 498
VDL NG E++ + +L + + ++ + ++ +
Sbjct: 121 TLARHLVDLPLRSNGLSTFREHLTTCIQSPAFRSLATDSQHVKNALAAIKYSVIIESGKF 180
Query: 499 VDKALK--LDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTK-LKKLGD 555
K + +D ++ HVF K +++ ++V + G+ K L+ +
Sbjct: 181 SVKRYEGEVDYSSEVEHVFS-------KFKQRDAQDYLVHLPERAGMSHIEAKILEFVAR 233
Query: 556 QYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTR 615
Y + EE E + +T TF + + ++ L+ + ADL P+
Sbjct: 234 LYPEPFEELDRFCTEHNQFLDETIRTFD---REIQFYVAYLEYI---ADLKRQ-GLPFCY 286
Query: 616 PDINPPDVGDIILEGSRHPCVEA--QDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFI 673
P ++ + +G A + ND + G ++TGPN GGK+TF
Sbjct: 287 PHVSATSKAVYVRDGFDLALAHAWRYEQKTITLNDF-FLTGPERILVVTGPNQGGKTTFA 345
Query: 674 RQVGVNILMAQVGSFVPCDRASISVRDCIFARVGA-GDCQ-LRGVSTFMQEMLETASILK 731
R G +A +G VP A + + D IF D Q LRG +++ L
Sbjct: 346 RMFGQLHYLASLGCPVPGREAGLFLADRIFTHFERIEDSQNLRG--KLEDDLVRMHRALI 403
Query: 732 GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787
AT S+ I++E+ T+ D L+ I L + + ++ T EL +L+ +
Sbjct: 404 QATPDSIFILNEIFSSTTVQDALFLSKEIMARLTD-LDVLGVWVTFLDELASLSEK 458
>UNIPROTKB|A8HYR5 [details] [associations]
symbol:MSH1 "DNA mismatch repair MutS protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR016151 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0008094
EMBL:DS496110 GO:GO:0000710 Gene3D:3.40.1170.10 GO:GO:0032300
GO:GO:0000404 eggNOG:NOG330919 RefSeq:XP_001696421.1
ProteinModelPortal:A8HYR5 EnsemblPlants:EDP08398 GeneID:5722205
KEGG:cre:CHLREDRAFT_142479 Uniprot:A8HYR5
Length = 1041
Score = 129 (50.5 bits), Expect = 0.00031, P = 0.00031
Identities = 36/87 (41%), Positives = 49/87 (56%)
Query: 700 DCIFAR-VGAGDCQLRGVSTF-MQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLA 757
D ++ R VGAG +L G + QE + TA L+ SL+++DELG+GT G LA
Sbjct: 562 DAVWVRLVGAGGKRLTGAAERNAQEQVRTAGGLE-LRSSSLVLLDELGKGTEVVAGSALA 620
Query: 758 WAICEHLVEEIRAPTLFATHFHELTAL 784
A+ E LV A +FATH H+L L
Sbjct: 621 AAVVEDLVAA-GAAGVFATHLHDLVYL 646
>UNIPROTKB|H0YDS7 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 EMBL:CR759915 EMBL:CR925765 HGNC:HGNC:7328
ChiTaRS:MSH5 Ensembl:ENST00000469938 Ensembl:ENST00000471854
Ensembl:ENST00000484309 Ensembl:ENST00000486024
Ensembl:ENST00000497253 Uniprot:H0YDS7
Length = 166
Score = 111 (44.1 bits), Expect = 0.00045, P = 0.00045
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTF 672
Y+RP +P +G + ++ RHP +E F+PN + K ++ITGPN GKS +
Sbjct: 2 YSRPRYSPQVLG-VRIQNGRHPLMELCART-FVPNSTECGGDKGRVKVITGPNSSGKSIY 59
Query: 673 IRQVGVNILMAQVGSFVPCD 692
++QV + A S V D
Sbjct: 60 LKQVAKAVNNATAQSLVLID 79
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 938 938 0.00092 122 3 11 22 0.39 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 185
No. of states in DFA: 621 (66 KB)
Total size of DFA: 427 KB (2206 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 87.88u 0.14s 88.02t Elapsed: 00:00:03
Total cpu time: 87.95u 0.14s 88.09t Elapsed: 00:00:04
Start: Sat May 11 13:15:19 2013 End: Sat May 11 13:15:23 2013
WARNINGS ISSUED: 1