Query 002306
Match_columns 938
No_of_seqs 581 out of 4055
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 21:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0249 MutS Mismatch repair A 100.0 2E-158 3E-163 1422.2 75.7 831 15-922 3-843 (843)
2 TIGR01070 mutS1 DNA mismatch r 100.0 3E-155 6E-160 1412.4 84.0 827 18-922 1-840 (840)
3 PRK05399 DNA mismatch repair p 100.0 9E-154 2E-158 1408.3 88.4 837 14-925 4-853 (854)
4 KOG0219 Mismatch repair ATPase 100.0 7E-126 2E-130 1070.6 57.3 829 8-860 6-838 (902)
5 KOG0217 Mismatch repair ATPase 100.0 2E-121 4E-126 1054.2 46.0 811 14-860 244-1093(1125)
6 KOG0218 Mismatch repair MSH3 [ 100.0 1E-119 2E-124 998.5 51.4 808 14-860 158-1031(1070)
7 KOG0220 Mismatch repair ATPase 100.0 8.4E-82 1.8E-86 701.5 47.2 737 136-927 101-864 (867)
8 KOG0221 Mismatch repair ATPase 100.0 1.7E-80 3.8E-85 678.4 40.7 585 254-860 193-797 (849)
9 PRK00409 recombination and DNA 100.0 9.6E-69 2.1E-73 650.2 50.6 507 294-855 2-513 (782)
10 TIGR01069 mutS2 MutS2 family p 100.0 2E-63 4.3E-68 602.0 51.5 503 294-857 2-510 (771)
11 PF00488 MutS_V: MutS domain V 100.0 6.5E-52 1.4E-56 437.7 15.2 233 613-858 1-234 (235)
12 cd03286 ABC_MSH6_euk MutS6 hom 100.0 5.1E-47 1.1E-51 394.7 17.2 213 628-849 2-218 (218)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 6.7E-46 1.4E-50 389.6 20.1 221 628-857 2-222 (222)
14 cd03287 ABC_MSH3_euk MutS3 hom 100.0 1.1E-45 2.3E-50 385.8 17.4 216 626-849 1-222 (222)
15 smart00533 MUTSd DNA-binding d 100.0 2.1E-41 4.5E-46 376.5 31.0 306 313-638 1-307 (308)
16 cd03284 ABC_MutS1 MutS1 homolo 100.0 1.3E-42 2.8E-47 363.5 18.7 214 628-853 2-216 (216)
17 COG1193 Mismatch repair ATPase 100.0 2.4E-41 5.2E-46 401.4 30.1 480 319-853 16-499 (753)
18 cd03282 ABC_MSH4_euk MutS4 hom 100.0 2.2E-40 4.8E-45 342.7 17.9 201 628-840 2-203 (204)
19 cd03281 ABC_MSH5_euk MutS5 hom 100.0 2E-40 4.4E-45 346.2 17.7 204 628-841 2-213 (213)
20 smart00534 MUTSac ATPase domai 100.0 1E-38 2.3E-43 327.1 16.3 184 658-852 1-184 (185)
21 cd03283 ABC_MutS-like MutS-lik 100.0 3.5E-37 7.5E-42 318.4 17.3 196 628-841 2-199 (199)
22 cd03280 ABC_MutS2 MutS2 homolo 100.0 1.8E-36 3.9E-41 314.8 16.8 197 628-841 2-200 (200)
23 cd03243 ABC_MutS_homologs The 100.0 7.5E-36 1.6E-40 310.7 16.3 200 628-841 2-202 (202)
24 PF01624 MutS_I: MutS domain I 99.9 1.5E-28 3.3E-33 230.3 7.8 102 19-124 1-111 (113)
25 PF05192 MutS_III: MutS domain 99.9 2.8E-26 6.1E-31 239.2 23.6 202 295-604 1-204 (204)
26 cd03227 ABC_Class2 ABC-type Cl 99.9 3.7E-21 8.1E-26 193.0 13.9 136 628-787 2-149 (162)
27 COG1120 FepC ABC-type cobalami 99.8 8.1E-21 1.8E-25 199.5 12.9 157 642-808 14-220 (258)
28 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 1.1E-20 2.4E-25 197.4 12.7 141 645-787 19-208 (254)
29 COG1126 GlnQ ABC-type polar am 99.8 2.1E-19 4.5E-24 179.7 14.5 144 641-787 13-205 (240)
30 COG1136 SalX ABC-type antimicr 99.8 9.4E-20 2E-24 187.9 12.0 142 644-787 19-211 (226)
31 COG1131 CcmA ABC-type multidru 99.8 1.5E-19 3.4E-24 198.0 13.6 156 643-809 18-219 (293)
32 COG1127 Ttg2A ABC-type transpo 99.8 3.3E-19 7.1E-24 181.0 13.7 157 641-808 19-227 (263)
33 COG4555 NatA ABC-type Na+ tran 99.8 3E-19 6.5E-24 175.9 11.3 151 646-807 18-213 (245)
34 COG1116 TauB ABC-type nitrate/ 99.8 2.2E-19 4.8E-24 185.0 10.7 144 643-787 16-200 (248)
35 COG4152 ABC-type uncharacteriz 99.8 4.5E-19 9.7E-24 179.4 12.4 145 641-787 13-199 (300)
36 COG3638 ABC-type phosphate/pho 99.8 2.5E-18 5.4E-23 174.2 11.7 158 642-809 16-230 (258)
37 cd03214 ABC_Iron-Siderophores_ 99.8 2.5E-18 5.4E-23 175.8 12.0 142 644-787 13-167 (180)
38 cd03238 ABC_UvrA The excision 99.8 2.4E-18 5.2E-23 173.9 10.4 141 644-787 9-157 (176)
39 COG1137 YhbG ABC-type (unclass 99.8 1.5E-18 3.2E-23 170.8 8.4 159 641-810 15-222 (243)
40 PRK13537 nodulation ABC transp 99.8 5.3E-18 1.2E-22 187.6 13.8 154 643-808 20-219 (306)
41 PRK13536 nodulation factor exp 99.8 5E-18 1.1E-22 189.8 13.4 156 643-809 54-254 (340)
42 TIGR01188 drrA daunorubicin re 99.7 5.5E-18 1.2E-22 187.5 12.8 153 644-808 7-205 (302)
43 cd03293 ABC_NrtD_SsuB_transpor 99.7 1.1E-17 2.3E-22 176.9 13.9 143 644-787 18-201 (220)
44 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 4.8E-18 1E-22 179.2 11.1 143 644-787 18-209 (218)
45 cd03226 ABC_cobalt_CbiO_domain 99.7 7.7E-18 1.7E-22 175.9 12.2 142 644-787 14-195 (205)
46 cd03259 ABC_Carb_Solutes_like 99.7 8E-18 1.7E-22 176.9 12.2 143 644-787 14-200 (213)
47 cd03265 ABC_DrrA DrrA is the A 99.7 1.1E-17 2.4E-22 176.8 12.7 153 644-806 14-211 (220)
48 TIGR00960 3a0501s02 Type II (G 99.7 7.7E-18 1.7E-22 177.4 11.3 142 644-787 17-207 (216)
49 COG1125 OpuBA ABC-type proline 99.7 1.2E-17 2.7E-22 170.2 12.0 145 642-787 13-205 (309)
50 cd03301 ABC_MalK_N The N-termi 99.7 1.2E-17 2.7E-22 175.4 12.0 143 644-787 14-200 (213)
51 cd03268 ABC_BcrA_bacitracin_re 99.7 1.7E-17 3.7E-22 173.7 13.0 142 644-787 14-195 (208)
52 PRK11247 ssuB aliphatic sulfon 99.7 1.9E-17 4.2E-22 178.5 13.1 143 644-787 26-203 (257)
53 PRK10584 putative ABC transpor 99.7 1.9E-17 4.2E-22 175.9 12.8 143 644-787 24-215 (228)
54 TIGR02211 LolD_lipo_ex lipopro 99.7 1.4E-17 3.1E-22 176.0 11.6 143 644-787 19-210 (221)
55 TIGR01288 nodI ATP-binding ABC 99.7 1.8E-17 3.9E-22 183.5 12.9 155 643-808 17-216 (303)
56 cd03261 ABC_Org_Solvent_Resist 99.7 2E-17 4.4E-22 176.6 12.9 143 644-787 14-206 (235)
57 cd03269 ABC_putative_ATPase Th 99.7 1.8E-17 3.8E-22 173.9 12.2 142 644-787 14-197 (210)
58 TIGR02314 ABC_MetN D-methionin 99.7 1.7E-17 3.7E-22 185.2 12.8 154 644-807 19-221 (343)
59 TIGR02315 ABC_phnC phosphonate 99.7 2.2E-17 4.7E-22 177.3 13.1 143 644-787 16-215 (243)
60 cd03256 ABC_PhnC_transporter A 99.7 2.8E-17 6.1E-22 176.2 13.6 143 644-787 15-214 (241)
61 cd03225 ABC_cobalt_CbiO_domain 99.7 2.5E-17 5.4E-22 172.9 12.8 142 644-787 15-203 (211)
62 cd03267 ABC_NatA_like Similar 99.7 1.6E-17 3.4E-22 177.4 11.3 157 630-787 21-223 (236)
63 COG2884 FtsE Predicted ATPase 99.7 3.5E-17 7.6E-22 160.1 12.6 141 643-786 15-204 (223)
64 PRK11629 lolD lipoprotein tran 99.7 2.5E-17 5.4E-22 175.6 12.5 143 644-787 23-214 (233)
65 cd03219 ABC_Mj1267_LivG_branch 99.7 2.7E-17 5.9E-22 175.7 12.8 142 644-787 14-212 (236)
66 TIGR02673 FtsE cell division A 99.7 2E-17 4.3E-22 174.0 11.6 142 644-787 16-206 (214)
67 cd03258 ABC_MetN_methionine_tr 99.7 4.5E-17 9.7E-22 173.7 14.3 153 644-806 19-220 (233)
68 PRK13637 cbiO cobalt transport 99.7 2.7E-17 5.8E-22 180.6 12.8 143 644-787 21-214 (287)
69 cd03218 ABC_YhbG The ABC trans 99.7 3.4E-17 7.4E-22 174.5 13.2 142 644-787 14-202 (232)
70 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 2.5E-17 5.4E-22 176.0 12.1 143 644-787 15-201 (236)
71 PRK11650 ugpC glycerol-3-phosp 99.7 2.5E-17 5.4E-22 185.4 12.5 154 644-807 18-215 (356)
72 cd03296 ABC_CysA_sulfate_impor 99.7 3.1E-17 6.8E-22 175.5 12.6 143 644-787 16-206 (239)
73 cd03292 ABC_FtsE_transporter F 99.7 2.4E-17 5.2E-22 173.4 11.4 142 644-787 15-205 (214)
74 cd03216 ABC_Carb_Monos_I This 99.7 3.3E-17 7.2E-22 164.6 11.8 134 644-787 14-151 (163)
75 cd03262 ABC_HisP_GlnQ_permease 99.7 3E-17 6.5E-22 172.5 12.1 142 644-787 14-204 (213)
76 TIGR01166 cbiO cobalt transpor 99.7 2.2E-17 4.8E-22 170.3 10.8 137 643-781 5-189 (190)
77 PRK09536 btuD corrinoid ABC tr 99.7 4.7E-17 1E-21 184.9 14.3 154 644-808 17-220 (402)
78 PRK11264 putative amino-acid A 99.7 4.7E-17 1E-21 175.4 13.6 142 644-787 17-213 (250)
79 cd03235 ABC_Metallic_Cations A 99.7 3.3E-17 7.1E-22 172.3 12.0 142 644-787 13-201 (213)
80 TIGR03522 GldA_ABC_ATP gliding 99.7 3.1E-17 6.8E-22 181.3 12.2 154 643-808 15-213 (301)
81 PRK11300 livG leucine/isoleuci 99.7 5.6E-17 1.2E-21 175.4 14.0 143 644-787 19-223 (255)
82 cd03266 ABC_NatA_sodium_export 99.7 6.2E-17 1.4E-21 170.8 14.0 142 644-787 19-205 (218)
83 COG1118 CysA ABC-type sulfate/ 99.7 3.5E-17 7.6E-22 171.5 11.7 152 645-807 17-218 (345)
84 COG1119 ModF ABC-type molybden 99.7 5.8E-17 1.3E-21 165.8 12.9 140 641-781 42-235 (257)
85 PRK13647 cbiO cobalt transport 99.7 4E-17 8.6E-22 178.1 12.4 152 644-806 19-217 (274)
86 PRK13635 cbiO cobalt transport 99.7 4.1E-17 8.8E-22 178.4 12.4 143 644-787 21-209 (279)
87 PRK11248 tauB taurine transpor 99.7 4.6E-17 1E-21 175.7 12.7 143 644-787 15-198 (255)
88 cd03298 ABC_ThiQ_thiamine_tran 99.7 3.9E-17 8.5E-22 171.4 11.8 139 648-787 16-198 (211)
89 cd03294 ABC_Pro_Gly_Bertaine T 99.7 4.5E-17 9.8E-22 177.3 12.6 143 644-787 38-230 (269)
90 COG3842 PotA ABC-type spermidi 99.7 2.8E-17 6E-22 180.5 10.9 156 641-806 16-216 (352)
91 COG1117 PstB ABC-type phosphat 99.7 7.5E-17 1.6E-21 160.7 12.9 142 643-787 20-217 (253)
92 PRK13644 cbiO cobalt transport 99.7 5.3E-17 1.1E-21 177.2 12.9 142 644-787 16-204 (274)
93 TIGR03608 L_ocin_972_ABC putat 99.7 5.4E-17 1.2E-21 169.7 12.4 142 644-787 12-202 (206)
94 COG1135 AbcC ABC-type metal io 99.7 4.1E-17 8.8E-22 171.5 11.3 152 645-806 21-221 (339)
95 PRK11153 metN DL-methionine tr 99.7 4.6E-17 9.9E-22 182.9 12.6 154 644-807 19-221 (343)
96 TIGR03740 galliderm_ABC gallid 99.7 6.5E-17 1.4E-21 171.2 12.9 142 644-787 14-193 (223)
97 PRK13638 cbiO cobalt transport 99.7 7.8E-17 1.7E-21 175.7 13.6 143 643-787 14-205 (271)
98 TIGR01184 ntrCD nitrate transp 99.7 5.2E-17 1.1E-21 172.7 11.9 140 647-787 2-184 (230)
99 TIGR01186 proV glycine betaine 99.7 4.4E-17 9.5E-22 182.9 11.8 154 643-806 6-209 (363)
100 TIGR03265 PhnT2 putative 2-ami 99.7 5.2E-17 1.1E-21 182.6 12.4 154 644-807 18-215 (353)
101 TIGR03410 urea_trans_UrtE urea 99.7 7.1E-17 1.5E-21 171.8 12.8 143 644-787 14-201 (230)
102 PRK13633 cobalt transporter AT 99.7 6.2E-17 1.3E-21 177.3 12.6 143 644-787 24-213 (280)
103 cd03263 ABC_subfamily_A The AB 99.7 6.1E-17 1.3E-21 171.1 12.1 141 644-787 16-201 (220)
104 cd03224 ABC_TM1139_LivF_branch 99.7 1E-16 2.2E-21 169.6 13.7 142 644-787 14-201 (222)
105 COG0411 LivG ABC-type branched 99.7 3.3E-17 7.1E-22 167.6 9.4 146 641-787 15-219 (250)
106 cd03246 ABCC_Protease_Secretio 99.7 4.8E-17 1E-21 165.1 10.5 134 644-787 16-164 (173)
107 PRK10895 lipopolysaccharide AB 99.7 7.1E-17 1.5E-21 173.1 12.4 142 644-787 17-206 (241)
108 COG3839 MalK ABC-type sugar tr 99.7 3E-17 6.6E-22 179.2 9.6 142 645-787 18-203 (338)
109 PRK11000 maltose/maltodextrin 99.7 6.3E-17 1.4E-21 183.3 12.5 143 644-787 17-203 (369)
110 PRK13640 cbiO cobalt transport 99.7 5.9E-17 1.3E-21 177.5 11.8 143 644-787 21-212 (282)
111 PRK09493 glnQ glutamine ABC tr 99.7 9.5E-17 2E-21 172.0 13.1 142 644-787 15-205 (240)
112 PRK10908 cell division protein 99.7 7.9E-17 1.7E-21 170.5 12.3 142 644-787 16-206 (222)
113 TIGR03258 PhnT 2-aminoethylpho 99.7 7.3E-17 1.6E-21 181.7 12.6 154 644-807 19-219 (362)
114 PRK11831 putative ABC transpor 99.7 8E-17 1.7E-21 175.4 12.5 144 643-787 20-213 (269)
115 cd03230 ABC_DR_subfamily_A Thi 99.7 5.7E-17 1.2E-21 164.6 10.5 129 644-787 14-164 (173)
116 COG1122 CbiO ABC-type cobalt t 99.7 2.9E-17 6.4E-22 172.8 8.6 142 644-787 18-208 (235)
117 PRK13651 cobalt transporter AT 99.7 8.9E-17 1.9E-21 177.5 12.8 142 644-787 21-234 (305)
118 PRK10253 iron-enterobactin tra 99.7 1.4E-16 2.9E-21 173.3 14.1 144 643-787 20-213 (265)
119 PRK09544 znuC high-affinity zi 99.7 7.1E-17 1.5E-21 173.7 11.8 143 644-787 18-190 (251)
120 PRK13650 cbiO cobalt transport 99.7 7.6E-17 1.6E-21 176.4 12.2 143 644-787 21-209 (279)
121 cd03264 ABC_drug_resistance_li 99.7 8E-17 1.7E-21 169.1 11.8 140 644-787 14-198 (211)
122 PRK13641 cbiO cobalt transport 99.7 1E-16 2.2E-21 176.1 13.2 142 644-787 21-214 (287)
123 PRK10247 putative ABC transpor 99.7 1.2E-16 2.6E-21 169.4 13.2 144 643-787 20-206 (225)
124 PRK09984 phosphonate/organopho 99.7 1.2E-16 2.7E-21 173.4 13.5 143 644-787 18-222 (262)
125 COG3840 ThiQ ABC-type thiamine 99.7 1.4E-16 3E-21 154.6 12.1 151 648-808 17-211 (231)
126 TIGR02770 nickel_nikD nickel i 99.7 9.9E-17 2.1E-21 170.7 12.3 141 646-787 2-195 (230)
127 PRK11614 livF leucine/isoleuci 99.7 7.9E-17 1.7E-21 172.2 11.6 143 643-787 18-206 (237)
128 PRK09452 potA putrescine/sperm 99.7 8.3E-17 1.8E-21 181.9 12.3 154 644-807 28-225 (375)
129 PRK11432 fbpC ferric transport 99.7 1.1E-16 2.3E-21 179.8 13.1 155 643-807 19-217 (351)
130 cd03295 ABC_OpuCA_Osmoprotecti 99.7 1.9E-16 4.2E-21 169.8 14.5 143 644-787 15-205 (242)
131 PRK14250 phosphate ABC transpo 99.7 1.2E-16 2.5E-21 171.3 12.8 143 644-787 17-201 (241)
132 PRK13632 cbiO cobalt transport 99.7 9.5E-17 2.1E-21 175.0 12.2 144 643-787 22-211 (271)
133 cd03257 ABC_NikE_OppD_transpor 99.7 1.3E-16 2.9E-21 169.5 13.0 143 644-787 19-215 (228)
134 TIGR01978 sufC FeS assembly AT 99.7 1.4E-16 3E-21 171.0 13.2 152 644-806 14-224 (243)
135 cd03260 ABC_PstB_phosphate_tra 99.7 1.7E-16 3.8E-21 168.5 13.8 151 644-806 14-219 (227)
136 PRK13652 cbiO cobalt transport 99.7 1.2E-16 2.6E-21 174.8 12.8 142 644-787 18-207 (277)
137 PRK13646 cbiO cobalt transport 99.7 1.2E-16 2.6E-21 175.5 12.9 143 644-787 21-215 (286)
138 PRK10851 sulfate/thiosulfate t 99.7 1.1E-16 2.4E-21 179.9 12.9 154 644-807 16-217 (353)
139 PRK13538 cytochrome c biogenes 99.7 7.8E-17 1.7E-21 168.2 10.8 139 644-785 15-195 (204)
140 COG1124 DppF ABC-type dipeptid 99.7 1.2E-16 2.6E-21 163.4 11.7 154 644-807 21-222 (252)
141 TIGR03005 ectoine_ehuA ectoine 99.7 1.3E-16 2.9E-21 172.1 12.9 143 644-787 14-216 (252)
142 COG4619 ABC-type uncharacteriz 99.7 1.8E-16 3.8E-21 151.7 11.9 155 642-806 15-213 (223)
143 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 1.2E-16 2.5E-21 169.3 12.0 143 643-787 35-211 (224)
144 cd03297 ABC_ModC_molybdenum_tr 99.7 1.7E-16 3.6E-21 167.0 13.1 138 648-787 16-201 (214)
145 TIGR01277 thiQ thiamine ABC tr 99.7 1.1E-16 2.4E-21 168.2 11.8 140 647-787 15-198 (213)
146 PRK13636 cbiO cobalt transport 99.7 1.5E-16 3.2E-21 174.5 13.2 143 644-787 20-211 (283)
147 TIGR03411 urea_trans_UrtD urea 99.7 1.8E-16 3.9E-21 170.0 13.6 141 644-787 16-211 (242)
148 cd03245 ABCC_bacteriocin_expor 99.7 1.3E-16 2.7E-21 168.7 12.0 141 644-787 18-207 (220)
149 PRK13634 cbiO cobalt transport 99.7 1.2E-16 2.5E-21 175.8 12.1 153 644-806 21-225 (290)
150 PRK13548 hmuV hemin importer A 99.7 1.7E-16 3.8E-21 171.7 13.2 144 643-787 15-210 (258)
151 TIGR02982 heterocyst_DevA ABC 99.7 1.5E-16 3.2E-21 168.1 12.4 143 644-787 19-210 (220)
152 PRK13648 cbiO cobalt transport 99.7 1.2E-16 2.7E-21 173.9 12.0 143 644-787 23-211 (269)
153 PRK11124 artP arginine transpo 99.7 2.1E-16 4.5E-21 169.6 13.4 142 644-787 16-210 (242)
154 PRK13643 cbiO cobalt transport 99.7 1.5E-16 3.2E-21 174.8 12.1 142 644-787 20-213 (288)
155 TIGR02769 nickel_nikE nickel i 99.7 2E-16 4.2E-21 172.0 12.8 144 643-787 24-220 (265)
156 PRK10575 iron-hydroxamate tran 99.7 2.4E-16 5.2E-21 171.3 13.5 143 644-787 25-217 (265)
157 cd03232 ABC_PDR_domain2 The pl 99.7 5E-17 1.1E-21 167.9 7.7 135 644-787 21-178 (192)
158 TIGR00968 3a0106s01 sulfate AB 99.7 2E-16 4.2E-21 169.1 12.5 153 644-806 14-210 (237)
159 cd03217 ABC_FeS_Assembly ABC-t 99.7 1.2E-16 2.6E-21 166.2 10.5 135 644-787 14-174 (200)
160 cd03213 ABCG_EPDR ABCG transpo 99.7 2E-16 4.3E-21 163.7 12.0 135 643-787 22-181 (194)
161 TIGR03415 ABC_choXWV_ATP choli 99.7 1.6E-16 3.4E-21 179.3 12.0 155 643-807 37-245 (382)
162 PRK10418 nikD nickel transport 99.7 2.2E-16 4.7E-21 170.6 12.7 143 644-787 17-210 (254)
163 PRK11701 phnK phosphonate C-P 99.7 2.1E-16 4.6E-21 171.1 12.6 153 644-806 20-231 (258)
164 PRK10619 histidine/lysine/argi 99.7 2.1E-16 4.5E-21 171.1 12.5 142 644-787 19-221 (257)
165 PRK10070 glycine betaine trans 99.7 1.5E-16 3.3E-21 180.6 11.9 152 644-806 42-244 (400)
166 TIGR00972 3a0107s01c2 phosphat 99.7 3.3E-16 7.1E-21 168.5 13.9 141 644-787 15-212 (247)
167 cd03247 ABCC_cytochrome_bd The 99.7 1.4E-16 3E-21 162.6 10.4 129 644-787 16-165 (178)
168 PRK03695 vitamin B12-transport 99.7 2.5E-16 5.4E-21 169.4 12.8 141 645-787 11-202 (248)
169 cd03231 ABC_CcmA_heme_exporter 99.7 2.3E-16 5E-21 164.2 12.1 142 644-787 14-194 (201)
170 PRK15112 antimicrobial peptide 99.7 2E-16 4.4E-21 172.0 12.1 143 644-787 27-219 (267)
171 TIGR03873 F420-0_ABC_ATP propo 99.7 2.5E-16 5.5E-21 170.3 12.8 142 644-787 15-206 (256)
172 PRK13539 cytochrome c biogenes 99.7 2E-16 4.2E-21 165.5 11.5 139 644-784 16-192 (207)
173 PRK13649 cbiO cobalt transport 99.7 2.7E-16 5.8E-21 172.4 13.0 142 644-787 21-214 (280)
174 PRK11607 potG putrescine trans 99.7 2.2E-16 4.7E-21 178.8 12.5 155 643-807 32-230 (377)
175 PRK11231 fecE iron-dicitrate t 99.7 3.9E-16 8.5E-21 168.7 13.8 142 644-787 16-207 (255)
176 PRK13639 cbiO cobalt transport 99.7 2.5E-16 5.5E-21 172.0 12.4 142 644-787 16-206 (275)
177 cd03215 ABC_Carb_Monos_II This 99.7 2.3E-16 4.9E-21 161.6 11.2 135 645-787 15-173 (182)
178 COG4586 ABC-type uncharacteriz 99.7 6.4E-16 1.4E-20 159.2 14.4 153 646-808 40-238 (325)
179 PRK14268 phosphate ABC transpo 99.7 3.3E-16 7.1E-21 169.6 13.0 142 643-787 25-222 (258)
180 TIGR02323 CP_lyasePhnK phospho 99.7 3E-16 6.5E-21 169.5 12.7 143 644-787 17-218 (253)
181 cd03229 ABC_Class3 This class 99.7 1.3E-16 2.9E-21 162.7 9.4 139 644-787 14-170 (178)
182 PRK13545 tagH teichoic acids e 99.7 2.7E-16 5.8E-21 180.5 12.7 152 644-806 38-222 (549)
183 cd03228 ABCC_MRP_Like The MRP 99.7 1.4E-16 3E-21 161.5 9.2 133 644-787 16-163 (171)
184 PRK10771 thiQ thiamine transpo 99.7 3E-16 6.6E-21 167.2 12.3 139 648-787 17-199 (232)
185 PRK11022 dppD dipeptide transp 99.7 2.7E-16 5.7E-21 175.4 12.2 153 644-806 21-233 (326)
186 cd03300 ABC_PotA_N PotA is an 99.7 3.8E-16 8.2E-21 166.4 12.7 143 644-787 14-200 (232)
187 PRK15056 manganese/iron transp 99.7 2.6E-16 5.7E-21 171.6 11.7 142 644-787 21-211 (272)
188 TIGR02142 modC_ABC molybdenum 99.7 2.9E-16 6.3E-21 177.3 12.3 149 648-806 15-211 (354)
189 PRK15093 antimicrobial peptide 99.7 3.7E-16 8E-21 174.8 12.9 152 644-805 21-237 (330)
190 cd03252 ABCC_Hemolysin The ABC 99.7 3.1E-16 6.6E-21 167.7 11.7 141 644-787 16-205 (237)
191 COG0410 LivF ABC-type branched 99.7 5.6E-16 1.2E-20 157.4 12.8 156 643-808 16-218 (237)
192 cd03223 ABCD_peroxisomal_ALDP 99.7 1.1E-16 2.3E-21 161.4 7.5 131 644-787 15-156 (166)
193 PRK13543 cytochrome c biogenes 99.7 3.8E-16 8.2E-21 164.2 12.1 143 643-787 24-206 (214)
194 cd03244 ABCC_MRP_domain2 Domai 99.7 4E-16 8.6E-21 165.0 12.2 141 644-787 18-206 (221)
195 PRK13642 cbiO cobalt transport 99.7 3.4E-16 7.4E-21 171.1 12.1 143 644-787 21-209 (277)
196 PRK13645 cbiO cobalt transport 99.7 2.9E-16 6.3E-21 172.8 11.6 143 644-787 25-220 (289)
197 PRK13631 cbiO cobalt transport 99.7 6.4E-16 1.4E-20 171.7 14.4 152 644-806 40-255 (320)
198 TIGR01189 ccmA heme ABC export 99.7 2.5E-16 5.4E-21 163.6 10.3 134 644-780 14-188 (198)
199 PRK13547 hmuV hemin importer A 99.7 4E-16 8.8E-21 169.7 12.4 143 644-787 15-224 (272)
200 PRK11144 modC molybdate transp 99.7 3.4E-16 7.3E-21 176.5 12.0 139 648-787 16-198 (352)
201 cd03237 ABC_RNaseL_inhibitor_d 99.7 3.8E-16 8.2E-21 167.4 11.7 137 650-787 19-185 (246)
202 PRK13540 cytochrome c biogenes 99.7 5.9E-16 1.3E-20 161.1 12.8 141 644-787 15-195 (200)
203 PRK14242 phosphate transporter 99.7 5.6E-16 1.2E-20 167.4 13.1 141 644-787 20-217 (253)
204 PRK10419 nikE nickel transport 99.7 5.2E-16 1.1E-20 168.9 12.9 144 643-787 25-221 (268)
205 cd03222 ABC_RNaseL_inhibitor T 99.7 3.5E-16 7.5E-21 158.4 10.6 120 651-787 20-141 (177)
206 cd03234 ABCG_White The White s 99.7 4.7E-16 1E-20 165.0 12.2 143 643-787 20-213 (226)
207 PRK10938 putative molybdenum t 99.7 5.5E-16 1.2E-20 183.5 13.8 152 644-806 17-214 (490)
208 PRK14275 phosphate ABC transpo 99.7 7.7E-16 1.7E-20 169.0 14.0 142 643-787 52-250 (286)
209 PRK15439 autoinducer 2 ABC tra 99.7 4.3E-16 9.4E-21 184.9 12.9 154 643-807 24-220 (510)
210 cd03250 ABCC_MRP_domain1 Domai 99.7 3.7E-16 7.9E-21 163.1 10.8 142 644-787 19-196 (204)
211 PRK14245 phosphate ABC transpo 99.7 6.8E-16 1.5E-20 166.4 13.2 151 644-806 17-224 (250)
212 PRK13546 teichoic acids export 99.6 5.9E-16 1.3E-20 167.5 12.4 142 644-787 38-212 (264)
213 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 4.9E-16 1.1E-20 166.2 11.6 141 644-787 17-206 (238)
214 COG4598 HisP ABC-type histidin 99.6 7.6E-16 1.7E-20 148.8 11.6 138 644-783 20-216 (256)
215 cd03251 ABCC_MsbA MsbA is an e 99.6 4.4E-16 9.4E-21 166.2 10.9 141 644-787 16-205 (234)
216 TIGR02324 CP_lyasePhnL phospho 99.6 6E-16 1.3E-20 164.0 11.9 142 644-787 22-218 (224)
217 PRK14273 phosphate ABC transpo 99.6 7.6E-16 1.6E-20 166.4 12.8 142 643-787 20-218 (254)
218 cd03254 ABCC_Glucan_exporter_l 99.6 7.3E-16 1.6E-20 163.9 12.4 141 644-787 17-206 (229)
219 COG4181 Predicted ABC-type tra 99.6 7.8E-16 1.7E-20 147.8 11.1 152 644-805 24-224 (228)
220 PRK13549 xylose transporter AT 99.6 5.4E-16 1.2E-20 184.1 12.5 154 643-807 18-223 (506)
221 PRK15079 oligopeptide ABC tran 99.6 4.9E-16 1.1E-20 173.3 11.4 143 644-787 35-231 (331)
222 cd03299 ABC_ModC_like Archeal 99.6 6.7E-16 1.4E-20 164.8 11.9 142 645-787 14-199 (235)
223 cd03248 ABCC_TAP TAP, the Tran 99.6 4.6E-16 9.9E-21 165.1 10.5 141 644-787 28-217 (226)
224 PRK09700 D-allose transporter 99.6 6.6E-16 1.4E-20 183.6 13.0 153 644-807 19-225 (510)
225 PRK10762 D-ribose transporter 99.6 6.6E-16 1.4E-20 183.1 13.0 153 644-807 18-221 (501)
226 COG4604 CeuD ABC-type enteroch 99.6 4E-16 8.7E-21 153.3 9.0 154 641-805 12-214 (252)
227 PRK10744 pstB phosphate transp 99.6 1.1E-15 2.3E-20 165.8 13.3 141 644-787 27-224 (260)
228 PRK11308 dppF dipeptide transp 99.6 8.9E-16 1.9E-20 171.1 12.9 153 644-806 29-234 (327)
229 PRK14247 phosphate ABC transpo 99.6 9.9E-16 2.1E-20 165.2 12.9 141 644-787 17-214 (250)
230 cd00267 ABC_ATPase ABC (ATP-bi 99.6 4.7E-16 1E-20 155.3 9.5 135 644-787 13-149 (157)
231 TIGR03269 met_CoM_red_A2 methy 99.6 7.9E-16 1.7E-20 183.4 13.2 143 644-787 14-238 (520)
232 PRK15439 autoinducer 2 ABC tra 99.6 9.2E-16 2E-20 182.1 13.6 141 645-787 278-472 (510)
233 PRK09580 sufC cysteine desulfu 99.6 1.3E-15 2.8E-20 164.0 13.6 139 644-784 15-210 (248)
234 PRK14237 phosphate transporter 99.6 1E-15 2.3E-20 166.5 12.9 152 643-806 33-241 (267)
235 PRK14248 phosphate ABC transpo 99.6 1.1E-15 2.5E-20 166.4 13.1 142 643-787 34-232 (268)
236 PRK13541 cytochrome c biogenes 99.6 6E-16 1.3E-20 160.3 10.4 139 645-786 16-190 (195)
237 PRK14269 phosphate ABC transpo 99.6 9E-16 2E-20 165.0 12.1 141 644-787 16-210 (246)
238 PRK14235 phosphate transporter 99.6 1.2E-15 2.6E-20 166.0 13.0 141 644-787 33-231 (267)
239 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 7.6E-16 1.7E-20 151.3 10.1 119 645-787 15-136 (144)
240 PRK09473 oppD oligopeptide tra 99.6 8.9E-16 1.9E-20 171.3 11.9 153 644-806 30-241 (330)
241 cd03233 ABC_PDR_domain1 The pl 99.6 1.1E-15 2.3E-20 159.3 11.6 141 644-787 21-189 (202)
242 cd03253 ABCC_ATM1_transporter 99.6 9.4E-16 2E-20 163.9 11.4 141 644-787 15-204 (236)
243 COG4133 CcmA ABC-type transpor 99.6 9.4E-16 2E-20 150.3 10.2 137 641-779 13-190 (209)
244 PRK14262 phosphate ABC transpo 99.6 1.5E-15 3.3E-20 163.7 13.0 141 644-787 17-214 (250)
245 PRK14274 phosphate ABC transpo 99.6 1.5E-15 3.3E-20 164.5 13.1 151 644-806 26-233 (259)
246 PRK14251 phosphate ABC transpo 99.6 2E-15 4.3E-20 162.9 13.8 141 644-787 18-215 (251)
247 CHL00131 ycf16 sulfate ABC tra 99.6 1.3E-15 2.7E-20 164.6 12.2 142 644-787 21-221 (252)
248 PRK13549 xylose transporter AT 99.6 1.2E-15 2.6E-20 181.2 12.9 142 644-787 276-474 (506)
249 PRK10762 D-ribose transporter 99.6 1.6E-15 3.5E-20 179.9 13.9 141 645-787 267-464 (501)
250 cd03289 ABCC_CFTR2 The CFTR su 99.6 1.7E-15 3.7E-20 164.6 12.9 142 643-787 17-205 (275)
251 PRK14256 phosphate ABC transpo 99.6 1.7E-15 3.8E-20 163.4 12.9 141 644-787 18-216 (252)
252 PRK14241 phosphate transporter 99.6 1.7E-15 3.8E-20 164.0 12.9 141 644-787 18-216 (258)
253 PRK14267 phosphate ABC transpo 99.6 1.6E-15 3.5E-20 163.7 12.6 141 644-787 18-217 (253)
254 PRK14244 phosphate ABC transpo 99.6 1.9E-15 4.1E-20 163.0 13.0 141 644-787 19-217 (251)
255 TIGR03771 anch_rpt_ABC anchore 99.6 1.6E-15 3.4E-20 160.6 12.2 134 652-787 2-182 (223)
256 PRK14239 phosphate transporter 99.6 2E-15 4.3E-20 163.0 13.0 141 644-787 19-216 (252)
257 PRK14240 phosphate transporter 99.6 2.3E-15 5E-20 162.3 13.4 141 644-787 17-214 (250)
258 PRK09700 D-allose transporter 99.6 1.3E-15 2.9E-20 181.1 12.5 141 645-787 278-478 (510)
259 PRK14270 phosphate ABC transpo 99.6 2.4E-15 5.2E-20 162.3 13.3 151 644-806 18-225 (251)
260 PRK15134 microcin C ABC transp 99.6 1.6E-15 3.5E-20 181.1 13.1 154 643-806 299-505 (529)
261 PRK15177 Vi polysaccharide exp 99.6 1.7E-15 3.7E-20 159.0 11.7 139 645-787 2-172 (213)
262 PRK14246 phosphate ABC transpo 99.6 2.1E-15 4.5E-20 163.0 12.6 142 643-787 23-221 (257)
263 PRK10938 putative molybdenum t 99.6 9.3E-16 2E-20 181.5 10.7 143 643-787 273-472 (490)
264 PRK15134 microcin C ABC transp 99.6 1.4E-15 3E-20 181.7 12.0 154 644-807 23-237 (529)
265 COG0396 sufC Cysteine desulfur 99.6 3.3E-15 7.1E-20 151.1 12.7 141 643-785 17-210 (251)
266 PRK10982 galactose/methyl gala 99.6 2E-15 4.4E-20 178.6 13.0 152 644-806 12-213 (491)
267 PRK14255 phosphate ABC transpo 99.6 3.4E-15 7.3E-20 161.2 13.5 141 644-787 19-216 (252)
268 TIGR02633 xylG D-xylose ABC tr 99.6 1.6E-15 3.5E-20 179.9 12.1 141 644-787 274-472 (500)
269 PRK14253 phosphate ABC transpo 99.6 3.4E-15 7.3E-20 160.9 13.5 142 643-787 16-213 (249)
270 PRK14261 phosphate ABC transpo 99.6 2.9E-15 6.2E-20 161.8 12.9 142 643-787 19-217 (253)
271 PRK11288 araG L-arabinose tran 99.6 1.8E-15 3.9E-20 179.4 12.2 151 644-806 18-219 (501)
272 TIGR02633 xylG D-xylose ABC tr 99.6 1.8E-15 4E-20 179.5 12.1 142 644-787 15-210 (500)
273 COG4559 ABC-type hemin transpo 99.6 4.9E-15 1.1E-19 147.5 13.0 156 642-808 13-222 (259)
274 cd03291 ABCC_CFTR1 The CFTR su 99.6 3.6E-15 7.7E-20 162.7 13.2 154 625-787 39-227 (282)
275 cd03290 ABCC_SUR1_N The SUR do 99.6 2.1E-15 4.5E-20 159.2 11.0 143 644-787 15-210 (218)
276 PRK14264 phosphate ABC transpo 99.6 4.1E-15 8.8E-20 164.8 13.8 166 612-787 34-268 (305)
277 TIGR01257 rim_protein retinal- 99.6 2.1E-15 4.5E-20 196.6 13.1 155 643-809 1952-2152(2272)
278 PRK14249 phosphate ABC transpo 99.6 4.1E-15 9E-20 160.4 13.4 141 644-787 18-215 (251)
279 PRK11288 araG L-arabinose tran 99.6 3E-15 6.4E-20 177.6 13.1 142 644-787 267-465 (501)
280 PRK14259 phosphate ABC transpo 99.6 3.3E-15 7.2E-20 162.7 12.4 141 644-787 27-222 (269)
281 PRK14271 phosphate ABC transpo 99.6 5E-15 1.1E-19 161.7 13.8 142 643-787 34-231 (276)
282 PRK10982 galactose/methyl gala 99.6 2.5E-15 5.4E-20 177.9 12.2 142 644-787 262-460 (491)
283 PRK14265 phosphate ABC transpo 99.6 4.3E-15 9.3E-20 162.1 13.0 142 643-787 33-229 (274)
284 TIGR03269 met_CoM_red_A2 methy 99.6 3.4E-15 7.3E-20 178.0 13.1 143 644-787 298-497 (520)
285 cd03369 ABCC_NFT1 Domain 2 of 99.6 3.5E-15 7.7E-20 156.1 11.6 137 644-787 22-192 (207)
286 COG1129 MglA ABC-type sugar tr 99.6 3.3E-15 7.1E-20 169.8 12.1 154 643-807 21-225 (500)
287 PRK14272 phosphate ABC transpo 99.6 4.9E-15 1.1E-19 160.0 13.0 151 644-806 18-226 (252)
288 cd03270 ABC_UvrA_I The excisio 99.6 4.5E-15 9.8E-20 157.2 12.5 142 644-787 9-207 (226)
289 PRK14254 phosphate ABC transpo 99.6 4.3E-15 9.3E-20 162.9 12.7 142 643-787 52-248 (285)
290 PRK13409 putative ATPase RIL; 99.6 2.8E-15 6E-20 179.4 11.9 143 644-787 353-523 (590)
291 cd03236 ABC_RNaseL_inhibitor_d 99.6 4.5E-15 9.8E-20 159.7 12.4 139 645-787 16-208 (255)
292 PRK14263 phosphate ABC transpo 99.6 7.3E-15 1.6E-19 159.2 14.0 141 644-787 22-217 (261)
293 COG4148 ModC ABC-type molybdat 99.6 2.9E-15 6.3E-20 154.6 9.7 151 648-808 16-210 (352)
294 PRK14238 phosphate transporter 99.6 5.8E-15 1.3E-19 160.9 12.6 141 644-787 38-235 (271)
295 PRK10261 glutathione transport 99.6 4E-15 8.7E-20 180.3 12.4 153 644-806 338-543 (623)
296 COG4525 TauB ABC-type taurine 99.6 2.1E-14 4.5E-19 141.0 14.8 143 644-787 19-202 (259)
297 PRK14243 phosphate transporter 99.6 1.1E-14 2.4E-19 158.2 14.5 141 644-787 24-219 (264)
298 PRK14258 phosphate ABC transpo 99.6 8.6E-15 1.9E-19 158.8 13.6 143 644-787 21-220 (261)
299 PF05188 MutS_II: MutS domain 99.6 2.2E-14 4.8E-19 139.6 14.8 129 139-274 1-130 (137)
300 COG4175 ProV ABC-type proline/ 99.6 6.7E-15 1.4E-19 154.5 11.5 151 646-806 44-244 (386)
301 PRK15064 ABC transporter ATP-b 99.6 4.7E-15 1E-19 177.1 11.9 138 644-787 15-221 (530)
302 PRK10261 glutathione transport 99.6 4.2E-15 9.2E-20 180.1 11.7 152 644-806 30-248 (623)
303 PRK14252 phosphate ABC transpo 99.6 1E-14 2.2E-19 158.6 13.2 141 644-787 30-229 (265)
304 PRK10636 putative ABC transpor 99.6 4.3E-14 9.4E-19 171.5 20.0 139 643-787 325-496 (638)
305 PRK14236 phosphate transporter 99.6 8.6E-15 1.9E-19 159.7 12.4 152 643-806 38-246 (272)
306 cd03288 ABCC_SUR2 The SUR doma 99.6 7.5E-15 1.6E-19 158.9 11.7 141 644-787 35-223 (257)
307 PRK14266 phosphate ABC transpo 99.6 1.4E-14 3E-19 156.3 13.5 141 644-787 17-214 (250)
308 PRK14257 phosphate ABC transpo 99.6 1E-14 2.3E-19 162.6 13.0 167 625-806 80-303 (329)
309 TIGR01257 rim_protein retinal- 99.6 5.8E-15 1.3E-19 192.5 12.3 153 643-808 943-1141(2272)
310 COG0444 DppD ABC-type dipeptid 99.6 1E-14 2.2E-19 155.9 11.6 143 644-787 19-223 (316)
311 cd03278 ABC_SMC_barmotin Barmo 99.6 8.5E-15 1.8E-19 151.5 10.8 133 647-787 14-184 (197)
312 PRK14260 phosphate ABC transpo 99.6 1.6E-14 3.4E-19 156.6 13.3 141 644-787 21-218 (259)
313 PRK10636 putative ABC transpor 99.6 8.8E-15 1.9E-19 177.6 12.4 140 643-787 14-215 (638)
314 PLN03211 ABC transporter G-25; 99.6 5.2E-15 1.1E-19 179.3 9.7 156 643-809 81-289 (659)
315 COG1123 ATPase components of v 99.6 1.5E-14 3.3E-19 165.5 12.8 143 644-787 23-224 (539)
316 PRK11819 putative ABC transpor 99.6 1.2E-14 2.7E-19 174.2 11.8 138 643-787 20-229 (556)
317 COG4674 Uncharacterized ABC-ty 99.5 2.1E-14 4.5E-19 141.1 10.6 155 642-808 17-227 (249)
318 PRK15064 ABC transporter ATP-b 99.5 1.6E-14 3.5E-19 172.5 12.1 139 643-787 332-504 (530)
319 COG1134 TagH ABC-type polysacc 99.5 1.2E-14 2.7E-19 149.0 9.1 154 644-808 41-228 (249)
320 COG3845 ABC-type uncharacteriz 99.5 1.9E-14 4E-19 160.3 10.6 154 646-810 20-223 (501)
321 COG4988 CydD ABC-type transpor 99.5 1.8E-13 4E-18 156.0 17.9 207 585-807 280-534 (559)
322 PRK13409 putative ATPase RIL; 99.5 4E-14 8.6E-19 169.5 12.7 140 643-787 87-280 (590)
323 TIGR01187 potA spermidine/putr 99.5 2.8E-14 6E-19 159.4 10.5 137 661-807 1-181 (325)
324 PRK11147 ABC transporter ATPas 99.5 3.7E-14 8.1E-19 172.5 12.5 138 643-787 16-222 (635)
325 COG4608 AppF ABC-type oligopep 99.5 3E-14 6.4E-19 149.3 9.8 143 644-787 27-179 (268)
326 TIGR01842 type_I_sec_PrtD type 99.5 2.7E-13 5.8E-18 162.7 19.4 157 626-787 317-522 (544)
327 PRK11819 putative ABC transpor 99.5 3.7E-14 8E-19 170.1 12.0 140 643-787 337-511 (556)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 3.6E-14 7.8E-19 170.2 11.7 139 643-787 335-509 (552)
329 COG4161 ArtP ABC-type arginine 99.5 8.1E-14 1.8E-18 132.5 11.6 154 644-808 16-222 (242)
330 PRK10535 macrolide transporter 99.5 6.3E-14 1.4E-18 170.6 12.7 154 644-808 22-224 (648)
331 PLN03073 ABC transporter F fam 99.5 5.2E-14 1.1E-18 171.5 11.9 139 643-787 522-693 (718)
332 PRK11147 ABC transporter ATPas 99.5 5.5E-14 1.2E-18 171.0 12.0 139 643-787 332-506 (635)
333 COG2274 SunT ABC-type bacterio 99.5 1.9E-13 4.2E-18 164.6 16.5 142 643-787 486-676 (709)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 5.8E-14 1.3E-18 168.4 11.8 138 644-787 19-227 (552)
335 COG4107 PhnK ABC-type phosphon 99.5 1.2E-13 2.5E-18 133.0 10.8 143 644-787 20-220 (258)
336 TIGR00955 3a01204 The Eye Pigm 99.5 6.7E-14 1.5E-18 169.5 11.6 157 642-809 37-249 (617)
337 PRK13657 cyclic beta-1,2-gluca 99.5 6.1E-13 1.3E-17 161.1 19.3 142 643-787 348-538 (588)
338 COG0488 Uup ATPase components 99.5 1E-12 2.2E-17 153.5 20.3 139 643-787 335-505 (530)
339 PRK10522 multidrug transporter 99.5 1.2E-13 2.7E-18 165.6 12.9 154 643-806 336-528 (547)
340 COG0488 Uup ATPase components 99.5 1.4E-13 3E-18 160.7 12.7 140 642-787 15-219 (530)
341 cd03271 ABC_UvrA_II The excisi 99.5 2.8E-13 6.1E-18 145.3 14.1 84 702-787 152-240 (261)
342 KOG0057 Mitochondrial Fe/S clu 99.5 6.8E-13 1.5E-17 149.1 17.5 153 643-807 365-565 (591)
343 COG1123 ATPase components of v 99.5 1.1E-13 2.3E-18 158.6 11.3 143 644-787 305-499 (539)
344 PRK10790 putative multidrug tr 99.5 8.2E-13 1.8E-17 160.2 19.3 142 643-787 354-543 (592)
345 TIGR02204 MsbA_rel ABC transpo 99.5 7.2E-13 1.6E-17 160.4 18.7 142 643-787 353-543 (576)
346 TIGR00954 3a01203 Peroxysomal 99.5 1.2E-13 2.6E-18 168.3 11.9 140 643-787 465-647 (659)
347 TIGR02203 MsbA_lipidA lipid A 99.5 7.4E-13 1.6E-17 160.1 18.6 142 643-787 345-536 (571)
348 TIGR01192 chvA glucan exporter 99.5 1E-12 2.2E-17 158.7 19.1 142 643-787 348-538 (585)
349 TIGR03375 type_I_sec_LssB type 99.5 1.1E-12 2.4E-17 161.8 19.8 142 643-787 478-668 (694)
350 PRK10789 putative multidrug tr 99.5 1.6E-12 3.6E-17 156.6 20.5 142 643-787 328-518 (569)
351 KOG0059 Lipid exporter ABCA1 a 99.5 1.5E-13 3.2E-18 172.0 11.9 154 645-810 580-781 (885)
352 PRK11174 cysteine/glutathione 99.5 1.7E-13 3.7E-18 166.1 11.8 141 643-787 363-552 (588)
353 COG4136 ABC-type uncharacteriz 99.5 1.3E-13 2.8E-18 129.7 8.3 138 644-782 16-198 (213)
354 PLN03073 ABC transporter F fam 99.5 2.5E-13 5.5E-18 165.5 13.2 140 643-787 190-410 (718)
355 KOG0927 Predicted transporter 99.5 1.4E-13 3E-18 153.9 9.9 159 632-805 386-584 (614)
356 PRK11160 cysteine/glutathione 99.5 3E-13 6.5E-18 163.0 13.2 142 643-787 353-542 (574)
357 PRK11176 lipid transporter ATP 99.5 2.6E-13 5.6E-18 164.4 12.7 142 643-787 356-547 (582)
358 TIGR01846 type_I_sec_HlyB type 99.5 1.2E-12 2.7E-17 161.4 18.7 142 643-787 470-660 (694)
359 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 1.3E-12 2.8E-17 161.1 18.8 150 643-806 466-663 (686)
360 PLN03140 ABC transporter G fam 99.4 2.7E-13 5.8E-18 176.2 13.0 154 644-808 894-1102(1470)
361 TIGR01194 cyc_pep_trnsptr cycl 99.4 4.1E-13 8.8E-18 161.2 13.7 152 644-805 356-548 (555)
362 COG1101 PhnK ABC-type uncharac 99.4 4.5E-13 9.8E-18 133.9 11.2 139 643-782 19-212 (263)
363 cd03274 ABC_SMC4_euk Eukaryoti 99.4 2.5E-13 5.4E-18 142.2 9.3 73 712-787 121-198 (212)
364 cd03279 ABC_sbcCD SbcCD and ot 99.4 4.6E-13 1E-17 140.7 10.3 137 647-785 18-199 (213)
365 COG4987 CydC ABC-type transpor 99.4 9.2E-13 2E-17 147.9 13.1 154 642-807 350-552 (573)
366 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 4.9E-13 1.1E-17 165.6 12.1 150 643-806 492-690 (710)
367 TIGR00956 3a01205 Pleiotropic 99.4 4.6E-13 1E-17 174.6 11.8 155 643-808 776-985 (1394)
368 COG4778 PhnL ABC-type phosphon 99.4 7.6E-13 1.6E-17 127.2 10.1 142 644-787 25-221 (235)
369 PF05190 MutS_IV: MutS family 99.4 3.4E-12 7.3E-17 115.3 13.5 92 465-563 1-92 (92)
370 TIGR01193 bacteriocin_ABC ABC- 99.4 4.4E-12 9.6E-17 156.9 19.1 151 643-806 487-687 (708)
371 TIGR02857 CydD thiol reductant 99.4 7.4E-13 1.6E-17 158.5 11.8 142 643-787 335-525 (529)
372 COG4138 BtuD ABC-type cobalami 99.4 3.1E-13 6.7E-18 130.4 5.8 137 648-787 17-201 (248)
373 PTZ00243 ABC transporter; Prov 99.4 9.4E-13 2E-17 173.3 11.3 153 643-806 673-860 (1560)
374 TIGR00958 3a01208 Conjugate Tr 99.4 1.4E-12 3E-17 161.0 12.1 150 643-806 494-692 (711)
375 TIGR00956 3a01205 Pleiotropic 99.4 1.1E-12 2.3E-17 171.3 11.1 154 645-808 76-292 (1394)
376 PLN03140 ABC transporter G fam 99.4 7.3E-13 1.6E-17 172.2 9.4 155 644-808 179-419 (1470)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.4 2.4E-12 5.2E-17 138.2 11.4 71 714-787 154-229 (243)
378 cd03240 ABC_Rad50 The catalyti 99.4 1.2E-12 2.5E-17 136.4 8.2 74 713-787 110-191 (204)
379 KOG0061 Transporter, ABC super 99.3 2.6E-12 5.7E-17 154.2 11.5 157 643-810 43-254 (613)
380 KOG0062 ATPase component of AB 99.3 2.4E-12 5.3E-17 143.3 9.6 137 641-782 91-258 (582)
381 PTZ00265 multidrug resistance 99.3 3.5E-12 7.7E-17 166.6 12.6 71 716-787 577-648 (1466)
382 cd03273 ABC_SMC2_euk Eukaryoti 99.3 4.8E-12 1E-16 136.5 11.6 71 714-787 162-237 (251)
383 TIGR01271 CFTR_protein cystic 99.3 2.9E-12 6.4E-17 168.5 11.3 154 643-807 439-627 (1490)
384 TIGR02868 CydC thiol reductant 99.3 3.8E-12 8.3E-17 152.3 11.3 134 643-779 348-529 (529)
385 TIGR00957 MRP_assoc_pro multi 99.3 1.4E-11 3E-16 162.7 17.3 153 643-806 651-840 (1522)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.3 7.8E-12 1.7E-16 134.4 11.7 69 717-787 154-227 (247)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.3 5.9E-12 1.3E-16 130.5 10.1 130 649-783 15-180 (198)
388 COG4618 ArpD ABC-type protease 99.3 7.1E-12 1.5E-16 139.6 10.5 154 642-807 348-551 (580)
389 cd03239 ABC_SMC_head The struc 99.3 1.3E-11 2.8E-16 125.6 10.2 123 657-787 23-166 (178)
390 COG1132 MdlB ABC-type multidru 99.3 2.1E-11 4.5E-16 147.2 12.7 152 642-806 341-542 (567)
391 PLN03232 ABC transporter C fam 99.3 1.6E-11 3.5E-16 161.9 12.5 153 643-806 630-818 (1495)
392 PLN03130 ABC transporter C fam 99.3 2.2E-11 4.8E-16 160.8 12.9 153 643-806 630-818 (1622)
393 KOG0055 Multidrug/pheromone ex 99.2 2.6E-11 5.7E-16 148.9 10.9 153 643-808 366-568 (1228)
394 COG4172 ABC-type uncharacteriz 99.2 3.3E-11 7.2E-16 130.5 10.2 153 644-806 301-506 (534)
395 KOG0927 Predicted transporter 99.2 1.3E-10 2.8E-15 130.4 15.1 139 644-787 89-288 (614)
396 KOG0056 Heavy metal exporter H 99.2 2.5E-11 5.4E-16 133.6 9.1 143 641-787 549-741 (790)
397 PTZ00265 multidrug resistance 99.2 5E-11 1.1E-15 156.0 13.2 144 643-787 1181-1427(1466)
398 PLN03232 ABC transporter C fam 99.2 2.2E-10 4.7E-15 151.3 19.2 152 643-806 1249-1448(1495)
399 COG4615 PvdE ABC-type sideroph 99.2 1.7E-10 3.6E-15 124.7 14.5 179 613-806 311-527 (546)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.2 3.8E-11 8.3E-16 125.8 8.8 72 715-787 123-201 (213)
401 TIGR01271 CFTR_protein cystic 99.2 5.9E-11 1.3E-15 156.3 11.8 142 643-787 1232-1420(1490)
402 PLN03130 ABC transporter C fam 99.2 8.1E-11 1.8E-15 155.5 12.8 153 643-807 1252-1452(1622)
403 PF00005 ABC_tran: ABC transpo 99.2 2.3E-11 4.9E-16 118.4 5.6 100 647-746 2-137 (137)
404 TIGR00630 uvra excinuclease AB 99.2 1.5E-10 3.4E-15 143.2 14.1 83 703-787 812-899 (924)
405 PRK00349 uvrA excinuclease ABC 99.2 2.2E-10 4.8E-15 142.2 15.0 82 704-787 815-901 (943)
406 PTZ00243 ABC transporter; Prov 99.2 1E-10 2.2E-15 154.2 12.9 151 643-805 1323-1522(1560)
407 COG4172 ABC-type uncharacteriz 99.2 2.2E-10 4.8E-15 124.2 12.5 143 643-787 23-227 (534)
408 COG4178 ABC-type uncharacteriz 99.2 1E-09 2.3E-14 127.7 18.8 142 643-787 406-582 (604)
409 TIGR00957 MRP_assoc_pro multi 99.1 1.2E-10 2.6E-15 153.9 11.8 152 643-806 1299-1498(1522)
410 PRK00635 excinuclease ABC subu 99.1 2.4E-10 5.1E-15 147.7 13.6 84 702-787 792-880 (1809)
411 KOG0058 Peptide exporter, ABC 99.1 1.9E-10 4E-15 134.2 10.7 142 642-787 480-671 (716)
412 COG2401 ABC-type ATPase fused 99.1 3.2E-10 6.9E-15 123.1 10.6 140 643-783 396-572 (593)
413 KOG0066 eIF2-interacting prote 99.0 5.9E-10 1.3E-14 121.1 9.2 136 642-782 599-764 (807)
414 COG1245 Predicted ATPase, RNas 99.0 8.8E-10 1.9E-14 121.3 9.5 131 654-785 365-522 (591)
415 COG1245 Predicted ATPase, RNas 99.0 2.2E-09 4.8E-14 118.2 11.7 131 654-787 98-281 (591)
416 KOG0055 Multidrug/pheromone ex 99.0 2.4E-09 5.3E-14 132.0 11.3 153 642-807 1002-1204(1228)
417 COG3910 Predicted ATPase [Gene 98.9 5.9E-09 1.3E-13 102.5 10.9 55 727-783 138-192 (233)
418 KOG2355 Predicted ABC-type tra 98.9 3.9E-09 8.5E-14 104.9 9.3 157 625-787 13-217 (291)
419 cd03241 ABC_RecN RecN ATPase i 98.9 3.7E-09 8E-14 115.6 9.8 66 719-787 171-241 (276)
420 KOG0060 Long-chain acyl-CoA tr 98.9 1.7E-08 3.7E-13 114.5 14.8 140 642-786 447-634 (659)
421 KOG0065 Pleiotropic drug resis 98.9 2.2E-09 4.7E-14 132.3 7.3 143 642-787 803-1000(1391)
422 KOG0064 Peroxisomal long-chain 98.8 3.8E-08 8.2E-13 110.2 13.3 140 643-787 495-677 (728)
423 KOG0054 Multidrug resistance-a 98.8 3.7E-08 8E-13 124.6 14.8 171 624-807 517-722 (1381)
424 COG4167 SapF ABC-type antimicr 98.8 1.6E-08 3.4E-13 98.8 8.8 139 648-787 31-219 (267)
425 COG1129 MglA ABC-type sugar tr 98.8 5.6E-08 1.2E-12 111.4 13.3 154 646-810 275-484 (500)
426 KOG0062 ATPase component of AB 98.7 6.3E-08 1.4E-12 108.7 11.9 162 631-806 358-558 (582)
427 COG5265 ATM1 ABC-type transpor 98.7 1.1E-07 2.3E-12 104.5 12.8 151 642-806 275-476 (497)
428 COG0178 UvrA Excinuclease ATPa 98.7 7.6E-08 1.7E-12 113.2 12.3 72 714-787 818-893 (935)
429 COG4170 SapD ABC-type antimicr 98.7 4.6E-08 9.9E-13 97.5 8.6 142 645-787 22-228 (330)
430 PF02463 SMC_N: RecF/RecN/SMC 98.6 1.6E-07 3.5E-12 99.2 10.6 52 733-787 156-207 (220)
431 PRK00635 excinuclease ABC subu 98.6 1.3E-07 2.8E-12 122.9 10.6 73 713-787 1694-1770(1809)
432 TIGR02858 spore_III_AA stage I 98.6 2.1E-07 4.6E-12 100.5 9.4 116 657-787 112-237 (270)
433 KOG0066 eIF2-interacting prote 98.5 5.6E-08 1.2E-12 106.1 3.5 135 648-787 282-478 (807)
434 PRK08533 flagellar accessory p 98.5 8.5E-07 1.8E-11 94.2 11.4 124 653-780 21-163 (230)
435 KOG0054 Multidrug resistance-a 98.4 7.4E-07 1.6E-11 113.0 11.1 143 642-787 1152-1342(1381)
436 PF13304 AAA_21: AAA domain; P 98.3 1.4E-06 3E-11 93.3 7.6 61 720-782 238-302 (303)
437 cd03242 ABC_RecF RecF is a rec 98.3 1.3E-06 2.8E-11 95.3 7.2 47 733-785 208-255 (270)
438 cd01124 KaiC KaiC is a circadi 98.2 3.1E-06 6.7E-11 86.8 8.9 121 658-781 1-142 (187)
439 PRK13695 putative NTPase; Prov 98.2 2.6E-06 5.7E-11 86.5 8.1 53 731-787 92-144 (174)
440 cd01120 RecA-like_NTPases RecA 98.2 8.3E-06 1.8E-10 81.0 10.0 121 658-780 1-138 (165)
441 PRK06067 flagellar accessory p 98.1 7.6E-06 1.6E-10 87.4 9.2 125 653-780 22-166 (234)
442 TIGR00630 uvra excinuclease AB 98.1 5.8E-06 1.3E-10 103.2 8.9 83 703-787 471-557 (924)
443 PRK00349 uvrA excinuclease ABC 98.1 7E-06 1.5E-10 102.6 8.8 84 702-787 472-559 (943)
444 PRK04296 thymidine kinase; Pro 98.0 3.1E-05 6.7E-10 79.9 10.4 145 656-825 2-159 (190)
445 smart00382 AAA ATPases associa 98.0 4.1E-05 8.9E-10 73.3 10.6 117 656-778 2-125 (148)
446 KOG0065 Pleiotropic drug resis 97.9 2.4E-05 5.2E-10 97.5 8.6 141 644-787 129-331 (1391)
447 cd01131 PilT Pilus retraction 97.9 4.1E-05 8.9E-10 79.5 8.3 114 658-787 3-117 (198)
448 KOG0063 RNAse L inhibitor, ABC 97.9 2.9E-05 6.4E-10 85.6 7.3 129 654-783 365-521 (592)
449 PRK07721 fliI flagellum-specif 97.8 0.0001 2.2E-09 85.1 11.9 148 644-808 147-335 (438)
450 TIGR02788 VirB11 P-type DNA tr 97.7 4.2E-05 9.1E-10 85.0 6.3 121 651-787 139-261 (308)
451 KOG0219 Mismatch repair ATPase 97.7 4.8E-06 1E-10 97.6 -2.4 214 629-860 627-841 (902)
452 PRK10869 recombination and rep 97.6 0.00027 5.9E-09 84.6 11.7 112 721-854 434-552 (553)
453 TIGR00634 recN DNA repair prot 97.6 0.00035 7.6E-09 84.2 12.0 110 722-853 445-561 (563)
454 PF13555 AAA_29: P-loop contai 97.6 5.5E-05 1.2E-09 62.1 3.5 33 647-680 15-47 (62)
455 cd00820 PEPCK_HprK Phosphoenol 97.6 3.2E-05 6.9E-10 71.1 2.2 34 644-677 3-36 (107)
456 cd00009 AAA The AAA+ (ATPases 97.6 0.00028 6E-09 68.2 8.7 109 655-780 18-131 (151)
457 PRK09183 transposase/IS protei 97.5 0.00026 5.7E-09 76.6 8.9 106 648-778 95-205 (259)
458 cd01125 repA Hexameric Replica 97.5 0.0004 8.6E-09 74.4 9.8 121 656-779 1-159 (239)
459 PRK14722 flhF flagellar biosyn 97.5 0.00023 5.1E-09 80.2 8.1 92 649-747 130-227 (374)
460 cd01130 VirB11-like_ATPase Typ 97.4 7.8E-05 1.7E-09 76.6 2.7 29 651-679 20-48 (186)
461 PRK06793 fliI flagellum-specif 97.4 0.00018 3.9E-09 82.4 5.7 131 650-785 150-292 (432)
462 COG3845 ABC-type uncharacteriz 97.4 0.0005 1.1E-08 78.0 8.6 151 646-807 274-483 (501)
463 PRK06995 flhF flagellar biosyn 97.3 0.00046 9.9E-09 80.3 7.8 87 654-747 254-346 (484)
464 PTZ00132 GTP-binding nuclear p 97.3 0.0005 1.1E-08 72.3 7.0 34 732-766 167-205 (215)
465 PRK14721 flhF flagellar biosyn 97.3 0.00087 1.9E-08 76.8 9.3 91 654-753 189-285 (420)
466 COG3854 SpoIIIAA ncharacterize 97.3 0.00081 1.7E-08 69.0 7.8 114 655-787 135-261 (308)
467 KOG0063 RNAse L inhibitor, ABC 97.2 0.00058 1.3E-08 75.7 7.0 65 721-787 217-281 (592)
468 PF00004 AAA: ATPase family as 97.2 0.00084 1.8E-08 64.2 7.5 103 659-780 1-113 (132)
469 PRK14723 flhF flagellar biosyn 97.2 0.00062 1.3E-08 82.8 7.9 95 647-748 176-276 (767)
470 TIGR03015 pepcterm_ATPase puta 97.2 0.0018 4E-08 70.4 10.8 23 656-678 43-65 (269)
471 PRK06893 DNA replication initi 97.2 0.00094 2E-08 71.0 8.3 94 656-779 39-134 (229)
472 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0011 2.3E-08 70.7 8.6 127 653-779 16-170 (235)
473 PTZ00454 26S protease regulato 97.2 0.0013 2.9E-08 75.4 9.8 25 654-678 177-201 (398)
474 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0035 7.5E-08 66.6 12.4 126 653-780 17-167 (229)
475 TIGR01420 pilT_fam pilus retra 97.2 0.00081 1.8E-08 76.0 8.0 114 654-783 120-234 (343)
476 PRK06526 transposase; Provisio 97.2 0.0017 3.7E-08 69.9 9.6 105 655-779 97-201 (254)
477 PRK06731 flhF flagellar biosyn 97.1 0.0029 6.3E-08 68.6 11.2 90 655-748 74-167 (270)
478 PRK03918 chromosome segregatio 97.1 0.00096 2.1E-08 85.4 8.5 53 733-787 810-862 (880)
479 cd01121 Sms Sms (bacterial rad 97.1 0.003 6.4E-08 71.8 11.5 120 653-778 79-209 (372)
480 PRK11889 flhF flagellar biosyn 97.1 0.0066 1.4E-07 68.3 13.4 88 656-749 241-334 (436)
481 PRK12727 flagellar biosynthesi 97.1 0.0045 9.7E-08 72.2 12.4 87 654-747 348-440 (559)
482 PHA02562 46 endonuclease subun 97.1 0.00097 2.1E-08 80.8 7.5 68 716-787 466-545 (562)
483 PRK05703 flhF flagellar biosyn 97.1 0.0028 6E-08 73.5 10.7 87 654-747 219-311 (424)
484 TIGR00618 sbcc exonuclease Sbc 97.1 0.0011 2.3E-08 86.0 8.1 71 713-785 945-1026(1042)
485 PRK06921 hypothetical protein; 97.1 0.0025 5.4E-08 69.3 9.7 102 655-778 116-224 (266)
486 TIGR03238 dnd_assoc_3 dnd syst 97.1 0.00026 5.7E-09 80.9 2.2 31 644-674 20-50 (504)
487 PF13401 AAA_22: AAA domain; P 97.0 0.0012 2.6E-08 63.3 6.2 114 655-778 3-125 (131)
488 PRK11823 DNA repair protein Ra 97.0 0.0032 6.9E-08 73.6 10.7 120 653-778 77-207 (446)
489 TIGR00416 sms DNA repair prote 97.0 0.0039 8.5E-08 72.9 11.4 121 653-779 91-222 (454)
490 cd01393 recA_like RecA is a b 97.0 0.0041 8.9E-08 65.8 10.7 126 653-779 16-169 (226)
491 PRK01156 chromosome segregatio 97.0 0.0016 3.5E-08 83.3 9.0 72 715-787 798-878 (895)
492 PF13481 AAA_25: AAA domain; P 97.0 0.0025 5.3E-08 65.7 8.8 125 654-778 30-188 (193)
493 cd02023 UMPK Uridine monophosp 97.0 0.00029 6.2E-09 73.1 1.7 23 658-680 1-23 (198)
494 cd01122 GP4d_helicase GP4d_hel 97.0 0.0025 5.4E-08 69.6 9.1 29 652-680 26-54 (271)
495 PRK12723 flagellar biosynthesi 97.0 0.0074 1.6E-07 68.8 13.1 87 655-748 173-267 (388)
496 PLN03210 Resistant to P. syrin 97.0 0.0013 2.9E-08 86.0 8.2 28 651-678 202-229 (1153)
497 PRK07952 DNA replication prote 97.0 0.0019 4.1E-08 69.0 7.9 105 657-778 100-204 (244)
498 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0055 1.2E-07 64.8 11.5 123 653-779 13-154 (224)
499 COG1618 Predicted nucleotide k 97.0 0.00083 1.8E-08 65.4 4.5 117 658-778 7-139 (179)
500 TIGR02169 SMC_prok_A chromosom 96.9 0.0054 1.2E-07 81.0 13.3 52 733-787 1094-1145(1164)
No 1
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-158 Score=1422.16 Aligned_cols=831 Identities=33% Similarity=0.494 Sum_probs=738.5
Q ss_pred hhccccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCCCCCccccccCHhHHHHHHHHHH
Q 002306 15 AKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLL 93 (938)
Q Consensus 15 ~~~~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~~~~~pm~gvp~~~~~~yl~~Lv 93 (938)
..+.||||+|||+||++ |||+||||||||||+||+||+.+|++|+++ ||.|++ +||||||+|+++.|+.+||
T Consensus 3 ~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~it---lT~r~~----~pm~gvP~h~~~~yl~~li 75 (843)
T COG0249 3 KAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDIT---LTKRGN----IPMAGVPYHALDYYLAKLI 75 (843)
T ss_pred cccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCce---eecCCC----CcCCCCccccHHHHHHHHH
Confidence 46789999999999999 999999999999999999999999999999 666664 9999999999999999999
Q ss_pred hhcCCeEEEEEeccC--------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecCCc
Q 002306 94 LERTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKR 165 (938)
Q Consensus 94 ~~~G~~kVaI~eQ~e--------~~R~v~riiTPGt~~~~ed~l~~~~~~~~~nyL~aI~~~~~~~~~~iGla~~D~stG 165 (938)
++| ||||||||+| ++|+|+|++||||++ ++.++ +..++||++||..... ..||+||+|+|||
T Consensus 76 -~~g-~kVAiceQ~e~~~~~k~~v~R~v~rv~TpGt~~--d~~~l---~~~~~n~l~a~~~~~~---~~~gla~~dlstG 145 (843)
T COG0249 76 -ELG-YKVAICEQLEDPAEAKGVVERKVVRVVTPGTLT--DEALL---SDRENNYLAALAIDRD---GKVGLAFIDLSTG 145 (843)
T ss_pred -hCC-CeEEEEEcccChhhhcCcceeEEEEEECCCeee--ccccc---cccccceEEEEEecCC---CEEEEEEEEcccC
Confidence 899 9999999998 589999999999984 56666 3458999999986432 2799999999999
Q ss_pred eEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCCCC
Q 002306 166 VLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVE 245 (938)
Q Consensus 166 ~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~l~~~~~~~~~ 245 (938)
+|++++|. +..+.+.|.+++|+|||++.+..... +.... ..+.+...+.+.|....+.+.+..+|. ...
T Consensus 146 ef~~~~~~----~~~l~~~l~r~~p~Eil~~~~~~~~~----~~~~~--~~~~~~~~~~~~f~~~~~~~~l~~~~~-~~~ 214 (843)
T COG0249 146 EFFVSEFE----REKLLSELKRLQPKELLLSESLLSST----LAEIQ--KGLFVVRLPASFFDEDDAEEILSEYFG-VRD 214 (843)
T ss_pred eEEEEEee----HHHHHHHHHhCCCcEEEeccccCchh----hhhhh--hceeeeecchhhcCccHHHHHHHHHhC-ccc
Confidence 99999997 67899999999999999998632211 11111 122456678899998888888999887 556
Q ss_pred CCccccCCcchHHHHHHHHHHHHHHhcccCCCCcceeEEeccCCeEEecHHHHHHcccccccCCCCccccHHHHhhhhcc
Q 002306 246 PVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCT 325 (938)
Q Consensus 246 ~~~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~ 325 (938)
+.+++....+.+++|+|+++.|++.++.....+...+..+...++|.||.+|++||||++|.++++++||||++||+ |+
T Consensus 215 l~~~~~~~~~~~~~a~~~ll~Y~~~t~~~~l~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~-t~ 293 (843)
T COG0249 215 LDGFGLISTPLALSAAGALLSYLKDTQKTFLPHIQIIQRYDLEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDR-TV 293 (843)
T ss_pred ccccccccchHHHHHHHHHHHHHHHhhhccccccccceeeccCcEEEEcHHHHhcccccccCCCCCCCCcHHHHhcc-CC
Confidence 67777666788999999999999988865566677788899999999999999999999999887788999999999 99
Q ss_pred CchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCcHHHHHHHHHhccCCHHHHHHHHHHHHhHH
Q 002306 326 AGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLP 405 (938)
Q Consensus 326 T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~ 405 (938)
|+||+|+|++||.+||+|.++|+.|||+|++|..+..+++.++..|+++||+||+++|+..++++++|+.++++++..++
T Consensus 294 T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~~~rDl~~l~~~l~~~~ 373 (843)
T COG0249 294 TPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRASPRDLLRLRDSLEKIP 373 (843)
T ss_pred CchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCCChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCcccccC-cccccCCCChhHHHHHHHHHHHHHHH
Q 002306 406 YIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENG-EYMISSSYDTGLSALKNEQESLERQI 484 (938)
Q Consensus 406 ~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~~~-~~~I~~~~d~~Ld~lr~~~~~~~~~l 484 (938)
.+...+...... ..+ ......+. .+ +.+.++..+++.++.++++... .++|+.||+++||++|...++.++++
T Consensus 374 ~i~~~l~~~~~~--~~l-~~~~~~i~-~~--~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i 447 (843)
T COG0249 374 EIFKLLSSLKSE--SDL-LLLLEDIE-SL--DYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWI 447 (843)
T ss_pred HHHHHHhccccc--hhh-hHHhhhhh-cc--ccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHH
Confidence 999988764311 001 11112222 22 3366888999999988876322 28999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHHHHHHHHHHHHHHH
Q 002306 485 HSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEY 564 (938)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~ 564 (938)
.+++.++++++|++ ++|+.|++++||||+|++...+.+| .+ |+++++.++..||+|+++++++.++.++++++
T Consensus 448 ~~le~~~r~~~gi~---slki~~n~v~Gy~ievt~~~~~~~p--~~--~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i 520 (843)
T COG0249 448 AKLELEERERTGIK---SLKIKYNKVYGYYIEVTKSNAKLVP--DD--YIRRQTLKNAERFTTPELKELEEKLLDAEEKI 520 (843)
T ss_pred HHHHHHHHHhcCCc---hhhhhhhccceeEEEechhccccCc--hH--HHHHHHHhcceEecCHHHHHHHHHHHHHHHHH
Confidence 99999999999997 8999999999999999999888887 44 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeeccCccc
Q 002306 565 KNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNF 644 (938)
Q Consensus 565 ~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~ 644 (938)
..+|.+++.++++.+..|.+.|+.++.++|+|||++|||..|.. .+||||+++++.. +.|++||||++|...+..|
T Consensus 521 ~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~--~~y~rP~~~~~~~--l~i~~gRHPvvE~~~~~~f 596 (843)
T COG0249 521 LALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAE--QNYVRPEFVDSND--LEIKEGRHPVVEAVLDNGF 596 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCceecCCCC--EEEEecCcchhhhhccCCc
Confidence 99999999999999999999999999999999999999999965 7999999998643 9999999999998765559
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHH
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEML 724 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~ 724 (938)
||||+.++. .+++++|||||||||||||||+|++++|||+||||||+.+.++++|+||||+|++|++..|.||||+||.
T Consensus 597 VpNd~~L~~-~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~ 675 (843)
T COG0249 597 VPNDIDLSG-NRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEML 675 (843)
T ss_pred ccCceeeCC-CceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHH
Confidence 999999984 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEE
Q 002306 725 ETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYH 804 (938)
Q Consensus 725 ~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~ 804 (938)
+++.||++||++|||||||.||||++.||.+||||+++||+++.+|.+||||||||++++... .+.+.|+|
T Consensus 676 Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~---------~~~v~N~h 746 (843)
T COG0249 676 ETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEK---------LPQVKNYH 746 (843)
T ss_pred HHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhc---------ccccceeE
Confidence 999999999999999999999999999999999999999998669999999999999999988 89999999
Q ss_pred EEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCCCcchhhhhhcccccCCCCCc
Q 002306 805 VSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPN 884 (938)
Q Consensus 805 ~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (938)
|.+.+. +++++|+|++.+|+|++||||+||++||+|.+||+||++++.+||+.+.... .+. ...
T Consensus 747 ~~~~e~--~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~~~~~~-------------~~~-~~~ 810 (843)
T COG0249 747 MSAVEE--GGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKESRSSN-------------LEL-NQK 810 (843)
T ss_pred EEEEEc--CCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhcccCcc-------------cch-hhh
Confidence 998877 7779999999999999999999999999999999999999999998753110 000 000
Q ss_pred ccccchhhhHHHHHHHccCCCCCCCHHHHHHHHHHHHH
Q 002306 885 DMSRGAARAHQFLKEFSDMPLETMDLKEALERVKRMKD 922 (938)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~l~~~~~ 922 (938)
.. ....++.++++++|+++|||. |++.|++||+
T Consensus 811 ~~----~~~~~i~~~~~~~~~~~~tp~-al~~l~~lk~ 843 (843)
T COG0249 811 DL----SLFPKVLKALKSLDPDELTPR-ALNLLYELKK 843 (843)
T ss_pred hH----hHHHHHHHHHHhCChhhcCHH-HHHHHHHhhC
Confidence 00 111268899999999999999 9999999974
No 2
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=2.8e-155 Score=1412.41 Aligned_cols=827 Identities=30% Similarity=0.451 Sum_probs=715.6
Q ss_pred cccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCC-CCCccccccCHhHHHHHHHHHHhh
Q 002306 18 ARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTG-SDALSSVSVSKNMFETIARDLLLE 95 (938)
Q Consensus 18 ~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~-~~~~pm~gvp~~~~~~yl~~Lv~~ 95 (938)
.||||+|||++|++ |||||||||||||||||+||+++|++|+++ |+.|+++ ..++||||||+|+++.|+++|| +
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~---lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv-~ 76 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDIS---LTSRGQSADEPIPMAGIPYHAVEAYLEKLV-K 76 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeE---EeecCCCCCCCCCcccCCHHHHHHHHHHHH-H
Confidence 49999999999999 999999999999999999999999999999 6666543 3579999999999999999998 9
Q ss_pred cCCeEEEEEeccC--------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecCCceE
Q 002306 96 RTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVL 167 (938)
Q Consensus 96 ~G~~kVaI~eQ~e--------~~R~v~riiTPGt~~~~ed~l~~~~~~~~~nyL~aI~~~~~~~~~~iGla~~D~stG~~ 167 (938)
+| ||||||||+| ++|+|+||+||||++ ++.++ +..++|||+||... ...+|+||+|+|||+|
T Consensus 77 ~G-~kVai~eQ~e~~~~~kg~v~Rev~ri~TpGT~~--~~~~l---~~~~~nyl~ai~~~----~~~~gla~~D~sTG~~ 146 (840)
T TIGR01070 77 QG-ESVAICEQIEDPKTAKGPVEREVVQLITPGTVS--DEALL---PERQDNLLAAIAQE----SNGFGLATLDLTTGEF 146 (840)
T ss_pred CC-CEEEEEEecCCchhcCCceeeEEEEEECCCccc--ccccc---cCCCCceEEEEEeC----CCeEEEEEEEccccEE
Confidence 99 9999999998 589999999999984 56666 45789999999632 2359999999999999
Q ss_pred EEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCCCCCC
Q 002306 168 GLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPV 247 (938)
Q Consensus 168 ~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~l~~~~~~~~~~~ 247 (938)
++++|.|+ +.|.++|.+++|+|||++.+... .. .. .+ . .|....+...+..+|+ ..++.
T Consensus 147 ~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~~~-~~-~~---~~-------~-----~f~~~~~~~~l~~~f~-~~~l~ 205 (840)
T TIGR01070 147 KVTELADK---ETLYAELQRLNPAEVLLAEDLSE-ME-AI---EL-------R-----EFRKDTAVMSLEAQFG-TEDLG 205 (840)
T ss_pred EEEEecCH---HHHHHHHhccCCeEEEEcCCCCh-HH-HH---Hh-------H-----hcchhHHHHHHHHhcC-ccchh
Confidence 99999874 35889999999999999875211 11 11 11 0 3444444455666665 33444
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhcccCCCCcceeEEeccCCeEEecHHHHHHcccccccCCCCccccHHHHhhhhccCc
Q 002306 248 RDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAG 327 (938)
Q Consensus 248 ~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~T~ 327 (938)
.++..+.+.+++|+|++++|++.++.....+...+..+..+++|.||++|++||||++|.+++ ++||||++||+ |+|+
T Consensus 206 ~~~~~~~~~~~~a~g~ll~Yl~~~~~~~~~~~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~~-~~gSL~~~ld~-t~T~ 283 (840)
T TIGR01070 206 GLGLRNAPLGLTAAGCLLQYAKRTQRTALPHLQPVRLYELQDFMQLDAATRRNLELTENLRGG-KQNTLFSVLDE-TKTA 283 (840)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhChhhhhhCCCcEEECCCCEEEeCHHHHHhccCCccCCCC-CCCcHHHHHhh-cCCH
Confidence 555556678999999999999998753333344577888999999999999999999987744 67899999999 9999
Q ss_pred hHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCcHHHHHHHHHhccCCHHHHHHHHHHHHhHHHH
Q 002306 328 MGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYI 407 (938)
Q Consensus 328 ~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~i 407 (938)
||+|+||+||++||+|+++|++|||+|++|.++..++..++..|+++||++|+++|+..++++++||..+++++..++.+
T Consensus 284 ~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~~~l 363 (840)
T TIGR01070 284 MGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGNARPRDLARLRTSLEQLPEL 363 (840)
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCcccc--cCcccccCCCChhHHHHHHHHHHHHHHHH
Q 002306 408 RSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLE--NGEYMISSSYDTGLSALKNEQESLERQIH 485 (938)
Q Consensus 408 ~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~--~~~~~I~~~~d~~Ld~lr~~~~~~~~~l~ 485 (938)
.+.|.... ...+..+...+ +.+.++.+.|+++|+.+++. .+++.|++|||++||++|+.++++++++.
T Consensus 364 ~~~l~~~~--------~~~l~~l~~~l--~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~ 433 (840)
T TIGR01070 364 RALLEELE--------GPTLQALAAQI--DDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLA 433 (840)
T ss_pred HHHHHhcC--------cHHHHHHHHhc--ccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 98887532 12233343444 67888899999999876542 34688999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHHHHHHHHHHHHHHHH
Q 002306 486 SLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYK 565 (938)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~ 565 (938)
++.++++++++++ ++++.|++++||+|+|+++....+| .+ |+..+++++..||+|++++++++++.++++++.
T Consensus 434 ~l~~~~~~~~~i~---~lk~~~~~~~gy~iev~~~~~~~vp--~~--~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~ 506 (840)
T TIGR01070 434 RLEARERERTGIP---TLKVGYNAVFGYYIEVTRGQLHLVP--AH--YRRRQTLKNAERYITPELKEKEDKVLEAEGKIL 506 (840)
T ss_pred HHHHHHHHHcCCC---ceEEEEecCceEEEEEehhhhhcCC--cc--eEEEEeccCceEEcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 8999999999999999988777776 34 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeeccCcccc
Q 002306 566 NCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFI 645 (938)
Q Consensus 566 ~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v 645 (938)
+++.+++.+|.+.+..+.+.|..+++++|+|||++|||.+|.. ++||||+|++++ .+.|++||||+++...+..||
T Consensus 507 ~~e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~~--~i~i~~~RHP~le~~~~~~~V 582 (840)
T TIGR01070 507 ALEKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAET--LHYTRPRFGDDP--QLRIREGRHPVVEQVLRTPFV 582 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCcCceecCCC--cEEEEeeECHHHHhccCCCeE
Confidence 9999999999999999999999999999999999999999987 789999998753 599999999999864445799
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHH
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLE 725 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~ 725 (938)
|||+.++ +.+++++||||||||||||||++|++++|||+||||||+.+.++++|+||+|+|+.|++..|.||||+||.+
T Consensus 583 pNdi~l~-~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e 661 (840)
T TIGR01070 583 PNDLEMA-HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTE 661 (840)
T ss_pred eeeeecC-CCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHH
Confidence 9999997 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEE
Q 002306 726 TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805 (938)
Q Consensus 726 ~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~ 805 (938)
++.|++.++++||||+||+|+|||+.||.+|++++++++.+..||.+||+|||++++.++.. .++|.|+||
T Consensus 662 ~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~---------~~~v~n~~~ 732 (840)
T TIGR01070 662 AANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEES---------LPGLKNVHV 732 (840)
T ss_pred HHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhh---------CCCeEEEEE
Confidence 99999999999999999999999999999999999999987579999999999999999988 899999999
Q ss_pred EEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhccCC-CCCCcchhhhhhcccccCCCCCc
Q 002306 806 SAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTP-SAVISDDAKIEVGSKRKRISDPN 884 (938)
Q Consensus 806 ~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 884 (938)
.+.++ +++++|+||+.+|+|++||||+||++||+|++||+||++++++||+... ..... . ..... ..+ +..
T Consensus 733 ~~~~~--~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~~~~~~~~~~-~--~~~~~-~~~--~~~ 804 (840)
T TIGR01070 733 AALEH--NGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEARSTESEAPQ-R--KAQTS-APE--QIS 804 (840)
T ss_pred EEEEE--CCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccccc-c--ccccc-cch--hhh
Confidence 99876 7899999999999999999999999999999999999999999996431 10000 0 00000 000 111
Q ss_pred ccccchhhhHHHHHHHccCCCCCCCHHHHHHHHHHHHH
Q 002306 885 DMSRGAARAHQFLKEFSDMPLETMDLKEALERVKRMKD 922 (938)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~l~~~~~ 922 (938)
.+.. +..++++++|+++|+|+|||+|||++|++||+
T Consensus 805 ~~~~--~~~~~~~~~l~~~d~~~~tp~~al~~l~~l~~ 840 (840)
T TIGR01070 805 LFDE--AETHPLLEELAKLDPDDLTPLQALNLLYELKK 840 (840)
T ss_pred hccc--cCCHHHHHHHHcCCCCCCCHHHHHHHHHHHhC
Confidence 1110 11235888999999999999999999999984
No 3
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=9.5e-154 Score=1408.33 Aligned_cols=837 Identities=32% Similarity=0.470 Sum_probs=729.6
Q ss_pred hhhccccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCC-CCCccccccCHhHHHHHHHH
Q 002306 14 DAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTG-SDALSSVSVSKNMFETIARD 91 (938)
Q Consensus 14 ~~~~~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~-~~~~pm~gvp~~~~~~yl~~ 91 (938)
+.++.||||+|||++|++ ||||||||||||||+||+||+++|++|+++ ++.++++ .+++||||||+|+++.|+++
T Consensus 4 ~~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~---lt~r~~~~~~~~pm~GvP~h~~~~yl~k 80 (854)
T PRK05399 4 DMSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDIT---LTKRGKSAGEPIPMAGVPYHAAEGYLAK 80 (854)
T ss_pred CcCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeE---EeeccCCCCCCCCEecCcHHHHHHHHHH
Confidence 345689999999999999 999999999999999999999999999999 5555442 46799999999999999999
Q ss_pred HHhhcCCeEEEEEeccC--------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecC
Q 002306 92 LLLERTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLT 163 (938)
Q Consensus 92 Lv~~~G~~kVaI~eQ~e--------~~R~v~riiTPGt~~~~ed~l~~~~~~~~~nyL~aI~~~~~~~~~~iGla~~D~s 163 (938)
|| ++| ||||||||+| ++|+|+||+||||++ |+.++ +..++|||+||... ...||+||+|+|
T Consensus 81 Lv-~~G-yKVaI~EQ~e~~~~~k~~v~R~v~~i~TpGT~~--~~~~l---~~~~~~yl~ai~~~----~~~~Gia~~D~s 149 (854)
T PRK05399 81 LV-KKG-YKVAICEQVEDPATAKGPVKREVVRIVTPGTVT--DEALL---DEKQNNYLAAIAQD----GGGYGLAYLDLS 149 (854)
T ss_pred HH-HCC-CEEEEEEecCChhhcCCccceEEEEEECCCeee--ccccc---CCCCCcEEEEEEEC----CCeEEEEEEECC
Confidence 99 999 9999999998 589999999999984 67666 45689999999863 247999999999
Q ss_pred CceEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCC
Q 002306 164 KRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGS 243 (938)
Q Consensus 164 tG~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~l~~~~~~~ 243 (938)
||+|++++| .+++|++.|.+++|+|||++++... .. +.. ....+...+.+.|+...+.+.+.++|+.
T Consensus 150 tg~~~~~~~----~~~~L~~~l~~~~P~Eil~~~~~~~-~~---~~~----~~~~~~~~~~~~f~~~~~~~~l~~~f~~- 216 (854)
T PRK05399 150 TGEFRVTEL----DEEELLAELARLNPAEILVPEDFSE-DE---LLL----LRRGLRRRPPWEFDLDTAEKRLLEQFGV- 216 (854)
T ss_pred CCeEEEEEE----cHHHHHHHHHhcCCcEEEEcCCcch-hh---Hhh----ccccceeccccccChHHHHHHHHHHhCc-
Confidence 999999999 2678999999999999999876321 11 111 1222344556688777788888888862
Q ss_pred CCCCccccCCcchHHHHHHHHHHHHHHhcccCCCCcceeEEeccCCeEEecHHHHHHcccccccCCCCccccHHHHhhhh
Q 002306 244 VEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRT 323 (938)
Q Consensus 244 ~~~~~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~ 323 (938)
.++..++. ..+.+++|+|+++.|++.++.....+...+..+..+++|.||++|++||||++|.++ +++||||++|||
T Consensus 217 ~~~~~~~~-~~~~~~~a~~all~Yl~~~~~~~~~~~~~~~~~~~~~~m~lD~~tl~~Lei~~~~~~-~~~gSL~~~ld~- 293 (854)
T PRK05399 217 ASLDGFGV-DLPLAIRAAGALLQYLKETQKRSLPHLRSPKRYEESDYLILDAATRRNLELTENLRG-GRKNSLLSVLDR- 293 (854)
T ss_pred CCccccCC-CCHHHHHHHHHHHHHHHHhchhhhhccCCCEEECCCCEEEcCHHHHHhccCCccCCC-CCCCcHHHHhcc-
Confidence 23333433 456789999999999998875333334457788999999999999999999998764 456799999999
Q ss_pred ccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCcHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 002306 324 CTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIR 403 (938)
Q Consensus 324 t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~ 403 (938)
|+|+||+|+||+||++||+|+++|++|||+|++|.++..++..++..|+++||++|+++|+..++++++||..+++++..
T Consensus 294 t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~ 373 (854)
T PRK05399 294 TVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGRANPRDLAALRDSLEA 373 (854)
T ss_pred CCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCcccc--cCcccccCCCChhHHHHHHHHHHHH
Q 002306 404 LPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLE--NGEYMISSSYDTGLSALKNEQESLE 481 (938)
Q Consensus 404 l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~--~~~~~I~~~~d~~Ld~lr~~~~~~~ 481 (938)
++.+.+.|.... ...+..+.+.+ +.+.++.+.|+++||.+.+. .+++.|++|||++||++|+.++++.
T Consensus 374 ~~~l~~~l~~~~--------~~~l~~l~~~l--~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~ 443 (854)
T PRK05399 374 LPELKELLAELD--------SPLLAELAEQL--DPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGK 443 (854)
T ss_pred HHHHHHHHHhcC--------cHHHHHHHhhc--ccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHH
Confidence 999998886532 12333343444 67888999999999987642 3468899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHHHHHHHHHHHH
Q 002306 482 RQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVL 561 (938)
Q Consensus 482 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~ 561 (938)
+++.++.++++++++++ ++++.|++++||+|+|+++....+| .+ |+..+++++..||+|++++++++++.+++
T Consensus 444 ~~l~~~~~~~~~~~~~~---~l~~~~~~~~gy~iev~~~~~~~vp--~~--~~~~~s~~~~~rf~t~~l~~l~~~l~~~~ 516 (854)
T PRK05399 444 DWLAELEARERERTGIS---SLKVGYNKVFGYYIEVTKANLDKVP--ED--YIRRQTLKNAERYITPELKELEDKILSAE 516 (854)
T ss_pred HHHHHHHHHHHHHcCCC---ceEEEEcCceeEEEEEEcchhhhCC--hh--hhheeeccCeEEEECHHHHHHHHHHHHHH
Confidence 99999999999999987 8999999999999999988776776 33 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeec-c
Q 002306 562 EEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQ-D 640 (938)
Q Consensus 562 ~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~-~ 640 (938)
+++.+.+.++++++.+.+.++.+.|+.+++++|+|||++|||.+|.. ++||||+|++++ .+.|++||||++|.. .
T Consensus 517 ~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~~--~l~i~~~rHP~le~~~~ 592 (854)
T PRK05399 517 EKALALEYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEE--NNYVRPEFTDDP--GIDIEEGRHPVVEQVLG 592 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCccccEEeCCC--CEEEEeccCcEEecccC
Confidence 99999999999999999999999999999999999999999999987 789999998753 599999999999975 3
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchH
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM 720 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~ 720 (938)
+..|||||+.|+ +.+++++||||||||||||||++|++++|||+||||||+.+.++++|+||+|+|+.|++..|.||||
T Consensus 593 ~~~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~ 671 (854)
T PRK05399 593 GEPFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFM 671 (854)
T ss_pred CCceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHH
Confidence 457999999998 6678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccce
Q 002306 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGV 800 (938)
Q Consensus 721 ~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v 800 (938)
+||.+++.|++.++++||||||||||||++.||.++++++++++.+..++++||+|||+++.+++++ +++|
T Consensus 672 ~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~---------~~~v 742 (854)
T PRK05399 672 VEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEK---------LPGV 742 (854)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhh---------cCCe
Confidence 9999999999999999999999999999999999999999999998547999999999999999988 8999
Q ss_pred eEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCCCcchhhhhhcccccCC
Q 002306 801 ANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRI 880 (938)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~ 880 (938)
.|+||.+... +++++|+|||.+|+|++||||+||++||+|++||+||++++++||+....... ......
T Consensus 743 ~n~~m~~~~~--~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~~~~~~~~-----~~~~~~---- 811 (854)
T PRK05399 743 KNVHVAVKEH--GGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLESASEKAKA-----ASAEED---- 811 (854)
T ss_pred EEEEEEEEEe--CCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccc-----cccccc----
Confidence 9999999865 78999999999999999999999999999999999999999999964311100 000000
Q ss_pred CCCcccccchhhhHHHHHHHccCCCCCCCHHHHHHHHHHHHHHhh
Q 002306 881 SDPNDMSRGAARAHQFLKEFSDMPLETMDLKEALERVKRMKDDLE 925 (938)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~l~~~~~~~~ 925 (938)
....+.. +..++++++|+++|+++|||.||++.|++||++++
T Consensus 812 -~~~~~~~--~~~~~~~~~~~~~~~~~~tp~~a~~~l~~l~~~~~ 853 (854)
T PRK05399 812 -QLSLFAE--PEESPLLEALKALDPDNLTPREALNLLYELKKLLK 853 (854)
T ss_pred -ccccccc--cccHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 1111110 01346899999999999999999999999999864
No 4
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=6.9e-126 Score=1070.56 Aligned_cols=829 Identities=46% Similarity=0.763 Sum_probs=753.9
Q ss_pred CcccchhhhccccHHHHHhcCCCCCCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCC-CCCccccccCHhHHH
Q 002306 8 LPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTG-SDALSSVSVSKNMFE 86 (938)
Q Consensus 8 ~~~~~~~~~~~~~~~~qy~~ik~~~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~-~~~~pm~gvp~~~~~ 86 (938)
++.+..|...+..|.++|..+++..+||+||.+||||..|+|||..+|+..+++..++++.+.. .+...+|.++...++
T Consensus 6 ~~~~~~d~~~~~~f~~f~~~l~~p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e 85 (902)
T KOG0219|consen 6 SATLGKDEAADRNFLKFYEGLPKPTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFE 85 (902)
T ss_pred chhhcccchhHHHHHHHHhcCCCCCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHH
Confidence 4556688888999999999998667999999999999999999999999999999988877653 467888999999999
Q ss_pred HHHHHHHhhcCCeEEEEEeccCCcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecCCce
Q 002306 87 TIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRV 166 (938)
Q Consensus 87 ~yl~~Lv~~~G~~kVaI~eQ~e~~R~v~riiTPGt~~~~ed~l~~~~~~~~~nyL~aI~~~~~~~~~~iGla~~D~stG~ 166 (938)
..++.|++..+ |+|++++.-+.+|++++..+||++.+|+|.++++++...++.++.+.....++.+.+|+|++|.+.-.
T Consensus 86 ~~vr~~l~~~~-~~Ve~y~~~~~~w~l~~~~sPGN~~~fedll~~~~~v~is~~~~~v~~~~~~~~~~vgv~~~d~~~~k 164 (902)
T KOG0219|consen 86 KVVRELLLVLR-YRVEVYSSNQGDWKLTKRGSPGNLVQFEDLLFSNNDVPISIISLIVKHPGVDGQRRVGVAFVDTINVK 164 (902)
T ss_pred HHHHHHHHHhc-cceEEeecCccceeEEecCCCCcHHHHHHHHcccccchhhhhheeEEeeccCCCceeEEEEechhhee
Confidence 99999999999 99999986667899999999999999999988644333333333343333245678999999999999
Q ss_pred EEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCCCCC
Q 002306 167 LGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEP 246 (938)
Q Consensus 167 ~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~l~~~~~~~~~~ 246 (938)
+++.+|.|++.|++++..+.+++|+|||++.+ ......+++..++.++++.++.+..++|+.++..+++...+++....
T Consensus 165 ~~~~ef~Dn~~~snle~~l~~lg~kEcll~~~-~~~~~~~kl~~~~~r~g~~~t~~~~~e~~~kdv~~~l~~~l~~~~~~ 243 (902)
T KOG0219|consen 165 IGLSEFVDDDSFSNLEALLIQLGPKECVLPEG-SVAGEMKKLRNIIDRCGVLITLRKKSESSWKDVEQDLNRLLKSQEHA 243 (902)
T ss_pred eehhhhcCcHHHHHHHHHHHhcCCeEEEecCc-ccchHHHHHHHHHhccCeEEEEecccchhHHHHHHHHHhcccchhhh
Confidence 99999999999999999999999999999943 33456788999999999999999999999988888888877643333
Q ss_pred CccccCCcchHHHHHHHHHHHHHHhcccCCCCcceeEEeccCCeEEecHHHHHHcccccccCCC-CccccHHH-Hhhhhc
Q 002306 247 VRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDA-NKNFSLFG-LMNRTC 324 (938)
Q Consensus 247 ~~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LEI~~~~~~~-~~~gSLf~-lLn~~t 324 (938)
..++.....++++++.+++.|+....+..+.+.+.+..+....+|.+|.+|.++|++|+...+. .+..+|.. +||| |
T Consensus 244 ~~~~e~~~q~a~~~~~~~i~yl~~~~e~~~s~~~ei~~~~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~-c 322 (902)
T KOG0219|consen 244 AYLPELELQLAMSALSALIKYLDLENEYSNSGKYELTNHGLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNH-C 322 (902)
T ss_pred ccchHHHhHHHHHHHHHHHHHHhhcccccccceEEEeecchHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhh-c
Confidence 4445555688999999999999776665667788888999999999999999999999865432 34457777 9999 9
Q ss_pred cCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHH-HhccCCcHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 002306 325 TAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQ-HLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIR 403 (938)
Q Consensus 325 ~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~-~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~ 403 (938)
+|++|.|+|++|+.+||+|+..|++|+|.|+.|+++.+.|+.++. .|..+||+.|+..|+. +++++|+.++|+...+
T Consensus 323 ~t~~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~--~~~L~d~~r~yq~~~~ 400 (902)
T KOG0219|consen 323 KTLQGERLLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLARRLM--KANLQDVNRIYQAAKL 400 (902)
T ss_pred ccccchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhhhhh--hcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 8999999999999998 7899999999999999
Q ss_pred HHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCcccccCcccccCCCChhHHHHHHHHHHHHHH
Q 002306 404 LPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESLERQ 483 (938)
Q Consensus 404 l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~~~~~~I~~~~d~~Ld~lr~~~~~~~~~ 483 (938)
+|.+...|..+..+...++.. ++.+.. ..+.++..++++++|++...++.+.|+++||++|.++|+.+++++..
T Consensus 401 l~~~~~~l~~~~~~~~~ll~~----~l~~~~--~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~ 474 (902)
T KOG0219|consen 401 LPTVVQVLISLSESHNRLLKS----PLTEHL--KKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERK 474 (902)
T ss_pred hHHHHHHHHhhhhhhhhhhhh----hhhhhh--hhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHH
Confidence 999999988765554444433 555555 78899999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHHHHHHHHHHHHHH
Q 002306 484 IHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEE 563 (938)
Q Consensus 484 l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~ 563 (938)
+.++..++..+++.+.+|+|+++.+..||||+++++++.+.++..++ |+.+++.|++++|+|.+|..||+++.+.+.+
T Consensus 475 m~~~hkrv~~dl~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~--y~eLstqK~GV~FTtk~L~slN~e~~~~qk~ 552 (902)
T KOG0219|consen 475 MEKLHKKVSADLGLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKN--YTELSTQKGGVKFTTKKLSSLNDEFMSLQKE 552 (902)
T ss_pred HHHHHHHHHhhcCCCcccceeeeccchhheeeeeeehhhhHhhccCC--ceEEEEeeCcEEEEhhhHhhhHHHHHHHHHH
Confidence 99999999999999988999999999999999999999999985566 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeeccCcc
Q 002306 564 YKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVN 643 (938)
Q Consensus 564 ~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~ 643 (938)
+...|.++.+++++....|.|.|..+++.+|.|||+.|||++|..++.+|+||.+.+.+...+.++++|||++|.+...+
T Consensus 553 Y~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~rl~l~~~rHp~lE~Qd~~~ 632 (902)
T KOG0219|consen 553 YDEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSKRLELKQSRHPVLEGQDEIP 632 (902)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchhHHHHHhcccchhhccccCC
Confidence 99999999999999999999999999999999999999999999888999999999987667999999999999988788
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 723 (938)
|+||++.|..+++++.+||||||+|||||+|++|.+++|||+|||||++.+.++++|.|++|.|+.|+..+|.||||.||
T Consensus 633 fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Em 712 (902)
T KOG0219|consen 633 FIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEM 712 (902)
T ss_pred CCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEE
Q 002306 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY 803 (938)
Q Consensus 724 ~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~ 803 (938)
.+++.|++.|++.||||+|||||||++.||..+||++-++++.+.||.+||+||+||++.++.. .+.++|.
T Consensus 713 leta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~---------~~~vKn~ 783 (902)
T KOG0219|consen 713 LETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQ---------LPTVKNL 783 (902)
T ss_pred HHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhh---------hhhhhhh
Confidence 9999999999999999999999999999999999999999998889999999999999999998 8999999
Q ss_pred EEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 002306 804 HVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860 (938)
Q Consensus 804 ~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~~ 860 (938)
||.+.++ +++++.+|++.+|+|++||||+||++||||+.||+.|+.++.+||+..
T Consensus 784 h~~a~i~--~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~ 838 (902)
T KOG0219|consen 784 HVTAQIE--NDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDEL 838 (902)
T ss_pred eeeeEec--CcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 9999998 789999999999999999999999999999999999999999999864
No 5
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-121 Score=1054.18 Aligned_cols=811 Identities=24% Similarity=0.349 Sum_probs=652.8
Q ss_pred hhhccccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCCCCCccccccCHhHHHHHHHHH
Q 002306 14 DAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDL 92 (938)
Q Consensus 14 ~~~~~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~~~~~pm~gvp~~~~~~yl~~L 92 (938)
--++.||+++|||+||++ .|||+||++|+|||+|++||.++++++++. .++ .++||||+|.++++.|+.++
T Consensus 244 ~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~-----f~~---vN~~~~GfPE~sf~~~a~q~ 315 (1125)
T KOG0217|consen 244 FWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLK-----FMD---VNMPHSGFPEGSFDYWADQF 315 (1125)
T ss_pred HHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhccee-----ecc---cccccCCCCccchhhHHHHH
Confidence 446789999999999999 999999999999999999999999999975 332 36999999999999999999
Q ss_pred HhhcCCeEEEEEeccC------------------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccc---cC
Q 002306 93 LLERTDHTLELYEGSG------------------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFR---EN 151 (938)
Q Consensus 93 v~~~G~~kVaI~eQ~e------------------~~R~v~riiTPGt~~~~ed~l~~~~~~~~~nyL~aI~~~~~---~~ 151 (938)
+ ++| ||||.+||+| ++|+|.+|+|.||+++ +.++. .....|++||.+... .+
T Consensus 316 i-q~G-YkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td--~~l~~---~~~akylmai~e~~~~~~~~ 388 (1125)
T KOG0217|consen 316 I-QKG-YKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTD--IALLT---SDLAKYLMAIKESEESYSTG 388 (1125)
T ss_pred H-hcc-ceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchh--HHHhc---cHHHHHHHHHhhcCCCCCcC
Confidence 8 999 9999999998 4899999999999975 44432 223679999987644 23
Q ss_pred CceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCceeeecccccccchh
Q 002306 152 GCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRD 231 (938)
Q Consensus 152 ~~~iGla~~D~stG~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~ 231 (938)
...+|+|++|++||+++++||+||...+.|.++|+++.|.|+|.+.+....+....+.-.+ .++......+.++||+.+
T Consensus 389 ~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~-~~~~~~n~~~~~eFwdse 467 (1125)
T KOG0217|consen 389 EVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKL-SSNLVENLVPKSEFWDSE 467 (1125)
T ss_pred ceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeee-cchhhhcccChhhhcchh
Confidence 5679999999999999999999999999999999999999999876532222211111001 112222335666887632
Q ss_pred -HHH-HHH-Hhhc---CCC--CCCccccCCcchHHHHHHHHHHHHHHhccc---CCCCcceeEEeccCCeEEecHHHHHH
Q 002306 232 -LVQ-DLD-RLVR---GSV--EPVRDLVSGFEIAPGALGALLSYAELLSDE---SNYGNYYIRKYSLDSYMRLDSAAMRA 300 (938)
Q Consensus 232 -~~~-~l~-~~~~---~~~--~~~~~~~~~~~~a~~AlgaLL~YL~~~~~~---~~~~~~~i~~~~~~~~M~LD~~Tl~~ 300 (938)
... .+. +++. .+. +...-+..+.+++++|+|+++.||+..... ....++..........|++|++|++|
T Consensus 468 k~~~eii~~dy~~~~g~e~~~sil~~p~~~~~la~safg~~~~Ylk~~~id~~llsm~n~~ey~~~~~s~mvlD~~tL~N 547 (1125)
T KOG0217|consen 468 KTGREIISEDYFESLGLEDSPSILKSPNTDKELALSAFGGLFYYLKKLLIDEELLSMKNFEEYDSLDQSEMVLDGATLEN 547 (1125)
T ss_pred hHHHHHhhhhhhhcccccCchhhccCCCccchhhHHHHHHHHHHHHHHhhHHHHhhhhhhhhcchhcccceeecchhhhh
Confidence 111 111 2222 011 111123345689999999999999975321 11223332222223449999999999
Q ss_pred cccccccCCCCccccHHHHhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCcHHHH
Q 002306 301 LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERL 380 (938)
Q Consensus 301 LEI~~~~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRl 380 (938)
||||.|.++|+.+||||.++|+ |.||||||||+.|+++||+|.+.|++|||+|+.|..++..+..+...|+++||+||+
T Consensus 548 leIf~Ns~~G~~~gtL~~~~~~-csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERl 626 (1125)
T KOG0217|consen 548 LEIFSNSRNGGDEGTLFYAVNR-CSTPFGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERL 626 (1125)
T ss_pred hhhhccCCCCCCchhHHHHHhh-ccChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC-HHHHHHHHHHHHhHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCccccc-C
Q 002306 381 MHNLEKRRAG-LQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLEN-G 458 (938)
Q Consensus 381 l~ri~~~~~~-~~dl~~l~~~l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~~-~ 458 (938)
+.|++.+..+ .+++..+.++|..+..+.+.+....+.........++..+...+ +++..=......++|...+.+ .
T Consensus 627 L~Rih~~~~~~~k~i~~f~rvLegfk~~~~~~~~~~~v~~~~~~~~~is~~~~~~--p~~~~~i~~~~~af~r~~a~~eg 704 (1125)
T KOG0217|consen 627 LVRIHNGGEKNKKKIADFIRVLEGFKEINKLLGSLINVLKEGEGLRLISELLESM--PNLSEEIENWTEAFDRVKAVKEG 704 (1125)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCc--chhhHHHHHHHHHHHHHHHhhcC
Confidence 9999998665 55555555555555555444443221111100111121111111 112222222333454433322 2
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEE
Q 002306 459 EYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLET 538 (938)
Q Consensus 459 ~~~I~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~ 538 (938)
.+.-..|||+++|+.-+..+++++.+.++++++++++++. ++.......--|.++|+.+-...++ .. |...++
T Consensus 705 ~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~c~---si~~~~vGk~~y~lEvP~n~~~~s~--~~--~~~~S~ 777 (1125)
T KOG0217|consen 705 VIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLGCS---SIVFVDVGKDVYQLEVPENGGVPSS--LR--YELMSA 777 (1125)
T ss_pred ccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCC---ceeEeecCceEEEEecCcccCCCCc--hH--HHHHHh
Confidence 3444679999999999999999999999999999999987 5555444444599999876433222 33 889999
Q ss_pred ecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 002306 539 RKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDI 618 (938)
Q Consensus 539 ~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~ 618 (938)
.|+..||.|++++.+-..+.+++++.......+.+++...+.++...|+.++.++|.||||+|+|.+|...+.++|||+|
T Consensus 778 ~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i 857 (1125)
T KOG0217|consen 778 KKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEI 857 (1125)
T ss_pred hcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877789999999
Q ss_pred CCCCCc--cEEEEccccceEeecc-CcccccCCcccc-CCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccc
Q 002306 619 NPPDVG--DIILEGSRHPCVEAQD-WVNFIPNDCKLI-RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRA 694 (938)
Q Consensus 619 ~~~~~~--~l~i~~~rhp~~~~~~-~~~~v~n~~~l~-~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~ 694 (938)
.+..+. -+.+++.+||++.... +..|+||++.++ .....+.++|||||+||||+||+++..++|||+||+|||+.+
T Consensus 858 ~~~~dt~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~ 937 (1125)
T KOG0217|consen 858 VESTDTPGFLIVKGLRHPCFSLPSTGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVM 937 (1125)
T ss_pred ecccCCCceeEEecccCceeecCcCCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHh
Confidence 765332 4899999999998643 346999999998 344556669999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEE
Q 002306 695 SISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774 (938)
Q Consensus 695 ~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~ 774 (938)
+++++|+||+|+|+.|++..|.|||+.|+.+++.|+..+|++|||++||.||||++.||.+||.+++++|....+|..+|
T Consensus 938 ~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fF 1017 (1125)
T KOG0217|consen 938 ELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFF 1017 (1125)
T ss_pred cccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred EeCChHHHHHhhhcccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHH
Q 002306 775 ATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAA 854 (938)
Q Consensus 775 ~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~ 854 (938)
+||||.++....+ +|.|+.+||.+.+++ ...++|+||+.+|+|++|||++||++||+|..||++|...+.
T Consensus 1018 STHYhsl~~~~~~---------~p~Vrl~~Ma~~vd~-e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~ 1087 (1125)
T KOG0217|consen 1018 STHYHSLCVDFMH---------HPQVRLLHMACVVDE-EIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAH 1087 (1125)
T ss_pred cccccchhHhhhc---------CccccchhheeeecC-CccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999876666 799999999999874 225999999999999999999999999999999999999999
Q ss_pred HhhccC
Q 002306 855 ELEDFT 860 (938)
Q Consensus 855 ~le~~~ 860 (938)
+|+...
T Consensus 1088 E~e~~~ 1093 (1125)
T KOG0217|consen 1088 ELEKSS 1093 (1125)
T ss_pred HHHHHH
Confidence 999864
No 6
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-119 Score=998.47 Aligned_cols=808 Identities=25% Similarity=0.356 Sum_probs=629.9
Q ss_pred hhhccccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCCCCCccccccCHhHHHHHHHHH
Q 002306 14 DAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDL 92 (938)
Q Consensus 14 ~~~~~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~~~~~pm~gvp~~~~~~yl~~L 92 (938)
+....||.-+||.++|.+ +|+||..++|+.|.+|++||++|||+|+|.. . .+.+|-.|+||.|.++.+++||
T Consensus 158 ~ks~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIyc----h---~dhnFmtaS~P~~Rl~vHleRL 230 (1070)
T KOG0218|consen 158 PKSKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYC----H---NDHNFMTASFPDVRLNVHLERL 230 (1070)
T ss_pred cccccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEE----E---eccceeeccCCcchhhHHHHHH
Confidence 666799999999999999 9999999999999999999999999999861 2 2457999999999999999999
Q ss_pred HhhcCCeEEEEEeccC--------------CcceeEEecCCCCccccccc--ccc--CCCCCCCcEEEEEeeccc-----
Q 002306 93 LLERTDHTLELYEGSG--------------SNWRLVKSGTPGNLGSYEDV--LFA--NNEMQDTPVIVALFPNFR----- 149 (938)
Q Consensus 93 v~~~G~~kVaI~eQ~e--------------~~R~v~riiTPGt~~~~ed~--l~~--~~~~~~~nyL~aI~~~~~----- 149 (938)
| .+| |||||++|+| ..|++.++.|.||+. ||. ++. ..-...++|++|+.....
T Consensus 231 v-~~g-~KVaVVkQtETAAiKs~gasRsslF~RklsavyTKaTl~--eds~~~~r~e~~~~~~ssfllcv~dn~~ksk~k 306 (1070)
T KOG0218|consen 231 V-HHG-LKVAVVKQTETAAIKSHGASRSSLFERKLSAVYTKATLG--EDSTFVLRGERILGDTSSFLLCVRDNVHKSKEK 306 (1070)
T ss_pred H-hcC-ceEEEEeehhhHHHHhcCCcccchHHHHHHHHhhhhhhc--cccccccchhhhcCCcceEEEEEehhhhhhhhh
Confidence 8 999 9999999998 299999999999984 554 221 111347899999976321
Q ss_pred cCCceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCceeeecccccccc
Q 002306 150 ENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKT 229 (938)
Q Consensus 150 ~~~~~iGla~~D~stG~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~ 229 (938)
++...+|+..+.++||++.+.+|.|+..++.|++.+..++|.|+|++.... +....+ +.+.++.+.......|.-
T Consensus 307 sg~v~vgligVqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~~ls--~qt~al---l~~~~Vsve~~~~rv~r~ 381 (1070)
T KOG0218|consen 307 SGVVKVGLIGVQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNTDLS--PQTVAL---LFKDNVSVELIHKRVYRL 381 (1070)
T ss_pred cCceEEEEEEEecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCCCc--HHHHHH---HHhcccchhhhhhhhhhc
Confidence 124679999999999999999999999999999999999999999986522 221221 111122111111111221
Q ss_pred h--------hHHHHHHHhhcCCCCCC------ccccCCcchHHHHHHHHHHHHHHhcccCCC--CcceeEEeccCCeEEe
Q 002306 230 R--------DLVQDLDRLVRGSVEPV------RDLVSGFEIAPGALGALLSYAELLSDESNY--GNYYIRKYSLDSYMRL 293 (938)
Q Consensus 230 ~--------~~~~~l~~~~~~~~~~~------~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~--~~~~i~~~~~~~~M~L 293 (938)
. -+.+.+.+++.....+. .......+-.++.++++++||.+......+ +.|. ...+...+|.|
T Consensus 382 ~naV~q~ikla~e~~q~f~~~k~~l~gs~ii~li~nl~~psvic~la~~is~lkefnlE~~l~~psf~-s~~ss~e~Mtl 460 (1070)
T KOG0218|consen 382 ENAVVQAIKLANEKIQNFEDDKEMLEGSEIICLIMNLSHPSVICLLAKLISHLKEFNLEQVLLIPSFY-SPFSSKEHMTL 460 (1070)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHhchHHheeccccc-Ccccccceeee
Confidence 1 12222332222110000 000011233566699999999986432211 1111 12344568999
Q ss_pred cHHHHHHcccccccCCCCccccHHHHhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHH---hChHHHHHHHHH
Q 002306 294 DSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV---DDTALRQDLRQH 370 (938)
Q Consensus 294 D~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~---~~~~l~~~lr~~ 370 (938)
+++|+++||||.|++|++.+|||||+||| |.|.+|.|+||+|+.+||+|...|++|+|||+++. +|...++.++..
T Consensus 461 s~ntLq~Leif~nqtd~~~kGSLfwvldh-T~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~vf~si~~~ 539 (1070)
T KOG0218|consen 461 SPNTLQSLEIFTNQTDGSEKGSLFWVLDH-TRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIVFESINQM 539 (1070)
T ss_pred chhhhhceeeeeecCCCCcccceEEEecc-chhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999993 345588999999
Q ss_pred hccCCcHHHHHHHHHhccCCH-HHHHHH----HHHHHhHHHHHHHHhhhh-----cchhhhhhHhhHhhhhhccCCchHH
Q 002306 371 LKRISDIERLMHNLEKRRAGL-QQIVKL----YQSSIRLPYIRSALQQYE-----GQFSSLIKERYLDPLESLTDDDHLN 440 (938)
Q Consensus 371 Lk~i~DleRll~ri~~~~~~~-~dl~~l----~~~l~~l~~i~~~L~~~~-----~~~~~~l~~~~~~~l~~~~~~~~l~ 440 (938)
|.+.|||+|-+.||..++++| +++..+ |.+...+..+...+..+. ...++.+....+..+.+-.....++
T Consensus 540 l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~ 619 (1070)
T KOG0218|consen 540 LNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLP 619 (1070)
T ss_pred HHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHH
Confidence 999999999999999999999 565543 333333333322222111 0122223333344442211125566
Q ss_pred HHHHHHHhhcCCcccccCcccc-----cCCCChh--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeE
Q 002306 441 KFIALVETSVDLDQLENGEYMI-----SSSYDTG--LSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGH 513 (938)
Q Consensus 441 ~l~~~i~~~id~~~~~~~~~~I-----~~~~d~~--Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy 513 (938)
.++.+++..--.+. +..-.+ -|.+++. +....+........+.+.++++++.+..+ ++.+.-....-|
T Consensus 620 hfL~mln~~aa~~g--nk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~~~hLaeiRk~Lk~p---nlef~~vsgv~f 694 (1070)
T KOG0218|consen 620 HFLTMLNVSAAMEG--NKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQLKEHLAEIRKYLKRP---NLEFRQVSGVDF 694 (1070)
T ss_pred HHHHHhhHHHHhhC--ChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEecCeeE
Confidence 66666543111000 000011 1112111 11111222223345667788888888776 443332232349
Q ss_pred EEEEecCcccccccccCccEEEEEEecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 002306 514 VFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATML 593 (938)
Q Consensus 514 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~i 593 (938)
+|+|+.+...++| .+ |+.+++++...||+||+++++-.++...++.........+.++.+.+..|...|+++...+
T Consensus 695 lIEvkns~~kkiP--~d--WiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~L 770 (1070)
T KOG0218|consen 695 LIEVKNSQIKKIP--DD--WIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNL 770 (1070)
T ss_pred EEEecccccccCC--cc--ceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877777887 55 9999999999999999999999999999998888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhh
Q 002306 594 SELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFI 673 (938)
Q Consensus 594 a~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTll 673 (938)
|.+||+.|||.+|++ .+||||+|+++. ..|.|++||||++|......|||||+.++.+.+++.+||||||+|||+|+
T Consensus 771 atlDCi~SlA~~s~n--~nYvRPtfvd~~-~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~egerc~IITGPNMGGKSsyI 847 (1070)
T KOG0218|consen 771 ATLDCILSLAATSCN--VNYVRPTFVDGQ-QEIIIKNGRHPVIESLLVDYFVPNDIMLSPEGERCNIITGPNMGGKSSYI 847 (1070)
T ss_pred HHHHHHHHHHHHhcc--CCccCcccccch-hhhhhhcCCCchHHHHhhhccCCCcceecCCCceEEEEeCCCCCCchHHH
Confidence 999999999999987 799999999863 45999999999999765567999999999999999999999999999999
Q ss_pred hhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 674 RQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 674 r~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
||+|++.+|||+|+||||+.+.++++|.+|+|||+.|++..|.||||.||..+..|++.|+++|||||||.||||++.||
T Consensus 848 rQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDG 927 (1070)
T KOG0218|consen 848 RQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDG 927 (1070)
T ss_pred HHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccc-eeEEEEEEEEEcc-----CCceeeeeeecCCCC
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVG-VANYHVSAHIDST-----SRKLTMLYKVEPGAC 827 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~-----~~~~~~~ykl~~G~~ 827 (938)
.||++|+++|+.+..+|.+||+|||+.+.++... +|+ |.||||.+...++ .+.++|+|||++|.|
T Consensus 928 iAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~---------f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGla 998 (1070)
T KOG0218|consen 928 IAISYATLKYFSELSKCLILFVTHFPMLGEIESG---------FPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLA 998 (1070)
T ss_pred hhHHHHHHHHHHHhhceeEEeeecCcchhhhhcC---------CCccccceeeeeeeeccccCCCchhhhhHHHHhhhhh
Confidence 9999999999998789999999999999998877 654 9999999887432 367999999999999
Q ss_pred CCCchHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 002306 828 DQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860 (938)
Q Consensus 828 ~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~~ 860 (938)
.+|||++||++|++|.+||.||-.++++||+..
T Consensus 999 srSyGlnVAklA~ip~sii~rA~siSeeleke~ 1031 (1070)
T KOG0218|consen 999 SRSYGLNVAKLARIPKSIINRAFSISEELEKES 1031 (1070)
T ss_pred hccccccHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864
No 7
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=8.4e-82 Score=701.52 Aligned_cols=737 Identities=27% Similarity=0.391 Sum_probs=596.2
Q ss_pred CCCcEEEEEeeccccCCceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHh-h-
Q 002306 136 QDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDAL-T- 213 (938)
Q Consensus 136 ~~~nyL~aI~~~~~~~~~~iGla~~D~stG~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l-~- 213 (938)
.....++++.+.++....+||+|.+|.-+|+.++++|.|+..|..+.+.+.-++|-||+++.........+.+-.+. +
T Consensus 101 ~~~~v~~~v~e~r~~~~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~skl~~~~~~e~ 180 (867)
T KOG0220|consen 101 HSPSVIVAVVEGRGLARGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTLITEN 180 (867)
T ss_pred CCCceEEEEEecCCcccceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccchHHHHHHHHhhc
Confidence 44568888888877667899999999999999999999999999999999999999999997633222222222222 1
Q ss_pred hcCceeeecccccccchhHHHHHHHhhcCCCCCCccccCCcchHHHHHHHHHHHHHHhcccC-CCCcceeEEeccCCeEE
Q 002306 214 RCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVSGFEIAPGALGALLSYAELLSDES-NYGNYYIRKYSLDSYMR 292 (938)
Q Consensus 214 ~~~~~i~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~AlgaLL~YL~~~~~~~-~~~~~~i~~~~~~~~M~ 292 (938)
..++.++......|.++++.+.+.+++....+...-.+.+..++++|+|++++|++..+..- .+...++......+.+.
T Consensus 181 ~~~v~~~~~s~k~fns~~gl~~i~~~~~~~~s~vle~i~~k~~al~a~a~llky~~~~~~~~~~~~slri~~~gs~nT~~ 260 (867)
T KOG0220|consen 181 FKNVNFTTISRKYFNSTKGLEYIEQLCIAEFSTVLEEIQSKTYALGAAAALLKYVEEIQSSVYAPKSLRICFQGSENTAM 260 (867)
T ss_pred ccccceeehhhhhcCchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeecccceee
Confidence 12334455667788888888888777653222222223456889999999999999876311 23356777888899999
Q ss_pred ecHHHHHHcccccccCCCCccccHHHHhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhc
Q 002306 293 LDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLK 372 (938)
Q Consensus 293 LD~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk 372 (938)
||..+.++|||+++.. -+.+.+|++++|+ |.|++|.|.||..+.+||+|...|+.|++++++|..++++...++..+|
T Consensus 261 id~~~~~~lelV~~~~-~kn~~~l~~vl~~-T~t~~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~~~k 338 (867)
T KOG0220|consen 261 IDSSSAQSLELVINNQ-YKNNHTLFGVLNY-TKTPGGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIK 338 (867)
T ss_pred eecccccceEEechhh-hhcccceeeeeee-eecccchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHHHHh
Confidence 9999999999998764 4456799999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhcc---------CCHHHHHHHHHHHHhHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHH
Q 002306 373 RISDIERLMHNLEKRR---------AGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFI 443 (938)
Q Consensus 373 ~i~DleRll~ri~~~~---------~~~~dl~~l~~~l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~ 443 (938)
+.+|++++++++..-. .....+..+..++..+..++..|.... ...+....+.+..+.+..+.
T Consensus 339 ~~~dld~~~s~~~~~~~~~~i~~~~s~I~~~~~Lk~tL~lv~~~~~al~~~~--------s~~~~e~~~~~~~~r~~~i~ 410 (867)
T KOG0220|consen 339 RFLDLDQLLSVLVQIPTQDTVNAAESKINNLIYLKHTLELVDPLKIALKNCN--------SNLLREYYGSFKDKRFGIIL 410 (867)
T ss_pred hhhhHHHHHHHHHhhhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhch--------hHHHHHHHHHhcchHHHHHH
Confidence 9999999998765321 111223345555555555555554321 11222233333235677778
Q ss_pred HHHHhhcCCccc---------ccCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEE
Q 002306 444 ALVETSVDLDQL---------ENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHV 514 (938)
Q Consensus 444 ~~i~~~id~~~~---------~~~~~~I~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~ 514 (938)
+.|.+.||.+.. ..+.+.++.+.+..||-.|+.+.++..+..+...++.++..+ .+++.|+...||+
T Consensus 411 ~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~~~----nl~~~f~sarGF~ 486 (867)
T KOG0220|consen 411 EKIKEVINDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFSL----NLRLSFSSARGFF 486 (867)
T ss_pred HHHHHHhhHHHHhccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----cccccccccccEE
Confidence 888888877653 234688999999999999999999999988888888887755 6888899999999
Q ss_pred EEEecCcc----cccccccCccEEEEEEecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 002306 515 FRITKKEE----PKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLA 590 (938)
Q Consensus 515 i~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~ 590 (938)
|+++.... ..+| . .|+.....++..+|+|..+..+|.++.+...++.-....++.++.+.+..+.+.+..++
T Consensus 487 ~ri~~~~~~~~~~~lP--~--~fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~ia 562 (867)
T KOG0220|consen 487 IRITTDCIALPSDTLP--S--EFIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLA 562 (867)
T ss_pred EEeeccccccccccCc--h--hhhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99987632 2233 2 38888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCch
Q 002306 591 TMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKS 670 (938)
Q Consensus 591 ~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKS 670 (938)
++++-||+++|||+.... .+|+||++++. +.|++||||++|......++.|+..++ ...++.+||||||||||
T Consensus 563 e~~~~lD~l~sfa~~~~~--~~y~~P~fT~s----laI~qGRHPILe~i~~ek~i~N~t~~t-~~s~f~IITGPNMsGKS 635 (867)
T KOG0220|consen 563 EAVSMLDMLCSFAHACTL--SDYVRPEFTDS----LAIKQGRHPILEKISAEKPIANNTYVT-EGSNFLIITGPNMSGKS 635 (867)
T ss_pred HHHHHHHHHHHHHHhhcc--ccccccccCCc----eeeccCCCchhhhhcccCcccCcceee-cccceEEEECCCCCcch
Confidence 999999999999998775 58999999873 999999999999876667889999987 55789999999999999
Q ss_pred hhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 002306 671 TFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTST 750 (938)
Q Consensus 671 Tllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~ 750 (938)
|||||+|++++|||+||||||..+.++++++||+|||..|++..+.|+||.||++.+.|++.++.+|||+|||+||||++
T Consensus 636 TYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSt 715 (867)
T KOG0220|consen 636 TYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTST 715 (867)
T ss_pred HHHHHHHHHHHHHHhccCcchhhccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEEEEEccCCceee-eeeecCCCC-C
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTM-LYKVEPGAC-D 828 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~ykl~~G~~-~ 828 (938)
.||.+|.||+.|++.. .++.++++||+.++++++.. .|.|.|+||.+... ++...+ .|||..|.. +
T Consensus 716 eeGiaityAvCE~lL~-LkayTflATHFldIa~lan~---------~paVdnlHF~~q~~--eNssk~~k~kLsrg~~~~ 783 (867)
T KOG0220|consen 716 EEGIAITYAVCEYLLS-LKAYTFLATHFLDIAAIANY---------YPAVDNLHFLVQTD--ENSSKNKKYKLSRGLTEE 783 (867)
T ss_pred ccchhhHHHHHHHHHH-hhHhHHHHHHHHHHHHHhhc---------Cccccceeeeeeec--ccchhhhhhhhhhhhhhc
Confidence 9999999999999997 78999999999999999998 99999999999876 444443 699999975 6
Q ss_pred CCchHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCCCcchhhhhhcccccCCCCCcccccchhhhHHHHHHHccCCCCCC
Q 002306 829 QSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEFSDMPLETM 908 (938)
Q Consensus 829 ~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (938)
.-||+.+|++.-+|++|++.|+.++-++-..-.....+ ...+.. +..+--..+.+.+.-=+.
T Consensus 784 ~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~v~~~~rd---------------~~~~~r--q~~Vy~~a~~~~~t~gn~- 845 (867)
T KOG0220|consen 784 KNYGLKAAEVSSLPDSIVEDAKEITTQITAQILQNQRD---------------TPEMER--QRAVYHLATRLVQTAGNS- 845 (867)
T ss_pred ccccceEEEEecCCHHHHHhhhHHHHHHHHHHHhhccC---------------chHHHH--HHHHHHHHHHHHHhhCCC-
Confidence 79999999999999999999999988877643211100 000000 011111233344443344
Q ss_pred CHHHHHHHHHHHHHHhhhh
Q 002306 909 DLKEALERVKRMKDDLEKD 927 (938)
Q Consensus 909 ~p~~a~~~l~~~~~~~~~~ 927 (938)
.+.+|+.+|++|++.+.+.
T Consensus 846 ~e~~~~~klk~l~k~~ve~ 864 (867)
T KOG0220|consen 846 DEDSLRIKLKNLKKKYKED 864 (867)
T ss_pred CcHHHHHHHHHHHHHHHhh
Confidence 7788999999999988774
No 8
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-80 Score=678.37 Aligned_cols=585 Identities=25% Similarity=0.430 Sum_probs=502.8
Q ss_pred cchHHHHHHHHHHHHHHhcc-----cCCC--CcceeEEeccCCeEEecHHHHHHcccccccCC-------CCccccHHHH
Q 002306 254 FEIAPGALGALLSYAELLSD-----ESNY--GNYYIRKYSLDSYMRLDSAAMRALNVLESKTD-------ANKNFSLFGL 319 (938)
Q Consensus 254 ~~~a~~AlgaLL~YL~~~~~-----~~~~--~~~~i~~~~~~~~M~LD~~Tl~~LEI~~~~~~-------~~~~gSLf~l 319 (938)
-+.++.++|+++.++..... +.++ ....+++..+.+.|.||.+|+.+|+||++... -+++.|||++
T Consensus 193 i~~~~r~~g~ll~fl~~~rigv~l~~~~v~~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf~l 272 (849)
T KOG0221|consen 193 IEAVVRALGGLLKFLGRRRIGVELEDYNVSVPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLFGL 272 (849)
T ss_pred hHHHHHhhhhHHhhcccceeeeeeccccccccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHHHH
Confidence 35678999999999986532 1111 23467788899999999999999999987653 1346799999
Q ss_pred hhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHh--ChHHHHHHHHHhccCCcHHHHHHHHHhccCCHHHHHHH
Q 002306 320 MNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVD--DTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKL 397 (938)
Q Consensus 320 Ln~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~--~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l 397 (938)
+|+ |++..|+|+||.|+.+|++|..+|..||++|.+|+. |.+..+.+...|++++|+.-+++|++.|..++.+|..+
T Consensus 273 ~n~-c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t~l~~W~~~ 351 (849)
T KOG0221|consen 273 LNR-CHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHTKLSDWQVL 351 (849)
T ss_pred HHH-HhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCceechHHHH
Confidence 999 999999999999999999999999999999999996 66788999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhhhcchhhhhhHhhHhhh-hhccCCchHHHHHHHHHhhcCCcccc-cCcccccCCCChhHHHHHH
Q 002306 398 YQSSIRLPYIRSALQQYEGQFSSLIKERYLDPL-ESLTDDDHLNKFIALVETSVDLDQLE-NGEYMISSSYDTGLSALKN 475 (938)
Q Consensus 398 ~~~l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l-~~~~~~~~l~~l~~~i~~~id~~~~~-~~~~~I~~~~d~~Ld~lr~ 475 (938)
|.++...-.|.+.+++...+ ..+...+ .+.+ .++.++...++++||++.+. .+.+.|.+|+|++||+.|.
T Consensus 352 ~stv~~~~~i~~~~rslp~s------~~~~~~~~~~~~--~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~ 423 (849)
T KOG0221|consen 352 YSTVYSALGIRDACRSLPQS------IQLFRDIAQEFS--DDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRR 423 (849)
T ss_pred HHHHHHHHHHHHHHHhCccc------hhhhhHHHHHHH--HHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHH
Confidence 99999888888888764321 1111111 2223 67788889999999999874 4568899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHHHHHH
Q 002306 476 EQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGD 555 (938)
Q Consensus 476 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~ 555 (938)
.|.++...+.+..++....++.+.. ++.+.|.|..||++.|++-......+..+..|..+..+....+|.+...++|++
T Consensus 424 ~y~~lp~~Lt~vAr~e~~~L~~~~p-sv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E~l~~rnart~eLD~ 502 (849)
T KOG0221|consen 424 RYMGLPSFLTEVARKELENLDSRIP-SVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDA 502 (849)
T ss_pred HHccchHHHHHHHHHHHHhhCCCCC-ceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccceeEeecccHHhHHH
Confidence 9999999999999999888876533 699999999999999987543222211112255555566778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccce
Q 002306 556 QYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPC 635 (938)
Q Consensus 556 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~ 635 (938)
.++++.-++.+.|..|+-.|...+......+.++....++||+|+|||.+|.+ ++|.||.++++. -.+.|.+||||+
T Consensus 503 ~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~--~gy~~P~lv~e~-~il~I~ngrh~l 579 (849)
T KOG0221|consen 503 LLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAAD--YGYSRPRLVPEV-LILRIQNGRHPL 579 (849)
T ss_pred HhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCccccHH-HHHHHHcCChhH
Confidence 99999999999999999999999999999999999999999999999999976 899999999863 347899999999
Q ss_pred EeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhc
Q 002306 636 VEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 715 (938)
Q Consensus 636 ~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~ 715 (938)
+|... .+||||++..+.++|++.+|||||.||||.|||++|++++|||+||||||+.|+++++|+||+||+..+.+..+
T Consensus 580 ~e~~~-dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~esv~~g 658 (849)
T KOG0221|consen 580 MELCA-DTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLG 658 (849)
T ss_pred HHHHH-HhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhhhhhh
Confidence 98754 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC--eEEEEeCChHHHHHhhhcccccc
Q 002306 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA--PTLFATHFHELTALAHENANEFN 793 (938)
Q Consensus 716 ~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~--~~l~~TH~~el~~~~~~~~~~~~ 793 (938)
+||||....|++.+++.||.+||+|+||.|.||++.||.++..+++.|+.....+ +++++||+|++.+..--
T Consensus 659 qSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L------ 732 (849)
T KOG0221|consen 659 QSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLL------ 732 (849)
T ss_pred hhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccC------
Confidence 9999999999999999999999999999999999999999999999999873222 47778999999864322
Q ss_pred cccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 002306 794 TKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860 (938)
Q Consensus 794 ~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~~ 860 (938)
...+.++.+.|.+..+ +.+.++|+||+.+|.+..|||+++|+.+|+|++||.||++++..++...
T Consensus 733 -~~n~i~qfltm~vlr~-~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~sg~ 797 (849)
T KOG0221|consen 733 -PQNPIVQFLTMEVLRE-DGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIRSGK 797 (849)
T ss_pred -CcchhhhhhhHHHHHh-ccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHHcCC
Confidence 0034566676655432 2789999999999999999999999999999999999999999999764
No 9
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=9.6e-69 Score=650.25 Aligned_cols=507 Identities=21% Similarity=0.286 Sum_probs=433.7
Q ss_pred cHHHHHHcccccccCCCCccccHHH-HhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhc
Q 002306 294 DSAAMRALNVLESKTDANKNFSLFG-LMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLK 372 (938)
Q Consensus 294 D~~Tl~~LEI~~~~~~~~~~gSLf~-lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk 372 (938)
+..|++.||. + -+.. +-++ |.|++|+|+|++ ++|+.|+++|++||+.|+++.. .+.......|+
T Consensus 2 ~~~~~~~Le~-~---------~i~~~l~~~-~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~--~~~~~~~~~l~ 66 (782)
T PRK00409 2 QEKTLRVLEF-N---------KIKEQLKTF-AASELGKEKVLQ--LDPETDFEEVEELLEETDEAAK--LLRLKGLPPFE 66 (782)
T ss_pred ChhhHhhCCH-H---------HHHHHHHhH-cCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH--HHHhcCCCCCC
Confidence 4456666665 1 2333 4456 999999999999 6999999999999999999873 23333444689
Q ss_pred cCCcHHHHHHHHHhcc-CCHHHHHHHHHHHHhHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcC
Q 002306 373 RISDIERLMHNLEKRR-AGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451 (938)
Q Consensus 373 ~i~DleRll~ri~~~~-~~~~dl~~l~~~l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id 451 (938)
+++|++|++.|+..+. .++.|+..+.+++..+..+.+.+........ .+.+..+...+ ..+..+.+.|+.+||
T Consensus 67 ~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l~~~l~~~~~~~~----~~~L~~~~~~l--~~~~~l~~~i~~~id 140 (782)
T PRK00409 67 GVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLKRFIEDLEEEEE----LPILEEWVAKI--RTLPELEQEIHNCID 140 (782)
T ss_pred CCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc----hhHHHHHHHcC--cCcHHHHHHHHHHhC
Confidence 9999999999999764 8899999999999999998888864310000 12223333333 567788889999998
Q ss_pred CcccccCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccce--eeeecceeeEEEEEecCccccccccc
Q 002306 452 LDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKAL--KLDKGTQFGHVFRITKKEEPKIRKKL 529 (938)
Q Consensus 452 ~~~~~~~~~~I~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l--~~~~~~~~gy~i~v~~~~~~~~~~~~ 529 (938)
. ++.|++++|++|+.+|+.++++++++.+.+.++....+.. +.| ++...+..+|+++|+......+++.
T Consensus 141 ~------~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~--~~L~d~~it~r~~r~~i~vk~~~~~~~~g~- 211 (782)
T PRK00409 141 E------EGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQ--KYLQDTIITIRNDRYVLPVKAEYKHAIKGI- 211 (782)
T ss_pred C------CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccccceEEEECCEEEEEechhhhccCCCc-
Confidence 6 4689999999999999999999999999999988766532 112 3334445579999987666666632
Q ss_pred CccEEEEEEecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002306 530 TTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSC 609 (938)
Q Consensus 530 ~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~ 609 (938)
++..+.++.+.|+++.++.++++++.++..++.+.+.+++.+|...+.++.+.|..+.+++++|||++|+|.+|..
T Consensus 212 ---v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~- 287 (782)
T PRK00409 212 ---VHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKA- 287 (782)
T ss_pred ---eeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6677776777888888899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCccCCCCCccEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccc
Q 002306 610 PTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV 689 (938)
Q Consensus 610 ~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~v 689 (938)
++||+|.|++++ .+.++++|||+++. ..+||||+.++ +.+++++|||||||||||+||++|++++|||+|+||
T Consensus 288 -~~~~~P~~~~~~--~i~l~~~rHPll~~---~~~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~v 360 (782)
T PRK00409 288 -LKATFPLFNDEG--KIDLRQARHPLLDG---EKVVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPI 360 (782)
T ss_pred -CCCccceEcCCC--cEEEcCcCCceecc---CceECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCc
Confidence 789999998653 59999999999973 46999999997 457899999999999999999999999999999999
Q ss_pred cccc-ccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q 002306 690 PCDR-ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEI 768 (938)
Q Consensus 690 p~~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~ 768 (938)
||.. +.++++|+||+++|..+++..+.|+||++|++++.|++.+++++||||||||+||||.+|.+++.++++++.+ .
T Consensus 361 pa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~ 439 (782)
T PRK00409 361 PANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK-R 439 (782)
T ss_pred ccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-C
Confidence 9996 7899999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred CCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHH
Q 002306 769 RAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTL 848 (938)
Q Consensus 769 ~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~r 848 (938)
|+++|++||++++..++.. .+.+.+++|.+. .+.+.|+|++.+|++++|||++||+++|+|++||+|
T Consensus 440 ~~~vIitTH~~el~~~~~~---------~~~v~~~~~~~d----~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~ 506 (782)
T PRK00409 440 GAKIIATTHYKELKALMYN---------REGVENASVEFD----EETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEE 506 (782)
T ss_pred CCEEEEECChHHHHHHHhc---------CCCeEEEEEEEe----cCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHH
Confidence 9999999999999988777 788999999874 568999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 002306 849 AREKAAE 855 (938)
Q Consensus 849 A~~~~~~ 855 (938)
|++++..
T Consensus 507 A~~~~~~ 513 (782)
T PRK00409 507 AKKLIGE 513 (782)
T ss_pred HHHHHhh
Confidence 9998754
No 10
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=2e-63 Score=601.98 Aligned_cols=503 Identities=21% Similarity=0.259 Sum_probs=430.9
Q ss_pred cHHHHHHcccccccCCCCccccHHHHhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhcc
Q 002306 294 DSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKR 373 (938)
Q Consensus 294 D~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~ 373 (938)
+..|++.||. +. =+=.+.++ |.|++|++++++ +.|+.+.++|++|++.|+++..... ...|.+
T Consensus 2 ~~~~l~~Lef-~~--------i~~~l~~~-~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~-----~~~l~~ 64 (771)
T TIGR01069 2 REKDLIKLEF-DK--------VKENLLKQ-TFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN-----NVRFFG 64 (771)
T ss_pred ChhhHHhcCH-HH--------HHHHHHHH-cCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc-----cCCcCC
Confidence 4556666764 11 12246677 999999999999 8999999999999999999876432 336899
Q ss_pred CCcHHHHHHHHHhcc-CCHHH-HHHHHHHHHhHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcC
Q 002306 374 ISDIERLMHNLEKRR-AGLQQ-IVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVD 451 (938)
Q Consensus 374 i~DleRll~ri~~~~-~~~~d-l~~l~~~l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id 451 (938)
++|+++++.|+..+. +++.+ +..++.++..+..+...+... ..+ +.+..+...+ ..+..+...|+++||
T Consensus 65 ~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~~~l~~~-~~~------~~L~~~~~~l--~~~~~l~~~i~~~id 135 (771)
T TIGR01069 65 FEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLKVLSEHV-LDL------EILFHLRLNL--ITLPPLENDIIACID 135 (771)
T ss_pred CccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHHHHHhcc-ccc------hHHHHHHhcC--CCcHHHHHHHHHHhC
Confidence 999999999999865 78877 999999999988888877642 111 1122232223 567788889999998
Q ss_pred CcccccCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---cccceeeeecceeeEEEEEecCcccccccc
Q 002306 452 LDQLENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLP---VDKALKLDKGTQFGHVFRITKKEEPKIRKK 528 (938)
Q Consensus 452 ~~~~~~~~~~I~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~---~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~ 528 (938)
. ++.|++++|++|+.+|+.++.+++++.+.++++....+.. ++..++++++ +|++.|+......+++.
T Consensus 136 ~------~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r~~---r~vipvk~~~~~~i~g~ 206 (771)
T TIGR01069 136 D------DGKVKDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNG---RYVLPLKSGFKGKIKGI 206 (771)
T ss_pred C------CCEECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEECC---EEEEEeeHHHhhcCCCe
Confidence 5 4689999999999999999999999999999887655431 2335666654 59999987666666632
Q ss_pred cCccEEEEEEecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002306 529 LTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASS 608 (938)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~ 608 (938)
++..++++.+.|+++.++.+||+++.++..++.+.+.+|+.+|...+.++.+.|..+.+++++||+++|+|.+|..
T Consensus 207 ----v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~ 282 (771)
T TIGR01069 207 ----VHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKA 282 (771)
T ss_pred ----EEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666667777788899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCccCCCCCccEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccc
Q 002306 609 CPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF 688 (938)
Q Consensus 609 ~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~ 688 (938)
.+||+|.+.+.+ .+.++++|||+++. ..+||||+.++. +.++++||||||||||||||+++++++|+|.|++
T Consensus 283 --~~~~~P~~~~~~--~i~l~~~rhPll~~---~~~vp~di~l~~-~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~ 354 (771)
T TIGR01069 283 --VKGEFPMPSFTG--KIILENARHPLLKE---PKVVPFTLNLKF-EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIP 354 (771)
T ss_pred --CCCeeceecCCC--CEEEccccCceecC---CceEeceeEeCC-CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCC
Confidence 789999987653 69999999999973 359999999963 3479999999999999999999999999999999
Q ss_pred ccccc-ccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002306 689 VPCDR-ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (938)
Q Consensus 689 vp~~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (938)
||+.. ..+++++++++++|..+++..+.|+|+.+|.+++.|+..+++++|||+||||+||||.+|.++++++++++.+
T Consensus 355 Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~- 433 (771)
T TIGR01069 355 IPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK- 433 (771)
T ss_pred ccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-
Confidence 99987 5799999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHH
Q 002306 768 IRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVT 847 (938)
Q Consensus 768 ~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~ 847 (938)
.|+++|++||++++..++.. .+++.|++|.+. .+++.|+|+|.+|++++|||++||+++|+|++||+
T Consensus 434 ~g~~viitTH~~eL~~~~~~---------~~~v~~~~~~~d----~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~ 500 (771)
T TIGR01069 434 QNAQVLITTHYKELKALMYN---------NEGVENASVLFD----EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIE 500 (771)
T ss_pred cCCEEEEECChHHHHHHhcC---------CCCeEEeEEEEc----CCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHH
Confidence 79999999999999888776 789999999875 46899999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 002306 848 LAREKAAELE 857 (938)
Q Consensus 848 rA~~~~~~le 857 (938)
||++++...+
T Consensus 501 ~A~~~~~~~~ 510 (771)
T TIGR01069 501 QAKTFYGEFK 510 (771)
T ss_pred HHHHHHHhhH
Confidence 9999886544
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=6.5e-52 Score=437.71 Aligned_cols=233 Identities=43% Similarity=0.742 Sum_probs=200.6
Q ss_pred CCCCccCCCCCccEEEEccccceEeec-cCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccccc
Q 002306 613 YTRPDINPPDVGDIILEGSRHPCVEAQ-DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPC 691 (938)
Q Consensus 613 ~~rP~~~~~~~~~l~i~~~rhp~~~~~-~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~ 691 (938)
||||+|+++. .+.+++||||+++.. ....+||||+.++.+..++++||||||||||||||+||++++|||+|+||||
T Consensus 1 y~~P~~~~~~--~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA 78 (235)
T PF00488_consen 1 YCRPKISEEK--SLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPA 78 (235)
T ss_dssp EB-EEEESTT--EEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSS
T ss_pred CcccEEcCCC--CEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeee
Confidence 8999999864 699999999999976 3567999999998655589999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002306 692 DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (938)
Q Consensus 692 ~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (938)
+.+.++++|+|+++++..|++..+.|+|+.||++++.|++.+++++|||+||+|+||++.+|.+++++++++|.++.++.
T Consensus 79 ~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~ 158 (235)
T PF00488_consen 79 ESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCF 158 (235)
T ss_dssp SEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-E
T ss_pred cccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999745899
Q ss_pred EEEEeCChHHHHHhhhcccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHH
Q 002306 772 TLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLARE 851 (938)
Q Consensus 772 ~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~ 851 (938)
++++||++++.++... .+.+.++||.+... ++.++|+||+.+|+|++|||+++|+++|+|++||+||++
T Consensus 159 ~i~~TH~~~l~~~~~~---------~~~v~~~~~~~~~~--~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~ 227 (235)
T PF00488_consen 159 VIIATHFHELAELLER---------NPNVQNYHMEVEED--NDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKE 227 (235)
T ss_dssp EEEEES-GGGGGHHHH---------STTEEEEEEEEEEE--TTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHH
T ss_pred EEEEeccchhHHHhhh---------Cccccccceeeeee--ccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHH
Confidence 9999999999988777 78899999999876 789999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 002306 852 KAAELED 858 (938)
Q Consensus 852 ~~~~le~ 858 (938)
++++|++
T Consensus 228 i~~~l~~ 234 (235)
T PF00488_consen 228 ILKQLEE 234 (235)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999985
No 12
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=5.1e-47 Score=394.66 Aligned_cols=213 Identities=46% Similarity=0.726 Sum_probs=199.8
Q ss_pred EEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcC
Q 002306 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (938)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~ 707 (938)
++++|||+++...+..+||||++|+.+++++++||||||+|||||+|+++++++|||+|+||||+.++++++|+||++++
T Consensus 2 ~~~~rHPll~~~~~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~ 81 (218)
T cd03286 2 FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIG 81 (218)
T ss_pred cccccCCEEecccCCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecC
Confidence 67899999986555679999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..|++..+.|+|+.||++++.|++.+++++|+|||||++||+|.+|.++++++++++.+..++++|++||++++......
T Consensus 82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~ 161 (218)
T cd03286 82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHE 161 (218)
T ss_pred cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999987338999999999999887666
Q ss_pred cccccccccccceeEEEEEEEEEcc----CCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHH
Q 002306 788 NANEFNTKQMVGVANYHVSAHIDST----SRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 849 (938)
Q Consensus 788 ~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA 849 (938)
.+++.++||.+..+++ .++++|+|||.+|+|++|||+++|+++|+|++||+||
T Consensus 162 ---------~~~v~~~~m~~~~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 162 ---------HGGVRLGHMACAVKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred ---------CcceEEEEEEEEEeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 7899999999887631 2789999999999999999999999999999999997
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=6.7e-46 Score=389.65 Aligned_cols=221 Identities=72% Similarity=1.111 Sum_probs=207.7
Q ss_pred EEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcC
Q 002306 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (938)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~ 707 (938)
|+++|||+++...+..+||||++++..++++++||||||||||||||++|.+++|+|+|+||||..+.+++++++++++|
T Consensus 2 ~~~~~hpll~~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~ 81 (222)
T cd03285 2 LKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVG 81 (222)
T ss_pred ccccCCCEEeccCCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeec
Confidence 67899999997656679999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..|.+..+.|+|+.||.+++.+++.+++|+||||||||+||++.|+.++++++++++.++.|+++|++||++++.+++++
T Consensus 82 l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~ 161 (222)
T cd03285 82 ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161 (222)
T ss_pred cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999876458999999999999999998
Q ss_pred cccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhh
Q 002306 788 NANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857 (938)
Q Consensus 788 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le 857 (938)
.+.+.+++|.+...+.++++.|+|||.+|+|+.|||+++|+++|+|++||+||++++++++
T Consensus 162 ---------~~~i~~g~~~~~~~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~~ 222 (222)
T cd03285 162 ---------VPNVKNLHVTALTDDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALELE 222 (222)
T ss_pred ---------CCCeEEEEEEEEEeCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhcC
Confidence 8899999998877643488999999999999999999999999999999999999999874
No 14
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.1e-45 Score=385.81 Aligned_cols=216 Identities=44% Similarity=0.718 Sum_probs=200.0
Q ss_pred EEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHh
Q 002306 626 IILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFAR 705 (938)
Q Consensus 626 l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~ 705 (938)
+.|+++|||+++......||||++++....|++++|+||||+|||||||+++++.+++|+|+|+|+..+.++++++||++
T Consensus 1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~ 80 (222)
T cd03287 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR 80 (222)
T ss_pred CeeecccCCEEeccCCCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE
Confidence 46899999999976556799999999988899999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHh
Q 002306 706 VGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (938)
Q Consensus 706 ~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~ 785 (938)
++..|++..+.|+|+.||++++.+++.+++++|+|+||||+|||+.++.++++++++++.+..++++|++||++++.++.
T Consensus 81 ~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 81 MGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred ecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999974489999999999999887
Q ss_pred hhcccccccccccceeEEEEEEEEEc------cCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHH
Q 002306 786 HENANEFNTKQMVGVANYHVSAHIDS------TSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLA 849 (938)
Q Consensus 786 ~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA 849 (938)
... .+.+.++||.+.... ++++++|+|||.+|+|+.|||++||+++|+|++||+||
T Consensus 161 ~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 161 RRF--------EGSIRNYHMSYLESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred Hhc--------ccCeEEEEEEEEEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 651 246999999876531 25689999999999999999999999999999999997
No 15
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=2.1e-41 Score=376.50 Aligned_cols=306 Identities=37% Similarity=0.569 Sum_probs=259.7
Q ss_pred cccHHHHhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCcHHHHHHHHHhccCCHH
Q 002306 313 NFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQ 392 (938)
Q Consensus 313 ~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~ 392 (938)
+||||++||+ |+|++|+|+|++|+++|++|.++|++|||+|++|.++..++..++..|++++|++|++.|+..+++++.
T Consensus 1 ~~sL~~~l~~-~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~~~~~ 79 (308)
T smart00533 1 KGSLFELLNH-TKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGRASPR 79 (308)
T ss_pred CCCHHHHHcc-CCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCCCCHH
Confidence 3799999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCcccc-cCcccccCCCChhHH
Q 002306 393 QIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLE-NGEYMISSSYDTGLS 471 (938)
Q Consensus 393 dl~~l~~~l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~-~~~~~I~~~~d~~Ld 471 (938)
||..+++++..+..+.+.|........ ......+.. +....+..+.+...+.+... .+++.|++|+|++||
T Consensus 80 el~~l~~~l~~~~~l~~~l~~~~~~~~----~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld 151 (308)
T smart00533 80 DLLRLYDSLEGLKEIRQLLESLDGPLL----GLLLKVILE----PLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELD 151 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHH----HHHHHhhcc----chHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHH
Confidence 999999999999999988865321110 011111100 11111222222222333222 234789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHH
Q 002306 472 ALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLK 551 (938)
Q Consensus 472 ~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 551 (938)
++|+.++++++.+++..+++.++++.+ .+++.|.+..||+|+|+.+....+|+ . |+..+++++++||+|+++.
T Consensus 152 ~lr~~~~~l~~~l~~~~~~~~~~~~~~---~l~~~~~~~~g~~i~v~~~~~~~~~~--~--~~~~s~s~~~~~~~~~~~~ 224 (308)
T smart00533 152 ELREKLEELEEELEELLKKEREELGID---SLKLGYNKVHGYYIEVTKSEAKKVPK--D--FIRRSSLKNTERFTTPELK 224 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEeEeccEEEEEEecchhhccCCh--H--HHHHhhhcccceeeCHHHH
Confidence 999999999999999999999888764 78889999999999999877667763 3 8889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEcc
Q 002306 552 KLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGS 631 (938)
Q Consensus 552 ~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~ 631 (938)
+|++++.++..++.+.+..+++++.+.+.++.+.|..+++++|+|||++|+|.+|.. ++||||+|++++ .+.+++|
T Consensus 225 ~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~--~~~~~P~i~~~~--~l~i~~~ 300 (308)
T smart00533 225 ELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAE--GNYVRPEFVDSG--ELEIKNG 300 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCcCCeeCCCC--CEEEeeC
Confidence 999999999999999999999999999999999999999999999999999999986 789999999753 5999999
Q ss_pred ccceEee
Q 002306 632 RHPCVEA 638 (938)
Q Consensus 632 rhp~~~~ 638 (938)
|||+++.
T Consensus 301 rHPlle~ 307 (308)
T smart00533 301 RHPVLEL 307 (308)
T ss_pred CCCcccC
Confidence 9999973
No 16
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=1.3e-42 Score=363.49 Aligned_cols=214 Identities=52% Similarity=0.805 Sum_probs=200.5
Q ss_pred EEccccceEeecc-CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhc
Q 002306 628 LEGSRHPCVEAQD-WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARV 706 (938)
Q Consensus 628 i~~~rhp~~~~~~-~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~ 706 (938)
|+++|||+++... ...+||||++++.+. ++++|+||||||||||||+++++.+++|+|+++|+..+.+++++++++++
T Consensus 2 i~~~~hp~~~~~~~~~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~ 80 (216)
T cd03284 2 IEGGRHPVVEQVLDNEPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRI 80 (216)
T ss_pred cccccCCEEeeccCCCceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccC
Confidence 7889999999754 356999999998654 89999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhh
Q 002306 707 GAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (938)
Q Consensus 707 ~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~ 786 (938)
+..|++..+.|+|+.|+.+++.++..+++++++|||||++||++.|+.++++++++++.+..++++|++||++++.++++
T Consensus 81 ~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~ 160 (216)
T cd03284 81 GASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEG 160 (216)
T ss_pred CchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999899999998733899999999999999998
Q ss_pred hcccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHH
Q 002306 787 ENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKA 853 (938)
Q Consensus 787 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~ 853 (938)
. .+.+.+++|.+..+ +++++|+|++.+|.++.|||+++|+++|+|++||+||++++
T Consensus 161 ~---------~~~v~~~~~~~~~~--~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~~ 216 (216)
T cd03284 161 K---------LPRVKNFHVAVKEK--GGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREIL 216 (216)
T ss_pred c---------CCCeEEEEEEEEee--CCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHhC
Confidence 8 88999999988766 78899999999999999999999999999999999999863
No 17
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-41 Score=401.39 Aligned_cols=480 Identities=24% Similarity=0.300 Sum_probs=399.5
Q ss_pred HhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCcHHHHHHHHHhc-cCCHHHHHHH
Q 002306 319 LMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKR-RAGLQQIVKL 397 (938)
Q Consensus 319 lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~-~~~~~dl~~l 397 (938)
+..+ +.|+.|+..|+. +.|..+.+.|++.++-++++......... -.+.++.|+.-.+.|+..+ ...+.++..+
T Consensus 16 ~~~~-~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~~g~--~~~~~l~~i~~~l~~~e~g~~l~~~el~~i 90 (753)
T COG1193 16 LASY-AQSSLGLEELKN--LKPRTDLELIEEELSETAEALDILEDEGL--PPLGGLNDVSEALGRLEKGGRLHVEELLEI 90 (753)
T ss_pred HHHh-ccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhccCC--CCchhhhhhHHHHHHHhhcccCCHHHHHHH
Confidence 5566 999999999999 99999999999999999987653221000 1467788999999988854 6788899988
Q ss_pred HHHHHhHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCcccccCcccccCCCChhHHHHHHHH
Q 002306 398 YQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQ 477 (938)
Q Consensus 398 ~~~l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~~~~~~I~~~~d~~Ld~lr~~~ 477 (938)
...+.....+...+..... +. ....... ..+.++...|..++|. ++.|.+..++.|+.+|...
T Consensus 91 ~~~l~~~~~lkr~~~~~e~-----~~----~~~~~~~--~~~~~l~~~i~~~id~------~g~i~d~as~~l~~ir~~l 153 (753)
T COG1193 91 SDFLRGFRALKRAIKKLER-----IK----RTLALAL--IELSDLELEINIPIDD------DGLIKDRASFELDAIRRQL 153 (753)
T ss_pred HHHHHHHHHHHHHHHHhhh-----HH----HHHHHhh--hcchHHHHHHhhhhcc------cccccccccHHHHHHHhhh
Confidence 8888877777766665321 00 1111122 5666777777777764 5678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc-CC-CcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHHHHHH
Q 002306 478 ESLERQIHSLHKQTASDL-DL-PVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGD 555 (938)
Q Consensus 478 ~~~~~~l~~~~~~~~~~~-~~-~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~ 555 (938)
......+.+.++.+.+.- .. -++..+..+. -.|++.+.......+++. .+..+..+.+.+..+..+..+++
T Consensus 154 r~~~~~i~~~l~~~~~~~~~~~L~e~~v~~r~---~r~vlpvk~~fk~~i~gi----v~d~sssg~tl~ieP~~vv~l~n 226 (753)
T COG1193 154 RDLEEEIRDKLESLIRSKEAKYLQDRIVTTRD---GREVLPVKAEFKGAIKGI----VHDTSSSGATLYIEPRSVVKLNN 226 (753)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhhhceEeccC---CeEEeHHHHHhhhhcCce----EeecccccCeeeecchHHHhhcc
Confidence 888888777766665433 11 0122223322 248888865555556542 45666667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccce
Q 002306 556 QYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPC 635 (938)
Q Consensus 556 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~ 635 (938)
++..+..+.......+++++...+.++.+.+..+...++++|++.+-+.++.. ..+++|.+.+++ .+.+.+++||+
T Consensus 227 ~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~--~~~v~P~~~~~~--~l~l~~~~HPl 302 (753)
T COG1193 227 ELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKA--LKGVKPDFSNDG--VLELLDARHPL 302 (753)
T ss_pred HhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHh--hccCCCccCCCc--eEEeccccCcc
Confidence 99999999999999999999999999999999999999999999999999986 789999999643 69999999999
Q ss_pred EeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccc-cchHHHHHHHhcCCchhhhh
Q 002306 636 VEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRA-SISVRDCIFARVGAGDCQLR 714 (938)
Q Consensus 636 ~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~-~~~~~d~i~~~~~~~d~~~~ 714 (938)
+.. .||+++.+.. .-..++|||||++|||+.|+++|+..+|+|.|.++|+... +++.|+.+|..+|..+++..
T Consensus 303 l~~-----~v~~~i~~~~-e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeq 376 (753)
T COG1193 303 LKE-----DVPNDLELGE-ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQ 376 (753)
T ss_pred Ccc-----cccccccccc-ccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHHH
Confidence 983 3899999974 3468999999999999999999999999999999999987 89999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhccccccc
Q 002306 715 GVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNT 794 (938)
Q Consensus 715 ~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~ 794 (938)
..|||+++|..++.++..+. +|+++||.|+||||.+|.+++.++++++.+ .++.++.+||+.++..++..
T Consensus 377 sLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~-~~~~~~~tTH~~elk~~~~~------- 446 (753)
T COG1193 377 SLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLE-KPAKIVATTHYRELKALAAE------- 446 (753)
T ss_pred HHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHh-cccceehHhhHHHHHHHHhc-------
Confidence 99999999999999996544 999999999999999999999999999998 79999999999999988877
Q ss_pred ccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHH
Q 002306 795 KQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKA 853 (938)
Q Consensus 795 ~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~ 853 (938)
.+++.|..|.+. .+++.++|++..|+.++||++++|...|+|..+|++|+...
T Consensus 447 --~~~v~nas~~fd----~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~ 499 (753)
T COG1193 447 --REGVENASMEFD----AETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEF 499 (753)
T ss_pred --chhhhchhhhhh----HHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhc
Confidence 789999999876 56899999999999999999999999999999999998654
No 18
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.2e-40 Score=342.68 Aligned_cols=201 Identities=41% Similarity=0.650 Sum_probs=187.9
Q ss_pred EEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcC
Q 002306 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (938)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~ 707 (938)
|+++|||+++.. ..++++||++++...|++++|+|||||||||+||+++++++|+|+|+||||..+.++++++|+++++
T Consensus 2 i~~~~hpll~~~-~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~ 80 (204)
T cd03282 2 IRDSRHPILDRD-KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLS 80 (204)
T ss_pred cccccCCeEecc-CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecC
Confidence 678999999863 3579999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..|++..+.|+|+.||+++..+++.+++++|+|||||++|||+.++.++++++++++.+ .|+++|++||++++++....
T Consensus 81 ~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 81 NDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred CccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999987 69999999999999987776
Q ss_pred cccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCC-CCchHHHHHHcC
Q 002306 788 NANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACD-QSFGIHVAEFAN 840 (938)
Q Consensus 788 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~-~S~gi~vA~~ag 840 (938)
.+.+.++||.....+ ++++.|+||+.+|+|. .||||++||+..
T Consensus 160 ---------~~~v~~~~~~~~~~~-~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 160 ---------KSCVVHLHMKAQSIN-SNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred ---------CCCeEEEEEEEEEcC-CCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 688999999887643 4788999999999999 999999999864
No 19
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2e-40 Score=346.18 Aligned_cols=204 Identities=38% Similarity=0.649 Sum_probs=185.3
Q ss_pred EEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcC
Q 002306 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (938)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~ 707 (938)
|+++|||+++.. ...+||||+.++.+.+++++||||||+|||||||+++.+.+++|.|+++|+..+.++++|+++++++
T Consensus 2 i~~~rHPll~~~-~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~ 80 (213)
T cd03281 2 IQGGRHPLLELF-VDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMS 80 (213)
T ss_pred cccccCCEEecc-CCceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeC
Confidence 788999999863 2469999999975444899999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc--CCCeEEEEeCChHHHHHh
Q 002306 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE--IRAPTLFATHFHELTALA 785 (938)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~--~~~~~l~~TH~~el~~~~ 785 (938)
..+++..+.|+|+.||++++.++..+++++|+|||||++|||+.++.++++++++++.+. .++++|++||++++....
T Consensus 81 ~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 81 SRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999763 135899999999998766
Q ss_pred h--hcccccccccccceeEEEEEEEEEcc----CCceeeeeeecCCCCCCCchHHHHHHcCC
Q 002306 786 H--ENANEFNTKQMVGVANYHVSAHIDST----SRKLTMLYKVEPGACDQSFGIHVAEFANF 841 (938)
Q Consensus 786 ~--~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~ykl~~G~~~~S~gi~vA~~ag~ 841 (938)
. . .+.+.++||.+..+++ .++++|+|||.+|+|++|||++||+++|+
T Consensus 161 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 161 LLPE---------RLKIKFLTMEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred hhcc---------CCceEEEEEEEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 4 3 6789999999877632 47899999999999999999999999996
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1e-38 Score=327.08 Aligned_cols=184 Identities=57% Similarity=0.888 Sum_probs=174.5
Q ss_pred EEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCc
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRS 737 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~s 737 (938)
+++||||||||||||||+++++.++||+|+|||+..+.++++|+++++++..+++..+.|+|+.||++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEEEEEccCCcee
Q 002306 738 LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLT 817 (938)
Q Consensus 738 lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 817 (938)
++|+|||++|||+.++.++.+++++++.++.++++|++||++++.++++. .++|.++||.+..+ ++++.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~---------~~~v~~~~~~~~~~--~~~~~ 149 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE---------HPGVRNLHMSADEE--TENLT 149 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc---------CccceEEEEEEEEe--cCcee
Confidence 99999999999999999998999999876348999999999999999887 78899999998876 67899
Q ss_pred eeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHH
Q 002306 818 MLYKVEPGACDQSFGIHVAEFANFPESVVTLAREK 852 (938)
Q Consensus 818 ~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~ 852 (938)
|+|++.+|+++.|||+++|+++|+|++||+||+++
T Consensus 150 ~~Y~l~~G~~~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 150 FLYKLTPGVAGKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred EEEEEeECCCCCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999886
No 21
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=3.5e-37 Score=318.41 Aligned_cols=196 Identities=29% Similarity=0.405 Sum_probs=181.1
Q ss_pred EEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcC
Q 002306 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVG 707 (938)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~ 707 (938)
++++|||+++. .++|+||++++ .|++++||||||||||||||++++.+++++.|+++|+..+.++ .+.+|.+++
T Consensus 2 ~~~~~hp~~~~---~~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~ 75 (199)
T cd03283 2 AKNLGHPLIGR---EKRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIR 75 (199)
T ss_pred CcccCCCeecC---CCeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEecc
Confidence 67899999983 36999999996 4699999999999999999999999999999999999988888 788999999
Q ss_pred CchhhhhcccchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHh
Q 002306 708 AGDCQLRGVSTFMQEMLETASILKGAT--DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (938)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~a~--~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~ 785 (938)
..|++..+.|.|..++.++..++..+. +|+++|+|||++|||+.++..+.+++++.+.+ .+.++|++||++++....
T Consensus 76 ~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 76 VSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLL 154 (199)
T ss_pred chhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhh
Confidence 999999999999999999999999988 99999999999999999999887888898876 689999999999998877
Q ss_pred hhcccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCC
Q 002306 786 HENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841 (938)
Q Consensus 786 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~ 841 (938)
+. .+++.++||.+..+ +++++|+||+.+|+|+.|||+++|+++|+
T Consensus 155 ~~---------~~~v~~~~~~~~~~--~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 155 DL---------DSAVRNYHFREDID--DNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred hc---------CCCeEEEEEEEEEE--CCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 66 78999999999887 68999999999999999999999999996
No 22
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=1.8e-36 Score=314.79 Aligned_cols=197 Identities=35% Similarity=0.485 Sum_probs=180.0
Q ss_pred EEccccceEeeccCcccccCCccccCCCC-eEEEEEecCCCCchhhhhhhhhhHhhhhccccccccc-ccchHHHHHHHh
Q 002306 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKS-WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR-ASISVRDCIFAR 705 (938)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~-~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~-~~~~~~d~i~~~ 705 (938)
|+++|||+++.. ...++++++++. .+ ++++||||||||||||||+++.+.+++|.|+++|+.. ..++.+++++++
T Consensus 2 ~~~~~hp~~~~~-~~~~~~~~~~i~--~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~ 78 (200)
T cd03280 2 LREARHPLLPLQ-GEKVVPLDIQLG--ENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFAD 78 (200)
T ss_pred CcccCCCEEecc-CCceEcceEEEC--CCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEe
Confidence 789999999965 557999999995 44 6899999999999999999999999999999999986 567889999999
Q ss_pred cCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHh
Q 002306 706 VGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (938)
Q Consensus 706 ~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~ 785 (938)
++..+.+..+.|+|+.||+++..+++.+++|+++|+|||++|||+.++..+...+++.+.+ .++++|++||++++..++
T Consensus 79 lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~~l~~~~ 157 (200)
T cd03280 79 IGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYGELKAYA 157 (200)
T ss_pred cCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHH
Confidence 9999999999999999999999999989999999999999999999999997788888876 589999999999998999
Q ss_pred hhcccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCC
Q 002306 786 HENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841 (938)
Q Consensus 786 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~ 841 (938)
++ ...+.++++.++ .+++.|+||+++|+|++|||+++|+.+|+
T Consensus 158 d~---------~~~l~~g~l~~~----~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 158 YK---------REGVENASMEFD----PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred hc---------CCCeEEEEEEEe----cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 88 778889988765 46799999999999999999999999996
No 23
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=7.5e-36 Score=310.71 Aligned_cols=200 Identities=50% Similarity=0.813 Sum_probs=185.4
Q ss_pred EEccccceEeec-cCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhc
Q 002306 628 LEGSRHPCVEAQ-DWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARV 706 (938)
Q Consensus 628 i~~~rhp~~~~~-~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~ 706 (938)
++++|||+++.. ....+||||++++ .|++++||||||||||||||+++...+++|.|+++|+..+.+++++++++++
T Consensus 2 ~~~~~~p~l~~~~~~~~~~~~~~~l~--~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~ 79 (202)
T cd03243 2 IKGGRHPVLLALTKGETFVPNDINLG--SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRI 79 (202)
T ss_pred cccccCCEEeccccCCceEeeeEEEc--CCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEe
Confidence 688999999864 3457999999996 5689999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhh
Q 002306 707 GAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (938)
Q Consensus 707 ~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~ 786 (938)
+..+.+..+.|+|+.|++++..++..+.+|+++|+|||++|||+.++..+.+++++.+.+ .++++|++||++++...++
T Consensus 80 ~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 80 GAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998888998876 5899999999999999888
Q ss_pred hcccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCC
Q 002306 787 ENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANF 841 (938)
Q Consensus 787 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~ 841 (938)
+ .+.+.+++|....+ .+++.|+||+.+|.+++|||+.+|+..|+
T Consensus 159 ~---------~~~l~~~~~~~~~~--~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 159 Q---------VPGVKNLHMEELIT--TGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred c---------CCCeEEEEEEEEec--CCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 7 78899999988765 67899999999999999999999999986
No 24
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.95 E-value=1.5e-28 Score=230.33 Aligned_cols=102 Identities=24% Similarity=0.383 Sum_probs=86.2
Q ss_pred ccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCCCCCccccccCHhHHHHHHHHHHhhcC
Q 002306 19 RGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLLLERT 97 (938)
Q Consensus 19 ~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~~~~~pm~gvp~~~~~~yl~~Lv~~~G 97 (938)
|||++||+++|++ ||+|+|||+|||||+|++||+.+|+.|+++++..+ .+ ...++||||||.++++.|+++|| .+|
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~-~~-~~~~~~~~gfp~~~l~~~l~~Ll-~~G 77 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRK-TG-GGKSVPMAGFPKSQLDKYLKKLL-EAG 77 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEE-CS-SSECEEEEEEEGGGHHHHHHHHH-HTT
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeecc-cc-ccccccEecccHHHHHHHHHHHH-HcC
Confidence 8999999999999 99999999999999999999999999999865322 11 22339999999999999999998 889
Q ss_pred CeEEEEEeccC--------CcceeEEecCCCCccc
Q 002306 98 DHTLELYEGSG--------SNWRLVKSGTPGNLGS 124 (938)
Q Consensus 98 ~~kVaI~eQ~e--------~~R~v~riiTPGt~~~ 124 (938)
|||+||||.+ .+|+|++|+||||+++
T Consensus 78 -~~V~i~~q~~~~~~~~~~~~R~v~~i~TpGt~~~ 111 (113)
T PF01624_consen 78 -YRVAIYEQVETPSETKGLIEREVTRIYTPGTLID 111 (113)
T ss_dssp --EEEEEEE-S-HHHHSSS--EEEEEEEBTTS-TS
T ss_pred -CEEEEEEecCCccccCCCccEEEEEEECcCeecC
Confidence 9999999997 3799999999999853
No 25
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.95 E-value=2.8e-26 Score=239.17 Aligned_cols=202 Identities=32% Similarity=0.536 Sum_probs=159.4
Q ss_pred HHHHHHcccccccCCCCccccHHHHhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccC
Q 002306 295 SAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRI 374 (938)
Q Consensus 295 ~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i 374 (938)
++|+++|||+++..+++++||||++||+ |+|++|+|+|++||++|++|+++|++||++|++|.+|+.++..++..|+++
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~-t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~~l~~~ 79 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNR-TSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRSILKKI 79 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH----SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhc-CCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcc
Confidence 5899999999988788888999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhccCCHHHHHHHHHHHHhHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCcc
Q 002306 375 SDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQ 454 (938)
Q Consensus 375 ~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~ 454 (938)
+|+++++.|+..+++++++|..+++++..+..+.+.+...-... +.+..+.+.+ +++..+.+.|++++|.+.
T Consensus 80 ~di~~~l~~l~~~~~~~~~~~~l~~~l~~~~~i~~~~~~~~~~~------~~L~~l~~~l--~~~~~l~~~i~~~id~~~ 151 (204)
T PF05192_consen 80 PDIERILKRLRSGRASPQDLLKLYKTLRSIIEIKKLLSERLESS------PLLRKLLSSL--PDFSELLDEIESTIDEDK 151 (204)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCTSSST------HHHHHHHHHH--CSHHHHHHHHHHHBHTS-
T ss_pred chHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhcccH------HHHHHHHHhc--ccHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999888877754321100 1122222222 345666677777776542
Q ss_pred c--ccCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCcc
Q 002306 455 L--ENGEYMISSSYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQ 532 (938)
Q Consensus 455 ~--~~~~~~I~~~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~ 532 (938)
. .+.+..|++
T Consensus 152 ~~~~~~~~~I~~-------------------------------------------------------------------- 163 (204)
T PF05192_consen 152 SLAIREQDIIRD-------------------------------------------------------------------- 163 (204)
T ss_dssp CCHCTTSSSBST--------------------------------------------------------------------
T ss_pred HHHHhcccHHHH--------------------------------------------------------------------
Confidence 1 111112222
Q ss_pred EEEEEEecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 002306 533 FIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFAD 604 (938)
Q Consensus 533 ~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~ 604 (938)
+...+.+++.+|.+.+.++.+.|..+.+++|+|||++|||+
T Consensus 164 -------------------------------~~~~~~~i~~~L~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 164 -------------------------------INDEEQRILRELTNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66678889999999999999999999999999999999995
No 26
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.85 E-value=3.7e-21 Score=192.97 Aligned_cols=136 Identities=40% Similarity=0.548 Sum_probs=115.5
Q ss_pred EEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh----------cccccccccccch
Q 002306 628 LEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----------VGSFVPCDRASIS 697 (938)
Q Consensus 628 i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq----------~g~~vp~~~~~~~ 697 (938)
+..++||.+ ++||++.+. ++++.+|||||||||||+||+++.+..+++ .|+++|+....+
T Consensus 2 i~~~~~~~~-------~~~~~i~~~--~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 71 (162)
T cd03227 2 IVLGRFPSY-------FVPNDVTFG--EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL- 71 (162)
T ss_pred ceeCCCCEE-------EeccEEecC--CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-
Confidence 567889986 678999985 347999999999999999999999999998 999999988665
Q ss_pred HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEE
Q 002306 698 VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT--DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775 (938)
Q Consensus 698 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~--~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~ 775 (938)
++++++ .|..+.++..++.++..++ +|+++|+|||++|||+.++..++.++.+++.+ ++++|++
T Consensus 72 ----i~~~~~--------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~~~vii~ 137 (162)
T cd03227 72 ----IFTRLQ--------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIVI 137 (162)
T ss_pred ----ehheee--------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEE
Confidence 555544 5666788888888887655 89999999999999999999998888777653 8999999
Q ss_pred eCChHHHHHhhh
Q 002306 776 THFHELTALAHE 787 (938)
Q Consensus 776 TH~~el~~~~~~ 787 (938)
||++++...+++
T Consensus 138 TH~~~~~~~~d~ 149 (162)
T cd03227 138 THLPELAELADK 149 (162)
T ss_pred cCCHHHHHhhhh
Confidence 999999887766
No 27
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.84 E-value=8.1e-21 Score=199.55 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=125.7
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH--------------------hhhhcccccccccc-------
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------LMAQVGSFVPCDRA------- 694 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--------------------~laq~g~~vp~~~~------- 694 (938)
+.++.++++|++.+|++++|+||||||||||||+++++. -+|+.-+|||+...
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 346666999999999999999999999999999997642 13444567776531
Q ss_pred ---------------------cchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002306 695 ---------------------SISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 695 ---------------------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~ 752 (938)
....+++.+..+|..+...+...++|++.+|.+.|.++ |.+++++||||||+.||...
T Consensus 94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 01134556888899988899999999888887777665 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
...+ ..++..+.++.|.++|+++||.+++ ++|++ ..-++++.+.+.
T Consensus 174 Q~ev-l~ll~~l~~~~~~tvv~vlHDlN~A~ryad~---------~i~lk~G~i~a~ 220 (258)
T COG1120 174 QIEV-LELLRDLNREKGLTVVMVLHDLNLAARYADH---------LILLKDGKIVAQ 220 (258)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCE---------EEEEECCeEEee
Confidence 9999 8888999876799999999999887 57877 556666666554
No 28
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.1e-20 Score=197.38 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=114.4
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-----------------hcccccccccc-------------
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------QVGSFVPCDRA------------- 694 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-----------------q~g~~vp~~~~------------- 694 (938)
+..+++|++.+|++++|+||||||||||+|++.++.... +.-.|||+...
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V 98 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV 98 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence 445999999999999999999999999999997743211 12347887431
Q ss_pred ------cc-----------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q 002306 695 ------SI-----------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 695 ------~~-----------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i 756 (938)
+. ..+++.+.++|+.+-..+..+.+|++++|.+.++++ +++|+|+|||||+.|.|+.....+
T Consensus 99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i 178 (254)
T COG1121 99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEI 178 (254)
T ss_pred HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHH
Confidence 11 235577889999999999999999888777766665 899999999999999999888877
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.++..+.++ |++||++|||++.. +++++
T Consensus 179 -~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~ 208 (254)
T COG1121 179 -YDLLKELRQE-GKTVLMVTHDLGLVMAYFDR 208 (254)
T ss_pred -HHHHHHHHHC-CCEEEEEeCCcHHhHhhCCE
Confidence 9999999985 99999999997654 56765
No 29
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=2.1e-19 Score=179.68 Aligned_cols=144 Identities=18% Similarity=0.130 Sum_probs=114.8
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcccccccccc---c
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA---S 695 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~~---~ 695 (938)
+..-|.+++++++.+|++++|+||+|||||||||++.++... .++| +|.+... .
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG-mVFQ~fnLFPH 91 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG-MVFQQFNLFPH 91 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC-eeccccccccc
Confidence 345688899999999999999999999999999998654211 1223 2322211 1
Q ss_pred ch----------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002306 696 IS----------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 696 ~~----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~ 752 (938)
++ ..-.++.++|+.|......+.+|++++|...|.++ |.+|.++|+|||||.|||.-
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 11 12257899999999999999999988887777665 89999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
...+ ..+++.|++ .|.|.+++||.+.+++ .+++
T Consensus 172 v~EV-L~vm~~LA~-eGmTMivVTHEM~FAr~Vadr 205 (240)
T COG1126 172 VGEV-LDVMKDLAE-EGMTMIIVTHEMGFAREVADR 205 (240)
T ss_pred HHHH-HHHHHHHHH-cCCeEEEEechhHHHHHhhhe
Confidence 8888 788899998 6999999999999985 6666
No 30
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=9.4e-20 Score=187.86 Aligned_cols=142 Identities=20% Similarity=0.214 Sum_probs=111.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------------hhccccccccc-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------------AQVGSFVPCDR----- 693 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------------aq~g~~vp~~~----- 693 (938)
.+.++++|++++|++++|+||+||||||||++++++.-. .++| ||.+..
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG-fvFQ~~nLl~~ 97 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIG-FVFQNFNLLPD 97 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEE-EECccCCCCCC
Confidence 567899999999999999999999999999999754211 1233 222111
Q ss_pred --c-----------------cchHHHHHHHhcCCchhhh-hcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002306 694 --A-----------------SISVRDCIFARVGAGDCQL-RGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 694 --~-----------------~~~~~d~i~~~~~~~d~~~-~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~ 752 (938)
+ .......++.++|..+... ...+.+|++++|...|+++ +.+|++||.||||..+|+..
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 0 0112335567778887777 6678888877776666655 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+..+ ..++..+.++.|+++|++|||.+++..|++
T Consensus 178 ~~~V-~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 178 AKEV-LELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 9999 888888877679999999999999999998
No 31
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=1.5e-19 Score=197.95 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=120.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---c----
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---S---- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~---- 695 (938)
..+.++++|++.+|++++|+|||||||||+||+++++... .++| |+|.... .
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~~ 96 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTVR 96 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccHH
Confidence 5677899999999999999999999999999999765321 1233 4443321 0
Q ss_pred -----------------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 696 -----------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 696 -----------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
...+++++..+|+.+......++||.+|++...++. .+.+|+|+||||||+|+||.....+
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~- 175 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI- 175 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH-
Confidence 123556788888887555667889988887766554 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEEE
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (938)
+.+++.++++.|++||++||.++.. .+|++ ...+.++++.+..
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~e~~~~~d~---------v~il~~G~~~~~g 219 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILEEAEELCDR---------VIILNDGKIIAEG 219 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE---------EEEEeCCEEEEeC
Confidence 8888888874448999999997655 56887 6677888877654
No 32
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=3.3e-19 Score=181.03 Aligned_cols=157 Identities=19% Similarity=0.159 Sum_probs=117.0
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh------------------------hhhccccccccc---
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------------------------MAQVGSFVPCDR--- 693 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~------------------------laq~g~~vp~~~--- 693 (938)
+.+.|.++++|++.+|++++|+||+|+||||+||+|+++.. .-++|.. .+..
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~Gvl-FQ~gALF 97 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVL-FQQGALF 97 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEE-eeccccc
Confidence 45678889999999999999999999999999999875421 1112211 1111
Q ss_pred ccchHHH----------------------HHHHhcCCchh-hhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002306 694 ASISVRD----------------------CIFARVGAGDC-QLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTS 749 (938)
Q Consensus 694 ~~~~~~d----------------------~i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd 749 (938)
..+.+++ .-+..+|+... ...-.|.+|++|++.+.+.++ +.+|+|+++||||+|+|
T Consensus 98 ssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLD 177 (263)
T COG1127 98 SSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177 (263)
T ss_pred cccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 1112222 12345676666 666778999999988777765 88999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCCh-HHHHHhhhcccccccccccceeEEEEEEE
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~-el~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
|.....+ ..++..|.+..|.|++++|||. ++..+||+ ..-+.++++.+.
T Consensus 178 PI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Dr---------v~~L~~gkv~~~ 227 (263)
T COG1127 178 PISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADR---------VAVLADGKVIAE 227 (263)
T ss_pred cchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhce---------EEEEeCCEEEEe
Confidence 9988777 7888888887899999999995 55578888 666777777654
No 33
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.79 E-value=3e-19 Score=175.86 Aligned_cols=151 Identities=17% Similarity=0.226 Sum_probs=112.9
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh--------------------ccccccccc--ccch------
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------------------VGSFVPCDR--ASIS------ 697 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq--------------------~g~~vp~~~--~~~~------ 697 (938)
..|++|....|++++|.|||||||||+||++|.+....+ +|....... ++++
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~ 97 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK 97 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH
Confidence 458999999999999999999999999999987654333 221110000 1111
Q ss_pred H---------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002306 698 V---------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (938)
Q Consensus 698 ~---------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il 761 (938)
. .+.+..+++..+.+.+....||.+|++...|.++ ..+|+++++|||++|+|......+ ..++
T Consensus 98 ~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~-~dfi 176 (245)
T COG4555 98 YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF-HDFI 176 (245)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH-HHHH
Confidence 1 1234456777777888888899999887777765 689999999999999999888777 8888
Q ss_pred HHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 762 EHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.++.+ .|..+||+||.++.. ++||+ ..-+..+++.+
T Consensus 177 ~q~k~-egr~viFSSH~m~EvealCDr---------vivlh~Gevv~ 213 (245)
T COG4555 177 KQLKN-EGRAVIFSSHIMQEVEALCDR---------VIVLHKGEVVL 213 (245)
T ss_pred HHhhc-CCcEEEEecccHHHHHHhhhe---------EEEEecCcEEE
Confidence 88876 699999999997554 59998 55555655544
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.2e-19 Score=185.04 Aligned_cols=144 Identities=24% Similarity=0.180 Sum_probs=111.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhc-----c----------ccccccccc------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-----G----------SFVPCDRAS------------ 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~-----g----------~~vp~~~~~------------ 695 (938)
..+..+++|++.+|++++|+||+|||||||||.||++.-.... | .||.++.+-
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence 3556699999999999999999999999999999876422110 0 123222211
Q ss_pred ------------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q 002306 696 ------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (938)
Q Consensus 696 ------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~ 762 (938)
...++.++..+|+.+........+|++|+|...|+++ +.+|.++|||||++.||...+..+ ...+.
T Consensus 96 ~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~l-q~~l~ 174 (248)
T COG1116 96 GLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL-QDELL 174 (248)
T ss_pred hhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHH-HHHHH
Confidence 1235567888999888888899999999998887776 889999999999999999999999 44444
Q ss_pred HHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 763 HLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 763 ~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+.++.+.|++|+|||.+.+ .++++
T Consensus 175 ~lw~~~~~TvllVTHdi~EAv~LsdR 200 (248)
T COG1116 175 RLWEETRKTVLLVTHDVDEAVYLADR 200 (248)
T ss_pred HHHHhhCCEEEEEeCCHHHHHhhhCE
Confidence 45445799999999997665 57766
No 35
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=4.5e-19 Score=179.43 Aligned_cols=145 Identities=17% Similarity=0.130 Sum_probs=111.1
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------hhcccccccccc---cchH---
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------AQVGSFVPCDRA---SISV--- 698 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------aq~g~~vp~~~~---~~~~--- 698 (938)
+..-+.++++|.+.+|++.+++|||||||||.+|+|..+.-. .+.-.|+|.+.. .+.+
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dq 92 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ 92 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHH
Confidence 345678899999999999999999999999999998754311 122247776542 2222
Q ss_pred ------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 699 ------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 699 ------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
.+.++.|++..+.......++|.+++|-...+ ..+.+|.|+|||||++||||.+...+- .
T Consensus 93 l~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk-~ 171 (300)
T COG4152 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK-D 171 (300)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHH-H
Confidence 23567778877777777788888777765544 457899999999999999999999884 4
Q ss_pred HHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+..+.+ .|+++||+||-++-+ ++|++
T Consensus 172 ~I~~lk~-~GatIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 172 AIFELKE-EGATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred HHHHHHh-cCCEEEEecchHHHHHHHhhh
Confidence 4555666 699999999998765 58887
No 36
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.5e-18 Score=174.16 Aligned_cols=158 Identities=20% Similarity=0.214 Sum_probs=125.0
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH------------------------hhhhcccc------ccc
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI------------------------LMAQVGSF------VPC 691 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~------------------------~laq~g~~------vp~ 691 (938)
++...++++|++++|++++|+||+|||||||||++..++ +..++|+. ||.
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r 95 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc
Confidence 456677999999999999999999999999999986432 23445532 221
Q ss_pred cc----------ccchHH----------H-----HHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002306 692 DR----------ASISVR----------D-----CIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELG 745 (938)
Q Consensus 692 ~~----------~~~~~~----------d-----~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~ 745 (938)
.. ...+.+ | ..+.|+|..+......+++|++.+|...|.+. +.+|.++|.|||.
T Consensus 96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 11 001111 1 34688999999999999999888887777665 7899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEEE
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (938)
++|||.....+ ..+++.+.++.|.|+|++-|+.+++ ++|++ ..+++.+++.++.
T Consensus 176 asLDp~~a~~V-m~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~R---------iigl~~G~ivfDg 230 (258)
T COG3638 176 ASLDPESAKKV-MDILKDINQEDGITVIVNLHQVDLAKKYADR---------IIGLKAGRIVFDG 230 (258)
T ss_pred cccChhhHHHH-HHHHHHHHHHcCCEEEEEechHHHHHHHHhh---------heEecCCcEEEeC
Confidence 99999999998 8888888887899999999999998 59998 7888888877654
No 37
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.76 E-value=2.5e-18 Score=175.78 Aligned_cols=142 Identities=16% Similarity=0.150 Sum_probs=106.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccc----ccc-------cccchHHHHHHHhcCCchhh
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV----PCD-------RASISVRDCIFARVGAGDCQ 712 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~v----p~~-------~~~~~~~d~i~~~~~~~d~~ 712 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .-|... +.. ...++++..++..+|+.+.+
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~ 91 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLA 91 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHh
Confidence 356688999999999999999999999999999875422 223211 100 01244444577888888777
Q ss_pred hhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 713 LRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 713 ~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
......+|+++++...+. ..+.+|+++|||||++|+|+.....+ ..+++.+.++.++++|++||+.+.. +++++
T Consensus 92 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 92 DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL-LELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 777778887766655554 45889999999999999999888887 6677777653378999999998765 67776
No 38
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.75 E-value=2.4e-18 Score=173.87 Aligned_cols=141 Identities=19% Similarity=0.162 Sum_probs=99.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccccccc----ccchHHHHHHHhcCCch-hhhhcccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR----ASISVRDCIFARVGAGD-CQLRGVST 718 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~----~~~~~~d~i~~~~~~~d-~~~~~~s~ 718 (938)
.+.++++|++.+|++++|+||||||||||||++..-.--..++...+... ..+.. ..++.+++..+ .+....+.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q-~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ-LQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH-HHHHHHcCCCccccCCCcCc
Confidence 45669999999999999999999999999998731000000011111100 01111 34677888765 36667778
Q ss_pred hHHHHHHHHHHHH-hCCC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 719 FMQEMLETASILK-GATD--RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 719 f~~e~~~~~~il~-~a~~--~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+++++++...+.+ .+.+ |+++|||||++|+|+.....+ ..++..+.+ .|.++|++||+++....+++
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l-~~~l~~~~~-~g~tvIivSH~~~~~~~~d~ 157 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL-LEVIKGLID-LGNTVILIEHNLDVLSSADW 157 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHhCCE
Confidence 8877776655554 4678 999999999999999988888 566666665 58999999999887766655
No 39
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=1.5e-18 Score=170.77 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=118.8
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH--------------------hhhhcc-cccccccc---cc
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------LMAQVG-SFVPCDRA---SI 696 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--------------------~laq~g-~~vp~~~~---~~ 696 (938)
+...|.|+++|++.+|++++|.|||||||||.+-++.+++ ..|++| .|+|++.. .+
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 4567889999999999999999999999999999986543 235555 57787752 33
Q ss_pred hHHHHHH-----------------------HhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhh
Q 002306 697 SVRDCIF-----------------------ARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 697 ~~~d~i~-----------------------~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~ 752 (938)
++-|+|. ..++...-......++|++.++...|. +.|.+|+++|||||++|.||..
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 4444433 333333333334455665554444444 4588999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCC-hHHHHHhhhcccccccccccceeEEEEEEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHF-HELTALAHENANEFNTKQMVGVANYHVSAHID 810 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~-~el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (938)
-..| ..++.+|.+ .|..++++-|+ -|...++++ ..-+..+++.++..
T Consensus 175 V~dI-q~iI~~L~~-rgiGvLITDHNVREtL~i~dR---------aYIi~~G~vla~G~ 222 (243)
T COG1137 175 VIDI-QRIIKHLKD-RGIGVLITDHNVRETLDICDR---------AYIISDGKVLAEGS 222 (243)
T ss_pred HHHH-HHHHHHHHh-CCceEEEccccHHHHHhhhhe---------EEEEecCeEEecCC
Confidence 9999 999999998 79999999999 466789998 66777888777644
No 40
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.75 E-value=5.3e-18 Score=187.55 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=114.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cchH-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISV- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~~- 698 (938)
..+.++++|++.+|++++|+||||||||||+|+++++... .++ .|+|.... .+++
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i-g~v~q~~~~~~~~tv~ 98 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVR 98 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE-EEEeccCcCCCCCcHH
Confidence 3577899999999999999999999999999999765311 122 24554421 1111
Q ss_pred --------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
++.++..++..+......+.+|++|++...+++ .+.+|+++|||||++|+||.....+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l- 177 (306)
T PRK13537 99 ENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM- 177 (306)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH-
Confidence 123445566666566667788888877665554 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
+.++..+.+ .|.++|++||+++.. .+|++ ...+.++++.+.
T Consensus 178 ~~~l~~l~~-~g~till~sH~l~e~~~~~d~---------i~il~~G~i~~~ 219 (306)
T PRK13537 178 WERLRSLLA-RGKTILLTTHFMEEAERLCDR---------LCVIEEGRKIAE 219 (306)
T ss_pred HHHHHHHHh-CCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEEE
Confidence 888888876 589999999998765 68888 666777777554
No 41
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.75 E-value=5e-18 Score=189.78 Aligned_cols=156 Identities=19% Similarity=0.141 Sum_probs=116.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cchH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SISV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~~-- 698 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... .+++
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e 133 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRE 133 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHH
Confidence 4578899999999999999999999999999999765311 111124443321 1111
Q ss_pred -------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 699 -------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 699 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
++.++.++++.+.......++|++|++...+++ .+.+|+++|||||++|+||.....+ +
T Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l-~ 212 (340)
T PRK13536 134 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI-W 212 (340)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-H
Confidence 223455666666666677888888877766555 4789999999999999999988888 8
Q ss_pred HHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEEE
Q 002306 759 AICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (938)
.++..+.+ .|.++|++||+++.. ++|++ ...+.++++.+..
T Consensus 213 ~~l~~l~~-~g~tilisSH~l~e~~~~~d~---------i~il~~G~i~~~g 254 (340)
T PRK13536 213 ERLRSLLA-RGKTILLTTHFMEEAERLCDR---------LCVLEAGRKIAEG 254 (340)
T ss_pred HHHHHHHh-CCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEEEc
Confidence 88888876 589999999998765 68888 6667777776543
No 42
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.75 E-value=5.5e-18 Score=187.53 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=113.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cch---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SIS--- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~--- 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .++ .|+|+... .++
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI-GIVPQYASVDEDLTGRE 85 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhc-EEecCCCCCCCCCcHHH
Confidence 456799999999999999999999999999999764311 112 24444321 111
Q ss_pred ------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 698 ------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 698 ------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
.++.++..+|..+......+++|++|++...+++ .+.+|+++|||||++|+||.....+ +
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l-~ 164 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI-W 164 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-H
Confidence 1234566777776667777888888877655554 4789999999999999999888887 7
Q ss_pred HHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 759 AICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
.+++.+.+ .|.++|++||+.+.. .+|++ ...+.++++...
T Consensus 165 ~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~---------v~~l~~G~i~~~ 205 (302)
T TIGR01188 165 DYIRALKE-EGVTILLTTHYMEEADKLCDR---------IAIIDHGRIIAE 205 (302)
T ss_pred HHHHHHHh-CCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEEE
Confidence 78888876 589999999998665 57887 666677776543
No 43
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-17 Score=176.88 Aligned_cols=143 Identities=19% Similarity=0.140 Sum_probs=103.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------------hcccccccccc---cchH-------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------QVGSFVPCDRA---SISV------- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------------q~g~~vp~~~~---~~~~------- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|.... ..++
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALG 97 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHH
Confidence 4566899999999999999999999999999998653210 11124443321 0111
Q ss_pred --------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002306 699 --------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (938)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (938)
+..++.++|..+.+....+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~-~~~l~~ 176 (220)
T cd03293 98 LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLD 176 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHH-HHHHHH
Confidence 223456667766666667788877766655554 4789999999999999999988888 677776
Q ss_pred HHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 764 LVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 764 l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+.++.|.++|++||+.+. ..++++
T Consensus 177 ~~~~~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 177 IWRETGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred HHHHcCCEEEEEecCHHHHHHhCCE
Confidence 654358899999999874 467776
No 44
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.74 E-value=4.8e-18 Score=179.23 Aligned_cols=143 Identities=23% Similarity=0.207 Sum_probs=103.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhcccccccccc---cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~---~~ 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 456689999999999999999999999999999754210 111123333211 00
Q ss_pred h---------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 S---------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
. .++.++..+|..+.......++|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (218)
T cd03255 98 TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177 (218)
T ss_pred cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHH
Confidence 1 1234556677766666666778877766655554 48899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..++..+.++.|.++|++||+.+...++++
T Consensus 178 ~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d~ 209 (218)
T cd03255 178 EV-MELLRELNKEAGTTIVVVTHDPELAEYADR 209 (218)
T ss_pred HH-HHHHHHHHHhcCCeEEEEECCHHHHhhhcE
Confidence 77 777777765348999999999877666665
No 45
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.74 E-value=7.7e-18 Score=175.91 Aligned_cols=142 Identities=17% Similarity=0.094 Sum_probs=103.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------hhcccccccccc----cch-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------AQVGSFVPCDRA----SIS----- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------aq~g~~vp~~~~----~~~----- 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... ..+
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 93 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL 93 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence 456689999999999999999999999999999765310 011124444321 111
Q ss_pred ------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 698 ------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 698 ------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
.+..++.++|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~ 172 (205)
T cd03226 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GELIREL 172 (205)
T ss_pred hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHHHH
Confidence 1234556677766666666778877777655554 4789999999999999999888887 7777777
Q ss_pred HhcCCCeEEEEeCChHHH-HHhhh
Q 002306 765 VEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ .|.++|++||+++.. .++++
T Consensus 173 ~~-~~~tii~~sH~~~~~~~~~d~ 195 (205)
T cd03226 173 AA-QGKAVIVITHDYEFLAKVCDR 195 (205)
T ss_pred HH-CCCEEEEEeCCHHHHHHhCCE
Confidence 65 589999999998765 46776
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=8e-18 Score=176.89 Aligned_cols=143 Identities=22% Similarity=0.157 Sum_probs=103.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hcccccccccc---cchH----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV---- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~---~~~~---- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHH
Confidence 4667999999999999999999999999999997653110 01124444321 0111
Q ss_pred -----------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
+..++..+|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l-~~~ 172 (213)
T cd03259 94 AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL-REE 172 (213)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 223455666666566666778877776655555 4789999999999999999888888 677
Q ss_pred HHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 761 CEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+..+.++.|.++|++||+.+. ..++++
T Consensus 173 l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 173 LKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred HHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 777765348999999999875 467776
No 47
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-17 Score=176.80 Aligned_cols=153 Identities=20% Similarity=0.186 Sum_probs=108.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cch----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SIS---- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~---- 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ...
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence 466799999999999999999999999999999865311 011124443321 011
Q ss_pred -----------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 698 -----------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 698 -----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
.++.++.++|..+......+.+|+++++...++ +.+.+|+++|||||++|+|+.....+ +.
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l-~~ 172 (220)
T cd03265 94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV-WE 172 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH-HH
Confidence 123455667776666666778887776665554 45889999999999999999888887 67
Q ss_pred HHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 760 ICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
++..+.++.|.++|++||+.+.. .++++ ...+.++++.
T Consensus 173 ~l~~~~~~~~~tvi~~tH~~~~~~~~~d~---------i~~l~~G~i~ 211 (220)
T cd03265 173 YIEKLKEEFGMTILLTTHYMEEAEQLCDR---------VAIIDHGRII 211 (220)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEeCCEEE
Confidence 77777653488999999998765 56776 5555555553
No 48
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.74 E-value=7.7e-18 Score=177.45 Aligned_cols=142 Identities=16% Similarity=0.086 Sum_probs=103.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... ..+
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 466789999999999999999999999999999764210 111234443321 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+ +..++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 176 (216)
T TIGR00960 97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD 176 (216)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 1 223456667666666666788877766655554 588999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 177 l-~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~ 207 (216)
T TIGR00960 177 I-MRLFEEFNR-RGTTVLVATHDINLVETYRHR 207 (216)
T ss_pred H-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 8 667777765 589999999998765 46665
No 49
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.73 E-value=1.2e-17 Score=170.16 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=109.1
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH---------------------------h-hhhcccc-----
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------------L-MAQVGSF----- 688 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------------~-laq~g~~----- 688 (938)
...+.++++|++.+|++++++||+||||||+||+|..++ + .-|+|.|
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 346778999999999999999999999999999985432 1 1234433
Q ss_pred ------cccccc----c-chHHHHHHHhcCCc--hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 689 ------VPCDRA----S-ISVRDCIFARVGAG--DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 689 ------vp~~~~----~-~~~~d~i~~~~~~~--d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
||.-.. + -..++.++..+|+. +...+..+.+|++.+|..-+++ .|.+|.++|||||++.+||..+.
T Consensus 93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~ 172 (309)
T COG1125 93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172 (309)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHH
Confidence 221110 0 12245677888875 4566777888877776655555 48899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ ..-+..+.++.|.|++|+|||.+.+ .++++
T Consensus 173 ~l-Q~e~~~lq~~l~kTivfVTHDidEA~kLadr 205 (309)
T COG1125 173 QL-QEEIKELQKELGKTIVFVTHDIDEALKLADR 205 (309)
T ss_pred HH-HHHHHHHHHHhCCEEEEEecCHHHHHhhhce
Confidence 99 6666777777899999999997665 68887
No 50
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.73 E-value=1.2e-17 Score=175.45 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=103.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hcccccccccc---cchH----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV---- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~---~~~~---- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 3566899999999999999999999999999998653110 00123443321 0111
Q ss_pred -----------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
++.++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l-~~~ 172 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM-RAE 172 (213)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 234556677766666667788877777655554 5789999999999999999988888 667
Q ss_pred HHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++.+.++.|+++|++||+.+.. .++++
T Consensus 173 l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 173 LKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 7777653589999999997654 56766
No 51
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.73 E-value=1.7e-17 Score=173.69 Aligned_cols=142 Identities=20% Similarity=0.146 Sum_probs=103.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------hhcccccccccc---cchH----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------AQVGSFVPCDRA---SISV---- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------aq~g~~vp~~~~---~~~~---- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..++
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 466789999999999999999999999999999765210 011224454321 1111
Q ss_pred -------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
++.++.+++..+........+|+++++...++ ..+.+|+++|||||++|+|+.....+ +.++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~ 172 (208)
T cd03268 94 RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL-RELILSL 172 (208)
T ss_pred HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-HHHHHHH
Confidence 23445666766666666677777666655444 45789999999999999999888887 6777777
Q ss_pred HhcCCCeEEEEeCChHHH-HHhhh
Q 002306 765 VEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ .|.++|++||+.+.. .++++
T Consensus 173 ~~-~~~tii~~tH~~~~~~~~~d~ 195 (208)
T cd03268 173 RD-QGITVLISSHLLSEIQKVADR 195 (208)
T ss_pred HH-CCCEEEEEcCCHHHHHHhcCE
Confidence 76 589999999998766 56776
No 52
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.73 E-value=1.9e-17 Score=178.52 Aligned_cols=143 Identities=17% Similarity=0.101 Sum_probs=104.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------------hccccccccccc---ch--------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------QVGSFVPCDRAS---IS-------- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------------q~g~~vp~~~~~---~~-------- 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|....- ..
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 105 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG 105 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhc
Confidence 4667999999999999999999999999999997653110 111244433210 11
Q ss_pred -------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002306 698 -------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (938)
Q Consensus 698 -------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (938)
.+..++..+|+.+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++..+.++.|
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~~ 184 (257)
T PRK11247 106 LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM-QDLIESLWQQHG 184 (257)
T ss_pred ccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHHcC
Confidence 1234566777777667777888877777655555 4789999999999999999888887 666666654358
Q ss_pred CeEEEEeCChHHH-HHhhh
Q 002306 770 APTLFATHFHELT-ALAHE 787 (938)
Q Consensus 770 ~~~l~~TH~~el~-~~~~~ 787 (938)
.++|++||+.+.. .++++
T Consensus 185 ~tviivsHd~~~~~~~~d~ 203 (257)
T PRK11247 185 FTVLLVTHDVSEAVAMADR 203 (257)
T ss_pred CEEEEEeCCHHHHHHhCCE
Confidence 9999999998764 67776
No 53
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.73 E-value=1.9e-17 Score=175.88 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=102.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhcccccccccc---cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~---~~ 696 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 366799999999999999999999999999999865210 011224443321 11
Q ss_pred hH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.+ +..++..+|..+.+......+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 11 123455566665556666777776666555554 57899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ +.++..++++.|.++|++||+.+....+++
T Consensus 184 ~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d~ 215 (228)
T PRK10584 184 KI-ADLLFSLNREHGTTLILVTHDLQLAARCDR 215 (228)
T ss_pred HH-HHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 77 777777765358899999999887766665
No 54
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.73 E-value=1.4e-17 Score=176.05 Aligned_cols=143 Identities=18% Similarity=0.132 Sum_probs=103.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------h-hcccccccccc---cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------A-QVGSFVPCDRA---SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------a-q~g~~vp~~~~---~~ 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|+... ..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 456689999999999999999999999999999754210 0 11234443321 11
Q ss_pred hH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
++ +..++..+|..+.+.....++|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 178 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence 11 224556667666666667788877776655555 57899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..++..+.++.|.++|++||+.+....+++
T Consensus 179 ~l-~~~l~~~~~~~~~tii~~tH~~~~~~~~d~ 210 (221)
T TIGR02211 179 II-FDLMLELNRELNTSFLVVTHDLELAKKLDR 210 (221)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHhhcCE
Confidence 88 677777765358899999999887665554
No 55
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.73 E-value=1.8e-17 Score=183.52 Aligned_cols=155 Identities=20% Similarity=0.174 Sum_probs=112.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cchH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SISV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~~-- 698 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... ..++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 96 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE 96 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHH
Confidence 3467799999999999999999999999999999765311 011124443321 1111
Q ss_pred -------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 699 -------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 699 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
++.++..++..+......+++|+++++...+++ .+.+|+++|||||++|+|+.....+ +
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l-~ 175 (303)
T TIGR01288 97 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI-W 175 (303)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-H
Confidence 123445566666566667788888777665555 4789999999999999999988888 7
Q ss_pred HHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 759 AICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
.++..+.+ .|.++|++||+++.. ++|++ ...+.++++...
T Consensus 176 ~~l~~~~~-~g~til~~sH~~~~~~~~~d~---------i~~l~~G~i~~~ 216 (303)
T TIGR01288 176 ERLRSLLA-RGKTILLTTHFMEEAERLCDR---------LCVLESGRKIAE 216 (303)
T ss_pred HHHHHHHh-CCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEEE
Confidence 77777776 589999999998765 57887 666667666543
No 56
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2e-17 Score=176.55 Aligned_cols=143 Identities=19% Similarity=0.147 Sum_probs=102.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... ..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 456689999999999999999999999999999764211 011124444321 111
Q ss_pred H----------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 698 V----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 698 ~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+ +..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 1 123455566655556666778877766655554 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ ..++..+.++.|.++|++||+.+.. .++++
T Consensus 174 ~l-~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~ 206 (235)
T cd03261 174 VI-DDLIRSLKKELGLTSIMVTHDLDTAFAIADR 206 (235)
T ss_pred HH-HHHHHHHHHhcCcEEEEEecCHHHHHHhcCE
Confidence 87 6777777653489999999998755 56776
No 57
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.8e-17 Score=173.90 Aligned_cols=142 Identities=22% Similarity=0.224 Sum_probs=101.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------------hcccccccccc---cchH------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------QVGSFVPCDRA---SISV------ 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------------q~g~~vp~~~~---~~~~------ 698 (938)
.+.++++|++.+|++++|+|||||||||||++++++.... ..-.|+|+... ..++
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 93 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVY 93 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHH
Confidence 4566899999999999999999999999999998653110 01123443321 1111
Q ss_pred ---------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q 002306 699 ---------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (938)
Q Consensus 699 ---------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~ 762 (938)
+..++..+|..+........+|+++++...++ ..+.+|+++|||||++|+|+.....+ ..+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~-~~~l~ 172 (210)
T cd03269 94 LAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL-KDVIR 172 (210)
T ss_pred HHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHH
Confidence 22345556665555555667777766655544 45789999999999999999888887 66677
Q ss_pred HHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 763 HLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 763 ~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+.+ .|+++|++||+.+.. .++++
T Consensus 173 ~~~~-~~~tii~~sH~~~~~~~~~d~ 197 (210)
T cd03269 173 ELAR-AGKTVILSTHQMELVEELCDR 197 (210)
T ss_pred HHHH-CCCEEEEECCCHHHHHHhhhE
Confidence 7765 488999999998765 56776
No 58
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.73 E-value=1.7e-17 Score=185.18 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=115.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhccccccccccc---ch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRAS---IS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~~---~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. .+.-.|+|+...- .+
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 466799999999999999999999999999999764210 0111233333210 01
Q ss_pred ---------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 ---------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~ 755 (938)
.+..++.++|+.+......+.+|++++|...|.++ +++|+++|+||||+|+|+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~ 178 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQS 178 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 12345677888877777888999887776665554 88999999999999999999888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
+ +.+++.+.++.|.++|++||+++.. ++|++ ...+.++++..
T Consensus 179 i-~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~---------v~vl~~G~iv~ 221 (343)
T TIGR02314 179 I-LELLKEINRRLGLTILLITHEMDVVKRICDC---------VAVISNGELIE 221 (343)
T ss_pred H-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 8 7888888764589999999998876 67887 65666666643
No 59
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.73 E-value=2.2e-17 Score=177.26 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=102.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-----------------------hhhcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-----------------------MAQVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-----------------------laq~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++.. ..+...|+|+... ..+
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 46679999999999999999999999999999875421 0111234443321 011
Q ss_pred H-----------------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 698 V-----------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 698 ~-----------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
+ +..++..+|..+........+|+++++...+++ .+.+|+++|||||++|
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 175 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 1 123455566665566666788877776655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..+++.+.++.|+++|++||+.+.. +++++
T Consensus 176 LD~~~~~~l-~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~ 215 (243)
T TIGR02315 176 LDPKTSKQV-MDYLKRINKEDGITVIINLHQVDLAKKYADR 215 (243)
T ss_pred CCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 999888777 6777777653589999999998765 56766
No 60
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.8e-17 Score=176.16 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=102.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLS 94 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCc
Confidence 456689999999999999999999999999999754210 011224443321 011
Q ss_pred H-----------------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 698 V-----------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 698 ~-----------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
+ +..++..++..+........+|+++++...+++ .+.+|+++|||||++|
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 174 (241)
T cd03256 95 VLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174 (241)
T ss_pred HHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 1 123345566655555566778877766655554 5889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
+|+.....+ +.+++.+.++.|.++|++||+.+... ++++
T Consensus 175 LD~~~~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~ 214 (241)
T cd03256 175 LDPASSRQV-MDLLKRINREEGITVIVSLHQVDLAREYADR 214 (241)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 999888887 77777776535899999999987765 7776
No 61
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.72 E-value=2.5e-17 Score=172.92 Aligned_cols=142 Identities=23% Similarity=0.193 Sum_probs=103.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc----cchH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA----SISV- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~----~~~~- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ...+
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~ 94 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE 94 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHH
Confidence 456689999999999999999999999999999764211 011134444321 1111
Q ss_pred --------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
+..++.++|..+.+....+.+|+++++...+++ .+.+|+++|||||++|+|+.....+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~- 173 (211)
T cd03225 95 EEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL- 173 (211)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-
Confidence 123455667666666677788877776655555 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
..++..+.+ .|+++|++||+.+.. .++++
T Consensus 174 ~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~ 203 (211)
T cd03225 174 LELLKKLKA-EGKTIIIVTHDLDLLLELADR 203 (211)
T ss_pred HHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 667777766 489999999998765 45665
No 62
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.72 E-value=1.6e-17 Score=177.41 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=107.4
Q ss_pred ccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccc
Q 002306 630 GSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVP 690 (938)
Q Consensus 630 ~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp 690 (938)
+.-|+.+....+...+.++++|++.+|++++|+||||||||||||+++++... .+...|+|
T Consensus 21 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 100 (236)
T cd03267 21 GSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF 100 (236)
T ss_pred hhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEc
Confidence 33444443333345678899999999999999999999999999999865311 01112343
Q ss_pred ccc----ccchHH---------------------HHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCC
Q 002306 691 CDR----ASISVR---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDEL 744 (938)
Q Consensus 691 ~~~----~~~~~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp 744 (938)
.+. ...++. ..++..+|..+........+|+++++...++ ..+.+|+++|||||
T Consensus 101 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 101 GQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 211 111111 2234445655555555667777766665544 45789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++|+|+.....+ ..++..+.++.++++|++||+++.. .++++
T Consensus 181 t~~LD~~~~~~l-~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 223 (236)
T cd03267 181 TIGLDVVAQENI-RNFLKEYNRERGTTVLLTSHYMKDIEALARR 223 (236)
T ss_pred CCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence 999999988888 6677777654588999999998764 57776
No 63
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.72 E-value=3.5e-17 Score=160.11 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=107.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh------------------------hhhcccccccccc---c
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------------------------MAQVGSFVPCDRA---S 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~------------------------laq~g~~vp~~~~---~ 695 (938)
....+|++|++++|+++-|+||+|||||||||.|..... -.|+|.. .++.. .
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvV-FQD~rLL~~ 93 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVV-FQDFRLLPD 93 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeE-eeecccccc
Confidence 345679999999999999999999999999999864321 1234422 11110 0
Q ss_pred c---------------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q 002306 696 I---------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 696 ~---------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~ 753 (938)
. ..+...+..+|+.+....-.+.+|++.+|...|.++ ...|.++|.||||.++||...
T Consensus 94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s 173 (223)
T COG2884 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173 (223)
T ss_pred chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence 0 113356778898888888888888666665555554 899999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~ 786 (938)
..| ..+++.+.. .|.||+++|||.++.+-..
T Consensus 174 ~~i-m~lfeeinr-~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 174 WEI-MRLFEEINR-LGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHH-HHHHHHHhh-cCcEEEEEeccHHHHHhcc
Confidence 888 788888886 7999999999999876443
No 64
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.5e-17 Score=175.64 Aligned_cols=143 Identities=16% Similarity=0.110 Sum_probs=102.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhcccccccccc---cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~---~~ 696 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 467799999999999999999999999999999765210 011124443321 01
Q ss_pred hH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
++ +..++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 103 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 182 (233)
T PRK11629 103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182 (233)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 11 224456667666566666778877766655554 57899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..+++.+.++.|.++|++||+.+....+++
T Consensus 183 ~l-~~~l~~~~~~~g~tvii~sH~~~~~~~~~~ 214 (233)
T PRK11629 183 SI-FQLLGELNRLQGTAFLVVTHDLQLAKRMSR 214 (233)
T ss_pred HH-HHHHHHHHHhCCCEEEEEeCCHHHHHhhCE
Confidence 77 777777764358999999999887654433
No 65
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.72 E-value=2.7e-17 Score=175.73 Aligned_cols=142 Identities=20% Similarity=0.174 Sum_probs=102.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc---cchH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SISV- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~---~~~~- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ...-.|+|+... ...+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 456689999999999999999999999999999764210 011124443321 0111
Q ss_pred ------------------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 699 ------------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 699 ------------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
+..++..+|..+......+++|+++++...+.+ .+.+|+++|||||++|
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 173 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 223445566655556666778877776655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ +.++..+.+ .|+++|++||+.+.. .++++
T Consensus 174 LD~~~~~~l-~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~ 212 (236)
T cd03219 174 LNPEETEEL-AELIRELRE-RGITVLLVEHDMDVVMSLADR 212 (236)
T ss_pred CCHHHHHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE
Confidence 999888887 777777776 589999999998765 56776
No 66
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.72 E-value=2e-17 Score=174.03 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=102.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..+
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence 466799999999999999999999999999999765210 111234443321 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+ +..++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 175 (214)
T TIGR02673 96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 1 223455666666566666778877766655554 588999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ ..+++.+.+ .|.++|++||+.+.. .++++
T Consensus 176 l-~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~ 206 (214)
T TIGR02673 176 I-LDLLKRLNK-RGTTVIVATHDLSLVDRVAHR 206 (214)
T ss_pred H-HHHHHHHHH-cCCEEEEEeCCHHHHHHhcCE
Confidence 8 667776765 589999999997655 46665
No 67
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=4.5e-17 Score=173.70 Aligned_cols=153 Identities=17% Similarity=0.074 Sum_probs=108.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 455689999999999999999999999999999754210 111234443321 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+ +..++.++|..+......+.+|+++++...++ +.+.+|+++|||||++|+|+.....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 1 22345666766666666778887776655554 4588999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+ +.++..+.++.|+++|++||+.+.. .++++ ...+.++++.
T Consensus 179 l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~---------i~~l~~G~i~ 220 (233)
T cd03258 179 I-LALLRDINRELGLTIVLITHEMEVVKRICDR---------VAVMEKGEVV 220 (233)
T ss_pred H-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 7 6777777653489999999998765 57776 5555555553
No 68
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.7e-17 Score=180.62 Aligned_cols=143 Identities=16% Similarity=0.117 Sum_probs=106.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh----------------------hhhccccccccc----ccch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL----------------------MAQVGSFVPCDR----ASIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~----------------------laq~g~~vp~~~----~~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.. +.+...|+|+.. ....
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 46779999999999999999999999999999975421 011123555542 1111
Q ss_pred H---------------------HHHHHHhcCCc--hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q 002306 698 V---------------------RDCIFARVGAG--DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~--d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~ 753 (938)
+ ++.++..+|+. +......+.+|+++++...+.++ +.+|+++|||||++|+|+...
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~ 180 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence 1 23455666775 44566677888887776666554 789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
..+ +.++..++++.|.++|++||+++.. .+|++
T Consensus 181 ~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr 214 (287)
T PRK13637 181 DEI-LNKIKELHKEYNMTIILVSHSMEDVAKLADR 214 (287)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 888 7788887764589999999998765 57877
No 69
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.72 E-value=3.4e-17 Score=174.48 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=102.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc---cchH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SISV- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~---~~~~- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ...-.|+|+... ..++
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 466799999999999999999999999999999765211 011123443321 0111
Q ss_pred --------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
++.++..+|..+........+|+++++...++ ..+.+|+++|||||++|+|+.....+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~- 172 (232)
T cd03218 94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI- 172 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH-
Confidence 22345556666556666677887776665544 45789999999999999999888887
Q ss_pred HHHHHHHHhcCCCeEEEEeCChH-HHHHhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~e-l~~~~~~ 787 (938)
..+++.+.+ .|.++|++||+.+ +..++++
T Consensus 173 ~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~ 202 (232)
T cd03218 173 QKIIKILKD-RGIGVLITDHNVRETLSITDR 202 (232)
T ss_pred HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 777777776 5889999999985 5567776
No 70
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.72 E-value=2.5e-17 Score=175.96 Aligned_cols=143 Identities=19% Similarity=0.170 Sum_probs=103.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-------------------hcccccccccc---cchH---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRA---SISV--- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-------------------q~g~~vp~~~~---~~~~--- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.... +...|+|+... ..++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 94 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQN 94 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHH
Confidence 4667899999999999999999999999999997653110 11124443321 1111
Q ss_pred ------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 699 ------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 699 ------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
+..++..+|..+........+|+++++...+. ..+.+|+++|||||++|+|+.....+ ..
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l-~~ 173 (236)
T TIGR03864 95 LRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI-VA 173 (236)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH-HH
Confidence 12345566666656666677887776665544 45889999999999999999988888 66
Q ss_pred HHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
++..+.++.|.++|++||+.+....+++
T Consensus 174 ~l~~~~~~~~~tiii~sH~~~~~~~~d~ 201 (236)
T TIGR03864 174 HVRALCRDQGLSVLWATHLVDEIEADDR 201 (236)
T ss_pred HHHHHHHhCCCEEEEEecChhhHhhCCE
Confidence 6667764358999999999887766665
No 71
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.5e-17 Score=185.40 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=112.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh------------------ccccccccccc---c------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------VGSFVPCDRAS---I------ 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq------------------~g~~vp~~~~~---~------ 696 (938)
.+.++++|++.+|++++|+||||||||||||+|+++..... .-.|||+..+- +
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENM 97 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHH
Confidence 46678999999999999999999999999999987532100 11234433211 1
Q ss_pred ---------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 697 ---------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 697 ---------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
..++.++..+|+.+...+....+|++++|...+.+ .+.+|+++|||||++|+|+.....+ ...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l-~~~ 176 (356)
T PRK11650 98 AYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM-RLE 176 (356)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHH
Confidence 11335567778877777777888877776655555 4889999999999999999998888 666
Q ss_pred HHHHHhcCCCeEEEEeCChH-HHHHhhhcccccccccccceeEEEEEE
Q 002306 761 CEHLVEEIRAPTLFATHFHE-LTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
++.+.++.|.++|++||+.+ ...++++ ...+.++++..
T Consensus 177 l~~l~~~~g~tii~vTHd~~ea~~l~D~---------i~vl~~G~i~~ 215 (356)
T PRK11650 177 IQRLHRRLKTTSLYVTHDQVEAMTLADR---------VVVMNGGVAEQ 215 (356)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEeCCEEEE
Confidence 66776646899999999975 4568887 55556666543
No 72
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.1e-17 Score=175.54 Aligned_cols=143 Identities=18% Similarity=0.126 Sum_probs=101.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hcccccccccc---cchH----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV---- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~---~~~~---- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|+... ..++
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 95 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV 95 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHH
Confidence 4667999999999999999999999999999998653110 01123333211 0111
Q ss_pred ---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 699 ---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
++.++.++|..+.......++|+++++...+++ .+.+|+++|||||++|+|+.....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l 175 (239)
T cd03296 96 AFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175 (239)
T ss_pred hhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 123455566655555566778877766655554 4789999999999999999888887
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+.++..+.++.|+++|++||+.+. ..++++
T Consensus 176 -~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 206 (239)
T cd03296 176 -RRWLRRLHDELHVTTVFVTHDQEEALEVADR 206 (239)
T ss_pred -HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 777777765348899999999875 456776
No 73
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.71 E-value=2.4e-17 Score=173.42 Aligned_cols=142 Identities=16% Similarity=0.144 Sum_probs=101.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhccccccccccc---ch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRAS---IS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~~---~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|++..- .+
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 456689999999999999999999999999999765210 0112344433210 11
Q ss_pred H---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+ +..++.++|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 174 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 1 223455666666555566778777766655544 488999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
+ ..+++.+.+ .|.++|++||+.+... ++++
T Consensus 175 ~-~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~ 205 (214)
T cd03292 175 I-MNLLKKINK-AGTTVVVATHAKELVDTTRHR 205 (214)
T ss_pred H-HHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 7 666677765 4899999999987654 6665
No 74
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.71 E-value=3.3e-17 Score=164.56 Aligned_cols=134 Identities=18% Similarity=0.141 Sum_probs=90.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccc-ccccc-ccchHHHHHHHhcCCchhhhhcccchHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF-VPCDR-ASISVRDCIFARVGAGDCQLRGVSTFMQ 721 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~-vp~~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~ 721 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ..|.. +.... ......+..-.+++. ...+|+
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qLS~ 85 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEVSFASPRDARRAGIAM-------VYQLSV 85 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCcCCHHHHHhcCeEE-------EEecCH
Confidence 456688999999999999999999999999999875422 22211 11110 011111111111221 111665
Q ss_pred HHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 722 EMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 722 e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
++++. +.+...+.+|+++|||||++|+|+.....+ +.+++.+.+ .+.++|++||+++. .+++++
T Consensus 86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~ 151 (163)
T cd03216 86 GERQMVEIARALARNARLLILDEPTAALTPAEVERL-FKVIRRLRA-QGVAVIFISHRLDEVFEIADR 151 (163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 55554 444455889999999999999999988888 677777765 48999999999874 456776
No 75
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.71 E-value=3e-17 Score=172.52 Aligned_cols=142 Identities=18% Similarity=0.133 Sum_probs=102.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcccccccccc---cchH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA---SISV 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~~---~~~~ 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+...|+|.... ..++
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 456689999999999999999999999999999865311 011224443321 0111
Q ss_pred ----------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 699 ----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 699 ----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+..++.++|..+.+.....++|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 173 (213)
T cd03262 94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173 (213)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 123455566666566666778877766655554 578999999999999999988777
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ ..++..+.+ .|.++|++||+.+.. +++++
T Consensus 174 l-~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~ 204 (213)
T cd03262 174 V-LDVMKDLAE-EGMTMVVVTHEMGFAREVADR 204 (213)
T ss_pred H-HHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 7 777777776 588999999998765 56766
No 76
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.71 E-value=2.2e-17 Score=170.33 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=99.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcccccccccc----cc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA----SI 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~~----~~ 696 (938)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 3567899999999999999999999999999998754210 011134444321 01
Q ss_pred hH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.+ ++.++.++|..+......+.+|+++++...++ +.+.+|+++|||||++|+|+....
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 164 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 11 22345556766666666778887766655555 457899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHH
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHEL 781 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el 781 (938)
.+ ..++..+.+ .|.++|++||+.++
T Consensus 165 ~~-~~~l~~~~~-~~~tili~sH~~~~ 189 (190)
T TIGR01166 165 QM-LAILRRLRA-EGMTVVISTHDVDL 189 (190)
T ss_pred HH-HHHHHHHHH-cCCEEEEEeecccc
Confidence 88 677777766 58999999999764
No 77
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.71 E-value=4.7e-17 Score=184.88 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=113.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cc----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SI---- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~---- 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ++.-.++|++.. .+
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e 96 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ 96 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence 456699999999999999999999999999999765211 111123443321 01
Q ss_pred ---------------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 ---------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ---------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
..++.++..+|+.+...+....+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~ 176 (402)
T PRK09536 97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176 (402)
T ss_pred HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 12345566677777677777888877776655555 48899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
.+ ..+++.+.+ .|.++|++||+.+++ +++++ ...+.++++...
T Consensus 177 ~l-~~lL~~l~~-~g~TIIivsHdl~~~~~~adr---------ii~l~~G~iv~~ 220 (402)
T PRK09536 177 RT-LELVRRLVD-DGKTAVAAIHDLDLAARYCDE---------LVLLADGRVRAA 220 (402)
T ss_pred HH-HHHHHHHHh-cCCEEEEEECCHHHHHHhCCE---------EEEEECCEEEEe
Confidence 88 788888876 588999999998877 68888 666666666543
No 78
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.71 E-value=4.7e-17 Score=175.44 Aligned_cols=142 Identities=17% Similarity=0.119 Sum_probs=101.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------------hhcccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------------AQVGSFVPCDRA- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------------aq~g~~vp~~~~- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .....|+|....
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 467799999999999999999999999999998764210 011134443321
Q ss_pred --cchH----------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002306 695 --SISV----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (938)
Q Consensus 695 --~~~~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd 749 (938)
..++ +..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD 176 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176 (250)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 1111 123345556655555566778877766655544 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.....+ ..+++.+.+ .|.++|++||+.+.. .++++
T Consensus 177 ~~~~~~l-~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~ 213 (250)
T PRK11264 177 PELVGEV-LNTIRQLAQ-EKRTMVIVTHEMSFARDVADR 213 (250)
T ss_pred HHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhcCE
Confidence 9888887 677777776 589999999998765 56776
No 79
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.71 E-value=3.3e-17 Score=172.25 Aligned_cols=142 Identities=21% Similarity=0.226 Sum_probs=103.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------hhcccccccccc-----cch------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------AQVGSFVPCDRA-----SIS------ 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------aq~g~~vp~~~~-----~~~------ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..+
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~ 92 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVL 92 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHH
Confidence 356689999999999999999999999999999765311 111124443211 011
Q ss_pred -------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 698 -------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 698 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
.+..++..+|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l- 171 (213)
T cd03235 93 MGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI- 171 (213)
T ss_pred hccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-
Confidence 1234556667766666677788877777655555 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
..++..+.+ .|.++|++||+.+.. +++++
T Consensus 172 ~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 172 YELLRELRR-EGMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred HHHHHHHHh-cCCEEEEEeCCHHHHHHhcCE
Confidence 666666665 589999999998765 56766
No 80
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.71 E-value=3.1e-17 Score=181.33 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=113.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cch---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SIS--- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~--- 697 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... .++
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e 94 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE 94 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH
Confidence 3467799999999999999999999999999999765210 111234443321 111
Q ss_pred ------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 698 ------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 698 ------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
.++.++..+|..+...+..+.+|++|++...+++ .+.+|+++|||||++|+|+.....+ +
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l-~ 173 (301)
T TIGR03522 95 YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-R 173 (301)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 1234556667766666777788877777655544 4889999999999999999888877 7
Q ss_pred HHHHHHHhcCCCeEEEEeCChH-HHHHhhhcccccccccccceeEEEEEEE
Q 002306 759 AICEHLVEEIRAPTLFATHFHE-LTALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
.+++.+.+ +.++|++||+++ +.++|++ ...+.++++...
T Consensus 174 ~~l~~~~~--~~tiii~sH~l~~~~~~~d~---------i~~l~~G~i~~~ 213 (301)
T TIGR03522 174 NVIKNIGK--DKTIILSTHIMQEVEAICDR---------VIIINKGKIVAD 213 (301)
T ss_pred HHHHHhcC--CCEEEEEcCCHHHHHHhCCE---------EEEEECCEEEEe
Confidence 77787754 689999999986 4568888 666777777654
No 81
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5.6e-17 Score=175.39 Aligned_cols=143 Identities=18% Similarity=0.180 Sum_probs=103.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcc-cccccccc---cchH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVG-SFVPCDRA---SISV- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g-~~vp~~~~---~~~~- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. ...+ .|+|.... ..++
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI 98 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence 466789999999999999999999999999999765210 0111 23343321 1111
Q ss_pred -----------------------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEe
Q 002306 699 -----------------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIID 742 (938)
Q Consensus 699 -----------------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllD 742 (938)
+..++..+|..+........+|+++++...+++ .+.+|+++|||
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 178 (255)
T PRK11300 99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178 (255)
T ss_pred HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 223345566666666667778877666655554 47899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
||++|+|+.....+ +.++..+.++.|+++|++||+.+.. .++++
T Consensus 179 EPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 179 EPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred CCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999999988888 7777777663489999999998765 56776
No 82
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.71 E-value=6.2e-17 Score=170.77 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=102.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cch----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SIS---- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~---- 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 466789999999999999999999999999999865311 011123443321 011
Q ss_pred -----------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 698 -----------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 698 -----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
.++.++.++|..+.+......+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~ 177 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL-RE 177 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHH-HH
Confidence 1234556677766666667777777666555544 4789999999999999999888887 67
Q ss_pred HHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++..+.+ .|+++|++||+.+.. .++++
T Consensus 178 ~l~~~~~-~~~tii~~tH~~~~~~~~~d~ 205 (218)
T cd03266 178 FIRQLRA-LGKCILFSTHIMQEVERLCDR 205 (218)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHHHhcCE
Confidence 7777765 589999999998654 56776
No 83
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.5e-17 Score=171.47 Aligned_cols=152 Identities=20% Similarity=0.149 Sum_probs=106.3
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh----------------------cccccccccc---cchHH
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----------------------VGSFVPCDRA---SISVR 699 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq----------------------~g~~vp~~~~---~~~~~ 699 (938)
..+|+++++..|++++|+|||||||||+||+||++.-... +| ||-+.++ .+++.
T Consensus 17 a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG-fvFQ~YALF~HmtVa 95 (345)
T COG1118 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG-FVFQHYALFPHMTVA 95 (345)
T ss_pred ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee-EEEechhhcccchHH
Confidence 4458999999999999999999999999999987642211 22 2222211 11122
Q ss_pred -----------------------HHHHHhcCCchhhhhcccchHHHHHHHH-HHHHhCCCCcEEEEeCCCCCCChhhHHH
Q 002306 700 -----------------------DCIFARVGAGDCQLRGVSTFMQEMLETA-SILKGATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 700 -----------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~-~il~~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
..++.-+.+.+-..+....+|++++|.. .+.+.|.+|+++|||||++++|..-+..
T Consensus 96 ~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~ 175 (345)
T COG1118 96 DNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 175 (345)
T ss_pred hhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHH
Confidence 2233334444434444556666666654 4444588999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
+ ..-+..+.++.|++++|+|||.+.+ +++++ .-.+.++.+..
T Consensus 176 l-r~wLr~~~~~~~~ttvfVTHD~eea~~ladr---------vvvl~~G~Ieq 218 (345)
T COG1118 176 L-RRWLRKLHDRLGVTTVFVTHDQEEALELADR---------VVVLNQGRIEQ 218 (345)
T ss_pred H-HHHHHHHHHhhCceEEEEeCCHHHHHhhcce---------EEEecCCeeee
Confidence 8 6777777776799999999998665 68887 55566666543
No 84
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.71 E-value=5.8e-17 Score=165.76 Aligned_cols=140 Identities=21% Similarity=0.217 Sum_probs=103.5
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH----------------------hhhhcc------------
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI----------------------LMAQVG------------ 686 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~----------------------~laq~g------------ 686 (938)
+++.+..++++.+++|+-++|+|||||||||||+.++.-. +-..+|
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~ 121 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV 121 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc
Confidence 4568888999999999999999999999999999975211 111222
Q ss_pred -----------------ccc-ccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002306 687 -----------------SFV-PCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRG 747 (938)
Q Consensus 687 -----------------~~v-p~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~g 747 (938)
.|- +.+.........++..+|+.+-..+...++|.+++++..|.++ +..|.|+|||||+.|
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G 201 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 111 1111222334457778888887888888999888887777765 789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHh-cCCCeEEEEeCChHH
Q 002306 748 TSTYDGFGLAWAICEHLVE-EIRAPTLFATHFHEL 781 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~-~~~~~~l~~TH~~el 781 (938)
+|...+..+ ...+..++. ..+.++||+||+.|.
T Consensus 202 LDl~~re~l-l~~l~~~~~~~~~~~ll~VtHh~eE 235 (257)
T COG1119 202 LDLIAREQL-LNRLEELAASPGAPALLFVTHHAEE 235 (257)
T ss_pred CChHHHHHH-HHHHHHHhcCCCCceEEEEEcchhh
Confidence 999887777 555555554 236779999999764
No 85
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4e-17 Score=178.12 Aligned_cols=152 Identities=20% Similarity=0.100 Sum_probs=110.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc----cchH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA----SISV- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~----~~~~- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..++
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 467799999999999999999999999999999765211 011134444320 0111
Q ss_pred --------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
++.++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l- 177 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL- 177 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 223455567666666667788877777665555 4889999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
..++..+++ .|+++|++||+++.. +++++ ...+.++++.
T Consensus 178 ~~~l~~~~~-~g~tili~tH~~~~~~~~~d~---------i~~l~~G~i~ 217 (274)
T PRK13647 178 MEILDRLHN-QGKTVIVATHDVDLAAEWADQ---------VIVLKEGRVL 217 (274)
T ss_pred HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 777777776 489999999998876 67887 5555555543
No 86
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.1e-17 Score=178.45 Aligned_cols=143 Identities=20% Similarity=0.140 Sum_probs=106.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc----cchH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA----SISV- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~----~~~~- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 466799999999999999999999999999999765311 111124443320 0111
Q ss_pred --------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
+..++..+|+.+.+......+|+++++...+.+ .+.+|+|+|||||++|+|+.....+
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l- 179 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV- 179 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-
Confidence 234556667776677777788877777665555 4889999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.++..+.++.|+++|++||+++....+++
T Consensus 180 ~~~l~~l~~~~~~tilivsH~~~~~~~~d~ 209 (279)
T PRK13635 180 LETVRQLKEQKGITVLSITHDLDEAAQADR 209 (279)
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence 777777776448999999999887766665
No 87
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.6e-17 Score=175.69 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=102.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh---------------cccccccccc---cchH-------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------------VGSFVPCDRA---SISV------- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq---------------~g~~vp~~~~---~~~~------- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++..... ...|+|.... ..++
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 94 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFG 94 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhH
Confidence 46679999999999999999999999999999986532100 0123443311 0111
Q ss_pred --------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002306 699 --------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (938)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (938)
+..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~ 173 (255)
T PRK11248 95 LQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTLLLK 173 (255)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHH
Confidence 234556677666566667778877766655554 4789999999999999999888887 677777
Q ss_pred HHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 764 LVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 764 l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.++.|+++|++||+.+.. .++++
T Consensus 174 ~~~~~g~tviivsH~~~~~~~~~d~ 198 (255)
T PRK11248 174 LWQETGKQVLLITHDIEEAVFMATE 198 (255)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 6543589999999998765 56776
No 88
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.9e-17 Score=171.39 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=100.0
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hcccccccccc---cchH--------
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV-------- 698 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~---~~~~-------- 698 (938)
+++|++.+|++++|+||||||||||+|+++++.-.. +.-.|+|.... ..++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 788988999999999999999999999997653110 01123333221 0111
Q ss_pred -------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
+..++.++|..+........+|+++++...+++. +.+|+++|||||++|+|+.....+ +.++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~ 174 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM-LDLVLDL 174 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHH
Confidence 2234555666655556667788777766555554 789999999999999999988888 6677777
Q ss_pred HhcCCCeEEEEeCChHHH-HHhhh
Q 002306 765 VEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.++.|+++|++||+.+.. .++++
T Consensus 175 ~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 175 HAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred HHhcCCEEEEEecCHHHHHhhhCE
Confidence 653589999999998765 56776
No 89
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.5e-17 Score=177.26 Aligned_cols=143 Identities=20% Similarity=0.123 Sum_probs=102.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhcccccccccc---cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~---~~ 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+...|+|.... ..
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 345689999999999999999999999999999765311 011124443321 11
Q ss_pred hH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.+ ++.++..+|+.+.+......+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~ 197 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 11 223455667766666667788877766655554 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ ..++..+.++.|.++|++||+.+.. .++++
T Consensus 198 ~l-~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 198 EM-QDELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 87 7777777653589999999998754 57776
No 90
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.71 E-value=2.8e-17 Score=180.50 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=113.2
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh--------cc----------cccccccc---cc---
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------VG----------SFVPCDRA---SI--- 696 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq--------~g----------~~vp~~~~---~~--- 696 (938)
+...+.+|++|++.+|+++.|.||+||||||+||+||++.-... .- .+|.+++| .+
T Consensus 16 g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHH
Confidence 34577889999999999999999999999999999997642211 00 12222221 11
Q ss_pred -------------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 697 -------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 697 -------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
..+.+.+..+++.+...+..+.+|++++|...+.+ .+.+|.++|||||.++||..-+..+
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~m 175 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHH
Confidence 12334566677777777778888877766655544 5899999999999999999999998
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
-.. ++.+.++.|.|+|++|||.+.+ .++++ ...+..+++.
T Consensus 176 r~E-lk~lq~~~giT~i~VTHDqeEAl~msDr---------I~Vm~~G~I~ 216 (352)
T COG3842 176 RKE-LKELQRELGITFVYVTHDQEEALAMSDR---------IAVMNDGRIE 216 (352)
T ss_pred HHH-HHHHHHhcCCeEEEEECCHHHHhhhccc---------eEEccCCcee
Confidence 544 4555555899999999998766 67777 5555555543
No 91
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=7.5e-17 Score=160.66 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=100.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH----------------------------hhhhcccccc-ccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI----------------------------LMAQVGSFVP-CDR 693 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~----------------------------~laq~g~~vp-~~~ 693 (938)
.-+.+++++.+.++.+++|+||+|||||||||++..+. +..++|.... +..
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 45667999999999999999999999999999975331 2223443221 011
Q ss_pred ccchHHHHH---------------------HHhcCC----chhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002306 694 ASISVRDCI---------------------FARVGA----GDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRG 747 (938)
Q Consensus 694 ~~~~~~d~i---------------------~~~~~~----~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~g 747 (938)
+..+++|++ +..-++ .|.+....-.+|++++|...|.+. |.+|+++||||||++
T Consensus 100 Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA 179 (253)
T COG1117 100 FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179 (253)
T ss_pred CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccc
Confidence 112233321 122222 344555555678888777666665 889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|||.....| ..++..|++ .-|++++||+++-+ +++|.
T Consensus 180 LDPIsT~kI-EeLi~eLk~--~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 180 LDPISTLKI-EELITELKK--KYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred cCchhHHHH-HHHHHHHHh--ccEEEEEeCCHHHHHHHhHh
Confidence 999999999 888888875 68999999998765 46665
No 92
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5.3e-17 Score=177.16 Aligned_cols=142 Identities=18% Similarity=0.132 Sum_probs=104.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc----cchH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA----SISV 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~----~~~~ 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ...-.|+|+... ..++
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 366799999999999999999999999999999765210 011124443321 1111
Q ss_pred ---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 699 ---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
+..++..+|+.+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 223455566666666667788877777666555 4889999999999999999888877
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.++..+.+ .|.++|++||+.+....+++
T Consensus 176 -~~~l~~l~~-~g~til~~tH~~~~~~~~d~ 204 (274)
T PRK13644 176 -LERIKKLHE-KGKTIVYITHNLEELHDADR 204 (274)
T ss_pred -HHHHHHHHh-CCCEEEEEecCHHHHhhCCE
Confidence 777777776 58999999999887777776
No 93
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.71 E-value=5.4e-17 Score=169.66 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=101.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhcccccccccc---cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~---~~ 696 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|+... ..
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 456689999999999999999999999999999764311 011123332211 01
Q ss_pred hH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
++ +..++.++|..+........+|+++++...+. ..+.+|+++|||||++|+|+....
T Consensus 92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~ 171 (206)
T TIGR03608 92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRD 171 (206)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHH
Confidence 11 22455666766666666677776666655544 457899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..+++.+.+ .|.++|++||+.++...+++
T Consensus 172 ~l-~~~l~~~~~-~~~tii~~sh~~~~~~~~d~ 202 (206)
T TIGR03608 172 EV-LDLLLELND-EGKTIIIVTHDPEVAKQADR 202 (206)
T ss_pred HH-HHHHHHHHh-cCCEEEEEeCCHHHHhhcCE
Confidence 87 777777765 48999999999887766654
No 94
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.1e-17 Score=171.50 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=120.2
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh------------------------hhhccccc-----------
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------------------------MAQVGSFV----------- 689 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~------------------------laq~g~~v----------- 689 (938)
..++++|++++|++++|+|++|||||||+|++-++.- ..++|+..
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV 100 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTV 100 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchH
Confidence 4568999999999999999999999999999854321 11233211
Q ss_pred ------cccccc------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q 002306 690 ------PCDRAS------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 690 ------p~~~~~------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i 756 (938)
|-+-+. -..+..++..+|+.|......+.+|++++|...|.++ |++|+++|.||+|+.|||....+|
T Consensus 101 ~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sI 180 (339)
T COG1135 101 FENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSI 180 (339)
T ss_pred HhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHH
Confidence 111011 1224467888999999999999999999888777765 899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
..++..+.++.|.|++++||-+++. ++|++ ..-+.++++.
T Consensus 181 -L~LL~~In~~lglTIvlITHEm~Vvk~ic~r---------Vavm~~G~lv 221 (339)
T COG1135 181 -LELLKDINRELGLTIVLITHEMEVVKRICDR---------VAVLDQGRLV 221 (339)
T ss_pred -HHHHHHHHHHcCCEEEEEechHHHHHHHhhh---------heEeeCCEEE
Confidence 8888889888899999999999987 58888 6666666654
No 95
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=4.6e-17 Score=182.90 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=112.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..+
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t 98 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence 456799999999999999999999999999999765310 011124443321 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+ +..++..+|+.+......+.+|+++++...+++ .+.+|+++||||||+|+|+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~ 178 (343)
T PRK11153 99 VFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 223456667766666777788877777655555 478999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
+ +.++..+.++.|.++|++||+++.. ++|++ ...+.++++..
T Consensus 179 l-~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~---------v~~l~~G~i~~ 221 (343)
T PRK11153 179 I-LELLKDINRELGLTIVLITHEMDVVKRICDR---------VAVIDAGRLVE 221 (343)
T ss_pred H-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 8 7777777654589999999998765 57887 55566666643
No 96
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.70 E-value=6.5e-17 Score=171.25 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=102.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------------hcccccccccc---cchH------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------QVGSFVPCDRA---SISV------ 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------------q~g~~vp~~~~---~~~~------ 698 (938)
.+.++++|++.+|++++|+|||||||||||++++++.... +.-.|+|.... ..++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~ 93 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKV 93 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHH
Confidence 4566899999999999999999999999999998753110 01123443321 1111
Q ss_pred -----------HHHHHHhcCCchhhhhcccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q 002306 699 -----------RDCIFARVGAGDCQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766 (938)
Q Consensus 699 -----------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~-il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~ 766 (938)
+..++.++|..+........+|+++++... +...+.+|+++|||||++|+|+.....+ +.++..+.+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~L~~~~~ 172 (223)
T TIGR03740 94 HTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL-RELIRSFPE 172 (223)
T ss_pred HHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHH-HHHHHHHHH
Confidence 234456677766666666777766666544 4445789999999999999999888888 777777765
Q ss_pred cCCCeEEEEeCChHHH-HHhhh
Q 002306 767 EIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 767 ~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.|.++|++||+.+.. .++++
T Consensus 173 -~~~tiii~sH~~~~~~~~~d~ 193 (223)
T TIGR03740 173 -QGITVILSSHILSEVQQLADH 193 (223)
T ss_pred -CCCEEEEEcCCHHHHHHhcCE
Confidence 588999999998765 57777
No 97
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=7.8e-17 Score=175.71 Aligned_cols=143 Identities=16% Similarity=0.103 Sum_probs=102.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcccccccccc----cc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA----SI 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~~----~~ 696 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .+...|+|+... ..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence 3577899999999999999999999999999999764210 011234454321 00
Q ss_pred hH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.+ ++.++..+|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~ 173 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173 (271)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 01 112444556555555566778877766655554 58899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 174 ~l-~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~ 205 (271)
T PRK13638 174 QM-IAIIRRIVA-QGNHVIISSHDIDLIYEISDA 205 (271)
T ss_pred HH-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 87 677777765 589999999998765 56776
No 98
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.70 E-value=5.2e-17 Score=172.71 Aligned_cols=140 Identities=17% Similarity=0.108 Sum_probs=99.9
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh---------------cccccccccc---cchH----------
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------------VGSFVPCDRA---SISV---------- 698 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq---------------~g~~vp~~~~---~~~~---------- 698 (938)
++++|++.+|++++|+||||||||||+|+++++..... ...++|+... ..++
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 47888889999999999999999999999976532100 0123443321 0111
Q ss_pred -------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
+..++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +.++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l-~~~l~~~ 160 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL-QEELMQI 160 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH-HHHHHHH
Confidence 223455566666566666778877766655554 4789999999999999999988888 6666666
Q ss_pred HhcCCCeEEEEeCChHH-HHHhhh
Q 002306 765 VEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
.++.|+++|++||+++. .+++++
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~ 184 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDR 184 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCE
Confidence 55358899999999875 457776
No 99
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.70 E-value=4.4e-17 Score=182.94 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=113.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------h----hhccccccccccc---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------M----AQVGSFVPCDRAS--- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------l----aq~g~~vp~~~~~--- 695 (938)
..+.++++|++.+|++++|+||||||||||||+++++.. + .+.-.|||+...-
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 345679999999999999999999999999999975431 0 1112344433211
Q ss_pred ch---------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 696 IS---------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 696 ~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
.+ .+..++..+|+.+......+.+|++++|...+++ .+.+|+++|||||++|+||...
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11 1234566778877777778889988877766555 4889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhhcccccccccccceeEEEEE
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
..+ ...+..+.++.|.++||+||+++. ..++++ ...+.++++.
T Consensus 166 ~~l-~~~l~~l~~~~~~Tii~vTHd~~ea~~~~dr---------I~vl~~G~iv 209 (363)
T TIGR01186 166 DSM-QDELKKLQATLQKTIVFITHDLDEAIRIGDR---------IVIMKAGEIV 209 (363)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEeCCEEE
Confidence 988 566666665458999999999875 578887 6666666654
No 100
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.70 E-value=5.2e-17 Score=182.56 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=113.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hccccccccccc---c------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRAS---I------ 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~~---~------ 696 (938)
.+.++++|++.+|++++|+||||||||||||+|+++.-.. ....||++..+- +
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 4567899999999999999999999999999998753210 111244433211 1
Q ss_pred ---------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 697 ---------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 697 ---------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
..++.++..+|+.+...+....+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l-~~~ 176 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL-RTE 176 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 12345667777777777777888877766655554 5889999999999999999999988 666
Q ss_pred HHHHHhcCCCeEEEEeCChHH-HHHhhhcccccccccccceeEEEEEE
Q 002306 761 CEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el-~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
++.+.++.|.++|++||+.+. ..++++ ...+.++++..
T Consensus 177 L~~l~~~~~~tvi~vTHd~~ea~~l~d~---------i~vl~~G~i~~ 215 (353)
T TIGR03265 177 IRQLQRRLGVTTIMVTHDQEEALSMADR---------IVVMNHGVIEQ 215 (353)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 666665468999999999875 468887 55566666654
No 101
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.70 E-value=7.1e-17 Score=171.82 Aligned_cols=143 Identities=18% Similarity=0.159 Sum_probs=99.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhccccccccccc---chHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRAS---ISVR 699 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~~---~~~~ 699 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|....- ..+.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 456699999999999999999999999999999765311 1112345544311 1111
Q ss_pred ------------------HHHHHhcC-CchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 700 ------------------DCIFARVG-AGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 700 ------------------d~i~~~~~-~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
..++..++ ..+......+.+|+++++...+. ..+.+|+++|||||++|+|+.....+ +.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l-~~ 172 (230)
T TIGR03410 94 ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GR 172 (230)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH-HH
Confidence 12233333 23334445566776666655554 45789999999999999999988888 67
Q ss_pred HHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
++..+.++.++++|++||+.+... ++++
T Consensus 173 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 201 (230)
T TIGR03410 173 VIRRLRAEGGMAILLVEQYLDFARELADR 201 (230)
T ss_pred HHHHHHHcCCcEEEEEeCCHHHHHHhCCE
Confidence 777776534899999999987654 6776
No 102
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.2e-17 Score=177.26 Aligned_cols=143 Identities=18% Similarity=0.148 Sum_probs=106.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc----cc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA----SI-- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~----~~-- 696 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|.... ..
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 577899999999999999999999999999999754210 111234444321 00
Q ss_pred -------------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 697 -------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 697 -------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
..++.++.++|+.+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l 183 (280)
T PRK13633 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREV 183 (280)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 01234456667776677777888877777655555 4789999999999999999998888
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.++..+.++.|+++|++||+++....+++
T Consensus 184 -~~~l~~l~~~~g~tillvtH~~~~~~~~d~ 213 (280)
T PRK13633 184 -VNTIKELNKKYGITIILITHYMEEAVEADR 213 (280)
T ss_pred -HHHHHHHHHhcCCEEEEEecChHHHhcCCE
Confidence 777777765358999999999887765665
No 103
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.70 E-value=6.1e-17 Score=171.09 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=100.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cch----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SIS---- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~---- 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..+
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 95 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREH 95 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHH
Confidence 456689999999999999999999999999999765311 001123443211 011
Q ss_pred -----------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 698 -----------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 698 -----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
.++.++..++..+......+++|+++++...+. ..+.+|+++|||||++|+|+.....+ ..
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l-~~ 174 (220)
T cd03263 96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI-WD 174 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH-HH
Confidence 122445666766655666677876666655544 45899999999999999999888877 67
Q ss_pred HHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+++.+.+ +.++|++||+++.. .++++
T Consensus 175 ~l~~~~~--~~tii~~sH~~~~~~~~~d~ 201 (220)
T cd03263 175 LILEVRK--GRSIILTTHSMDEAEALCDR 201 (220)
T ss_pred HHHHHhc--CCEEEEEcCCHHHHHHhcCE
Confidence 7777764 58999999998876 46776
No 104
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.70 E-value=1e-16 Score=169.58 Aligned_cols=142 Identities=14% Similarity=0.139 Sum_probs=98.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc---cchHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SISVR 699 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~---~~~~~ 699 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 355689999999999999999999999999998754210 011124443321 11111
Q ss_pred H-------------------HHHHhc-CCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 700 D-------------------CIFARV-GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 700 d-------------------~i~~~~-~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
+ .++..+ +..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~ 172 (222)
T cd03224 94 ENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI-F 172 (222)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-H
Confidence 1 223333 2334444555667777666655554 4789999999999999999888887 7
Q ss_pred HHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 759 AICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
.++..+.+ .|+++|++||+.+. ..++++
T Consensus 173 ~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 201 (222)
T cd03224 173 EAIRELRD-EGVTILLVEQNARFALEIADR 201 (222)
T ss_pred HHHHHHHH-CCCEEEEEeCCHHHHHHhccE
Confidence 77777776 58999999999875 467776
No 105
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=3.3e-17 Score=167.61 Aligned_cols=146 Identities=21% Similarity=0.195 Sum_probs=105.9
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccc--------c----
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGS--------F---- 688 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~--------~---- 688 (938)
++--..|+++|++.+|++++|+|||||||||++++|.+... .++.|. .
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC
Confidence 34457789999999999999999999999999999854311 011110 0
Q ss_pred ---------------------ccc----ccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEe
Q 002306 689 ---------------------VPC----DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIID 742 (938)
Q Consensus 689 ---------------------vp~----~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllD 742 (938)
.|. +.........++.++|+.+......+.++.+.++...|.+ .|++|.|+|||
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLD 174 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD 174 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEec
Confidence 000 0011112234666778777777777777766555555444 58999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
||.+|+++.+...+ ..++..+.++.|.+++++-|++.+. .+|++
T Consensus 175 EPaAGln~~e~~~l-~~~i~~i~~~~g~tillIEHdM~~Vm~l~dr 219 (250)
T COG0411 175 EPAAGLNPEETEEL-AELIRELRDRGGVTILLIEHDMKLVMGLADR 219 (250)
T ss_pred CccCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEEeccHHHhhhccE
Confidence 99999999999999 6777788875679999999999876 68877
No 106
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.70 E-value=4.8e-17 Score=165.15 Aligned_cols=134 Identities=14% Similarity=0.040 Sum_probs=90.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccc-cccccc-ccchHHHHHHHhc------------CCc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS-FVPCDR-ASISVRDCIFARV------------GAG 709 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~-~vp~~~-~~~~~~d~i~~~~------------~~~ 709 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... -|. .+.... ..... ..+..++ ...
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~tv~ 93 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDP-NELGDHVGYLPQDDELFSGSIA 93 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCH-HHHHhheEEECCCCccccCcHH
Confidence 3566889999999999999999999999999998764221 221 111000 00000 0011111 111
Q ss_pred hhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 710 DCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 710 d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+++ +|+++++. +.+...+++|+++|||||++|+|+.....+ ..++..+.+ .|.++|++||+.+....+++
T Consensus 94 ~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l-~~~l~~~~~-~~~tii~~sh~~~~~~~~d~ 164 (173)
T cd03246 94 ENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL-NQAIAALKA-AGATRIVIAHRPETLASADR 164 (173)
T ss_pred HHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHhCCE
Confidence 222 55555554 444455899999999999999999988888 667777765 58999999999887766665
No 107
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=7.1e-17 Score=173.05 Aligned_cols=142 Identities=18% Similarity=0.141 Sum_probs=101.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc---cchH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SISV- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~---~~~~- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..++
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVY 96 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHH
Confidence 567799999999999999999999999999999765211 011124443321 0111
Q ss_pred ---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 699 ---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
++.++..+|..+........+|+++++...+. ..+.+|+++|||||++|+|+.....+
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 176 (241)
T PRK10895 97 DNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176 (241)
T ss_pred HHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 23344555655555555667777776655544 45789999999999999999888877
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChH-HHHHhhh
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~e-l~~~~~~ 787 (938)
+.+++.+.+ .|.++|++||+.+ +..++++
T Consensus 177 -~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~ 206 (241)
T PRK10895 177 -KRIIEHLRD-SGLGVLITDHNVRETLAVCER 206 (241)
T ss_pred -HHHHHHHHh-cCCEEEEEEcCHHHHHHhcCE
Confidence 677777775 5899999999985 5567776
No 108
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.70 E-value=3e-17 Score=179.21 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=107.8
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh------------------cccccccccc---cchHH----
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------VGSFVPCDRA---SISVR---- 699 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq------------------~g~~vp~~~~---~~~~~---- 699 (938)
+.++++|++.+|++++|+|||||||||+||+||++.-... --.+|++..+ .+++.
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 7789999999999999999999999999999997642211 0012333322 12222
Q ss_pred -----------------HHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002306 700 -----------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (938)
Q Consensus 700 -----------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il 761 (938)
..+...+++.+.+.+..+.+|++.+|...+.+ .+.+|+++|||||.+.||..-+..+ ..-+
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~m-r~ei 176 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM-RSEI 176 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHH-HHHH
Confidence 23455677888888888999987776655554 4789999999999999999999888 5556
Q ss_pred HHHHhcCCCeEEEEeCCh-HHHHHhhh
Q 002306 762 EHLVEEIRAPTLFATHFH-ELTALAHE 787 (938)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~-el~~~~~~ 787 (938)
..++++.|.|+|++|||. |...++++
T Consensus 177 ~~lh~~l~~T~IYVTHDq~EAmtladr 203 (338)
T COG3839 177 KKLHERLGTTTIYVTHDQVEAMTLADR 203 (338)
T ss_pred HHHHHhcCCcEEEEcCCHHHHHhhCCE
Confidence 667777899999999995 55568877
No 109
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.3e-17 Score=183.30 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=105.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hcccccccccc---cchH----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV---- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~---~~~~---- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-.. ..-.|+|+... .+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni 96 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENM 96 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHH
Confidence 4677999999999999999999999999999998753110 01124443321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
+..++..+|+.+...+..+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l-~~~ 175 (369)
T PRK11000 97 SFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-RIE 175 (369)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHH
Confidence 234556677776666777788877776655554 4789999999999999999988888 666
Q ss_pred HHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 761 CEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
++.+.++.|.++|++||+.+. ..++++
T Consensus 176 L~~l~~~~g~tvI~vTHd~~~~~~~~d~ 203 (369)
T PRK11000 176 ISRLHKRLGRTMIYVTHDQVEAMTLADK 203 (369)
T ss_pred HHHHHHHhCCEEEEEeCCHHHHHHhCCE
Confidence 677765458999999999865 467877
No 110
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=5.9e-17 Score=177.50 Aligned_cols=143 Identities=17% Similarity=0.114 Sum_probs=105.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-----------------------cccccccccc----cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----------------------VGSFVPCDRA----SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-----------------------~g~~vp~~~~----~~ 696 (938)
.+.++++|++.+|++++|+||||||||||+|+++++....+ ...|+|.... ..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 46779999999999999999999999999999987642211 1124443321 11
Q ss_pred hH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.+ ++.++..+|+.+........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~ 180 (282)
T PRK13640 101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180 (282)
T ss_pred CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 11 223455566666666667778877766655554 48899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..++..+.++.|.++|++||+++....+++
T Consensus 181 ~l-~~~l~~l~~~~g~tvli~tH~~~~~~~~d~ 212 (282)
T PRK13640 181 QI-LKLIRKLKKKNNLTVISITHDIDEANMADQ 212 (282)
T ss_pred HH-HHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 88 667777765358999999999888777766
No 111
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.70 E-value=9.5e-17 Score=171.98 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=102.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcccccccccc---cchH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA---SISV 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~~---~~~~ 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ...+
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 467799999999999999999999999999999764210 011123443221 0111
Q ss_pred ----------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 699 ----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 699 ----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 123456667666666667788877766655554 478999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 175 l-~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 205 (240)
T PRK09493 175 V-LKVMQDLAE-EGMTMVIVTHEIGFAEKVASR 205 (240)
T ss_pred H-HHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 8 667777765 589999999998766 56776
No 112
>PRK10908 cell division protein FtsE; Provisional
Probab=99.70 E-value=7.9e-17 Score=170.46 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=102.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ...
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 466799999999999999999999999999999754210 011124443321 011
Q ss_pred H---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+ ++.++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (222)
T PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175 (222)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 1 124556666666666667788877777655555 478999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ +.++..+.+ .+.++|++||+++.. .++++
T Consensus 176 l-~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 206 (222)
T PRK10908 176 I-LRLFEEFNR-VGVTVLMATHDIGLISRRSYR 206 (222)
T ss_pred H-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 8 666677765 488999999998765 46665
No 113
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.70 E-value=7.3e-17 Score=181.67 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=113.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-cc-------------------ccccccccc---ch---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VG-------------------SFVPCDRAS---IS--- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-~g-------------------~~vp~~~~~---~~--- 697 (938)
.+.++++|++..|++++|+||||||||||||+++++..... .| .||++..+- ++
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e 98 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED 98 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence 46779999999999999999999999999999987542211 01 133332211 11
Q ss_pred ------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 698 ------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 698 ------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
.++.++..+|+.+...+....+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +
T Consensus 99 nl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l-~ 177 (362)
T TIGR03258 99 NVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM-R 177 (362)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH-H
Confidence 1334566677777777777888877776655554 4889999999999999999998888 6
Q ss_pred HHHHHHHhcC-CCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 759 AICEHLVEEI-RAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 759 ~il~~l~~~~-~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
..+..+.++. |.++|++||+++.+ .++++ ...+.++++..
T Consensus 178 ~~l~~l~~~~~g~til~vTHd~~ea~~l~dr---------i~vl~~G~i~~ 219 (362)
T TIGR03258 178 EEIAALHEELPELTILCVTHDQDDALTLADK---------AGIMKDGRLAA 219 (362)
T ss_pred HHHHHHHHhCCCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 7777777644 79999999998664 67887 55566666543
No 114
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.69 E-value=8e-17 Score=175.37 Aligned_cols=144 Identities=21% Similarity=0.174 Sum_probs=102.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---cc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SI 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~~ 696 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .+...|+|.... ..
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 3567799999999999999999999999999999765311 111124443321 11
Q ss_pred hHHH----------------------HHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 697 SVRD----------------------CIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 697 ~~~d----------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
.+.+ .++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 179 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 1111 2345566655556666788877777666555 4789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
..+ ..++..+.++.|.++|++||+.+.. .++++
T Consensus 180 ~~l-~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 213 (269)
T PRK11831 180 GVL-VKLISELNSALGVTCVVVSHDVPEVLSIADH 213 (269)
T ss_pred HHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhhCE
Confidence 877 6666777653489999999997654 56766
No 115
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.7e-17 Score=164.60 Aligned_cols=129 Identities=20% Similarity=0.263 Sum_probs=90.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccc--------------------ccccccccchHHHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS--------------------FVPCDRASISVRDCIF 703 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~--------------------~vp~~~~~~~~~d~i~ 703 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .-|. |+|++. .++
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~-------~~~ 85 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEP-------SLY 85 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecCC-------ccc
Confidence 456789999999999999999999999999999875321 1121 122111 011
Q ss_pred HhcCCchhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH
Q 002306 704 ARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (938)
Q Consensus 704 ~~~~~~d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~ 782 (938)
..+...+++. +|+++++. +.+...+.+|+++|+|||++|+|+.....+ ..+++.+.+ .|.++|++||+.+..
T Consensus 86 ~~~tv~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~-~g~tiii~th~~~~~ 158 (173)
T cd03230 86 ENLTVRENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF-WELLRELKK-EGKTILLSSHILEEA 158 (173)
T ss_pred cCCcHHHHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHH-CCCEEEEECCCHHHH
Confidence 1112222222 55555544 445555889999999999999999988888 677777776 488999999998765
Q ss_pred H-Hhhh
Q 002306 783 A-LAHE 787 (938)
Q Consensus 783 ~-~~~~ 787 (938)
. ++++
T Consensus 159 ~~~~d~ 164 (173)
T cd03230 159 ERLCDR 164 (173)
T ss_pred HHhCCE
Confidence 4 6665
No 116
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.9e-17 Score=172.76 Aligned_cols=142 Identities=21% Similarity=0.151 Sum_probs=106.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh----------------------ccccccccc----c---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----------------------VGSFVPCDR----A--- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq----------------------~g~~vp~~~----~--- 694 (938)
.+.+++++++.+|+.++|+|||||||||++++++++..... +| +|.+.. .
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG-~VfQnpd~q~~~~t 96 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG-LVFQNPDDQLFGPT 96 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE-EEEECcccccccCc
Confidence 56679999999999999999999999999999876542221 12 111100 0
Q ss_pred ------------------cchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHH
Q 002306 695 ------------------SISVRDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 695 ------------------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
....++..+..+|..+...+....+|++.+|...|. ..|.+|.++||||||+|+||.....
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence 011234566778888888888888886665554444 4589999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ ..++..+.++.|.++|++||+++.. .++++
T Consensus 177 l-~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~ 208 (235)
T COG1122 177 L-LELLKKLKEEGGKTIIIVTHDLELVLEYADR 208 (235)
T ss_pred H-HHHHHHHHhcCCCeEEEEeCcHHHHHhhCCE
Confidence 7 8888888875579999999998766 45776
No 117
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=8.9e-17 Score=177.52 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=104.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------------------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------------------------- 682 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------------------------- 682 (938)
.+.++++|++.+|++++|+||||||||||+|+++++...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 467799999999999999999999999999999765211
Q ss_pred ---hhccccccccc----ccchH---------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-h
Q 002306 683 ---AQVGSFVPCDR----ASISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-G 732 (938)
Q Consensus 683 ---aq~g~~vp~~~----~~~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~ 732 (938)
.+.-.|||+.. ....+ +..++..+|+. +........+|+++++...+.+ .
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 00113455431 00011 23456667775 5566677788877777655554 4
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 733 a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+.+|+++|||||++|+|+.....+ +.++..+.+ .|.++|++||+.+. ..++++
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNK-QGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeeCHHHHHHhCCE
Confidence 789999999999999999877777 778888876 58999999999875 467877
No 118
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.4e-16 Score=173.26 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=103.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc---ch--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS---IS-- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~---~~-- 697 (938)
..+.++++|++.+|++++|+||||||||||||+++++.-. ...-.|+|+.... ..
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 99 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQ 99 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHH
Confidence 3577899999999999999999999999999999765210 0011233332110 01
Q ss_pred -----------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 698 -----------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 698 -----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
.++.++..+|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 179 (265)
T PRK10253 100 ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQ 179 (265)
T ss_pred HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 1234455566666666667778877766655554 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
..+ ..++..+.++.|.++|++||+.+. ..++++
T Consensus 180 ~~l-~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~ 213 (265)
T PRK10253 180 IDL-LELLSELNREKGYTLAAVLHDLNQACRYASH 213 (265)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 888 666677765348899999999874 467776
No 119
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.69 E-value=7.1e-17 Score=173.68 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=104.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh---------cccccccccc---cc--h------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------VGSFVPCDRA---SI--S------------ 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq---------~g~~vp~~~~---~~--~------------ 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++..... .-.|+|+... .+ .
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~ 97 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTK 97 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccccc
Confidence 46668999999999999999999999999999987532110 1124443321 00 1
Q ss_pred --HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEE
Q 002306 698 --VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLF 774 (938)
Q Consensus 698 --~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~ 774 (938)
.+..++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++..+.++.|+++|+
T Consensus 98 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~g~tiii 176 (251)
T PRK09544 98 KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL-YDLIDQLRRELDCAVLM 176 (251)
T ss_pred HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHHhcCCEEEE
Confidence 1234456677777677777888877766655554 4789999999999999999888887 66666666534899999
Q ss_pred EeCChHHH-HHhhh
Q 002306 775 ATHFHELT-ALAHE 787 (938)
Q Consensus 775 ~TH~~el~-~~~~~ 787 (938)
+||+.+.. .++++
T Consensus 177 vsH~~~~i~~~~d~ 190 (251)
T PRK09544 177 VSHDLHLVMAKTDE 190 (251)
T ss_pred EecCHHHHHHhCCE
Confidence 99998765 56765
No 120
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7.6e-17 Score=176.39 Aligned_cols=143 Identities=19% Similarity=0.155 Sum_probs=105.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc----cchH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA----SISV- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~----~~~~- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ..++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 467799999999999999999999999999999765311 011124444321 0111
Q ss_pred --------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
+..++..+|+.+........+|+++++...+. +.+.+|+++|||||++|+|+.....+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l- 179 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL- 179 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-
Confidence 23455666777666777788887766655544 45889999999999999999888877
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..++..+.++.|.++|++||+.+....+++
T Consensus 180 ~~~l~~l~~~~g~tilivtH~~~~~~~~dr 209 (279)
T PRK13650 180 IKTIKGIRDDYQMTVISITHDLDEVALSDR 209 (279)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 777777776358999999999887777776
No 121
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=8e-17 Score=169.05 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=100.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cchH---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SISV--- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~~--- 698 (938)
.+.++++|++.+| +++|+||||||||||||+++++... .+.-.|+|++.. ..++
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 4567899999999 9999999999999999999865210 111124444321 0111
Q ss_pred ------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 699 ------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 699 ------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
++.++..+|..+........+|+++++...+. +.+.+|+++|||||++|+|+.....+ ..
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~ 171 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF-RN 171 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HH
Confidence 22345556666555566677777666655544 45889999999999999999888887 77
Q ss_pred HHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+++.+.+ +.++|++||+.+.. +++++
T Consensus 172 ~l~~~~~--~~tii~vsH~~~~~~~~~d~ 198 (211)
T cd03264 172 LLSELGE--DRIVILSTHIVEDVESLCNQ 198 (211)
T ss_pred HHHHHhC--CCEEEEEcCCHHHHHHhCCE
Confidence 7787765 48999999998765 56776
No 122
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1e-16 Score=176.11 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=104.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhccccccccc----cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDR----AS 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~----~~ 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|... ..
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 467799999999999999999999999999999765210 01113444432 01
Q ss_pred chH---------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 696 ISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 696 ~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
..+ +..++..+|.. +......+.+|+++++...+++ .+.+|+++|||||++|+|+..
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 111 22345556665 4456667788877777655555 478999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
...+ ..++..+.+ .|.++|++||+++.. .+|++
T Consensus 181 ~~~l-~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~ 214 (287)
T PRK13641 181 RKEM-MQLFKDYQK-AGHTVILVTHNMDDVAEYADD 214 (287)
T ss_pred HHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 8887 777787775 589999999998865 57777
No 123
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.69 E-value=1.2e-16 Score=169.41 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=102.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--ch---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--IS--- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~--- 697 (938)
..+.++++|++.+|++++|+||||||||||+|+++++... .+..+|+|....- .+
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 99 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYD 99 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHH
Confidence 3577899999999999999999999999999999865310 1112344433210 01
Q ss_pred ----------------HHHHHHHhcCCch-hhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 698 ----------------VRDCIFARVGAGD-CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 698 ----------------~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
.+..++..+|..+ ........+|+++++...+. ..+.+|+++|||||++|+|+.....+ ..
T Consensus 100 nl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~ 178 (225)
T PRK10247 100 NLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV-NE 178 (225)
T ss_pred HHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HH
Confidence 1234556677643 45566677776666655444 45889999999999999999887777 66
Q ss_pred HHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
++..+.++.|.++|++||+.+....+++
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~~~~d~ 206 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEINHADK 206 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHHHhCCE
Confidence 6666655358999999999887766655
No 124
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.69 E-value=1.2e-16 Score=173.35 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=103.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------------------------hcccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------------QVGSFVPCDRA- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------------------------q~g~~vp~~~~- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-.. +.-.|+|....
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 4667999999999999999999999999999998754210 01134443321
Q ss_pred --cchH-----------------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEe
Q 002306 695 --SISV-----------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIID 742 (938)
Q Consensus 695 --~~~~-----------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllD 742 (938)
..++ +..++.++|..+........+|+++++...+. ..+.+|+++|||
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (262)
T PRK09984 98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177 (262)
T ss_pred ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEec
Confidence 0111 22345556666656666677887666655554 457899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
||++|+|+.....+ ..+++.+.++.|.++|++||+.+. ..++++
T Consensus 178 EPt~~LD~~~~~~l-~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 178 EPIASLDPESARIV-MDTLRDINQNDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred CccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999999988888 677777765358999999999875 567776
No 125
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.69 E-value=1.4e-16 Score=154.63 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=112.4
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccc---------ccccc------------c-----------
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV---------PCDRA------------S----------- 695 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~v---------p~~~~------------~----------- 695 (938)
.+++.+..|++++|+||+||||||||+.||+....++....+ |++.. .
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 345566889999999999999999999999876544322211 22210 0
Q ss_pred ----------chHHHHHHHhcCCchhhhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 696 ----------ISVRDCIFARVGAGDCQLRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 696 ----------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
-..++.+..++|..+...+-..++|++.+| ++.+.+...++.++|||||++.+||.-+..+ .+++..+
T Consensus 97 ~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM-l~Lv~~l 175 (231)
T COG3840 97 SPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM-LALVSQL 175 (231)
T ss_pred CcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH-HHHHHHH
Confidence 112445677788777777777777766555 4555556889999999999999999999888 7788888
Q ss_pred HhcCCCeEEEEeCChHH-HHHhhhcccccccccccceeEEEEEEE
Q 002306 765 VEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~el-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
+.+.+.|++++||.++- ..++++ ...+.++++.+.
T Consensus 176 ~~E~~~TllmVTH~~~Da~~ia~~---------~~fl~~Gri~~~ 211 (231)
T COG3840 176 CDERKMTLLMVTHHPEDAARIADR---------VVFLDNGRIAAQ 211 (231)
T ss_pred HHhhCCEEEEEeCCHHHHHHhhhc---------eEEEeCCEEEee
Confidence 88789999999999754 467777 667778877664
No 126
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.69 E-value=9.9e-17 Score=170.65 Aligned_cols=141 Identities=14% Similarity=0.049 Sum_probs=98.5
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---hc-------------------ccccccccc-----cchH
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---QV-------------------GSFVPCDRA-----SISV 698 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---q~-------------------g~~vp~~~~-----~~~~ 698 (938)
.++++|++.+|++++|+||||||||||+|+++++.... .- -.|+|.+.. ...+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 46889999999999999999999999999998765320 11 123333321 0111
Q ss_pred ---------------------HHHHHHhcCCc---hhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhH
Q 002306 699 ---------------------RDCIFARVGAG---DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 699 ---------------------~d~i~~~~~~~---d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~ 753 (938)
+..++.++|.. +......+.+|+++++...+. ..+.+|+++|||||++|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 12234445554 234455667776666655544 45789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
..+ ..++..+.++.|+++|++||+.+.. .++++
T Consensus 162 ~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 195 (230)
T TIGR02770 162 ARV-LKLLRELRQLFGTGILLITHDLGVVARIADE 195 (230)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 877 6666666653488999999998765 57776
No 127
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7.9e-17 Score=172.23 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=98.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---------------------hhhcccccccccc---cchH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDRA---SISV 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------laq~g~~vp~~~~---~~~~ 698 (938)
..+.++++|++.+|++++|+||||||||||||+++++.. ..+.-.|+|.... ..++
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV 97 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence 356779999999999999999999999999999976421 0111224443321 1122
Q ss_pred HH-------------------HHHHhc-CCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 699 RD-------------------CIFARV-GAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 699 ~d-------------------~i~~~~-~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
.+ .++..+ +..+......+++|+++++...+. ..+.+|+++|||||++|+|+.....+
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l- 176 (237)
T PRK11614 98 EENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI- 176 (237)
T ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH-
Confidence 22 222333 233333445556776665554444 45789999999999999999887777
Q ss_pred HHHHHHHHhcCCCeEEEEeCChH-HHHHhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~e-l~~~~~~ 787 (938)
+.++..+.+ .|.++|++||+.+ +.+++++
T Consensus 177 ~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 177 FDTIEQLRE-QGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred HHHHHHHHH-CCCEEEEEeCcHHHHHhhCCE
Confidence 777777776 5899999999976 5577777
No 128
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.69 E-value=8.3e-17 Score=181.87 Aligned_cols=154 Identities=14% Similarity=0.088 Sum_probs=112.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hcccccccccc---cchH----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV---- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~---~~~~---- 698 (938)
.+.++++|++.+|++++|+||||||||||||+|+++.-.. ....|+++..+ .+++
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 107 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENV 107 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHH
Confidence 4677899999999999999999999999999998753211 00123333321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
++.++..+|+.+.+.+...++|++++|...+.+ .+.+|+++|||||++|+|+.....+ ...
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l-~~~ 186 (375)
T PRK09452 108 AFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM-QNE 186 (375)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH-HHH
Confidence 234556677777777777888877666555554 5889999999999999999988888 667
Q ss_pred HHHHHhcCCCeEEEEeCChHH-HHHhhhcccccccccccceeEEEEEE
Q 002306 761 CEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el-~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
++.+.++.|.++|++||+++. ..++++ ...+.++++..
T Consensus 187 L~~l~~~~g~tiI~vTHd~~ea~~laDr---------i~vl~~G~i~~ 225 (375)
T PRK09452 187 LKALQRKLGITFVFVTHDQEEALTMSDR---------IVVMRDGRIEQ 225 (375)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 777766468999999999765 468887 55566666643
No 129
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.1e-16 Score=179.79 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=112.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh------------------ccccccccccc---ch----
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------VGSFVPCDRAS---IS---- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq------------------~g~~vp~~~~~---~~---- 697 (938)
..+.++++|++.+|++++|+||||||||||||+|+++.-... .-.+|++..+- +.
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eN 98 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGEN 98 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHH
Confidence 346779999999999999999999999999999986532110 01233333211 11
Q ss_pred -----------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 698 -----------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 698 -----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
.++.++..+|..+...+..+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..
T Consensus 99 i~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l-~~ 177 (351)
T PRK11432 99 VGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM-RE 177 (351)
T ss_pred HHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH-HH
Confidence 1234556677766666677788877766655544 5889999999999999999999998 66
Q ss_pred HHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 760 ICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.+..+.++.|.++|++||+.+.+ .++++ ...+.++++..
T Consensus 178 ~l~~l~~~~g~tii~vTHd~~e~~~laD~---------i~vm~~G~i~~ 217 (351)
T PRK11432 178 KIRELQQQFNITSLYVTHDQSEAFAVSDT---------VIVMNKGKIMQ 217 (351)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 77777664689999999998665 78887 55566666644
No 130
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.9e-16 Score=169.81 Aligned_cols=143 Identities=21% Similarity=0.188 Sum_probs=101.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cchH--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISV-- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~~-- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ...-.|+|.... ..++
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 355688999999999999999999999999999764210 011124443321 0111
Q ss_pred -------------------HHHHHHhcCCch--hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 699 -------------------RDCIFARVGAGD--CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 699 -------------------~d~i~~~~~~~d--~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
+..++.++|... ......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 174 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 223456666653 455556778877766655554 4789999999999999999887777
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
..++..+.++.|+++|++||+.+. ..++++
T Consensus 175 -~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~ 205 (242)
T cd03295 175 -QEEFKRLQQELGKTIVFVTHDIDEAFRLADR 205 (242)
T ss_pred -HHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 677777765348999999999875 457776
No 131
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=171.32 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=101.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccccc--h----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--S---- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~~--~---- 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|....-+ .
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDN 96 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHH
Confidence 466799999999999999999999999999999765311 01112344332100 0
Q ss_pred -------------HHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q 002306 698 -------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (938)
Q Consensus 698 -------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~ 762 (938)
.+..++.++|.. +........+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++.
T Consensus 97 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 175 (241)
T PRK14250 97 IEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII-EELIV 175 (241)
T ss_pred HhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHH
Confidence 123455667775 3445566677766666555444 5789999999999999999877777 67777
Q ss_pred HHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 763 HLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 763 ~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+.++.|.++|++||+.+.. .++++
T Consensus 176 ~~~~~~g~tii~~sH~~~~~~~~~d~ 201 (241)
T PRK14250 176 KLKNKMNLTVIWITHNMEQAKRIGDY 201 (241)
T ss_pred HHHHhCCCEEEEEeccHHHHHHhCCE
Confidence 77653489999999998764 57776
No 132
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=9.5e-17 Score=175.01 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=103.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc----cchH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA----SISV 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~----~~~~ 698 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|.... ..++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 101 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATV 101 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccH
Confidence 3577899999999999999999999999999999865311 111134554321 1111
Q ss_pred ---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 699 ---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
+..++.++|+.+.+......+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l 181 (271)
T PRK13632 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181 (271)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 223445566666666666778877766655554 4789999999999999999888877
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+++.+.++.+.++|++||+.+....+++
T Consensus 182 -~~~l~~~~~~~~~tiii~sH~~~~~~~~d~ 211 (271)
T PRK13632 182 -KKIMVDLRKTRKKTLISITHDMDEAILADK 211 (271)
T ss_pred -HHHHHHHHHhcCcEEEEEEechhHHhhCCE
Confidence 677777765335899999999887766665
No 133
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.69 E-value=1.3e-16 Score=169.46 Aligned_cols=143 Identities=20% Similarity=0.143 Sum_probs=99.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc-----c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA-----S 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~-----~ 695 (938)
.+.++++|++.+|++++|+|||||||||||++++++... ...-.|+|.... .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 466799999999999999999999999999999764210 001123333320 1
Q ss_pred chHHH-----------------------HHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002306 696 ISVRD-----------------------CIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (938)
Q Consensus 696 ~~~~d-----------------------~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~ 750 (938)
.++.+ .++..++.. +........+|+++++...+++ .+.+|+++|||||++|+|+
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 178 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 11111 233455553 3345555677777666655554 5789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
.....+ ..++..+.++.|.++|++||+.+... ++++
T Consensus 179 ~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 215 (228)
T cd03257 179 SVQAQI-LDLLKKLQEELGLTLLFITHDLGVVAKIADR 215 (228)
T ss_pred HHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 888887 66666666534899999999987664 7776
No 134
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.69 E-value=1.4e-16 Score=170.99 Aligned_cols=152 Identities=20% Similarity=0.160 Sum_probs=103.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-hhh---------------------hc-cccccccccc---ch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LMA---------------------QV-GSFVPCDRAS---IS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~la---------------------q~-g~~vp~~~~~---~~ 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++. ... .. -.|+|+.... ..
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS 93 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence 4566899999999999999999999999999998762 000 11 1244433210 00
Q ss_pred ----------------------------HHHHHHHhcCCch-hhhhccc-chHHHHHHHHHHH-HhCCCCcEEEEeCCCC
Q 002306 698 ----------------------------VRDCIFARVGAGD-CQLRGVS-TFMQEMLETASIL-KGATDRSLIIIDELGR 746 (938)
Q Consensus 698 ----------------------------~~d~i~~~~~~~d-~~~~~~s-~f~~e~~~~~~il-~~a~~~slvllDEp~~ 746 (938)
.+..++.++|..+ ....... .+|+++++...++ ..+.+|+++|||||++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 173 (243)
T TIGR01978 94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173 (243)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 1123344456543 2334444 4777666655544 4588999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-H-hhhcccccccccccceeEEEEE
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-L-AHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~-~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
|+|+.....+ ..++..+.+ .|.++|++||+.+... + +++ ...+.++++.
T Consensus 174 ~LD~~~~~~l-~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~---------i~~l~~G~i~ 224 (243)
T TIGR01978 174 GLDIDALKIV-AEGINRLRE-PDRSFLIITHYQRLLNYIKPDY---------VHVLLDGRIV 224 (243)
T ss_pred cCCHHHHHHH-HHHHHHHHH-CCcEEEEEEecHHHHHhhcCCe---------EEEEeCCEEE
Confidence 9999988888 677777765 5899999999988765 4 566 4445555553
No 135
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.69 E-value=1.7e-16 Score=168.47 Aligned_cols=151 Identities=14% Similarity=0.060 Sum_probs=106.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-----hhh----------------------hcccccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-----LMA----------------------QVGSFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-----~la----------------------q~g~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++. ... +.-.|+|+...
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 4667899999999999999999999999999998765 210 00124443321
Q ss_pred cchH----------------------HHHHHHhcCCchhhhhc--ccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002306 695 SISV----------------------RDCIFARVGAGDCQLRG--VSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (938)
Q Consensus 695 ~~~~----------------------~d~i~~~~~~~d~~~~~--~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd 749 (938)
..++ +..++..+|..+..... ...+|+++++...+++ .+.+|+++|||||++|+|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 173 (227)
T cd03260 94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173 (227)
T ss_pred cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 0111 12344556665544444 3778877777666555 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+.....+ +.++..+.+ . .++|++||+.+.. .++++ ...+.++++.
T Consensus 174 ~~~~~~l-~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~---------i~~l~~G~i~ 219 (227)
T cd03260 174 PISTAKI-EELIAELKK-E-YTIVIVTHNMQQAARVADR---------TAFLLNGRLV 219 (227)
T ss_pred HHHHHHH-HHHHHHHhh-C-cEEEEEeccHHHHHHhCCE---------EEEEeCCEEE
Confidence 9888887 777777776 4 8999999998764 57776 5455555543
No 136
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.2e-16 Score=174.77 Aligned_cols=142 Identities=20% Similarity=0.181 Sum_probs=104.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---------------------hhhccccccccc----ccchH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDR----ASISV 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------laq~g~~vp~~~----~~~~~ 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.. ..++ .|+|+.. ...++
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV-GLVFQNPDDQIFSPTV 96 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe-EEEecCcccccccccH
Confidence 46679999999999999999999999999999976421 0112 3444432 01111
Q ss_pred ---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 699 ---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
++.++.++|+.+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l 176 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 234455567666666667778877766555544 5789999999999999999888887
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.++..+.++.|+++|++||+++.. +++++
T Consensus 177 -~~~l~~l~~~~g~tvli~tH~~~~~~~~~dr 207 (277)
T PRK13652 177 -IDFLNDLPETYGMTVIFSTHQLDLVPEMADY 207 (277)
T ss_pred -HHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 7777777653489999999998765 67877
No 137
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.2e-16 Score=175.46 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=104.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhcccccccccc----c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA----S 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~----~ 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. .+.-.|+|.... .
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 477899999999999999999999999999999764210 011134444320 0
Q ss_pred chH---------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 696 ISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 696 ~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
..+ +..++..+|.. +........+|+++++...+++ .+.+|+++|||||++|+|+..
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 011 22445566765 4455667788877776655555 478999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
...+ ..++..+.++.|.++|++||+.+.. .++++
T Consensus 181 ~~~l-~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 181 KRQV-MRLLKSLQTDENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred HHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 8888 7778877654589999999998765 57776
No 138
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.69 E-value=1.1e-16 Score=179.87 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=112.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hccccccccccc---c------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRAS---I------ 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~~---~------ 696 (938)
.+.++++|++.+|++++|+||||||||||||+|+++.-.. ..-.|+|++.+- +
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni 95 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI 95 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence 4667899999999999999999999999999998653110 011233332210 0
Q ss_pred -------------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 697 -------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 697 -------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
..+..++..+++.+........+|++++|...+.+ .+.+|+++|||||++|+|+.....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l 175 (353)
T PRK10851 96 AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175 (353)
T ss_pred HhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 12234566677777677777788877777665555 4789999999999999999988888
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHH-HHHhhhcccccccccccceeEEEEEE
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
...+..+.++.|.++|++||+++. ..++++ ...+.++++..
T Consensus 176 -~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dr---------i~vl~~G~i~~ 217 (353)
T PRK10851 176 -RRWLRQLHEELKFTSVFVTHDQEEAMEVADR---------VVVMSQGNIEQ 217 (353)
T ss_pred -HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 666777766458999999999865 467887 55566666543
No 139
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=7.8e-17 Score=168.18 Aligned_cols=139 Identities=16% Similarity=0.102 Sum_probs=101.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cc----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SI---- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~---- 696 (938)
.+.++++|++.+|++++|+||||||||||+|++++.... .++ .|+|.... ..
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL-LYLGHQPGIKTELTALE 93 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe-EEeCCccccCcCCcHHH
Confidence 456799999999999999999999999999999764210 111 12322210 00
Q ss_pred --------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002306 697 --------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (938)
Q Consensus 697 --------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il 761 (938)
..++.++.++|..+......+.+|+++++...+++ .+.+|+++|+|||++|+|+.....+ +.++
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l 172 (204)
T PRK13538 94 NLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL-EALL 172 (204)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHH
Confidence 12234566677766666677788877766655554 4889999999999999999988888 6777
Q ss_pred HHHHhcCCCeEEEEeCChHHHHHh
Q 002306 762 EHLVEEIRAPTLFATHFHELTALA 785 (938)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~el~~~~ 785 (938)
+.+.+ .+.++|++||+.+....+
T Consensus 173 ~~~~~-~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 173 AQHAE-QGGMVILTTHQDLPVASD 195 (204)
T ss_pred HHHHH-CCCEEEEEecChhhhccC
Confidence 77765 588999999998776544
No 140
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.2e-16 Score=163.41 Aligned_cols=154 Identities=18% Similarity=0.101 Sum_probs=113.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-----cc----------------ccccccc-----ccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----VG----------------SFVPCDR-----ASI- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-----~g----------------~~vp~~~-----~~~- 696 (938)
.+.|+++|++.+|+.++|+||+||||||+.|+++++.-..+ -| .+|+++. ...
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 47789999999999999999999999999999987642211 01 1121111 000
Q ss_pred ---------hH---------HHHHHHhcCCchhh-hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 697 ---------SV---------RDCIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 697 ---------~~---------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
.+ ...++..+|+.... .+....||++.+|...|++ .+.+|+++|+|||+++||+.....|
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 01 34567777876544 4445668876665555554 5789999999999999999888888
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHHH-HhhhcccccccccccceeEEEEEE
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
+.++..+.++.+.+.||+|||..+.. +|++ +.-+.++++.-
T Consensus 181 -lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdR---------i~Vm~~G~ivE 222 (252)
T COG1124 181 -LNLLLELKKERGLTYLFISHDLALVEHMCDR---------IAVMDNGQIVE 222 (252)
T ss_pred -HHHHHHHHHhcCceEEEEeCcHHHHHHHhhh---------eeeeeCCeEEE
Confidence 99999998888999999999998875 8888 66666666543
No 141
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.69 E-value=1.3e-16 Score=172.11 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=101.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------------------hhcccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------------------AQVGSFVP 690 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------------------aq~g~~vp 690 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 456799999999999999999999999999999764211 11112333
Q ss_pred cccc---cchH----------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCC
Q 002306 691 CDRA---SISV----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDEL 744 (938)
Q Consensus 691 ~~~~---~~~~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp 744 (938)
.... ..++ +..++.++|..+........+|+++++...+.+ .+.+|+++|||||
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3221 0111 123455566665555666777776666555444 5789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++|+|+.....+ ..+++.+.++.|.++|++||+++.. .++++
T Consensus 174 ~~~LD~~~~~~l-~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 216 (252)
T TIGR03005 174 TSALDPELVGEV-LNVIRRLASEHDLTMLLVTHEMGFAREFADR 216 (252)
T ss_pred cccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 999999888877 6666666653589999999998765 57776
No 142
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=1.8e-16 Score=151.74 Aligned_cols=155 Identities=21% Similarity=0.205 Sum_probs=106.9
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH---------------------------hhhhccccccc---
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------------LMAQVGSFVPC--- 691 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------------~laq~g~~vp~--- 691 (938)
...+.|+++|.+.+|++.+||||+|||||||+|++|.+. +.+|-....|.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 457889999999999999999999999999999998653 22221111110
Q ss_pred -----------ccccchHHHHHHHhcCCchhhhh-cccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 692 -----------DRASISVRDCIFARVGAGDCQLR-GVSTFMQ-EMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 692 -----------~~~~~~~~d~i~~~~~~~d~~~~-~~s~f~~-e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
+...-..+-.++.|++..+.+.. ....+|+ |.++++.+.....-|.++||||||+.+|+.....| .
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i-e 173 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI-E 173 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH-H
Confidence 00111123356788887665543 3444555 45555555556789999999999999999999999 5
Q ss_pred HHHHHHHhcCCCeEEEEeCChHH-HHHhhhcccccccccccceeEEEEE
Q 002306 759 AICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el-~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+++-++..+.+..++.+||+.+. .+.++. +..+..+|..
T Consensus 174 ~mi~~~v~~q~vAv~WiTHd~dqa~rha~k---------~itl~~G~~~ 213 (223)
T COG4619 174 EMIHRYVREQNVAVLWITHDKDQAIRHADK---------VITLQPGHAG 213 (223)
T ss_pred HHHHHHhhhhceEEEEEecChHHHhhhhhe---------EEEeccCccc
Confidence 55544443368999999999766 567776 5555555543
No 143
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.69 E-value=1.2e-16 Score=169.29 Aligned_cols=143 Identities=17% Similarity=0.098 Sum_probs=100.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------------hcc-cccccccc-----------cc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------QVG-SFVPCDRA-----------SI 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------q~g-~~vp~~~~-----------~~ 696 (938)
..+.++++|++.+|++++|+||||||||||+++++++.... +.+ .+.|.... ..
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~ 114 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGL 114 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCC
Confidence 35667999999999999999999999999999998753210 111 11121000 00
Q ss_pred ------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002306 697 ------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (938)
Q Consensus 697 ------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (938)
..+..++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.+++.+.+ .|
T Consensus 115 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~-~~~l~~~~~-~~ 192 (224)
T cd03220 115 SRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC-QRRLRELLK-QG 192 (224)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh-CC
Confidence 01223445566666666666778877666655444 5789999999999999999988888 666677766 48
Q ss_pred CeEEEEeCChHHH-HHhhh
Q 002306 770 APTLFATHFHELT-ALAHE 787 (938)
Q Consensus 770 ~~~l~~TH~~el~-~~~~~ 787 (938)
.++|++||+.+.. .++++
T Consensus 193 ~tiii~sH~~~~~~~~~d~ 211 (224)
T cd03220 193 KTVILVSHDPSSIKRLCDR 211 (224)
T ss_pred CEEEEEeCCHHHHHHhCCE
Confidence 8999999998765 56766
No 144
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.7e-16 Score=166.99 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=99.6
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhcccccccccc---cchH--
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SISV-- 698 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~---~~~~-- 698 (938)
+++|++.+ ++++|+||||||||||+++++++... .+.-.|+|.... ..++
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 88899899 99999999999999999999765311 001123443321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
+..++.++|..+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~ 173 (214)
T cd03297 95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL-LPE 173 (214)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 223556677766666667788877766655554 4889999999999999999888887 677
Q ss_pred HHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+..+.++.|+++|++||+.+.. .++++
T Consensus 174 l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (214)
T cd03297 174 LKQIKKNLNIPVIFVTHDLSEAEYLADR 201 (214)
T ss_pred HHHHHHHcCcEEEEEecCHHHHHHhcCE
Confidence 7777653489999999998765 57776
No 145
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.69 E-value=1.1e-16 Score=168.17 Aligned_cols=140 Identities=18% Similarity=0.146 Sum_probs=100.5
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------hhcccccccccc---cchH-------
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------AQVGSFVPCDRA---SISV------- 698 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------aq~g~~vp~~~~---~~~~------- 698 (938)
.+++|++.+|++++|+||||||||||+|+++++... .....|+|+... ..++
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG 94 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence 478888899999999999999999999999765311 011224443321 0111
Q ss_pred --------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002306 699 --------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (938)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (938)
+..++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l~~ 173 (213)
T TIGR01277 95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM-LALVKQ 173 (213)
T ss_pred hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHHHH
Confidence 223556666666566666778777766655554 5889999999999999999988888 666777
Q ss_pred HHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 764 LVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 764 l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.++.++++|++||+.+.. .++++
T Consensus 174 ~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 174 LCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred HHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 6653589999999998764 56776
No 146
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.5e-16 Score=174.52 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=105.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcccccccccc----cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA----SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~~----~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. .....|+|.... ...
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 99 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcccc
Confidence 466799999999999999999999999999999765210 011235554421 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+ ++.++.++|+.+........+|+++++...+.+. +.+|+++|||||++|+|+.....
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~ 179 (283)
T PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179 (283)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 1 2334556666666666777888777776655554 78999999999999999988888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ ..+++.+.++.|.++|++||+.+.. .++++
T Consensus 180 l-~~~l~~l~~~~g~tillvsH~~~~~~~~~dr 211 (283)
T PRK13636 180 I-MKLLVEMQKELGLTIIIATHDIDIVPLYCDN 211 (283)
T ss_pred H-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 7 6777777653489999999998876 47877
No 147
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.69 E-value=1.8e-16 Score=170.04 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=100.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc---cch--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SIS-- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~---~~~-- 697 (938)
.+.++++|++.+|++++|+||||||||||||++++.... .+.-.|+|.... ..+
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF 95 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence 467799999999999999999999999999999764210 011113332210 011
Q ss_pred ---------------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002306 698 ---------------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (938)
Q Consensus 698 ---------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd 749 (938)
.+..++.++|..+......+.+|+++++...+.+ .+.+|+++|||||++|+|
T Consensus 96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD 175 (242)
T TIGR03411 96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT 175 (242)
T ss_pred HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 1234455666666566666777776666555444 578999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.....+ +.++..+.+ +.++|++||+++.. ++|++
T Consensus 176 ~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d~ 211 (242)
T TIGR03411 176 DEETEKT-AELLKSLAG--KHSVVVVEHDMEFVRSIADK 211 (242)
T ss_pred HHHHHHH-HHHHHHHhc--CCEEEEEECCHHHHHHhCCE
Confidence 9888887 677777764 68999999998765 57776
No 148
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.68 E-value=1.3e-16 Score=168.70 Aligned_cols=141 Identities=16% Similarity=0.083 Sum_probs=99.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chHH--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVR-- 699 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~-- 699 (938)
.+.++++|++.+|++++|+|||||||||||++++++... .....|+|+.... ..+.
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 97 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN 97 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence 577899999999999999999999999999999765310 0112344443211 1111
Q ss_pred -------------HHHHHhcCCchhhhh-----------cccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 700 -------------DCIFARVGAGDCQLR-----------GVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 700 -------------d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
..++..++..+.+.. ....+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 98 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 177 (220)
T cd03245 98 ITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177 (220)
T ss_pred hhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 223344455443332 12477777766655554 47899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ +.+++.+.+ +.++|++||++++.+++++
T Consensus 178 ~l-~~~l~~~~~--~~tii~~sH~~~~~~~~d~ 207 (220)
T cd03245 178 RL-KERLRQLLG--DKTLIIITHRPSLLDLVDR 207 (220)
T ss_pred HH-HHHHHHhcC--CCEEEEEeCCHHHHHhCCE
Confidence 88 666777765 3899999999987777766
No 149
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.2e-16 Score=175.84 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=109.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------------hcccccccccc----c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA----S 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------------q~g~~vp~~~~----~ 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.... +...|+|+... .
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 4677999999999999999999999999999997643110 11234554320 0
Q ss_pred ch---------------------HHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 696 IS---------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 696 ~~---------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
.. .++.++..+|+. +........+|+++++...+.+ .+.+|+++|||||++|+|+..
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 11 123345567775 3445667788877766655554 478999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
...+ ..++..+.++.|.++|++||+.+.. .++++ ...+.++++.
T Consensus 181 ~~~l-~~~L~~l~~~~g~tviiitHd~~~~~~~~dr---------v~~l~~G~i~ 225 (290)
T PRK13634 181 RKEM-MEMFYKLHKEKGLTTVLVTHSMEDAARYADQ---------IVVMHKGTVF 225 (290)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 8887 7777777664589999999998765 57777 5545555544
No 150
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.68 E-value=1.7e-16 Score=171.65 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=102.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cchH-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISV- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~~- 698 (938)
..+.++++|++.+|++++|+||||||||||||+++++.-. .+.-.|+|.... ...+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHH
Confidence 3467799999999999999999999999999999765211 011124443321 1111
Q ss_pred --------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-C------CCCcEEEEeCCCCCCChh
Q 002306 699 --------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-A------TDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 699 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a------~~~slvllDEp~~gtd~~ 751 (938)
+..++..+|..+........+|+++++...+.+. + .+|+++|||||++|+|+.
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~ 174 (258)
T PRK13548 95 EVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174 (258)
T ss_pred HHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHH
Confidence 2234555666655566667788777776666655 4 389999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
....+ ..++..+.++.|.++|++||+++.. .++++
T Consensus 175 ~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 210 (258)
T PRK13548 175 HQHHV-LRLARQLAHERGLAVIVVLHDLNLAARYADR 210 (258)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhcCE
Confidence 88888 6666666622588999999998765 47776
No 151
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.68 E-value=1.5e-16 Score=168.11 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=103.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||++++++.... .+.-.|+|.... ..+
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 456789999999999999999999999999999764210 011123333211 001
Q ss_pred ----------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 698 ----------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 698 ----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.+..++.++|..+........+++++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~ 178 (220)
T TIGR02982 99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178 (220)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 1334556677766666666778777666555544 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..+++.+.++.+.++|++||++++..++++
T Consensus 179 ~l-~~~l~~~~~~~~~tii~~sh~~~~~~~~d~ 210 (220)
T TIGR02982 179 DV-VELMQKLAREQGCTILIVTHDNRILDVADR 210 (220)
T ss_pred HH-HHHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence 87 777777765358999999999987777766
No 152
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.2e-16 Score=173.92 Aligned_cols=143 Identities=17% Similarity=0.036 Sum_probs=102.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc----cch--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA----SIS-- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~----~~~-- 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|.... ...
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 467799999999999999999999999999999765311 011124443321 000
Q ss_pred -------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 698 -------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 698 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
.+..++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l- 181 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL- 181 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-
Confidence 1223455566666566666778877666555544 5889999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.++..+.++.|+++|++||+.+....+++
T Consensus 182 ~~~L~~~~~~~~~tiiivtH~~~~~~~~d~ 211 (269)
T PRK13648 182 LDLVRKVKSEHNITIISITHDLSEAMEADH 211 (269)
T ss_pred HHHHHHHHHhcCCEEEEEecCchHHhcCCE
Confidence 666666665348999999999877655665
No 153
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.1e-16 Score=169.58 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=101.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------------hhcccccccccc---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------------AQVGSFVPCDRA--- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------------aq~g~~vp~~~~--- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|....
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 466799999999999999999999999999999765210 011134443321
Q ss_pred cchHH----------------------HHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002306 695 SISVR----------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 695 ~~~~~----------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~ 751 (938)
..++. ..++..+|..+.+......+|+++++...+++ .+.+|+++|||||++|+|+.
T Consensus 96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~ 175 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence 11111 22345556655555556677776666555444 47899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
....+ ..+++.+.+ .|.++|++||+.+.. +++++
T Consensus 176 ~~~~l-~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 176 ITAQI-VSIIRELAE-TGITQVIVTHEVEVARKTASR 210 (242)
T ss_pred HHHHH-HHHHHHHHH-cCCEEEEEeCCHHHHHHhcCE
Confidence 87777 677777765 589999999998765 57776
No 154
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.5e-16 Score=174.83 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=102.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhccccccccc----cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDR----AS 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~----~~ 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.||++.. ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 467799999999999999999999999999999765211 01112444331 00
Q ss_pred chH---------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 696 ISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 696 ~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
.++ +..++..+|.. +........+|+++++...+.+ .+.+|+++|||||++|+|+..
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 111 22345556664 3345556677776666555554 478999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
...+ ..+++.+.+ .|.++|++||+++.+ .+|++
T Consensus 180 ~~~l-~~~l~~l~~-~g~til~vtHd~~~~~~~~dr 213 (288)
T PRK13643 180 RIEM-MQLFESIHQ-SGQTVVLVTHLMDDVADYADY 213 (288)
T ss_pred HHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE
Confidence 8887 777788876 589999999998865 67887
No 155
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.68 E-value=2e-16 Score=172.01 Aligned_cols=144 Identities=17% Similarity=0.086 Sum_probs=102.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-----------------------hhhcccccccccc-----
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-----------------------MAQVGSFVPCDRA----- 694 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-----------------------laq~g~~vp~~~~----- 694 (938)
..+.++++|++.+|++++|+||||||||||||+++++.. ..+.-.|+|....
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 357789999999999999999999999999999976521 0111234444320
Q ss_pred cchH----------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCCh
Q 002306 695 SISV----------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTST 750 (938)
Q Consensus 695 ~~~~----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~ 750 (938)
...+ +..++..+|.. .........+|+++++...+. ..+.+|+++|||||++|+|+
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 0111 12345556664 334555667777766655555 45789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
.....+ ..+++.+.++.|.++|++||+.+... ++++
T Consensus 184 ~~~~~l-~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 184 VLQAVI-LELLRKLQQAFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred HHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHHhcE
Confidence 887777 66666666534899999999988764 6776
No 156
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.4e-16 Score=171.35 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=102.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cch---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SIS--- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~--- 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. .+...|+|.... ...
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence 467799999999999999999999999999999765210 011123333210 001
Q ss_pred ----------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002306 698 ----------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 698 ----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.++.++.+++..+.+......+|+++++...++ ..+.+|+++|||||++|+|+....
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 184 (265)
T PRK10575 105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 123455666666555666677887666655544 458899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ ..++..+.+..|+++|++||+.+.. .++++
T Consensus 185 ~~-~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~ 217 (265)
T PRK10575 185 DV-LALVHRLSQERGLTVIAVLHDINMAARYCDY 217 (265)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 87 6777777653489999999998765 57776
No 157
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=5e-17 Score=167.93 Aligned_cols=135 Identities=12% Similarity=0.113 Sum_probs=92.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-hhcc-----------------cccccccccchHHHHHHHh
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVG-----------------SFVPCDRASISVRDCIFAR 705 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-aq~g-----------------~~vp~~~~~~~~~d~i~~~ 705 (938)
.+.++++|++.+|++++|+||||||||||||++++.... +.-| .|+|.... ++..
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~-------~~~~ 93 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDV-------HSPN 93 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCc-------cccC
Confidence 466799999999999999999999999999999875321 1222 12232211 1111
Q ss_pred cCCchhhhhcc--cchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChH--
Q 002306 706 VGAGDCQLRGV--STFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE-- 780 (938)
Q Consensus 706 ~~~~d~~~~~~--s~f~~e~~~~~~-il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~e-- 780 (938)
+...+++..+. ..+|+++++... +.+.+.+|+++|+|||++|+|+.....+ +.+++.+.+ .|+++|++||+++
T Consensus 94 ~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiiivtH~~~~~ 171 (192)
T cd03232 94 LTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNI-VRFLKKLAD-SGQAILCTIHQPSAS 171 (192)
T ss_pred CcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH-HHHHHHHHH-cCCEEEEEEcCChHH
Confidence 12222222111 156666555544 4455889999999999999999888887 777777776 5899999999986
Q ss_pred HHHHhhh
Q 002306 781 LTALAHE 787 (938)
Q Consensus 781 l~~~~~~ 787 (938)
+...+++
T Consensus 172 ~~~~~d~ 178 (192)
T cd03232 172 IFEKFDR 178 (192)
T ss_pred HHhhCCE
Confidence 3567766
No 158
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.68 E-value=2e-16 Score=169.13 Aligned_cols=153 Identities=18% Similarity=0.136 Sum_probs=108.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------hhccccccccccc---ch-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------AQVGSFVPCDRAS---IS----- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------aq~g~~vp~~~~~---~~----- 697 (938)
.+.++++|++.+|++++|+||||||||||+++++++... .+.-.|+|..... .+
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 467799999999999999999999999999999865211 0111244433210 01
Q ss_pred ----------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 698 ----------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 698 ----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
.++.++.+++..+........+|+++++...+. ..+.+|+++|||||++|+|+.....+ +.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~~~ 172 (237)
T TIGR00968 94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL-RSW 172 (237)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 123455666766556666677887766655444 45789999999999999999888877 667
Q ss_pred HHHHHhcCCCeEEEEeCChHH-HHHhhhcccccccccccceeEEEEE
Q 002306 761 CEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el-~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
++.+.++.++++|++||+++. ..++++ ...+.++++.
T Consensus 173 l~~~~~~~~~tvli~sH~~~~~~~~~d~---------i~~l~~g~i~ 210 (237)
T TIGR00968 173 LRKLHDEVHVTTVFVTHDQEEAMEVADR---------IVVMSNGKIE 210 (237)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhhcCE---------EEEEECCEEE
Confidence 777765348999999999875 467777 5555665553
No 159
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.68 E-value=1.2e-16 Score=166.16 Aligned_cols=135 Identities=20% Similarity=0.116 Sum_probs=94.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-hhhhccc----------------------ccccccccchHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LMAQVGS----------------------FVPCDRASISVRD 700 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~laq~g~----------------------~vp~~~~~~~~~d 700 (938)
.+.++++|++.+|++++|+||||||||||+|++++.. ....-|. |+|...
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~------- 86 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYP------- 86 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecCh-------
Confidence 4566999999999999999999999999999998863 1122221 112111
Q ss_pred HHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 701 CIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 701 ~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
.++..+...+.+......+|+++++...+. ..+.+|+++|||||++|+|+.....+ +.++..+.+ .++++|++||++
T Consensus 87 ~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~L~~~~~-~~~tiii~sh~~ 164 (200)
T cd03217 87 PEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV-AEVINKLRE-EGKSVLIITHYQ 164 (200)
T ss_pred hhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHH-CCCEEEEEecCH
Confidence 111111122222222246776666554444 45789999999999999999888887 777777765 589999999999
Q ss_pred HHHH--Hhhh
Q 002306 780 ELTA--LAHE 787 (938)
Q Consensus 780 el~~--~~~~ 787 (938)
+... ++++
T Consensus 165 ~~~~~~~~d~ 174 (200)
T cd03217 165 RLLDYIKPDR 174 (200)
T ss_pred HHHHHhhCCE
Confidence 8776 6776
No 160
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.68 E-value=2e-16 Score=163.66 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=93.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH--hhhhcc------------------cccccccccchHHHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--LMAQVG------------------SFVPCDRASISVRDCI 702 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--~laq~g------------------~~vp~~~~~~~~~d~i 702 (938)
..+.++++|++.+|++++|+||||||||||+++++++. ... -| .|+|.... +
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~-------~ 93 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKIIGYVPQDDI-------L 93 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheEEEccCccc-------C
Confidence 35777999999999999999999999999999998865 221 11 12232211 1
Q ss_pred HHhcCCchhhhhc--ccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 703 FARVGAGDCQLRG--VSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 703 ~~~~~~~d~~~~~--~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
+..+...+++..+ ...+|+++++. +.+.+.+.+|+++|||||++|+|+.....+ ..+++.+.+ .|.++|++||++
T Consensus 94 ~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiii~sh~~ 171 (194)
T cd03213 94 HPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV-MSLLRRLAD-TGRTIICSIHQP 171 (194)
T ss_pred CCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCc
Confidence 1111122222211 11566555554 444445789999999999999999888877 677777776 489999999997
Q ss_pred H--HHHHhhh
Q 002306 780 E--LTALAHE 787 (938)
Q Consensus 780 e--l~~~~~~ 787 (938)
+ +..++++
T Consensus 172 ~~~~~~~~d~ 181 (194)
T cd03213 172 SSEIFELFDK 181 (194)
T ss_pred hHHHHHhcCE
Confidence 4 4567776
No 161
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.67 E-value=1.6e-16 Score=179.25 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=112.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------h--------------------hcccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------A--------------------QVGSFVPCDRA 694 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------a--------------------q~g~~vp~~~~ 694 (938)
..+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|+...
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 3456789999999999999999999999999999754210 0 11123433321
Q ss_pred c---chH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002306 695 S---ISV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTS 749 (938)
Q Consensus 695 ~---~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd 749 (938)
- .++ +..++..+|+.+........+|++|++...+.+. +.+|+++|||||++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 1 111 2234566777666666777888888776665554 88999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
+.....+ ...+..+.++.+.++||+||+++.+ +++++ ...+.++++..
T Consensus 197 ~~~r~~l-~~~L~~l~~~~~~TII~iTHdl~e~~~l~Dr---------I~vl~~G~iv~ 245 (382)
T TIGR03415 197 PLIRTQL-QDELLELQAKLNKTIIFVSHDLDEALKIGNR---------IAIMEGGRIIQ 245 (382)
T ss_pred HHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 9999988 6666666654589999999998765 78887 66667766643
No 162
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.67 E-value=2.2e-16 Score=170.59 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=100.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------h----------------hcccccccccc-c----c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------A----------------QVGSFVPCDRA-S----I 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------a----------------q~g~~vp~~~~-~----~ 696 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. + +...|+|.+.. . .
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 456699999999999999999999999999999876422 0 11124444321 0 0
Q ss_pred h-------------------HHHHHHHhcCCch---hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 697 S-------------------VRDCIFARVGAGD---CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 697 ~-------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
. .+..++.+++..+ .+......+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~ 176 (254)
T PRK10418 97 TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176 (254)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 1 1123445555543 234556677766666555444 5889999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
..+ +.+++.+.++.|.++|++||+.+.. .++++
T Consensus 177 ~~l-~~~L~~~~~~~g~til~~sH~~~~~~~~~d~ 210 (254)
T PRK10418 177 ARI-LDLLESIVQKRALGMLLVTHDMGVVARLADD 210 (254)
T ss_pred HHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhCCE
Confidence 877 7777777653589999999998765 57776
No 163
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.67 E-value=2.1e-16 Score=171.14 Aligned_cols=153 Identities=20% Similarity=0.137 Sum_probs=108.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-----------------hh------------hcccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-----------------MA------------QVGSFVPCDRA 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-----------------la------------q~g~~vp~~~~ 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.- +. +...|+|....
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 46679999999999999999999999999999976421 10 01235554421
Q ss_pred -----cch----------------------HHHHHHHhcCCch-hhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCC
Q 002306 695 -----SIS----------------------VRDCIFARVGAGD-CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELG 745 (938)
Q Consensus 695 -----~~~----------------------~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~ 745 (938)
.+. .++.++..++..+ ......+.+|+++++...+. +.+.+|+++|||||+
T Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt 179 (258)
T PRK11701 100 DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT 179 (258)
T ss_pred cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 011 1123455666653 45666777887766655554 458899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-HhhhcccccccccccceeEEEEE
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+|+|+.....+ +.+++.+.++.|.++|++||+.+... ++++ ...+.++++.
T Consensus 180 ~~LD~~~~~~l-~~~l~~~~~~~~~tii~isH~~~~~~~~~d~---------i~~l~~g~i~ 231 (258)
T PRK11701 180 GGLDVSVQARL-LDLLRGLVRELGLAVVIVTHDLAVARLLAHR---------LLVMKQGRVV 231 (258)
T ss_pred ccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE---------EEEEECCEEE
Confidence 99999888877 66667766535899999999988774 7776 5555555553
No 164
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.67 E-value=2.1e-16 Score=171.06 Aligned_cols=142 Identities=17% Similarity=0.088 Sum_probs=101.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------------------------------hcccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------------------QVGSFVP 690 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------------------------------q~g~~vp 690 (938)
.+.++++|++.+|++++|+||||||||||+|++++..... +.-.|+|
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 4677999999999999999999999999999997653110 0113333
Q ss_pred ccccc---chHH----------------------HHHHHhcCCchhh-hhcccchHHHHHHHHHHHH-hCCCCcEEEEeC
Q 002306 691 CDRAS---ISVR----------------------DCIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDE 743 (938)
Q Consensus 691 ~~~~~---~~~~----------------------d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~a~~~slvllDE 743 (938)
....- ..+. ..++.++|..+.. ....+.+|+++++...+.+ .+.+|+++||||
T Consensus 99 q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 178 (257)
T PRK10619 99 QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDE 178 (257)
T ss_pred cCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33210 1111 2345556665543 4556778877766655554 478999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 744 p~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
|++|+|+.....+ ..++..+.+ .|+++|++||+.+... ++++
T Consensus 179 Pt~~LD~~~~~~l-~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~ 221 (257)
T PRK10619 179 PTSALDPELVGEV-LRIMQQLAE-EGKTMVVVTHEMGFARHVSSH 221 (257)
T ss_pred CcccCCHHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhcCE
Confidence 9999999888887 677777776 5899999999987654 6776
No 165
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.5e-16 Score=180.63 Aligned_cols=152 Identities=15% Similarity=0.105 Sum_probs=111.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------------hhccccccccccc---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------------AQVGSFVPCDRAS--- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------------aq~g~~vp~~~~~--- 695 (938)
...++++|++.+|++++|+||||||||||||+++++... .++ .|+|+...-
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i-gyv~Q~~~l~~~ 120 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI-AMVFQSFALMPH 120 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCE-EEEECCCcCCCC
Confidence 346789999999999999999999999999999754210 012 244443211
Q ss_pred ch---------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 696 IS---------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 696 ~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
.+ .++.++..+|+.+......+.+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 11 1224566677776677777888887777666555 4889999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
..+ +.++..+.++.|+++|++||+.+.+ .++++ ...+.++++.
T Consensus 201 ~~l-~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dr---------i~vL~~G~i~ 244 (400)
T PRK10070 201 TEM-QDELVKLQAKHQRTIVFISHDLDEAMRIGDR---------IAIMQNGEVV 244 (400)
T ss_pred HHH-HHHHHHHHHHCCCeEEEEECCHHHHHHhCCE---------EEEEECCEEE
Confidence 888 6677777654589999999998765 57777 5556666654
No 166
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.67 E-value=3.3e-16 Score=168.53 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=99.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-----h----------------------ccccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----Q----------------------VGSFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-----q----------------------~g~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... . .-.|+|....-
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 3566999999999999999999999999999998654211 0 11233332110
Q ss_pred -chHH----------------------HHHHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 696 -ISVR----------------------DCIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~----------------------d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
..+. ..++..+|.. +.+......+|+++++...+.+ .+.+|+++|||||++|
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 1111 1234445554 4455556677877766655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..+.+ ++++|++||+.+.. .++++
T Consensus 175 LD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 175 LDPIATGKI-EELIQELKK--KYTIVIVTHNMQQAARISDR 212 (247)
T ss_pred CCHHHHHHH-HHHHHHHHh--cCeEEEEecCHHHHHHhCCE
Confidence 999888887 777777765 48999999998754 67776
No 167
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.67 E-value=1.4e-16 Score=162.58 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=90.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccc--------------------ccccccccchHHHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS--------------------FVPCDRASISVRDCIF 703 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~--------------------~vp~~~~~~~~~d~i~ 703 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ..|. |+|.... ++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~-------~~ 87 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPY-------LF 87 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCe-------ee
Confidence 356689999999999999999999999999999875321 1221 1221110 11
Q ss_pred HhcCCchhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH
Q 002306 704 ARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (938)
Q Consensus 704 ~~~~~~d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~ 782 (938)
. ....+++ ...+++++++. +.+.+.+.+|+++|||||++|+|+.....+ +.++..+. .+.++|++||+.+..
T Consensus 88 ~-~tv~~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~--~~~tii~~sh~~~~~ 160 (178)
T cd03247 88 D-TTLRNNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL-LSLIFEVL--KDKTLIWITHHLTGI 160 (178)
T ss_pred c-ccHHHhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH-HHHHHHHc--CCCEEEEEecCHHHH
Confidence 0 1122232 34555555554 444455899999999999999999887777 66667664 378999999998877
Q ss_pred HHhhh
Q 002306 783 ALAHE 787 (938)
Q Consensus 783 ~~~~~ 787 (938)
..+++
T Consensus 161 ~~~d~ 165 (178)
T cd03247 161 EHMDK 165 (178)
T ss_pred HhCCE
Confidence 66655
No 168
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.67 E-value=2.5e-16 Score=169.40 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=103.3
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cch-----
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SIS----- 697 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~----- 697 (938)
+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ..+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 45789999999999999999999999999999865310 011124443311 001
Q ss_pred ---------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CC-------CCcEEEEeCCCCCCChhhHH
Q 002306 698 ---------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-AT-------DRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 698 ---------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~-------~~slvllDEp~~gtd~~~~~ 754 (938)
.++.++.++|..+........+|+++++...+++. +. +|+++|||||++|+|+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 12445666777766667778888888777666665 33 56999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChH-HHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~e-l~~~~~~ 787 (938)
.+ ..++..+.+ .|.++|++||+.+ +..++++
T Consensus 171 ~l-~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~ 202 (248)
T PRK03695 171 AL-DRLLSELCQ-QGIAVVMSSHDLNHTLRHADR 202 (248)
T ss_pred HH-HHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 88 677777765 5899999999987 4567776
No 169
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.67 E-value=2.3e-16 Score=164.21 Aligned_cols=142 Identities=17% Similarity=0.116 Sum_probs=100.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cch----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SIS---- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~---- 697 (938)
.+.++++|++.+|++++|+||||||||||+++++++... .+.-.|+|+... ..+
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 93 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLEN 93 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHH
Confidence 466799999999999999999999999999998765210 011123332211 011
Q ss_pred -----------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 002306 698 -----------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765 (938)
Q Consensus 698 -----------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~ 765 (938)
.++.++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..++..+.
T Consensus 94 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~ 172 (201)
T cd03231 94 LRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARF-AEAMAGHC 172 (201)
T ss_pred HHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHH
Confidence 1234556677766555666778876666555444 5789999999999999999988888 66666666
Q ss_pred hcCCCeEEEEeCChH-HHHHhhh
Q 002306 766 EEIRAPTLFATHFHE-LTALAHE 787 (938)
Q Consensus 766 ~~~~~~~l~~TH~~e-l~~~~~~ 787 (938)
+ .|+++|++||+.+ +...+++
T Consensus 173 ~-~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 173 A-RGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred h-CCCEEEEEecCchhhhhccce
Confidence 5 5899999999854 5455444
No 170
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.67 E-value=2e-16 Score=172.00 Aligned_cols=143 Identities=15% Similarity=0.019 Sum_probs=99.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc-----cch-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA-----SIS- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~-----~~~- 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-. .+...|+|.... ...
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 467799999999999999999999999999999765311 011224443321 000
Q ss_pred ---------------------HHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002306 698 ---------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 698 ---------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.+..++.++|+. +......+.+|+++++...+. ..+.+|.++|||||++|+|+....
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 186 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS 186 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHH
Confidence 122345566663 333444567776666655444 457899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
.+ ..++..+.++.|.++|++||+.+... ++++
T Consensus 187 ~l-~~~l~~~~~~~g~tviivsH~~~~~~~~~d~ 219 (267)
T PRK15112 187 QL-INLMLELQEKQGISYIYVTQHLGMMKHISDQ 219 (267)
T ss_pred HH-HHHHHHHHHHcCcEEEEEeCCHHHHHHhcCE
Confidence 77 66667776534889999999987664 6766
No 171
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.67 E-value=2.5e-16 Score=170.31 Aligned_cols=142 Identities=20% Similarity=0.218 Sum_probs=102.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cchH--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISV-- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~~-- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-. .+.-.|+|++.. ..++
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD 94 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence 466799999999999999999999999999999764210 111124444321 0111
Q ss_pred -----------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 699 -----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 699 -----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+..++.++|..+........+|+++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 174 (256)
T TIGR03873 95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL 174 (256)
T ss_pred HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 223445566655556666777777766655554 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ ..+++.+.+ .|.++|++||+++.. +++++
T Consensus 175 ~l-~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~ 206 (256)
T TIGR03873 175 ET-LALVRELAA-TGVTVVAALHDLNLAASYCDH 206 (256)
T ss_pred HH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 87 677777775 588999999998776 67776
No 172
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=2e-16 Score=165.55 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=99.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------hhcccccccccc---cchH-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------AQVGSFVPCDRA---SISV----- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------aq~g~~vp~~~~---~~~~----- 698 (938)
.+.++++|++.+|++++|+||||||||||+++++++... ....+|+|.... ...+
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 95 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLE 95 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHH
Confidence 467799999999999999999999999999999765211 001123432211 1111
Q ss_pred ------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 002306 699 ------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765 (938)
Q Consensus 699 ------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~ 765 (938)
+..++..+|..+........+|+++++...+++ .+.+|+++|||||++|+|+.....+ +.++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~ 174 (207)
T PRK13539 96 FWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF-AELIRAHL 174 (207)
T ss_pred HHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHH
Confidence 234555666665555566678777666555444 4789999999999999999988888 77777776
Q ss_pred hcCCCeEEEEeCChHHHHH
Q 002306 766 EEIRAPTLFATHFHELTAL 784 (938)
Q Consensus 766 ~~~~~~~l~~TH~~el~~~ 784 (938)
+ .|.++|++||+.+....
T Consensus 175 ~-~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 175 A-QGGIVIAATHIPLGLPG 192 (207)
T ss_pred H-CCCEEEEEeCCchhhcc
Confidence 6 58999999999876543
No 173
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.7e-16 Score=172.39 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=101.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhccccccccc----cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDR----AS 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~----~~ 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+.. ..
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 366789999999999999999999999999999765210 01113555442 01
Q ss_pred chHH---------------------HHHHHhcCCch-hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 696 ISVR---------------------DCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 696 ~~~~---------------------d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
..+. +.++..+|..+ ......+.+|+++++...+++ .+.+|+++|||||++|+|+..
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 1111 22344556643 345556778877766655554 588999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
...+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 181 ~~~l-~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~ 214 (280)
T PRK13649 181 RKEL-MTLFKKLHQ-SGMTIVLVTHLMDDVANYADF 214 (280)
T ss_pred HHHH-HHHHHHHHH-CCCEEEEEeccHHHHHHhCCE
Confidence 8887 667777765 489999999998765 57776
No 174
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.2e-16 Score=178.80 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=109.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh------------------cccccccccc---cchH---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------------VGSFVPCDRA---SISV--- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq------------------~g~~vp~~~~---~~~~--- 698 (938)
..+.++++|++.+|++++|+||||||||||||+|+++....+ .-.|++++.+ .+++
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 111 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQN 111 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHH
Confidence 356779999999999999999999999999999987632110 0123433321 1111
Q ss_pred ------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 699 ------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 699 ------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
+..++..+|..+...+....+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..
T Consensus 112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l-~~ 190 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM-QL 190 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HH
Confidence 224455666666666666778877666555544 5889999999999999999988888 44
Q ss_pred HHHHHHhcCCCeEEEEeCChHH-HHHhhhcccccccccccceeEEEEEE
Q 002306 760 ICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el-~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.+..+.++.|.++|++||+.+. ..++++ ...+.++++..
T Consensus 191 ~l~~l~~~~g~tii~vTHd~~ea~~laDr---------i~vl~~G~i~~ 230 (377)
T PRK11607 191 EVVDILERVGVTCVMVTHDQEEAMTMAGR---------IAIMNRGKFVQ 230 (377)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCE---------EEEEeCCEEEE
Confidence 5555544468999999999876 468887 55555665543
No 175
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.9e-16 Score=168.75 Aligned_cols=142 Identities=17% Similarity=0.134 Sum_probs=100.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cchH--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SISV-- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~~-- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|++.. .+++
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 95 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE 95 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence 466789999999999999999999999999999764210 011224443321 1111
Q ss_pred -----------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002306 699 -----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 699 -----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+..++..+|..+........+|+++++...++ +.+.+|+++|||||++|+|+....
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 175 (255)
T PRK11231 96 LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV 175 (255)
T ss_pred HHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 12334445555555556667776666654444 458899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ ..++..+.+ .|.++|++||+.+.. +++++
T Consensus 176 ~l-~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 176 EL-MRLMRELNT-QGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred HH-HHHHHHHHH-CCCEEEEEECCHHHHHHhcCE
Confidence 77 666666765 489999999998764 57776
No 176
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.5e-16 Score=171.99 Aligned_cols=142 Identities=16% Similarity=0.121 Sum_probs=102.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcccccccccc----cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA----SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~~----~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|+... ...
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 355689999999999999999999999999999764211 111224444421 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+ +..++.++|+.+........+|+++++...+.+ .+.+|+++|||||++|+|+.....
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 1 223455566655555566778877766655554 488999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ ..++..+.+ .|.++|++||+.+.. .+|++
T Consensus 176 l-~~~l~~l~~-~~~til~vtH~~~~~~~~~d~ 206 (275)
T PRK13639 176 I-MKLLYDLNK-EGITIIISTHDVDLVPVYADK 206 (275)
T ss_pred H-HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE
Confidence 8 667777765 489999999998765 47776
No 177
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.67 E-value=2.3e-16 Score=161.60 Aligned_cols=135 Identities=14% Similarity=0.107 Sum_probs=91.6
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc----------------------cccccccccchHHHHH
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG----------------------SFVPCDRASISVRDCI 702 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g----------------------~~vp~~~~~~~~~d~i 702 (938)
+.++++|++.+|++++|+||||||||||+|++++..-. ..| .|+|.+... ..+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~----~~~ 89 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR----EGL 89 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccCHHHHHhCCeEEecCCccc----Ccc
Confidence 67899999999999999999999999999999875321 111 122221000 011
Q ss_pred HHhcCCchhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH
Q 002306 703 FARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781 (938)
Q Consensus 703 ~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el 781 (938)
+......+++.... .+|+++++. +.+...+.+|+++|||||++|+|+.....+ +.++..+.+ .+.++|++||+.+.
T Consensus 90 ~~~~t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiii~sh~~~~ 166 (182)
T cd03215 90 VLDLSVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI-YRLIRELAD-AGKAVLLISSELDE 166 (182)
T ss_pred cCCCcHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeCCHHH
Confidence 22222333332211 156555555 444455789999999999999999988888 667777765 48999999999754
Q ss_pred -HHHhhh
Q 002306 782 -TALAHE 787 (938)
Q Consensus 782 -~~~~~~ 787 (938)
..++++
T Consensus 167 ~~~~~d~ 173 (182)
T cd03215 167 LLGLCDR 173 (182)
T ss_pred HHHhCCE
Confidence 456765
No 178
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=6.4e-16 Score=159.20 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=107.9
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh----cccccccccc-----cc--------------hHHH--
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----VGSFVPCDRA-----SI--------------SVRD-- 700 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq----~g~~vp~~~~-----~~--------------~~~d-- 700 (938)
-.|++|++++|++++++|||||||||+||++.++..... ++.++|.+.. .+ +..|
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~ 119 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSL 119 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhH
Confidence 358999999999999999999999999999877654332 4455665421 11 1111
Q ss_pred -------------------HHHHhcCCchhhhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 701 -------------------CIFARVGAGDCQLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 701 -------------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~i-l~~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
.+-..++....+..+..++|.+.+..+.+ +....+|.+++|||||-|||.....+| ...
T Consensus 120 ~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i-r~F 198 (325)
T COG4586 120 EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI-REF 198 (325)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH-HHH
Confidence 11122344444555556666444444444 445789999999999999999999888 444
Q ss_pred HHHHHhcCCCeEEEEeCCh-HHHHHhhhcccccccccccceeEEEEEEE
Q 002306 761 CEHLVEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~-el~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
++...++.++||+++||++ +++++|++ ...+..+++.+.
T Consensus 199 lke~n~~~~aTVllTTH~~~di~~lc~r---------v~~I~~Gqlv~d 238 (325)
T COG4586 199 LKEYNEERQATVLLTTHIFDDIATLCDR---------VLLIDQGQLVFD 238 (325)
T ss_pred HHHHHHhhCceEEEEecchhhHHHhhhh---------eEEeeCCcEeec
Confidence 4444555799999999995 78899999 677777777664
No 179
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.3e-16 Score=169.61 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=98.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------------hhccccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------------AQVGSFVPCDRAS 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------------aq~g~~vp~~~~~ 695 (938)
..+.++++|++.+|++++|+||||||||||||+++++.-. .+.-.|+|....-
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 3567799999999999999999999999999999875321 0111234433210
Q ss_pred --chHH---------------------HHHHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 696 --ISVR---------------------DCIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 696 --~~~~---------------------d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
.++. ..++..++.. +.+......+|+++++...+++ .+.+|+++|||||++|
T Consensus 105 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 184 (258)
T PRK14268 105 FPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA 184 (258)
T ss_pred CcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 1111 1233444432 2233445667766666555444 5789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ +.+++.+.+ ++++|++||+.+.. .+|++
T Consensus 185 LD~~~~~~l-~~~l~~l~~--~~tiiivsH~~~~~~~~~d~ 222 (258)
T PRK14268 185 LDPISTARI-EDLIMNLKK--DYTIVIVTHNMQQAARISDY 222 (258)
T ss_pred cCHHHHHHH-HHHHHHHhh--CCEEEEEECCHHHHHHhCCE
Confidence 999988888 777777753 78999999998765 67776
No 180
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.67 E-value=3e-16 Score=169.51 Aligned_cols=143 Identities=18% Similarity=0.095 Sum_probs=100.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------------hhcccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------------AQVGSFVPCDRA 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------------aq~g~~vp~~~~ 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-. .+.-.|+|....
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR 96 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcc
Confidence 467799999999999999999999999999998764210 011134443321
Q ss_pred -----cch----------------------HHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002306 695 -----SIS----------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (938)
Q Consensus 695 -----~~~----------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~ 745 (938)
... .++.++..+|.. +......+.+|+++++...+++ .+.+|+++|||||+
T Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~ 176 (253)
T TIGR02323 97 DGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPT 176 (253)
T ss_pred cccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 011 112345556664 3455566778777666555444 58999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
+|+|+.....+ ..+++.+.++.|.++|++||+.+... ++++
T Consensus 177 ~~LD~~~~~~l-~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~ 218 (253)
T TIGR02323 177 GGLDVSVQARL-LDLLRGLVRDLGLAVIIVTHDLGVARLLAQR 218 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 99999988888 66666665435899999999987664 6766
No 181
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.3e-16 Score=162.72 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=89.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccc-ccccc-ccc-----------hHH---HHHHHhcC
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF-VPCDR-ASI-----------SVR---DCIFARVG 707 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~-vp~~~-~~~-----------~~~---d~i~~~~~ 707 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .-|.. +.... ... .++ ..++....
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLT 92 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCC
Confidence 456688999999999999999999999999999865321 12211 10000 000 000 00111111
Q ss_pred CchhhhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hh
Q 002306 708 AGDCQLRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LA 785 (938)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~ 785 (938)
..+++... +|+++++ ++.+.+.+.+|+++|||||++|+|+.....+ ..++..++++.+.++|++||+++... ++
T Consensus 93 ~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 168 (178)
T cd03229 93 VLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV-RALLKSLQAQLGITVVLVTHDLDEAARLA 168 (178)
T ss_pred HHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 12222111 5655555 4445555889999999999999999888777 77777777633789999999987765 66
Q ss_pred hh
Q 002306 786 HE 787 (938)
Q Consensus 786 ~~ 787 (938)
++
T Consensus 169 d~ 170 (178)
T cd03229 169 DR 170 (178)
T ss_pred CE
Confidence 65
No 182
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.67 E-value=2.7e-16 Score=180.48 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=108.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhc-----c---------cccccccc-----------cc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-----G---------SFVPCDRA-----------SI-- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~-----g---------~~vp~~~~-----------~~-- 696 (938)
++.++++|++.+|++++|+||||||||||||+++++...... | .+.|.... ..
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~ 117 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTK 117 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCH
Confidence 467799999999999999999999999999999876422110 0 01110000 00
Q ss_pred ----hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002306 697 ----SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (938)
Q Consensus 697 ----~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (938)
..++.++..+++.+.+......+|+++++...+++ .+.+|+++|||||++|+|+.....+ ..++..+.+ .|++
T Consensus 118 ~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L-lelL~el~~-~G~T 195 (549)
T PRK13545 118 EKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC-LDKMNEFKE-QGKT 195 (549)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHHh-CCCE
Confidence 01223556677776677777888887777655554 5789999999999999999988887 666666765 5899
Q ss_pred EEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 772 TLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 772 ~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+|++||+++.. .+|++ ...+.++++.
T Consensus 196 IIIVSHdl~~i~~l~Dr---------IivL~~GkIv 222 (549)
T PRK13545 196 IFFISHSLSQVKSFCTK---------ALWLHYGQVK 222 (549)
T ss_pred EEEEECCHHHHHHhCCE---------EEEEECCEEE
Confidence 99999998765 57777 4455555553
No 183
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.4e-16 Score=161.46 Aligned_cols=133 Identities=15% Similarity=0.071 Sum_probs=88.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccc-ccccccc-c---------chHH---HHHHHhcCCc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS-FVPCDRA-S---------ISVR---DCIFARVGAG 709 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~-~vp~~~~-~---------~~~~---d~i~~~~~~~ 709 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.... .|. ++..... . ++++ ..++. ....
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 4667899999999999999999999999999998764322 221 1111000 0 0000 01111 1122
Q ss_pred hhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 710 DCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 710 d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
|++ +|+++++. +.+...+.+|+++|||||++|+|+.....+ ..++..+.+ ++++|++||+++....+++
T Consensus 94 e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~--~~tii~~sh~~~~~~~~d~ 163 (171)
T cd03228 94 ENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI-LEALRALAK--GKTVIVIAHRLSTIRDADR 163 (171)
T ss_pred HHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHhcC--CCEEEEEecCHHHHHhCCE
Confidence 222 55555554 444455789999999999999999888887 677777653 6899999999887765654
No 184
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3e-16 Score=167.16 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=99.3
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------hhcccccccccc---cchH--------
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------AQVGSFVPCDRA---SISV-------- 698 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------aq~g~~vp~~~~---~~~~-------- 698 (938)
+++|++.+|++++|+||||||||||||+++++... .....|+|+... ..++
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 78888899999999999999999999999765211 001123443321 0111
Q ss_pred -------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 699 -------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 699 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
+..++..+|..+........+|+++++...+. +.+.+|+++|||||++|+|+.....+ ..++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~-~~~l~~~ 175 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM-LTLVSQV 175 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHH
Confidence 22345556666666666677887766665555 45889999999999999999888887 6666666
Q ss_pred HhcCCCeEEEEeCChHHH-HHhhh
Q 002306 765 VEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.++.|+++|++||+.+.. +++++
T Consensus 176 ~~~~~~tiii~sH~~~~~~~~~d~ 199 (232)
T PRK10771 176 CQERQLTLLMVSHSLEDAARIAPR 199 (232)
T ss_pred HHhcCCEEEEEECCHHHHHHhCCE
Confidence 543589999999998864 56776
No 185
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.7e-16 Score=175.38 Aligned_cols=153 Identities=16% Similarity=0.016 Sum_probs=111.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------h----hcccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------A----QVGSFVPCDRA- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------a----q~g~~vp~~~~- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. . +.-.++|++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 467799999999999999999999999999998765320 0 01234554421
Q ss_pred ----cch----------------------HHHHHHHhcCCch---hhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002306 695 ----SIS----------------------VRDCIFARVGAGD---CQLRGVSTFMQEMLETASILKG-ATDRSLIIIDEL 744 (938)
Q Consensus 695 ----~~~----------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp 744 (938)
.+. .+..++.++|+.+ .+......+|++|+|...|+++ +.+|+++|+|||
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 000 1224556677653 3455667888888777666554 789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
|+|+|+.....+ ..++..+.++.|.++|++|||++++ +++++ ...+..+++.
T Consensus 181 ts~LD~~~~~~i-l~lL~~l~~~~g~til~iTHdl~~~~~~adr---------i~vm~~G~iv 233 (326)
T PRK11022 181 TTALDVTIQAQI-IELLLELQQKENMALVLITHDLALVAEAAHK---------IIVMYAGQVV 233 (326)
T ss_pred CCCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 999999988888 7777777765689999999998876 67887 5555555553
No 186
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.8e-16 Score=166.39 Aligned_cols=143 Identities=15% Similarity=0.054 Sum_probs=103.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hccccccccccc---ch-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRAS---IS----- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~~---~~----- 697 (938)
.+.++++|++.+|++++|+||||+|||||++++++..... +.-.++|.+... .+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl 93 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI 93 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence 4667999999999999999999999999999997653211 011233333211 01
Q ss_pred ----------------HHHHHHHhcCCchhhhhcccchHHHHHHHH-HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 698 ----------------VRDCIFARVGAGDCQLRGVSTFMQEMLETA-SILKGATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 698 ----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~-~il~~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
.++.++.++|+.+.+......+|+++++.. .+...+.+|+++|||||++|+|+.....+ +.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l-~~~ 172 (232)
T cd03300 94 AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM-QLE 172 (232)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHH
Confidence 122445666776666666677776665554 44445889999999999999999988888 777
Q ss_pred HHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 761 CEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+..+.++.|+++|++||+.+. ..++++
T Consensus 173 l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 173 LKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 777765348999999999876 467776
No 187
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2.6e-16 Score=171.63 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=102.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------hhccccccccccc-----------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------AQVGSFVPCDRAS----------- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------aq~g~~vp~~~~~----------- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ...-.|+|.....
T Consensus 21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 100 (272)
T PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDV 100 (272)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhh
Confidence 466799999999999999999999999999999765210 0112244433100
Q ss_pred -------------------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 696 -------------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 696 -------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
-..+..++.++|+.+........+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 180 (272)
T PRK15056 101 VMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEAR 180 (272)
T ss_pred eecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 001234556677766666677788877766655554 478999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ ..++..+.+ .|.++|++||+.+.. .++++
T Consensus 181 l-~~~L~~~~~-~g~tviivsH~~~~~~~~~d~ 211 (272)
T PRK15056 181 I-ISLLRELRD-EGKTMLVSTHNLGSVTEFCDY 211 (272)
T ss_pred H-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 8 677777765 589999999998654 56655
No 188
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.66 E-value=2.9e-16 Score=177.31 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=107.7
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------------hcccccccccc---cchH--
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA---SISV-- 698 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------------q~g~~vp~~~~---~~~~-- 698 (938)
+++|++.+|++++|+||||||||||||+++++.... +.-.|+|+... .+++
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 788888999999999999999999999998653110 01123443321 1111
Q ss_pred -----------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 699 -----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 699 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
++.++.++|+.+.......++|+++++...+++ .+.+|+++|||||++|+|+.....+ +.+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l-~~~ 173 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI-LPY 173 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH-HHH
Confidence 234566677776677777888877777655555 4789999999999999999988888 777
Q ss_pred HHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 761 CEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
++.+.++.|.++|++||+.+.. .++++ ...+.++++.
T Consensus 174 L~~l~~~~g~tiiivtH~~~~~~~~~d~---------i~~l~~G~i~ 211 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQEVLRLADR---------VVVLEDGRVA 211 (354)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCE---------EEEEeCCEEE
Confidence 7777654589999999998765 57777 4555555554
No 189
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.7e-16 Score=174.77 Aligned_cols=152 Identities=13% Similarity=0.045 Sum_probs=108.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------h----------------------hccccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------A----------------------QVGSFVPCDRAS 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------a----------------------q~g~~vp~~~~~ 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. . ..-.|||+....
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 467799999999999999999999999999999865310 0 011244443210
Q ss_pred -----ch---------------------------HHHHHHHhcCCch---hhhhcccchHHHHHHHHHHHH-hCCCCcEE
Q 002306 696 -----IS---------------------------VRDCIFARVGAGD---CQLRGVSTFMQEMLETASILK-GATDRSLI 739 (938)
Q Consensus 696 -----~~---------------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~-~a~~~slv 739 (938)
.. .+..++.++|+.+ .+......+|++|+|...|.+ .+.+|+++
T Consensus 101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll 180 (330)
T PRK15093 101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEE
Confidence 00 1223455566653 234455678888777666555 47899999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEE
Q 002306 740 IIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHV 805 (938)
Q Consensus 740 llDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~ 805 (938)
|+|||++|+|+.....+ ..++..+.++.|.++||+|||++++ .++++ ...+..+++
T Consensus 181 ilDEPts~LD~~~~~~i-~~lL~~l~~~~g~tii~itHdl~~v~~~~dr---------i~vm~~G~i 237 (330)
T PRK15093 181 IADEPTNAMEPTTQAQI-FRLLTRLNQNNNTTILLISHDLQMLSQWADK---------INVLYCGQT 237 (330)
T ss_pred EEeCCCCcCCHHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhCCE---------EEEEECCEE
Confidence 99999999999988888 6777777764589999999998877 57877 544555554
No 190
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.66 E-value=3.1e-16 Score=167.72 Aligned_cols=141 Identities=16% Similarity=0.081 Sum_probs=96.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVRDC 701 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~d~ 701 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|....- .++.+.
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 95 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN 95 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHH
Confidence 466799999999999999999999999999999765311 0111344443211 111111
Q ss_pred H---------------HHhcCCch-----------hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 702 I---------------FARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 702 i---------------~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+ ....++.+ .+......+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 175 (237)
T cd03252 96 IALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175 (237)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 1 11122221 122344677777776655554 47899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..++..+.+ |+++|++||+++....+++
T Consensus 176 ~l-~~~l~~~~~--~~tiii~sH~~~~~~~~d~ 205 (237)
T cd03252 176 AI-MRNMHDICA--GRTVIIIAHRLSTVKNADR 205 (237)
T ss_pred HH-HHHHHHhcC--CCEEEEEeCCHHHHHhCCE
Confidence 88 666666653 7899999999987766665
No 191
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=5.6e-16 Score=157.42 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=110.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcc-cccccccc---cchH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVG-SFVPCDRA---SISV 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g-~~vp~~~~---~~~~ 698 (938)
.-+..+++|+++.|++++|+||||+||||+||+|++++-. +..| +|||.... .+++
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV 95 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTV 95 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcH
Confidence 3566699999999999999999999999999999765321 1122 45664331 1111
Q ss_pred --------------------HHHHHHhcC-CchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 699 --------------------RDCIFARVG-AGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 699 --------------------~d~i~~~~~-~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
.+.+|+.+- +.+.......++|++.+|+..|.+ .+++|.++|||||+-|+.|.-...|
T Consensus 96 eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I 175 (237)
T COG0410 96 EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175 (237)
T ss_pred HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHH
Confidence 333444443 334444555677766666544444 5789999999999999999988888
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
..+++.+.++.|.+||++-++...+ +++|+ ..-+.++++...
T Consensus 176 -~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr---------~yvle~Griv~~ 218 (237)
T COG0410 176 -FEAIKELRKEGGMTILLVEQNARFALEIADR---------GYVLENGRIVLS 218 (237)
T ss_pred -HHHHHHHHHcCCcEEEEEeccHHHHHHhhCE---------EEEEeCCEEEEe
Confidence 7777888865688999999997776 57877 555666666544
No 192
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.66 E-value=1.1e-16 Score=161.42 Aligned_cols=131 Identities=12% Similarity=0.027 Sum_probs=89.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh---------cccccccccccchHHHHHHHhcCCchhhhh
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------VGSFVPCDRASISVRDCIFARVGAGDCQLR 714 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq---------~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~ 714 (938)
.+.++++|++.+|++++|+||||||||||+|++++...... .-.|+|++..-. .....+++..
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~--------~~tv~~nl~~ 86 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP--------LGTLREQLIY 86 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc--------cccHHHHhhc
Confidence 45668999999999999999999999999999987542211 113445443211 1122233322
Q ss_pred -cccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 715 -GVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 715 -~~s~f~~e~~~~~~-il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
....+|+++++... +...+.+|+++|||||++|+|+.....+ ..++.. .+.++|++||+.++...+++
T Consensus 87 ~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l-~~~l~~----~~~tiiivsh~~~~~~~~d~ 156 (166)
T cd03223 87 PWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL-YQLLKE----LGITVISVGHRPSLWKFHDR 156 (166)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHH-HHHHHH----hCCEEEEEeCChhHHhhCCE
Confidence 34566666555544 4445889999999999999999887776 444443 25899999999887666665
No 193
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=3.8e-16 Score=164.24 Aligned_cols=143 Identities=12% Similarity=0.034 Sum_probs=101.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------hhcccccccccc---cchHH---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------AQVGSFVPCDRA---SISVR--- 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------aq~g~~vp~~~~---~~~~~--- 699 (938)
..+.++++|++.+|++++|+||||||||||+|+++++... ...-.|+|.... .+++.
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENL 103 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHH
Confidence 3577899999999999999999999999999999865211 011124443321 11222
Q ss_pred ---------------HHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002306 700 ---------------DCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (938)
Q Consensus 700 ---------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (938)
..++..++..+........+|+++++...++ ..+.+|+++|||||++|+|+.....+ ..+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~ 182 (214)
T PRK13543 104 HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV-NRMISA 182 (214)
T ss_pred HHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHH
Confidence 2344555655545555567776666655444 45789999999999999999888877 777777
Q ss_pred HHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 764 LVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 764 l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.+ .|.++|++||+++.. +++++
T Consensus 183 ~~~-~~~tiii~sH~~~~~~~~~~~ 206 (214)
T PRK13543 183 HLR-GGGAALVTTHGAYAAPPVRTR 206 (214)
T ss_pred HHh-CCCEEEEEecChhhhhhhcce
Confidence 766 588999999998755 56655
No 194
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.66 E-value=4e-16 Score=165.00 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=98.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccccc--hH---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SV--- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~~--~~--- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|....-+ .+
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 97 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN 97 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHH
Confidence 578899999999999999999999999999999765211 11112444332110 11
Q ss_pred -----------HHHHHHhcCCchhhh-----------hcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 699 -----------RDCIFARVGAGDCQL-----------RGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 699 -----------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+...+.+++..+.+. ...+.+|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~ 177 (221)
T cd03244 98 LDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177 (221)
T ss_pred hCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 122334455444332 345667766666555444 588999999999999999988887
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+ +.+++.+.+ +.++|++||+.+....+++
T Consensus 178 l-~~~l~~~~~--~~tii~~sh~~~~~~~~d~ 206 (221)
T cd03244 178 I-QKTIREAFK--DCTVLTIAHRLDTIIDSDR 206 (221)
T ss_pred H-HHHHHHhcC--CCEEEEEeCCHHHHhhCCE
Confidence 7 666666653 5899999999887766665
No 195
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.4e-16 Score=171.12 Aligned_cols=143 Identities=18% Similarity=0.085 Sum_probs=103.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc----cchHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA----SISVR 699 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~----~~~~~ 699 (938)
.+.++++|++.+|++++|+||||||||||+++++++... .+.-.|+|.... ...+.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 367799999999999999999999999999999754310 111234444321 11111
Q ss_pred ---------------------HHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 700 ---------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 700 ---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
+.++..+|+.+........+|+++++...+.+. +.+|+++|||||++|+|+.....+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l- 179 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI- 179 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-
Confidence 233444555555555667788777776665554 789999999999999999998888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..++..+.++.|.++|++||+.+....+++
T Consensus 180 ~~~l~~l~~~~g~tiil~sH~~~~~~~~d~ 209 (277)
T PRK13642 180 MRVIHEIKEKYQLTVLSITHDLDEAASSDR 209 (277)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence 677777776348999999999888766665
No 196
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.9e-16 Score=172.83 Aligned_cols=143 Identities=18% Similarity=0.127 Sum_probs=100.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-------------------------hcccccccccc----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------------QVGSFVPCDRA---- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-------------------------q~g~~vp~~~~---- 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|....
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 4777999999999999999999999999999997653110 01124444320
Q ss_pred cchH---------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002306 695 SISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 695 ~~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~ 751 (938)
...+ ++.++..++.. +......+.+|+++++...+++ .+.+|+++|||||++|+|+.
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 0111 11234445552 3344555677877766655554 47899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
....+ +.++..+.++.|+++|++||+.+.. +++++
T Consensus 185 ~~~~l-~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~ 220 (289)
T PRK13645 185 GEEDF-INLFERLNKEYKKRIIMVTHNMDQVLRIADE 220 (289)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 88777 6777777653489999999998754 67776
No 197
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=6.4e-16 Score=171.72 Aligned_cols=152 Identities=16% Similarity=0.098 Sum_probs=107.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------------------hhccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------------------AQVGS 687 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------------------aq~g~ 687 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 578899999999999999999999999999998754211 00012
Q ss_pred ccccccc----cchH---------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEE
Q 002306 688 FVPCDRA----SISV---------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLII 740 (938)
Q Consensus 688 ~vp~~~~----~~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvl 740 (938)
||++... ..++ +..++..+|.. +........+|+++++...+.+ .+.+|+++|
T Consensus 120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL 199 (320)
T PRK13631 120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199 (320)
T ss_pred EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3443310 0011 22345556664 3455566778877766655554 488999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 741 IDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 741 lDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
||||++|+|+.....+ ..++..+.+ .|.++|++||+.+.. .++++ ...+..+++.
T Consensus 200 LDEPtsgLD~~~~~~l-~~~L~~l~~-~g~TiiivtHd~~~~~~~adr---------i~vl~~G~i~ 255 (320)
T PRK13631 200 FDEPTAGLDPKGEHEM-MQLILDAKA-NNKTVFVITHTMEHVLEVADE---------VIVMDKGKIL 255 (320)
T ss_pred EECCccCCCHHHHHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE---------EEEEECCEEE
Confidence 9999999999988888 677777765 589999999998754 67887 5545555543
No 198
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.66 E-value=2.5e-16 Score=163.59 Aligned_cols=134 Identities=15% Similarity=0.069 Sum_probs=96.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc---chH--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS---ISV-- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~---~~~-- 698 (938)
.+.++++|++.+|++++|+||||||||||+|++++.... .++ .|+|..... .++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~~ 92 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI-LYLGHLPGLKPELSALE 92 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhhe-EEeccCcccccCCcHHH
Confidence 466789999999999999999999999999998764210 112 244432210 111
Q ss_pred ---------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q 002306 699 ---------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (938)
Q Consensus 699 ---------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~ 762 (938)
+..++..+|..+.......++|+++++...++ ..+.+|+++|||||++|+|+.....+ +.++.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 171 (198)
T TIGR01189 93 NLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL-AGLLR 171 (198)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHH
Confidence 23445566766666666677886666655554 45789999999999999999887777 67777
Q ss_pred HHHhcCCCeEEEEeCChH
Q 002306 763 HLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 763 ~l~~~~~~~~l~~TH~~e 780 (938)
.+.+ .|.++|++||++.
T Consensus 172 ~~~~-~~~tii~~sH~~~ 188 (198)
T TIGR01189 172 AHLA-RGGIVLLTTHQDL 188 (198)
T ss_pred HHHh-CCCEEEEEEcccc
Confidence 6665 5889999999874
No 199
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.66 E-value=4e-16 Score=169.68 Aligned_cols=143 Identities=20% Similarity=0.177 Sum_probs=101.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------------------------hcccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------------QVGSFVPCDRA- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------------------------q~g~~vp~~~~- 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... ....|+|....
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 4566999999999999999999999999999998753211 01124443311
Q ss_pred --cchHH-------------------------HHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-C---------CCCc
Q 002306 695 --SISVR-------------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILKG-A---------TDRS 737 (938)
Q Consensus 695 --~~~~~-------------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a---------~~~s 737 (938)
..++. ..++..+|..+......+++|+++++...+.+. + .+|+
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~ 174 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174 (272)
T ss_pred CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCC
Confidence 11222 223444555555555667788777776666555 4 4899
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 738 LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 738 lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++|||||++|+|+.....+ ..++..+.++.|.++|++||+.+.. .++++
T Consensus 175 lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tviiisH~~~~~~~~~d~ 224 (272)
T PRK13547 175 YLLLDEPTAALDLAHQHRL-LDTVRRLARDWNLGVLAIVHDPNLAARHADR 224 (272)
T ss_pred EEEEcCccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 9999999999999988888 6677777653489999999998765 57776
No 200
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.4e-16 Score=176.54 Aligned_cols=139 Identities=20% Similarity=0.127 Sum_probs=102.9
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------------hccccccccccc---ch---
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRAS---IS--- 697 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------------q~g~~vp~~~~~---~~--- 697 (938)
+++|++.+|++++|+||||||||||||+++++.... ..-.|+|+...- ..
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 788888999999999999999999999998653110 001233433211 11
Q ss_pred ------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 698 ------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 698 ------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
.++.++..+|..+........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +.+++.+
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l-~~~L~~l 174 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL-LPYLERL 174 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH-HHHHHHH
Confidence 1334567778777777777888877777655555 4789999999999999999988888 6677777
Q ss_pred HhcCCCeEEEEeCChHH-HHHhhh
Q 002306 765 VEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
.++.|.++|++||+.+. ..++++
T Consensus 175 ~~~~g~tii~vTHd~~~~~~~~d~ 198 (352)
T PRK11144 175 AREINIPILYVSHSLDEILRLADR 198 (352)
T ss_pred HHhcCCeEEEEecCHHHHHHhCCE
Confidence 65458999999999864 467777
No 201
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=3.8e-16 Score=167.37 Aligned_cols=137 Identities=18% Similarity=0.094 Sum_probs=96.2
Q ss_pred cccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh--------cccccccccc---cchH-----------------HHH
Q 002306 650 KLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------VGSFVPCDRA---SISV-----------------RDC 701 (938)
Q Consensus 650 ~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq--------~g~~vp~~~~---~~~~-----------------~d~ 701 (938)
.+++.+|++++|+||||||||||||+++++..... .-.|+|+... ..++ ...
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 33445799999999999999999999987532110 1124443321 1111 233
Q ss_pred HHHhcCCchhhhhcccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChH
Q 002306 702 IFARVGAGDCQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 702 i~~~~~~~d~~~~~~s~f~~e~~~~~~-il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~e 780 (938)
++..+|..+......+.+|+++++... +...+.+|+++|||||++|+|+.....+ ..++..+.++.+.++|++||+.+
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA-SKVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHH
Confidence 556667766666677788876666544 4445889999999999999999988888 66666666545899999999987
Q ss_pred HHH-Hhhh
Q 002306 781 LTA-LAHE 787 (938)
Q Consensus 781 l~~-~~~~ 787 (938)
+.. ++++
T Consensus 178 ~~~~~~d~ 185 (246)
T cd03237 178 MIDYLADR 185 (246)
T ss_pred HHHHhCCE
Confidence 664 5655
No 202
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=5.9e-16 Score=161.05 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=99.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhcccccccccc---cchH--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRA---SISV-- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~---~~~~-- 698 (938)
.+.++++|++.+|++++|+||||||||||+++++++.. ..++| |+|.... ..++
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC-FVGHRSGINPYLTLRE 93 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheE-EeccccccCcCCCHHH
Confidence 45668999999999999999999999999999876421 11222 3332211 1111
Q ss_pred --------------HHHHHHhcCCchhhhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002306 699 --------------RDCIFARVGAGDCQLRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (938)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (938)
++.++..++..+........+|+++++ ++.+.+.+.+|+++|||||++|+|+.....+ ..++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l-~~~l~~ 172 (200)
T PRK13540 94 NCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI-ITKIQE 172 (200)
T ss_pred HHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH-HHHHHH
Confidence 234455556555445555667755544 5555556899999999999999999888888 666666
Q ss_pred HHhcCCCeEEEEeCChHHHHHhhh
Q 002306 764 LVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 764 l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.+ .|+++|++||+.+....+|.
T Consensus 173 ~~~-~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 173 HRA-KGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred HHH-cCCEEEEEeCCchhccccch
Confidence 665 58999999999888766654
No 203
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.6e-16 Score=167.36 Aligned_cols=141 Identities=15% Similarity=0.084 Sum_probs=97.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--h--hhc-----------------------cccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M--AQV-----------------------GSFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--l--aq~-----------------------g~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++.- . ... -.|+|+...-
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 46789999999999999999999999999999987531 0 011 1234433210
Q ss_pred -chHHHH----------------------HHHhcCCch----hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 696 -ISVRDC----------------------IFARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d~----------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
..+.+. ++..+|..+ .+......+|+++++...+++ .+.+|+++|||||++|
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~ 179 (253)
T PRK14242 100 PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179 (253)
T ss_pred cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 112222 222334321 223445667777766655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..+.+ +.++|++||+.+.. +++++
T Consensus 180 LD~~~~~~l-~~~l~~~~~--~~tvii~tH~~~~~~~~~d~ 217 (253)
T PRK14242 180 LDPIATQKI-EELIHELKA--RYTIIIVTHNMQQAARVSDV 217 (253)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEEecHHHHHHhCCE
Confidence 999988888 667777753 68999999998765 67776
No 204
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.66 E-value=5.2e-16 Score=168.87 Aligned_cols=144 Identities=17% Similarity=0.082 Sum_probs=101.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc-----
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA----- 694 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~----- 694 (938)
..+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|+...
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 3567799999999999999999999999999999764210 011223333320
Q ss_pred cch----------------------HHHHHHHhcCCc-hhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCCh
Q 002306 695 SIS----------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTST 750 (938)
Q Consensus 695 ~~~----------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~ 750 (938)
... .++.++.++|.. +........+|+++++. +.+...+.+|+++|||||++|+|+
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 001 123455666664 34555666777666555 444455889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.....+ ..+++.+.++.++++|++||+.+.. .++++
T Consensus 185 ~~~~~~-~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~ 221 (268)
T PRK10419 185 VLQAGV-IRLLKKLQQQFGTACLFITHDLRLVERFCQR 221 (268)
T ss_pred HHHHHH-HHHHHHHHHHcCcEEEEEECCHHHHHHhCCE
Confidence 887777 6667666653589999999998766 47776
No 205
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.65 E-value=3.5e-16 Score=158.35 Aligned_cols=120 Identities=14% Similarity=0.067 Sum_probs=80.5
Q ss_pred ccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHH-H
Q 002306 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETAS-I 729 (938)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~-i 729 (938)
+++++|++++|+||||||||||+|+++++.... .|...- ....++.. .+.. .+|+++++... +
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~-~g~~i~~~---------~q~~-----~LSgGq~qrv~la 83 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEW-DGITPVYK---------PQYI-----DLSGGELQRVAIA 83 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEE-CCEEEEEE---------cccC-----CCCHHHHHHHHHH
Confidence 666899999999999999999999997754221 121100 00001100 0000 15655555444 4
Q ss_pred HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 730 l~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
...+.+|+++|||||++|+|+.....+ ..++..+.++.+.++|++||+++... ++++
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l-~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 141 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNA-ARAIRRLSEEGKKTALVVEHDLAVLDYLSDR 141 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHH-HHHHHHHHHcCCCEEEEEECCHHHHHHhCCE
Confidence 445789999999999999999988888 55666665533489999999987654 5655
No 206
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.65 E-value=4.7e-16 Score=165.00 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=98.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---hhh-----------------cccccccccc---cchHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---MAQ-----------------VGSFVPCDRA---SISVR 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---laq-----------------~g~~vp~~~~---~~~~~ 699 (938)
..+.++++|++.+|++++|+||||||||||+|++++... ... ...|+|.... .+++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 356778999999999999999999999999999987643 110 1123443321 11222
Q ss_pred HH-------------------------HHHhcCCchhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 700 DC-------------------------IFARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 700 d~-------------------------i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
+. ++..++..+........+|+++++. +.+...+.+|+++|||||++|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 22 2222333333333445667665554 444455789999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCCh--HHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~--el~~~~~~ 787 (938)
..+ +.++..+.+ .+.++|++||+. ++.+++++
T Consensus 180 ~~~-~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 180 LNL-VSTLSQLAR-RNRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred HHH-HHHHHHHHH-CCCEEEEEecCCCHHHHHhCCE
Confidence 888 667776765 488999999996 56778887
No 207
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.65 E-value=5.5e-16 Score=183.45 Aligned_cols=152 Identities=12% Similarity=0.019 Sum_probs=111.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------------------hcccccccccc---------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA--------- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------------q~g~~vp~~~~--------- 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.++|+...
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 4677999999999999999999999999999997653110 00123332210
Q ss_pred --cch-------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 695 --SIS-------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 695 --~~~-------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
.+. .+..++.++|..+......+++|+++++...+++. +.+|+++||||||+|+|+.....+ .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l-~ 175 (490)
T PRK10938 97 DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL-A 175 (490)
T ss_pred hccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 011 13356777888777777888999888777666654 789999999999999999988888 7
Q ss_pred HHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 759 AICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.++..+.+ .|.++|++||+.+.. ++|++ ...+.++++.
T Consensus 176 ~~l~~~~~-~g~tvii~tH~~~~~~~~~d~---------v~~l~~G~i~ 214 (490)
T PRK10938 176 ELLASLHQ-SGITLVLVLNRFDEIPDFVQF---------AGVLADCTLA 214 (490)
T ss_pred HHHHHHHh-cCCeEEEEeCCHHHHHhhCCE---------EEEEECCEEE
Confidence 77777776 589999999997654 57776 4445555543
No 208
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.7e-16 Score=169.01 Aligned_cols=142 Identities=13% Similarity=0.073 Sum_probs=98.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--h--hhc-----------------------cccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M--AQV-----------------------GSFVPCDRAS 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--l--aq~-----------------------g~~vp~~~~~ 695 (938)
..+.++++|++.+|++++|+||||||||||||+++++.- . ... -.|+|++..-
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 357789999999999999999999999999999987521 0 011 1234433211
Q ss_pred c--hHHH----------------------HHHHhcCC----chhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCC
Q 002306 696 I--SVRD----------------------CIFARVGA----GDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGR 746 (938)
Q Consensus 696 ~--~~~d----------------------~i~~~~~~----~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~ 746 (938)
+ .+.+ .++..+|. .+.+....+++|+++++...+. ..+.+|+++|||||++
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~ 211 (286)
T PRK14275 132 FPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTS 211 (286)
T ss_pred CccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1 1111 22333343 2333445567776666655554 4578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+|+.....+ ..++..+.. +.++|++||+++.. .++++
T Consensus 212 gLD~~~~~~l-~~~L~~~~~--~~tvIivsH~~~~~~~~~d~ 250 (286)
T PRK14275 212 ALDPKATAKI-EDLIQELRG--SYTIMIVTHNMQQASRVSDY 250 (286)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHHhCCE
Confidence 9999888877 667777654 58999999998775 56776
No 209
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.65 E-value=4.3e-16 Score=184.89 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=113.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------------------hc-ccccccccc---cch-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QV-GSFVPCDRA---SIS- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------------q~-g~~vp~~~~---~~~- 697 (938)
..+.++++|++.+|++++|+||||||||||||+++++.... .. -.|+|+... .+.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 103 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence 34677999999999999999999999999999997653110 00 124444321 111
Q ss_pred ----------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 698 ----------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 698 ----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
.+..++..+|..+......+++|+++++...+++ .+.+|+++|||||++|+|+.....+ ..+
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l-~~~ 182 (510)
T PRK15439 104 KENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL-FSR 182 (510)
T ss_pred HHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHH
Confidence 1234566677776667777888888877766665 4789999999999999999988888 777
Q ss_pred HHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 761 CEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
++.+++ .|.++|++||+.+.. .+|++ ...+.++++..
T Consensus 183 l~~~~~-~g~tiiivtHd~~~~~~~~d~---------i~~l~~G~i~~ 220 (510)
T PRK15439 183 IRELLA-QGVGIVFISHKLPEIRQLADR---------ISVMRDGTIAL 220 (510)
T ss_pred HHHHHH-CCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 777776 589999999998765 67887 55666666643
No 210
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.65 E-value=3.7e-16 Score=163.15 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=94.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc--------cccccccc--cchHHH-------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG--------SFVPCDRA--SISVRD------------- 700 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g--------~~vp~~~~--~~~~~d------------- 700 (938)
.+.++++|++++|++++|+||||||||||||+++++.-. .-| .|+|.... ..++.+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 356689999999999999999999999999999876421 111 34444421 111111
Q ss_pred -HHHHhcCCchhh-----------hhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002306 701 -CIFARVGAGDCQ-----------LRGVSTFMQEMLETASI-LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (938)
Q Consensus 701 -~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~i-l~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (938)
.....+++.+.+ ......+|+++++...+ ...+.+|+++|+|||++|+|+.....+...++..+.+
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~- 176 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL- 176 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-
Confidence 112222322222 22335666666555444 4458899999999999999998777775546665554
Q ss_pred CCCeEEEEeCChHHHHHhhh
Q 002306 768 IRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 768 ~~~~~l~~TH~~el~~~~~~ 787 (938)
.|.++|++||+++....+++
T Consensus 177 ~~~tvi~~sh~~~~~~~~d~ 196 (204)
T cd03250 177 NNKTRILVTHQLQLLPHADQ 196 (204)
T ss_pred CCCEEEEEeCCHHHHhhCCE
Confidence 48999999999887665554
No 211
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.8e-16 Score=166.38 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=102.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH--hh-----h--------------------hccccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--LM-----A--------------------QVGSFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--~l-----a--------------------q~g~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++. .. + +.-.|+|....-
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF 96 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccC
Confidence 4677999999999999999999999999999997641 11 0 011234433210
Q ss_pred -chHH----------------------HHHHHhcCCch----hhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002306 696 -ISVR----------------------DCIFARVGAGD----CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~----------------------d~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~g 747 (938)
..+. +.++..+|..+ .+......+|+++++...++ ..+.+|+++|||||++|
T Consensus 97 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 176 (250)
T PRK14245 97 PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176 (250)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0111 12334444432 23344456776666654444 45889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+|+.....+ ..++..+.+ ++++|++||+.+.. .++++ ...+.++++.
T Consensus 177 LD~~~~~~l-~~~l~~~~~--~~tiiivtH~~~~~~~~~d~---------v~~l~~G~~~ 224 (250)
T PRK14245 177 LDPISTAKV-EELIHELKK--DYTIVIVTHNMQQAARVSDK---------TAFFYMGEMV 224 (250)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHhhCCE---------EEEEECCEEE
Confidence 999888887 666776653 68999999998765 67777 5555665554
No 212
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.65 E-value=5.9e-16 Score=167.53 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=98.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhc-----c--ccccccc---ccchHH--------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-----G--SFVPCDR---ASISVR-------------- 699 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~-----g--~~vp~~~---~~~~~~-------------- 699 (938)
.+.++++|++.+|++++|+|||||||||||++++++...... | .+++... ..+++.
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~ 117 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR 117 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence 466789999999999999999999999999999876422110 0 1111110 011111
Q ss_pred -------HHHHHhcCCchhhhhcccchHHHHHHHH-HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002306 700 -------DCIFARVGAGDCQLRGVSTFMQEMLETA-SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (938)
Q Consensus 700 -------d~i~~~~~~~d~~~~~~s~f~~e~~~~~-~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (938)
+.++...+..+.+......+|+++++.. .+...+.+|+++|||||++|+|+.....+ ..++..+.+ .|.+
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l-~~~L~~~~~-~g~t 195 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC-LDKIYEFKE-QNKT 195 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH-HHHHHHHHH-CCCE
Confidence 1233444555555566677776666554 44445789999999999999999877777 666666665 5899
Q ss_pred EEEEeCChHHH-HHhhh
Q 002306 772 TLFATHFHELT-ALAHE 787 (938)
Q Consensus 772 ~l~~TH~~el~-~~~~~ 787 (938)
+|++||+.+.. .++++
T Consensus 196 iIiisH~~~~i~~~~d~ 212 (264)
T PRK13546 196 IFFVSHNLGQVRQFCTK 212 (264)
T ss_pred EEEEcCCHHHHHHHcCE
Confidence 99999998764 56665
No 213
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.65 E-value=4.9e-16 Score=166.24 Aligned_cols=141 Identities=12% Similarity=-0.005 Sum_probs=95.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVRDC 701 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~d~ 701 (938)
.+.++++|++.+|++++|+||||||||||+++++++... .+.-.|+|+...- ..+.+.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHH
Confidence 466789999999999999999999999999999865311 0112344433210 111111
Q ss_pred H---------------HHhcCCch-----------hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 702 I---------------FARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 702 i---------------~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+ ....++.+ ........+|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~ 176 (238)
T cd03249 97 IRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176 (238)
T ss_pred hhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1 11112111 122233567776666655554 57899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ +.+++.+. .|+++|++||+.+....+++
T Consensus 177 ~l-~~~l~~~~--~g~~vi~~sh~~~~~~~~d~ 206 (238)
T cd03249 177 LV-QEALDRAM--KGRTTIVIAHRLSTIRNADL 206 (238)
T ss_pred HH-HHHHHHhc--CCCEEEEEeCCHHHHhhCCE
Confidence 87 67777665 48999999999887777766
No 214
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=7.6e-16 Score=148.78 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=107.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh----------------hhhccccccccccc------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL----------------MAQVGSFVPCDRAS------------ 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~----------------laq~g~~vp~~~~~------------ 695 (938)
-|.+.+++....|.++.|+|.+|||||||||+|..+.- ....|..+|++...
T Consensus 20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF 99 (256)
T COG4598 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF 99 (256)
T ss_pred hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence 45668999999999999999999999999999865421 11234444444311
Q ss_pred ------------------------------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 002306 696 ------------------------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDEL 744 (938)
Q Consensus 696 ------------------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp 744 (938)
+.....++.++|..+........++++.++.+.|.++ |.+|+++|+|||
T Consensus 100 Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEP 179 (256)
T COG4598 100 QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEP 179 (256)
T ss_pred hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCC
Confidence 1112346778888888887788888888887777765 889999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 745 GRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
|+.+||.---.+ ..++..|++ .|.|.+++||.+.+++
T Consensus 180 TSALDPElVgEV-Lkv~~~LAe-EgrTMv~VTHEM~FAR 216 (256)
T COG4598 180 TSALDPELVGEV-LKVMQDLAE-EGRTMVVVTHEMGFAR 216 (256)
T ss_pred cccCCHHHHHHH-HHHHHHHHH-hCCeEEEEeeehhHHH
Confidence 999999877776 788899998 6999999999998875
No 215
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=4.4e-16 Score=166.20 Aligned_cols=141 Identities=17% Similarity=0.057 Sum_probs=94.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVRDC 701 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~d~ 701 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|....- .++.+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 466789999999999999999999999999999765311 0111244433211 112221
Q ss_pred H---------------HHhcC-----------CchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002306 702 I---------------FARVG-----------AGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 702 i---------------~~~~~-----------~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+ ....+ ...........+|+++++...++ ..+.+|+++|||||++|+|+....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1 11111 11112233456676665554444 458899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..++..+.+ +.++|++||+++....+++
T Consensus 176 ~l-~~~l~~~~~--~~tii~~sh~~~~~~~~d~ 205 (234)
T cd03251 176 LV-QAALERLMK--NRTTFVIAHRLSTIENADR 205 (234)
T ss_pred HH-HHHHHHhcC--CCEEEEEecCHHHHhhCCE
Confidence 88 777777753 7899999999887766766
No 216
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.65 E-value=6e-16 Score=163.97 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=99.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------------hhccccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------------AQVGSFVPCDRAS 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------------aq~g~~vp~~~~~ 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. .+...|+|+....
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 456789999999999999999999999999998754210 0111244443211
Q ss_pred c---hH---------------------HHHHHHhcCCchhh-hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002306 696 I---SV---------------------RDCIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (938)
Q Consensus 696 ~---~~---------------------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd 749 (938)
. .+ +..++..+|..+.. ......+|+++++...+.+ .+.+|+++|||||++|+|
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 0 01 11234555654432 3455667766666555544 578999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.....+ ..++..+.+ .|+++|++||+.++. .++++
T Consensus 182 ~~~~~~l-~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~ 218 (224)
T TIGR02324 182 AANRQVV-VELIAEAKA-RGAALIGIFHDEEVRELVADR 218 (224)
T ss_pred HHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhcce
Confidence 9988888 666777765 589999999998876 46765
No 217
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.6e-16 Score=166.42 Aligned_cols=142 Identities=17% Similarity=0.119 Sum_probs=97.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hc-----------------------ccccccccc-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QV-----------------------GSFVPCDRA- 694 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~-----------------------g~~vp~~~~- 694 (938)
..+.++++|++.+|++++|+||||||||||||+++++.-.. .. -.|+|+...
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 35778999999999999999999999999999998754310 01 123333321
Q ss_pred -cchHHHHH----------------------HHhcCC----chhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002306 695 -SISVRDCI----------------------FARVGA----GDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (938)
Q Consensus 695 -~~~~~d~i----------------------~~~~~~----~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~ 746 (938)
..++.+.+ +..++. .+......+.+|+++++...+.+ .+.+|+++|||||++
T Consensus 100 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~ 179 (254)
T PRK14273 100 FLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179 (254)
T ss_pred ccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 11222222 222232 12233445667777766655554 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+|+.....+ +.++..+.+ +.++|++||+.+.. .++++
T Consensus 180 ~LD~~~~~~l-~~~l~~~~~--~~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 180 ALDPISTGKI-EELIINLKE--SYTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred ccCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCCE
Confidence 9999988888 667777753 68999999998765 56776
No 218
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=7.3e-16 Score=163.90 Aligned_cols=141 Identities=17% Similarity=0.074 Sum_probs=94.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccccc--hHHH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SVRD- 700 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~~--~~~d- 700 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ...-.|+|....-+ .+.+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence 467799999999999999999999999999999765311 01112444332100 1111
Q ss_pred --------------HHHHhcCCch-----------hhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002306 701 --------------CIFARVGAGD-----------CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 701 --------------~i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
..+..+++.+ ........+|+++++...+. ..+.+|+++|||||++|+|+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~ 176 (229)
T cd03254 97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176 (229)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1112222221 11222356666666554444 458899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..++..+. .+.++|++||+++....+++
T Consensus 177 ~l-~~~l~~~~--~~~tii~~sh~~~~~~~~d~ 206 (229)
T cd03254 177 LI-QEALEKLM--KGRTSIIIAHRLSTIKNADK 206 (229)
T ss_pred HH-HHHHHHhc--CCCEEEEEecCHHHHhhCCE
Confidence 88 66677665 37899999999887766665
No 219
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=7.8e-16 Score=147.81 Aligned_cols=152 Identities=19% Similarity=0.129 Sum_probs=115.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------h-----------------hhcccc----------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------M-----------------AQVGSF---------- 688 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------l-----------------aq~g~~---------- 688 (938)
.|..+++|.++.|+.++|+||+||||||||-.++++-- . .++|..
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 57779999999999999999999999999998875421 0 122211
Q ss_pred -------ccccc------ccchHHHHHHHhcCCchhhhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002306 689 -------VPCDR------ASISVRDCIFARVGAGDCQLRGVSTFMQ-EMLETASILKGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 689 -------vp~~~------~~~~~~d~i~~~~~~~d~~~~~~s~f~~-e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+|.+- ........++.++|..+.+......+++ |+++++.+.+.+.+|.+++.||||.++|...|.
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~ 183 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence 12111 0122345688999999998888888885 555555555668999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~ 805 (938)
.|+.- +-.+..+.|.+.+++|||+.++.-|++ .-.+..+++
T Consensus 184 ~iaDL-lF~lnre~G~TlVlVTHD~~LA~Rc~R---------~~r~~~G~l 224 (228)
T COG4181 184 KIADL-LFALNRERGTTLVLVTHDPQLAARCDR---------QLRLRSGRL 224 (228)
T ss_pred HHHHH-HHHHhhhcCceEEEEeCCHHHHHhhhh---------eeeeeccee
Confidence 99554 444555589999999999999999998 666666654
No 220
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=5.4e-16 Score=184.10 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=112.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----h-------------------hcccccccccc---cc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----A-------------------QVGSFVPCDRA---SI 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----a-------------------q~g~~vp~~~~---~~ 696 (938)
..+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|++.. .+
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKEL 97 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCC
Confidence 3577899999999999999999999999999999876431 0 10123333210 01
Q ss_pred h------------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q 002306 697 S------------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 697 ~------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~ 751 (938)
+ .+..++.++|..+......+++|+++++...+++. +.+|+++|||||++|+|+.
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~ 177 (506)
T PRK13549 98 SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTES 177 (506)
T ss_pred cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 1 12345566676655666678888877776665554 7899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
....+ +.++..+.+ .|.++|++||+.+.. .++++ ...+.++++..
T Consensus 178 ~~~~l-~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~---------v~~l~~G~i~~ 223 (506)
T PRK13549 178 ETAVL-LDIIRDLKA-HGIACIYISHKLNEVKAISDT---------ICVIRDGRHIG 223 (506)
T ss_pred HHHHH-HHHHHHHHH-CCCEEEEEeCcHHHHHHhcCE---------EEEEECCEEee
Confidence 88888 777777765 589999999997765 57877 55566666543
No 221
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.64 E-value=4.9e-16 Score=173.31 Aligned_cols=143 Identities=16% Similarity=0.101 Sum_probs=104.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc-----c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA-----S 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~-----~ 695 (938)
.+.++++|++.+|++++|+||||||||||+|+|+++... ...-.||+++.. .
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 467899999999999999999999999999998754210 001124443320 1
Q ss_pred chH-----------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 002306 696 ISV-----------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTST 750 (938)
Q Consensus 696 ~~~-----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~ 750 (938)
..+ +..++.++|.. +........+|++|+|...|+++ +.+|+++|+|||++|+|+
T Consensus 115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~ 194 (331)
T PRK15079 115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDV 194 (331)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 111 12345556663 33455667788888777666554 889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.....+ ..++..+.++.|.++||+|||++++ .++++
T Consensus 195 ~~~~~i-~~lL~~l~~~~~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 195 SIQAQV-VNLLQQLQREMGLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred HHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 988888 6777777664589999999998877 47877
No 222
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=6.7e-16 Score=164.81 Aligned_cols=142 Identities=20% Similarity=0.168 Sum_probs=101.2
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hccccccccccc---chH-----
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRAS---ISV----- 698 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~~---~~~----- 698 (938)
+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|+...- ..+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 466889999999999999999999999999997652110 011233332210 011
Q ss_pred ----------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002306 699 ----------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (938)
Q Consensus 699 ----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il 761 (938)
+..++..+|+.+.+.....++|+++++...+. +.+.+|+++|+|||++|+|+.....+ +.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l-~~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL-REEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH-HHHH
Confidence 12345556666666666677886666655444 45889999999999999999888877 7777
Q ss_pred HHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 762 EHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.+..+.|+++|++||+.+.. +++++
T Consensus 173 ~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 173 KKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 777653589999999998764 57776
No 223
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.64 E-value=4.6e-16 Score=165.14 Aligned_cols=141 Identities=15% Similarity=0.088 Sum_probs=97.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chHH--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVR-- 699 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~-- 699 (938)
.+.++++|++.+|++++|+||||||||||+++++++... .+.-.|+|....- ..+.
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~n 107 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHH
Confidence 577899999999999999999999999999999865311 0111233332210 0111
Q ss_pred ----------------------HHHHHhc--CCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHH
Q 002306 700 ----------------------DCIFARV--GAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 700 ----------------------d~i~~~~--~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
..++..+ |..+.+......+|+++++...++ ..+.+|+++|||||++|+|+....
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 187 (226)
T cd03248 108 IAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187 (226)
T ss_pred hccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1222333 444444555566776666655444 458899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..++..+.+ +.++|++||+++....+++
T Consensus 188 ~l-~~~l~~~~~--~~tii~~sh~~~~~~~~d~ 217 (226)
T cd03248 188 QV-QQALYDWPE--RRTVLVIAHRLSTVERADQ 217 (226)
T ss_pred HH-HHHHHHHcC--CCEEEEEECCHHHHHhCCE
Confidence 88 666666654 5899999999988766655
No 224
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.64 E-value=6.6e-16 Score=183.62 Aligned_cols=153 Identities=15% Similarity=0.082 Sum_probs=111.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------h-hcccccccccc---cch--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------A-QVGSFVPCDRA---SIS-- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------a-q~g~~vp~~~~---~~~-- 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|+... .+.
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVL 98 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHH
Confidence 467799999999999999999999999999999765310 0 11124443210 011
Q ss_pred --------------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 002306 698 --------------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTST 750 (938)
Q Consensus 698 --------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~ 750 (938)
.+..++.++|..+......+++|+++++...+.+. +.+|+++||||||+|+|+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~ 178 (510)
T PRK09700 99 ENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178 (510)
T ss_pred HHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 12235566676666666778888888777666654 789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.....+ ..++..+.+ .|.++|++||+.+.. .++++ ...+.++++..
T Consensus 179 ~~~~~l-~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~---------v~~l~~G~i~~ 225 (510)
T PRK09700 179 KEVDYL-FLIMNQLRK-EGTAIVYISHKLAEIRRICDR---------YTVMKDGSSVC 225 (510)
T ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEee
Confidence 888888 777888876 589999999997765 57777 55566666543
No 225
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.64 E-value=6.6e-16 Score=183.11 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=112.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc---cch--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SIS-- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~---~~~-- 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... .++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIA 97 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHH
Confidence 467799999999999999999999999999999765311 011123333210 001
Q ss_pred -----------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 698 -----------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 698 -----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
.+..++.++|..+......+++|+++++...+++ .+.+|+++||||||+|+|+...
T Consensus 98 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 177 (501)
T PRK10762 98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177 (501)
T ss_pred HHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHH
Confidence 1234566677766666677888888777766655 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
..+ +.++..+.+ .|.++|++||+.+.. .+|++ ...+.++++..
T Consensus 178 ~~l-~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~---------i~~l~~G~i~~ 221 (501)
T PRK10762 178 ESL-FRVIRELKS-QGRGIVYISHRLKEIFEICDD---------VTVFRDGQFIA 221 (501)
T ss_pred HHH-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE---------EEEEeCCEEEE
Confidence 888 777777776 589999999997655 67887 55566666543
No 226
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4e-16 Score=153.26 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=118.6
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---------------------------hhh---------
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------------MAQ--------- 684 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------------laq--------- 684 (938)
+.+.|.+++++++++|.++.|+|||||||||||-.++.+.- +-|
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 34567779999999999999999999999999999865421 111
Q ss_pred ------cccccccccccch-----HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002306 685 ------VGSFVPCDRASIS-----VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 685 ------~g~~vp~~~~~~~-----~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~ 752 (938)
.|- .|-+..++. .+++.+..+.+.+-..+.+-.+|++++|.+.+... +.+.+.|+||||.++||...
T Consensus 92 V~dLv~FGR-fPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkH 170 (252)
T COG4604 92 VRDLVGFGR-FPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170 (252)
T ss_pred HHHHhhcCC-CcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHH
Confidence 111 233333332 23455566777777777788889999999888775 67889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-HhhhcccccccccccceeEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHV 805 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~~~~~~~~~~~~~v~~~~~ 805 (938)
..++ ..+++.++++.|.+++++-||..++. ++++ ...++++.+
T Consensus 171 sv~i-Mk~Lrrla~el~KtiviVlHDINfAS~YsD~---------IVAlK~G~v 214 (252)
T COG4604 171 SVQI-MKILRRLADELGKTIVVVLHDINFASCYSDH---------IVALKNGKV 214 (252)
T ss_pred HHHH-HHHHHHHHHHhCCeEEEEEecccHHHhhhhh---------eeeecCCEE
Confidence 9999 88899998888999999999998875 6666 555555554
No 227
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=165.81 Aligned_cols=141 Identities=15% Similarity=0.118 Sum_probs=97.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hhcc-----------------------cccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq~g-----------------------~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... ..-| .|+|+...
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 467799999999999999999999999999999876420 0111 23333321
Q ss_pred cchHHH----------------------HHHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 695 SISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 695 ~~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
..++.+ .++..++.. +.......++|+++++...+++ .+.+|+++|||||++|
T Consensus 107 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 186 (260)
T PRK10744 107 PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA 186 (260)
T ss_pred cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence 011111 233334432 2234445667766666555444 5789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..+.+ +.++|++||+.+.. .++++
T Consensus 187 LD~~~~~~l-~~~L~~~~~--~~tiii~sH~~~~~~~~~d~ 224 (260)
T PRK10744 187 LDPISTGRI-EELITELKQ--DYTVVIVTHNMQQAARCSDY 224 (260)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHHhCCE
Confidence 999888777 666666653 68999999998765 57776
No 228
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=8.9e-16 Score=171.10 Aligned_cols=153 Identities=15% Similarity=0.068 Sum_probs=110.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc-----c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA-----S 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~-----~ 695 (938)
.+.++++|++..|++++|+||||||||||+++++++... ...-.|||+... .
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 567899999999999999999999999999998764210 001124444321 0
Q ss_pred c----------------------hHHHHHHHhcCCch-hhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q 002306 696 I----------------------SVRDCIFARVGAGD-CQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 696 ~----------------------~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~ 751 (938)
+ ..+..++.++|+.+ ........+|++|++...|.++ +.+|+++|+||||+|+|+.
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~ 188 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS 188 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence 0 01234566677643 4455667888888776665554 7899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-HhhhcccccccccccceeEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
....+ ..++..+.++.|.++|++|||++++. ++++ ...+..+++.
T Consensus 189 ~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~adr---------v~vm~~G~iv 234 (327)
T PRK11308 189 VQAQV-LNLMMDLQQELGLSYVFISHDLSVVEHIADE---------VMVMYLGRCV 234 (327)
T ss_pred HHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 88888 66677776646899999999988774 7877 5555555553
No 229
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.9e-16 Score=165.16 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=98.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hhcc---------------------cccccccc---c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG---------------------SFVPCDRA---S 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq~g---------------------~~vp~~~~---~ 695 (938)
.+.++++|++.+|++++|+||||||||||+++++++.-. ...| .|+|.... .
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 467799999999999999999999999999999876421 0011 23443321 1
Q ss_pred chHHHH-----------------------HHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 696 ISVRDC-----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 696 ~~~~d~-----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
.++.+. ++..+|.. +.+......+|+++++...+++ .+.+|+++|||||++|
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~ 176 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTAN 176 (250)
T ss_pred CcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 122222 23334432 1234445677777766655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..+++.+.+ +.++|++||+.+.. .++++
T Consensus 177 LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14247 177 LDPENTAKI-ESLFLELKK--DMTIVLVTHFPQQAARISDY 214 (250)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhcCE
Confidence 999988888 666676653 78999999998765 57776
No 230
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=4.7e-16 Score=155.34 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=87.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 723 (938)
.+.++++|++.+|++++|+||||||||||+++++++....+.-.++............+...++... .+++++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~-------qlS~G~ 85 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP-------QLSGGQ 85 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe-------eCCHHH
Confidence 3556788888999999999999999999999998754321111111111100000111111222111 155444
Q ss_pred HH-HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHH-hhh
Q 002306 724 LE-TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTAL-AHE 787 (938)
Q Consensus 724 ~~-~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~-~~~ 787 (938)
++ ++.+...+.+|+++|+|||++|+|+.....+ +.++..+.+ .+++++++||+++.... +++
T Consensus 86 ~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l-~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~ 149 (157)
T cd00267 86 RQRVALARALLLNPDLLLLDEPTSGLDPASRERL-LELLRELAE-EGRTVIIVTHDPELAELAADR 149 (157)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 44 4444455789999999999999999888887 666666666 37899999999877654 454
No 231
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.64 E-value=7.9e-16 Score=183.38 Aligned_cols=143 Identities=12% Similarity=0.022 Sum_probs=104.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-hhhc-------------------------------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-MAQV------------------------------------- 685 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-laq~------------------------------------- 685 (938)
.+.++++|++.+|++++|+||||||||||||+++++.. ...-
T Consensus 14 ~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 93 (520)
T TIGR03269 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEE 93 (520)
T ss_pred EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccc
Confidence 45669999999999999999999999999999988631 0000
Q ss_pred -----------------ccccccc-cc---cchH---------------------HHHHHHhcCCchhhhhcccchHHHH
Q 002306 686 -----------------GSFVPCD-RA---SISV---------------------RDCIFARVGAGDCQLRGVSTFMQEM 723 (938)
Q Consensus 686 -----------------g~~vp~~-~~---~~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~ 723 (938)
-.|+|+. .. .... ++.++..+|..+......+++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 173 (520)
T TIGR03269 94 VDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGE 173 (520)
T ss_pred hhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHH
Confidence 1233332 10 0111 2234556676666666778888888
Q ss_pred HHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 724 LETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 724 ~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++...++++ +.+|+++|||||++|+|+.....+ ..+++.+.++.|.++|++||+.+.. .++++
T Consensus 174 ~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 174 KQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLV-HNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred HHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 777666654 789999999999999999988888 6777777553589999999998765 57776
No 232
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.64 E-value=9.2e-16 Score=182.09 Aligned_cols=141 Identities=14% Similarity=0.094 Sum_probs=103.7
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhccccccccc------ccch
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDR------ASIS 697 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~------~~~~ 697 (938)
+.++++|++.+|++++|+||||||||||||+++++... ...-.|+|... ...+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 46789999999999999999999999999998764210 00113455431 0001
Q ss_pred H------------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002306 698 V------------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 698 ~------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~ 751 (938)
+ ++.++.++|.. +......+.+|+++++...+++ .+.+|+++||||||+|+|+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 1 22455666765 4566667788877777666555 47899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
....+ +.++..+.+ .|.++|++||+.+.. ++|++
T Consensus 438 ~~~~l-~~~l~~l~~-~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 438 ARNDI-YQLIRSIAA-QNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred HHHHH-HHHHHHHHh-CCCEEEEECCCHHHHHHhCCE
Confidence 88888 777787876 589999999998765 57776
No 233
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.64 E-value=1.3e-15 Score=163.99 Aligned_cols=139 Identities=19% Similarity=0.126 Sum_probs=92.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-hhhhcc----------------------cccccccccch---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LMAQVG----------------------SFVPCDRASIS--- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~laq~g----------------------~~vp~~~~~~~--- 697 (938)
.+.++++|.+.+|++++|+||||||||||+|+++++. +....| .|+|......+
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 94 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS 94 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence 4667899999999999999999999999999998863 111111 12222211000
Q ss_pred ----------------------------HHHHHHHhcCCch-hhhhcc-cchHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002306 698 ----------------------------VRDCIFARVGAGD-CQLRGV-STFMQEMLETASILK-GATDRSLIIIDELGR 746 (938)
Q Consensus 698 ----------------------------~~d~i~~~~~~~d-~~~~~~-s~f~~e~~~~~~il~-~a~~~slvllDEp~~ 746 (938)
.++.++..++..+ ...... +.+|+++++...+.+ .+.+|+++|||||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~ 174 (248)
T PRK09580 95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDS 174 (248)
T ss_pred HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 0011222222211 111122 257766666555544 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHH
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTAL 784 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~ 784 (938)
|+|+.....+ ..++..+.+ .++++|++||++++...
T Consensus 175 ~LD~~~~~~l-~~~l~~l~~-~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 175 GLDIDALKIV-ADGVNSLRD-GKRSFIIVTHYQRILDY 210 (248)
T ss_pred cCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHh
Confidence 9999888887 667777765 58999999999887653
No 234
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1e-15 Score=166.47 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=104.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------------hhccccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------------AQVGSFVPCDRAS 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------------aq~g~~vp~~~~~ 695 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|....-
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 4678899999999999999999999999999999876421 0111344433211
Q ss_pred --chHHHH----------------------HHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002306 696 --ISVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (938)
Q Consensus 696 --~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~ 746 (938)
..+.+. ++..+++. +.+......+|+++++...+++ .+.+|+++|||||++
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 192 (267)
T PRK14237 113 FAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPAS 192 (267)
T ss_pred ccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 112221 22333332 2234455677777666555554 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
|+|+.....+ ..++..+.+ +.++|++||+.+.. .+|++ ...+.++++.
T Consensus 193 ~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~~~~~d~---------i~~l~~G~i~ 241 (267)
T PRK14237 193 ALDPISTMQL-EETMFELKK--NYTIIIVTHNMQQAARASDY---------TAFFYLGDLI 241 (267)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHHhcCE---------EEEEECCEEE
Confidence 9999888777 666677653 68999999998764 67877 5555555543
No 235
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=166.36 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=97.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-h---hhc-----------------------cccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-M---AQV-----------------------GSFVPCDRAS 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-l---aq~-----------------------g~~vp~~~~~ 695 (938)
..+.++++|++.+|++++|+||||||||||||+++++.. . ... -.|+|+...-
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 457789999999999999999999999999999987531 0 011 1233333210
Q ss_pred --chHHHH----------------------HHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002306 696 --ISVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (938)
Q Consensus 696 --~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~ 746 (938)
..+.+. .+..++.. +......+.+|+++++...+++ .+.+|+++|||||++
T Consensus 114 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 193 (268)
T PRK14248 114 FPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193 (268)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCc
Confidence 112221 12223321 2233455667777766655554 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
|+|+.....+ ..++..+.+ +.++|++||+.+. ..++++
T Consensus 194 ~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 194 ALDPISNAKI-EELITELKE--EYSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred ccCHHHHHHH-HHHHHHHhc--CCEEEEEEeCHHHHHHhCCE
Confidence 9999988888 777777754 5899999999875 457776
No 236
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.64 E-value=6e-16 Score=160.29 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=97.1
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------------hcccccccccc---cchH-------
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------QVGSFVPCDRA---SISV------- 698 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------------q~g~~vp~~~~---~~~~------- 698 (938)
+.+ ++|++.+|++++|+||||||||||+|+++++.... +.-.|+|.... ..++
T Consensus 16 l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~ 94 (195)
T PRK13541 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFW 94 (195)
T ss_pred EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHH
Confidence 444 88888999999999999999999999998652110 00123332210 1111
Q ss_pred ---------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q 002306 699 ---------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEI 768 (938)
Q Consensus 699 ---------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~ 768 (938)
...++..++..+......+.+|+++++...+.+ .+.+|+++|+|||++|+|+.....+ +.+++...+ .
T Consensus 95 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~~-~ 172 (195)
T PRK13541 95 SEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL-NNLIVMKAN-S 172 (195)
T ss_pred HHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh-C
Confidence 223445566666666667778877666555544 4789999999999999999887777 666665554 5
Q ss_pred CCeEEEEeCChHHHHHhh
Q 002306 769 RAPTLFATHFHELTALAH 786 (938)
Q Consensus 769 ~~~~l~~TH~~el~~~~~ 786 (938)
+.++|++||+.+....++
T Consensus 173 ~~tiii~sh~~~~i~~~~ 190 (195)
T PRK13541 173 GGIVLLSSHLESSIKSAQ 190 (195)
T ss_pred CCEEEEEeCCccccchhh
Confidence 899999999987665554
No 237
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9e-16 Score=164.99 Aligned_cols=141 Identities=16% Similarity=0.058 Sum_probs=97.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--hhh---------------------ccccccccccc--chH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--MAQ---------------------VGSFVPCDRAS--ISV 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--laq---------------------~g~~vp~~~~~--~~~ 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.- ... .-.|+|+...- .++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv 95 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSI 95 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccH
Confidence 46679999999999999999999999999999987531 000 11234433210 011
Q ss_pred -----------------------HHHHHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002306 699 -----------------------RDCIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (938)
Q Consensus 699 -----------------------~d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~ 750 (938)
+..++..++.. +........+|+++++...+.+ .+.+|+++|||||++|+|+
T Consensus 96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~ 175 (246)
T PRK14269 96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP 175 (246)
T ss_pred HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 12334555553 2234445667766666555444 5889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.....+ ..++..+.+ +.++|++||+.+.. .++++
T Consensus 176 ~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~~~~~d~ 210 (246)
T PRK14269 176 ISSGVI-EELLKELSH--NLSMIMVTHNMQQGKRVADY 210 (246)
T ss_pred HHHHHH-HHHHHHHhC--CCEEEEEecCHHHHHhhCcE
Confidence 888777 666666653 78999999998754 57776
No 238
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=166.02 Aligned_cols=141 Identities=16% Similarity=0.109 Sum_probs=97.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hhcc-----------------------ccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq~g-----------------------~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ...| .|+|+....
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 467799999999999999999999999999999876431 0111 233333110
Q ss_pred -chHHH-----------------------HHHHhcCCch----hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002306 696 -ISVRD-----------------------CIFARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (938)
Q Consensus 696 -~~~~d-----------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~ 746 (938)
.++.+ .++..+|+.+ .+.....++|+++++...+.+ .+.+|+++|||||++
T Consensus 113 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 192 (267)
T PRK14235 113 PKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCS 192 (267)
T ss_pred CCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 01111 2334445432 233445677766666555444 578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+|+.....+ ..+++.+.+ +.++|++||+.+.. .++++
T Consensus 193 ~LD~~~~~~l-~~~L~~l~~--~~tiiivtH~~~~~~~~~d~ 231 (267)
T PRK14235 193 ALDPIATAKV-EELIDELRQ--NYTIVIVTHSMQQAARVSQR 231 (267)
T ss_pred CCCHHHHHHH-HHHHHHHhc--CCeEEEEEcCHHHHHhhCCE
Confidence 9999888877 667777754 68999999998765 56666
No 239
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.63 E-value=7.6e-16 Score=151.28 Aligned_cols=119 Identities=14% Similarity=0.044 Sum_probs=81.2
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc-cccccccccchHHHHHHHhcCCchhhhhcccchHHHH
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG-SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g-~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 723 (938)
+.++++|++.+|++++|+||||||||||++++++..-.. -| .++... ..++++ ..+|.++
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~-~~i~~~-----------------~~lS~G~ 75 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGST-VKIGYF-----------------EQLSGGE 75 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCe-EEEEEE-----------------ccCCHHH
Confidence 455888888999999999999999999999987753221 11 111100 011110 1155444
Q ss_pred HH-HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 724 LE-TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 724 ~~-~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++ ++.+...+.+|+++|+|||++|+|+.....+ ..+++.+ +.++|++||+.+.. .++++
T Consensus 76 ~~rv~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~----~~til~~th~~~~~~~~~d~ 136 (144)
T cd03221 76 KMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL-EEALKEY----PGTVILVSHDRYFLDQVATK 136 (144)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHc----CCEEEEEECCHHHHHHhCCE
Confidence 44 4444555889999999999999999877776 4555443 47899999998766 45665
No 240
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.63 E-value=8.9e-16 Score=171.32 Aligned_cols=153 Identities=14% Similarity=0.024 Sum_probs=108.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------------------------hcccccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------------QVGSFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------------------------q~g~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+|+||||||||+++++++.-.. ..-.|||++..
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 4677999999999999999999999999999997654211 01124444421
Q ss_pred ---cchH----------------------HHHHHHhcCCch---hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002306 695 ---SISV----------------------RDCIFARVGAGD---CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (938)
Q Consensus 695 ---~~~~----------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~ 745 (938)
.+.+ +..++..+|..+ .+......+|++|+|...|.+ .+.+|+|+|+|||+
T Consensus 110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPt 189 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189 (330)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0111 123445555543 223455678888777665555 48899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+|||+.....+ ..++..+.++.|.++||+|||++++ .++++ ...+..+++.
T Consensus 190 s~LD~~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~~Dr---------i~vm~~G~iv 241 (330)
T PRK09473 190 TALDVTVQAQI-MTLLNELKREFNTAIIMITHDLGVVAGICDK---------VLVMYAGRTM 241 (330)
T ss_pred ccCCHHHHHHH-HHHHHHHHHHcCCEEEEEECCHHHHHHhCCE---------EEEEECCEEE
Confidence 99999988888 6677777664589999999998876 47877 5555555553
No 241
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.1e-15 Score=159.31 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=92.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--hhcc--------------------cccccccc---cchH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--AQVG--------------------SFVPCDRA---SISV 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--aq~g--------------------~~vp~~~~---~~~~ 698 (938)
.+.++++|++.+|++++|+||||||||||+++++++... ..-| .|+|.... ..++
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 100 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTV 100 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcH
Confidence 456689999999999999999999999999999886431 1111 12232211 1233
Q ss_pred HHHHHHhcCCchhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEE-e
Q 002306 699 RDCIFARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA-T 776 (938)
Q Consensus 699 ~d~i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~-T 776 (938)
.+.+.-.... ........+++++++. +.+...+.+|+++|||||++|+|+.....+ +.+++.+.++.+.+++++ +
T Consensus 101 ~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 101 RETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI-LKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred HHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH-HHHHHHHHHhCCCEEEEEEc
Confidence 3333211001 0233445666555554 455555889999999999999999888887 777777765336666665 5
Q ss_pred CCh-HHHHHhhh
Q 002306 777 HFH-ELTALAHE 787 (938)
Q Consensus 777 H~~-el~~~~~~ 787 (938)
|+. ++.+++++
T Consensus 178 h~~~~~~~~~d~ 189 (202)
T cd03233 178 QASDEIYDLFDK 189 (202)
T ss_pred CCHHHHHHhCCe
Confidence 554 55677777
No 242
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=9.4e-16 Score=163.86 Aligned_cols=141 Identities=14% Similarity=0.035 Sum_probs=93.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------------------hccccccccccc--chHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS--ISVRDC 701 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------------q~g~~vp~~~~~--~~~~d~ 701 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... +.-.|+|....- ..+.+.
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 94 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYN 94 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHH
Confidence 4667899999999999999999999999999998653211 111233333210 111111
Q ss_pred ---------------HHHhcCCchh-----------hhhcccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhHH
Q 002306 702 ---------------IFARVGAGDC-----------QLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 702 ---------------i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~-il~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.....+..+. .......+|+++++... +...+.+|+++|||||++|+|+....
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~ 174 (236)
T cd03253 95 IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174 (236)
T ss_pred HhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1112222221 11223456666655544 44458899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ..++..+.+ |.++|++||+.+....+++
T Consensus 175 ~l-~~~l~~~~~--~~tiii~sh~~~~~~~~d~ 204 (236)
T cd03253 175 EI-QAALRDVSK--GRTTIVIAHRLSTIVNADK 204 (236)
T ss_pred HH-HHHHHHhcC--CCEEEEEcCCHHHHHhCCE
Confidence 77 666666653 7899999999887766665
No 243
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.4e-16 Score=150.27 Aligned_cols=137 Identities=18% Similarity=0.070 Sum_probs=97.0
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc-----c---ccc--------------cccccchH
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG-----S---FVP--------------CDRASISV 698 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g-----~---~vp--------------~~~~~~~~ 698 (938)
+...+..+++|...+|+++.|+||||+|||||||+++++.-....- . -+| .-+..++.
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 4457778999999999999999999999999999998764221100 0 001 11111222
Q ss_pred H------------------HHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 699 R------------------DCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 699 ~------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
+ ...+..+|..+-.+.+...+|.++++...+.+. +++++|+|||||++++|......+..-
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l 172 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTAL 172 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHH
Confidence 2 234456677777777788888888888777776 789999999999999999655555444
Q ss_pred HHHHHHhcCCCeEEEEeCCh
Q 002306 760 ICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~ 779 (938)
+..|.. .|-.||++||..
T Consensus 173 ~~~H~~--~GGiVllttHq~ 190 (209)
T COG4133 173 MAAHAA--QGGIVLLTTHQP 190 (209)
T ss_pred HHHHhc--CCCEEEEecCCc
Confidence 444544 478899999974
No 244
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=163.66 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=95.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------------hhcccccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------------AQVGSFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------------aq~g~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-. .+...|+|....
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 466799999999999999999999999999999865320 011123333221
Q ss_pred cchHHHH----------------------HHHhcCCch----hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 695 SISVRDC----------------------IFARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 695 ~~~~~d~----------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
..++.+. ++..+|..+ ........+|+++++...+++ .+.+|+++|||||++|
T Consensus 97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~ 176 (250)
T PRK14262 97 PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176 (250)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 0111221 122233321 123344567766666555444 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+|+.....+ +.++..+.+ +.++|++||+.+. ..++++
T Consensus 177 LD~~~~~~l-~~~l~~~~~--~~tili~sH~~~~~~~~~d~ 214 (250)
T PRK14262 177 LDPIATQRI-EKLLEELSE--NYTIVIVTHNIGQAIRIADY 214 (250)
T ss_pred cCHHHHHHH-HHHHHHHhc--CcEEEEEeCCHHHHHHhCCE
Confidence 999988888 677776654 6899999999874 567776
No 245
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=164.50 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=102.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-h---hcc-----------------------ccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-A---QVG-----------------------SFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-a---q~g-----------------------~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++... . ..| .|+|.....
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 466799999999999999999999999999999875421 0 011 233332110
Q ss_pred -chHHH----------------------HHHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 696 -ISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
..+.+ .++..++.. +.+......+|+++++...+.+ .+.+|+++|||||++|
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 185 (259)
T PRK14274 106 PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSA 185 (259)
T ss_pred ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 01111 123334432 2234445667766666555554 5789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+|+.....+ +.++..+.+ +.++|++||+.+.. +++++ ...+.++++.
T Consensus 186 LD~~~~~~l-~~~l~~~~~--~~tiiivtH~~~~~~~~~d~---------i~~l~~G~i~ 233 (259)
T PRK14274 186 LDPVSTRKI-EELILKLKE--KYTIVIVTHNMQQAARVSDQ---------TAFFYMGELV 233 (259)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEEcCHHHHHHhCCE---------EEEEECCEEE
Confidence 999888887 677777754 68999999998764 57776 5555555553
No 246
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2e-15 Score=162.91 Aligned_cols=141 Identities=17% Similarity=0.114 Sum_probs=96.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hhcc-----------------------ccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq~g-----------------------~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... ...| .|+|.+..-
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 466789999999999999999999999999999876420 0111 123322110
Q ss_pred -chHHH----------------------HHHHhcCCc----hhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002306 696 -ISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~g 747 (938)
.++.+ .++..++.. +.+......+|+++++...++ +.+.+|+++|||||++|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~ 177 (251)
T PRK14251 98 PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA 177 (251)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcc
Confidence 11111 223333442 223444556776666654444 45789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..+++.+.+ +.++|++||+.+.. .++++
T Consensus 178 LD~~~~~~l-~~~l~~~~~--~~tiiiisH~~~~~~~~~d~ 215 (251)
T PRK14251 178 LDPISSSEI-EETLMELKH--QYTFIMVTHNLQQAGRISDQ 215 (251)
T ss_pred CCHHHHHHH-HHHHHHHHc--CCeEEEEECCHHHHHhhcCE
Confidence 999888877 666766654 68999999998764 56776
No 247
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.63 E-value=1.3e-15 Score=164.56 Aligned_cols=142 Identities=21% Similarity=0.177 Sum_probs=97.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-hhhhcc----------------------ccccccccc---ch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LMAQVG----------------------SFVPCDRAS---IS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~laq~g----------------------~~vp~~~~~---~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++. .-..-| .++|+.... ..
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 100 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS 100 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence 5677999999999999999999999999999998752 111111 122222100 00
Q ss_pred ----------------------------HHHHHHHhcCCch-hhhhccc-chHHHHHHHHHHH-HhCCCCcEEEEeCCCC
Q 002306 698 ----------------------------VRDCIFARVGAGD-CQLRGVS-TFMQEMLETASIL-KGATDRSLIIIDELGR 746 (938)
Q Consensus 698 ----------------------------~~d~i~~~~~~~d-~~~~~~s-~f~~e~~~~~~il-~~a~~~slvllDEp~~ 746 (938)
.+..++..+|..+ ....... .+|+++++...++ ..+.+|+++|||||++
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 180 (252)
T CHL00131 101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDS 180 (252)
T ss_pred HHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 0123345555542 2333333 4776666655544 4578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-H-hhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-L-AHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~-~~~ 787 (938)
|+|+.....+ +.++..+.+ .|.++|++||+.++.. + +++
T Consensus 181 ~LD~~~~~~l-~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~ 221 (252)
T CHL00131 181 GLDIDALKII-AEGINKLMT-SENSIILITHYQRLLDYIKPDY 221 (252)
T ss_pred cCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCHHHHHhhhCCE
Confidence 9999988888 677777765 5899999999988775 3 555
No 248
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.2e-15 Score=181.18 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=105.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhccccccccc------cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDR------AS 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~------~~ 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+.. ..
T Consensus 276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence 477899999999999999999999999999999875320 00012444331 00
Q ss_pred chH--------------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002306 696 ISV--------------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRG 747 (938)
Q Consensus 696 ~~~--------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~g 747 (938)
+++ ++.++.+++.. +.......++|+++++...+++. +.+|.++||||||+|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~ 435 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 111 23455666664 34566667888887777666654 789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ +.++..+.+ .|.++|++||+.+.. ++|++
T Consensus 436 LD~~~~~~l-~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 436 IDVGAKYEI-YKLINQLVQ-QGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred cCHhHHHHH-HHHHHHHHH-CCCEEEEECCCHHHHHHhCCE
Confidence 999988888 788888876 589999999998665 57776
No 249
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.63 E-value=1.6e-15 Score=179.87 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=103.2
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhccccccccc------ccch
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDR------ASIS 697 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~------~~~~ 697 (938)
+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+.. ..+.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 57799999999999999999999999999998754210 01113445432 0011
Q ss_pred H---------------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002306 698 V---------------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGT 748 (938)
Q Consensus 698 ~---------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gt 748 (938)
+ ++.++.++|.. +.......++|+++++...+++. +.+|+++||||||+|+
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 1 23455666663 44556667888877776665554 7899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+.....+ +.+++.+.+ .|.++|++||+.+.. .+|++
T Consensus 427 D~~~~~~l-~~~l~~~~~-~g~tviivtHd~~~~~~~~d~ 464 (501)
T PRK10762 427 DVGAKKEI-YQLINQFKA-EGLSIILVSSEMPEVLGMSDR 464 (501)
T ss_pred CHhHHHHH-HHHHHHHHH-CCCEEEEEcCCHHHHHhhCCE
Confidence 99988888 777777776 589999999997765 57776
No 250
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.63 E-value=1.7e-15 Score=164.62 Aligned_cols=142 Identities=9% Similarity=0.018 Sum_probs=99.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-------------------hhhcccccccccccc--hH---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------------------MAQVGSFVPCDRASI--SV--- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-------------------laq~g~~vp~~~~~~--~~--- 698 (938)
..+.++++|++.+|++++|+||||||||||||+++++.. +.+..+|+|.+..-+ ++
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 357789999999999999999999999999999986531 011123455443211 11
Q ss_pred -----------HHHHHHhcCCchhhhhccc-----------chHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q 002306 699 -----------RDCIFARVGAGDCQLRGVS-----------TFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 699 -----------~d~i~~~~~~~d~~~~~~s-----------~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+...+..+|+.+.+..... .+|+++++...++++ +.+|+++|||||++|+|+.....
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~ 176 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence 1123445565544443222 377777776555554 78999999999999999998877
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+ ..++..+. .++++|++||+++....+++
T Consensus 177 l-~~~l~~~~--~~~tii~isH~~~~i~~~dr 205 (275)
T cd03289 177 I-RKTLKQAF--ADCTVILSEHRIEAMLECQR 205 (275)
T ss_pred H-HHHHHHhc--CCCEEEEEECCHHHHHhCCE
Confidence 7 55555554 37999999999987766665
No 251
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=163.43 Aligned_cols=141 Identities=17% Similarity=0.150 Sum_probs=97.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--h-----h--------------------hcccccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M-----A--------------------QVGSFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--l-----a--------------------q~g~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.- . . ..-.|+|....
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 56779999999999999999999999999999987631 0 0 00123443321
Q ss_pred -cchHH----------------------HHHHHhcCCch----hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002306 695 -SISVR----------------------DCIFARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (938)
Q Consensus 695 -~~~~~----------------------d~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~ 746 (938)
..++. +.++..++... ........+|+++++...+.+ .+.+|+++|||||++
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 177 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPAS 177 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 01111 12233444321 223345567766666555544 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+|+.....+ ..+++.+.+ +.++|++||+.+.. +++++
T Consensus 178 gLD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d~ 216 (252)
T PRK14256 178 ALDPISTLKI-EELIEELKE--KYTIIIVTHNMQQAARVSDY 216 (252)
T ss_pred cCCHHHHHHH-HHHHHHHHh--CCcEEEEECCHHHHHhhCCE
Confidence 9999888887 667777765 57999999998765 67777
No 252
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=163.99 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=97.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hcc-----------------------cccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~g-----------------------~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... .-| .|+|....
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 4667999999999999999999999999999998764210 111 23332211
Q ss_pred -cchHHH----------------------HHHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 002306 695 -SISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGR 746 (938)
Q Consensus 695 -~~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~ 746 (938)
..++.+ .++..+|.. +.......++|+++++...+.+ .+.+|+++|||||++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCS 177 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 112222 223334432 2334445677776666555544 478999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+|+.....+ ..++..+.+ ++++|++||+.+.. +++++
T Consensus 178 ~LD~~~~~~l-~~~l~~~~~--~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 178 ALDPISTLAI-EDLINELKQ--DYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHHhCCE
Confidence 9999988888 777777754 58999999998764 57776
No 253
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.6e-15 Score=163.75 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=96.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hcc-----------------------cccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~g-----------------------~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-.. ..| .|+|+...
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 4677999999999999999999999999999998764210 011 23333221
Q ss_pred -cchHHH-----------------------HHHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002306 695 -SISVRD-----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (938)
Q Consensus 695 -~~~~~d-----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~ 745 (938)
..++.+ .++..+|.. +........+|+++++...+++ .+.+|+++|||||+
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 177 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 112222 222333331 1233344566766666555544 57899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+|+.....+ ..+++.+.+ +.++|++||+.+.. .++++
T Consensus 178 ~~LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d~ 217 (253)
T PRK14267 178 ANIDPVGTAKI-EELLFELKK--EYTIVLVTHSPAQAARVSDY 217 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHhh--CCEEEEEECCHHHHHhhCCE
Confidence 99999888877 667777754 58999999998764 57776
No 254
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.9e-15 Score=163.03 Aligned_cols=141 Identities=17% Similarity=0.082 Sum_probs=97.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--h-----h--------------------hcccccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M-----A--------------------QVGSFVPCDRASI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--l-----a--------------------q~g~~vp~~~~~~ 696 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.. . . +.-.|+|....-+
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 98 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccc
Confidence 46679999999999999999999999999999987632 0 0 0112444332110
Q ss_pred --hHHH-----------------------HHHHhcCCch----hhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCC
Q 002306 697 --SVRD-----------------------CIFARVGAGD----CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGR 746 (938)
Q Consensus 697 --~~~d-----------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~ 746 (938)
.+.+ .++..+|+.+ .+......+|+++++...+. ..+.+|+++|||||++
T Consensus 99 ~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 178 (251)
T PRK14244 99 PKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCS 178 (251)
T ss_pred cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1111 2334445432 22334456776666655444 4578999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+|+.....+ ..++..+.+ +.++|++||+.+.. .++++
T Consensus 179 ~LD~~~~~~l-~~~l~~~~~--~~tiiiisH~~~~~~~~~d~ 217 (251)
T PRK14244 179 ALDPVATNVI-ENLIQELKK--NFTIIVVTHSMKQAKKVSDR 217 (251)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHhhcCE
Confidence 9999888777 667777653 78999999998765 57776
No 255
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.62 E-value=1.6e-15 Score=160.55 Aligned_cols=134 Identities=24% Similarity=0.178 Sum_probs=93.7
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------------hcccccccccc-----cchH-------------
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------QVGSFVPCDRA-----SISV------------- 698 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------------q~g~~vp~~~~-----~~~~------------- 698 (938)
++.+|++++|+||||||||||+|+++++.... +.-.|+|.... ...+
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 45789999999999999999999998653110 11134443211 0111
Q ss_pred ------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 002306 699 ------------RDCIFARVGAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765 (938)
Q Consensus 699 ------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~ 765 (938)
+..++..+|..+........+|+++++...+. ..+.+|+++|+|||++|+|+.....+ ..++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l-~~~l~~~~ 160 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL-TELFIELA 160 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHH
Confidence 22344556665555555667777776665555 45889999999999999999988888 66667776
Q ss_pred hcCCCeEEEEeCChHHH-HHhhh
Q 002306 766 EEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 766 ~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ .|.++|++||+.+.. .++++
T Consensus 161 ~-~~~tvii~sH~~~~~~~~~d~ 182 (223)
T TIGR03771 161 G-AGTAILMTTHDLAQAMATCDR 182 (223)
T ss_pred H-cCCEEEEEeCCHHHHHHhCCE
Confidence 5 589999999998754 56665
No 256
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2e-15 Score=163.00 Aligned_cols=141 Identities=15% Similarity=0.069 Sum_probs=95.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--h-----h--------------------hccccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M-----A--------------------QVGSFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--l-----a--------------------q~g~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+|||||||||||++++++.. . . +...|+|+...-
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 56779999999999999999999999999999976521 1 0 011234433211
Q ss_pred -chHHHHH----------------------HHhcCCc----hhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002306 696 -ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~g 747 (938)
.++.+.+ +.+++.. +........+|+++++...++ ..+.+|+++|||||++|
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 178 (252)
T PRK14239 99 PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178 (252)
T ss_pred cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 1222222 2222221 122334456776666655544 45789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+|+.....+ ..++..+.+ +.++|++||+.+. ..++++
T Consensus 179 LD~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d~ 216 (252)
T PRK14239 179 LDPISAGKI-EETLLGLKD--DYTMLLVTRSMQQASRISDR 216 (252)
T ss_pred cCHHHHHHH-HHHHHHHhh--CCeEEEEECCHHHHHHhCCE
Confidence 999988888 667777754 5899999999865 467777
No 257
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.3e-15 Score=162.31 Aligned_cols=141 Identities=14% Similarity=0.146 Sum_probs=95.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------h--------------------hccccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A--------------------QVGSFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------a--------------------q~g~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++... . +...|+|....-
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 466799999999999999999999999999999875311 0 011244433211
Q ss_pred -chHHHHH----------------------HHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 696 -ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
.++.+.+ +..++.. +.......++|+++++...+.+ .+.+|+++|||||++|
T Consensus 97 ~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (250)
T PRK14240 97 PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176 (250)
T ss_pred cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 1222222 1222221 1223344567766666555544 5789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+|+.....+ ..++..+.+ +.++|++||+.+. .+++++
T Consensus 177 LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14240 177 LDPISTLKI-EELIQELKK--DYTIVIVTHNMQQASRISDK 214 (250)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEEeCHHHHHhhCCE
Confidence 999988888 666666653 6899999999875 466776
No 258
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.3e-15 Score=181.06 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=104.8
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhccccccccc------ccch
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDR------ASIS 697 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~------~~~~ 697 (938)
+.++++|++.+|++++|+||||||||||||+++++.-. ...-.|+|+.. ..++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 67899999999999999999999999999999764210 00113455431 0001
Q ss_pred H------------------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002306 698 V------------------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELG 745 (938)
Q Consensus 698 ~------------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~ 745 (938)
+ ++.++.++|.. +.......++|+++++...+++. +.+|.++||||||
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 1 23456667775 55666778888887776666554 7899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+|+.....+ ..+++.+.+ .|.++|++||+.+.. .+|++
T Consensus 438 ~~LD~~~~~~l-~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 438 RGIDVGAKAEI-YKVMRQLAD-DGKVILMVSSELPEIITVCDR 478 (510)
T ss_pred CCcCHHHHHHH-HHHHHHHHH-CCCEEEEEcCCHHHHHhhCCE
Confidence 99999988888 777777776 589999999998765 57776
No 259
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.4e-15 Score=162.25 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=101.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------h--------------------hccccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A--------------------QVGSFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------a--------------------q~g~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|+...-
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 466799999999999999999999999999999875321 0 011233333210
Q ss_pred -chHHH----------------------HHHHhcCCc----hhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002306 696 -ISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~g 747 (938)
..+.+ .++..+|.. +........+|+++++...+. ..+.+|+++|||||++|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 177 (251)
T PRK14270 98 PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177 (251)
T ss_pred CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11111 123333331 223344566776666655444 45789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+|+.....+ +.++..+.+ +.++|++||+.+.. .++++ ...+.++++.
T Consensus 178 LD~~~~~~l-~~~L~~~~~--~~tiiivsH~~~~~~~~~d~---------v~~l~~G~i~ 225 (251)
T PRK14270 178 LDPISTLKI-EDLMVELKK--EYTIVIVTHNMQQASRVSDY---------TAFFLMGDLI 225 (251)
T ss_pred CCHHHHHHH-HHHHHHHHh--CCeEEEEEcCHHHHHHhcCE---------EEEEECCeEE
Confidence 999888888 667777765 57899999998764 57777 5555555543
No 260
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.62 E-value=1.6e-15 Score=181.05 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=110.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh------h----------------hhcccccccccc-----c
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------M----------------AQVGSFVPCDRA-----S 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~------l----------------aq~g~~vp~~~~-----~ 695 (938)
..+.++++|++.+|++++|+||||||||||+|+++++.. + .+.-.|+|+... .
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 356789999999999999999999999999999976531 0 011134444320 0
Q ss_pred chH-----------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 002306 696 ISV-----------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTST 750 (938)
Q Consensus 696 ~~~-----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~ 750 (938)
..+ +..++.++|.. +......+++|+++++...+++. +.+|+++||||||+|+|+
T Consensus 379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 111 12345566765 34566678888888777666654 789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.....+ +.++..++++.|.++|++||+.+.. .+|++ ...+.++++.
T Consensus 459 ~~~~~l-~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~---------i~~l~~G~i~ 505 (529)
T PRK15134 459 TVQAQI-LALLKSLQQKHQLAYLFISHDLHVVRALCHQ---------VIVLRQGEVV 505 (529)
T ss_pred HHHHHH-HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCe---------EEEEECCEEE
Confidence 988888 6777777653589999999998765 57777 5555565553
No 261
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.62 E-value=1.7e-15 Score=159.01 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=91.1
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccc-------cccc--c---ccchHHHHH----------
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF-------VPCD--R---ASISVRDCI---------- 702 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~-------vp~~--~---~~~~~~d~i---------- 702 (938)
+.++++|++++|++++|+||||||||||+|+++++... .-|.. ++.. . ..+++.+.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 46799999999999999999999999999999876421 11211 1100 0 112222222
Q ss_pred --------HHhcCCchhhhhcccchHHHHHHHH-HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEE
Q 002306 703 --------FARVGAGDCQLRGVSTFMQEMLETA-SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTL 773 (938)
Q Consensus 703 --------~~~~~~~d~~~~~~s~f~~e~~~~~-~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l 773 (938)
....+..+......+.++++|++.. .++..+.+|+++|+|||++++|+.....+...+.+.+. +.++|
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~---~~~ii 157 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ---QKGLI 157 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh---CCcEE
Confidence 1112222223334456676666654 44445789999999999999999988887444445443 35689
Q ss_pred EEeCChHHH-HHhhh
Q 002306 774 FATHFHELT-ALAHE 787 (938)
Q Consensus 774 ~~TH~~el~-~~~~~ 787 (938)
++||+++.. .++++
T Consensus 158 ~vsH~~~~~~~~~d~ 172 (213)
T PRK15177 158 VLTHNPRLIKEHCHA 172 (213)
T ss_pred EEECCHHHHHHhcCe
Confidence 999998765 57776
No 262
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.1e-15 Score=163.05 Aligned_cols=142 Identities=17% Similarity=0.130 Sum_probs=97.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------------------------hcccccccccc--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------------QVGSFVPCDRA-- 694 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------------------q~g~~vp~~~~-- 694 (938)
..+.++++|.+.+|++++|+|||||||||||+++++..... +...|+|....
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPF 102 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccC
Confidence 45677999999999999999999999999999998653210 01123333321
Q ss_pred -cchHHH----------------------HHHHhcCCc----hhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCC
Q 002306 695 -SISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGR 746 (938)
Q Consensus 695 -~~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~ 746 (938)
...+.+ .++..++.. +........+++++++...+. +.+.+|+++|||||++
T Consensus 103 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~ 182 (257)
T PRK14246 103 PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182 (257)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 111111 223334442 223344456776666655544 4588999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+|+.....+ ..++..+.+ ++++|++||+.+.. .++++
T Consensus 183 ~LD~~~~~~l-~~~l~~~~~--~~tiilvsh~~~~~~~~~d~ 221 (257)
T PRK14246 183 MIDIVNSQAI-EKLITELKN--EIAIVIVSHNPQQVARVADY 221 (257)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CcEEEEEECCHHHHHHhCCE
Confidence 9999888887 677777754 68999999998876 67776
No 263
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.62 E-value=9.3e-16 Score=181.51 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=102.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc---c-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---S- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~---~- 695 (938)
..+.++++|++.+|++++|+||||||||||||++++.... .++ .|+|.... .
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~~~ 351 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI-GYVSSSLHLDYRV 351 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc-eEECHHHHhhccc
Confidence 3577899999999999999999999999999999875321 011 22332110 0
Q ss_pred --------------------------chHHHHHHHhcCCch-hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 696 --------------------------ISVRDCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 696 --------------------------~~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
-..++.++..+|..+ ......+++|+++++...+++ .+.+|+++||||||+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 001234556677765 556667788887777665555 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH--Hhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA--LAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~--~~~~ 787 (938)
+|+.....+ ..++..++++.++++|++||+.+... ++++
T Consensus 432 LD~~~~~~l-~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~ 472 (490)
T PRK10938 432 LDPLNRQLV-RRFVDVLISEGETQLLFVSHHAEDAPACITHR 472 (490)
T ss_pred CCHHHHHHH-HHHHHHHHhcCCcEEEEEecchhhhhhhhhee
Confidence 999988888 77777777633457999999987764 3555
No 264
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.62 E-value=1.4e-15 Score=181.67 Aligned_cols=154 Identities=16% Similarity=0.059 Sum_probs=110.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------h----------------------hcccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A----------------------QVGSFVPCDRA 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------a----------------------q~g~~vp~~~~ 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|+...
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 467799999999999999999999999999999876431 0 01124444321
Q ss_pred --c---ch----------------------HHHHHHHhcCCch---hhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeC
Q 002306 695 --S---IS----------------------VRDCIFARVGAGD---CQLRGVSTFMQEMLETASILKG-ATDRSLIIIDE 743 (938)
Q Consensus 695 --~---~~----------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDE 743 (938)
- .. .++.++..+|+.+ ......+++|+++++...++++ +.+|+++||||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE 182 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 00 0123445566643 2355677888877776666554 78999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 744 p~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
||+|+|+.....+ ..++..+.++.|.++|++||+.+.+ .++++ ...+.++++..
T Consensus 183 Pt~~LD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr---------i~~l~~G~i~~ 237 (529)
T PRK15134 183 PTTALDVSVQAQI-LQLLRELQQELNMGLLFITHNLSIVRKLADR---------VAVMQNGRCVE 237 (529)
T ss_pred CCCccCHHHHHHH-HHHHHHHHHhcCCeEEEEcCcHHHHHHhcCE---------EEEEECCEEEE
Confidence 9999999988888 7777777653489999999998765 57887 55666666543
No 265
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.3e-15 Score=151.10 Aligned_cols=141 Identities=23% Similarity=0.223 Sum_probs=103.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH----------------------hhhhccccc----ccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI----------------------LMAQVGSFV----PCDRASI 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~----------------------~laq~g~~v----p~~~~~~ 696 (938)
.-|.++++|+++.|++++|+||||||||||..+|++.- -.|..|.|+ |++-.-+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 47889999999999999999999999999999987431 135566665 3222111
Q ss_pred h------------------------HHHHHHHhcCCch-hhhhcc-cchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002306 697 S------------------------VRDCIFARVGAGD-CQLRGV-STFMQEMLETASILKG-ATDRSLIIIDELGRGTS 749 (938)
Q Consensus 697 ~------------------------~~d~i~~~~~~~d-~~~~~~-s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd 749 (938)
. .++..+..++..+ .+.+.. -.||++-+....|++. +.+|+++|||||-||+|
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 1 1222344455444 222222 3577777777777776 67999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~ 785 (938)
. |+..+....++.+.+ .|..++++|||..+.++.
T Consensus 177 I-dalk~V~~~i~~lr~-~~~~~liITHy~rll~~i 210 (251)
T COG0396 177 I-DALKIVAEGINALRE-EGRGVLIITHYQRLLDYI 210 (251)
T ss_pred H-HHHHHHHHHHHHHhc-CCCeEEEEecHHHHHhhc
Confidence 8 566666788888887 699999999999987755
No 266
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2e-15 Score=178.61 Aligned_cols=152 Identities=18% Similarity=0.129 Sum_probs=108.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc---cchH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SISV- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~---~~~~- 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... ..++
T Consensus 12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (491)
T PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM 91 (491)
T ss_pred EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence 456689999999999999999999999999999765311 011124443321 0111
Q ss_pred -----------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 699 -----------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 699 -----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+..++.++|..+......+++|+++++...+++ .+.+|+++|||||++|+|+....
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~ 171 (491)
T PRK10982 92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171 (491)
T ss_pred HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 233455566655555666788877777666555 47899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.+ +.++..+.+ .|.++|++||+.+.. .+|++ ...+.++++.
T Consensus 172 ~l-~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~---------i~~l~~G~i~ 213 (491)
T PRK10982 172 HL-FTIIRKLKE-RGCGIVYISHKMEEIFQLCDE---------ITILRDGQWI 213 (491)
T ss_pred HH-HHHHHHHHh-CCCEEEEEecCHHHHHHhCCE---------EEEEECCEEE
Confidence 88 777777776 589999999998765 57777 4555555554
No 267
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.4e-15 Score=161.21 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=95.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--h-----h--------------------hccccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M-----A--------------------QVGSFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--l-----a--------------------q~g~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++.. . . +.-.|+|+...-
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence 46679999999999999999999999999999987531 1 0 011234433211
Q ss_pred -chHHHHH----------------------HHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 696 -ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
..+.+.+ +.+++.. +........+|+++++...+.+ .+.+|+++|||||++|
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 178 (252)
T PRK14255 99 PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA 178 (252)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 1122211 1222221 1223344567766666555544 5889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..+.+ +.++|++||+.+.. +++++
T Consensus 179 LD~~~~~~l-~~~l~~~~~--~~tii~vsH~~~~~~~~~d~ 216 (252)
T PRK14255 179 LDPISSTQI-ENMLLELRD--QYTIILVTHSMHQASRISDK 216 (252)
T ss_pred CCHHHHHHH-HHHHHHHHh--CCEEEEEECCHHHHHHhCCE
Confidence 999988888 666766665 47999999998765 57776
No 268
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.61 E-value=1.6e-15 Score=179.94 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=104.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-----------------------hcccccccccc------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-----------------------QVGSFVPCDRA------ 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-----------------------q~g~~vp~~~~------ 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... ++ .|+|+...
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI-AMVPEDRKRHGIVP 352 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCC-EEcCcchhhCCcCC
Confidence 4778999999999999999999999999999998653210 11 23333310
Q ss_pred c--------c------------------hHHHHHHHhcCCch-hhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002306 695 S--------I------------------SVRDCIFARVGAGD-CQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGR 746 (938)
Q Consensus 695 ~--------~------------------~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~ 746 (938)
. + ..+..++.+++..+ .......++|+++++...+++. +.+|.++||||||+
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 432 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 0 0 01234566677653 4566677888887777666654 78999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+|+.....+ +.++..+.+ .|.++|++||+.+.. ++|++
T Consensus 433 ~LD~~~~~~l-~~~l~~l~~-~g~tviivsHd~~~~~~~~d~ 472 (500)
T TIGR02633 433 GVDVGAKYEI-YKLINQLAQ-EGVAIIVVSSELAEVLGLSDR 472 (500)
T ss_pred CcCHhHHHHH-HHHHHHHHh-CCCEEEEECCCHHHHHHhCCE
Confidence 9999888887 778888876 589999999998755 57777
No 269
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.4e-15 Score=160.92 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=95.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hc----------------------cccccccccc-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QV----------------------GSFVPCDRAS- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~----------------------g~~vp~~~~~- 695 (938)
..+.++++|++.+|++++|+||||||||||+|+++++.-.. .- -.|+|....-
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 35677999999999999999999999999999998753210 01 1234433211
Q ss_pred -chHHHHH----------------------HHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 696 -ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
.++.+.+ +..++.. +.+......+|+++++...+++ .+.+|+++|||||++|
T Consensus 96 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 175 (249)
T PRK14253 96 PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSA 175 (249)
T ss_pred cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 1222221 1122221 1223344567766665555444 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+|+.....+ ..+++.+.+ +.++|++||+.+. ..++++
T Consensus 176 LD~~~~~~l-~~~l~~~~~--~~tii~~sh~~~~~~~~~d~ 213 (249)
T PRK14253 176 LDPIATHKI-EELMEELKK--NYTIVIVTHSMQQARRISDR 213 (249)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEecCHHHHHHhCCE
Confidence 999877777 677777764 5899999999876 456776
No 270
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.9e-15 Score=161.84 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=95.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-h---hcc-----------------------ccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-A---QVG-----------------------SFVPCDRAS 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-a---q~g-----------------------~~vp~~~~~ 695 (938)
..+.++++|++.+|++++|+||||||||||+|+++++.-. . ..| .|+|....-
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 3567799999999999999999999999999999865311 0 011 233333211
Q ss_pred c--hHHH----------------------HHHHhcCCc----hhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCC
Q 002306 696 I--SVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGR 746 (938)
Q Consensus 696 ~--~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~ 746 (938)
+ ++.+ .++.+++.. +.+......+|+++++. +.+...+.+|+++|||||++
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 178 (253)
T PRK14261 99 FPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCS 178 (253)
T ss_pred CcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 0 1111 122222321 12233445566655554 44445588999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+|+.....+ ..++..+.+ +.++|++||+.+.. +++++
T Consensus 179 gLD~~~~~~l-~~~l~~~~~--~~tvii~sh~~~~~~~~~d~ 217 (253)
T PRK14261 179 ALDPIATAKI-EDLIEDLKK--EYTVIIVTHNMQQAARVSDY 217 (253)
T ss_pred cCCHHHHHHH-HHHHHHHhh--CceEEEEEcCHHHHHhhCCE
Confidence 9999988888 667777764 58999999998765 57776
No 271
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.8e-15 Score=179.40 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=108.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcccccccccc---cchH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA---SISV 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~~---~~~~ 698 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .++ .|+|+... .+++
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i-~~v~q~~~~~~~~tv 96 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV-AIIYQELHLVPEMTV 96 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE-EEEEechhccCCCCH
Confidence 466799999999999999999999999999999765311 012 24443311 0111
Q ss_pred ------------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 699 ------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 699 ------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
+..++.++|..+......+++|+++++...+++ .+.+|+++||||||+|+|+...
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (501)
T PRK11288 97 AENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176 (501)
T ss_pred HHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHH
Confidence 223455566655555666788877777665555 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
..+ ..++..+.+ .|.++|++||+.+.. .++++ ...+.++++.
T Consensus 177 ~~l-~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~---------i~~l~~G~i~ 219 (501)
T PRK11288 177 EQL-FRVIRELRA-EGRVILYVSHRMEEIFALCDA---------ITVFKDGRYV 219 (501)
T ss_pred HHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 888 777777766 589999999998765 57777 5555555543
No 272
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.61 E-value=1.8e-15 Score=179.50 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=102.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----h-------------------hcccccccccc---cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----A-------------------QVGSFVPCDRA---SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----a-------------------q~g~~vp~~~~---~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++... . +.-.|+|+... .+.
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELS 94 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCc
Confidence 467799999999999999999999999999999875421 0 00124443321 011
Q ss_pred H-------------------------HHHHHHhcCCchhh-hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002306 698 V-------------------------RDCIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (938)
Q Consensus 698 ~-------------------------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~ 750 (938)
+ +..++.++|..+.. ....+++|+++++...+++ .+.+|+++||||||+|+|+
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~ 174 (500)
T TIGR02633 95 VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTE 174 (500)
T ss_pred HHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 1 22344555654433 3446788888777666665 4789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.....+ ..+++.+.+ .|.++|++||+.+.. .+|++
T Consensus 175 ~~~~~l-~~~l~~l~~-~g~tviiitHd~~~~~~~~d~ 210 (500)
T TIGR02633 175 KETEIL-LDIIRDLKA-HGVACVYISHKLNEVKAVCDT 210 (500)
T ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEeCcHHHHHHhCCE
Confidence 988888 777777776 589999999997765 57777
No 273
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=4.9e-15 Score=147.51 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=107.9
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH--------------------hhhhccccc------------
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------LMAQVGSFV------------ 689 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--------------------~laq~g~~v------------ 689 (938)
++-+.++++|+..+|++.+|+||||||||||||.+.+-. -||+.-..+
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 356778999999999999999999999999999975311 112111111
Q ss_pred ---------cccccc-----chHHHHHHHhcCCchhhhhcccchHHHHHHH---HHHHHhCC----CCcEEEEeCCCCCC
Q 002306 690 ---------PCDRAS-----ISVRDCIFARVGAGDCQLRGVSTFMQEMLET---ASILKGAT----DRSLIIIDELGRGT 748 (938)
Q Consensus 690 ---------p~~~~~-----~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~---~~il~~a~----~~slvllDEp~~gt 748 (938)
|..... -.+..+.+.+.+...-..+..-++|++.++. +..++... .+..++|||||+.+
T Consensus 93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL 172 (259)
T COG4559 93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL 172 (259)
T ss_pred HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence 221111 1234456666666555555555666544443 44444433 34599999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-HhhhcccccccccccceeEEEEEEE
Q 002306 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
|......+ ..+.+.++. .|+.|+.+-||+.++. +||+ +--+..+++.+.
T Consensus 173 Di~HQ~~t-l~laR~la~-~g~~V~~VLHDLNLAA~YaDr---------ivll~~Grv~a~ 222 (259)
T COG4559 173 DIAHQHHT-LRLARQLAR-EGGAVLAVLHDLNLAAQYADR---------IVLLHQGRVIAS 222 (259)
T ss_pred chHHHHHH-HHHHHHHHh-cCCcEEEEEccchHHHHhhhe---------eeeeeCCeEeec
Confidence 99998888 778888887 6899999999999984 8887 666666766554
No 274
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.61 E-value=3.6e-15 Score=162.70 Aligned_cols=154 Identities=12% Similarity=0.013 Sum_probs=100.0
Q ss_pred cEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhc-------cccccccccc--
Q 002306 625 DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-------GSFVPCDRAS-- 695 (938)
Q Consensus 625 ~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~-------g~~vp~~~~~-- 695 (938)
.|.+++.... ...+.++++|++.+|++++|+||||||||||+|+++++.-.... -.|+|+...-
T Consensus 39 ~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~ 111 (282)
T cd03291 39 NLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111 (282)
T ss_pred eEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc
Confidence 4777766442 13577799999999999999999999999999999875321110 1244443210
Q ss_pred chHHHH--------------HHHhcCCchhhh-----------hcccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCC
Q 002306 696 ISVRDC--------------IFARVGAGDCQL-----------RGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTS 749 (938)
Q Consensus 696 ~~~~d~--------------i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~-il~~a~~~slvllDEp~~gtd 749 (938)
.++.+. .+...++.+.+. .+.+.+|+++++... +...+.+|+++|||||++|+|
T Consensus 112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD 191 (282)
T cd03291 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (282)
T ss_pred cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 112221 122223222111 112466666655544 444578999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.....+...+++.+.+ +.++|++||+.+....+++
T Consensus 192 ~~~~~~l~~~ll~~~~~--~~tIiiisH~~~~~~~~d~ 227 (282)
T cd03291 192 VFTEKEIFESCVCKLMA--NKTRILVTSKMEHLKKADK 227 (282)
T ss_pred HHHHHHHHHHHHHHhhC--CCEEEEEeCChHHHHhCCE
Confidence 98777774445565543 6899999999887666655
No 275
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.61 E-value=2.1e-15 Score=159.18 Aligned_cols=143 Identities=9% Similarity=0.005 Sum_probs=96.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------------hcccccccccc--cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------------QVGSFVPCDRA--SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------------q~g~~vp~~~~--~~~ 697 (938)
.+.++++|++.+|++++|+|||||||||||++++++.... +.-.|+|.... ...
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 94 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT 94 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence 4667899999999999999999999999999998653100 11123343321 111
Q ss_pred HHH--------------HHHHhcCCchhh-----------hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002306 698 VRD--------------CIFARVGAGDCQ-----------LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 698 ~~d--------------~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~ 751 (938)
+.+ .+...++..+.+ ......+++++++...+.+ .+.+|+++|||||++|+|+.
T Consensus 95 ~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 174 (218)
T cd03290 95 VEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174 (218)
T ss_pred HHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHH
Confidence 122 222333332211 1234567776666555554 47899999999999999999
Q ss_pred hHHHHHHH-HHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 752 DGFGLAWA-ICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 752 ~~~~i~~~-il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
....+... +++.+.+ .|.++|++||+.+....+++
T Consensus 175 ~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~~~d~ 210 (218)
T cd03290 175 LSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLPHADW 210 (218)
T ss_pred HHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHhhCCE
Confidence 88888443 7777765 58999999999887665554
No 276
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.1e-15 Score=164.75 Aligned_cols=166 Identities=15% Similarity=0.095 Sum_probs=107.7
Q ss_pred CCCCCccCCCCCccEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hh---
Q 002306 612 PYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQ--- 684 (938)
Q Consensus 612 ~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq--- 684 (938)
.|+-|.+.... .|.+.+...-+ +...+.++++|++.+|++++|+|||||||||||++++++... ..
T Consensus 34 ~~~~~~~~~~~--~l~i~nl~~~~-----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~ 106 (305)
T PRK14264 34 EWTDYEFDGDA--KLSVEDLDVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106 (305)
T ss_pred cccccccCCCc--eEEEEEEEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 46666665432 35555543221 123578899999999999999999999999999999876420 01
Q ss_pred --------------------ccccccccccc--chHHHH----------------------------------HHHhcCC
Q 002306 685 --------------------VGSFVPCDRAS--ISVRDC----------------------------------IFARVGA 708 (938)
Q Consensus 685 --------------------~g~~vp~~~~~--~~~~d~----------------------------------i~~~~~~ 708 (938)
...|+|+...- ..+.+. ++..++.
T Consensus 107 I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 186 (305)
T PRK14264 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL 186 (305)
T ss_pred EEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC
Confidence 11244433210 111221 2222232
Q ss_pred c----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-
Q 002306 709 G----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT- 782 (938)
Q Consensus 709 ~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~- 782 (938)
. +........+|+++++...+.+ .+.+|+++|||||++|+|+.....+ ..++..+.+ +.++|++||+.+..
T Consensus 187 ~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~i~ 263 (305)
T PRK14264 187 WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI-EDLIEELAE--EYTVVVVTHNMQQAA 263 (305)
T ss_pred chhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc--CCEEEEEEcCHHHHH
Confidence 1 1223344567766666555444 5789999999999999999888877 777777765 47899999998764
Q ss_pred HHhhh
Q 002306 783 ALAHE 787 (938)
Q Consensus 783 ~~~~~ 787 (938)
.++++
T Consensus 264 ~~~d~ 268 (305)
T PRK14264 264 RISDQ 268 (305)
T ss_pred HhcCE
Confidence 56665
No 277
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.61 E-value=2.1e-15 Score=196.65 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=118.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc---ch--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS---IS-- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~---~~-- 697 (938)
..+.++++|++.+|++++|+|||||||||++|++++... ..++ .|+|+..+- ++
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I-Gy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM-GYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE-EEEeccccCCCCCCHH
Confidence 357889999999999999999999999999999976531 1122 345544211 11
Q ss_pred -------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 698 -------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 698 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
.++.++.++|+.+...+...++|++++|...+++ .+.+|+++|||||++|+||.....+
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l- 2109 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML- 2109 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-
Confidence 1234556677766666777888888877655544 5789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEEE
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (938)
|.+++.+.+ .|+++|++||+++.+ .+|++ ...+.++++.+..
T Consensus 2110 ~~lL~~l~~-~g~TIILtTH~mee~e~lcDr---------V~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2110 WNTIVSIIR-EGRAVVLTSHSMEECEALCTR---------LAIMVKGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEEEC
Confidence 888888876 589999999998766 58888 6677788877653
No 278
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.1e-15 Score=160.39 Aligned_cols=141 Identities=14% Similarity=0.069 Sum_probs=94.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------------------------hccccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------------QVGSFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------------------------q~g~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-.. +.-.|+|....-
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 4567999999999999999999999999999998753221 011233333210
Q ss_pred -chHHHH----------------------HHHhcCCc----hhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002306 696 -ISVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~g 747 (938)
..+.+. ++..++.. +........+|+++++...+. ..+.+|+++|||||++|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 177 (251)
T PRK14249 98 PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177 (251)
T ss_pred cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 011111 12222321 122344456676665554444 45789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..+. .++++|++||+.+.. .++++
T Consensus 178 LD~~~~~~l-~~~l~~~~--~~~tilivsh~~~~~~~~~d~ 215 (251)
T PRK14249 178 LDPVSTMRI-EELMQELK--QNYTIAIVTHNMQQAARASDW 215 (251)
T ss_pred CCHHHHHHH-HHHHHHHh--cCCEEEEEeCCHHHHHhhCCE
Confidence 999988887 66777774 378999999998765 46666
No 279
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.60 E-value=3e-15 Score=177.59 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=104.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-------h-h-------------hcccccccccc------cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------M-A-------------QVGSFVPCDRA------SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-------l-a-------------q~g~~vp~~~~------~~ 696 (938)
.+.++++|++.+|++++|+||||||||||||++++..- + . +.-.|+|.... ..
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 36789999999999999999999999999999875421 0 0 00113333210 00
Q ss_pred h---------------------------HHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 002306 697 S---------------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRG 747 (938)
Q Consensus 697 ~---------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~g 747 (938)
+ .+..++.++|.. +.......++|+++++...+++. +.+|.|+||||||+|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 0 123455667763 45666778898888777666655 789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..+.+ .|.++|++|||.+.. .++++
T Consensus 427 LD~~~~~~l-~~~l~~l~~-~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 427 IDVGAKHEI-YNVIYELAA-QGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred CCHhHHHHH-HHHHHHHHh-CCCEEEEECCCHHHHHhhCCE
Confidence 999988888 777777876 589999999998765 57776
No 280
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=3.3e-15 Score=162.66 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=95.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hhc-----------------------ccccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQV-----------------------GSFVPCDRASI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq~-----------------------g~~vp~~~~~~ 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-. ... -.|+|+...-+
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 106 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF 106 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence 567899999999999999999999999999999875321 011 12444332110
Q ss_pred --hHHHH--------------------HHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002306 697 --SVRDC--------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (938)
Q Consensus 697 --~~~d~--------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd 749 (938)
++.+. ++..++.. +.+......+|+++++...+++ .+.+|+++|||||++|+|
T Consensus 107 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD 186 (269)
T PRK14259 107 PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186 (269)
T ss_pred hhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 11111 22233321 1233344567766666555444 578999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.....+ +.+++.+.+ +.++|++||+.+.. .++++
T Consensus 187 ~~~~~~l-~~~l~~~~~--~~tiiivtH~~~~~~~~~d~ 222 (269)
T PRK14259 187 PISTLKI-EETMHELKK--NFTIVIVTHNMQQAVRVSDM 222 (269)
T ss_pred HHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhcCE
Confidence 9888888 667777753 68999999998654 56665
No 281
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5e-15 Score=161.72 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=97.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------h-------------------hccccccccccc-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A-------------------QVGSFVPCDRAS- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------a-------------------q~g~~vp~~~~~- 695 (938)
..+.++++|++.+|++++|+|||||||||||++++++.-. . ....|+|....-
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 4577899999999999999999999999999999875321 0 011244433210
Q ss_pred -chHHH----------------------HHHHhcCCch----hhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002306 696 -ISVRD----------------------CIFARVGAGD----CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d----------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~g 747 (938)
..+.+ .++..++..+ .+......+|+++++...+. ..+.+|.++|||||++|
T Consensus 114 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~ 193 (276)
T PRK14271 114 PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193 (276)
T ss_pred CccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 11111 1233344332 22344556776666655444 45789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+|+.....+ ..++..+.+ ++++|++||+.+. .+++++
T Consensus 194 LD~~~~~~l-~~~L~~~~~--~~tiiivsH~~~~~~~~~dr 231 (276)
T PRK14271 194 LDPTTTEKI-EEFIRSLAD--RLTVIIVTHNLAQAARISDR 231 (276)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCCE
Confidence 999888887 667777764 4899999999875 457776
No 282
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.5e-15 Score=177.87 Aligned_cols=142 Identities=10% Similarity=0.040 Sum_probs=103.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc------cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA------SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~------~~ 696 (938)
.+.++++|.+..|++++|+||||||||||+|+++++.-. .+.-.|+|.... ..
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 467899999999999999999999999999999754210 011123443310 00
Q ss_pred h---------------------------HHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 697 S---------------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 697 ~---------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
. .+..++.+++.. +.......++|+++++...+++ .+.+|.++||||||+|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 0 012344555553 3456667788887777666555 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ +.++..+.+ .|.++|++||+.+.. .+|++
T Consensus 422 LD~~~~~~~-~~~l~~l~~-~~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 422 IDVGAKFEI-YQLIAELAK-KDKGIIIISSEMPELLGITDR 460 (491)
T ss_pred cChhHHHHH-HHHHHHHHH-CCCEEEEECCChHHHHhhCCE
Confidence 999988888 777888876 589999999997765 57777
No 283
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.3e-15 Score=162.15 Aligned_cols=142 Identities=17% Similarity=0.107 Sum_probs=96.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------h--------------------hccccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A--------------------QVGSFVPCDRAS 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------a--------------------q~g~~vp~~~~~ 695 (938)
..+.++++|++.+|++++|+|||||||||||++++++.-. + ..-.|+|....-
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 3577899999999999999999999999999999865311 0 011244443211
Q ss_pred c--hHHHHH--------------------HHhcCCc----hhhhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCC
Q 002306 696 I--SVRDCI--------------------FARVGAG----DCQLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGRGT 748 (938)
Q Consensus 696 ~--~~~d~i--------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~i-l~~a~~~slvllDEp~~gt 748 (938)
+ .+.+.+ +..++.. +......+.+|+++++...+ .+.+.+|+++|||||++|+
T Consensus 113 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~L 192 (274)
T PRK14265 113 FPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSAL 192 (274)
T ss_pred ccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 1 122221 2223321 22334456677666555444 4458899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+.....+ ..++..+.+ ++++|++||+.+.. .++++
T Consensus 193 D~~~~~~l-~~~L~~~~~--~~tiii~sH~~~~~~~~~d~ 229 (274)
T PRK14265 193 DPISTRQV-EELCLELKE--QYTIIMVTHNMQQASRVADW 229 (274)
T ss_pred CHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCCE
Confidence 99888888 666666654 68999999998655 57776
No 284
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.60 E-value=3.4e-15 Score=177.99 Aligned_cols=143 Identities=10% Similarity=0.068 Sum_probs=102.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-------h--h------------------hcccccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------M--A------------------QVGSFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-------l--a------------------q~g~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++.. + . +.-.|+|+...
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 46779999999999999999999999999999976521 1 0 00124444321
Q ss_pred -cchH--------------------HHHHHHhcCCch-----hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 695 -SISV--------------------RDCIFARVGAGD-----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 695 -~~~~--------------------~d~i~~~~~~~d-----~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
...+ +..++.++|..+ .......++|+++++...+++ .+.+|+++||||||+|
T Consensus 378 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~ 457 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457 (520)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0111 123455566643 345666788877777655554 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..++++.|.++|++||+.+.. .++++
T Consensus 458 LD~~~~~~l-~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 458 MDPITKVDV-THSILKAREEMEQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred CCHHHHHHH-HHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence 999988888 6777777653589999999998765 57776
No 285
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.60 E-value=3.5e-15 Score=156.10 Aligned_cols=137 Identities=12% Similarity=0.008 Sum_probs=93.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVRDC 701 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~d~ 701 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.|+|....- ..+.+.
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~ 101 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence 577899999999999999999999999999999765311 1111344443211 122222
Q ss_pred H-----------HHhcCCchhhhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002306 702 I-----------FARVGAGDCQLRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (938)
Q Consensus 702 i-----------~~~~~~~d~~~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (938)
+ ...+. +......+++++++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+. .|
T Consensus 102 l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~--~~ 174 (207)
T cd03369 102 LDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEF--TN 174 (207)
T ss_pred hcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH-HHHHHHhc--CC
Confidence 2 11111 22334556655544 4555555889999999999999999888777 66666664 37
Q ss_pred CeEEEEeCChHHHHHhhh
Q 002306 770 APTLFATHFHELTALAHE 787 (938)
Q Consensus 770 ~~~l~~TH~~el~~~~~~ 787 (938)
.++|++||+.+....+++
T Consensus 175 ~tiii~th~~~~~~~~d~ 192 (207)
T cd03369 175 STILTIAHRLRTIIDYDK 192 (207)
T ss_pred CEEEEEeCCHHHHhhCCE
Confidence 899999999887655655
No 286
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.60 E-value=3.3e-15 Score=169.84 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=115.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------------hhccccccc---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------------AQVGSFVPC--- 691 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------------aq~g~~vp~--- 691 (938)
-...++++|++.+|++++|+|.||||||||+|.++++.-. .|--..+|.
T Consensus 21 V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsV 100 (500)
T COG1129 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSV 100 (500)
T ss_pred ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccH
Confidence 3567799999999999999999999999999999764311 111111121
Q ss_pred --------cccc-chHH---------HHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002306 692 --------DRAS-ISVR---------DCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 692 --------~~~~-~~~~---------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~ 752 (938)
+... .+++ ..++.++|..........+++...+|+..|+++ +.+..++||||||+.|+..+
T Consensus 101 aeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E 180 (500)
T COG1129 101 AENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKE 180 (500)
T ss_pred HHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0011 2222 356777887544777778888888888888876 45777999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCh-HHHHHhhhcccccccccccceeEEEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~-el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
...+ ..+++.|.+ .|..+||+||.+ |+.++||+ +.-++++....
T Consensus 181 ~~~L-f~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~Dr---------itVlRDG~~v~ 225 (500)
T COG1129 181 TERL-FDLIRRLKA-QGVAIIYISHRLDEVFEIADR---------ITVLRDGRVVG 225 (500)
T ss_pred HHHH-HHHHHHHHh-CCCEEEEEcCcHHHHHHhcCE---------EEEEeCCEEee
Confidence 9999 888999987 799999999995 67789998 55566665543
No 287
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.9e-15 Score=159.96 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=100.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hc-----------------------ccccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QV-----------------------GSFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~-----------------------g~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.... .- ..|+|+...
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 5677999999999999999999999999999998763210 00 123333321
Q ss_pred -cchHHHHHH----------------------HhcCCc----hhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCC
Q 002306 695 -SISVRDCIF----------------------ARVGAG----DCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGR 746 (938)
Q Consensus 695 -~~~~~d~i~----------------------~~~~~~----d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~ 746 (938)
..++.+.+. ..++.. +......+.+|+++++. +.+...+.+|+++|||||++
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 177 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTS 177 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 122222221 111111 11233345667666555 44445588999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
|+|+.....+ ..+++.+.+ +.++|++||+.+.. .++++ ...+.++++.
T Consensus 178 ~LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d~---------i~~l~~G~i~ 226 (252)
T PRK14272 178 ALDPASTARI-EDLMTDLKK--VTTIIIVTHNMHQAARVSDT---------TSFFLVGDLV 226 (252)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 9999888877 667777754 68999999998765 46776 5455555543
No 288
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.60 E-value=4.5e-15 Score=157.19 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=94.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhh-hhhhh--Hhh---------hhcc-ccccc--------------cc---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIR-QVGVN--ILM---------AQVG-SFVPC--------------DR--- 693 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr-~i~~~--~~l---------aq~g-~~vp~--------------~~--- 693 (938)
.+.++++|++.+|++++|+||||||||||++ .+... ..+ ...| .+.|. +.
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTS 88 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCC
Confidence 4567999999999999999999999999972 22100 000 0000 01110 00
Q ss_pred ----ccchH-------H------------HHHHHhcCCch-hhhhcccchHHHHHHHHHHHHh-CCCC--cEEEEeCCCC
Q 002306 694 ----ASISV-------R------------DCIFARVGAGD-CQLRGVSTFMQEMLETASILKG-ATDR--SLIIIDELGR 746 (938)
Q Consensus 694 ----~~~~~-------~------------d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~~~--slvllDEp~~ 746 (938)
..++. + ..++.+++..+ ......+++|+++++...+.+. +.+| +++|+|||++
T Consensus 89 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~ 168 (226)
T cd03270 89 RNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 168 (226)
T ss_pred CCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 00000 0 12334455544 3566677888887776666554 5555 6999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
|+|+.....+ ..++..+.+ .|.++|++||+++...+|++
T Consensus 169 gLD~~~~~~l-~~~l~~~~~-~g~tii~itH~~~~~~~~d~ 207 (226)
T cd03270 169 GLHPRDNDRL-IETLKRLRD-LGNTVLVVEHDEDTIRAADH 207 (226)
T ss_pred CCCHHHHHHH-HHHHHHHHh-CCCEEEEEEeCHHHHHhCCE
Confidence 9999988888 666667766 58999999999988777766
No 289
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.3e-15 Score=162.93 Aligned_cols=142 Identities=17% Similarity=0.118 Sum_probs=98.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hhc-----------------------cccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQV-----------------------GSFVPCDRAS 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq~-----------------------g~~vp~~~~~ 695 (938)
..+.++++|++.+|++++|+||||||||||||+++++... ..- -.|+|+...-
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 4578899999999999999999999999999999876321 011 1233433210
Q ss_pred --chHH--------------------HHHHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCC
Q 002306 696 --ISVR--------------------DCIFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGT 748 (938)
Q Consensus 696 --~~~~--------------------d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gt 748 (938)
..+. ..++..+|.. +.+....+.+|+++++...+++ .+.+|+++|||||++|+
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~L 211 (285)
T PRK14254 132 FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211 (285)
T ss_pred CcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 0111 1233344542 2344556678877666555544 47899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+.....+ ..+++.+.+ +.++|++||+.+.. .++++
T Consensus 212 D~~~~~~l-~~~L~~~~~--~~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 212 DPVATSKI-EDLIEELAE--EYTVVIVTHNMQQAARISDK 248 (285)
T ss_pred CHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHhhcCE
Confidence 99887777 677777765 47899999998775 46665
No 290
>PRK13409 putative ATPase RIL; Provisional
Probab=99.60 E-value=2.8e-15 Score=179.40 Aligned_cols=143 Identities=17% Similarity=0.086 Sum_probs=106.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-------cccccccccc---cch----------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------VGSFVPCDRA---SIS---------------- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-------~g~~vp~~~~---~~~---------------- 697 (938)
+..++++|++..|++++|+||||||||||+|+++++.-... .-+|+|+... ..+
T Consensus 353 ~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 353 FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 34567888889999999999999999999999986532110 1124444321 111
Q ss_pred HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 698 VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 698 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
..+.++.++|..+......+++|+++++...+++ .+.+|+++||||||+|+|+.....+ ..+++.++++.|.++|++|
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tviivs 511 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV-AKAIRRIAEEREATALVVD 511 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhCCCEEEEEe
Confidence 1245667788877778888899877776655554 4789999999999999999988888 6777777654589999999
Q ss_pred CChHHH-HHhhh
Q 002306 777 HFHELT-ALAHE 787 (938)
Q Consensus 777 H~~el~-~~~~~ 787 (938)
||.+++ .++++
T Consensus 512 HD~~~~~~~aDr 523 (590)
T PRK13409 512 HDIYMIDYISDR 523 (590)
T ss_pred CCHHHHHHhCCE
Confidence 998766 46665
No 291
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.60 E-value=4.5e-15 Score=159.73 Aligned_cols=139 Identities=17% Similarity=0.105 Sum_probs=98.3
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc----------------------------------cccc
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG----------------------------------SFVP 690 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g----------------------------------~~vp 690 (938)
+.+++++ +.+|++++|+||||||||||||+++++.-. ..| .++|
T Consensus 16 ~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 16 KLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKP-NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 4457774 789999999999999999999999765311 011 1111
Q ss_pred cccccc------------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002306 691 CDRASI------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 691 ~~~~~~------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~ 751 (938)
...... .....++.++|..+........+++++++...+.+ .+.+|+++|+|||++|+|+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 110000 11234566777776666677778877666555544 47899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
....+ ..+++.+.+ .++++|++||+++... ++++
T Consensus 174 ~~~~l-~~~l~~l~~-~~~tIIiiSHd~~~~~~~ad~ 208 (255)
T cd03236 174 QRLNA-ARLIRELAE-DDNYVLVVEHDLAVLDYLSDY 208 (255)
T ss_pred HHHHH-HHHHHHHHh-cCCEEEEEECCHHHHHHhCCE
Confidence 88888 667777776 5899999999987664 5665
No 292
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=7.3e-15 Score=159.19 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=96.0
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------h--------------------hcccccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A--------------------QVGSFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------a--------------------q~g~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... . +.-.|+|....
T Consensus 22 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 101 (261)
T PRK14263 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF 101 (261)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc
Confidence 456689999999999999999999999999999765421 0 11123333321
Q ss_pred cchHHH--------------------HHHHhcCCch----hhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCC
Q 002306 695 SISVRD--------------------CIFARVGAGD----CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTS 749 (938)
Q Consensus 695 ~~~~~d--------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd 749 (938)
...+.+ .++..++... ........+++++++...+. +.+.+|+++|||||++|+|
T Consensus 102 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD 181 (261)
T PRK14263 102 SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181 (261)
T ss_pred cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 111111 2333444322 12233456776666655544 4578999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+.....+ +.++..+.+ +.++|++||+++. .+++++
T Consensus 182 ~~~~~~l-~~~l~~~~~--~~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 182 PIATRRV-EELMVELKK--DYTIALVTHNMQQAIRVADT 217 (261)
T ss_pred HHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHHhCCE
Confidence 9888887 677777753 6899999999875 467776
No 293
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.9e-15 Score=154.59 Aligned_cols=151 Identities=23% Similarity=0.242 Sum_probs=119.9
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------hhcccccccccccc-----------------
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------AQVGSFVPCDRASI----------------- 696 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------aq~g~~vp~~~~~~----------------- 696 (938)
+++|..+...+++|.|++||||||++++|+++.-. +.-|.|+|....++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 45565566579999999999999999999876422 23456666554332
Q ss_pred -----------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 697 -----------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 697 -----------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
.-+|.+..-+|...-+.+..+++|++.+|...|-+ ..+.|.|+|||||.+++|..-...| .-.+|.|
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei-lpylERL 174 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI-LPYLERL 174 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH-HHHHHHH
Confidence 23677778888888888888999966655555544 5899999999999999999888888 8899999
Q ss_pred HhcCCCeEEEEeCCh-HHHHHhhhcccccccccccceeEEEEEEE
Q 002306 765 VEEIRAPTLFATHFH-ELTALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~-el~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
.++.+.+++++||.. |+++++++ ..-+.++++.+.
T Consensus 175 ~~e~~IPIlYVSHS~~Ev~RLAd~---------vV~le~GkV~A~ 210 (352)
T COG4148 175 RDEINIPILYVSHSLDEVLRLADR---------VVVLENGKVKAS 210 (352)
T ss_pred HHhcCCCEEEEecCHHHHHhhhhe---------EEEecCCeEEec
Confidence 998999999999995 77789998 777888888764
No 294
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=5.8e-15 Score=160.92 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=95.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hhcc-----------------------ccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq~g-----------------------~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++... ...| .|+|.+..-
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 117 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF 117 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccc
Confidence 467799999999999999999999999999999876420 1111 233333210
Q ss_pred -chHHHHHH----------------------HhcC----CchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002306 696 -ISVRDCIF----------------------ARVG----AGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d~i~----------------------~~~~----~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~g 747 (938)
..+.+.+. ..++ ..+.+......+|+++++...+. ..+.+|+++|||||++|
T Consensus 118 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~ 197 (271)
T PRK14238 118 PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA 197 (271)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 12222221 1111 11122334455666666554444 45789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..+.+ +.++|++||+.+.. .++++
T Consensus 198 LD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~i~~~~d~ 235 (271)
T PRK14238 198 LDPISTLKV-EELVQELKK--DYSIIIVTHNMQQAARISDK 235 (271)
T ss_pred CCHHHHHHH-HHHHHHHHc--CCEEEEEEcCHHHHHHhCCE
Confidence 999988888 666677764 68999999998764 57776
No 295
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.59 E-value=4e-15 Score=180.33 Aligned_cols=153 Identities=16% Similarity=0.073 Sum_probs=111.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc-----c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA-----S 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~-----~ 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. ...-.|+|+... .
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 467899999999999999999999999999999754210 001134444320 0
Q ss_pred chH----------------------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q 002306 696 ISV----------------------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 696 ~~~----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~ 751 (938)
..+ +..++..+|.. +........+|+++++...|++. +.+|+|+||||||+|+|+.
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~ 497 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111 22455667774 45566778899888877666654 7899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
....+ ..++..+.++.|.++||+|||++++ .++++ ...+.++++.
T Consensus 498 ~~~~i-~~ll~~l~~~~g~tvi~isHdl~~v~~~~dr---------i~vl~~G~iv 543 (623)
T PRK10261 498 IRGQI-INLLLDLQRDFGIAYLFISHDMAVVERISHR---------VAVMYLGQIV 543 (623)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 88888 7777777664589999999998766 57777 5555566553
No 296
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.1e-14 Score=140.97 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=106.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc---------------cccccccccc------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG---------------SFVPCDRASI------------ 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g---------------~~vp~~~~~~------------ 696 (938)
.+..++++++.+|+++++.||+||||||+|+.+|+++-..+.- ..|.++.+-+
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafg 98 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG 98 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHH
Confidence 3566999999999999999999999999999999876443211 0111222111
Q ss_pred ------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002306 697 ------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (938)
Q Consensus 697 ------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (938)
...++.+..+|..+.-.+..-.+|++|+|..-|.++ +.+|.+++||||+..+|...+..+-.-+++-
T Consensus 99 L~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 99 LQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 123355677787777777778889999998777765 7899999999999999999999984444444
Q ss_pred HHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 764 LVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 764 l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
. +..|..++++||+.|.+- ++++
T Consensus 179 w-~~tgk~~lliTH~ieEAlflatr 202 (259)
T COG4525 179 W-QETGKQVLLITHDIEEALFLATR 202 (259)
T ss_pred H-HHhCCeEEEEeccHHHHHhhhhe
Confidence 4 448999999999987764 4444
No 297
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=158.17 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=94.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hhcc-----------------------ccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq~g-----------------------~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. ...| .|+|+...-
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 456799999999999999999999999999999865321 0111 223332110
Q ss_pred -chHHHH--------------------HHHhcCCch----hhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCC
Q 002306 696 -ISVRDC--------------------IFARVGAGD----CQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTS 749 (938)
Q Consensus 696 -~~~~d~--------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd 749 (938)
..+.+. ++..++..+ ........+|+++++...++ ..+.+|+++|||||++|+|
T Consensus 104 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 183 (264)
T PRK14243 104 PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183 (264)
T ss_pred cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 011221 122223221 12233445676666655444 4578999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+.....+ ..++..+.+ +.++|++||+.+. ..++++
T Consensus 184 ~~~~~~l-~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~ 219 (264)
T PRK14243 184 PISTLRI-EELMHELKE--QYTIIIVTHNMQQAARVSDM 219 (264)
T ss_pred HHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHHhCCE
Confidence 9988887 777777765 4799999999765 467766
No 298
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=8.6e-15 Score=158.77 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=96.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hcc-----------------------cccccccc--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRA-- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~g-----------------------~~vp~~~~-- 694 (938)
.+.++++|++.+|++++|+|||||||||||++++++.-.. ..| .|+|....
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 4677999999999999999999999999999998764321 011 12232211
Q ss_pred cchHHHH----------------------HHHhcCCch----hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 002306 695 SISVRDC----------------------IFARVGAGD----CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRG 747 (938)
Q Consensus 695 ~~~~~d~----------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~g 747 (938)
...+.+. ++..++..+ ........+|+++++...+.+ .+.+|+++|||||++|
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~ 180 (261)
T PRK14258 101 PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180 (261)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0112221 222333211 223344567776666555544 4789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..++.+.|.++|++||+++.. +++++
T Consensus 181 LD~~~~~~l-~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 181 LDPIASMKV-ESLIQSLRLRSELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred CCHHHHHHH-HHHHHHHHHhCCCEEEEEECCHHHHHHhcCE
Confidence 999888877 6666666543489999999998765 57776
No 299
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=99.58 E-value=2.2e-14 Score=139.61 Aligned_cols=129 Identities=24% Similarity=0.332 Sum_probs=95.9
Q ss_pred cEEEEEeeccccCCceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCce
Q 002306 139 PVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVM 218 (938)
Q Consensus 139 nyL~aI~~~~~~~~~~iGla~~D~stG~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~ 218 (938)
|||+||... +....+|+||+|+|||+|++++|.| +++|.+.|.+++|+|||++++... .........+......
T Consensus 1 Nyl~aI~~~--~~~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~~~~-~~~~~~~~~~~~~~~~ 74 (137)
T PF05188_consen 1 NYLAAIYEK--NDEDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEGFSS-SDISALLSSLKNSFFK 74 (137)
T ss_dssp -EEEEEEEE--TCSSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETTCSH-HHHHHHHHCCTTTCCE
T ss_pred CEEEEEEEe--cCCCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCCCcc-cccchhhhhhccccce
Confidence 799999874 2345799999999999999999997 889999999999999999987321 1111122223333444
Q ss_pred eeecccccccchhHHHHHHHhhcCCCCCCcccc-CCcchHHHHHHHHHHHHHHhccc
Q 002306 219 LTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLV-SGFEIAPGALGALLSYAELLSDE 274 (938)
Q Consensus 219 i~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~a~~AlgaLL~YL~~~~~~ 274 (938)
++..+.+.|+...+.+.+.+.|. ......++. ...+.+++|+|+||+||+.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~Al~all~Yl~~t~~~ 130 (137)
T PF05188_consen 75 VTETPSWYFDSEFASEDIEEQFG-VADLDGFGLEEDKELALSALGALLKYLEETQKS 130 (137)
T ss_dssp EEEETCGGGSHHHHHHHHHHHCT-SSSTCCCTTGGGGHHHHHHHHHHHHHHHHTTTC
T ss_pred eeecchhhhhhHHHHHHHHHhhc-cccccccCccCCCHHHHHHHHHHHHHHHHHCcc
Confidence 56667778888778888888886 344455544 56788999999999999999864
No 300
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.58 E-value=6.7e-15 Score=154.54 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=111.7
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-------------------------------hhhccccccccc-
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------------------------------MAQVGSFVPCDR- 693 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-------------------------------laq~g~~vp~~~- 693 (938)
.++++|++..|++.+|+|-+|||||||+|++..+.- ..|--..+|...
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence 468999999999999999999999999999753320 011111122211
Q ss_pred ----------------ccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q 002306 694 ----------------ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 694 ----------------~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i 756 (938)
.+-.....++..+|+.+...+....+|++|+|..-+.++ +++|+++|||||++.|||.-+..+
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 011223356788899888888889999999987666654 899999999999999999999988
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
-..+++ |..+.+.|++|+|||++.+ ++.++ +.-++.+++.
T Consensus 204 QdeLl~-Lq~~l~KTIvFitHDLdEAlriG~r---------IaimkdG~iv 244 (386)
T COG4175 204 QDELLE-LQAKLKKTIVFITHDLDEALRIGDR---------IAIMKDGEIV 244 (386)
T ss_pred HHHHHH-HHHHhCCeEEEEecCHHHHHhccce---------EEEecCCeEE
Confidence 555555 4444789999999998665 67776 5556666654
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.7e-15 Score=177.14 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=97.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------hcccccccccc---cc--------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA---SI-------------- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------q~g~~vp~~~~---~~-------------- 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... .+| |+|.... ..
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~ 93 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLG-KLRQDQFAFEEFTVLDTVIMGHTELW 93 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccCCcCCCCcHHHHHHHhhHHHH
Confidence 4566999999999999999999999999999998653211 122 3333210 00
Q ss_pred ---------------------------------------hHHHHHHHhcCCchhhh-hcccchHHHHHHHHHHHHh-CCC
Q 002306 697 ---------------------------------------SVRDCIFARVGAGDCQL-RGVSTFMQEMLETASILKG-ATD 735 (938)
Q Consensus 697 ---------------------------------------~~~d~i~~~~~~~d~~~-~~~s~f~~e~~~~~~il~~-a~~ 735 (938)
..+..++..+|..+... ...+++|+++++...+++. +.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~ 173 (530)
T PRK15064 94 EVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSN 173 (530)
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcC
Confidence 01224455666654332 3567888888777666654 789
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 736 RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 736 ~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|+++||||||+|+|+.....+ ..++ .+ .|.++|++||+.++. .+|++
T Consensus 174 p~lLlLDEPt~~LD~~~~~~l-~~~l---~~-~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 174 PDILLLDEPTNNLDINTIRWL-EDVL---NE-RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred CCEEEEcCCCcccCHHHHHHH-HHHH---Hh-CCCeEEEEeCCHHHHHhhcce
Confidence 999999999999999887766 4443 33 588999999998764 57776
No 302
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.2e-15 Score=180.13 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=111.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------------------hhcccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------------------AQVGSF 688 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------------------aq~g~~ 688 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.-. ..+ .|
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i-g~ 108 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM-AM 108 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE-EE
Confidence 467799999999999999999999999999998754210 012 23
Q ss_pred ccccc-----ccchH----------------------HHHHHHhcCCch---hhhhcccchHHHHHHHHHHHHh-CCCCc
Q 002306 689 VPCDR-----ASISV----------------------RDCIFARVGAGD---CQLRGVSTFMQEMLETASILKG-ATDRS 737 (938)
Q Consensus 689 vp~~~-----~~~~~----------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-a~~~s 737 (938)
|++.. ..+++ +..++..+|+.+ .+.....++|++|++...|+++ +.+|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 44331 01111 223456667642 3556678899888877666654 78999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 738 LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 738 lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
++||||||+|+|+.....+ ..+++.+.++.|.++|++||+.+.+ .+|++ ...+.++++.
T Consensus 189 lLllDEPt~~LD~~~~~~l-~~ll~~l~~~~g~tvi~itHdl~~~~~~adr---------i~vl~~G~i~ 248 (623)
T PRK10261 189 VLIADEPTTALDVTIQAQI-LQLIKVLQKEMSMGVIFITHDMGVVAEIADR---------VLVMYQGEAV 248 (623)
T ss_pred EEEEeCCCCccCHHHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE---------EEEeeCCeec
Confidence 9999999999999988888 7788888754589999999998664 68887 5556666654
No 303
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1e-14 Score=158.61 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=95.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------------hhcccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------------AQVGSFVPCDRA 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------------aq~g~~vp~~~~ 694 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-. .+.-.|+|....
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 577899999999999999999999999999999865321 001124443321
Q ss_pred c--chHHHH----------------------HHHhcCCc----hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 002306 695 S--ISVRDC----------------------IFARVGAG----DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELG 745 (938)
Q Consensus 695 ~--~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~ 745 (938)
- .++.+. ++..++.. +........+|+++++...+.+ .+.+|+++|||||+
T Consensus 110 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 189 (265)
T PRK14252 110 PFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPT 189 (265)
T ss_pred CCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 011111 12223321 1223344566766666555444 57899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+|+.....+ ..++..+.+ ++++|++||+.+.. .++++
T Consensus 190 ~gLD~~~~~~l-~~~l~~l~~--~~tiiivth~~~~~~~~~d~ 229 (265)
T PRK14252 190 SALDPIATASI-EELISDLKN--KVTILIVTHNMQQAARVSDY 229 (265)
T ss_pred ccCCHHHHHHH-HHHHHHHHh--CCEEEEEecCHHHHHHhCCE
Confidence 99999888877 667777764 58999999998765 57776
No 304
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.3e-14 Score=171.55 Aligned_cols=139 Identities=15% Similarity=0.081 Sum_probs=99.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------hcccccccccc-----cch----------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA-----SIS---------- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------q~g~~vp~~~~-----~~~---------- 697 (938)
..+.++++|.+.+|++++|+||||||||||||++++..... .+| |+|+... ...
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~~l~~~~~~~~~~~~~~~ 403 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLEFLRADESPLQHLARLAP 403 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchhhCCccchHHHHHHHhCc
Confidence 46888999999999999999999999999999998653211 122 3443210 001
Q ss_pred -----HHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q 002306 698 -----VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA 770 (938)
Q Consensus 698 -----~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~ 770 (938)
.+..++.+++.. +......+++|+++++...+++ .+.+|.++||||||+|+|+.....+ ..++..+ +.
T Consensus 404 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l-~~~L~~~----~g 478 (638)
T PRK10636 404 QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL-TEALIDF----EG 478 (638)
T ss_pred hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH-HHHHHHc----CC
Confidence 123456667764 3566777888877776655554 4789999999999999999888777 4444433 34
Q ss_pred eEEEEeCChHHH-HHhhh
Q 002306 771 PTLFATHFHELT-ALAHE 787 (938)
Q Consensus 771 ~~l~~TH~~el~-~~~~~ 787 (938)
++|++|||.++. .+|++
T Consensus 479 tvi~vSHd~~~~~~~~d~ 496 (638)
T PRK10636 479 ALVVVSHDRHLLRSTTDD 496 (638)
T ss_pred eEEEEeCCHHHHHHhCCE
Confidence 899999998765 57776
No 305
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=8.6e-15 Score=159.71 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=101.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----hhcc-----------------------ccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----AQVG-----------------------SFVPCDRAS 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----aq~g-----------------------~~vp~~~~~ 695 (938)
..+.++++|++.+|++++|+||||||||||+|+++++... ...| .|+|.+..-
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 3577899999999999999999999999999999876321 0111 234433211
Q ss_pred --chHHHHH----------------------HHhcCCch----hhhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCC
Q 002306 696 --ISVRDCI----------------------FARVGAGD----CQLRGVSTFMQEMLETASI-LKGATDRSLIIIDELGR 746 (938)
Q Consensus 696 --~~~~d~i----------------------~~~~~~~d----~~~~~~s~f~~e~~~~~~i-l~~a~~~slvllDEp~~ 746 (938)
.++.+.+ +..++..+ .+......+|+++++...+ .+.+.+|+++|||||++
T Consensus 118 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~ 197 (272)
T PRK14236 118 FPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197 (272)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 1222222 22233321 1223345566666555444 44588999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
|+|+.....+ +.++..+.+ +.++|++||+.+.. +++++ ...+.++++.
T Consensus 198 gLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~~~~~~d~---------i~~l~~G~i~ 246 (272)
T PRK14236 198 ALDPISTLKI-EELITELKS--KYTIVIVTHNMQQAARVSDY---------TAFMYMGKLV 246 (272)
T ss_pred cCCHHHHHHH-HHHHHHHHh--CCeEEEEeCCHHHHHhhCCE---------EEEEECCEEE
Confidence 9999887777 677777764 58999999998764 57776 5455555543
No 306
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.58 E-value=7.5e-15 Score=158.87 Aligned_cols=141 Identities=13% Similarity=-0.055 Sum_probs=93.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccccc--hH---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SV--- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~~--~~--- 698 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... ...-.|+|....-+ .+
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~n 114 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN 114 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHh
Confidence 567799999999999999999999999999999765211 01112344332110 00
Q ss_pred -----------HHHHHHhcCCchh-----------hhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHH
Q 002306 699 -----------RDCIFARVGAGDC-----------QLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 699 -----------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+...+...+..+. +......+++++++. +.+...+.+|+++|||||++|+|+.....
T Consensus 115 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~ 194 (257)
T cd03288 115 LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 1122222233221 112234566655554 44444588999999999999999987766
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+ +.++..+. .++++|++||+++....+++
T Consensus 195 l-~~~l~~~~--~~~tiii~sh~~~~~~~~dr 223 (257)
T cd03288 195 L-QKVVMTAF--ADRTVVTIAHRVSTILDADL 223 (257)
T ss_pred H-HHHHHHhc--CCCEEEEEecChHHHHhCCE
Confidence 6 66666654 37999999999887766666
No 307
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.4e-14 Score=156.28 Aligned_cols=141 Identities=17% Similarity=0.089 Sum_probs=93.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--h--hhc-----------------------ccccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--M--AQV-----------------------GSFVPCDRASI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--l--aq~-----------------------g~~vp~~~~~~ 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++.- . ... ..|+|.....+
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF 96 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence 46679999999999999999999999999999986531 0 011 13344332111
Q ss_pred --hHHHH----------------------HHHhcCCch----hhhhcccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCC
Q 002306 697 --SVRDC----------------------IFARVGAGD----CQLRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRG 747 (938)
Q Consensus 697 --~~~d~----------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~-il~~a~~~slvllDEp~~g 747 (938)
++.+. ++.++|..+ ........+|+++++... +...+.+|+++|||||++|
T Consensus 97 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~g 176 (250)
T PRK14266 97 PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176 (250)
T ss_pred cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 11111 122233211 122334556665555544 4445789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ ..++..+.+ +.++|++||+.+.. ..+++
T Consensus 177 LD~~~~~~l-~~~l~~~~~--~~tiii~sh~~~~~~~~~~~ 214 (250)
T PRK14266 177 LDPISTTKI-EDLIHKLKE--DYTIVIVTHNMQQATRVSKY 214 (250)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCeEEEEECCHHHHHhhcCE
Confidence 999888887 666666653 78999999997654 45554
No 308
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1e-14 Score=162.58 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=111.7
Q ss_pred cEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------h--------------
Q 002306 625 DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A-------------- 683 (938)
Q Consensus 625 ~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------a-------------- 683 (938)
.+.+++...-+- .+...+.++++|++.+|++++|+|||||||||||+++++..-. +
T Consensus 80 ~i~~~nls~~y~---~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 80 VFEIRNFNFWYM---NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred eEEEEeeEEEec---CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 466665543221 1224688899999999999999999999999999999865421 0
Q ss_pred ------hccccccccccc--chHHHHH----------------------HHhcCCc----hhhhhcccchHHHHHHHHHH
Q 002306 684 ------QVGSFVPCDRAS--ISVRDCI----------------------FARVGAG----DCQLRGVSTFMQEMLETASI 729 (938)
Q Consensus 684 ------q~g~~vp~~~~~--~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~i 729 (938)
+.-.|+|+...- .++.+.+ +...+.. +.+....+.+|+++++...+
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 112344443211 1111221 2233321 23345556778777766555
Q ss_pred HH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 730 LK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 730 l~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
++ .+.+|+++|||||++|+|+.....+ ..++..+.+ ++++|++||+++.. +++++ ...+.++++.
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i-~~~i~~l~~--~~Tii~iTH~l~~i~~~~Dr---------iivl~~G~i~ 303 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKI-EELILELKK--KYSIIIVTHSMAQAQRISDE---------TVFFYQGWIE 303 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCCE---------EEEEECCEEE
Confidence 55 4789999999999999999888887 677777764 69999999998875 56887 5555555543
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.57 E-value=5.8e-15 Score=192.51 Aligned_cols=153 Identities=12% Similarity=0.159 Sum_probs=116.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cch--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SIS-- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~-- 697 (938)
..+.++++|++.+|++++|+|||||||||+||+++++... .++ .++|+... .++
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I-G~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL-GMCPQHNILFHHLTVA 1021 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE-EEEecCCcCCCCCCHH
Confidence 4578999999999999999999999999999999765311 112 24454321 111
Q ss_pred -------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 698 -------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 698 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
.++.++.++|+.+......+++|++|+|...+++ .+.+|+++||||||+|+|+..+..+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 1334667778777777778889988887766555 4789999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
+.+++.+. .|.++|++||+++.+ .++++ ...+.++++.+.
T Consensus 1101 ~~lL~~l~--~g~TIIltTHdmdea~~laDr---------I~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1101 WDLLLKYR--SGRTIIMSTHHMDEADLLGDR---------IAIISQGRLYCS 1141 (2272)
T ss_pred HHHHHHHh--CCCEEEEEECCHHHHHHhCCE---------EEEEECCEEEEe
Confidence 88888874 389999999998776 47887 566677776554
No 310
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.57 E-value=1e-14 Score=155.90 Aligned_cols=143 Identities=16% Similarity=0.047 Sum_probs=105.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---hhc--------------------------ccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---AQV--------------------------GSFVPCDRA 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---aq~--------------------------g~~vp~~~~ 694 (938)
.+.++++|++..|++++|+|.+||||||+.++|.++.-- ... -++++++..
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 456799999999999999999999999999998654320 000 123333221
Q ss_pred c---------------------c-------hHHHHHHHhcCCch---hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEe
Q 002306 695 S---------------------I-------SVRDCIFARVGAGD---CQLRGVSTFMQEMLETASILK-GATDRSLIIID 742 (938)
Q Consensus 695 ~---------------------~-------~~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~-~a~~~slvllD 742 (938)
. . .....++..+|..+ .+......||++|+|...|.. .+.+|+|+|.|
T Consensus 99 ~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIAD 178 (316)
T COG0444 99 TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178 (316)
T ss_pred hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeC
Confidence 0 0 01223455666554 234455678999988766554 48899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|||++||......| ..+++.+.++.|+++||+|||+.++ ++||+
T Consensus 179 EPTTALDvt~QaqI-l~Ll~~l~~e~~~aiilITHDl~vva~~aDr 223 (316)
T COG0444 179 EPTTALDVTVQAQI-LDLLKELQREKGTALILITHDLGVVAEIADR 223 (316)
T ss_pred CCcchhhHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcce
Confidence 99999999999988 7888888877899999999999865 68887
No 311
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.57 E-value=8.5e-15 Score=151.54 Aligned_cols=133 Identities=12% Similarity=0.092 Sum_probs=89.7
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------------------------hccccccccccc----
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------------QVGSFVPCDRAS---- 695 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------------------------q~g~~vp~~~~~---- 695 (938)
.++++++.+| +++|+|||||||||++++++.+.-.. ++ .++++....
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~vfq~~~~~~~~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEV-TLTFDNSDGRYSI 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEE-EEEEEcCCCceeE
Confidence 3566666778 99999999999999999987553110 11 122222211
Q ss_pred --chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q 002306 696 --ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEI 768 (938)
Q Consensus 696 --~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-----a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~ 768 (938)
...++.++.. .+........+++++++...+.+. ..++.++|+|||++|+|+.....+ ..+++.+.+
T Consensus 92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l-~~~l~~~~~-- 165 (197)
T cd03278 92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERF-ARLLKEFSK-- 165 (197)
T ss_pred EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHH-HHHHHHhcc--
Confidence 1223445554 233344456677777666555543 256799999999999999988888 667777654
Q ss_pred CCeEEEEeCChHHHHHhhh
Q 002306 769 RAPTLFATHFHELTALAHE 787 (938)
Q Consensus 769 ~~~~l~~TH~~el~~~~~~ 787 (938)
+.++|++||+++....+++
T Consensus 166 ~~tiIiitH~~~~~~~~d~ 184 (197)
T cd03278 166 ETQFIVITHRKGTMEAADR 184 (197)
T ss_pred CCEEEEEECCHHHHhhcce
Confidence 6889999999987766655
No 312
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=156.59 Aligned_cols=141 Identities=14% Similarity=0.089 Sum_probs=95.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hcc-----------------------ccccccccc-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVG-----------------------SFVPCDRAS- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~g-----------------------~~vp~~~~~- 695 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-.. ..| .|+|.+..-
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 4677999999999999999999999999999998753210 011 123322110
Q ss_pred -chHHH----------------------HHHHhcCCc----hhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCC
Q 002306 696 -ISVRD----------------------CIFARVGAG----DCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRG 747 (938)
Q Consensus 696 -~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~g 747 (938)
.++.+ .++..+|.. +........+|+++++...++ ..+.+|+++|||||++|
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 180 (259)
T PRK14260 101 PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180 (259)
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 11111 122233332 223334456776666655444 45789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+.....+ +.++..+.+ +.++|++||+.+.. .++++
T Consensus 181 LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~i~~~~d~ 218 (259)
T PRK14260 181 LDPIATMKV-EELIHSLRS--ELTIAIVTHNMQQATRVSDF 218 (259)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhcCe
Confidence 999888877 666766654 58999999998765 56766
No 313
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=8.8e-15 Score=177.56 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=97.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh------cc---ccccccc-----ccch-----------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------VG---SFVPCDR-----ASIS----------- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq------~g---~~vp~~~-----~~~~----------- 697 (938)
..+.++++|++.+|++++|+||||||||||||++++...... .+ .|+|... ..++
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~ 93 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ 93 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence 456779999999999999999999999999999987532110 00 1222110 0000
Q ss_pred ----------------------------------HHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEE
Q 002306 698 ----------------------------------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIII 741 (938)
Q Consensus 698 ----------------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvll 741 (938)
.+..++..+|.. +......++||+++++...+.+. +.+|+++||
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLL 173 (638)
T PRK10636 94 LEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL 173 (638)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEE
Confidence 112345556664 34566778899888777666654 789999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 742 DEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
||||+|+|+.....+ .+.|.+ .+.++|++|||.++. .+|++
T Consensus 174 DEPtn~LD~~~~~~L----~~~L~~-~~~tviivsHd~~~l~~~~d~ 215 (638)
T PRK10636 174 DEPTNHLDLDAVIWL----EKWLKS-YQGTLILISHDRDFLDPIVDK 215 (638)
T ss_pred cCCCCcCCHHHHHHH----HHHHHh-CCCeEEEEeCCHHHHHHhcCE
Confidence 999999999766554 333444 467999999997765 56766
No 314
>PLN03211 ABC transporter G-25; Provisional
Probab=99.56 E-value=5.2e-15 Score=179.25 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=108.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hcccccccccc---cchH---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV--- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~---~~~~--- 698 (938)
..+.+++++.+.+|++++|+|||||||||||+++++..... +.-+|||++.. .+++
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 34667999999999999999999999999999998653210 11235554321 1111
Q ss_pred ---------------------HHHHHHhcCCchhhh-----hcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChh
Q 002306 699 ---------------------RDCIFARVGAGDCQL-----RGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 699 ---------------------~d~i~~~~~~~d~~~-----~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~ 751 (938)
++.++..+|+.+... .....+|+++++. +.+...+.+|+++|||||++|+|+.
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 234455556543221 1234567665554 4445558899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChH--HHHHhhhcccccccccccceeEEEEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHE--LTALAHENANEFNTKQMVGVANYHVSAHI 809 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~e--l~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (938)
....+ ..+++.+++ .|.++|++||+++ +.+++++ ...+.++++.+..
T Consensus 241 ~~~~l-~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~---------iilL~~G~iv~~G 289 (659)
T PLN03211 241 AAYRL-VLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDS---------VLVLSEGRCLFFG 289 (659)
T ss_pred HHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhhce---------EEEecCCcEEEEC
Confidence 88888 677777876 5899999999974 5678887 6666777765543
No 315
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=165.48 Aligned_cols=143 Identities=19% Similarity=0.106 Sum_probs=109.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------------hhccccccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------------AQVGSFVPCDRAS 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------------aq~g~~vp~~~~~ 695 (938)
.+.+|++|++.+|++++|+|.+||||||+.+++.++.-. ...-+++|++...
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 456799999999999999999999999999987533110 0111234443210
Q ss_pred ---------------------------chHHHHHHHhcCCchhhhh--cccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002306 696 ---------------------------ISVRDCIFARVGAGDCQLR--GVSTFMQEMLETASILKG-ATDRSLIIIDELG 745 (938)
Q Consensus 696 ---------------------------~~~~d~i~~~~~~~d~~~~--~~s~f~~e~~~~~~il~~-a~~~slvllDEp~ 745 (938)
.....++|.++|..+.... ....||++|+|.+.|..+ +.+|+|+|+||||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 0112356778888776665 667889999887766654 8899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++||+.....| ..+++.+.++.|.++||+|||+++. ++||+
T Consensus 183 TaLDvt~q~qI-L~llk~l~~e~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 183 TALDVTTQAQI-LDLLKDLQRELGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred cccCHHHHHHH-HHHHHHHHHHcCcEEEEEcCCHHHHHHhcCe
Confidence 99999999888 7777888877899999999999986 58887
No 316
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.55 E-value=1.2e-14 Score=174.22 Aligned_cols=138 Identities=15% Similarity=0.056 Sum_probs=94.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------hcccccccccc---cchHHHHH-------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA---SISVRDCI------- 702 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------q~g~~vp~~~~---~~~~~d~i------- 702 (938)
..+.++++|++.+|++++|+||||||||||||+++++.... ++ .|+|.... .+++.+.+
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i-~~v~Q~~~~~~~~tv~e~l~~~~~~~ 98 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV-GYLPQEPQLDPEKTVRENVEEGVAEV 98 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEecCCCCCCCCcHHHHHHHhhHHH
Confidence 34566999999999999999999999999999998764211 12 24554421 11222221
Q ss_pred --------------------------------------------------HHhcCCchhhhhcccchHHHHHHHHHHHH-
Q 002306 703 --------------------------------------------------FARVGAGDCQLRGVSTFMQEMLETASILK- 731 (938)
Q Consensus 703 --------------------------------------------------~~~~~~~d~~~~~~s~f~~e~~~~~~il~- 731 (938)
+.++|.. ......+++|+++++...+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~a 177 (556)
T PRK11819 99 KAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCRL 177 (556)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHHH
Confidence 2222332 134456778877776655555
Q ss_pred hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 732 GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 732 ~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+.+|+++||||||+|+|+.....+ ..++..+ +.++|++||+.++. .++++
T Consensus 178 l~~~p~vlLLDEPt~~LD~~~~~~l-~~~L~~~----~~tviiisHd~~~~~~~~d~ 229 (556)
T PRK11819 178 LLEKPDMLLLDEPTNHLDAESVAWL-EQFLHDY----PGTVVAVTHDRYFLDNVAGW 229 (556)
T ss_pred HhCCCCEEEEcCCCCcCChHHHHHH-HHHHHhC----CCeEEEEeCCHHHHHhhcCe
Confidence 4789999999999999999877766 4444433 35899999998765 46666
No 317
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=2.1e-14 Score=141.10 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=111.6
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH---------------------hhhhcccc----ccccc---
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------LMAQVGSF----VPCDR--- 693 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------~laq~g~~----vp~~~--- 693 (938)
+-.-.|+++|+++.|++-+|+|||||||||+|..|.+-+ -.|+.|.- -|.-.
T Consensus 17 GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~l 96 (249)
T COG4674 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENL 96 (249)
T ss_pred ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhc
Confidence 345678999999999999999999999999999985422 12333311 01000
Q ss_pred --------------------------ccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 002306 694 --------------------------ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGR 746 (938)
Q Consensus 694 --------------------------~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~ 746 (938)
..-..+|.++..+|+.+......+.+|-+.+|.-.|-.. +.+|.|+++|||.+
T Consensus 97 tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvA 176 (249)
T COG4674 97 TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVA 176 (249)
T ss_pred cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccC
Confidence 011124566777888777777777777667666666554 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-HhhhcccccccccccceeEEEEEEE
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
|+.-.+.... ..++..++. ++.++++-||+++.+ ++++ ...+..+++.+.
T Consensus 177 GMTd~Et~~t-aeLl~~la~--~hsilVVEHDM~Fvr~~A~~---------VTVlh~G~VL~E 227 (249)
T COG4674 177 GMTDAETEKT-AELLKSLAG--KHSILVVEHDMGFVREIADK---------VTVLHEGSVLAE 227 (249)
T ss_pred CCcHHHHHHH-HHHHHHHhc--CceEEEEeccHHHHHHhhhe---------eEEEeccceeec
Confidence 9998888888 677788875 799999999999875 6665 444555566554
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.6e-14 Score=172.54 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=100.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------hcccccccccc-----cchH---------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA-----SISV--------- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------q~g~~vp~~~~-----~~~~--------- 698 (938)
..+.++++|++.+|++++|+||||||||||||+++++.... .+ .|+|+... ..++
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANI-GYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEE-EEEcccccccCCCCCcHHHHHHHhcc
Confidence 45788999999999999999999999999999998653110 11 24444321 0111
Q ss_pred -------HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002306 699 -------RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (938)
Q Consensus 699 -------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (938)
+..++.++|.. +......+++|+++++...+++. +.+|.++|||||++|+|+.....+ ..++..+ +
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~----~ 485 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESL-NMALEKY----E 485 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH-HHHHHHC----C
Confidence 23455667763 45666778888887776665554 789999999999999999887777 4444433 4
Q ss_pred CeEEEEeCChHHH-HHhhh
Q 002306 770 APTLFATHFHELT-ALAHE 787 (938)
Q Consensus 770 ~~~l~~TH~~el~-~~~~~ 787 (938)
.++|++||+.++. .+|++
T Consensus 486 ~tvi~vsHd~~~~~~~~d~ 504 (530)
T PRK15064 486 GTLIFVSHDREFVSSLATR 504 (530)
T ss_pred CEEEEEeCCHHHHHHhCCE
Confidence 5899999998765 46766
No 319
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=1.2e-14 Score=149.04 Aligned_cols=154 Identities=17% Similarity=0.085 Sum_probs=110.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------hhccccccccccc--c----------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------AQVGSFVPCDRAS--I---------- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------aq~g~~vp~~~~~--~---------- 696 (938)
++.+|++|++.+|+.++|+|+||||||||||.++++... +-.+.|-|.-..+ +
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~ 120 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLT 120 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCcc
Confidence 567799999999999999999999999999999876422 2222333322211 0
Q ss_pred -----hHHHHHHHhcCCchhhhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q 002306 697 -----SVRDCIFARVGAGDCQLRGVSTFMQEML-ETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA 770 (938)
Q Consensus 697 -----~~~d~i~~~~~~~d~~~~~~s~f~~e~~-~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~ 770 (938)
..++.|..--.+.+.+..+..++|.+|. |++..++...+|+++|+||..+--|+.=...- ...++.+.+ .+.
T Consensus 121 ~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~-~~rl~e~~~-~~~ 198 (249)
T COG1134 121 RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC-LERLNELVE-KNK 198 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH-HHHHHHHHH-cCC
Confidence 1123343333456778888888888875 56777777889999999999999998766654 445555544 479
Q ss_pred eEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 771 PTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 771 ~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
++|++||+++.. ++|++ ..-+..+++...
T Consensus 199 tiv~VSHd~~~I~~~Cd~---------~i~l~~G~i~~~ 228 (249)
T COG1134 199 TIVLVSHDLGAIKQYCDR---------AIWLEHGQIRME 228 (249)
T ss_pred EEEEEECCHHHHHHhcCe---------eEEEeCCEEEEc
Confidence 999999998765 68887 556677776654
No 320
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.54 E-value=1.9e-14 Score=160.28 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=116.3
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcc------ccccccc----
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVG------SFVPCDR---- 693 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g------~~vp~~~---- 693 (938)
.++++|++.+|++++|.|.|||||||||+++.++.-. .-+| ..||.-.
T Consensus 20 nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~EN 99 (501)
T COG3845 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAEN 99 (501)
T ss_pred cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhh
Confidence 4579999999999999999999999999998654211 0111 1122100
Q ss_pred ----------cc------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q 002306 694 ----------AS------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 694 ----------~~------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i 756 (938)
.. -..+..+..++|..=+.....+.++++++|...|++. ..+++++||||||+-|.|.+...+
T Consensus 100 iiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~l 179 (501)
T COG3845 100 IILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179 (501)
T ss_pred hhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 00 1123456677787777778888899888888888876 678999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeCC-hHHHHHhhhcccccccccccceeEEEEEEEEE
Q 002306 757 AWAICEHLVEEIRAPTLFATHF-HELTALAHENANEFNTKQMVGVANYHVSAHID 810 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~-~el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (938)
..+++.+.+ .|+++||+||- .|..++||+ ..-++.+++.-..+
T Consensus 180 -f~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDr---------vTVLR~Gkvvgt~~ 223 (501)
T COG3845 180 -FEILRRLAA-EGKTIIFITHKLKEVMAIADR---------VTVLRRGKVVGTVD 223 (501)
T ss_pred -HHHHHHHHH-CCCEEEEEeccHHHHHHhhCe---------eEEEeCCeEEeeec
Confidence 788889987 79999999998 567789998 66666666544433
No 321
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.8e-13 Score=155.99 Aligned_cols=207 Identities=15% Similarity=0.072 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeeccCcccccCCccccCCCCeEEEEEec
Q 002306 585 IFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGP 664 (938)
Q Consensus 585 ~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGp 664 (938)
.+....+..|-.|.+.+|-.--......-.++..... ..+++. ..|--+... +++.+++|++|++.+|+.++|+||
T Consensus 280 ~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~--~~~ei~-~~~l~~~y~-~g~~~l~~l~~t~~~g~~talvG~ 355 (559)
T COG4988 280 FFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANE--PPIEIS-LENLSFRYP-DGKPALSDLNLTIKAGQLTALVGA 355 (559)
T ss_pred HHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccC--CCceee-ecceEEecC-CCCcccCCceeEecCCcEEEEECC
Confidence 3444555678888888875421110000111122211 124444 223333222 233899999999999999999999
Q ss_pred CCCCchhhhhhhhhhHhh--------------------hhccccccccccc--------c---------hHHHHHHHhcC
Q 002306 665 NMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--------I---------SVRDCIFARVG 707 (938)
Q Consensus 665 Ng~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--------~---------~~~d~i~~~~~ 707 (938)
|||||||++..+++..-. -+--++||...-- + .-......+.|
T Consensus 356 SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~ 435 (559)
T COG4988 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAG 435 (559)
T ss_pred CCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhc
Confidence 999999999998754211 0111344433210 0 11122333444
Q ss_pred Cchh----------hhhcccchHHH-HHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 708 AGDC----------QLRGVSTFMQE-MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 708 ~~d~----------~~~~~s~f~~e-~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
+.+- +..+-+.+|++ .+|++.+.....+++++|+||||+++|...-..| ...+..+.+ +.+++++|
T Consensus 436 l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i-~~~l~~l~~--~ktvl~it 512 (559)
T COG4988 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII-LQALQELAK--QKTVLVIT 512 (559)
T ss_pred HHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHH-HHHHHHHHh--CCeEEEEE
Confidence 3333 33333445554 5555656666789999999999999999776666 666666765 58999999
Q ss_pred CChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 777 HFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 777 H~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
|.++...-+|+ ...+.++.+..
T Consensus 513 Hrl~~~~~~D~---------I~vld~G~l~~ 534 (559)
T COG4988 513 HRLEDAADADR---------IVVLDNGRLVE 534 (559)
T ss_pred cChHHHhcCCE---------EEEecCCceec
Confidence 99998887877 55566666543
No 322
>PRK13409 putative ATPase RIL; Provisional
Probab=99.52 E-value=4e-14 Score=169.48 Aligned_cols=140 Identities=19% Similarity=0.165 Sum_probs=103.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccc----------------------------------c
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS----------------------------------F 688 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~----------------------------------~ 688 (938)
.|+..+++ .+.+|++++|+|||||||||+||+++++... ..|. +
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP-NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC-CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 47888888 6899999999999999999999999764211 0111 1
Q ss_pred ccccccc------------------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 002306 689 VPCDRAS------------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (938)
Q Consensus 689 vp~~~~~------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd 749 (938)
.|+.... ...++.++..+|+.+......+++|+++++...+++ .+.+|+++|||||++|||
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD 244 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 1111000 012345667788877777888899987777665555 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.....+ ..++..+.+ |.++|++||+.+.. .++++
T Consensus 245 ~~~~~~l-~~~i~~l~~--g~tvIivsHd~~~l~~~~D~ 280 (590)
T PRK13409 245 IRQRLNV-ARLIRELAE--GKYVLVVEHDLAVLDYLADN 280 (590)
T ss_pred HHHHHHH-HHHHHHHHC--CCEEEEEeCCHHHHHHhCCE
Confidence 9988888 667777764 89999999998765 45654
No 323
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.52 E-value=2.8e-14 Score=159.37 Aligned_cols=137 Identities=13% Similarity=0.078 Sum_probs=95.3
Q ss_pred EEecCCCCchhhhhhhhhhHhhh------------------hcccccccccc---cchH---------------------
Q 002306 661 ITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA---SISV--------------------- 698 (938)
Q Consensus 661 itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~---~~~~--------------------- 698 (938)
|+||||||||||||+++++.... ..-.|+|.... ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 58999999999999998653110 00123443321 1111
Q ss_pred HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 699 RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 699 ~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
++.++..+|+.+...+..+.+|+++++...+.+ .+.+|+++|||||++|+|+.....+ +.++..+.++.|.++|++||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l-~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQM-QLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeC
Confidence 234556667766666667788877777655555 4789999999999999999988888 67777776545899999999
Q ss_pred ChHH-HHHhhhcccccccccccceeEEEEEE
Q 002306 778 FHEL-TALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 778 ~~el-~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
+.+. ..++++ ...+.++++..
T Consensus 160 d~~e~~~~~d~---------i~vl~~G~i~~ 181 (325)
T TIGR01187 160 DQEEAMTMSDR---------IAIMRKGKIAQ 181 (325)
T ss_pred CHHHHHHhCCE---------EEEEECCEEEE
Confidence 9765 467887 55566666543
No 324
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.52 E-value=3.7e-14 Score=172.48 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=91.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh--c---c----ccccccc---ccch-------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--V---G----SFVPCDR---ASIS------------- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq--~---g----~~vp~~~---~~~~------------- 697 (938)
..+.++++|++.+|++++|+||||||||||||+++++..... + | .++|... ....
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~ 95 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQA 95 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHH
Confidence 356679999999999999999999999999999987532110 0 0 1122110 0000
Q ss_pred ------------------------------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCC
Q 002306 698 ------------------------------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GAT 734 (938)
Q Consensus 698 ------------------------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~ 734 (938)
.+..++..+|.. .....+++|+++++...+.+ .+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 96 EYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVS 173 (635)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhc
Confidence 011223334432 13456788887776655555 478
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 735 ~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|+++||||||+|+|+.....+ ..++. + .+.++|++||+.++. .++++
T Consensus 174 ~P~lLLLDEPt~~LD~~~~~~L-~~~L~---~-~~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 174 NPDVLLLDEPTNHLDIETIEWL-EGFLK---T-FQGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCCEEEEcCCCCccCHHHHHHH-HHHHH---h-CCCEEEEEeCCHHHHHHhcCe
Confidence 9999999999999999876665 44443 3 346899999998765 56766
No 325
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.52 E-value=3e-14 Score=149.26 Aligned_cols=143 Identities=15% Similarity=0.051 Sum_probs=109.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccccc-------ccccchHHHHHHHhcCCch-hhhhc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPC-------DRASISVRDCIFARVGAGD-CQLRG 715 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~-------~~~~~~~~d~i~~~~~~~d-~~~~~ 715 (938)
...++|+|++.+|++++|+|.+||||||+-|++..+.-....-.+.-. .......+..++..+|... .+.+.
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ry 106 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRY 106 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcC
Confidence 456799999999999999999999999999998765432111111110 1112334557788888654 56666
Q ss_pred ccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 716 VSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 716 ~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
...|+++++|...|.++ +.+|+++++|||++.+|......+ ..++..+.++.|.+.+|+|||...++ ++++
T Consensus 107 PhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqI-lnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 107 PHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI-LNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred CcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHH-HHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 77888887776666654 889999999999999999888888 78888888878999999999999886 5554
No 326
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.52 E-value=2.7e-13 Score=162.68 Aligned_cols=157 Identities=17% Similarity=0.062 Sum_probs=102.2
Q ss_pred EEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhc
Q 002306 626 IILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQV 685 (938)
Q Consensus 626 l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~ 685 (938)
+.+++..... ..+...+.++++|++++|+.++|+||||||||||++.+++..-. .+.
T Consensus 317 i~~~~v~~~y---~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 317 LSVENVTIVP---PGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred EEEEEEEEEc---CCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 6666543322 11224678999999999999999999999999999998754211 111
Q ss_pred cccccccccc--chHHHHH------------------------HHhc--CCchhhhhcccchHHHHHHH-HHHHHhCCCC
Q 002306 686 GSFVPCDRAS--ISVRDCI------------------------FARV--GAGDCQLRGVSTFMQEMLET-ASILKGATDR 736 (938)
Q Consensus 686 g~~vp~~~~~--~~~~d~i------------------------~~~~--~~~d~~~~~~s~f~~e~~~~-~~il~~a~~~ 736 (938)
-.++|++..- -++.+.+ +.++ |....+..+-..+|++++|. +.+.....+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 2345554311 0111221 1122 11222223334566665554 4444558899
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 737 slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+++||||||+|+|+.....+ ...+..+.. .++++|++||..+....+++
T Consensus 474 ~ililDEpts~LD~~~~~~i-~~~l~~~~~-~~~tvi~ith~~~~~~~~d~ 522 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQAL-ANAIKALKA-RGITVVVITHRPSLLGCVDK 522 (544)
T ss_pred CEEEEeCCccccCHHHHHHH-HHHHHHHhh-CCCEEEEEeCCHHHHHhCCE
Confidence 99999999999999988887 555555543 47899999999988777776
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.52 E-value=3.7e-14 Score=170.12 Aligned_cols=140 Identities=15% Similarity=0.089 Sum_probs=99.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------hh--ccccccccc----ccchHH----------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------AQ--VGSFVPCDR----ASISVR---------- 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------aq--~g~~vp~~~----~~~~~~---------- 699 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .. .-.|+|+.. ..+++.
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~ 416 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDII 416 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccc
Confidence 4578899999999999999999999999999999865321 10 012455432 011111
Q ss_pred ---------HHHHHhcCCch-hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q 002306 700 ---------DCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEI 768 (938)
Q Consensus 700 ---------d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~ 768 (938)
..++.++|..+ ......+++|+++++...+++ .+.+|.++||||||+|+|+.....+ +.++..+ .
T Consensus 417 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~---~ 492 (556)
T PRK11819 417 KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL-EEALLEF---P 492 (556)
T ss_pred cccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH-HHHHHhC---C
Confidence 23456667653 456667888887777655555 4789999999999999999888877 5555544 2
Q ss_pred CCeEEEEeCChHHH-HHhhh
Q 002306 769 RAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 769 ~~~~l~~TH~~el~-~~~~~ 787 (938)
+ ++|++||+.++. .+|++
T Consensus 493 ~-tvi~vtHd~~~~~~~~d~ 511 (556)
T PRK11819 493 G-CAVVISHDRWFLDRIATH 511 (556)
T ss_pred C-eEEEEECCHHHHHHhCCE
Confidence 4 799999998765 46665
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.52 E-value=3.6e-14 Score=170.18 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=99.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------h---hcccccccccc----cchH----------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A---QVGSFVPCDRA----SISV---------- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------a---q~g~~vp~~~~----~~~~---------- 698 (938)
..+.++++|++.+|++++|+||||||||||||+++++... . .+ .|+|+... ..++
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i-~~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKL-AYVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEE-EEEeCCccccCCCCcHHHHHHhhccc
Confidence 4688899999999999999999999999999999765321 1 11 24444310 1111
Q ss_pred ---------HHHHHHhcCCch-hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002306 699 ---------RDCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (938)
Q Consensus 699 ---------~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (938)
...++.++|..+ ......+++|+++++...+++ .+.+|+++||||||+|+|+.....+ ..++..+
T Consensus 414 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~--- 489 (552)
T TIGR03719 414 IQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL-EEALLEF--- 489 (552)
T ss_pred cccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHC---
Confidence 124566677653 356667888887777655555 4789999999999999999888777 5555544
Q ss_pred CCCeEEEEeCChHHH-HHhhh
Q 002306 768 IRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 768 ~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.++|++||+.++. .++++
T Consensus 490 -~~~viivsHd~~~~~~~~d~ 509 (552)
T TIGR03719 490 -AGCAVVISHDRWFLDRIATH 509 (552)
T ss_pred -CCeEEEEeCCHHHHHHhCCE
Confidence 23799999998765 46665
No 329
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.52 E-value=8.1e-14 Score=132.47 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=109.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------------------------hccccc-------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------------------------QVGSFV------- 689 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------------------------q~g~~v------- 689 (938)
-..-|++|+...|+.+++.||+|+|||||+|.+.++.... ..|...
T Consensus 16 q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwp 95 (242)
T COG4161 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWP 95 (242)
T ss_pred hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCc
Confidence 3445889998999999999999999999999986553221 111110
Q ss_pred -----------cccccc------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002306 690 -----------PCDRAS------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 690 -----------p~~~~~------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~ 751 (938)
|++-.. ......++.|+.+.+...+..-.++++.++...|.+ .+.+|.++|+||||+.+||.
T Consensus 96 hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpe 175 (242)
T COG4161 96 HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHH
Confidence 000000 011224667777777666666667777766655555 47899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-HhhhcccccccccccceeEEEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
-...+ ..+++.|.. .|.+-+++||..++++ .+.+ .--+.++|+.-.
T Consensus 176 itaqv-v~iikel~~-tgitqvivthev~va~k~as~---------vvyme~g~ive~ 222 (242)
T COG4161 176 ITAQI-VSIIKELAE-TGITQVIVTHEVEVARKTASR---------VVYMENGHIVEQ 222 (242)
T ss_pred HHHHH-HHHHHHHHh-cCceEEEEEeehhHHHhhhhh---------eEeeecCeeEee
Confidence 88887 788899987 8999999999999885 5555 445667776443
No 330
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.50 E-value=6.3e-14 Score=170.58 Aligned_cols=154 Identities=17% Similarity=0.130 Sum_probs=112.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhccccccccccc---c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRAS---I 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~~---~ 696 (938)
.+.++++|++.+|++++|+||||||||||+|+++++... .+...|+|....- .
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 467799999999999999999999999999999765311 1112344433210 1
Q ss_pred hH---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.. +..++..+|..+........+++++++...+.+ .+.+|+++|||||++|+|+....
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~ 181 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 11 123455667666666677788877766655554 47899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
.+ ..+++.+.+ .|.++|++||+.++...+++ ...+.++++...
T Consensus 182 ~l-~~ll~~l~~-~g~tilivsH~~~~~~~~d~---------i~~l~~G~i~~~ 224 (648)
T PRK10535 182 EV-MAILHQLRD-RGHTVIIVTHDPQVAAQAER---------VIEIRDGEIVRN 224 (648)
T ss_pred HH-HHHHHHHHh-cCCEEEEECCCHHHHHhCCE---------EEEEECCEEEee
Confidence 88 777777775 58999999999998887877 666777776543
No 331
>PLN03073 ABC transporter F family; Provisional
Probab=99.50 E-value=5.2e-14 Score=171.48 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=98.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------hcccccccccc-c----------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------QVGSFVPCDRA-S---------------- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------q~g~~vp~~~~-~---------------- 695 (938)
..+.++++|++..|++++|+||||||||||||+++++.... .+| |+|+... .
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~~~~l~~~~~~~~~~~~~~~ 600 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VFSQHHVDGLDLSSNPLLYMMRCFP 600 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EEeccccccCCcchhHHHHHHHhcC
Confidence 35788999999999999999999999999999998753211 122 3333210 0
Q ss_pred ---chHHHHHHHhcCCch-hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q 002306 696 ---ISVRDCIFARVGAGD-CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRA 770 (938)
Q Consensus 696 ---~~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~ 770 (938)
-..+..++.++|..+ ......+.+|+++++...+++ .+.+|.++||||||+|+|+.....+ ++.+.+ .+.
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l----~~~L~~-~~g 675 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEAL----IQGLVL-FQG 675 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH----HHHHHH-cCC
Confidence 011234566777763 456677888877777655554 4789999999999999999876665 333443 234
Q ss_pred eEEEEeCChHHH-HHhhh
Q 002306 771 PTLFATHFHELT-ALAHE 787 (938)
Q Consensus 771 ~~l~~TH~~el~-~~~~~ 787 (938)
++|++||+.++. .+|++
T Consensus 676 tvIivSHd~~~i~~~~dr 693 (718)
T PLN03073 676 GVLMVSHDEHLISGSVDE 693 (718)
T ss_pred EEEEEECCHHHHHHhCCE
Confidence 899999998765 46766
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.50 E-value=5.5e-14 Score=171.02 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=96.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------h---hcccccccccc----cchHH---------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------A---QVGSFVPCDRA----SISVR--------- 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------a---q~g~~vp~~~~----~~~~~--------- 699 (938)
..+.++++|++.+|++++|+||||||||||||++++.... . .+ .|+|+... ..++.
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i-~y~~q~~~~l~~~~tv~e~l~~~~~~ 410 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEV-AYFDQHRAELDPEKTVMDNLAEGKQE 410 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEE-EEEeCcccccCCCCCHHHHHHhhccc
Confidence 4578899999999999999999999999999999865311 1 12 23443211 11122
Q ss_pred ----------HHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002306 700 ----------DCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (938)
Q Consensus 700 ----------d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (938)
..++.+++.. +......+++|+++++...+++. +.+|.++||||||+|+|+.....+ ..++. +
T Consensus 411 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l-~~~l~---~- 485 (635)
T PRK11147 411 VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL-EELLD---S- 485 (635)
T ss_pred ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH-HHHHH---h-
Confidence 2334455553 34566677888877776655554 789999999999999999876655 33333 3
Q ss_pred CCCeEEEEeCChHHH-HHhhh
Q 002306 768 IRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 768 ~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+.++|++|||.++. .+|++
T Consensus 486 ~~~tvi~vSHd~~~~~~~~d~ 506 (635)
T PRK11147 486 YQGTVLLVSHDRQFVDNTVTE 506 (635)
T ss_pred CCCeEEEEECCHHHHHHhcCE
Confidence 356899999997765 56766
No 333
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.50 E-value=1.9e-13 Score=164.64 Aligned_cols=142 Identities=14% Similarity=0.077 Sum_probs=99.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH--------------------hhhhccccccccccc--chHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------LMAQVGSFVPCDRAS--ISVRD 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--------------------~laq~g~~vp~~~~~--~~~~d 700 (938)
..+.+|+++++++|+.++|+|+||||||||+|.+.++. -+.+.-.+||++..- -++.|
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~e 565 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRE 565 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHH
Confidence 46888999999999999999999999999999986542 112222366655411 11111
Q ss_pred ------------HHH---HhcCCchh-----------hhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q 002306 701 ------------CIF---ARVGAGDC-----------QLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 701 ------------~i~---~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~ 753 (938)
++. ..-|+.+. +..+-+.+|++++|.-.++++ ..+|+++||||||+++|+..-
T Consensus 566 Ni~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE 645 (709)
T COG2274 566 NIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETE 645 (709)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHH
Confidence 111 12233333 334456677777776555554 789999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ..-+..+. .|+|+|++||.+...+.+++
T Consensus 646 ~~I-~~~L~~~~--~~~T~I~IaHRl~ti~~adr 676 (709)
T COG2274 646 AII-LQNLLQIL--QGRTVIIIAHRLSTIRSADR 676 (709)
T ss_pred HHH-HHHHHHHh--cCCeEEEEEccchHhhhccE
Confidence 666 44444444 37999999999999988887
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.50 E-value=5.8e-14 Score=168.36 Aligned_cols=138 Identities=15% Similarity=0.033 Sum_probs=92.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------hcccccccccc---cchHHHHH---------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------QVGSFVPCDRA---SISVRDCI--------- 702 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------q~g~~vp~~~~---~~~~~d~i--------- 702 (938)
.+.++++|++.+|++++|+||||||||||||+++++.... ..-.|+|.... .+++.+.+
T Consensus 19 ~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~ 98 (552)
T TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKD 98 (552)
T ss_pred eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHH
Confidence 4667999999999999999999999999999998753211 01124554321 12222222
Q ss_pred ------------------------------------------------HHhcCCchhhhhcccchHHHHHHHHHHHH-hC
Q 002306 703 ------------------------------------------------FARVGAGDCQLRGVSTFMQEMLETASILK-GA 733 (938)
Q Consensus 703 ------------------------------------------------~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a 733 (938)
+..+|.. ......+++|+++++...+++ .+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~al~ 177 (552)
T TIGR03719 99 ALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCRLLL 177 (552)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHHHHh
Confidence 1112221 123445678877777655555 47
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 734 TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 734 ~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+|+++|||||++|+|+.....+ ..++. + .+.++|++||+.++. .++++
T Consensus 178 ~~p~lLLLDEPt~~LD~~~~~~l-~~~L~---~-~~~tvIiisHd~~~~~~~~d~ 227 (552)
T TIGR03719 178 SKPDMLLLDEPTNHLDAESVAWL-EQHLQ---E-YPGTVVAVTHDRYFLDNVAGW 227 (552)
T ss_pred cCCCEEEEcCCCCCCChHHHHHH-HHHHH---h-CCCeEEEEeCCHHHHHhhcCe
Confidence 89999999999999999877766 44433 3 346899999998765 46666
No 335
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.2e-13 Score=133.03 Aligned_cols=143 Identities=20% Similarity=0.152 Sum_probs=101.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-----------------------------hhhccccc---cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-----------------------------MAQVGSFV---PC 691 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-----------------------------laq~g~~v---p~ 691 (938)
.=..+++|+..+|++.+|+|.+||||||||++++.-.. |.---.|| |.
T Consensus 20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR 99 (258)
T ss_pred cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence 34568999999999999999999999999999853110 00000122 11
Q ss_pred cc--------ccchH----------------HHHHHHhcCC-chhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002306 692 DR--------ASISV----------------RDCIFARVGA-GDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELG 745 (938)
Q Consensus 692 ~~--------~~~~~----------------~d~i~~~~~~-~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~ 745 (938)
+. +.++- ...++.++.. .+.+.....+|+++|++...|.++ .|.|.|++|||||
T Consensus 100 DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT 179 (258)
T COG4107 100 DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179 (258)
T ss_pred ccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCC
Confidence 11 01110 1123444432 233455567999999998888776 7999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.|+|..-...+ ..++.-|..+.|..++++|||...+.+..+
T Consensus 180 GGLDVSVQARL-LDllrgLv~~l~la~viVTHDl~VarLla~ 220 (258)
T COG4107 180 GGLDVSVQARL-LDLLRGLVRELGLAVVIVTHDLAVARLLAD 220 (258)
T ss_pred CCcchhhHHHH-HHHHHHHHHhcCceEEEEechhHHHHHhhh
Confidence 99999776666 778888877789999999999999885544
No 336
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.49 E-value=6.7e-14 Score=169.52 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=112.7
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------------------hccccccccccc---ch-
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS---IS- 697 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------------q~g~~vp~~~~~---~~- 697 (938)
...+.+++++.+.+|++++|+|||||||||||+++++..... +.-.|||++..- ++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 457888999999999999999999999999999997643110 111455544311 11
Q ss_pred -----------------------HHHHHHHhcCCchhhhhcc------cchHHH-HHHHHHHHHhCCCCcEEEEeCCCCC
Q 002306 698 -----------------------VRDCIFARVGAGDCQLRGV------STFMQE-MLETASILKGATDRSLIIIDELGRG 747 (938)
Q Consensus 698 -----------------------~~d~i~~~~~~~d~~~~~~------s~f~~e-~~~~~~il~~a~~~slvllDEp~~g 747 (938)
.++.++..+|..+...... ..++++ .++++.+...+++|++++||||++|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 2445666666544322222 245644 5555556666899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh--HHHHHhhhcccccccccccceeEEEEEEEE
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHENANEFNTKQMVGVANYHVSAHI 809 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~--el~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (938)
+|+.....+ ...++.+++ .|.++|++||.+ ++.+++|+ ..-+.++++.+..
T Consensus 197 LD~~~~~~l-~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~---------i~ll~~G~~v~~G 249 (617)
T TIGR00955 197 LDSFMAYSV-VQVLKGLAQ-KGKTIICTIHQPSSELFELFDK---------IILMAEGRVAYLG 249 (617)
T ss_pred hhHHHHHHH-HHHHHHHHh-CCCEEEEEeCCCCHHHHHHhce---------EEEeeCCeEEEEC
Confidence 999999988 666777876 589999999996 56788888 6667778776654
No 337
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.49 E-value=6.1e-13 Score=161.15 Aligned_cols=142 Identities=18% Similarity=0.054 Sum_probs=97.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVRD 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~d 700 (938)
..+.++++|++.+|+.++|+||||||||||++.+++..-. .+.-+|||++..- -++.+
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~ 427 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIED 427 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHH
Confidence 4588999999999999999999999999999998754211 1223466655411 01111
Q ss_pred ---------------HHHHhcCCchh-----------hhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 701 ---------------CIFARVGAGDC-----------QLRGVSTFMQEM-LETASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 701 ---------------~i~~~~~~~d~-----------~~~~~s~f~~e~-~~~~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
..+.+.|+.+. +..+-..+|++. ++++.+...+.+|+++||||||+++|+...
T Consensus 428 Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~ 507 (588)
T PRK13657 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507 (588)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 22223333222 222223466554 555555556889999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ...+..+. .++++|++||+++..+.+|+
T Consensus 508 ~~i-~~~l~~~~--~~~tvIiitHr~~~~~~~D~ 538 (588)
T PRK13657 508 AKV-KAALDELM--KGRTTFIIAHRLSTVRNADR 538 (588)
T ss_pred HHH-HHHHHHHh--cCCEEEEEEecHHHHHhCCE
Confidence 888 44455544 37999999999988888877
No 338
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.49 E-value=1e-12 Score=153.51 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=96.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-------hhhh---ccccccccccc-----------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-------LMAQ---VGSFVPCDRAS----------------- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-------~laq---~g~~vp~~~~~----------------- 695 (938)
..+..+++|.+..|..++|+||||+|||||||.+++.. ..++ +| |+++....
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig-yf~Q~~~~l~~~~t~~d~l~~~~~~ 413 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIG-YFDQHRDELDPDKTVLEELSEGFPD 413 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEE-EEEehhhhcCccCcHHHHHHhhCcc
Confidence 47888999999999999999999999999999984422 1111 22 22322211
Q ss_pred --chHHHHHHHhcCC-chhhhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002306 696 --ISVRDCIFARVGA-GDCQLRGVSTFMQEM-LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (938)
Q Consensus 696 --~~~~d~i~~~~~~-~d~~~~~~s~f~~e~-~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (938)
...+...+.+++. .+...+...++|++. .++..+...+.+|.++||||||+.||.....++.. .|.+ ..-+
T Consensus 414 ~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~----aL~~-f~Gt 488 (530)
T COG0488 414 GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE----ALLD-FEGT 488 (530)
T ss_pred ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHH----HHHh-CCCe
Confidence 1223345666764 345566777888554 55555555678999999999999999987666633 3444 4568
Q ss_pred EEEEeCChHHHH-Hhhh
Q 002306 772 TLFATHFHELTA-LAHE 787 (938)
Q Consensus 772 ~l~~TH~~el~~-~~~~ 787 (938)
+|+||||..+.+ ++.+
T Consensus 489 vl~VSHDr~Fl~~va~~ 505 (530)
T COG0488 489 VLLVSHDRYFLDRVATR 505 (530)
T ss_pred EEEEeCCHHHHHhhcce
Confidence 999999988764 5544
No 339
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.49 E-value=1.2e-13 Score=165.55 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=105.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc-------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS------- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~------- 695 (938)
.++.++++|++++|+.++|+||||||||||++.+++..-. .+.-.++|++..-
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 415 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGP 415 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhcc
Confidence 4678899999999999999999999999999998754211 1112345544311
Q ss_pred ------chHHHHHHHhcCCchhhhhc-----ccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002306 696 ------ISVRDCIFARVGAGDCQLRG-----VSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (938)
Q Consensus 696 ------~~~~d~i~~~~~~~d~~~~~-----~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (938)
-..+..++.+++..+....+ -..+|++++|. +.+...+.+|+++||||||+|+|+.....+...+.+.
T Consensus 416 n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~ 495 (547)
T PRK10522 416 EGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPL 495 (547)
T ss_pred ccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 01122345566655443221 13566655554 4444558999999999999999999888885555544
Q ss_pred HHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 764 LVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 764 l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+.. .++++|++||..+....+++ ...+.++++.
T Consensus 496 ~~~-~~~tvi~itH~~~~~~~~d~---------i~~l~~G~i~ 528 (547)
T PRK10522 496 LQE-MGKTIFAISHDDHYFIHADR---------LLEMRNGQLS 528 (547)
T ss_pred HHh-CCCEEEEEEechHHHHhCCE---------EEEEECCEEE
Confidence 443 47999999999988888877 5556665553
No 340
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.48 E-value=1.4e-13 Score=160.71 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=93.6
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------hc---cccccccccc---chH-----------
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------QV---GSFVPCDRAS---ISV----------- 698 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------q~---g~~vp~~~~~---~~~----------- 698 (938)
...+.++++|.+.+|+.++|+|+||+|||||||++++..... .- -.++++.... .++
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~ 94 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGEL 94 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHH
Confidence 345667999999999999999999999999999997543110 00 0122222110 011
Q ss_pred ----------------------------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCc
Q 002306 699 ----------------------------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRS 737 (938)
Q Consensus 699 ----------------------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~s 737 (938)
...++..+|..+. ....+++|++.+....+.+. ..+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pD 173 (530)
T COG0488 95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPD 173 (530)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 1123444555544 66778899877766555554 78999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 738 LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 738 lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++||||||+.||... |.| +-++|.+..| ++|++|||-.+. .+|.+
T Consensus 174 lLLLDEPTNHLD~~~---i~W-Le~~L~~~~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 174 LLLLDEPTNHLDLES---IEW-LEDYLKRYPG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred EEEEcCCCcccCHHH---HHH-HHHHHHhCCC-cEEEEeCCHHHHHHHhhh
Confidence 999999999998753 322 3455655445 999999997665 46665
No 341
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.48 E-value=2.8e-13 Score=145.28 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=65.4
Q ss_pred HHHhcCCch-hhhhcccchHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 702 IFARVGAGD-CQLRGVSTFMQEMLETASILKG-AT---DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 702 i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~---~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
++.++|+.+ .+....+++|+++++...+.+. +. +|+++|||||++|+|+.+...+ ..+++.+.+ .|.++|++|
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l-~~~L~~l~~-~g~tvIiit 229 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKL-LEVLQRLVD-KGNTVVVIE 229 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEe
Confidence 344567765 4667778888887776666554 33 3799999999999999999888 677777776 589999999
Q ss_pred CChHHHHHhhh
Q 002306 777 HFHELTALAHE 787 (938)
Q Consensus 777 H~~el~~~~~~ 787 (938)
|++++...+++
T Consensus 230 H~~~~i~~aD~ 240 (261)
T cd03271 230 HNLDVIKCADW 240 (261)
T ss_pred CCHHHHHhCCE
Confidence 99988776665
No 342
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=6.8e-13 Score=149.08 Aligned_cols=153 Identities=18% Similarity=0.115 Sum_probs=113.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh-------------------Hhhhhcccccccccccc-------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN-------------------ILMAQVGSFVPCDRASI------- 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~-------------------~~laq~g~~vp~~~~~~------- 696 (938)
+.|.++++|++++|+-++|+|+|||||||+||++... .-+.+.-++||++..-+
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N 444 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN 444 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence 4588899999999999999999999999999997432 12345667889876311
Q ss_pred ----------hHHHHHHHhcCCchhhhh---cccch--------H-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002306 697 ----------SVRDCIFARVGAGDCQLR---GVSTF--------M-QEMLETASILKGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ----------~~~d~i~~~~~~~d~~~~---~~s~f--------~-~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.-+-++..+.|..|.+.+ |.+|. | +|+++++.+.+...++.++++||||+.+|...-.
T Consensus 445 I~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~ 524 (591)
T KOG0057|consen 445 IKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETER 524 (591)
T ss_pred hhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHH
Confidence 112234455666654433 33332 2 5667777766678999999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.+...+.. .. .+.|+|++-|++.+..-+|. ...+.|+.+..
T Consensus 525 ~i~~~i~~-~~--~~rTvI~IvH~l~ll~~~Dk---------I~~l~nG~v~e 565 (591)
T KOG0057|consen 525 EILDMIMD-VM--SGRTVIMIVHRLDLLKDFDK---------IIVLDNGTVKE 565 (591)
T ss_pred HHHHHHHH-hc--CCCeEEEEEecchhHhcCCE---------EEEEECCeeEE
Confidence 88666655 22 58999999999999998888 77777777654
No 343
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.48 E-value=1.1e-13 Score=158.65 Aligned_cols=143 Identities=18% Similarity=0.091 Sum_probs=106.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-------------------------hccccccccc-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------------QVGSFVPCDR----- 693 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-------------------------q~g~~vp~~~----- 693 (938)
...++++|++.+|++++|+|++||||||+.|+++++.-.. |+++--|-.+
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc
Confidence 4467999999999999999999999999999997654221 1111001000
Q ss_pred ------------------c-cchHHHHHHHhcCCchh-hhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 694 ------------------A-SISVRDCIFARVGAGDC-QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 694 ------------------~-~~~~~d~i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
+ .-..++.++.++|+..+ +.+....||+++++...|.+ .+.+|.++|+|||++.+|+..
T Consensus 385 tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 385 TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 0 01124566888887764 66667788877766655554 589999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
...+ ..++..+.++.|.+.||+|||+.+.+ +|++
T Consensus 465 qa~V-lnLl~~lq~e~g~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 465 QAQV-LNLLKDLQEELGLTYLFISHDLAVVRYIADR 499 (539)
T ss_pred HHHH-HHHHHHHHHHhCCEEEEEeCCHHHHHhhCce
Confidence 8888 66667777778999999999998875 7776
No 344
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.48 E-value=8.2e-13 Score=160.21 Aligned_cols=142 Identities=13% Similarity=0.033 Sum_probs=98.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccccc--hH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~~--~~-- 698 (938)
..+.++++|++++|+.++|+||||||||||++.+++..-. .+.-++||++..-+ ++
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~ 433 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLA 433 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHH
Confidence 4588899999999999999999999999999998754211 12234666654211 11
Q ss_pred ------------HHHHHHhcCCchhhh-----------hcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002306 699 ------------RDCIFARVGAGDCQL-----------RGVSTFMQEM-LETASILKGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 699 ------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~-~~~~~il~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+.+.....|+.+.+. .+-..+|+++ ++++.+.+.+.+|+++||||||+++|+....
T Consensus 434 NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~ 513 (592)
T PRK10790 434 NVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513 (592)
T ss_pred HHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 122334444443322 1223466555 4555555558899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ...+..+.+ ++++|++||.++....+|+
T Consensus 514 ~i-~~~l~~~~~--~~tvIivtHr~~~l~~~D~ 543 (592)
T PRK10790 514 AI-QQALAAVRE--HTTLVVIAHRLSTIVEADT 543 (592)
T ss_pred HH-HHHHHHHhC--CCEEEEEecchHHHHhCCE
Confidence 77 444455543 6999999999988777776
No 345
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.48 E-value=7.2e-13 Score=160.36 Aligned_cols=142 Identities=17% Similarity=0.036 Sum_probs=97.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------------------hccccccccccc--chH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRAS--ISV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------------q~g~~vp~~~~~--~~~-- 698 (938)
..+.++++|++++|+.++|+||||||||||+|.+++..-.. +.-+|+|++..- -++
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVME 432 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHH
Confidence 46888999999999999999999999999999987643111 122456655311 011
Q ss_pred -------------HHHHHHhcCCch-----------hhhhcccchHHH-HHHHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 699 -------------RDCIFARVGAGD-----------CQLRGVSTFMQE-MLETASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 699 -------------~d~i~~~~~~~d-----------~~~~~~s~f~~e-~~~~~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
+...+...|+.+ .+..+...+|++ .++++.+.+.+.+|+++|+||||+++|+...
T Consensus 433 Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 433 NIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE 512 (576)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHH
Confidence 112222233222 222333456655 4555555555789999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ...+..+. .++++|++||+.+....+++
T Consensus 513 ~~i-~~~l~~~~--~~~t~IiitH~~~~~~~~d~ 543 (576)
T TIGR02204 513 QLV-QQALETLM--KGRTTLIIAHRLATVLKADR 543 (576)
T ss_pred HHH-HHHHHHHh--CCCEEEEEecchHHHHhCCE
Confidence 776 55556554 37999999999988887777
No 346
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.47 E-value=1.2e-13 Score=168.35 Aligned_cols=140 Identities=15% Similarity=0.065 Sum_probs=97.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh---------ccccccccccc--ch--------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---------VGSFVPCDRAS--IS-------------- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq---------~g~~vp~~~~~--~~-------------- 697 (938)
..+.++++|++.+|++++|+||||||||||+|+++++.-... .-.|+|++..- -+
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 544 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM 544 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhh
Confidence 367889999999999999999999999999999987532111 11355544210 01
Q ss_pred --------HHHHHHHhcCCchhhhhc---------ccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 698 --------VRDCIFARVGAGDCQLRG---------VSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 698 --------~~d~i~~~~~~~d~~~~~---------~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
.+..++..+++.+.+... ...+|++++|...+++ .+.+|+++||||||+|+|+.....+ .
T Consensus 545 ~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l-~- 622 (659)
T TIGR00954 545 KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYM-Y- 622 (659)
T ss_pred hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH-H-
Confidence 122445556665544332 2467776666555544 4789999999999999999866555 3
Q ss_pred HHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.+.+ .|+++|++||+.++...+++
T Consensus 623 --~~l~~-~~~tvI~isH~~~~~~~~d~ 647 (659)
T TIGR00954 623 --RLCRE-FGITLFSVSHRKSLWKYHEY 647 (659)
T ss_pred --HHHHH-cCCEEEEEeCchHHHHhCCE
Confidence 33444 48999999999998777765
No 347
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.47 E-value=7.4e-13 Score=160.11 Aligned_cols=142 Identities=16% Similarity=0.020 Sum_probs=98.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc-------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS------- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~------- 695 (938)
.++.++++|.+++|+.++|+||||||||||+|.+++..-. .+.-+|+|++..-
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 424 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIAN 424 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHH
Confidence 4688899999999999999999999999999998754211 1122456655311
Q ss_pred -----------chHHHHHHHhcCCchhh-----------hhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhh
Q 002306 696 -----------ISVRDCIFARVGAGDCQ-----------LRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 696 -----------~~~~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~~ 752 (938)
-..+...+...|+.+.+ ..+-..+|++.+| ++.+...+.+|+++||||||+++|+..
T Consensus 425 Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 425 NIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred HHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 01112233344443322 2222346655554 455555689999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+ ...+..+. .++++|++||+..+...+|+
T Consensus 505 ~~~i-~~~L~~~~--~~~tiIiitH~~~~~~~~D~ 536 (571)
T TIGR02203 505 ERLV-QAALERLM--QGRTTLVIAHRLSTIEKADR 536 (571)
T ss_pred HHHH-HHHHHHHh--CCCEEEEEehhhHHHHhCCE
Confidence 8888 55555554 37999999999998888887
No 348
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.47 E-value=1e-12 Score=158.65 Aligned_cols=142 Identities=15% Similarity=0.018 Sum_probs=95.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc--cchHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA--SISVRD 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~--~~~~~d 700 (938)
..+.++++|++++|+.++|+||||||||||++.+++..-. .+.-+++|++.. .-++.+
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 427 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRE 427 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHH
Confidence 3578899999999999999999999999999998754211 112235554431 111111
Q ss_pred HH---------------HHhcCCch-----------hhhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 701 CI---------------FARVGAGD-----------CQLRGVSTFMQEML-ETASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 701 ~i---------------~~~~~~~d-----------~~~~~~s~f~~e~~-~~~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
.+ ....++.+ .+..+...+|++++ +++.+...+.+|+++||||||+|+|+...
T Consensus 428 Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~ 507 (585)
T TIGR01192 428 NIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507 (585)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 11 11122222 12222334565554 45555556899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ...++.+. .+.++|++||+.+....+++
T Consensus 508 ~~i-~~~l~~~~--~~~tvI~isH~~~~~~~~d~ 538 (585)
T TIGR01192 508 ARV-KNAIDALR--KNRTTFIIAHRLSTVRNADL 538 (585)
T ss_pred HHH-HHHHHHHh--CCCEEEEEEcChHHHHcCCE
Confidence 888 55556554 37999999999988777766
No 349
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.47 E-value=1.1e-12 Score=161.84 Aligned_cols=142 Identities=13% Similarity=0.046 Sum_probs=98.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc--chHH-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS--ISVR- 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~- 699 (938)
.++.++++|++++|+.++|+||||||||||+|.+++..- +.+.-.+||++..- -++.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~e 557 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHH
Confidence 468899999999999999999999999999999875421 11122456655311 0111
Q ss_pred --------------HHHHHhcCCchhh-----------hhcccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 700 --------------DCIFARVGAGDCQ-----------LRGVSTFMQEMLETAS-ILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 700 --------------d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~-il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
...+...|+.+.+ ..+-..+|++++|... +.+...+|+++||||||+++|+...
T Consensus 558 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te 637 (694)
T TIGR03375 558 NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSE 637 (694)
T ss_pred HHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 1223333333322 2222456666655544 4445889999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ...+..+.+ ++|+|++||.++....+|+
T Consensus 638 ~~i-~~~l~~~~~--~~T~iiItHrl~~~~~~D~ 668 (694)
T TIGR03375 638 ERF-KDRLKRWLA--GKTLVLVTHRTSLLDLVDR 668 (694)
T ss_pred HHH-HHHHHHHhC--CCEEEEEecCHHHHHhCCE
Confidence 888 444555543 7999999999998888877
No 350
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.46 E-value=1.6e-12 Score=156.56 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=95.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccccc--hHH-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRASI--SVR- 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~~--~~~- 699 (938)
.++.++++|++++|+.++|+||||||||||++.+++..-. .+.-.++|++..-+ ++.
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 407 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHH
Confidence 4688899999999999999999999999999998754211 11123455443110 111
Q ss_pred --------------HHHHHhcCCchhh-----------hhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 700 --------------DCIFARVGAGDCQ-----------LRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 700 --------------d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
...+...++.+.+ ..+...+|+++++. +.+...+.+|+++||||||+|+|+...
T Consensus 408 Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~ 487 (569)
T PRK10789 408 NIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE 487 (569)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 1222333333222 12223466555554 445555899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ...+..+. .++++|++||+.+....+++
T Consensus 488 ~~i-~~~l~~~~--~~~tii~itH~~~~~~~~d~ 518 (569)
T PRK10789 488 HQI-LHNLRQWG--EGRTVIISAHRLSALTEASE 518 (569)
T ss_pred HHH-HHHHHHHh--CCCEEEEEecchhHHHcCCE
Confidence 888 44555554 37999999999987776666
No 351
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=171.98 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=120.2
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH----------------------hhhhcccccccccccc------
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI----------------------LMAQVGSFVPCDRASI------ 696 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~----------------------~laq~g~~vp~~~~~~------ 696 (938)
.-+++++.+++|++.++.|||||||||+++++.+.. ...++| |.|+..+-.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCchhhhhhhccHH
Confidence 456899999999999999999999999999875432 122233 666653210
Q ss_pred ------------------hHHHHHHHhcCCchhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 697 ------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 697 ------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
..+++++..+|..+......+++++++++. ..+++....|++|+||||++|+||..+..+
T Consensus 659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~l- 737 (885)
T KOG0059|consen 659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHL- 737 (885)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH-
Confidence 113455666777777777788888887764 556666889999999999999999877777
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHHH-HhhhcccccccccccceeEEEEEEEEE
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVSAHID 810 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (938)
|.++..+.+ .|..+|++||++|.++ +|++ ..-+.++++.+...
T Consensus 738 W~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR---------~aImv~G~l~ciGs 781 (885)
T KOG0059|consen 738 WDIIARLRK-NGKAIILTSHSMEEAEALCTR---------TAIMVIGQLRCIGS 781 (885)
T ss_pred HHHHHHHHh-cCCEEEEEcCCHHHHHHHhhh---------hheeecCeeEEecC
Confidence 999999987 4559999999998885 8998 78888898888643
No 352
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.46 E-value=1.7e-13 Score=166.13 Aligned_cols=141 Identities=14% Similarity=0.024 Sum_probs=96.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh--------------------ccccccccccc--chHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------------------VGSFVPCDRAS--ISVRD 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq--------------------~g~~vp~~~~~--~~~~d 700 (938)
..+.++++|++++|+.++|+||+||||||+++.+++.. ..+ .-++||++..- -++.+
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~e 441 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRD 441 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHH
Confidence 46889999999999999999999999999999997654 211 12356655311 11111
Q ss_pred ---------------HHHHhcCCch-----------hhhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 701 ---------------CIFARVGAGD-----------CQLRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 701 ---------------~i~~~~~~~d-----------~~~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
..+...++.+ .+..+-..+|++++| ++.+.+.+.+|+++||||||+++|+...
T Consensus 442 NI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te 521 (588)
T PRK11174 442 NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSE 521 (588)
T ss_pred HhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 1222222222 222222346655555 4555555889999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+. ..+..+. .+.|+|++||.++....+|+
T Consensus 522 ~~i~-~~l~~~~--~~~TvIiItHrl~~i~~aD~ 552 (588)
T PRK11174 522 QLVM-QALNAAS--RRQTTLMVTHQLEDLAQWDQ 552 (588)
T ss_pred HHHH-HHHHHHh--CCCEEEEEecChHHHHhCCE
Confidence 8884 4445554 37899999999988877776
No 353
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=129.68 Aligned_cols=138 Identities=16% Similarity=0.151 Sum_probs=101.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-------------------h---hhhcccc-------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-------------------L---MAQVGSF------------- 688 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-------------------~---laq~g~~------------- 688 (938)
...-++++++.+|+++.|+||+||||||||--+++.. + -.|+|..
T Consensus 16 cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg 95 (213)
T COG4136 16 CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVG 95 (213)
T ss_pred eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccc
Confidence 3334788999999999999999999999999775421 0 0123321
Q ss_pred ------cccc---cccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 689 ------VPCD---RASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 689 ------vp~~---~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
+|+. .++-...+..++++|...-..+...+++++++....+++ ....|.+++||||++.+|..-+.....
T Consensus 96 ~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~ 175 (213)
T COG4136 96 QNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQ 175 (213)
T ss_pred cceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHH
Confidence 1111 122334556778888887777788888887766555554 468999999999999999988888877
Q ss_pred HHHHHHHhcCCCeEEEEeCChHHH
Q 002306 759 AICEHLVEEIRAPTLFATHFHELT 782 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el~ 782 (938)
-+...+.. .|.+++.+|||++-+
T Consensus 176 wVFs~~r~-agiPtv~VTHD~~Dv 198 (213)
T COG4136 176 WVFSEVRA-AGIPTVQVTHDLQDV 198 (213)
T ss_pred HHHHHHHh-cCCCeEEEecccccC
Confidence 77777776 799999999998644
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=99.46 E-value=2.5e-13 Score=165.50 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=92.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--hhhcc--ccccccc--cc---------------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--MAQVG--SFVPCDR--AS--------------------- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--laq~g--~~vp~~~--~~--------------------- 695 (938)
..+.++++|++..|+.++|+||||||||||||++++..+ ...-| .++++.. ..
T Consensus 190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~ 269 (718)
T PLN03073 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEE 269 (718)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 457889999999999999999999999999999975321 00000 0111100 00
Q ss_pred ch---------------------------------------------------HHHHHHHhcCCc-hhhhhcccchHHHH
Q 002306 696 IS---------------------------------------------------VRDCIFARVGAG-DCQLRGVSTFMQEM 723 (938)
Q Consensus 696 ~~---------------------------------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~ 723 (938)
++ .+..++..+|.. +......+++|+++
T Consensus 270 ~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~ 349 (718)
T PLN03073 270 AQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGW 349 (718)
T ss_pred HHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHH
Confidence 00 011223334432 22345567888888
Q ss_pred HHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 724 LETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 724 ~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++...+++. +.+|+++||||||+|+|+.....+ .. .+.+ .+.++|++||+.++. .+|++
T Consensus 350 k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l-~~---~L~~-~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 350 RMRIALARALFIEPDLLLLDEPTNHLDLHAVLWL-ET---YLLK-WPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-HH---HHHH-cCCEEEEEECCHHHHHHhCCE
Confidence 777666654 789999999999999999876655 33 3443 478999999997765 56776
No 355
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.46 E-value=1.4e-13 Score=153.86 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=113.0
Q ss_pred ccceEeecc------CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccc---------------
Q 002306 632 RHPCVEAQD------WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVP--------------- 690 (938)
Q Consensus 632 rhp~~~~~~------~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp--------------- 690 (938)
-||++-..+ ++..+.++++|.++.++.++++||||+||||+||.+.+.. ....|...|
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHh
Confidence 377765432 1225788899999999999999999999999999975421 112222211
Q ss_pred --------------cc--cccchHHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 691 --------------CD--RASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 691 --------------~~--~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
+- ..+...+..++.|+|.. |......+++|.+++....... ....|.|+||||||+|+|...
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~t 544 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET 544 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchh
Confidence 11 12344556788999976 7777888999987776554444 478999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHV 805 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~ 805 (938)
-.+++. .+.+ ..-+++++|||.-+. +++++ .+.+.++.+
T Consensus 545 id~lae----aiNe-~~Ggvv~vSHDfrlI~qVaeE---------i~~c~~~~~ 584 (614)
T KOG0927|consen 545 IDALAE----AINE-FPGGVVLVSHDFRLISQVAEE---------IWVCENGTV 584 (614)
T ss_pred HHHHHH----HHhc-cCCceeeeechhhHHHHHHHH---------hHhhccCce
Confidence 666644 3444 456799999997665 57777 777777654
No 356
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.46 E-value=3e-13 Score=163.03 Aligned_cols=142 Identities=14% Similarity=0.020 Sum_probs=100.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc--ch---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS--IS--- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~--~~--- 697 (938)
..+.++++|++++|+.++|+||||||||||++.+++..- +.+.-++||++..- -+
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 432 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRD 432 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHH
Confidence 468889999999999999999999999999999875421 11122356655311 01
Q ss_pred ------------HHHHHHHhcCCchhhhh----------cccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002306 698 ------------VRDCIFARVGAGDCQLR----------GVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 698 ------------~~d~i~~~~~~~d~~~~----------~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.+...+...++.+.+.. +-..+|++++|. +.+...+.+|+++||||||+++|+....
T Consensus 433 Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~ 512 (574)
T PRK11160 433 NLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512 (574)
T ss_pred HhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 12234455566554443 334566555554 4444558899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ...+..+. .++++|++||.++....+|+
T Consensus 513 ~i-~~~l~~~~--~~~tviiitHr~~~~~~~d~ 542 (574)
T PRK11160 513 QI-LELLAEHA--QNKTVLMITHRLTGLEQFDR 542 (574)
T ss_pred HH-HHHHHHHc--CCCEEEEEecChhHHHhCCE
Confidence 87 44455554 37899999999988777776
No 357
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.45 E-value=2.6e-13 Score=164.36 Aligned_cols=142 Identities=14% Similarity=-0.008 Sum_probs=96.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISVRD 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~d 700 (938)
..+.++++|++++|+.++|+||||||||||++.++++.-. .+.-+|+|++..- -++.+
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 435 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIAN 435 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHH
Confidence 4688999999999999999999999999999999764211 1222466655311 11111
Q ss_pred ----------------HHHHhcCCchhh-----------hhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhh
Q 002306 701 ----------------CIFARVGAGDCQ-----------LRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 701 ----------------~i~~~~~~~d~~-----------~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~~ 752 (938)
..+...|+.+.+ ..+-..+|++++| ++.+...+.+|+++||||||+++|+..
T Consensus 436 Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 436 NIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred HHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 122222322211 1112346665555 454445588999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+. ..+..+. .++|+|++||..+....+|+
T Consensus 516 ~~~i~-~~l~~~~--~~~tvI~VtHr~~~~~~~D~ 547 (582)
T PRK11176 516 ERAIQ-AALDELQ--KNRTSLVIAHRLSTIEKADE 547 (582)
T ss_pred HHHHH-HHHHHHh--CCCEEEEEecchHHHHhCCE
Confidence 88874 4444454 37999999999998888887
No 358
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.45 E-value=1.2e-12 Score=161.39 Aligned_cols=142 Identities=13% Similarity=0.002 Sum_probs=97.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~-- 698 (938)
..+.++++|.+++|+.++|+||||||||||+|.+++..-. .+.-++||++..- -++
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~e 549 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD 549 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHH
Confidence 4688899999999999999999999999999999764211 1122456655311 011
Q ss_pred -------------HHHHHHhcCCchh-----------hhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 699 -------------RDCIFARVGAGDC-----------QLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 699 -------------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
+...+...|+.+. +..+-..+|++++|. +.+...+.+|+++||||||+|+|+...
T Consensus 550 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~ 629 (694)
T TIGR01846 550 NIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629 (694)
T ss_pred HHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 1122233333322 223334566666555 444445889999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ...+..+. .++++|++||..+....+++
T Consensus 630 ~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~ 660 (694)
T TIGR01846 630 ALI-MRNMREIC--RGRTVIIIAHRLSTVRACDR 660 (694)
T ss_pred HHH-HHHHHHHh--CCCEEEEEeCChHHHHhCCE
Confidence 888 44455554 47999999999988877777
No 359
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.45 E-value=1.3e-12 Score=161.10 Aligned_cols=150 Identities=15% Similarity=0.067 Sum_probs=101.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhcccccccccccc--hH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRASI--SV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~~--~~-- 698 (938)
.++.++++|++++|+.++|+||||||||||+|.++++.- +.+.-++||++..-+ ++
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 545 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHH
Confidence 478899999999999999999999999999999875421 112234566554210 11
Q ss_pred ------------HHHHHHhcCCchhhh-----------hcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002306 699 ------------RDCIFARVGAGDCQL-----------RGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 699 ------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+.+.....|+.+.+. .+-+.+|++++|. +.+.+...+|+++||||||+++|+....
T Consensus 546 Ni~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~ 625 (686)
T TIGR03797 546 NIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625 (686)
T ss_pred HHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 122333344443322 2224566655554 4444558999999999999999998777
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.+... +.+ .++|+|++||.++....+|+ .-.+.++++.
T Consensus 626 ~i~~~----L~~-~~~T~IiItHr~~~i~~~D~---------Iivl~~G~iv 663 (686)
T TIGR03797 626 IVSES----LER-LKVTRIVIAHRLSTIRNADR---------IYVLDAGRVV 663 (686)
T ss_pred HHHHH----HHH-hCCeEEEEecChHHHHcCCE---------EEEEECCEEE
Confidence 76333 333 36899999999988888877 5555555543
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.45 E-value=2.7e-13 Score=176.16 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=107.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cch----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SIS---- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~~---- 697 (938)
.+.+++++.+.+|++++|+|||||||||||+++++..-. ...-.||++... .++
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 588999999999999999999999999999999764210 011134443321 011
Q ss_pred --------------------HHHHHHHhcCCchhhhhc-----ccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChh
Q 002306 698 --------------------VRDCIFARVGAGDCQLRG-----VSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 698 --------------------~~d~i~~~~~~~d~~~~~-----~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~ 751 (938)
.++.++..+|+.+..... ...+|+++++...|. ..+++|++++|||||+|||+.
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~ 1053 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 133455566655433222 145776666655544 458999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChH--HHHHhhhcccccccccccceeE-EEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHE--LTALAHENANEFNTKQMVGVAN-YHVSAH 808 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~e--l~~~~~~~~~~~~~~~~~~v~~-~~~~~~ 808 (938)
....+ ..+++.+++ .|.++|++||+++ +.+.+++ .-.+.+ +++.+.
T Consensus 1054 ~a~~v-~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~---------vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1054 AAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDE---------LLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHH-HHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCE---------EEEEcCCCEEEEE
Confidence 88888 777788877 5899999999975 4577776 555554 565544
No 361
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.45 E-value=4.1e-13 Score=161.23 Aligned_cols=152 Identities=17% Similarity=0.113 Sum_probs=104.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA--------- 694 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~--------- 694 (938)
++.++++|++++|++++|+|||||||||+++.+++..-. ...-.+||++..
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 688999999999999999999999999999998753211 011124443321
Q ss_pred -----cchHHHHHHHhcCCchhhh---hcc---cchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q 002306 695 -----SISVRDCIFARVGAGDCQL---RGV---STFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICE 762 (938)
Q Consensus 695 -----~~~~~d~i~~~~~~~d~~~---~~~---s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~ 762 (938)
.-..+...+...+..+.+. .|. ..+|++++|. +.+...+.+|+++||||||+++|+.....+...+++
T Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~ 515 (555)
T TIGR01194 436 EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515 (555)
T ss_pred cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 0011223455566555432 222 4566655554 545555889999999999999999988888556666
Q ss_pred HHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEE
Q 002306 763 HLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805 (938)
Q Consensus 763 ~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~ 805 (938)
.+.. .+.++|++||+.+..+.+|+ ...+.++++
T Consensus 516 ~~~~-~~~tiiiisH~~~~~~~~d~---------i~~l~~G~i 548 (555)
T TIGR01194 516 DLKR-QGKTIIIISHDDQYFELADQ---------IIKLAAGCI 548 (555)
T ss_pred HHHh-CCCEEEEEeccHHHHHhCCE---------EEEEECCEE
Confidence 5544 58999999999988777877 555555554
No 362
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=4.5e-13 Score=133.90 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=96.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-----------------cccc---ccccc-----ccch
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----------------VGSF---VPCDR-----ASIS 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-----------------~g~~---vp~~~-----~~~~ 697 (938)
+.+.+++++++..|+++.|+|.|||||||+++.+++-..+.. -+.+ |.++. ..++
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 578899999999999999999999999999999975432110 0000 00000 0111
Q ss_pred HH---------------------------HHHHHh--cCCchhhhhcccchHHHHHHHH-HHHHhCCCCcEEEEeCCCCC
Q 002306 698 VR---------------------------DCIFAR--VGAGDCQLRGVSTFMQEMLETA-SILKGATDRSLIIIDELGRG 747 (938)
Q Consensus 698 ~~---------------------------d~i~~~--~~~~d~~~~~~s~f~~e~~~~~-~il~~a~~~slvllDEp~~g 747 (938)
+. ..-+++ .|....+......||++++|.. .+++.+.+|.+++|||=|+.
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA 178 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence 11 111222 2355556666677887777764 45555889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~ 782 (938)
+||.....+ ...-+.+.++.+.|++++||+++-+
T Consensus 179 LDPkta~~v-m~lT~kiV~~~klTtlMVTHnm~~A 212 (263)
T COG1101 179 LDPKTAEFV-MELTAKIVEEHKLTTLMVTHNMEDA 212 (263)
T ss_pred CCcchHHHH-HHHHHHHHHhcCCceEEEeccHHHH
Confidence 999988887 5555555555899999999998765
No 363
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.44 E-value=2.5e-13 Score=142.20 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=55.4
Q ss_pred hhhcccchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhh
Q 002306 712 QLRGVSTFMQEMLETASILKGA-----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (938)
Q Consensus 712 ~~~~~s~f~~e~~~~~~il~~a-----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~ 786 (938)
.....+.++.++++...+.+.. .+|+++++|||++|+|+.....+ +.++..+.+ +.+++++||++++..+++
T Consensus 121 ~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l-~~~l~~~~~--~~~~iivs~~~~~~~~~d 197 (212)
T cd03274 121 SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV-ANYIKERTK--NAQFIVISLRNNMFELAD 197 (212)
T ss_pred cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH-HHHHHHHcC--CCEEEEEECcHHHHHhCC
Confidence 3334456677777765555532 35799999999999999888877 777777753 678999999998888887
Q ss_pred h
Q 002306 787 E 787 (938)
Q Consensus 787 ~ 787 (938)
+
T Consensus 198 ~ 198 (212)
T cd03274 198 R 198 (212)
T ss_pred E
Confidence 6
No 364
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.42 E-value=4.6e-13 Score=140.67 Aligned_cols=137 Identities=17% Similarity=0.050 Sum_probs=85.8
Q ss_pred CCccccCC-CCeEEEEEecCCCCchhhhhhhhhhHhh-----------hh----------cccccccccc--------cc
Q 002306 647 NDCKLIRG-KSWFQIITGPNMGGKSTFIRQVGVNILM-----------AQ----------VGSFVPCDRA--------SI 696 (938)
Q Consensus 647 n~~~l~~~-~~~~~~itGpNg~GKSTllr~i~~~~~l-----------aq----------~g~~vp~~~~--------~~ 696 (938)
+++.|... +|++++|+|||||||||+|++|....+- .. ++........ .+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 45566433 4789999999999999999998632110 00 0000000000 01
Q ss_pred hH--HHH-HHHhcC-CchhhhhcccchHHHHHHHHHHHHh-C----------CCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002306 697 SV--RDC-IFARVG-AGDCQLRGVSTFMQEMLETASILKG-A----------TDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (938)
Q Consensus 697 ~~--~d~-i~~~~~-~~d~~~~~~s~f~~e~~~~~~il~~-a----------~~~slvllDEp~~gtd~~~~~~i~~~il 761 (938)
.. +.+ +....+ ..+.+.....++++++++...+.+. + .+|+++|+|||++|+|+.....+ ..++
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~-~~~l 176 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAV-ATAL 176 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHH-HHHH
Confidence 10 111 111222 3444556667788777766555443 2 25789999999999999888887 6667
Q ss_pred HHHHhcCCCeEEEEeCChHHHHHh
Q 002306 762 EHLVEEIRAPTLFATHFHELTALA 785 (938)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~el~~~~ 785 (938)
+.+.+ .+.++|++||++++....
T Consensus 177 ~~~~~-~~~tii~itH~~~~~~~~ 199 (213)
T cd03279 177 ELIRT-ENRMVGVISHVEELKERI 199 (213)
T ss_pred HHHHh-CCCEEEEEECchHHHHhh
Confidence 77765 488999999998876533
No 365
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.2e-13 Score=147.93 Aligned_cols=154 Identities=17% Similarity=0.042 Sum_probs=106.1
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------------------hccccccccc--------
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDR-------- 693 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------------q~g~~vp~~~-------- 693 (938)
...+.++++|++.+|+.++|+|++||||||++..++...-.. +.-++++++.
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr 429 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLR 429 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHH
Confidence 457999999999999999999999999999999987522111 1112233221
Q ss_pred ---------ccchHHHHHHHhcCCchhhh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhh
Q 002306 694 ---------ASISVRDCIFARVGAGDCQL-----------RGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 694 ---------~~~~~~d~i~~~~~~~d~~~-----------~~~s~f~-~e~~~~~~il~~a~~~slvllDEp~~gtd~~~ 752 (938)
+.-.-+-.++..+|..+-+. .+-..|| +|.++++.+.....+.+++||||||-|+|+..
T Consensus 430 ~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T 509 (573)
T COG4987 430 DNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509 (573)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence 00011123445555443322 2223455 55666666666678899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
-..+...+.+++. |.++|++||..--.+.+|+ +..+.+++...
T Consensus 510 E~~vL~ll~~~~~---~kTll~vTHrL~~le~~dr---------Iivl~~Gkiie 552 (573)
T COG4987 510 ERQVLALLFEHAE---GKTLLMVTHRLRGLERMDR---------IIVLDNGKIIE 552 (573)
T ss_pred HHHHHHHHHHHhc---CCeEEEEecccccHhhcCE---------EEEEECCeeee
Confidence 9999555555542 7899999999877777887 67778877644
No 366
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.42 E-value=4.9e-13 Score=165.57 Aligned_cols=150 Identities=15% Similarity=0.048 Sum_probs=101.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc--chHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS--ISVRD 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~d 700 (938)
..+.++++|++++|+.++|+||||||||||+|.++++.- +.+.-++||++..- -++.+
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~e 571 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRD 571 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHH
Confidence 468899999999999999999999999999999875421 11122466655421 11111
Q ss_pred ---------------HHHHhcCCchh-----------hhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 701 ---------------CIFARVGAGDC-----------QLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 701 ---------------~i~~~~~~~d~-----------~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
..+...|+.+. +..+-..+|++++|. +.+.+.+.+|+++||||||+++|+...
T Consensus 572 Ni~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te 651 (710)
T TIGR03796 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE 651 (710)
T ss_pred HhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHH
Confidence 12222333322 222224566555554 444455899999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
..+... +.+ .++|+|++||.++....+|+ ...+.++++.
T Consensus 652 ~~i~~~----l~~-~~~T~IiitHrl~~i~~~D~---------Iivl~~G~i~ 690 (710)
T TIGR03796 652 KIIDDN----LRR-RGCTCIIVAHRLSTIRDCDE---------IIVLERGKVV 690 (710)
T ss_pred HHHHHH----HHh-cCCEEEEEecCHHHHHhCCE---------EEEEeCCEEE
Confidence 776333 333 48999999999998888887 5556666554
No 367
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.42 E-value=4.6e-13 Score=174.56 Aligned_cols=155 Identities=11% Similarity=0.101 Sum_probs=108.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---h--h--------------hcccccccccc---cch---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---M--A--------------QVGSFVPCDRA---SIS--- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---l--a--------------q~g~~vp~~~~---~~~--- 697 (938)
..+.+++++.+.+|++++|+|||||||||||+++++..- . . +.-.|||++.. ..+
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E 855 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRE 855 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHH
Confidence 468899999999999999999999999999999976532 0 0 11135554321 111
Q ss_pred ---------------------HHHHHHHhcCCchhhhhccc----chHHHHHHHHHHH-HhCCCCc-EEEEeCCCCCCCh
Q 002306 698 ---------------------VRDCIFARVGAGDCQLRGVS----TFMQEMLETASIL-KGATDRS-LIIIDELGRGTST 750 (938)
Q Consensus 698 ---------------------~~d~i~~~~~~~d~~~~~~s----~f~~e~~~~~~il-~~a~~~s-lvllDEp~~gtd~ 750 (938)
.++.++..+|..+....... .+|+++++...|. ..+.+|+ +++|||||+|+|+
T Consensus 856 ~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~ 935 (1394)
T TIGR00956 856 SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDS 935 (1394)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCH
Confidence 12345556665543333332 5776666655544 4578895 9999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHH--HHHhhhcccccccccccceeEE-EEEEE
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHEL--TALAHENANEFNTKQMVGVANY-HVSAH 808 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el--~~~~~~~~~~~~~~~~~~v~~~-~~~~~ 808 (938)
.....+ ..+++.+++ .|+++|++||+++. .+.+++ .-.+.++ ++.+.
T Consensus 936 ~~~~~i-~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~---------vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 936 QTAWSI-CKLMRKLAD-HGQAILCTIHQPSAILFEEFDR---------LLLLQKGGQTVYF 985 (1394)
T ss_pred HHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHhcCE---------EEEEcCCCEEEEE
Confidence 988888 778888876 58999999999864 356776 5555655 66544
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=7.6e-13 Score=127.18 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=102.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-------hhhhcccc----------------------------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-------LMAQVGSF---------------------------- 688 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-------~laq~g~~---------------------------- 688 (938)
+|.++++|+++.|+.+++-||+|+||||+||++-... +..|.|.+
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 5667999999999999999999999999999973211 11112211
Q ss_pred cccccc-----------------cchHHHHHHHhcCCchhhhh-cccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 002306 689 VPCDRA-----------------SISVRDCIFARVGAGDCQLR-GVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTS 749 (938)
Q Consensus 689 vp~~~~-----------------~~~~~d~i~~~~~~~d~~~~-~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd 749 (938)
+|--.+ .......+++|+...+.+.. ..+||+++.+|..+|.+. ..+..++||||||+++|
T Consensus 105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccc
Confidence 111100 00112357788887776644 468999888887777775 78999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
..++..+ ..++..-.. .|+.++=+-||.+..+ .+++
T Consensus 185 a~Nr~vV-veli~e~Ka-~GaAlvGIFHDeevre~vadR 221 (235)
T COG4778 185 ATNRAVV-VELIREAKA-RGAALVGIFHDEEVREAVADR 221 (235)
T ss_pred ccchHHH-HHHHHHHHh-cCceEEEeeccHHHHHHHhhh
Confidence 9988887 555555444 6999999999998874 6766
No 369
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=99.41 E-value=3.4e-12 Score=115.29 Aligned_cols=92 Identities=30% Similarity=0.549 Sum_probs=85.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEE
Q 002306 465 SYDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVK 544 (938)
Q Consensus 465 ~~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (938)
|||++||.+++.++++.+.|+++++++++.++++ .+++.|++..||+|+|+++....+| .+ |+.++++++++|
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~---~lk~~~~~~~gy~i~v~~~~~~~~p--~~--~~~~~~~k~~~r 73 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGIP---SLKLVYIPKRGYLIEVPKSDEKKLP--KD--FIIVSSTKSGVR 73 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-T---TBEEEEETTTEEEEEEETCCGGGST--TT--EEEEEEESSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cEEEEEcCceEEEEEEEccccccCC--Cc--eEEEEEEcCcEE
Confidence 7999999999999999999999999999999996 8999999999999999999877886 34 999999999999
Q ss_pred EEChhHHHHHHHHHHHHHH
Q 002306 545 FTNTKLKKLGDQYQKVLEE 563 (938)
Q Consensus 545 ~~t~~l~~l~~~~~~~~~~ 563 (938)
|+|++|++|+.++.+++++
T Consensus 74 f~t~~l~~L~~~~~~~~ee 92 (92)
T PF05190_consen 74 FTTPELKELNEELKEAEEE 92 (92)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhcC
Confidence 9999999999999998764
No 370
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.41 E-value=4.4e-12 Score=156.95 Aligned_cols=151 Identities=15% Similarity=0.084 Sum_probs=101.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc--chH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS--ISV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~--~~~-- 698 (938)
..+.++++|++++|+.++|+||||||||||+|.++++.- +.+.-+|||++..- -++
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 566 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILE 566 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHH
Confidence 467889999999999999999999999999999875421 11122456655311 011
Q ss_pred --------------HHHHHHhcCCchhh-----------hhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhh
Q 002306 699 --------------RDCIFARVGAGDCQ-----------LRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 699 --------------~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~ 752 (938)
+.+.....|+.+.+ ..+-..+|++++|...++ +...+|+++||||||+++|+..
T Consensus 567 Ni~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 567 NLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred HHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 11222333333322 222345666655554444 4578999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
...+...+ ..+ .++|+|++||..+....+|+ ...+.++++.
T Consensus 647 e~~i~~~L-~~~---~~~T~IiitHr~~~~~~~D~---------i~~l~~G~i~ 687 (708)
T TIGR01193 647 EKKIVNNL-LNL---QDKTIIFVAHRLSVAKQSDK---------IIVLDHGKII 687 (708)
T ss_pred HHHHHHHH-HHh---cCCEEEEEecchHHHHcCCE---------EEEEECCEEE
Confidence 77774443 333 37899999999998888887 5555555543
No 371
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.41 E-value=7.4e-13 Score=158.50 Aligned_cols=142 Identities=15% Similarity=0.057 Sum_probs=96.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~-- 698 (938)
.++.++++|++++|+.++|+||||||||||+|.+++..-. .+.-++||++..- -++
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~ 414 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAE 414 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHH
Confidence 3688899999999999999999999999999998754211 1112355554311 011
Q ss_pred -------------HHHHHHhcCCchhh-----------hhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhH
Q 002306 699 -------------RDCIFARVGAGDCQ-----------LRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 699 -------------~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~ 753 (938)
+...+...++.+.+ ..+-..+|++++|...+. +.+.+|+++||||||+++|+...
T Consensus 415 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 415 NIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred HHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 12233334443322 222345666665554444 45789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ...+..+. .++++|++||+++....+|+
T Consensus 495 ~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~ 525 (529)
T TIGR02857 495 ALV-TEALRALA--QGRTVLLVTHRLALAERADR 525 (529)
T ss_pred HHH-HHHHHHhc--CCCEEEEEecCHHHHHhCCE
Confidence 888 44445444 47999999999988777665
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.39 E-value=3.1e-13 Score=130.36 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=100.3
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhH--------------------------hhhhc-------------ccc
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--------------------------LMAQV-------------GSF 688 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--------------------------~laq~-------------g~~ 688 (938)
.++..+..|+++=++|||||||||+|-.+|++. +++|- ..+
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~ 96 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH 96 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc
Confidence 445566789999999999999999999877542 23331 122
Q ss_pred cccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-------C-CCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 689 VPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-------A-TDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 689 vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-------a-~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
+|+ ...-+.++.|...++..|.+.+..+.++++..+...+... + ....|+|+|||.+++|.....++ .++
T Consensus 97 qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drl 174 (248)
T COG4138 97 QPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRL 174 (248)
T ss_pred Cch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHH
Confidence 344 2333455677777889999998888888766555443332 1 23479999999999999888887 999
Q ss_pred HHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 761 CEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+++++. .|.+||+++||..-+ +-+++
T Consensus 175 l~~~c~-~G~~vims~HDLNhTLrhA~~ 201 (248)
T COG4138 175 LSALCQ-QGLAIVMSSHDLNHTLRHAHR 201 (248)
T ss_pred HHHHHh-CCcEEEEeccchhhHHHHHHH
Confidence 999998 799999999996543 44554
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.38 E-value=9.4e-13 Score=173.30 Aligned_cols=153 Identities=15% Similarity=0.148 Sum_probs=104.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------hhccccccccccc--chHHHHH-----------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------AQVGSFVPCDRAS--ISVRDCI----------- 702 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------aq~g~~vp~~~~~--~~~~d~i----------- 702 (938)
..+.++++|.+.+|++++|+|||||||||||+++++..-. ...-.|+|++..- .++.+.|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~ 752 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL 752 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHH
Confidence 4578899999999999999999999999999999765321 1112355554311 1111111
Q ss_pred ------------HHhc--CCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002306 703 ------------FARV--GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (938)
Q Consensus 703 ------------~~~~--~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (938)
+..+ |....+......+|+++++...+++ .+.+|+++|||||++++|+..+..+...++....
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-- 830 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-- 830 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh--
Confidence 1222 3333334455677777766655555 4789999999999999999988887555544333
Q ss_pred CCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 768 IRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 768 ~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.|.++|++||+.++...+++ ...+.++++.
T Consensus 831 ~~~TvIlvTH~~~~~~~ad~---------ii~l~~G~i~ 860 (1560)
T PTZ00243 831 AGKTRVLATHQVHVVPRADY---------VVALGDGRVE 860 (1560)
T ss_pred CCCEEEEEeCCHHHHHhCCE---------EEEEECCEEE
Confidence 37899999999988887776 5555666554
No 374
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.38 E-value=1.4e-12 Score=160.97 Aligned_cols=150 Identities=14% Similarity=-0.011 Sum_probs=99.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc--chH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS--ISV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~--~~~-- 698 (938)
.++.++++|++++|+.++|+|||||||||+++.+++..- +.+.-++||++..- -++
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIre 573 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHH
Confidence 478899999999999999999999999999999875421 11122456655311 111
Q ss_pred -------------HHHHHHhcCCchhh-----------hhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 699 -------------RDCIFARVGAGDCQ-----------LRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 699 -------------~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
+.+.+...++.+.+ ..+-..+|++++| ++.+.+...+|+++||||||+++|+...
T Consensus 574 NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te 653 (711)
T TIGR00958 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653 (711)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHH
Confidence 11223333333222 2222346655555 4544455889999999999999999765
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
..+ .. .....++|+|++||..+....+|+ ...+.++++.
T Consensus 654 ~~i-~~----~~~~~~~TvIiItHrl~~i~~aD~---------IivL~~G~iv 692 (711)
T TIGR00958 654 QLL-QE----SRSRASRTVLLIAHRLSTVERADQ---------ILVLKKGSVV 692 (711)
T ss_pred HHH-HH----hhccCCCeEEEEeccHHHHHhCCE---------EEEEECCEEE
Confidence 555 33 222257899999999988888887 5556666654
No 375
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.37 E-value=1.1e-12 Score=171.27 Aligned_cols=154 Identities=11% Similarity=0.048 Sum_probs=105.1
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---h----------------h----hcccccccccc---cchH
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---M----------------A----QVGSFVPCDRA---SISV 698 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---l----------------a----q~g~~vp~~~~---~~~~ 698 (938)
+.+++++.+.+|++++|+||||||||||||++++... . . +.-.|+++... .+++
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV 155 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTV 155 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCH
Confidence 4558999999999999999999999999999986420 0 0 00124443310 0011
Q ss_pred -----------------------------HHHHHHhcCCchhhhhc-----ccchHHHHHH-HHHHHHhCCCCcEEEEeC
Q 002306 699 -----------------------------RDCIFARVGAGDCQLRG-----VSTFMQEMLE-TASILKGATDRSLIIIDE 743 (938)
Q Consensus 699 -----------------------------~d~i~~~~~~~d~~~~~-----~s~f~~e~~~-~~~il~~a~~~slvllDE 743 (938)
.+.++..+|+.+..... ...+|+++++ ++.+...+++|+++++||
T Consensus 156 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDE 235 (1394)
T TIGR00956 156 GETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDN 235 (1394)
T ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeC
Confidence 23345556665433221 2345655544 444555589999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh--HHHHHhhhcccccccccccceeEEEEEEE
Q 002306 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 744 p~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~--el~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
||+|||+.....+ ..+++.++++.|.++|++||++ ++.+++|+ ...+.++++.+.
T Consensus 236 PTsgLD~~~~~~i-~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~---------v~~L~~G~iv~~ 292 (1394)
T TIGR00956 236 ATRGLDSATALEF-IRALKTSANILDTTPLVAIYQCSQDAYELFDK---------VIVLYEGYQIYF 292 (1394)
T ss_pred CCCCcCHHHHHHH-HHHHHHHHHhcCCEEEEEecCCCHHHHHhhce---------EEEEeCCeEEEE
Confidence 9999999999998 6777888764589999999995 56678887 555666666544
No 376
>PLN03140 ABC transporter G family member; Provisional
Probab=99.37 E-value=7.3e-13 Score=172.19 Aligned_cols=155 Identities=13% Similarity=0.187 Sum_probs=105.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------------------hcccccccccc---cch---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------QVGSFVPCDRA---SIS--- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------------q~g~~vp~~~~---~~~--- 697 (938)
.+.+++++.+.+|++++|+||||||||||||++++..-.. +.-.||++... .++
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 3456899999999999999999999999999987643110 01123333210 011
Q ss_pred ----------------------------------------------------HHHHHHHhcCCchhh-----hhcccchH
Q 002306 698 ----------------------------------------------------VRDCIFARVGAGDCQ-----LRGVSTFM 720 (938)
Q Consensus 698 ----------------------------------------------------~~d~i~~~~~~~d~~-----~~~~s~f~ 720 (938)
.++.++..+|+.+.. ......+|
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 123455556654322 11223455
Q ss_pred HHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh--HHHHHhhhcccccccccc
Q 002306 721 QEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHENANEFNTKQM 797 (938)
Q Consensus 721 ~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~--el~~~~~~~~~~~~~~~~ 797 (938)
+++++. ..+...+.+|+++++|||++|||+.....+ ..+++.+++..|.++|++||++ ++.+++|+ .
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i-~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~---------v 408 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI-VKCLQQIVHLTEATVLMSLLQPAPETFDLFDD---------I 408 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHH-HHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe---------E
Confidence 555544 444455789999999999999999999999 5667777654589999999984 67788887 6
Q ss_pred cceeEEEEEEE
Q 002306 798 VGVANYHVSAH 808 (938)
Q Consensus 798 ~~v~~~~~~~~ 808 (938)
.-+.++++.+.
T Consensus 409 ilL~~G~ivy~ 419 (1470)
T PLN03140 409 ILLSEGQIVYQ 419 (1470)
T ss_pred EEeeCceEEEe
Confidence 66667776554
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.37 E-value=2.4e-12 Score=138.23 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=54.9
Q ss_pred hcccchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 714 RGVSTFMQEMLETASILKGA-----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 714 ~~~s~f~~e~~~~~~il~~a-----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.....+++++++...+.+.. .+|+++|+|||++|+|+.....+ +..+..+.+ ++++|++||..++..++++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~-~~~l~~~~~--~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAV-ANMIKELSD--GAQFITTTFRPELLEVADK 229 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHH-HHHHHHHhC--CCEEEEEecCHHHHhhCCE
Confidence 34567777777766555543 36899999999999999988887 666666653 7889999999888888876
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.36 E-value=1.2e-12 Score=136.43 Aligned_cols=74 Identities=16% Similarity=0.002 Sum_probs=54.8
Q ss_pred hhcccchHHHHHHH-------HHHHHhCCCCcEEEEeCCCCCCChhhHH-HHHHHHHHHHHhcCCCeEEEEeCChHHHHH
Q 002306 713 LRGVSTFMQEMLET-------ASILKGATDRSLIIIDELGRGTSTYDGF-GLAWAICEHLVEEIRAPTLFATHFHELTAL 784 (938)
Q Consensus 713 ~~~~s~f~~e~~~~-------~~il~~a~~~slvllDEp~~gtd~~~~~-~i~~~il~~l~~~~~~~~l~~TH~~el~~~ 784 (938)
....+.++.++++. +.+...+.+|+++|+|||++|+|+.... .+ ..++..+.++.+.++|++||++++...
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l-~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL-AEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH-HHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 34456677666663 2333346899999999999999998887 77 666777765337899999999988766
Q ss_pred hhh
Q 002306 785 AHE 787 (938)
Q Consensus 785 ~~~ 787 (938)
+++
T Consensus 189 ~d~ 191 (204)
T cd03240 189 ADH 191 (204)
T ss_pred CCE
Confidence 654
No 379
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.35 E-value=2.6e-12 Score=154.25 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=118.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhcccccccccc--------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRA-------- 694 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~-------- 694 (938)
..+.++++....+|++++|+||.||||||||+++++-.. +..+-+||+++..
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence 578899999999999999999999999999999875321 1112234444321
Q ss_pred -------------------cchHHHHHHHhcCCchhhhhccc-----ch-HHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 002306 695 -------------------SISVRDCIFARVGAGDCQLRGVS-----TF-MQEMLETASILKGATDRSLIIIDELGRGTS 749 (938)
Q Consensus 695 -------------------~~~~~d~i~~~~~~~d~~~~~~s-----~f-~~e~~~~~~il~~a~~~slvllDEp~~gtd 749 (938)
+...++.++..+|..+-...-.. .. .+|.+|++.++...++|+++++||||+|||
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD 202 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD 202 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence 12346677788886532222111 12 268889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEeCCh--HHHHHhhhcccccccccccceeEEEEEEEEE
Q 002306 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFH--ELTALAHENANEFNTKQMVGVANYHVSAHID 810 (938)
Q Consensus 750 ~~~~~~i~~~il~~l~~~~~~~~l~~TH~~--el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (938)
...+..+ ..+++.++++ |++||++-|.+ ++..+.|+ ..-+.++++.+...
T Consensus 203 S~sA~~v-v~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~---------l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 203 SFSALQV-VQLLKRLARS-GRTVICTIHQPSSELFELFDK---------LLLLSEGEVVYSGS 254 (613)
T ss_pred hhhHHHH-HHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhH---------hhhhcCCcEEEecC
Confidence 9999999 7888889985 99999999995 67788887 66677777766543
No 380
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.4e-12 Score=143.28 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=95.4
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH--hhh----hcccccccccc--------------------
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI--LMA----QVGSFVPCDRA-------------------- 694 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~--~la----q~g~~vp~~~~-------------------- 694 (938)
++..+.+..++....|+-++|+||||+|||||||+|+.-. .+. -.|+++|+...
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~ 170 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA 170 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence 4567777888888889999999999999999999997611 110 12555554321
Q ss_pred c---chHHHHHHHhcCCc-hhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 002306 695 S---ISVRDCIFARVGAG-DCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR 769 (938)
Q Consensus 695 ~---~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~ 769 (938)
. ..+.++++.-+|.. +-...+..+||++.+-. +.+.+...+|+|+||||||+-||.. +|+| +-+||.. .+
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~---av~W-Le~yL~t-~~ 245 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV---AVAW-LENYLQT-WK 245 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH---HHHH-HHHHHhh-CC
Confidence 0 11223355567744 44566778999887654 4444447899999999999999875 4534 4567776 67
Q ss_pred CeEEEEeCChHHH
Q 002306 770 APTLFATHFHELT 782 (938)
Q Consensus 770 ~~~l~~TH~~el~ 782 (938)
.|+|++|||-.+.
T Consensus 246 ~T~liVSHDr~FL 258 (582)
T KOG0062|consen 246 ITSLIVSHDRNFL 258 (582)
T ss_pred ceEEEEeccHHHH
Confidence 8999999997654
No 381
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.34 E-value=3.5e-12 Score=166.60 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 716 VSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 716 ~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+.+|++++|...|.+ .+.+|+++||||||+++|+.....+ ...++.+.+..|.++|++||+++..+.+++
T Consensus 577 g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i-~~~L~~~~~~~g~TvIiIsHrls~i~~aD~ 648 (1466)
T PTZ00265 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV-QKTINNLKGNENRITIIIAHRLSTIRYANT 648 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhhcCCCEEEEEeCCHHHHHhCCE
Confidence 3567777766655554 4789999999999999999887777 666666654348999999999988777776
No 382
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.34 E-value=4.8e-12 Score=136.51 Aligned_cols=71 Identities=7% Similarity=0.001 Sum_probs=55.5
Q ss_pred hcccchHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 714 RGVSTFMQEMLETASILKG-A----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 714 ~~~s~f~~e~~~~~~il~~-a----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.....+++++++...+.+. + .+|.++|+|||++|+|+.....+ ..++..+. .|.++|++||..++.+.+++
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~-~~~l~~~~--~g~~ii~iSH~~~~~~~~d~ 237 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNI-GRMIKTHF--KGSQFIVVSLKEGMFNNANV 237 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHc--CCCEEEEEECCHHHHHhCCE
Confidence 4456677777776555543 2 57799999999999999988888 56666664 37899999999998888877
No 383
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.33 E-value=2.9e-12 Score=168.50 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=105.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-------ccccccccccc--chHHHHH-----------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------VGSFVPCDRAS--ISVRDCI----------- 702 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-------~g~~vp~~~~~--~~~~d~i----------- 702 (938)
.++.++++|++++|++++|+|||||||||||+++++...... .-.|+|+...- -++.+.|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 357889999999999999999999999999999976532111 11355544311 1222222
Q ss_pred ---HHhcCCchh-----------hhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002306 703 ---FARVGAGDC-----------QLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (938)
Q Consensus 703 ---~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (938)
+...++.+. +.....++|+++++...++++ +.+|+++|||||++|+|+..+..+...++..+.+
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~- 597 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS- 597 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-
Confidence 111122111 222335677777776655554 7899999999999999999999995555555543
Q ss_pred CCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 768 IRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 768 ~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
++++|++||+++....+++ ...+.++++..
T Consensus 598 -~~tvilvtH~~~~~~~ad~---------ii~l~~g~i~~ 627 (1490)
T TIGR01271 598 -NKTRILVTSKLEHLKKADK---------ILLLHEGVCYF 627 (1490)
T ss_pred -CCeEEEEeCChHHHHhCCE---------EEEEECCEEEE
Confidence 7999999999988777877 55566666543
No 384
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.33 E-value=3.8e-12 Score=152.34 Aligned_cols=134 Identities=17% Similarity=0.040 Sum_probs=90.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhccccccccccc--chH---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRAS--ISV--- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~~--~~~--- 698 (938)
..+.+|++|++++|+.++|+||+||||||+++.+++..-. .+.-++||++..- -++
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHH
Confidence 3588999999999999999999999999999998654211 1122467765421 011
Q ss_pred ------------HHHHHHhcCCchhhhh-----------cccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhHH
Q 002306 699 ------------RDCIFARVGAGDCQLR-----------GVSTFMQEMLE-TASILKGATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 699 ------------~d~i~~~~~~~d~~~~-----------~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+.+.+...++.+.+.. +-..+|++++| ++.+.+...+|+++||||||+++|+....
T Consensus 428 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~ 507 (529)
T TIGR02868 428 LRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTES 507 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1223334444443321 12346655544 55555568999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
.|... ++.+. .++|+|++||.+
T Consensus 508 ~I~~~-l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 508 ELLED-LLAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHHHH-HHHhc--CCCEEEEEecCC
Confidence 87444 44443 479999999963
No 385
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.33 E-value=1.4e-11 Score=162.74 Aligned_cols=153 Identities=10% Similarity=0.030 Sum_probs=103.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-------hccccccccccc--chHHHH------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------QVGSFVPCDRAS--ISVRDC------------ 701 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-------q~g~~vp~~~~~--~~~~d~------------ 701 (938)
..+.++++|++++|++++|+|||||||||||+++++..-.. ..-.|+|++..- -++.+.
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 46788999999999999999999999999999997653211 111356655321 112221
Q ss_pred --HHHhcCCch-----------hhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH--HH
Q 002306 702 --IFARVGAGD-----------CQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEH--LV 765 (938)
Q Consensus 702 --i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~--l~ 765 (938)
+....+..+ .+..+-..+|+++++...+++ ...+++++|||||++++|+..+..+...+.+. +.
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 111112111 122334567777766655555 47899999999999999999988885555532 22
Q ss_pred hcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 766 EEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 766 ~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.++++|++||+.+....+++ ...+.++++.
T Consensus 811 --~~~tvIlvTH~~~~l~~~D~---------ii~l~~G~i~ 840 (1522)
T TIGR00957 811 --KNKTRILVTHGISYLPQVDV---------IIVMSGGKIS 840 (1522)
T ss_pred --cCCEEEEEeCChhhhhhCCE---------EEEecCCeEE
Confidence 37899999999988777776 5555566554
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.32 E-value=7.8e-12 Score=134.45 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=53.1
Q ss_pred cchHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 717 STFMQEMLETASILKG-A----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 717 s~f~~e~~~~~~il~~-a----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+++++++...+.+. + .+|+++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.++...+++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l-~~~i~~~~~-~g~~vi~isH~~~~~~~~d~ 227 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKV-ASYIREQAG-PNFQFIVISLKEEFFSKADA 227 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHH-HHHHHHhcc-CCcEEEEEECCHHHHhhCCe
Confidence 4566666665555543 3 35899999999999999988888 566666665 48999999999988877776
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.31 E-value=5.9e-12 Score=130.47 Aligned_cols=130 Identities=13% Similarity=0.094 Sum_probs=80.0
Q ss_pred ccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hccc----ccccc--cc--------------cc-----hHH
Q 002306 649 CKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVGS----FVPCD--RA--------------SI-----SVR 699 (938)
Q Consensus 649 ~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~g~----~vp~~--~~--------------~~-----~~~ 699 (938)
+.++.++| +.+|+||||+||||+|.++....... ..|. ++... .+ .. ..+
T Consensus 15 ~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T cd03276 15 LQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMA 93 (198)
T ss_pred eEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHH
Confidence 33443443 88999999999999999886421100 0000 00000 00 01 112
Q ss_pred HHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc--CCCeE
Q 002306 700 DCIFARVGAGDCQLRGVSTFMQEMLETASILKG-----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE--IRAPT 772 (938)
Q Consensus 700 d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-----a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~--~~~~~ 772 (938)
+.++.. .+.......++++++++...+... +.+|+++|+|||++|+|+.....+ ..++..+..+ .++++
T Consensus 94 ~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~-~~~l~~~~~~~~~~~~i 169 (198)
T cd03276 94 RSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIS-TDLLVKEAKKQPGRQFI 169 (198)
T ss_pred HHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHH-HHHHHHHHhcCCCcEEE
Confidence 233332 344455667788777776555443 479999999999999999988888 5555554432 24689
Q ss_pred EEEeCChHHHH
Q 002306 773 LFATHFHELTA 783 (938)
Q Consensus 773 l~~TH~~el~~ 783 (938)
+++||+++...
T Consensus 170 ii~th~~~~i~ 180 (198)
T cd03276 170 FITPQDISGLA 180 (198)
T ss_pred EEECCcccccc
Confidence 99999987654
No 388
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.30 E-value=7.1e-12 Score=139.62 Aligned_cols=154 Identities=19% Similarity=0.101 Sum_probs=104.8
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc--chHH
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS--ISVR 699 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~ 699 (938)
..++.++++|.+.+|+.++|+||+|||||||.|.+.++.. +...-.|+|++-.- =++.
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIa 427 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIA 427 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHH
Confidence 3588899999999999999999999999999999865431 11222366654310 0111
Q ss_pred HHHHHhcC---------------------------CchhhhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChh
Q 002306 700 DCIFARVG---------------------------AGDCQLRGVSTFMQEMLET-ASILKGATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 700 d~i~~~~~---------------------------~~d~~~~~~s~f~~e~~~~-~~il~~a~~~slvllDEp~~gtd~~ 751 (938)
++| +|++ -...+..+-+++|++++|. +.+.+...+|.||+||||-++||..
T Consensus 428 eNI-aRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 428 ENI-ARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHH-HhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 111 2222 1122333446677666554 5555557899999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
--.+++.++. ++.. .|++++++||-+.+...+|. .--++++.|..
T Consensus 507 GE~AL~~Ai~-~~k~-rG~~vvviaHRPs~L~~~Dk---------ilvl~~G~~~~ 551 (580)
T COG4618 507 GEAALAAAIL-AAKA-RGGTVVVIAHRPSALASVDK---------ILVLQDGRIAA 551 (580)
T ss_pred HHHHHHHHHH-HHHH-cCCEEEEEecCHHHHhhcce---------eeeecCChHHh
Confidence 6667755554 4555 69999999999999888777 44455555543
No 389
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.28 E-value=1.3e-11 Score=125.64 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=73.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhhHhhhhc-----------cc--ccccccccchHH-H-HHHHhc-CCchhhhhcccchH
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNILMAQV-----------GS--FVPCDRASISVR-D-CIFARV-GAGDCQLRGVSTFM 720 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~laq~-----------g~--~vp~~~~~~~~~-d-~i~~~~-~~~d~~~~~~s~f~ 720 (938)
.+.+|+||||+|||++|..++........ .. -.++..+.+.+. + .++.-. |....+ ++
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~------LS 96 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQI------LS 96 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCccc------CC
Confidence 38999999999999999998653211000 00 011111111110 0 000000 001111 34
Q ss_pred HHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 721 QEMLETASILKG-----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 721 ~e~~~~~~il~~-----a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+++++...+.+. ..+|+++|+|||++|+|+.....+ ...+..+.+ .|+++|++||+++....+++
T Consensus 97 ~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i-~~~L~~~~~-~g~tiIiiSH~~~~~~~adr 166 (178)
T cd03239 97 GGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRV-SDMIKEMAK-HTSQFIVITLKKEMFENADK 166 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEECCHHHHhhCCe
Confidence 444444333332 368999999999999999988887 556666665 47899999999988776665
No 390
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.26 E-value=2.1e-11 Score=147.21 Aligned_cols=152 Identities=18% Similarity=0.139 Sum_probs=103.7
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH---------------------hhhhccccccccccc--chH
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------LMAQVGSFVPCDRAS--ISV 698 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------~laq~g~~vp~~~~~--~~~ 698 (938)
+..+.++++|.+++|+.++|+||+||||||+++.+.... +..++| +||++..- -++
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Qd~~LF~~TI 419 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQDPLLFSGTI 419 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcccceeecccH
Confidence 357888999999999999999999999999999986431 234455 77755421 111
Q ss_pred HH---------------HH---------HHhc--CCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002306 699 RD---------------CI---------FARV--GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 699 ~d---------------~i---------~~~~--~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~ 751 (938)
.+ +. +.++ |....+..+-+.+|++++|...+.+ ...+|+++||||||+++|+.
T Consensus 420 ~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~ 499 (567)
T COG1132 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499 (567)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence 11 11 1222 2222222233466766666555554 47899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.-..|..++. .+.+ +.|+++++|.+.....+|+ .-.+.++++.
T Consensus 500 tE~~I~~~l~-~l~~--~rT~iiIaHRlsti~~aD~---------IiVl~~G~i~ 542 (567)
T COG1132 500 TEALIQDALK-KLLK--GRTTLIIAHRLSTIKNADR---------IIVLDNGRIV 542 (567)
T ss_pred hHHHHHHHHH-HHhc--CCEEEEEeccHhHHHhCCE---------EEEEECCEEE
Confidence 8888855544 4543 5689999999887777887 6667777743
No 391
>PLN03232 ABC transporter C family member; Provisional
Probab=99.26 E-value=1.6e-11 Score=161.89 Aligned_cols=153 Identities=12% Similarity=0.034 Sum_probs=105.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh--------ccccccccccc--chHHH------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------VGSFVPCDRAS--ISVRD------------ 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq--------~g~~vp~~~~~--~~~~d------------ 700 (938)
.++.++++|++++|+.++|+||+|||||||++.+.+..-... .-.|||++..- -++.+
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~ 709 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESER 709 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHH
Confidence 467889999999999999999999999999999875432211 12466655421 11222
Q ss_pred --HHHHhcCCchhh-----------hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q 002306 701 --CIFARVGAGDCQ-----------LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766 (938)
Q Consensus 701 --~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~ 766 (938)
+++...+..+++ ..+-..+|+++++...++| ...+++++|||||++++|+..+..+...++....
T Consensus 710 ~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l- 788 (1495)
T PLN03232 710 YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL- 788 (1495)
T ss_pred HHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-
Confidence 222333333322 1222356766666555554 4789999999999999999988888666665543
Q ss_pred cCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 767 EIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 767 ~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.++|+|++||..+....+|+ ...+.++++.
T Consensus 789 -~~kT~IlvTH~~~~l~~aD~---------Ii~L~~G~i~ 818 (1495)
T PLN03232 789 -KGKTRVLVTNQLHFLPLMDR---------IILVSEGMIK 818 (1495)
T ss_pred -cCCEEEEEECChhhHHhCCE---------EEEEeCCEEE
Confidence 37899999999988877877 5556666654
No 392
>PLN03130 ABC transporter C family member; Provisional
Probab=99.25 E-value=2.2e-11 Score=160.78 Aligned_cols=153 Identities=10% Similarity=-0.013 Sum_probs=105.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh--------ccccccccccc--chH--------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------VGSFVPCDRAS--ISV-------------- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq--------~g~~vp~~~~~--~~~-------------- 698 (938)
.++.++++|++++|+.++|+||+|||||||++.+.+..-... .-.|||++..- -++
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~ 709 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPER 709 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHH
Confidence 467889999999999999999999999999999876543222 12466665421 111
Q ss_pred HHHHHHhcCCchhh-----------hhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q 002306 699 RDCIFARVGAGDCQ-----------LRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766 (938)
Q Consensus 699 ~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~ 766 (938)
.++++...++.+++ ..+-..+|+++++...++ +...+++++|||||++++|+..+..+...++..+.
T Consensus 710 y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l- 788 (1622)
T PLN03130 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL- 788 (1622)
T ss_pred HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-
Confidence 12222333333322 222245676666655444 45789999999999999999988888666665544
Q ss_pred cCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 767 EIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 767 ~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.++|+|++||..+....+|+ ...+.++++.
T Consensus 789 -~~kTvIlVTH~l~~l~~aD~---------Ii~L~~G~i~ 818 (1622)
T PLN03130 789 -RGKTRVLVTNQLHFLSQVDR---------IILVHEGMIK 818 (1622)
T ss_pred -cCCEEEEEECCHhHHHhCCE---------EEEEeCCEEE
Confidence 37999999999988887877 5556666554
No 393
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.23 E-value=2.6e-11 Score=148.91 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=102.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH---------------------hhhhccccccccc--ccchHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------LMAQVGSFVPCDR--ASISVR 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------~laq~g~~vp~~~--~~~~~~ 699 (938)
..|.++++|.+++|+.++|+||+||||||+++.+.... +..++|. |.++. ...++.
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~igl-V~QePvlF~~tI~ 444 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGL-VSQEPVLFATTIR 444 (1228)
T ss_pred chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCe-eeechhhhcccHH
Confidence 47899999999999999999999999999999986431 2234442 22221 011111
Q ss_pred HHH---------------HHhcCCchh---hhh--------cccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002306 700 DCI---------------FARVGAGDC---QLR--------GVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 700 d~i---------------~~~~~~~d~---~~~--------~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~ 752 (938)
++| ...-++.+. +.. +--.++++++|...|.++ +.+|.++||||||++||+..
T Consensus 445 eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s 524 (1228)
T KOG0055|consen 445 ENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 524 (1228)
T ss_pred HHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH
Confidence 111 000111111 111 112366777776655554 78999999999999999976
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
...+ ...+.+... |.|+|+++|.+.-.+-+|. ...+.++++.-.
T Consensus 525 e~~V-q~ALd~~~~--grTTivVaHRLStIrnaD~---------I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 525 ERVV-QEALDKASK--GRTTIVVAHRLSTIRNADK---------IAVMEEGKIVEQ 568 (1228)
T ss_pred HHHH-HHHHHHhhc--CCeEEEEeeehhhhhccCE---------EEEEECCEEEEe
Confidence 6555 777777664 8899999999988777877 666777776543
No 394
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.22 E-value=3.3e-11 Score=130.53 Aligned_cols=153 Identities=18% Similarity=0.117 Sum_probs=107.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-------hhh----------------------h--cccccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-------LMA----------------------Q--VGSFVPCD 692 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-------~la----------------------q--~g~~vp~~ 692 (938)
...++++|+...|+.++|+|.+||||||+=+++..+. +.. | .|++-|--
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm 380 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM 380 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence 3457899999999999999999999999877764321 000 0 12222211
Q ss_pred cc-------------------cchHHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q 002306 693 RA-------------------SISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 693 ~~-------------------~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~ 751 (938)
.. +...+-..+..+|+. +...+....||+++++...|.++ ..+|++|+|||||+.||-.
T Consensus 381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 10 001111234455643 34555667899888776666654 7899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
-...+ ..+++.|.++.|..-||+|||+.+. .+|++ ...++++++.
T Consensus 461 VQaQv-v~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~---------viVm~~GkiV 506 (534)
T COG4172 461 VQAQV-LDLLRDLQQKHGLSYLFISHDLAVVRALCHR---------VIVMRDGKIV 506 (534)
T ss_pred HHHHH-HHHHHHHHHHhCCeEEEEeccHHHHHHhhce---------EEEEeCCEEe
Confidence 77777 8889999888899999999998877 47776 5556666653
No 395
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=130.44 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=85.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--hhhccccc------------------cccc--ccc-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--MAQVGSFV------------------PCDR--ASI----- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--laq~g~~v------------------p~~~--~~~----- 696 (938)
.+..|+.|....|+-++|+|||||||||+|++|+.-.. ..++++|. ++.. .++
T Consensus 89 ~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E 168 (614)
T KOG0927|consen 89 ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAE 168 (614)
T ss_pred eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44558889889999999999999999999999975322 12222221 1000 000
Q ss_pred -----------hHHH-------------------HHHHhcC-CchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCC
Q 002306 697 -----------SVRD-------------------CIFARVG-AGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDEL 744 (938)
Q Consensus 697 -----------~~~d-------------------~i~~~~~-~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp 744 (938)
.-.+ +++.-+| ....+.+..-.||++.+..+.+. ....+|+|+|||||
T Consensus 169 ~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEP 248 (614)
T KOG0927|consen 169 DLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEP 248 (614)
T ss_pred HHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCC
Confidence 0011 1222222 22233344455666655544444 44789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCC-eEEEEeCChHHH-HHhhh
Q 002306 745 GRGTSTYDGFGLAWAICEHLVEEIRA-PTLFATHFHELT-ALAHE 787 (938)
Q Consensus 745 ~~gtd~~~~~~i~~~il~~l~~~~~~-~~l~~TH~~el~-~~~~~ 787 (938)
|.|||+..... +-++|.+ ... ++++++|+.+.. .+|.+
T Consensus 249 tnhLDleA~~w----Lee~L~k-~d~~~lVi~sh~QDfln~vCT~ 288 (614)
T KOG0927|consen 249 TNHLDLEAIVW----LEEYLAK-YDRIILVIVSHSQDFLNGVCTN 288 (614)
T ss_pred ccCCCHHHHHH----HHHHHHh-ccCceEEEEecchhhhhhHhhh
Confidence 99999953222 3455665 344 789999998765 57766
No 396
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.22 E-value=2.5e-11 Score=133.55 Aligned_cols=143 Identities=21% Similarity=0.145 Sum_probs=93.8
Q ss_pred CcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh---------------------Hhhhhcccccccccc-----
Q 002306 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN---------------------ILMAQVGSFVPCDRA----- 694 (938)
Q Consensus 641 ~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~---------------------~~laq~g~~vp~~~~----- 694 (938)
++..|..|++|.+.+|+.++|+||+||||||+||.+-.. .+..++| .||++..
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQDtvLFNdT 627 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQDTVLFNDT 627 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCcceeecce
Confidence 456888999999999999999999999999999986321 1223444 5676541
Q ss_pred --------cchHH-H---------HHHHhc-CCchh-----hhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 002306 695 --------SISVR-D---------CIFARV-GAGDC-----QLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTST 750 (938)
Q Consensus 695 --------~~~~~-d---------~i~~~~-~~~d~-----~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~ 750 (938)
+.+.- + .|..|+ +..+. -.+|+.--.+|.++++.+......|++++|||.|+.+|+
T Consensus 628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 11000 0 111111 11110 011222222555666555555789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..-.+| .+.+..++. +.|.|++.|-+.-.--+|.
T Consensus 708 ~tER~I-QaaL~rlca--~RTtIVvAHRLSTivnAD~ 741 (790)
T KOG0056|consen 708 NTERAI-QAALARLCA--NRTTIVVAHRLSTIVNADL 741 (790)
T ss_pred ccHHHH-HHHHHHHhc--CCceEEEeeeehheecccE
Confidence 999999 888888885 6788888887654433443
No 397
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.21 E-value=5e-11 Score=155.97 Aligned_cols=144 Identities=10% Similarity=0.009 Sum_probs=97.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------------------------------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------------------------------------- 683 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------------------------------------- 683 (938)
..|.++++|++++|+.++|+||+||||||+++.+....-..
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 36899999999999999999999999999999987653320
Q ss_pred --------------h---------------------cccccccccc--cchHHH---------------HHHHhcCCchh
Q 002306 684 --------------Q---------------------VGSFVPCDRA--SISVRD---------------CIFARVGAGDC 711 (938)
Q Consensus 684 --------------q---------------------~g~~vp~~~~--~~~~~d---------------~i~~~~~~~d~ 711 (938)
. .-++||++.. .-++.+ ......++.+.
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~f 1340 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEF 1340 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 1 1134555431 111111 11222233222
Q ss_pred h-----------hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 712 Q-----------LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 712 ~-----------~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
+ ..+-..+|++++|...|++ .+.+|+++||||||+++|+.....| ...+..+....+.|+|++||.+
T Consensus 1341 I~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I-~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI-EKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhccCCCEEEEEechH
Confidence 2 1222456766666555554 5889999999999999999887777 4445555322479999999999
Q ss_pred HHHHHhhh
Q 002306 780 ELTALAHE 787 (938)
Q Consensus 780 el~~~~~~ 787 (938)
...+.+|+
T Consensus 1420 sti~~aD~ 1427 (1466)
T PTZ00265 1420 ASIKRSDK 1427 (1466)
T ss_pred HHHHhCCE
Confidence 88888877
No 398
>PLN03232 ABC transporter C family member; Provisional
Probab=99.21 E-value=2.2e-10 Score=151.31 Aligned_cols=152 Identities=12% Similarity=0.051 Sum_probs=104.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhcccccccccccc--h---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRASI--S--- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~~--~--- 697 (938)
..|.+|++|++++|+.++|+||+||||||+++.+..+.- +.+.-++||++..-+ +
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHH
Confidence 468899999999999999999999999999999864321 111224666654110 1
Q ss_pred -----------HHHHHHHhcCCchhh-----------hhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q 002306 698 -----------VRDCIFARVGAGDCQ-----------LRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 698 -----------~~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~ 754 (938)
-+.+.+.+.++.+.+ ..+-+.+|++++|+..+.++ ..+|+++||||||+++|+..-.
T Consensus 1329 NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~ 1408 (1495)
T PLN03232 1329 NIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408 (1495)
T ss_pred HcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 112233444443322 22334677777666555554 7899999999999999998766
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.| ...++... .++|+|++||.++....+|+ .-.+.++++.
T Consensus 1409 ~I-q~~L~~~~--~~~TvI~IAHRl~ti~~~Dr---------IlVL~~G~iv 1448 (1495)
T PLN03232 1409 LI-QRTIREEF--KSCTMLVIAHRLNTIIDCDK---------ILVLSSGQVL 1448 (1495)
T ss_pred HH-HHHHHHHc--CCCEEEEEeCCHHHHHhCCE---------EEEEECCEEE
Confidence 66 55555543 37999999999988777777 5555666553
No 399
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.7e-10 Score=124.67 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=120.3
Q ss_pred CCCCccCCCCCccEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc-----c
Q 002306 613 YTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG-----S 687 (938)
Q Consensus 613 ~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g-----~ 687 (938)
+-+|.--++ -..+++++.|....+ ..|-.+.+++++..|+++.|+|.||||||||++.+.++.-....+ -
T Consensus 311 ~~~~q~~p~-~~~lelrnvrfay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~ 385 (546)
T COG4615 311 FPRPQAFPD-WKTLELRNVRFAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (546)
T ss_pred CCCCCcCCc-ccceeeeeeeeccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc
Confidence 444443332 124888887766554 237778888888999999999999999999999886643332222 2
Q ss_pred ccccccc--cchHHHHHHH-------------------------hcCCchhhhhcccch------HHHHHHHHHHHHhCC
Q 002306 688 FVPCDRA--SISVRDCIFA-------------------------RVGAGDCQLRGVSTF------MQEMLETASILKGAT 734 (938)
Q Consensus 688 ~vp~~~~--~~~~~d~i~~-------------------------~~~~~d~~~~~~s~f------~~e~~~~~~il~~a~ 734 (938)
+|.++.. .-+.+..+|+ |+.......-.-..| .++.++++.+++.+-
T Consensus 386 pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE 465 (546)
T COG4615 386 PVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE 465 (546)
T ss_pred cCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh
Confidence 2222221 1122233333 322211111111112 167788899999899
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 735 ~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
+++++++||-.+--||.-+...-..++-.+.+ .|.|++.+|||..-...+|+ .-.++|+++.
T Consensus 466 eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~-qGKTI~aIsHDd~YF~~ADr---------ll~~~~G~~~ 527 (546)
T COG4615 466 ERDILVLDEWAADQDPAFRREFYQVLLPLLKE-QGKTIFAISHDDHYFIHADR---------LLEMRNGQLS 527 (546)
T ss_pred hCCeEEeehhhccCChHHHHHHHHHHhHHHHH-hCCeEEEEecCchhhhhHHH---------HHHHhcCcee
Confidence 99999999999999999999886666676765 79999999999777777888 6677777654
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.19 E-value=3.8e-11 Score=125.77 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=51.7
Q ss_pred cccchHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC-CeEEEEeCCh-HHHHHhhh
Q 002306 715 GVSTFMQEMLETASILKG-----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIR-APTLFATHFH-ELTALAHE 787 (938)
Q Consensus 715 ~~s~f~~e~~~~~~il~~-----a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~-~~~l~~TH~~-el~~~~~~ 787 (938)
...++++++++++.+... +.+|+++|+|||++|+|+.....+ +.++..+.++.| .++|++||+. +..+.+++
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i-~~~l~~~~~~~g~~~viiith~~~~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKV-FDMLVETACKEGTSQYFLITPKLLPGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHH-HHHHHHHhhcCCCceEEEEchhhccCCcccCc
Confidence 345777788876554432 579999999999999999988888 666666665324 5799999985 33344443
No 401
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.18 E-value=5.9e-11 Score=156.34 Aligned_cols=142 Identities=10% Similarity=0.014 Sum_probs=98.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-------------------hhhcccccccccccc--hH---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------------------MAQVGSFVPCDRASI--SV--- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-------------------laq~g~~vp~~~~~~--~~--- 698 (938)
..+.++++|++.+|+.++|+|++|||||||++++..+.- +.+.-++||++..-+ ++
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 578999999999999999999999999999999876531 111123556554211 01
Q ss_pred -----------HHHHHHhcCCchhhh-----------hcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 699 -----------RDCIFARVGAGDCQL-----------RGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 699 -----------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+...+.+.++.+.+. .+-+.||++++|+..+++ .+.+++++||||||+++|+..-..
T Consensus 1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~ 1391 (1490)
T TIGR01271 1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391 (1490)
T ss_pred hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 123344455443322 222357776666555444 478999999999999999987666
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
| ...+.... .++|+|++||.++....+|+
T Consensus 1392 I-~~~L~~~~--~~~TvI~IaHRl~ti~~~Dr 1420 (1490)
T TIGR01271 1392 I-RKTLKQSF--SNCTVILSEHRVEALLECQQ 1420 (1490)
T ss_pred H-HHHHHHHc--CCCEEEEEecCHHHHHhCCE
Confidence 6 55555543 37999999999887777776
No 402
>PLN03130 ABC transporter C family member; Provisional
Probab=99.18 E-value=8.1e-11 Score=155.46 Aligned_cols=153 Identities=12% Similarity=0.033 Sum_probs=106.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhcccccccccccc--hH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRASI--SV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~~--~~-- 698 (938)
..|.++++|++++|+.++|+||+||||||+++.+..+.- +.+.-++||++..-+ ++
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHH
Confidence 468899999999999999999999999999999865421 111224566554110 11
Q ss_pred ------------HHHHHHhcCCchh-----------hhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q 002306 699 ------------RDCIFARVGAGDC-----------QLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 699 ------------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~ 754 (938)
+...+.+.++.+. +..+-+.+|++++|+..+.++ ..+|+++||||||+++|+..-.
T Consensus 1332 NLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~ 1411 (1622)
T PLN03130 1332 NLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411 (1622)
T ss_pred HhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence 1122333333332 223335677777776555554 7899999999999999998766
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.| ...++... .++|+|+++|..+....+|+ ...+.++++..
T Consensus 1412 ~I-q~~I~~~~--~~~TvI~IAHRL~tI~~~Dr---------IlVLd~G~IvE 1452 (1622)
T PLN03130 1412 LI-QKTIREEF--KSCTMLIIAHRLNTIIDCDR---------ILVLDAGRVVE 1452 (1622)
T ss_pred HH-HHHHHHHC--CCCEEEEEeCChHHHHhCCE---------EEEEECCEEEE
Confidence 66 55555544 37999999999988877887 66677777643
No 403
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.17 E-value=2.3e-11 Score=118.42 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=66.8
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cch------
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SIS------ 697 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~------ 697 (938)
++++|.+.+|++++|+||||||||||++++++.... .+.-.++|.... ...
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 478888899999999999999999999998754321 112234444421 111
Q ss_pred --HHHHHHHhcCCchhhhhcc----cchHHHHHHHHHH-HHhCCCCcEEEEeCCCC
Q 002306 698 --VRDCIFARVGAGDCQLRGV----STFMQEMLETASI-LKGATDRSLIIIDELGR 746 (938)
Q Consensus 698 --~~d~i~~~~~~~d~~~~~~----s~f~~e~~~~~~i-l~~a~~~slvllDEp~~ 746 (938)
.+..++..++..+...... +.+++++++...+ ...+.+|+++|||||++
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2335666777555333333 7787666555444 44578999999999985
No 404
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=1.5e-10 Score=143.21 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=63.7
Q ss_pred HHhcCCch-hhhhcccchHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 703 FARVGAGD-CQLRGVSTFMQEMLETASILKG-AT---DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 703 ~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~---~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
+..+|+.. .+.+..+++|+++++...+.+. +. +|+++|||||++|+|+.+...+ +.++..+.+ .|.++|++||
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L-~~~L~~l~~-~G~TVIvi~H 889 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKL-LEVLQRLVD-QGNTVVVIEH 889 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeC
Confidence 34456654 3566678888877776655554 32 5899999999999999999998 677777776 5899999999
Q ss_pred ChHHHHHhhh
Q 002306 778 FHELTALAHE 787 (938)
Q Consensus 778 ~~el~~~~~~ 787 (938)
++++...+++
T Consensus 890 ~~~~i~~aD~ 899 (924)
T TIGR00630 890 NLDVIKTADY 899 (924)
T ss_pred CHHHHHhCCE
Confidence 9988776665
No 405
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.17 E-value=2.2e-10 Score=142.15 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=62.7
Q ss_pred HhcCCch-hhhhcccchHHHHHHHHHHHHh-CCCC---cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 704 ARVGAGD-CQLRGVSTFMQEMLETASILKG-ATDR---SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 704 ~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~~~---slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
..+|+.. .+....+++|+++++...+.+. +.++ .++|||||++|+|+.+...+ +.++..+.+ .|.++|++||+
T Consensus 815 ~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L-~~~L~~l~~-~G~TVIiitH~ 892 (943)
T PRK00349 815 VDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKL-LEVLHRLVD-KGNTVVVIEHN 892 (943)
T ss_pred HHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecC
Confidence 3456543 3556677888777776555554 4555 89999999999999999988 677777776 58999999999
Q ss_pred hHHHHHhhh
Q 002306 779 HELTALAHE 787 (938)
Q Consensus 779 ~el~~~~~~ 787 (938)
+++...++.
T Consensus 893 ~~~i~~aD~ 901 (943)
T PRK00349 893 LDVIKTADW 901 (943)
T ss_pred HHHHHhCCE
Confidence 988776655
No 406
>PTZ00243 ABC transporter; Provisional
Probab=99.17 E-value=1e-10 Score=154.24 Aligned_cols=151 Identities=15% Similarity=0.082 Sum_probs=104.8
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhcccccccccccc--hH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRASI--SV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~~--~~-- 698 (938)
..|.++++|++.+|+.++|+|++||||||+++.+..+.- +.+.-++||++..-+ ++
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence 468899999999999999999999999999999864321 122234667664210 11
Q ss_pred ------------HHHHHHhcCCchhh-----------hhcccchHHHHHHHHHHHHh-CCC-CcEEEEeCCCCCCChhhH
Q 002306 699 ------------RDCIFARVGAGDCQ-----------LRGVSTFMQEMLETASILKG-ATD-RSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 699 ------------~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-a~~-~slvllDEp~~gtd~~~~ 753 (938)
+...+...|+.+.+ ..+-+.+|++++|+..+.++ +.+ ++++||||||+++|+..-
T Consensus 1403 NIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1403 NVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred HhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 12333444444332 22335678777777666665 554 799999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEE
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHV 805 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~ 805 (938)
..| ...+.... .++|+|+++|.++....+|+ ...+.++++
T Consensus 1483 ~~I-q~~L~~~~--~~~TvI~IAHRl~ti~~~Dr---------IlVLd~G~V 1522 (1560)
T PTZ00243 1483 RQI-QATVMSAF--SAYTVITIAHRLHTVAQYDK---------IIVMDHGAV 1522 (1560)
T ss_pred HHH-HHHHHHHC--CCCEEEEEeccHHHHHhCCE---------EEEEECCEE
Confidence 777 55555543 37999999999988887877 555555554
No 407
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.15 E-value=2.2e-10 Score=124.22 Aligned_cols=143 Identities=14% Similarity=0.054 Sum_probs=99.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------------hhcccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------------AQVGSFVPCD 692 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------------aq~g~~vp~~ 692 (938)
.-+.++++|++..|+.++|+|.+|||||.....|..+.-- ..++ ++.++
T Consensus 23 ~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~-MIFQE 101 (534)
T COG4172 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIG-MIFQE 101 (534)
T ss_pred eEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceE-EEecc
Confidence 3556799999999999999999999999988877543110 0011 11111
Q ss_pred cc-cchH--------------------------HHHHHHhcCCch---hhhhcccchHHHHHHHHH-HHHhCCCCcEEEE
Q 002306 693 RA-SISV--------------------------RDCIFARVGAGD---CQLRGVSTFMQEMLETAS-ILKGATDRSLIII 741 (938)
Q Consensus 693 ~~-~~~~--------------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~-il~~a~~~slvll 741 (938)
.. .+.+ .-.++.++|..+ .+......+|++.++... +++.+++|+|+|.
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIA 181 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEee
Confidence 10 0000 113455666543 233444566766655544 4556899999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 742 DELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 742 DEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
||||..||..-...| ..+++.|..+.|..++|+|||+.+. +++++
T Consensus 182 DEPTTALDVtvQaQI-L~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 182 DEPTTALDVTVQAQI-LDLLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred cCCcchhhhhhHHHH-HHHHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 999999999888888 7888888887899999999999877 47777
No 408
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.15 E-value=1e-09 Score=127.75 Aligned_cols=142 Identities=17% Similarity=0.092 Sum_probs=97.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc---------ccccccc-----------------ccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG---------SFVPCDR-----------------ASI 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g---------~~vp~~~-----------------~~~ 696 (938)
....++.+|.+++|+-+.|+||||||||||+|++|++-..+... .|+|++. ..+
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~ 485 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDF 485 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCC
Confidence 46667888888999999999999999999999999874333211 3444332 001
Q ss_pred h--HHHHHHHhcCCchhhhh------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 002306 697 S--VRDCIFARVGAGDCQLR------GVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE 767 (938)
Q Consensus 697 ~--~~d~i~~~~~~~d~~~~------~~s~f~-~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~ 767 (938)
+ .+-.++..+|+.+-..+ -...++ +|+++++.+.-..++|++++|||-|+++|+..-..+...+.+++
T Consensus 486 ~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--- 562 (604)
T COG4178 486 SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--- 562 (604)
T ss_pred ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC---
Confidence 1 12234555554432211 112233 67778877777789999999999999999987777733333322
Q ss_pred CCCeEEEEeCChHHHHHhhh
Q 002306 768 IRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 768 ~~~~~l~~TH~~el~~~~~~ 787 (938)
.++++|.+.|-..+..+.++
T Consensus 563 p~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 563 PDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred CCCEEEEeccchhhHHHHhh
Confidence 47999999999888776655
No 409
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.14 E-value=1.2e-10 Score=153.89 Aligned_cols=152 Identities=9% Similarity=-0.032 Sum_probs=103.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc-------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS------- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~------- 695 (938)
..|.++++|++++|+.++|+||+||||||+++.+..+.- +.+.-++||++..-
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~ 1378 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRM 1378 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHH
Confidence 468999999999999999999999999999999864321 11122456655411
Q ss_pred -ch--------HHHHHHHhcCCchh-----------hhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 696 -IS--------VRDCIFARVGAGDC-----------QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 696 -~~--------~~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
+. -+...+...++.+. +..+-+.||++++|+..+.+ .+.+++++||||||+++|+..-.
T Consensus 1379 NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~ 1458 (1522)
T TIGR00957 1379 NLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458 (1522)
T ss_pred HcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 11 11122333343332 22233567776666655554 47899999999999999997766
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.| ...++... .++|+|+++|..+....+|+ .-.+.++++.
T Consensus 1459 ~I-q~~l~~~~--~~~TvI~IAHRl~ti~~~Dr---------IlVld~G~Iv 1498 (1522)
T TIGR00957 1459 LI-QSTIRTQF--EDCTVLTIAHRLNTIMDYTR---------VIVLDKGEVA 1498 (1522)
T ss_pred HH-HHHHHHHc--CCCEEEEEecCHHHHHhCCE---------EEEEECCEEE
Confidence 66 55555543 37999999999988877777 5555666553
No 410
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.13 E-value=2.4e-10 Score=147.72 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHhcCCchh-hhhcccchHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 702 IFARVGAGDC-QLRGVSTFMQEMLETASILKGA----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 702 i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~a----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
++..+|+.+. +.....++|+++++...+.+.. .+|+++|||||++|+|+.+...+ ..++..+.+ .|.++|++|
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~L-l~lL~~L~~-~G~TVIiIs 869 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL-IYVLQSLTH-QGHTVVIIE 869 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEe
Confidence 3445676654 5667778888877776666553 58999999999999999999988 777777876 589999999
Q ss_pred CChHHHHHhhh
Q 002306 777 HFHELTALAHE 787 (938)
Q Consensus 777 H~~el~~~~~~ 787 (938)
|+++....+++
T Consensus 870 Hdl~~i~~aDr 880 (1809)
T PRK00635 870 HNMHVVKVADY 880 (1809)
T ss_pred CCHHHHHhCCE
Confidence 99988777776
No 411
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.9e-10 Score=134.19 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=93.7
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh--------------------Hhhh-hccccccccc--ccchH
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN--------------------ILMA-QVGSFVPCDR--ASISV 698 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~--------------------~~la-q~g~~vp~~~--~~~~~ 698 (938)
...|.+|++|++.+|++++|+|||||||||+...+-.. .++. ++| +|.++. ..-++
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig-~V~QEPvLFs~sI 558 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG-LVGQEPVLFSGSI 558 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee-eeeccceeecccH
Confidence 45789999999999999999999999999999876321 1111 222 332222 00111
Q ss_pred H------------------------HHHHHhcC--CchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002306 699 R------------------------DCIFARVG--AGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 699 ~------------------------d~i~~~~~--~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~ 751 (938)
. +.+.+.+. -+-.....-+.++++++|..+|.+ ...+|.++||||-|+.||..
T Consensus 559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDae 638 (716)
T KOG0058|consen 559 RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAE 638 (716)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchh
Confidence 1 11222221 111122223466777776655555 47899999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.-..+ ...+..+.+ +.|||++.|-+.-.+-++.
T Consensus 639 SE~lV-q~aL~~~~~--~rTVlvIAHRLSTV~~Ad~ 671 (716)
T KOG0058|consen 639 SEYLV-QEALDRLMQ--GRTVLVIAHRLSTVRHADQ 671 (716)
T ss_pred hHHHH-HHHHHHhhc--CCeEEEEehhhhHhhhccE
Confidence 65555 666666665 6899999999888877776
No 412
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.10 E-value=3.2e-10 Score=123.11 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=99.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-----------------ccccccccc----ccchH---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----------------VGSFVPCDR----ASISV--- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-----------------~g~~vp~~~----~~~~~--- 698 (938)
.++..|++|.+..|++++|+|++|+||||+||++.+...--- +...+|.+. ....+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 477889999999999999999999999999999876432110 111222221 11122
Q ss_pred ----------HHHHHHhcCCchhhhh--cccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 002306 699 ----------RDCIFARVGAGDCQLR--GVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765 (938)
Q Consensus 699 ----------~d~i~~~~~~~d~~~~--~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~ 765 (938)
.-.|+.+.|++|.... ..+.++.++++.+.+... +..|.+++.||.++-+|+..+..+|..+-+ ++
T Consensus 476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkise-la 554 (593)
T COG2401 476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE-LA 554 (593)
T ss_pred HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHH-HH
Confidence 2256677777665432 234455555555555544 578899999999999999999999777655 45
Q ss_pred hcCCCeEEEEeCChHHHH
Q 002306 766 EEIRAPTLFATHFHELTA 783 (938)
Q Consensus 766 ~~~~~~~l~~TH~~el~~ 783 (938)
.+.|.|.+++||..|+.+
T Consensus 555 Re~giTlivvThrpEv~~ 572 (593)
T COG2401 555 REAGITLIVVTHRPEVGN 572 (593)
T ss_pred HHhCCeEEEEecCHHHHh
Confidence 458999999999999875
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=5.9e-10 Score=121.13 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=79.1
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh----------hhhccccccccc----ccchHHHH------
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL----------MAQVGSFVPCDR----ASISVRDC------ 701 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~----------laq~g~~vp~~~----~~~~~~d~------ 701 (938)
..+....++|.++-.+-++|+||||.||||||+.+.+-.- .-++|.|-.... +.-+++..
T Consensus 599 qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN 678 (807)
T KOG0066|consen 599 QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFN 678 (807)
T ss_pred CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcC
Confidence 3456667788777777899999999999999998643110 012333321100 11111111
Q ss_pred --------HHHhcCCchhhh-hcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002306 702 --------IFARVGAGDCQL-RGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (938)
Q Consensus 702 --------i~~~~~~~d~~~-~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (938)
-+.++|+..... -..-.++++.+....+.. .+..|+++||||||+++|...-.+++.||-+ .+-.
T Consensus 679 lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne-----y~Gg 753 (807)
T KOG0066|consen 679 LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE-----YNGG 753 (807)
T ss_pred CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh-----ccCc
Confidence 122223211100 011233445444433333 3679999999999999999877777655533 3456
Q ss_pred EEEEeCChHHH
Q 002306 772 TLFATHFHELT 782 (938)
Q Consensus 772 ~l~~TH~~el~ 782 (938)
||++|||..+.
T Consensus 754 Vi~VsHDeRLi 764 (807)
T KOG0066|consen 754 VIMVSHDERLI 764 (807)
T ss_pred EEEEeccccee
Confidence 99999996653
No 414
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.01 E-value=8.8e-10 Score=121.29 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=93.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhc------cccccccc-----ccc---------------hHHHHHHHhcC
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQV------GSFVPCDR-----ASI---------------SVRDCIFARVG 707 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~------g~~vp~~~-----~~~---------------~~~d~i~~~~~ 707 (938)
..|+++++.||||-|||||.|.+|+..-.... -+|-|+.- ..+ .+...|+..++
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~ 444 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN 444 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence 35789999999999999999999875432211 12333211 000 11123445566
Q ss_pred CchhhhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHh
Q 002306 708 AGDCQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (938)
Q Consensus 708 ~~d~~~~~~s~f~-~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~ 785 (938)
+.+-+.+....+| +|+++++.+++.+.+.+|.|||||.+-||...+..++. +++++.+..+.+.+++-||.-+..+.
T Consensus 445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vak-vIRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAK-VIRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHH-HHHHHHhhcCceEEEEecceehhhhh
Confidence 6666666777776 67888888888889999999999999999998888855 45566665789999999998776543
No 415
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.99 E-value=2.2e-09 Score=118.22 Aligned_cols=131 Identities=19% Similarity=0.160 Sum_probs=98.8
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhccc--------------------------------------c---cccc
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS--------------------------------------F---VPCD 692 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~--------------------------------------~---vp~~ 692 (938)
.+|.+++|+||||-||||-+|++++.... +.|- | +|..
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~P-NLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKP-NLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCcccc-CCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 57899999999999999999998753211 1111 0 1110
Q ss_pred -----------cccchHHHHHHHhcCCchhhhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHH
Q 002306 693 -----------RASISVRDCIFARVGAGDCQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAI 760 (938)
Q Consensus 693 -----------~~~~~~~d~i~~~~~~~d~~~~~~s~f~-~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~i 760 (938)
....+.+|.+..++++..-+.+..+.+| +|+++++.++..+.+.++.++|||++-||...+...| .+
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~a-r~ 255 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA-RV 255 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHH-HH
Confidence 0123556777888888888888888887 5777777777778899999999999999999999984 55
Q ss_pred HHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 761 CEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 761 l~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
++.|++ .+..||++.||+.+.++...
T Consensus 256 Irel~~-~~k~ViVVEHDLavLD~lsD 281 (591)
T COG1245 256 IRELAE-DGKYVIVVEHDLAVLDYLSD 281 (591)
T ss_pred HHHHhc-cCCeEEEEechHHHHHHhhh
Confidence 566775 48999999999887765444
No 416
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=2.4e-09 Score=131.97 Aligned_cols=153 Identities=16% Similarity=0.114 Sum_probs=101.9
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh---------------------Hhhhhcccccccccc--cchH
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN---------------------ILMAQVGSFVPCDRA--SISV 698 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~---------------------~~laq~g~~vp~~~~--~~~~ 698 (938)
...|.++++|++.+|+.++|+||+||||||.+-.+-.. .+..|+| .|.++.. .-++
T Consensus 1002 ~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~-lVsQEP~LF~~TI 1080 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG-LVSQEPVLFNGTI 1080 (1228)
T ss_pred CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc-eeccCchhhcccH
Confidence 45899999999999999999999999999998876211 1222333 2322221 1111
Q ss_pred HHHH------------------------HHhcC--CchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q 002306 699 RDCI------------------------FARVG--AGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 699 ~d~i------------------------~~~~~--~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~ 751 (938)
.++| ...+. ..-.+...-..+|++++|...|.++ ..+|+++||||-|+.||+.
T Consensus 1081 rENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDse 1160 (1228)
T KOG0055|consen 1081 RENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSE 1160 (1228)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhh
Confidence 1111 11110 1111111123566677666555554 7899999999999999996
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.-..+ ...++.... |.|+|+++|-+...+-||. +.-++++.+.-
T Consensus 1161 SErvV-QeALd~a~~--gRT~IvIAHRLSTIqnaD~---------I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1161 SERVV-QEALDRAME--GRTTIVIAHRLSTIQNADV---------IAVLKNGKVVE 1204 (1228)
T ss_pred hHHHH-HHHHHHhhc--CCcEEEEecchhhhhcCCE---------EEEEECCEEEe
Confidence 55444 777777764 8999999999998888887 77788887643
No 417
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=5.9e-09 Score=102.49 Aligned_cols=55 Identities=27% Similarity=0.247 Sum_probs=46.9
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 727 ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 727 ~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
+.+.+..+..-+.|||||-+||+|.-..++ .+++..+++ .|..+|++||.+-+..
T Consensus 138 ~i~~~rf~~~GiYiLDEPEa~LSp~RQlel-la~l~~la~-sGaQ~IiATHSPiLlA 192 (233)
T COG3910 138 AIFHNRFNGQGIYILDEPEAALSPSRQLEL-LAILRDLAD-SGAQIIIATHSPILLA 192 (233)
T ss_pred HHHHHHhccCceEEecCccccCCHHHHHHH-HHHHHHHHh-cCCeEEEEecChhhee
Confidence 344455788899999999999999988888 888999997 7999999999987654
No 418
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.92 E-value=3.9e-09 Score=104.89 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=90.5
Q ss_pred cEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hc--------------c
Q 002306 625 DIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QV--------------G 686 (938)
Q Consensus 625 ~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~--------------g 686 (938)
.+++.+.+..+=+ ..++.-|++++.+.|.-.+++|.|||||||+||.+++--... |. |
T Consensus 13 aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 13 AIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred eEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3666665433211 124555888888999999999999999999999986421100 00 0
Q ss_pred --ccc-------ccccc------cchHHHHHHHhcCCchh-------------hhhcccchHHHHHHHHHHHH-hCCCCc
Q 002306 687 --SFV-------PCDRA------SISVRDCIFARVGAGDC-------------QLRGVSTFMQEMLETASILK-GATDRS 737 (938)
Q Consensus 687 --~~v-------p~~~~------~~~~~d~i~~~~~~~d~-------------~~~~~s~f~~e~~~~~~il~-~a~~~s 737 (938)
+|+ +.... .++...-||. +|-.|. +.=.....+-++++...|.. ...+-.
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~mifg-V~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFG-VGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred ceeEecccccccccccccccccccccHHHHHhh-ccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccccee
Confidence 111 01111 1222222222 221111 00011223334444444444 467779
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC-hHHHHHhhh
Q 002306 738 LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF-HELTALAHE 787 (938)
Q Consensus 738 lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~-~el~~~~~~ 787 (938)
++||||.|--+|...+..+. .+++.=.+..||+++++||- -.+.....+
T Consensus 168 VLLLDEVTVDLDVlARadLL-eFlkeEce~RgatIVYATHIFDGLe~Wpth 217 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLL-EFLKEECEQRGATIVYATHIFDGLETWPTH 217 (291)
T ss_pred EEEeeeeEeehHHHHHHHHH-HHHHHHHhhcCcEEEEEeeeccchhhcchh
Confidence 99999999999998877773 33333334479999999996 456665555
No 419
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=3.7e-09 Score=115.62 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHH-Hh--CC--CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 719 FMQEMLETASIL-KG--AT--DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 719 f~~e~~~~~~il-~~--a~--~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+++++++...+. .. +. +|+++|+|||++|+|+.....+ ..++..+.+ ++++|++||++++...+++
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l-~~~l~~~~~--~~tii~isH~~~~~~~~d~ 241 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAV-GKKLKELSR--SHQVLCITHLPQVAAMADN 241 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHH-HHHHHHHhC--CCEEEEEechHHHHHhcCc
Confidence 455555544333 22 22 9999999999999999988887 555555553 6899999999988777766
No 420
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.90 E-value=1.7e-08 Score=114.55 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=98.5
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh------------cccccccccc-cc--------hH--
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ------------VGSFVPCDRA-SI--------SV-- 698 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq------------~g~~vp~~~~-~~--------~~-- 698 (938)
+..+..+++|.+..|.-++||||||||||+|||.+|++.-..+ --.|+|++.- .. .+
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 4566778999999999999999999999999999987643211 1246665531 00 00
Q ss_pred ----------------------HHHHHHhcCCch--hhhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 699 ----------------------RDCIFARVGAGD--CQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 699 ----------------------~d~i~~~~~~~d--~~~~~~s~f~-~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
...|..|.|-.| .......++| +|+++++.+.-...+|.+.||||-|+++|...-
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 113455555444 3333445555 788888887777899999999999999998544
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAH 786 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~ 786 (938)
.++ -+.+.+ .|.|.|-+.|-..|.++-+
T Consensus 607 ~~~----Yr~~r~-~giT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 607 GAL----YRKCRE-MGITFISVGHRKSLWKFHD 634 (659)
T ss_pred HHH----HHHHHH-cCCeEEEeccHHHHHhhhh
Confidence 333 344444 6999999999988877544
No 421
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=2.2e-09 Score=132.30 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=95.1
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc--------
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA-------- 694 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~-------- 694 (938)
..-+.++++=-..+|-+++|+|++||||||||+.+|+-.-+ +..-.||-+..-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 34677788766678999999999999999999998743211 112223322210
Q ss_pred -------------------cchHHHHHHHhcCCc---hhhh--hcccchHHHHHHHHHHH-HhCCCC-cEEEEeCCCCCC
Q 002306 695 -------------------SISVRDCIFARVGAG---DCQL--RGVSTFMQEMLETASIL-KGATDR-SLIIIDELGRGT 748 (938)
Q Consensus 695 -------------------~~~~~d~i~~~~~~~---d~~~--~~~s~f~~e~~~~~~il-~~a~~~-slvllDEp~~gt 748 (938)
+...++.++.-+++. |.+. .| +.++.|+++...|. ..+.+| +||+|||||+||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 112345555555543 2222 12 45667776655443 345667 999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChH--HHHHhhh
Q 002306 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHE--LTALAHE 787 (938)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~e--l~~~~~~ 787 (938)
|...+..+ ..+++.+++ .|.+||.+-|.+. +.+..|+
T Consensus 962 DsqaA~~i-~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~ 1000 (1391)
T KOG0065|consen 962 DSQAAAIV-MRFLRKLAD-TGQTILCTIHQPSIDIFEAFDE 1000 (1391)
T ss_pred cHHHHHHH-HHHHHHHHh-cCCeEEEEecCCcHHHHHHHhH
Confidence 99877766 788888998 7999999999864 4444444
No 422
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.81 E-value=3.8e-08 Score=110.16 Aligned_cols=140 Identities=17% Similarity=0.073 Sum_probs=91.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh---------hccccccccc-ccch---------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA---------QVGSFVPCDR-ASIS--------------- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la---------q~g~~vp~~~-~~~~--------------- 697 (938)
..+.+.++|.+++|.-++||||||||||+++|+++++...- +.-.|+|++. ...+
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~ 574 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQM 574 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHH
Confidence 45677889999999999999999999999999999864321 2234555543 0000
Q ss_pred ----H-------------HHHHHHhcCCchhhhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 698 ----V-------------RDCIFARVGAGDCQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 698 ----~-------------~d~i~~~~~~~d~~~~~~s~f~-~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
+ .+.|..|-|-.|-+......++ +|.++++.+.....+|...+|||-|++.++.--..|
T Consensus 575 ~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i--- 651 (728)
T KOG0064|consen 575 KRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKI--- 651 (728)
T ss_pred HhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHH---
Confidence 0 1122333332332222223334 455666666656789999999999999988644443
Q ss_pred HHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+.... .|.+.|-+||-+.+-.+-.+
T Consensus 652 -~~~ak~-~gi~llsithrpslwk~h~~ 677 (728)
T KOG0064|consen 652 -FQAAKD-AGISLLSITHRPSLWKYHTH 677 (728)
T ss_pred -HHHHHh-cCceEEEeecCccHHHHHHH
Confidence 333343 78999999999988765444
No 423
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=3.7e-08 Score=124.58 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=116.0
Q ss_pred ccEEEEccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------hhccccccccccc-
Q 002306 624 GDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------AQVGSFVPCDRAS- 695 (938)
Q Consensus 624 ~~l~i~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------aq~g~~vp~~~~~- 695 (938)
..+.++++.-.. +. .+..+..+|++|.++.|+.++|+||-|||||+||.++.+-.-. ...-.|||++..-
T Consensus 517 ~~i~i~~~sfsW-~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 517 NAIEIKNGSFSW-DS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQ 594 (1381)
T ss_pred ceEEEeeeeEec-CC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhh
Confidence 347777764332 11 1234588999999999999999999999999999987542211 1112577766521
Q ss_pred -chHHH--------------HHHHhcC---------Cchh--hhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002306 696 -ISVRD--------------CIFARVG---------AGDC--QLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGT 748 (938)
Q Consensus 696 -~~~~d--------------~i~~~~~---------~~d~--~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gt 748 (938)
-++-| ++....+ ..|. +..+-.++||++++...++++ -.+.+++|||-|.+.+
T Consensus 595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 11222 2222222 2222 222234667777666555554 6789999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 749 STYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
|.+.|..|....+..+.+ +.|+|++||..++..-+|. .--++++++..
T Consensus 675 Dahvg~~if~~ci~~~L~--~KT~ILVTHql~~L~~ad~---------Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRGLLR--GKTVILVTHQLQFLPHADQ---------IIVLKDGKIVE 722 (1381)
T ss_pred hHhhhHHHHHHHHHhhhc--CCEEEEEeCchhhhhhCCE---------EEEecCCeEec
Confidence 999999998888866654 7899999999888887877 66677777654
No 424
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.80 E-value=1.6e-08 Score=98.83 Aligned_cols=139 Identities=19% Similarity=0.133 Sum_probs=88.5
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-----------ccc---------cc---ccccc----cchH--
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----------VGS---------FV---PCDRA----SISV-- 698 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-----------~g~---------~v---p~~~~----~~~~-- 698 (938)
.++|+.+.|..++|+|.||||||||.|++++++-... .|- ++ |..+. .++.
T Consensus 31 ~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiL 110 (267)
T COG4167 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL 110 (267)
T ss_pred ceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHh
Confidence 5777778999999999999999999999987642110 000 00 11100 0000
Q ss_pred ---------------HHHHH---HhcCC-chhhhhcccchHHH-HHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 699 ---------------RDCIF---ARVGA-GDCQLRGVSTFMQE-MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 699 ---------------~d~i~---~~~~~-~d~~~~~~s~f~~e-~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
..+|| .++|+ .|...-....++.+ .++++.+.+..-+|+++|.||...++|..-+..+.
T Consensus 111 d~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~- 189 (267)
T COG4167 111 DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLI- 189 (267)
T ss_pred cchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHH-
Confidence 11232 34443 22222223334433 44555555557899999999999999999999984
Q ss_pred HHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 759 AICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
.+.-+|.++.|...|++|.+..+.+ +++.
T Consensus 190 NL~LeLQek~GiSyiYV~QhlG~iKHi~D~ 219 (267)
T COG4167 190 NLMLELQEKQGISYIYVTQHIGMIKHISDQ 219 (267)
T ss_pred HHHHHHHHHhCceEEEEechhhHhhhhccc
Confidence 4444566668999999999887664 4443
No 425
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.76 E-value=5.6e-08 Score=111.37 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=108.7
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---------------------hhhcccccccccccc------hH
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDRASI------SV 698 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------laq~g~~vp~~~~~~------~~ 698 (938)
..|++|++.+|++++|.|-=|||+|-+++.+.+..- ..+.-.|||.+...- ++
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI 354 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence 348889999999999999999999999999865311 112234566543211 11
Q ss_pred H--------------------------HHHHHhcCC-chhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 002306 699 R--------------------------DCIFARVGA-GDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTST 750 (938)
Q Consensus 699 ~--------------------------d~i~~~~~~-~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~ 750 (938)
. ++...+++. ..+.....+++|++=+|...+.+. +++|+++||||||+|.|.
T Consensus 355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV 434 (500)
T COG1129 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV 434 (500)
T ss_pred HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence 1 112222221 122334567788776666555554 789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCC-hHHHHHhhhcccccccccccceeEEEEEEEEE
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHF-HELTALAHENANEFNTKQMVGVANYHVSAHID 810 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~-~el~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 810 (938)
-....| +.++..+++ .|..+|++|-+ +|+..+||+ .--+..+.+.....
T Consensus 435 GAK~eI-y~li~~lA~-~G~ail~iSSElpEll~~~DR---------IlVm~~Gri~~e~~ 484 (500)
T COG1129 435 GAKAEI-YRLIRELAA-EGKAILMISSELPELLGLSDR---------ILVMREGRIVGELD 484 (500)
T ss_pred chHHHH-HHHHHHHHH-CCCEEEEEeCChHHHHhhCCE---------EEEEECCEEEEEec
Confidence 999999 999999998 68888887766 688889998 66667777665443
No 426
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=6.3e-08 Score=108.65 Aligned_cols=162 Identities=14% Similarity=0.065 Sum_probs=98.8
Q ss_pred cccceEeecc------Ccc-cccCCccccCCCCeEEEEEecCCCCchhhhhhhhh-hH-------hhh--hccccccc--
Q 002306 631 SRHPCVEAQD------WVN-FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV-NI-------LMA--QVGSFVPC-- 691 (938)
Q Consensus 631 ~rhp~~~~~~------~~~-~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~-~~-------~la--q~g~~vp~-- 691 (938)
..||++.... .+. .+...+.++.+...-+++.|+||+||||++|.+.. .. +-+ .+|.|.--
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhv 437 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHV 437 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhh
Confidence 4688776421 112 34444566655566789999999999999998743 10 000 01111000
Q ss_pred ---------------cc-c-cchHHHHHHHhcCCchhhh-hcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChhh
Q 002306 692 ---------------DR-A-SISVRDCIFARVGAGDCQL-RGVSTFMQEML-ETASILKGATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 692 ---------------~~-~-~~~~~d~i~~~~~~~d~~~-~~~s~f~~e~~-~~~~il~~a~~~slvllDEp~~gtd~~~ 752 (938)
.. . .-.-..+=+.++|+...+. ....++|++++ +++.+.....+|-|++|||||+-||...
T Consensus 438 d~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds 517 (582)
T KOG0062|consen 438 DFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS 517 (582)
T ss_pred hHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH
Confidence 00 0 0011223456778654443 34567776655 5566666678999999999999998865
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-HhhhcccccccccccceeEEEEE
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTA-LAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
--|+ .+.|.. -+-.|+++|||.++.. +|.. +..+.+++|.
T Consensus 518 l~AL----~~Al~~-F~GGVv~VSHd~~fi~~~c~E---------~Wvve~g~vt 558 (582)
T KOG0062|consen 518 LGAL----AKALKN-FNGGVVLVSHDEEFISSLCKE---------LWVVEDGKVT 558 (582)
T ss_pred HHHH----HHHHHh-cCCcEEEEECcHHHHhhcCce---------eEEEcCCcEE
Confidence 5555 444554 4557999999999875 6655 6666666664
No 427
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.1e-07 Score=104.50 Aligned_cols=151 Identities=19% Similarity=0.115 Sum_probs=97.7
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh--------Hh------------hhhcccccccccccchHHHH
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN--------IL------------MAQVGSFVPCDRASISVRDC 701 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~--------~~------------laq~g~~vp~~~~~~~~~d~ 701 (938)
..++.++++|.+..|+.+++.||.|+||||++|.+-.. .+ +-..-+.||++..-+ .|-
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLF--NDt 352 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF--NDT 352 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceeh--hhh
Confidence 46888999999999999999999999999999987421 11 111223566553210 011
Q ss_pred HH----------------------------HhcCCchhhhhccc--chH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 002306 702 IF----------------------------ARVGAGDCQLRGVS--TFM-QEMLETASILKGATDRSLIIIDELGRGTST 750 (938)
Q Consensus 702 i~----------------------------~~~~~~d~~~~~~s--~f~-~e~~~~~~il~~a~~~slvllDEp~~gtd~ 750 (938)
++ ..+...-+..-|.. .++ +|.++++.+.....+|+++++||-|+.||+
T Consensus 353 i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt 432 (497)
T COG5265 353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT 432 (497)
T ss_pred HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence 11 00000000001111 112 566666666656889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEE
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
..-.+| .+-+..+.. |.|++++-|-+.-.--+|. ...++++.+.
T Consensus 433 ~te~~i-q~~l~~~~~--~rttlviahrlsti~~ade---------iivl~~g~i~ 476 (497)
T COG5265 433 HTEQAI-QAALREVSA--GRTTLVIAHRLSTIIDADE---------IIVLDNGRIV 476 (497)
T ss_pred hHHHHH-HHHHHHHhC--CCeEEEEeehhhhccCCce---------EEEeeCCEEE
Confidence 999998 777777764 7889999898665544555 5556666553
No 428
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.71 E-value=7.6e-08 Score=113.23 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=56.8
Q ss_pred hcccchHHHH-HHHHHH---HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 714 RGVSTFMQEM-LETASI---LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 714 ~~~s~f~~e~-~~~~~i---l~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+...|+|++- +++..+ .+.++.+.|.||||||.||-+.|-..+ ..++..|.+ .|.+||++-|++++.+.||.
T Consensus 818 QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kL-l~VL~rLvd-~GnTViVIEHNLdVIk~AD~ 893 (935)
T COG0178 818 QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKL-LEVLHRLVD-KGNTVIVIEHNLDVIKTADW 893 (935)
T ss_pred CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecccceEeecCE
Confidence 3445777544 443322 234788899999999999999999999 888999998 79999999999988776665
No 429
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.70 E-value=4.6e-08 Score=97.52 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=95.4
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh----------------------------hhhcc---------c
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL----------------------------MAQVG---------S 687 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~----------------------------laq~g---------~ 687 (938)
+.+.++++.++|++-+++|.+|||||-..|.|+++.- .++-- |
T Consensus 22 ~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sC 101 (330)
T COG4170 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSC 101 (330)
T ss_pred eeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhh
Confidence 4467888889999999999999999999999875420 01100 1
Q ss_pred ccccccc-------------------cchH----HHHHHHhcCCchhhhhccc---ch-HHHHHHHHHHHHhCCCCcEEE
Q 002306 688 FVPCDRA-------------------SISV----RDCIFARVGAGDCQLRGVS---TF-MQEMLETASILKGATDRSLII 740 (938)
Q Consensus 688 ~vp~~~~-------------------~~~~----~d~i~~~~~~~d~~~~~~s---~f-~~e~~~~~~il~~a~~~slvl 740 (938)
.-|.+.. +++. .-.++-++|..|...--.| .+ -+|-+.+..+++.|..|.|+|
T Consensus 102 LDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLI 181 (330)
T COG4170 102 LDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLI 181 (330)
T ss_pred cChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEe
Confidence 1111110 0110 0134566676543221111 11 145556666666789999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChH-HHHHhhh
Q 002306 741 IDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE-LTALAHE 787 (938)
Q Consensus 741 lDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~e-l~~~~~~ 787 (938)
.||||+.++|.....| ..++..+.+..|.++++++||.. +.+.|++
T Consensus 182 ADEPTN~~e~~Tq~Qi-fRLLs~mNQn~~TtILL~s~Dl~~is~W~d~ 228 (330)
T COG4170 182 ADEPTNSMEPTTQAQI-FRLLSRLNQNSNTTILLISHDLQMISQWADK 228 (330)
T ss_pred ccCCCcccCccHHHHH-HHHHHHhhccCCceEEEEcccHHHHHHHhhh
Confidence 9999999999999888 77888888767899999999964 4567776
No 430
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.62 E-value=1.6e-07 Score=99.21 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=37.9
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 733 a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+.+++|||||.+++|+.....+ ..++..+.+ ++-+|++||..++...++.
T Consensus 156 ~~~~p~~ilDEvd~~LD~~~~~~l-~~~l~~~~~--~~Q~ii~Th~~~~~~~a~~ 207 (220)
T PF02463_consen 156 YKPSPFLILDEVDAALDEQNRKRL-ADLLKELSK--QSQFIITTHNPEMFEDADK 207 (220)
T ss_dssp CS--SEEEEESTTTTS-HHHHHHH-HHHHHHHTT--TSEEEEE-S-HHHHTT-SE
T ss_pred cccccccccccccccccccccccc-ccccccccc--ccccccccccccccccccc
Confidence 567889999999999999988887 566666653 5889999999998877765
No 431
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.59 E-value=1.3e-07 Score=122.95 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=56.5
Q ss_pred hhcccchHHH-HHHHHHHHHhC---CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 713 LRGVSTFMQE-MLETASILKGA---TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 713 ~~~~s~f~~e-~~~~~~il~~a---~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+..+|+|++ .+++..+.... +.+.|+||||||.||++.|-..+ ..++..|.+ .|.++|++.|++++.+.||.
T Consensus 1694 Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~L-l~~l~~L~~-~g~tvivieH~~~~i~~aD~ 1770 (1809)
T PRK00635 1694 GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSAL-LVQLRTLVS-LGHSVIYIDHDPALLKQADY 1770 (1809)
T ss_pred CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHH-HHHHHHHHh-cCCeEEEEeCCHHHHHhCCE
Confidence 3445677754 44443333332 34689999999999999999999 777888987 79999999999999888776
No 432
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.55 E-value=2.1e-07 Score=100.53 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=61.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHH---HHHHhcC-Cch-hhhhcccch-----HHHHHHH
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRD---CIFARVG-AGD-CQLRGVSTF-----MQEMLET 726 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d---~i~~~~~-~~d-~~~~~~s~f-----~~e~~~~ 726 (938)
.-++|.||||||||||+|.++...-....-..+.. ..+..+| .+...++ ..+ .+....+.+ ..+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g--~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~- 188 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG--KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM- 188 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC--EEeecchhHHHHHHHhcccccccccccccccccchHHHHHHH-
Confidence 46899999999999999999765432211111111 1111111 1211111 111 110000000 112221
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 727 ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 727 ~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
++ .+.+|+++|+|||++. ....++++.+. .|.++|++||+..+....++
T Consensus 189 --~i-~~~~P~villDE~~~~-------e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r 237 (270)
T TIGR02858 189 --LI-RSMSPDVIVVDEIGRE-------EDVEALLEALH--AGVSIIATAHGRDVEDLYKR 237 (270)
T ss_pred --HH-HhCCCCEEEEeCCCcH-------HHHHHHHHHHh--CCCEEEEEechhHHHHHHhC
Confidence 22 2368999999999742 22255666654 48999999999877665543
No 433
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=5.6e-08 Score=106.07 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=81.5
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhh--Hhhhhcccccc-----------------ccccc-------------
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN--ILMAQVGSFVP-----------------CDRAS------------- 695 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~--~~laq~g~~vp-----------------~~~~~------------- 695 (938)
+.++.+-.|+-++|+||||-|||||||.||.- .+..++-..+. ++..+
T Consensus 282 nA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q 361 (807)
T KOG0066|consen 282 NASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQ 361 (807)
T ss_pred ccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44455567899999999999999999998632 12222111100 00000
Q ss_pred ---------------------------chHHHHHHHhcCCchh-hhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCC
Q 002306 696 ---------------------------ISVRDCIFARVGAGDC-QLRGVSTFMQEMLE-TASILKGATDRSLIIIDELGR 746 (938)
Q Consensus 696 ---------------------------~~~~d~i~~~~~~~d~-~~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~ 746 (938)
-....+|++-+|.+.. ..++...|+++.+- ++.+.+...+|.|+.|||||+
T Consensus 362 ~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTN 441 (807)
T KOG0066|consen 362 IEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTN 441 (807)
T ss_pred HHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCcc
Confidence 0112345555554322 23344456666543 344444568999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+|-..... +-.||.. ...|.|+++||..+. ..|..
T Consensus 442 HLDLNAVIW----LdNYLQg-WkKTLLIVSHDQgFLD~VCtd 478 (807)
T KOG0066|consen 442 HLDLNAVIW----LDNYLQG-WKKTLLIVSHDQGFLDSVCTD 478 (807)
T ss_pred ccccceeee----hhhHHhh-hhheeEEEecccchHHHHHHH
Confidence 999754333 3455554 678999999997665 46654
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.47 E-value=8.5e-07 Score=94.22 Aligned_cols=124 Identities=16% Similarity=0.106 Sum_probs=66.6
Q ss_pred CCCCeEEEEEecCCCCchhhh-hhhhhhHhhhhcccccccccccchHHHHHHHhcCCch--hhhhc----------ccch
Q 002306 653 RGKSWFQIITGPNMGGKSTFI-RQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGD--CQLRG----------VSTF 719 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTll-r~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d--~~~~~----------~s~f 719 (938)
+..|++++|+||||+||||+. +.++...-...-+.|+..+...-.+...+ ..+|..- ....+ .+..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccCh
Confidence 467889999999999999995 54444322223334555443222222222 3333211 00100 0111
Q ss_pred HHHHHHHHHHHHh--CCCCcEEEEeCCCCCC----ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChH
Q 002306 720 MQEMLETASILKG--ATDRSLIIIDELGRGT----STYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 720 ~~e~~~~~~il~~--a~~~slvllDEp~~gt----d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~e 780 (938)
......+..++.. ..+++++++|||++++ |+.....+ ..+++.+.+ .|++++ +||+..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~-~g~tvi-~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISS-LNKVII-LTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHh-CCCEEE-EEeccc
Confidence 0001112223332 2478999999999998 55545555 667777765 477555 456543
No 435
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=7.4e-07 Score=113.05 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=99.0
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------hhcc--------cccccccc-------
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------AQVG--------SFVPCDRA------- 694 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------aq~g--------~~vp~~~~------- 694 (938)
.+.|.++++|.+.+|+.++|+|.-||||||++.++-.++-. +++| +.+|++..
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 35899999999999999999999999999999887544321 1222 34566541
Q ss_pred -cchHHH--------HHHHhc-----------CCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q 002306 695 -SISVRD--------CIFARV-----------GAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 695 -~~~~~d--------~i~~~~-----------~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~ 753 (938)
.+.+++ ..+.+. |+...+..|-+.||++++|+..+.++ ..+..+++|||.|++.|+..-
T Consensus 1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence 122221 122222 23344555667899999998777765 678899999999999999755
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.-| ...++.-- .+||||.+-|-..-.--+|+
T Consensus 1312 ~lI-Q~tIR~~F--~dcTVltIAHRl~TVmd~Dr 1342 (1381)
T KOG0054|consen 1312 ALI-QKTIREEF--KDCTVLTIAHRLNTVMDSDR 1342 (1381)
T ss_pred HHH-HHHHHHHh--cCCeEEEEeeccchhhhcCe
Confidence 444 55555433 37999999998654444555
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.28 E-value=1.4e-06 Score=93.28 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHH---hCCCC-cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH
Q 002306 720 MQEMLETASILK---GATDR-SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (938)
Q Consensus 720 ~~e~~~~~~il~---~a~~~-slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~ 782 (938)
+.+.+++..++. .+... +++++|||-.++.|.-...++ .++..+.+ .+..++++||.+.+.
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGG-GSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCc-cCCEEEEeCccchhc
Confidence 556666533332 23344 999999999999998777773 55555544 478999999998653
No 437
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.28 E-value=1.3e-06 Score=95.34 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=31.2
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC-hHHHHHh
Q 002306 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF-HELTALA 785 (938)
Q Consensus 733 a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~-~el~~~~ 785 (938)
..+|+++|+|||++++|+.....+ ++.+.+ .+ .++++||+ .++..++
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l----~~~l~~-~~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAAL----LDAIEG-RV-QTFVTTTDLADFDALW 255 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHH----HHHhhc-CC-CEEEEeCCchhccchh
Confidence 368899999999999999877665 333433 33 35555554 4444444
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.25 E-value=3.1e-06 Score=86.78 Aligned_cols=121 Identities=13% Similarity=0.060 Sum_probs=68.9
Q ss_pred EEEEEecCCCCchhhhhhhhhhHhh-hhcccccccccccchHHHHHHHhcCCchh----------hhhcccchHHHHHH-
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFARVGAGDC----------QLRGVSTFMQEMLE- 725 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~l-aq~g~~vp~~~~~~~~~d~i~~~~~~~d~----------~~~~~s~f~~e~~~- 725 (938)
+++|.||.|+|||||.-+++.-... ..-..|+..+...-.+. +.+.++|..-. .......++.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~-~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI-ENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH-HHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 3689999999999999887654332 12234444333221111 22333343211 11111122222222
Q ss_pred ----HHHHHH--hCCCCcEEEEeCCCCCCC---hhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH
Q 002306 726 ----TASILK--GATDRSLIIIDELGRGTS---TYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781 (938)
Q Consensus 726 ----~~~il~--~a~~~slvllDEp~~gtd---~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el 781 (938)
+..+.+ ...+++++++|||+..+| +.....+ ..++..+.+ .|+++|+++|....
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHH-CCCEEEEEeccccC
Confidence 111211 235789999999999998 5444444 667777776 68999999998664
No 439
>PRK13695 putative NTPase; Provisional
Probab=98.24 E-value=2.6e-06 Score=86.51 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=34.8
Q ss_pred HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 731 KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
....+++++++|||+. ++..+ ... ...+..+.+ .+.++|+++|+.....++++
T Consensus 92 ~~l~~~~~lllDE~~~-~e~~~-~~~-~~~l~~~~~-~~~~~i~v~h~~~~~~~~~~ 144 (174)
T PRK13695 92 RALEEADVIIIDEIGK-MELKS-PKF-VKAVEEVLD-SEKPVIATLHRRSVHPFVQE 144 (174)
T ss_pred hccCCCCEEEEECCCc-chhhh-HHH-HHHHHHHHh-CCCeEEEEECchhhHHHHHH
Confidence 3356899999999743 33333 223 334444444 68999999999766666665
No 440
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.18 E-value=8.3e-06 Score=81.02 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=64.1
Q ss_pred EEEEEecCCCCchhhhhhhhhhHhhh-hcccccccccccchHHHHH--HHhcCCchhhh--hccc-c-hHHHHHHHHHHH
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCI--FARVGAGDCQL--RGVS-T-FMQEMLETASIL 730 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~la-q~g~~vp~~~~~~~~~d~i--~~~~~~~d~~~--~~~s-~-f~~e~~~~~~il 730 (938)
+++|+||||+||||+++.++...... ..-.|+..+........+. +...+..+... .... . ......+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 46899999999999999987644321 1112333332221111111 11111111110 0000 1 111222333344
Q ss_pred HhCCCCcEEEEeCCCCCC----------ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChH
Q 002306 731 KGATDRSLIIIDELGRGT----------STYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gt----------d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~e 780 (938)
....++.++++||+..-. +..-...+ ..+.+.+.+ .++++++++|...
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~-~~~~vv~~~~~~~ 138 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEEL-RELLERARK-GGVTVIFTLQVPS 138 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHhc-CCceEEEEEecCC
Confidence 446788999999999543 33323333 666666554 6999999999864
No 441
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.13 E-value=7.6e-06 Score=87.36 Aligned_cols=125 Identities=18% Similarity=0.103 Sum_probs=70.2
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHh-hhhcccccccccccchHHHHHHHhcCC--chhhhhccc-----------c
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNIL-MAQVGSFVPCDRASISVRDCIFARVGA--GDCQLRGVS-----------T 718 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~-laq~g~~vp~~~~~~~~~d~i~~~~~~--~d~~~~~~s-----------~ 718 (938)
...|++++|+||+|+|||||..+++.-.. ...-+.|+..+...-.+..+ +..+|. .+.+..+.. .
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEecccccccc
Confidence 36789999999999999999999864322 23344555555433233222 233442 221111111 1
Q ss_pred hHHHHHHHHHHHH-h--CCCCcEEEEeCCCCCCChhhHHHHHHHH---HHHHHhcCCCeEEEEeCChH
Q 002306 719 FMQEMLETASILK-G--ATDRSLIIIDELGRGTSTYDGFGLAWAI---CEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 719 f~~e~~~~~~il~-~--a~~~slvllDEp~~gtd~~~~~~i~~~i---l~~l~~~~~~~~l~~TH~~e 780 (938)
....+.++...+. . ..+++++++|||+..++..+...+ ..+ +..+.+ .|+++++++|...
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~-~~~l~~l~~l~~-~g~tvllt~~~~~ 166 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDI-LNFLTEAKNLVD-LGKTILITLHPYA 166 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHH-HHHHHHHHHHHh-CCCEEEEEecCCc
Confidence 1122233322222 2 248899999999966554433333 333 344454 5889999999754
No 442
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=5.8e-06 Score=103.16 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=66.4
Q ss_pred HHhcCCchh-hhhcccchHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 703 FARVGAGDC-QLRGVSTFMQEMLETASILKGA-TD--RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 703 ~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~a-~~--~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
+..+|+... +.+..+++|++++|...+.+.. .+ +.++|||||++|||+.+...+ ..+++.+.+ .|.++|++||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L-~~~L~~L~~-~G~TVIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERL-INTLKRLRD-LGNTVIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHH-HHHHHHHHh-CCCEEEEEECC
Confidence 455666543 5677889998887776666653 34 489999999999999999998 788888876 59999999999
Q ss_pred hHHHHHhhh
Q 002306 779 HELTALAHE 787 (938)
Q Consensus 779 ~el~~~~~~ 787 (938)
++....+++
T Consensus 549 ~~~i~~aD~ 557 (924)
T TIGR00630 549 EETIRAADY 557 (924)
T ss_pred HHHHhhCCE
Confidence 988777776
No 443
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.08 E-value=7e-06 Score=102.62 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=67.5
Q ss_pred HHHhcCCchh-hhhcccchHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 702 IFARVGAGDC-QLRGVSTFMQEMLETASILKG-ATD--RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 702 i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-a~~--~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
++..+|+.+- +.+...++|++++|...+.+. +.+ +.++|||||++|||+.+...+ ..+++.+.+ .|.++|++||
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L-~~~L~~L~~-~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRL-IETLKHLRD-LGNTLIVVEH 549 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeC
Confidence 4566777653 677888898887777666665 344 389999999999999999998 788888876 6999999999
Q ss_pred ChHHHHHhhh
Q 002306 778 FHELTALAHE 787 (938)
Q Consensus 778 ~~el~~~~~~ 787 (938)
+.+....+++
T Consensus 550 ~~~~i~~aD~ 559 (943)
T PRK00349 550 DEDTIRAADY 559 (943)
T ss_pred CHHHHHhCCE
Confidence 9887777776
No 444
>PRK04296 thymidine kinase; Provisional
Probab=98.00 E-value=3.1e-05 Score=79.87 Aligned_cols=145 Identities=21% Similarity=0.195 Sum_probs=78.7
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHhhhhcc--cccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhC
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVG--SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~laq~g--~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a 733 (938)
|.+.+++||.|+||||++..++.-...+..- .+-|.-..+.+ ...+.+++|..-.. ..... ..++.+...- ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~-~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSS-DTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccc-eEeCC-hHHHHHHHHh--hC
Confidence 6799999999999999988765433222111 12222111111 22345555532110 00111 1111111111 23
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC-----------hHHHHHhhhcccccccccccceeE
Q 002306 734 TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF-----------HELTALAHENANEFNTKQMVGVAN 802 (938)
Q Consensus 734 ~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~-----------~el~~~~~~~~~~~~~~~~~~v~~ 802 (938)
.+.++|++||... ++. ..+ ..+++.+.. .|.+++++.++ .++..++|. ...++.
T Consensus 77 ~~~dvviIDEaq~-l~~---~~v-~~l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~---------V~~l~~ 141 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDK---EQV-VQLAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALADK---------VTELKA 141 (190)
T ss_pred CCCCEEEEEcccc-CCH---HHH-HHHHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcCe---------EEEeeE
Confidence 4678999999843 322 224 567777776 69999999998 344555555 444444
Q ss_pred EEEEEEEEccCCceeeeeeecCC
Q 002306 803 YHVSAHIDSTSRKLTMLYKVEPG 825 (938)
Q Consensus 803 ~~~~~~~~~~~~~~~~~ykl~~G 825 (938)
.++.+ +..-+|++|+..|
T Consensus 142 vC~~C-----g~~a~~~~r~~~~ 159 (190)
T PRK04296 142 ICVHC-----GRKATMNQRLIDG 159 (190)
T ss_pred Ecccc-----CCccceEEEEeCC
Confidence 44444 4567888888853
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.00 E-value=4.1e-05 Score=73.35 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=58.3
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccch-HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhC
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASIS-VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~-~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a 733 (938)
+..++|+||+|+||||+++.++....... ...++.++..... .......... .....+.-..........+ ..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVG----GKKASGSGELRLRLALALA-RK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhh----ccCCCCCHHHHHHHHHHHH-Hh
Confidence 46899999999999999999876443332 1122222221111 1110000000 0000111111111111112 12
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHH-----HHHHHHHhcCCCeEEEEeCC
Q 002306 734 TDRSLIIIDELGRGTSTYDGFGLAW-----AICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 734 ~~~slvllDEp~~gtd~~~~~~i~~-----~il~~l~~~~~~~~l~~TH~ 778 (938)
..++++++||+.+-.+......... ....... ..+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS-EKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh-cCCCEEEEEeCC
Confidence 3369999999999988865554422 1122222 246788888884
No 446
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.90 E-value=2.4e-05 Score=97.54 Aligned_cols=141 Identities=20% Similarity=0.236 Sum_probs=91.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH---------------------------hhhhccccc-------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------------LMAQVGSFV------- 689 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------------~laq~g~~v------- 689 (938)
.+.+|++.-+++|+++++.||.||||||||+.+++.. +.+|...-+
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 4566788778899999999999999999999986431 001100000
Q ss_pred ----------cc----ccccc----hHHHHHHHhcCCc--------hhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeC
Q 002306 690 ----------PC----DRASI----SVRDCIFARVGAG--------DCQLRGVSTFMQEMLETASILKGATDRSLIIIDE 743 (938)
Q Consensus 690 ----------p~----~~~~~----~~~d~i~~~~~~~--------d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDE 743 (938)
|+ +..+. ...|.++.-+|+. ++..+|.|. +|.+++..+=..+.+++.+.+||
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSG--GerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSG--GERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccC--cccceeeeeeeeecCcceeeeec
Confidence 10 00011 1445666666643 334444432 34444443333467999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC--hHHHHHhhh
Q 002306 744 LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF--HELTALAHE 787 (938)
Q Consensus 744 p~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~--~el~~~~~~ 787 (938)
+++|+|...+..++.+ ++.++...+.+++++-|. .+.-++.|.
T Consensus 287 ~t~GLDSsTal~iik~-lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~ 331 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKA-LRQLAHITGATALVSILQPSPEIYDLFDD 331 (1391)
T ss_pred ccccccHHHHHHHHHH-HHHHHhhhcceEEEEeccCChHHHHhhhh
Confidence 9999999999999555 455555578888888887 455566665
No 447
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.85 E-value=4.1e-05 Score=79.48 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=57.1
Q ss_pred EEEEEecCCCCchhhhhhhhhhHhhhhccccccccc-ccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCC
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR-ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~ 736 (938)
+++|+||+||||||+++.++........+..+-.+. .+.. .......+. .........+|... +..+++ .+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~---i~~aLr--~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA---LKAALR--QDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH---HHHHhc--CCc
Confidence 789999999999999998654322111111111000 0000 000000000 00011111233222 222332 479
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 737 slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+++++||+. |+. .+ ..+++. +. .|..++.++|........++
T Consensus 76 d~ii~gEir---d~e---~~-~~~l~~-a~-~G~~v~~t~Ha~~~~~~~~R 117 (198)
T cd01131 76 DVILVGEMR---DLE---TI-RLALTA-AE-TGHLVMSTLHTNSAAKTIDR 117 (198)
T ss_pred CEEEEcCCC---CHH---HH-HHHHHH-HH-cCCEEEEEecCCcHHHHHhH
Confidence 999999994 443 22 444443 34 58899999998766554444
No 448
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.85 E-value=2.9e-05 Score=85.58 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=81.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhc-------cccccccc---ccchH-----------------HHHHHHhc
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQV-------GSFVPCDR---ASISV-----------------RDCIFARV 706 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~-------g~~vp~~~---~~~~~-----------------~d~i~~~~ 706 (938)
...++++.+|.||-|||||+|++|+..-.... -+|-|+.- ....+ +..++.-+
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL 444 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPL 444 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhh
Confidence 34679999999999999999999873211111 12222211 00011 01111122
Q ss_pred CCchhhhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 707 GAGDCQLRGVSTFM-QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 707 ~~~d~~~~~~s~f~-~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
...+-+.+...+++ +|+++++.++..-.+.++.++|||-.-+|...+...+.-+-+.+.. .+.+..++.||.-.+.
T Consensus 445 ~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilh-akktafvVEhdfImaT 521 (592)
T KOG0063|consen 445 QIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILH-AKKTAFVVEHDFIMAT 521 (592)
T ss_pred hHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHh-ccchhhhhhhHHHHHH
Confidence 22333333334444 6788888888887788999999999999997776664444444444 6788899999977665
No 449
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.84 E-value=0.0001 Score=85.06 Aligned_cols=148 Identities=16% Similarity=0.072 Sum_probs=84.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccccc--ccccchHHHHHH-HhcCCchhhhh-----c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPC--DRASISVRDCIF-ARVGAGDCQLR-----G 715 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~--~~~~~~~~d~i~-~~~~~~d~~~~-----~ 715 (938)
.+.+++ +.+..|+.++|+|+||+||||++++++...- +..|.+.-. +...+. .+. ..++... +.+ .
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~ev~---e~~~~~l~~~~-l~r~v~vv~ 220 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGREVR---EFIERDLGPEG-LKRSIVVVA 220 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCccHH---HHHHhhcChhh-hcCeEEEEE
Confidence 455677 8889999999999999999999998876431 122211110 111111 111 1111100 000 0
Q ss_pred ccchHHHHHH--------HHHHHHhCCCCcEEEEe-----------------CC--CCCCChhhHHHHHHHHHHHHHh-c
Q 002306 716 VSTFMQEMLE--------TASILKGATDRSLIIID-----------------EL--GRGTSTYDGFGLAWAICEHLVE-E 767 (938)
Q Consensus 716 ~s~f~~e~~~--------~~~il~~a~~~slvllD-----------------Ep--~~gtd~~~~~~i~~~il~~l~~-~ 767 (938)
.|.-+..++. ++.-.+....+=|+++| || ++|+||.....+ ..+++.+.. .
T Consensus 221 ~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l-~~ller~~~~~ 299 (438)
T PRK07721 221 TSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL-PKLLERTGTNA 299 (438)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHHHhcCCC
Confidence 0111111111 12222223566677888 64 579999766666 788888863 2
Q ss_pred CCC-----eEEEEeCChHHHHHhhhcccccccccccceeEEEEEEE
Q 002306 768 IRA-----PTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 768 ~~~-----~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
.|. +|++.+||++- .++++ ...+.++|+...
T Consensus 300 ~GsIT~~~TVlv~~hdm~e-~i~d~---------v~~i~dG~Ivls 335 (438)
T PRK07721 300 SGSITAFYTVLVDGDDMNE-PIADT---------VRGILDGHFVLD 335 (438)
T ss_pred CCCeeeEEEEEEECCCCCc-hhhhh---------EEEecCEEEEEe
Confidence 575 89999999873 67776 666777777654
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.73 E-value=4.2e-05 Score=85.04 Aligned_cols=121 Identities=17% Similarity=0.071 Sum_probs=60.8
Q ss_pred ccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCc-hhhhhcccchHHHHHHH-HH
Q 002306 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLET-AS 728 (938)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~-~~ 728 (938)
+.+..+..++|+||+||||||+++.++...- ...+..+-.+..++.+.. -..++.. .....+.+.+ .+.+. ..
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~--~~~~~l~~ 213 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKV--TPKDLLQS 213 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEcCccccCCCC--CCEEEEEecCCCCCcCcc--CHHHHHHH
Confidence 3445788999999999999999998754221 111110000000111000 0000000 0000011111 12222 22
Q ss_pred HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 729 ILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 729 il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ...|+.+++|||.. ..+ +++++.+.. .+..++.++|........++
T Consensus 214 ~L--r~~pd~ii~gE~r~-------~e~-~~~l~a~~~-g~~~~i~T~Ha~~~~~~~~R 261 (308)
T TIGR02788 214 CL--RMRPDRIILGELRG-------DEA-FDFIRAVNT-GHPGSITTLHAGSPEEAFEQ 261 (308)
T ss_pred Hh--cCCCCeEEEeccCC-------HHH-HHHHHHHhc-CCCeEEEEEeCCCHHHHHHH
Confidence 23 36899999999974 222 456676654 33456899998776655544
No 451
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=97.67 E-value=4.8e-06 Score=97.60 Aligned_cols=214 Identities=7% Similarity=-0.133 Sum_probs=159.5
Q ss_pred EccccceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccccccc-ccchHHHHHHHhcC
Q 002306 629 EGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR-ASISVRDCIFARVG 707 (938)
Q Consensus 629 ~~~rhp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~-~~~~~~d~i~~~~~ 707 (938)
.+.+||+++....-.+.++++.+--+++.---.||++++|++|||++||.++.++++++.+|..- .+.+.-|..+ +-+
T Consensus 627 ~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~-kG~ 705 (902)
T KOG0219|consen 627 GQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQL-KGI 705 (902)
T ss_pred ccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhh-cch
Confidence 34589999865544567888877556655667999999999999999999999999999988654 3344434333 233
Q ss_pred CchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.........++++.++.....++....-.+....+|-+++....++.-++|.....+.....+-+...+|+++-++.+..
T Consensus 706 STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~ 785 (902)
T KOG0219|consen 706 STFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHV 785 (902)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhhee
Confidence 44445555667777776666666666777889999999999999999888886777655457778889999988776554
Q ss_pred cccccccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 002306 788 NANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860 (938)
Q Consensus 788 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~~ 860 (938)
...+.+-. -.-+--.|.-+.|.+-.+++.++|...-.|.+..+++.+-+++++...
T Consensus 786 ---------~a~i~~~~--------~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~~ 841 (902)
T KOG0219|consen 786 ---------TAQIENDD--------ITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVIK 841 (902)
T ss_pred ---------eeEecCcc--------hhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhhh
Confidence 33444411 112333466777888899999999999999999999999998888765
No 452
>PRK10869 recombination and repair protein; Provisional
Probab=97.64 E-value=0.00027 Score=84.59 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhC----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhccccccccc
Q 002306 721 QEMLETASILKGA----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQ 796 (938)
Q Consensus 721 ~e~~~~~~il~~a----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~ 796 (938)
|++++++.++..+ .+|+++|+|||++|+|+..+..+ ..++..+.+ ++++|++||++.++.++++
T Consensus 434 Ge~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v-~~~l~~l~~--~~qvi~iTH~~~~~~~ad~--------- 501 (553)
T PRK10869 434 GELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVV-GKLLRQLGE--STQVMCVTHLPQVAGCGHQ--------- 501 (553)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHhCCE---------
Confidence 3445555544443 36899999999999999888888 666777754 6889999999999888776
Q ss_pred ccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcC---CCHHHHHHHHHHHH
Q 002306 797 MVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFAN---FPESVVTLAREKAA 854 (938)
Q Consensus 797 ~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag---~P~~vi~rA~~~~~ 854 (938)
+..|.. ... ++.+.+-.-.| .+.-==-++|||.| +.+..++.|+++++
T Consensus 502 ~~~v~k-----~~~-~~~t~s~i~~L----~~~~R~~EiARMl~G~~~t~~~~~~A~eLl~ 552 (553)
T PRK10869 502 HFFVSK-----ETD-GGMTETHMQPL----DKKARLQELARLLGGSEVTRNTLANAKELLA 552 (553)
T ss_pred EEEEec-----ccc-CCeeeEEEEEC----ChhHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 222211 001 01122221222 22333458999984 45777888888753
No 453
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.60 E-value=0.00035 Score=84.25 Aligned_cols=110 Identities=21% Similarity=0.174 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCC----CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccc
Q 002306 722 EMLETASILKGAT----DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQM 797 (938)
Q Consensus 722 e~~~~~~il~~a~----~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~ 797 (938)
++++++.++..+. +++++|+|||++|+|+.....+ ..++..+.+ +.+||++||++.++..+++ +
T Consensus 445 e~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~-~~~l~~l~~--~~~vi~iTH~~~~~~~ad~---------~ 512 (563)
T TIGR00634 445 ELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAI-AKKLAQLSE--RHQVLCVTHLPQVAAHADA---------H 512 (563)
T ss_pred HHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHhc--CCEEEEEEChHHHHHhcCe---------E
Confidence 3444444444333 4699999999999999988888 566677764 7899999999998887766 3
Q ss_pred cceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcC---CCHHHHHHHHHHH
Q 002306 798 VGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFAN---FPESVVTLAREKA 853 (938)
Q Consensus 798 ~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag---~P~~vi~rA~~~~ 853 (938)
..+.... . ++.+.+-...| .| .-==-++|||.| +-+..++.|++++
T Consensus 513 ~~l~k~~-----~-~~~t~s~i~~L-~~---~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 513 FKVEKEG-----L-DGRTATRVRPL-SG---EERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EEEEEcc-----C-CCcEEEEEEEC-Cc---cHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 2222211 0 02223322233 22 333458899984 4566788888765
No 454
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.60 E-value=5.5e-05 Score=62.14 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.++.|+ ..|.+++|+|||||||||+|.++..+.
T Consensus 15 ~~~~~~-~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 15 ETIDFD-PRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred eEEeec-CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345554 235689999999999999999886543
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.59 E-value=3.2e-05 Score=71.15 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=29.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhh
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~ 677 (938)
.+.++++|.+.+|++++|+||+||||||+++++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3455788888899999999999999999999964
No 456
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.57 E-value=0.00028 Score=68.20 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=57.1
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhhhhc-ccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhC
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQV-GSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~laq~-g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a 733 (938)
.+..++|+||.|+||||+++.++....-.+. -.++.+....-. .......+.. ...........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~~~ 82 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG--LVVAELFGHF-------------LVRLLFELAEK 82 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh--hHHHHHhhhh-------------hHhHHHHhhcc
Confidence 4678999999999999999998764431000 011111100000 0000000000 11222233335
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh----cCCCeEEEEeCChH
Q 002306 734 TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE----EIRAPTLFATHFHE 780 (938)
Q Consensus 734 ~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~----~~~~~~l~~TH~~e 780 (938)
..+.++++||.... ++.....+ ..+++.+.. ..++.+|++|+...
T Consensus 83 ~~~~~lilDe~~~~-~~~~~~~~-~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 83 AKPGVLFIDEIDSL-SRGAQNAL-LRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEeChhhh-hHHHHHHH-HHHHHhcCceeccCCCeEEEEecCccc
Confidence 67899999998776 33333344 444444432 14788999998754
No 457
>PRK09183 transposase/IS protein; Provisional
Probab=97.54 E-value=0.00026 Score=76.59 Aligned_cols=106 Identities=17% Similarity=0.280 Sum_probs=60.4
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccc---ccccccccchHHHHHHHhcCCchhhhhcccchHHHHH
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS---FVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEML 724 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~---~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~ 724 (938)
+++| +..++.++|+||+|+|||++...+|..... .|. |+++. .++..+.... ..+ .
T Consensus 95 ~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~~~--------~l~~~l~~a~--~~~--~------ 153 (259)
T PRK09183 95 SLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTTAA--------DLLLQLSTAQ--RQG--R------ 153 (259)
T ss_pred cCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeHH--------HHHHHHHHHH--HCC--c------
Confidence 4455 467888999999999999999999764332 231 22211 1221111000 000 0
Q ss_pred HHHHHHHh-CCCCcEEEEeCCCCC-CChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 725 ETASILKG-ATDRSLIIIDELGRG-TSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 725 ~~~~il~~-a~~~slvllDEp~~g-td~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
+..++.. ...++++++||.+.. .+. ++..+...++....+ .+ .+|++|+.
T Consensus 154 -~~~~~~~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~-~~-s~iiTsn~ 205 (259)
T PRK09183 154 -YKTTLQRGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYE-KG-SMILTSNL 205 (259)
T ss_pred -HHHHHHHHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHh-cC-cEEEecCC
Confidence 1122222 357789999999864 443 344344677766554 34 57777776
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.51 E-value=0.0004 Score=74.43 Aligned_cols=121 Identities=14% Similarity=0.250 Sum_probs=65.7
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHhhhh--cc-----------cccccccccchHH---HHHHHhcCCc---hhhhh--
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQ--VG-----------SFVPCDRASISVR---DCIFARVGAG---DCQLR-- 714 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~laq--~g-----------~~vp~~~~~~~~~---d~i~~~~~~~---d~~~~-- 714 (938)
|.+.+|+||.|+|||||.-++|..+.... .| .|+..+...-.+. ..+...++.. +.+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 46789999999999999999876543211 11 1222222111122 2233333211 11100
Q ss_pred c----cc-------chHHHHHHHHHHHHhCCCCcEEEEeCCCC------CCChhhHHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 715 G----VS-------TFMQEMLETASILKGATDRSLIIIDELGR------GTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 715 ~----~s-------~f~~e~~~~~~il~~a~~~slvllDEp~~------gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
+ .. ....++..+...+. ..++.+||+| |.+ ..|+.....+ ...+..++++.|+++|+++|
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~-~~~~~lvviD-pl~~~~~~~~~d~~~~~~~-~~~L~~~a~~~g~avl~v~H 157 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLL-IRRIDLVVID-PLVSFHGVSENDNGAMDAV-IKALRRIAAQTGAAILLVHH 157 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHH-hcCCCEEEEC-ChHHhCCCCcCCHHHHHHH-HHHHHHHHHHhCCEEEEEec
Confidence 0 00 01112222222222 4689999999 654 3577666666 44555666557999999999
Q ss_pred Ch
Q 002306 778 FH 779 (938)
Q Consensus 778 ~~ 779 (938)
..
T Consensus 158 ~~ 159 (239)
T cd01125 158 VR 159 (239)
T ss_pred cC
Confidence 85
No 459
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00023 Score=80.17 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=55.3
Q ss_pred ccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh---cccccccccccchHHHHHH---HhcCCchhhhhcccchHHH
Q 002306 649 CKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---VGSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQE 722 (938)
Q Consensus 649 ~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq---~g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e 722 (938)
.++....|.+++++||||+||||++..++......+ -..++..+..+++-.+.+- ..+|..-........+
T Consensus 130 ~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l--- 206 (374)
T PRK14722 130 EDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL--- 206 (374)
T ss_pred CCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH---
Confidence 333346788999999999999999999886543322 1235556555555555432 2334321111111122
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCC
Q 002306 723 MLETASILKGATDRSLIIIDELGRG 747 (938)
Q Consensus 723 ~~~~~~il~~a~~~slvllDEp~~g 747 (938)
...+....+.++||+|+||+.
T Consensus 207 ----~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 207 ----QLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred ----HHHHHHhcCCCEEEEcCCCCC
Confidence 233444567899999999766
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.42 E-value=7.8e-05 Score=76.62 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=24.7
Q ss_pred ccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+.+..|..++|+|||||||||+++.++..
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567889999999999999999998654
No 461
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.41 E-value=0.00018 Score=82.44 Aligned_cols=131 Identities=16% Similarity=0.067 Sum_probs=72.0
Q ss_pred cccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccc--ccccccccch-HHHHHHHhcCCchh-hhhcccchHHHHHH
Q 002306 650 KLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS--FVPCDRASIS-VRDCIFARVGAGDC-QLRGVSTFMQEMLE 725 (938)
Q Consensus 650 ~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~--~vp~~~~~~~-~~d~i~~~~~~~d~-~~~~~s~f~~e~~~ 725 (938)
.+.+..|+.++|+|+||+||||++++++.... +..|. ++..+..+.. ++...+..-|.... +....+.-+..++.
T Consensus 150 ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ 228 (432)
T PRK06793 150 MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQL 228 (432)
T ss_pred cceecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHH
Confidence 47778999999999999999999999876432 11221 2222222221 11222222121111 11222333333433
Q ss_pred HHHHHH--------hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHh
Q 002306 726 TASILK--------GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (938)
Q Consensus 726 ~~~il~--------~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~ 785 (938)
.+...+ ....+-|+++|+||++.++. ..+ ...+...-. .|-+..+.||...+.+-+
T Consensus 229 ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--rei-sl~~~e~p~-~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 229 RAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSV-DIAVKELPI-GGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHH-HHHhcCCCC-CCeeeeeeccchhHHHHh
Confidence 322222 23678999999999999985 444 223344443 367777778865555433
No 462
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.37 E-value=0.0005 Score=78.02 Aligned_cols=151 Identities=14% Similarity=0.072 Sum_probs=99.5
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------------------hccccccccccc------ch
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------QVGSFVPCDRAS------IS 697 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------------------q~g~~vp~~~~~------~~ 697 (938)
..+++|++..|++++|.|-.|-|-+.|+..++++...+ ....|||.+... ++
T Consensus 274 v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~s 353 (501)
T COG3845 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLS 353 (501)
T ss_pred eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCcc
Confidence 45799999999999999999999999999987653111 122467765421 22
Q ss_pred HHHH----------------------------HHHhcCCc-hhhhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCC
Q 002306 698 VRDC----------------------------IFARVGAG-DCQLRGVSTFMQEMLE-TASILKGATDRSLIIIDELGRG 747 (938)
Q Consensus 698 ~~d~----------------------------i~~~~~~~-d~~~~~~s~f~~e~~~-~~~il~~a~~~slvllDEp~~g 747 (938)
+.++ +..++... .+......++|++-+| +.-......+|+|+|+.+||+|
T Consensus 354 l~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrG 433 (501)
T COG3845 354 LAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRG 433 (501)
T ss_pred HHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCcc
Confidence 2222 12222211 1122223455555444 3334445789999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCeEEEEeCC-hHHHHHhhhcccccccccccceeEEEEEE
Q 002306 748 TSTYDGFGLAWAICEHLVEEIRAPTLFATHF-HELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~~~~~~~~l~~TH~-~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
+|......|...+++ .++ .|+.||+++-+ .|+..++|+ ...+.++.+.-
T Consensus 434 LDvgA~~~I~~~l~e-~r~-~G~AVLLiS~dLDEil~lsDr---------IaVi~~Gri~~ 483 (501)
T COG3845 434 LDVGAIEFIHERLLE-LRD-AGKAVLLISEDLDEILELSDR---------IAVIYEGRIVG 483 (501)
T ss_pred ccHHHHHHHHHHHHH-HHh-cCCEEEEEehhHHHHHHhhhe---------eeeeeCCceec
Confidence 999877777555555 454 69999998888 467789998 65555555543
No 463
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.32 E-value=0.00046 Score=80.28 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=53.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhc---ccccccccccchHHHHHH---HhcCCchhhhhcccchHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQV---GSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLETA 727 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~---g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 727 (938)
+.|.+++++||||+||||++..++......+. -.+++++..+++..+.+- ..+|..-...... .+..
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~-------~Dl~ 326 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDA-------ADLR 326 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCc-------hhHH
Confidence 45789999999999999999999875544321 236777776666665442 2233211111111 1112
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 002306 728 SILKGATDRSLIIIDELGRG 747 (938)
Q Consensus 728 ~il~~a~~~slvllDEp~~g 747 (938)
..+..+.+..++++|.+|++
T Consensus 327 ~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHHhccCCCeEEeCCCCcC
Confidence 23334566789999998765
No 464
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.28 E-value=0.0005 Score=72.26 Aligned_cols=34 Identities=6% Similarity=-0.146 Sum_probs=28.5
Q ss_pred hCCCCcEEEEeCCC-----CCCChhhHHHHHHHHHHHHHh
Q 002306 732 GATDRSLIIIDELG-----RGTSTYDGFGLAWAICEHLVE 766 (938)
Q Consensus 732 ~a~~~slvllDEp~-----~gtd~~~~~~i~~~il~~l~~ 766 (938)
.+.+|+++++|||+ .|+||.....+ ..++..+++
T Consensus 167 l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~-~~~~~~~~~ 205 (215)
T PTZ00132 167 LTNDPNLVFVGAPALAPEEIQIDPELVAQA-EKELQAAAN 205 (215)
T ss_pred HhhcccceecCCcccCCCccccCHHHHHHH-HHHHHHHhh
Confidence 36789999999999 99999988887 677776654
No 465
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.00087 Score=76.78 Aligned_cols=91 Identities=15% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhh---hcccccccccccchHHHHHH---HhcCCchhhhhcccchHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMA---QVGSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLETA 727 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~la---q~g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 727 (938)
..|++++++||||+||||+++.++...++. .-+.++.++..+++.++.+- ..+|..-...... . +..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~----~---dl~ 261 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDI----A---DLQ 261 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCH----H---HHH
Confidence 467899999999999999999988754332 23345666666666665432 2334321111111 1 123
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhH
Q 002306 728 SILKGATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 728 ~il~~a~~~slvllDEp~~gtd~~~~ 753 (938)
..+....+.+++++|.+ |..+.+.
T Consensus 262 ~al~~l~~~d~VLIDTa--Grsqrd~ 285 (420)
T PRK14721 262 LMLHELRGKHMVLIDTV--GMSQRDQ 285 (420)
T ss_pred HHHHHhcCCCEEEecCC--CCCcchH
Confidence 34445678899999986 5555544
No 466
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.00081 Score=68.95 Aligned_cols=114 Identities=23% Similarity=0.311 Sum_probs=64.4
Q ss_pred CCeE-EEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHH------------HHhcCCchhhhhcccchHH
Q 002306 655 KSWF-QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCI------------FARVGAGDCQLRGVSTFMQ 721 (938)
Q Consensus 655 ~~~~-~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i------------~~~~~~~d~~~~~~s~f~~ 721 (938)
.|.. ++|+||.++||||+||-+|.+.-..-- .|.|-.-..+.--..| -.|+...|.-. .+.-|
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~-~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cp--k~~gm- 210 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN-QFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCP--KAEGM- 210 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhcccc-ccCCceEEEEeccchhhccccCCchhhhhhhhhhcccch--HHHHH-
Confidence 4555 889999999999999999875433211 2333221111100011 11122111111 11111
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 722 EMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 722 e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+++ ...|.++++||.|+-.|. .|+++.+. .|..++.+-|=.++.++..+
T Consensus 211 -----mmaIr-sm~PEViIvDEIGt~~d~-------~A~~ta~~--~GVkli~TaHG~~iedl~kr 261 (308)
T COG3854 211 -----MMAIR-SMSPEVIIVDEIGTEEDA-------LAILTALH--AGVKLITTAHGNGIEDLIKR 261 (308)
T ss_pred -----HHHHH-hcCCcEEEEeccccHHHH-------HHHHHHHh--cCcEEEEeeccccHHHhhcC
Confidence 11222 357899999999988775 34455554 48999999998777666554
No 467
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.24 E-value=0.00058 Score=75.69 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 721 QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 721 ~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+|+++.+.++......++.++|||-+-+|...+...| ..++.+.. ...-++++-||+.+..+...
T Consensus 217 gelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA-~~IRsl~~-p~~YiIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 217 GELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA-ITIRSLIN-PDRYIIVVEHDLSVLDYLSD 281 (592)
T ss_pred chhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH-HHHHHhhC-CCCeEEEEEeechHHHhhhc
Confidence 4566666666667788999999999999999888874 44555655 67889999999998876554
No 468
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.24 E-value=0.00084 Score=64.18 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=53.7
Q ss_pred EEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCcE
Q 002306 659 QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSL 738 (938)
Q Consensus 659 ~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~sl 738 (938)
++|+||.|+||||+.+.++... |. |. ..+ ...+............+..+..-......|.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~--~~--~~i----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GF--PF--IEI----------DGSELISSYAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TS--EE--EEE----------ETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cc--cc--ccc----------ccccccccccccccccccccccccccccccee
Confidence 5799999999999999987632 21 10 000 00000100111112222222222222224899
Q ss_pred EEEeCCCCCCChh------hHHHHHHHHHHHHHhcC----CCeEEEEeCChH
Q 002306 739 IIIDELGRGTSTY------DGFGLAWAICEHLVEEI----RAPTLFATHFHE 780 (938)
Q Consensus 739 vllDEp~~gtd~~------~~~~i~~~il~~l~~~~----~~~~l~~TH~~e 780 (938)
+++||.-.-.... ....+...++..+.... +..+|++|++.+
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~ 113 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD 113 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChh
Confidence 9999976544332 23344456666665422 357788888854
No 469
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.00062 Score=82.76 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=60.1
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhc---ccccccccccchHHHHHH---HhcCCchhhhhcccchH
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV---GSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFM 720 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~---g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~ 720 (938)
++.++....|++++++||||+||||.+..++......+. -.++.++..+++..+.+- ..+|..-....
T Consensus 176 ~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~------ 249 (767)
T PRK14723 176 RDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK------ 249 (767)
T ss_pred cCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC------
Confidence 345554456889999999999999999998875433221 245677777766666543 23343211111
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 002306 721 QEMLETASILKGATDRSLIIIDELGRGT 748 (938)
Q Consensus 721 ~e~~~~~~il~~a~~~slvllDEp~~gt 748 (938)
.-.++..++..+.+.++||+|=+|+.=
T Consensus 250 -~~~~l~~al~~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 250 -DAADLRFALAALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred -CHHHHHHHHHHhcCCCEEEEeCCCCCc
Confidence 122344555556677999999988653
No 470
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.22 E-value=0.0018 Score=70.43 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+||||+||||+++.++.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 44899999999999999998754
No 471
>PRK06893 DNA replication initiation factor; Validated
Probab=97.22 E-value=0.00094 Score=71.03 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=56.3
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCC
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT 734 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~ 734 (938)
+..+.|.||.|+|||+|++.+|.-..... -..|++.... ..+. ..++....
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------------------~~~~------~~~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------------------QYFS------PAVLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------------------hhhh------HHHHhhcc
Confidence 35689999999999999999986433221 1123332110 0000 12233345
Q ss_pred CCcEEEEeCCCCCC-ChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 735 DRSLIIIDELGRGT-STYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 735 ~~slvllDEp~~gt-d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
+.+++++||+.... +......+ ..++..+.+ .|.+++++|++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l-~~l~n~~~~-~~~~illits~~ 134 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAI-FDLFNRIKE-QGKTLLLISADC 134 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHH-HHHHHHHHH-cCCcEEEEeCCC
Confidence 77899999998865 33223344 677777765 466666666653
No 472
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.20 E-value=0.0011 Score=70.74 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=65.6
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh-------hcccccccccc-cchHHHHHHHhcCCc-hhhhhcc-----c-
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------QVGSFVPCDRA-SISVRDCIFARVGAG-DCQLRGV-----S- 717 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la-------q~g~~vp~~~~-~~~~~d~i~~~~~~~-d~~~~~~-----s- 717 (938)
+..|+++.|+||+|+||||++.+++...... ....|+-.+.. ....+..+....+.. +...... .
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 4578999999999999999999997654332 12223333221 111222333333321 1110000 0
Q ss_pred --chHHHHHHHHHHHHhCCCCcEEEEeCCCCCC----Ch----hhHHHHHH---HHHHHHHhcCCCeEEEEeCCh
Q 002306 718 --TFMQEMLETASILKGATDRSLIIIDELGRGT----ST----YDGFGLAW---AICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 718 --~f~~e~~~~~~il~~a~~~slvllDEp~~gt----d~----~~~~~i~~---~il~~l~~~~~~~~l~~TH~~ 779 (938)
.+..-+.++...+....++.+|++|-.++=. +. .++..... ..++.++++.++++|+++|-.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 1111122233333333378999999987521 11 22322222 334445555799999998753
No 473
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.20 E-value=0.0013 Score=75.38 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..++-++|.||+|+||||+.|.++.
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455689999999999999999876
No 474
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.20 E-value=0.0035 Score=66.62 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=63.9
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhh-hhcccccccccccchHHHHHHHhcCC-------------chhhhhc---
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFARVGA-------------GDCQLRG--- 715 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~l-aq~g~~vp~~~~~~~~~d~i~~~~~~-------------~d~~~~~--- 715 (938)
+..|++++|.||+|+|||||..+++.-... ..-+.|+..+...-.+..+ ...+|. .|.....
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~~~ 95 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEKED 95 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccccc
Confidence 467899999999999999999987643221 1223344332211111111 112221 1111000
Q ss_pred ---ccchH-HHH-HHHHHHHHhC-CCCcEEEEeCCCCCC--ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChH
Q 002306 716 ---VSTFM-QEM-LETASILKGA-TDRSLIIIDELGRGT--STYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 716 ---~s~f~-~e~-~~~~~il~~a-~~~slvllDEp~~gt--d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~e 780 (938)
...+. .++ .++..+.... ..++++++|-|+.=. +|.....+.+.+...+.+ .|+++++++|...
T Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~-~~~tvil~~~~~~ 167 (229)
T TIGR03881 96 EWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNR-WNFTILLTSQYAI 167 (229)
T ss_pred ccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHh-CCCEEEEEecccc
Confidence 00011 111 1222233222 246788888876532 333333444566666665 7999999999643
No 475
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.20 E-value=0.00081 Score=75.96 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=56.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHH-HHHHHhcCCchhhhhcccchHHHHHHHHHHHHh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVR-DCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~-d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 732 (938)
..+.+++|+||+||||||+|+.+.........+..+-.+.. +... ......+. ...+....-+|... +..+++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp-~E~~~~~~~~~i~-q~evg~~~~~~~~~---l~~~lr- 193 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP-IEYVHRNKRSLIN-QREVGLDTLSFANA---LRAALR- 193 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC-hhhhccCccceEE-ccccCCCCcCHHHH---HHHhhc-
Confidence 34678999999999999999987542211111211111110 0000 00000000 00011111123211 222333
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 733 a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
.+|+++++||+. |+.... ..++. +. .|..++.++|-.....
T Consensus 194 -~~pd~i~vgEir---d~~~~~----~~l~a-a~-tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 194 -EDPDVILIGEMR---DLETVE----LALTA-AE-TGHLVFGTLHTNSAAQ 234 (343)
T ss_pred -cCCCEEEEeCCC---CHHHHH----HHHHH-HH-cCCcEEEEEcCCCHHH
Confidence 699999999994 554332 23333 33 5889999999754443
No 476
>PRK06526 transposase; Provisional
Probab=97.16 E-value=0.0017 Score=69.95 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=58.3
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCC
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT 734 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~ 734 (938)
.++-++|+||.|+|||++...++.-.. +.|.-|- +.-...++..+.... ...++ ...+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v~-----f~t~~~l~~~l~~~~----~~~~~-------~~~l~~l~ 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRVL-----FATAAQWVARLAAAH----HAGRL-------QAELVKLG 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH--HCCCchh-----hhhHHHHHHHHHHHH----hcCcH-------HHHHHHhc
Confidence 455689999999999999999875332 2232211 111122333322110 00111 12233345
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 735 ~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
++++||+||++.---......+...++..-.+ . ..+|++|+..
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~-~-~s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYE-R-ASLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHh-c-CCEEEEcCCC
Confidence 78999999998653223344444667665444 2 4588888873
No 477
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.0029 Score=68.56 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=51.0
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhh-hhcccccccccccchHHHHHHHh---cCCchhhhhcccchHHHHHHHHHHH
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFAR---VGAGDCQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~l-aq~g~~vp~~~~~~~~~d~i~~~---~~~~d~~~~~~s~f~~e~~~~~~il 730 (938)
++..++++||||+||||+++.++..... .....++-+...+++.+.++-+. ++..-..... ...+.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~----~~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCC----HHHHHHHHHHH
Confidence 5689999999999999999998764321 11223455555555555554333 2211100001 11222221222
Q ss_pred HhCCCCcEEEEeCCCCCC
Q 002306 731 KGATDRSLIIIDELGRGT 748 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gt 748 (938)
....+.++||+|-||+.-
T Consensus 150 ~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 150 KEEARVDYILIDTAGKNY 167 (270)
T ss_pred HhcCCCCEEEEECCCCCc
Confidence 223467999999999874
No 478
>PRK03918 chromosome segregation protein; Provisional
Probab=97.12 E-value=0.00096 Score=85.35 Aligned_cols=53 Identities=23% Similarity=0.156 Sum_probs=43.4
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 733 a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.+|+++|||||++|+|+.....+ ..++..+.. .+.++|++||++++...+++
T Consensus 810 ~~~~~~lilDEp~~~lD~~~~~~l-~~~l~~~~~-~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 810 AGNIPLLILDEPTPFLDEERRRKL-VDIMERYLR-KIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCCCCeEEEeCCCcccCHHHHHHH-HHHHHHHHh-cCCEEEEEECCHHHHHhCCe
Confidence 578999999999999999888888 445555555 46789999999988777765
No 479
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.12 E-value=0.003 Score=71.82 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=64.8
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh-hcccccccccccchHHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la-q~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (938)
+.+|.+++|.||+|+|||||+.+++...... .-..|+..+.. ...+..-..++|.. +++.....+. +.++...+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~~---le~I~~~i 154 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAETN---LEDILASI 154 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccCc---HHHHHHHH
Confidence 3568999999999999999999987543221 12234444332 11122223456642 2221111111 22232333
Q ss_pred HhCCCCcEEEEeCCCC----CCC--h---hhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 731 KGATDRSLIIIDELGR----GTS--T---YDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 731 ~~a~~~slvllDEp~~----gtd--~---~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
. ..++++|++|+... ..| + ..-..++..+.+ ++++.+++++++.|-
T Consensus 155 ~-~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~-lak~~~itvilvghv 209 (372)
T cd01121 155 E-ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMR-FAKERNIPIFIVGHV 209 (372)
T ss_pred H-hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHH-HHHHcCCeEEEEeec
Confidence 2 35889999999732 221 1 112233233444 444479999999885
No 480
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0066 Score=68.35 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=49.4
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHhhhhcc---cccccccccchHHHHHHH---hcCCchhhhhcccchHHHHHHHHHH
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCIFA---RVGAGDCQLRGVSTFMQEMLETASI 729 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~laq~g---~~vp~~~~~~~~~d~i~~---~~~~~d~~~~~~s~f~~e~~~~~~i 729 (938)
+.+++|+||||+||||++..+|.... .-| .++-++..+++.++.+-+ .+|..-..... ..++.+....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d----~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCC----HHHHHHHHHH
Confidence 46899999999999999999986332 222 245555555555555443 23321110000 1222222112
Q ss_pred HHhCCCCcEEEEeCCCCCCC
Q 002306 730 LKGATDRSLIIIDELGRGTS 749 (938)
Q Consensus 730 l~~a~~~slvllDEp~~gtd 749 (938)
+....+.++||+|-||+.-.
T Consensus 315 lk~~~~~DvVLIDTaGRs~k 334 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYR 334 (436)
T ss_pred HHhccCCCEEEEeCccccCc
Confidence 22223579999999988553
No 481
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0045 Score=72.21 Aligned_cols=87 Identities=20% Similarity=0.294 Sum_probs=52.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhh---cccccccccccchHHHHHHHh---cCCchhhhhcccchHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQ---VGSFVPCDRASISVRDCIFAR---VGAGDCQLRGVSTFMQEMLETA 727 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq---~g~~vp~~~~~~~~~d~i~~~---~~~~d~~~~~~s~f~~e~~~~~ 727 (938)
..|++++|+||+|+||||++..++......+ -..++..+..+++-.+.+... +|.. .... .....+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~----v~~a---~d~~~L~ 420 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIA----VHEA---DSAESLL 420 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCce----eEec---CcHHHHH
Confidence 4578999999999999999998876443322 223555555455444444322 1210 0000 0112334
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 002306 728 SILKGATDRSLIIIDELGRG 747 (938)
Q Consensus 728 ~il~~a~~~slvllDEp~~g 747 (938)
.++....+.++||+|.||.+
T Consensus 421 ~aL~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 421 DLLERLRDYKLVLIDTAGMG 440 (559)
T ss_pred HHHHHhccCCEEEecCCCcc
Confidence 45555567899999999876
No 482
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.07 E-value=0.00097 Score=80.80 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=49.4
Q ss_pred ccchHHHHHHHHHHHHh-C----------CCCcEEEEeCCC-CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 716 VSTFMQEMLETASILKG-A----------TDRSLIIIDELG-RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 716 ~s~f~~e~~~~~~il~~-a----------~~~slvllDEp~-~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
..++|+++++...+... + .+|+++|||||+ +|+|+.....+ ..++..+ . |.++|++||++++..
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~-~~~l~~~-~--~~~iiiish~~~~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKAL-LSILDSL-K--DTNVFVISHKDHDPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHH-HHHHHhC-C--CCeEEEEECchhchh
Confidence 34566666554444322 1 489999999998 78999887777 5566655 3 788999999988777
Q ss_pred Hhhh
Q 002306 784 LAHE 787 (938)
Q Consensus 784 ~~~~ 787 (938)
.+++
T Consensus 542 ~~d~ 545 (562)
T PHA02562 542 KFDR 545 (562)
T ss_pred hhhc
Confidence 7766
No 483
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.06 E-value=0.0028 Score=73.47 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=50.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHh-hh--hcccccccccccchHHHHHH---HhcCCchhhhhcccchHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNIL-MA--QVGSFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLETA 727 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~-la--q~g~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 727 (938)
..+++++++||+|+||||++-.+|.... .. .-..++.++..+.+..+.+. ..+|..-..... ..++.
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~-------~~~l~ 291 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD-------PKELA 291 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC-------HHhHH
Confidence 4577999999999999999988776443 21 12235555554444333332 223321111111 12333
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 002306 728 SILKGATDRSLIIIDELGRG 747 (938)
Q Consensus 728 ~il~~a~~~slvllDEp~~g 747 (938)
..+....+.++||+|.||+.
T Consensus 292 ~~l~~~~~~DlVlIDt~G~~ 311 (424)
T PRK05703 292 KALEQLRDCDVILIDTAGRS 311 (424)
T ss_pred HHHHHhCCCCEEEEeCCCCC
Confidence 44444567899999999874
No 484
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.06 E-value=0.0011 Score=86.00 Aligned_cols=71 Identities=18% Similarity=-0.042 Sum_probs=53.5
Q ss_pred hhcccchHHHHHHHHHHHH-hC----------CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH
Q 002306 713 LRGVSTFMQEMLETASILK-GA----------TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781 (938)
Q Consensus 713 ~~~~s~f~~e~~~~~~il~-~a----------~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el 781 (938)
.....++|+++.....+.. .+ .+|+++|||||+.|+|+.....+ ..++..+.. .|++|+++||++++
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~l~~-~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRA-IGILDAIRE-GSKMIGIISHVPEF 1022 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCcHHH
Confidence 3456778887766544332 22 26899999999999999777666 777788876 68999999999988
Q ss_pred HHHh
Q 002306 782 TALA 785 (938)
Q Consensus 782 ~~~~ 785 (938)
....
T Consensus 1023 ~~~~ 1026 (1042)
T TIGR00618 1023 RERI 1026 (1042)
T ss_pred HHhh
Confidence 7533
No 485
>PRK06921 hypothetical protein; Provisional
Probab=97.05 E-value=0.0025 Score=69.25 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=59.8
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhhh--hcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILMA--QVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~la--q~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 732 (938)
.+..++++||.|+|||.|+.+++.-..-. .-..|+++. .++..+.. .| ......+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~--------~l~~~l~~---------~~----~~~~~~~~~ 174 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV--------EGFGDLKD---------DF----DLLEAKLNR 174 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH--------HHHHHHHH---------HH----HHHHHHHHH
Confidence 35678999999999999999988744321 122344431 12221100 01 011223444
Q ss_pred CCCCcEEEEeCCCC---CCC--hhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 733 ATDRSLIIIDELGR---GTS--TYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 733 a~~~slvllDEp~~---gtd--~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
..+.+|||||+.+. |.. +.........++.+... .+.++|++|+.
T Consensus 175 ~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~-~~k~tIitsn~ 224 (266)
T PRK06921 175 MKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYL-NHKPILISSEL 224 (266)
T ss_pred hcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHH-CCCCEEEECCC
Confidence 56789999999955 542 11222333677776655 46788999987
No 486
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.05 E-value=0.00026 Score=80.94 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=29.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhh
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIR 674 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr 674 (938)
.+..++++++.+|++++|+||+||||||+||
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 5678999999999999999999999999999
No 487
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.02 E-value=0.0012 Score=63.27 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhhh-----h---cccccccccccchHHHHHHHhcCCchhhhhcccchHHHH-HH
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILMA-----Q---VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM-LE 725 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~la-----q---~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~-~~ 725 (938)
.+++++|+||.|+||||+++.++.-.... + +....|.....-.++..++..++..... .....++ ..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHH
Confidence 46789999999999999999987643221 1 1112222222234555666666643222 0111222 23
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 726 TASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 726 ~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
+...+... ...+|++||.-. +. . ... ...+..+.+..+..++++-+.
T Consensus 79 ~~~~l~~~-~~~~lviDe~~~-l~--~-~~~-l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRR-RVVLLVIDEADH-LF--S-DEF-LEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHC-TEEEEEEETTHH-HH--T-HHH-HHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhc-CCeEEEEeChHh-cC--C-HHH-HHHHHHHHhCCCCeEEEEECh
Confidence 33344332 226999999744 31 2 222 334455555567777777654
No 488
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.01 E-value=0.0032 Score=73.55 Aligned_cols=120 Identities=16% Similarity=0.098 Sum_probs=66.3
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhh-hhcccccccccccchHHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~l-aq~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (938)
+..|.++.|.||.|+|||||+.+++..... ..-..|+..+...-. +..-..++|.. +++.....+ .+.++...+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~q-i~~ra~rlg~~~~~l~~~~e~---~l~~i~~~i 152 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQ-IKLRAERLGLPSDNLYLLAET---NLEAILATI 152 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHH-HHHHHHHcCCChhcEEEeCCC---CHHHHHHHH
Confidence 356889999999999999999998764432 122355554432211 22224556642 121111011 122232233
Q ss_pred HhCCCCcEEEEeCCCCCCC------h---hhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 731 KGATDRSLIIIDELGRGTS------T---YDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gtd------~---~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
. ..++++|++|++..-.. + ..-..++..+.+... +.++++++++|-
T Consensus 153 ~-~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak-~~~itvilv~hv 207 (446)
T PRK11823 153 E-EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK-QRGIAVFLVGHV 207 (446)
T ss_pred H-hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeec
Confidence 2 24789999999864322 1 112233334444444 479999999994
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.01 E-value=0.0039 Score=72.86 Aligned_cols=121 Identities=14% Similarity=0.062 Sum_probs=65.4
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh-hcccccccccccchHHHHHHHhcCCch-hhhhcccchHHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAGD-CQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la-q~g~~vp~~~~~~~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il 730 (938)
+.+|++++|.|++|+|||||+.+++...... .-..|+-.+... ..+..-..++|... ++..-..+ .+.++...+
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~-~qi~~ra~rlg~~~~~l~~~~e~---~~~~I~~~i 166 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL-QQIKMRAIRLGLPEPNLYVLSET---NWEQICANI 166 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH-HHHHHHHHHcCCChHHeEEcCCC---CHHHHHHHH
Confidence 4678999999999999999999986543221 122355443321 11111224555421 11111111 122333333
Q ss_pred HhCCCCcEEEEeCCCCCCC---------hhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 731 KGATDRSLIIIDELGRGTS---------TYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gtd---------~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
. ..+++++++|....=.. ..+-..++..+.+ ++++.|+++++++|..
T Consensus 167 ~-~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~-~ak~~giTvllt~hvt 222 (454)
T TIGR00416 167 E-EENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMR-LAKTRGIAIFIVGHVT 222 (454)
T ss_pred H-hcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHH-HHHHhCCEEEEEeccc
Confidence 3 35789999998754221 1122233233444 4444799999999963
No 490
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.01 E-value=0.0041 Score=65.81 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=64.8
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-------cccccccccc-cchHHHHHHHhcCCch-hhhhcc-----cc
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------VGSFVPCDRA-SISVRDCIFARVGAGD-CQLRGV-----ST 718 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-------~g~~vp~~~~-~~~~~d~i~~~~~~~d-~~~~~~-----s~ 718 (938)
...|+++.|+||+|+||||++.+++....... ...|+..+.. ....+.++....+... ...... .+
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence 45789999999999999999999876654332 2234433321 1122223333332210 011110 11
Q ss_pred hHHHHHHH-HHHHH--hCCCCcEEEEeCCCCCCC--------hhhHHHHHH---HHHHHHHhcCCCeEEEEeCCh
Q 002306 719 FMQEMLET-ASILK--GATDRSLIIIDELGRGTS--------TYDGFGLAW---AICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 719 f~~e~~~~-~~il~--~a~~~slvllDEp~~gtd--------~~~~~~i~~---~il~~l~~~~~~~~l~~TH~~ 779 (938)
..++... ..+.. ...+.++|++|-...=.. ..++..... ..+..++.+.++++|+++|-.
T Consensus 96 -~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~ 169 (226)
T cd01393 96 -GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR 169 (226)
T ss_pred -HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence 1222221 11211 135778999998764211 112222212 334555555799999999864
No 491
>PRK01156 chromosome segregation protein; Provisional
Probab=97.01 E-value=0.0016 Score=83.28 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=51.2
Q ss_pred cccchHHHHHHHHHH-------HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH-HHhcCC-CeEEEEeCChHHHHHh
Q 002306 715 GVSTFMQEMLETASI-------LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH-LVEEIR-APTLFATHFHELTALA 785 (938)
Q Consensus 715 ~~s~f~~e~~~~~~i-------l~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~-l~~~~~-~~~l~~TH~~el~~~~ 785 (938)
+...+|+++++...+ ...+.+|++++|||||+|+|+.....+ ..++.. +....+ .++|++||++++...|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l-~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNL-KDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 345667666555432 223578999999999999999988887 444443 443223 4799999999988877
Q ss_pred hh
Q 002306 786 HE 787 (938)
Q Consensus 786 ~~ 787 (938)
++
T Consensus 877 d~ 878 (895)
T PRK01156 877 DV 878 (895)
T ss_pred Ce
Confidence 76
No 492
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.00 E-value=0.0025 Score=65.67 Aligned_cols=125 Identities=16% Similarity=0.218 Sum_probs=59.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhh--cc---------cccccccccchHHHHHHHhcCCc---hh--hhh---
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--VG---------SFVPCDRASISVRDCIFARVGAG---DC--QLR--- 714 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq--~g---------~~vp~~~~~~~~~d~i~~~~~~~---d~--~~~--- 714 (938)
..|.+++|+||.|+||||++-+++.-....+ .| .|+..+...-.+..++....+.. +. ...
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccc
Confidence 4688999999999999999999876554321 11 22222222112222221111111 00 000
Q ss_pred -----------cccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCC--hhhHHH--HHHHHHHHHHhcCCCeEEEEeCC
Q 002306 715 -----------GVSTFMQEMLETASILKGATDRSLIIIDELGRGTS--TYDGFG--LAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 715 -----------~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd--~~~~~~--i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
+.......+.++...+....++++|++|=..+-++ ..+..+ -....++.++++.|++++++.|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 188 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHT 188 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 00012234555666666556799999995544333 222222 12445555655578999888885
No 493
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.00 E-value=0.00029 Score=73.14 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.2
Q ss_pred EEEEEecCCCCchhhhhhhhhhH
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~ 680 (938)
+++|+||+||||||+.+.+..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999987653
No 494
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.99 E-value=0.0025 Score=69.57 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.0
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
....|++++|.||+|+||||++.+++...
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999987644
No 495
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0074 Score=68.79 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=51.2
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhhhh--cc---cccccccccchHHHHHH---HhcCCchhhhhcccchHHHHHHH
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQ--VG---SFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLET 726 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~laq--~g---~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~ 726 (938)
.+.+++++||||+||||.+.-+|....+.. -| .++-++..+.+-.+.+- ..+|.. +.. ...+ ..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~~-~~~~----~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VKA-IESF----KDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eEe-eCcH----HHH
Confidence 356999999999999999988875443321 12 24445544444444432 223432 111 1111 223
Q ss_pred HHHHHhCCCCcEEEEeCCCCCC
Q 002306 727 ASILKGATDRSLIIIDELGRGT 748 (938)
Q Consensus 727 ~~il~~a~~~slvllDEp~~gt 748 (938)
...+....+.++||+|++|+.-
T Consensus 246 ~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 246 KEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHHhCCCCEEEEcCCCCCc
Confidence 3444445778999999999875
No 496
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.99 E-value=0.0013 Score=86.02 Aligned_cols=28 Identities=25% Similarity=0.109 Sum_probs=24.3
Q ss_pred ccCCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 651 LIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+..+.+++++|+||+|+||||++|.++.
T Consensus 202 l~~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 202 LESEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred cccCceEEEEEEcCCCCchHHHHHHHHH
Confidence 4456789999999999999999999854
No 497
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.0019 Score=69.02 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=62.5
Q ss_pred eEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCC
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDR 736 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~ 736 (938)
..++|.||.|+|||+|+..++.-... .|.-| ..+. +..++.++..... .... ....++......
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v----~~it-~~~l~~~l~~~~~--~~~~-------~~~~~l~~l~~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSV----LIIT-VADIMSAMKDTFS--NSET-------SEEQLLNDLSNV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeE----EEEE-HHHHHHHHHHHHh--hccc-------cHHHHHHHhccC
Confidence 36899999999999999998764322 23111 0111 1223322211100 0000 112344445678
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 737 slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
++|++||+|.--.+.....+...++.+-.. .+.+++++|-.
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~-~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSS-SKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCCEEEeCCC
Confidence 999999999876665566676888876544 46788888876
No 498
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.98 E-value=0.0055 Score=64.85 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=64.5
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhh-hhcccccccccccchHHHHHHHhcCCch--hhhh-------cccchHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDRASISVRDCIFARVGAGD--CQLR-------GVSTFMQE 722 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~l-aq~g~~vp~~~~~~~~~d~i~~~~~~~d--~~~~-------~~s~f~~e 722 (938)
+..|++++|.|+.|+|||++.-+++.-... ..-+.|+-.+...-.+.. -+..+|..- .... ....+...
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG-YAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH-HHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 356899999999999999998887643221 223345544432211111 122333210 0000 00111111
Q ss_pred HHHH----HHHHHhCCCCcEEEEeCCCCCC-----ChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 723 MLET----ASILKGATDRSLIIIDELGRGT-----STYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 723 ~~~~----~~il~~a~~~slvllDEp~~gt-----d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
..++ ..++. -.+++++++|= .+.+ |+.........+++.+.+ .|+++++++|..
T Consensus 92 ~~~l~~~~~~~i~-~~~~~~vVIDs-ls~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~ 154 (224)
T TIGR03880 92 LNRIKNELPILIK-ELGASRVVIDP-ISLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEAD 154 (224)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEcC-hHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEccc
Confidence 1121 12222 23578999994 3332 333333334678888876 699999999964
No 499
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00083 Score=65.42 Aligned_cols=117 Identities=23% Similarity=0.305 Sum_probs=60.2
Q ss_pred EEEEEecCCCCchhhhhhhhhhHhh--hhccccccccc----cc--chHHH------HHHHhcCCchhhhhcccchHHHH
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNILM--AQVGSFVPCDR----AS--ISVRD------CIFARVGAGDCQLRGVSTFMQEM 723 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~l--aq~g~~vp~~~----~~--~~~~d------~i~~~~~~~d~~~~~~s~f~~e~ 723 (938)
-++||||.|+||||++.-++...-- -..|.|+-.+- .+ +.++| .+|++.+.+.-....+.-+-..+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHH
Confidence 5789999999999999887642211 11333332211 11 11111 23344433221111122222334
Q ss_pred HHH-HHHHHhC-CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 724 LET-ASILKGA-TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 724 ~~~-~~il~~a-~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
.++ ..+++.| ...+++|+||.|.-=-. ...+ ...++...+ .+.++|++-|-
T Consensus 87 e~i~~~al~rA~~~aDvIIIDEIGpMElk--s~~f-~~~ve~vl~-~~kpliatlHr 139 (179)
T COG1618 87 EEIAIPALRRALEEADVIIIDEIGPMELK--SKKF-REAVEEVLK-SGKPLIATLHR 139 (179)
T ss_pred HHHhHHHHHHHhhcCCEEEEecccchhhc--cHHH-HHHHHHHhc-CCCcEEEEEec
Confidence 433 3344443 34599999999875322 2334 334454444 57778888884
No 500
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.93 E-value=0.0054 Score=80.98 Aligned_cols=52 Identities=8% Similarity=-0.028 Sum_probs=43.0
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 733 a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.+++++|||||++|+|+.....+ ..++..+.. ++.+|++||+..+...++.
T Consensus 1094 ~~~~~~~~lDE~~~~ld~~~~~~~-~~~l~~~~~--~~~~i~~t~~~~~~~~~d~ 1145 (1164)
T TIGR02169 1094 YKPSPFYAFDEVDMFLDGVNVERV-AKLIREKAG--EAQFIVVSLRSPMIEYADR 1145 (1164)
T ss_pred cCCCCcEEecccccccCHHHHHHH-HHHHHHhcC--CCeEEEEECcHHHHHhcce
Confidence 367899999999999999988887 556666654 5789999999887777776
Done!