Query 002306
Match_columns 938
No_of_seqs 581 out of 4055
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 21:00:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_A DNA mismatch repair pro 100.0 3E-152 1E-156 1404.5 80.5 906 8-937 6-926 (934)
2 1wb9_A DNA mismatch repair pro 100.0 5E-143 2E-147 1310.3 74.6 780 16-859 8-799 (800)
3 3thx_B DNA mismatch repair pro 100.0 3E-141 1E-145 1302.2 69.2 798 16-859 11-880 (918)
4 1ewq_A DNA mismatch repair pro 100.0 5E-136 2E-140 1241.1 65.0 743 16-858 11-764 (765)
5 2o8b_B DNA mismatch repair pro 100.0 2E-135 7E-140 1270.7 68.2 810 14-860 64-989 (1022)
6 3tif_A Uncharacterized ABC tra 99.8 4.8E-20 1.6E-24 194.9 12.5 154 644-807 19-225 (235)
7 2pcj_A ABC transporter, lipopr 99.8 1E-19 3.6E-24 191.0 13.0 142 643-787 17-208 (224)
8 4g1u_C Hemin import ATP-bindin 99.8 1.1E-19 3.9E-24 195.4 11.8 144 643-787 24-217 (266)
9 3tui_C Methionine import ATP-b 99.8 2E-19 6.9E-24 199.9 12.8 152 644-806 42-243 (366)
10 3gfo_A Cobalt import ATP-bindi 99.8 1.6E-19 5.3E-24 194.9 10.4 143 644-787 22-213 (275)
11 1vpl_A ABC transporter, ATP-bi 99.8 4.4E-19 1.5E-23 189.6 13.3 142 643-787 28-215 (256)
12 3fvq_A Fe(3+) IONS import ATP- 99.8 5.2E-19 1.8E-23 196.5 13.7 156 643-808 17-220 (359)
13 2olj_A Amino acid ABC transpor 99.8 7.6E-19 2.6E-23 188.4 14.5 143 643-787 37-228 (263)
14 1b0u_A Histidine permease; ABC 99.8 6.6E-19 2.3E-23 189.2 13.0 141 644-787 20-222 (262)
15 2nq2_C Hypothetical ABC transp 99.8 8E-19 2.7E-23 187.4 13.2 144 643-787 18-198 (253)
16 1ji0_A ABC transporter; ATP bi 99.8 9E-19 3.1E-23 185.8 13.2 143 643-787 19-208 (240)
17 3rlf_A Maltose/maltodextrin im 99.8 9.1E-19 3.1E-23 195.9 12.7 143 643-787 16-203 (381)
18 1g6h_A High-affinity branched- 99.8 1.2E-18 4.1E-23 186.8 13.1 142 643-787 20-222 (257)
19 1z47_A CYSA, putative ABC-tran 99.8 9.8E-19 3.4E-23 194.4 12.0 154 643-807 28-226 (355)
20 2yyz_A Sugar ABC transporter, 99.8 1.3E-18 4.4E-23 194.0 12.7 153 644-807 17-214 (359)
21 2qi9_C Vitamin B12 import ATP- 99.8 7E-19 2.4E-23 187.3 10.0 142 644-787 14-202 (249)
22 2onk_A Molybdate/tungstate ABC 99.8 8.7E-19 3E-23 185.6 10.6 140 646-787 15-196 (240)
23 2it1_A 362AA long hypothetical 99.8 2.1E-18 7.3E-23 192.4 12.9 153 644-807 17-214 (362)
24 3d31_A Sulfate/molybdate ABC t 99.8 2.1E-18 7.3E-23 191.6 12.1 141 645-787 15-197 (348)
25 2yz2_A Putative ABC transporte 99.7 2.5E-18 8.5E-23 185.2 11.5 142 644-787 21-207 (266)
26 2ixe_A Antigen peptide transpo 99.7 2.1E-18 7.2E-23 186.1 9.6 143 643-787 32-225 (271)
27 2ff7_A Alpha-hemolysin translo 99.7 2.7E-18 9.1E-23 182.8 10.2 141 643-787 22-212 (247)
28 1v43_A Sugar-binding transport 99.7 2E-18 6.7E-23 193.4 9.6 154 643-807 24-222 (372)
29 2d2e_A SUFC protein; ABC-ATPas 99.7 3E-18 1E-22 182.9 10.5 138 644-783 17-207 (250)
30 1sgw_A Putative ABC transporte 99.7 4E-18 1.4E-22 177.1 10.3 136 644-782 23-196 (214)
31 1oxx_K GLCV, glucose, ABC tran 99.7 5.1E-18 1.7E-22 189.3 11.3 152 645-807 20-221 (353)
32 2ihy_A ABC transporter, ATP-bi 99.7 2.7E-18 9.3E-23 185.8 8.9 142 643-787 34-232 (279)
33 2pjz_A Hypothetical protein ST 99.7 3.3E-18 1.1E-22 183.4 9.2 137 644-787 19-195 (263)
34 1g29_1 MALK, maltose transport 99.7 6.9E-18 2.3E-22 189.4 11.5 154 644-808 17-221 (372)
35 2zu0_C Probable ATP-dependent 99.7 5.4E-18 1.8E-22 182.6 9.0 143 643-787 33-234 (267)
36 1mv5_A LMRA, multidrug resista 99.7 5.8E-18 2E-22 180.0 8.1 142 643-787 15-206 (243)
37 2pze_A Cystic fibrosis transme 99.7 4.3E-18 1.5E-22 179.2 6.9 142 643-787 21-198 (229)
38 2ghi_A Transport protein; mult 99.7 2.2E-17 7.6E-22 177.1 9.4 141 644-787 34-222 (260)
39 2cbz_A Multidrug resistance-as 99.7 1.1E-17 3.7E-22 177.0 6.2 141 643-787 18-197 (237)
40 2bbs_A Cystic fibrosis transme 99.7 2E-17 6.9E-22 179.7 7.3 141 644-787 52-227 (290)
41 3nh6_A ATP-binding cassette SU 99.7 4.6E-17 1.6E-21 177.9 9.8 142 643-787 67-257 (306)
42 3gd7_A Fusion complex of cysti 99.7 2.7E-17 9.3E-22 185.3 5.7 143 642-787 33-222 (390)
43 1yqt_A RNAse L inhibitor; ATP- 99.6 5.5E-16 1.9E-20 183.0 13.5 140 645-787 37-227 (538)
44 3ozx_A RNAse L inhibitor; ATP 99.6 4.8E-16 1.6E-20 183.0 10.1 141 646-787 284-455 (538)
45 3bk7_A ABC transporter ATP-bin 99.6 1.3E-15 4.6E-20 181.6 13.1 141 644-787 106-297 (607)
46 3j16_B RLI1P; ribosome recycli 99.6 6.8E-16 2.3E-20 183.7 10.3 142 645-787 362-537 (608)
47 3bk7_A ABC transporter ATP-bin 99.6 1.2E-15 4.1E-20 182.0 10.8 142 645-787 371-541 (607)
48 1yqt_A RNAse L inhibitor; ATP- 99.6 1.3E-15 4.3E-20 179.9 10.2 142 645-787 301-471 (538)
49 3ux8_A Excinuclease ABC, A sub 99.6 2E-15 6.7E-20 183.9 10.3 83 703-787 186-272 (670)
50 3b5x_A Lipid A export ATP-bind 99.6 5.2E-15 1.8E-19 177.1 13.3 142 643-787 356-547 (582)
51 3j16_B RLI1P; ribosome recycli 99.6 4.5E-15 1.5E-19 176.7 12.7 140 644-787 92-290 (608)
52 3qf4_B Uncharacterized ABC tra 99.6 1.1E-14 3.7E-19 174.7 15.8 142 643-787 368-558 (598)
53 2yl4_A ATP-binding cassette SU 99.6 5E-15 1.7E-19 177.7 12.3 140 644-787 358-550 (595)
54 4a82_A Cystic fibrosis transme 99.6 8.8E-15 3E-19 174.9 13.9 142 643-787 354-544 (578)
55 3ozx_A RNAse L inhibitor; ATP 99.6 1.2E-14 4.1E-19 171.1 14.0 131 654-787 23-206 (538)
56 4gp7_A Metallophosphoesterase; 99.6 1.2E-15 4E-20 153.2 4.6 135 648-785 1-165 (171)
57 3b60_A Lipid A export ATP-bind 99.6 2.5E-14 8.6E-19 171.2 16.9 142 643-787 356-547 (582)
58 3qf4_A ABC transporter, ATP-bi 99.6 2.8E-14 9.6E-19 170.6 17.0 141 643-787 356-546 (587)
59 2iw3_A Elongation factor 3A; a 99.5 1.6E-14 5.4E-19 178.1 14.1 149 643-805 448-623 (986)
60 3ux8_A Excinuclease ABC, A sub 99.5 1E-14 3.6E-19 177.4 11.6 82 704-787 528-614 (670)
61 3pih_A Uvrabc system protein A 99.4 2E-13 6.8E-18 168.3 12.9 84 702-787 788-876 (916)
62 2vf7_A UVRA2, excinuclease ABC 99.4 1.8E-13 6.2E-18 167.3 11.9 85 701-787 712-801 (842)
63 2iw3_A Elongation factor 3A; a 99.4 3.5E-14 1.2E-18 175.0 5.3 83 700-787 881-967 (986)
64 2ygr_A Uvrabc system protein A 99.4 3.5E-13 1.2E-17 165.4 14.0 85 701-787 845-934 (993)
65 2r6f_A Excinuclease ABC subuni 99.4 2.2E-13 7.4E-18 166.6 11.9 85 701-787 827-916 (972)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 5.3E-13 1.8E-17 150.2 9.1 71 715-787 276-353 (365)
67 3g5u_A MCG1178, multidrug resi 99.4 5.8E-13 2E-17 172.3 9.2 141 644-787 1047-1238(1284)
68 4aby_A DNA repair protein RECN 99.3 7.5E-13 2.6E-17 151.9 7.7 113 719-853 296-413 (415)
69 3g5u_A MCG1178, multidrug resi 99.3 1.6E-12 5.5E-17 168.2 8.5 141 643-787 403-593 (1284)
70 1ye8_A Protein THEP1, hypothet 99.3 1.3E-12 4.6E-17 131.7 5.0 125 658-787 2-152 (178)
71 4f4c_A Multidrug resistance pr 99.3 2.2E-11 7.4E-16 158.1 16.6 154 642-808 430-633 (1321)
72 3b85_A Phosphate starvation-in 99.3 7.2E-13 2.5E-17 137.0 1.8 119 654-783 20-162 (208)
73 2ehv_A Hypothetical protein PH 99.2 1E-11 3.4E-16 131.8 7.8 128 652-782 26-185 (251)
74 1e69_A Chromosome segregation 99.2 1.4E-11 4.8E-16 136.4 9.0 69 716-787 217-290 (322)
75 2npi_A Protein CLP1; CLP1-PCF1 99.2 2.5E-12 8.6E-17 148.4 1.4 126 647-780 129-299 (460)
76 1znw_A Guanylate kinase, GMP k 99.2 8.4E-13 2.9E-17 136.6 -2.5 53 734-787 140-197 (207)
77 4f4c_A Multidrug resistance pr 99.2 1.4E-11 4.7E-16 159.9 6.5 141 643-787 1092-1284(1321)
78 3qkt_A DNA double-strand break 99.1 1.1E-10 3.7E-15 130.2 10.6 70 716-787 246-322 (339)
79 1cr0_A DNA primase/helicase; R 99.1 1.3E-10 4.3E-15 127.1 9.7 134 645-779 24-197 (296)
80 2w0m_A SSO2452; RECA, SSPF, un 99.1 4.6E-10 1.6E-14 117.4 11.1 131 647-779 13-168 (235)
81 4a74_A DNA repair and recombin 99.0 1.7E-10 5.8E-15 120.7 6.4 127 653-780 22-181 (231)
82 3ec2_A DNA replication protein 99.0 1.8E-10 6E-15 116.1 5.8 104 654-779 36-143 (180)
83 1nlf_A Regulatory protein REPA 99.0 3.7E-10 1.3E-14 122.3 8.5 127 653-782 27-184 (279)
84 1tq4_A IIGP1, interferon-induc 99.0 4E-11 1.4E-15 135.9 -0.7 143 644-787 37-246 (413)
85 1tf7_A KAIC; homohexamer, hexa 98.9 2.2E-09 7.6E-14 126.7 8.9 122 652-779 277-417 (525)
86 2pt7_A CAG-ALFA; ATPase, prote 98.9 3.2E-10 1.1E-14 125.5 1.5 122 645-787 160-283 (330)
87 2cvh_A DNA repair and recombin 98.9 5.5E-09 1.9E-13 108.2 10.8 127 652-780 16-157 (220)
88 2eyu_A Twitching motility prot 98.9 2.9E-09 1E-13 113.8 8.1 117 645-787 16-141 (261)
89 1tf7_A KAIC; homohexamer, hexa 98.8 4.1E-09 1.4E-13 124.4 9.5 135 643-781 25-187 (525)
90 3b9q_A Chloroplast SRP recepto 98.8 1E-08 3.5E-13 111.9 9.7 125 648-780 92-258 (302)
91 2kjq_A DNAA-related protein; s 98.8 1E-08 3.5E-13 100.0 8.1 86 655-778 35-124 (149)
92 2og2_A Putative signal recogni 98.8 1.8E-08 6.2E-13 112.1 10.8 121 648-780 149-315 (359)
93 1pzn_A RAD51, DNA repair and r 98.7 1.5E-08 5.3E-13 113.0 8.9 129 651-780 126-287 (349)
94 2jeo_A Uridine-cytidine kinase 98.7 2.6E-09 8.8E-14 113.3 2.3 38 642-679 11-48 (245)
95 1n0w_A DNA repair protein RAD5 98.7 1.8E-08 6.3E-13 106.0 8.8 126 653-780 21-175 (243)
96 3jvv_A Twitching mobility prot 98.7 1.1E-08 3.7E-13 114.2 6.8 117 653-787 120-239 (356)
97 2obl_A ESCN; ATPase, hydrolase 98.7 5E-09 1.7E-13 116.6 2.1 142 644-807 60-246 (347)
98 1z6g_A Guanylate kinase; struc 98.6 1.4E-09 4.9E-14 113.2 -3.4 133 645-782 12-197 (218)
99 3aez_A Pantothenate kinase; tr 98.6 3.1E-09 1.1E-13 116.6 -1.8 118 653-782 87-231 (312)
100 1f2t_B RAD50 ABC-ATPase; DNA d 98.5 7.1E-08 2.4E-12 93.7 5.8 73 713-787 52-131 (148)
101 2i3b_A HCR-ntpase, human cance 98.5 1.3E-08 4.4E-13 103.4 0.5 26 656-681 1-26 (189)
102 3sop_A Neuronal-specific septi 98.5 7E-09 2.4E-13 111.5 -2.1 36 737-779 115-150 (270)
103 2v9p_A Replication protein E1; 98.5 1.7E-09 6E-14 117.6 -7.5 103 644-756 114-232 (305)
104 2dpy_A FLII, flagellum-specifi 98.5 7.4E-08 2.5E-12 110.4 4.6 144 643-807 145-335 (438)
105 3asz_A Uridine kinase; cytidin 98.4 6.4E-10 2.2E-14 114.9 -11.8 26 654-679 4-29 (211)
106 3lda_A DNA repair protein RAD5 98.4 3.1E-07 1.1E-11 103.9 8.5 125 653-779 175-328 (400)
107 1s96_A Guanylate kinase, GMP k 98.4 1.4E-07 4.8E-12 98.0 4.2 112 654-782 14-143 (219)
108 2ewv_A Twitching motility prot 98.4 5.4E-07 1.9E-11 101.3 9.0 117 653-787 133-252 (372)
109 1lw7_A Transcriptional regulat 98.3 4.3E-07 1.5E-11 102.0 6.3 140 647-787 159-337 (365)
110 2dr3_A UPF0273 protein PH0284; 98.3 2.3E-06 7.9E-11 89.9 10.8 126 652-780 19-174 (247)
111 3szr_A Interferon-induced GTP- 98.3 1.8E-07 6E-12 112.1 2.3 47 734-781 145-198 (608)
112 3pih_A Uvrabc system protein A 98.2 1.6E-06 5.4E-11 107.2 8.9 85 701-787 446-534 (916)
113 1sxj_E Activator 1 40 kDa subu 98.2 1.5E-06 5.1E-11 96.9 7.8 44 733-780 132-175 (354)
114 2r6f_A Excinuclease ABC subuni 98.2 2.3E-06 8E-11 105.1 8.7 84 702-787 487-574 (972)
115 2px0_A Flagellar biosynthesis 98.2 6.2E-06 2.1E-10 89.6 10.9 123 654-787 103-235 (296)
116 1rj9_A FTSY, signal recognitio 98.1 3.2E-06 1.1E-10 92.2 8.5 27 654-680 100-126 (304)
117 2qnr_A Septin-2, protein NEDD5 98.1 1.1E-06 3.6E-11 96.0 4.0 37 738-779 130-167 (301)
118 2zr9_A Protein RECA, recombina 98.1 8.5E-06 2.9E-10 90.7 11.0 124 653-780 58-199 (349)
119 2ygr_A Uvrabc system protein A 98.1 4.1E-06 1.4E-10 103.3 9.0 83 703-787 505-591 (993)
120 2vf7_A UVRA2, excinuclease ABC 98.1 4.7E-06 1.6E-10 102.1 9.3 84 702-787 362-449 (842)
121 2qag_C Septin-7; cell cycle, c 98.0 7.9E-07 2.7E-11 101.0 0.5 33 643-681 24-56 (418)
122 1htw_A HI0065; nucleotide-bind 98.0 1.3E-06 4.3E-11 85.9 1.3 38 643-680 20-57 (158)
123 3kta_B Chromosome segregation 98.0 1.1E-05 3.6E-10 80.4 7.4 68 717-787 63-135 (173)
124 2qag_B Septin-6, protein NEDD5 98.0 7E-06 2.4E-10 93.0 6.7 131 646-779 30-219 (427)
125 3e70_C DPA, signal recognition 97.9 6.9E-06 2.4E-10 90.4 6.2 28 653-680 126-153 (328)
126 2yhs_A FTSY, cell division pro 97.9 3.6E-05 1.2E-09 88.3 11.7 34 647-680 284-317 (503)
127 4ad8_A DNA repair protein RECN 97.9 2.4E-05 8E-10 92.0 10.2 65 720-787 399-466 (517)
128 3hr8_A Protein RECA; alpha and 97.9 7.2E-05 2.5E-09 83.0 12.7 123 653-778 58-197 (356)
129 2gza_A Type IV secretion syste 97.8 4.4E-06 1.5E-10 93.5 1.4 34 646-679 165-198 (361)
130 2r6a_A DNAB helicase, replicat 97.8 4.8E-05 1.6E-09 87.9 10.1 128 649-777 196-362 (454)
131 2bbw_A Adenylate kinase 4, AK4 97.8 1.5E-05 5.1E-10 84.2 5.3 33 733-766 162-198 (246)
132 1ls1_A Signal recognition part 97.8 6.9E-05 2.4E-09 81.3 10.2 109 648-764 92-209 (295)
133 1fnn_A CDC6P, cell division co 97.7 0.00011 3.8E-09 82.5 10.5 122 658-783 46-173 (389)
134 3lnc_A Guanylate kinase, GMP k 97.6 1.7E-05 5.9E-10 82.7 1.8 35 645-679 16-51 (231)
135 1vma_A Cell division protein F 97.6 0.00019 6.4E-09 78.2 10.0 32 649-680 97-128 (306)
136 3tr0_A Guanylate kinase, GMP k 97.5 3E-05 1E-09 79.0 2.8 27 653-679 4-30 (205)
137 1pui_A ENGB, probable GTP-bind 97.5 5.7E-05 2E-09 77.0 4.8 29 651-679 21-49 (210)
138 1v5w_A DMC1, meiotic recombina 97.5 0.00022 7.5E-09 79.1 9.5 127 653-780 119-275 (343)
139 2qby_A CDC6 homolog 1, cell di 97.5 4.2E-05 1.4E-09 85.6 3.1 125 654-781 43-175 (386)
140 2z4s_A Chromosomal replication 97.5 0.00014 4.7E-09 83.6 7.3 103 656-778 130-236 (440)
141 1w1w_A Structural maintenance 97.4 0.00014 4.8E-09 83.4 6.4 69 717-787 332-405 (430)
142 2xau_A PRE-mRNA-splicing facto 97.4 0.00015 5.2E-09 89.0 7.0 130 655-786 108-260 (773)
143 1udx_A The GTP-binding protein 97.4 5.9E-05 2E-09 85.6 3.0 125 647-778 148-308 (416)
144 2ce7_A Cell division protein F 97.3 0.00024 8.1E-09 82.0 7.3 99 659-781 52-166 (476)
145 1odf_A YGR205W, hypothetical 3 97.3 6.4E-05 2.2E-09 81.3 2.0 26 654-679 29-54 (290)
146 3kta_A Chromosome segregation 97.3 9.3E-05 3.2E-09 73.9 3.0 32 647-679 18-49 (182)
147 3auy_A DNA double-strand break 97.3 0.0002 6.9E-09 80.3 6.0 52 733-787 302-354 (371)
148 3euj_A Chromosome partition pr 97.2 8.2E-05 2.8E-09 85.6 2.1 35 646-681 20-54 (483)
149 1zp6_A Hypothetical protein AT 97.2 0.00013 4.3E-09 73.4 2.9 27 653-679 6-32 (191)
150 3c8u_A Fructokinase; YP_612366 97.2 0.00014 4.6E-09 74.6 3.1 28 654-681 20-47 (208)
151 3a00_A Guanylate kinase, GMP k 97.2 0.00011 3.9E-09 73.8 2.1 25 656-680 1-25 (186)
152 3bos_A Putative DNA replicatio 97.1 0.00038 1.3E-08 72.2 5.6 95 655-778 51-147 (242)
153 1u94_A RECA protein, recombina 97.1 0.0015 5.1E-08 72.6 10.7 122 653-779 60-200 (356)
154 1l8q_A Chromosomal replication 97.1 0.00047 1.6E-08 75.6 6.6 102 656-778 37-140 (324)
155 1lvg_A Guanylate kinase, GMP k 97.1 0.00015 5E-09 73.8 2.1 26 655-680 3-28 (198)
156 2z43_A DNA repair and recombin 97.1 0.00063 2.2E-08 74.8 7.3 126 653-779 104-258 (324)
157 2w58_A DNAI, primosome compone 97.1 0.0004 1.4E-08 70.4 5.1 24 657-680 55-78 (202)
158 3kl4_A SRP54, signal recogniti 97.0 0.00089 3E-08 76.1 7.9 117 655-778 96-223 (433)
159 2b8t_A Thymidine kinase; deoxy 97.0 0.00037 1.3E-08 72.1 4.3 110 654-777 10-124 (223)
160 2ius_A DNA translocase FTSK; n 97.0 0.00027 9.2E-09 81.9 3.6 28 651-678 162-189 (512)
161 2j41_A Guanylate kinase; GMP, 97.0 0.00027 9.3E-09 71.8 2.7 28 652-679 2-29 (207)
162 1zu4_A FTSY; GTPase, signal re 96.9 0.0016 5.3E-08 71.4 8.7 34 647-680 96-129 (320)
163 1sq5_A Pantothenate kinase; P- 96.9 0.00015 5.3E-09 79.1 0.7 27 654-680 78-104 (308)
164 4a1f_A DNAB helicase, replicat 96.9 0.00089 3E-08 73.7 6.6 118 652-777 42-164 (338)
165 2qm8_A GTPase/ATPase; G protei 96.9 0.00022 7.7E-09 78.8 1.9 36 645-680 44-79 (337)
166 3vaa_A Shikimate kinase, SK; s 96.9 0.00029 9.8E-09 71.6 2.4 36 643-678 12-47 (199)
167 4eun_A Thermoresistant glucoki 96.9 0.00032 1.1E-08 71.3 2.7 29 651-679 24-52 (200)
168 1kgd_A CASK, peripheral plasma 96.9 0.00036 1.2E-08 69.7 2.6 25 655-679 4-28 (180)
169 2bdt_A BH3686; alpha-beta prot 96.8 0.00034 1.2E-08 70.2 2.1 23 656-678 2-24 (189)
170 2v1u_A Cell division control p 96.8 0.0012 4.1E-08 73.7 6.7 124 654-780 42-178 (387)
171 2q6t_A DNAB replication FORK h 96.8 0.0037 1.3E-07 71.8 10.4 31 652-682 196-226 (444)
172 1jbk_A CLPB protein; beta barr 96.7 0.0037 1.3E-07 61.8 8.7 25 655-679 42-66 (195)
173 1njg_A DNA polymerase III subu 96.7 0.0033 1.1E-07 64.7 8.6 23 657-679 46-68 (250)
174 3llm_A ATP-dependent RNA helic 96.7 0.0036 1.2E-07 65.2 8.8 25 655-679 75-99 (235)
175 1xp8_A RECA protein, recombina 96.7 0.0081 2.8E-07 66.9 12.1 121 654-779 72-211 (366)
176 2o5v_A DNA replication and rep 96.7 0.00057 1.9E-08 76.0 2.5 55 719-778 266-330 (359)
177 3b9p_A CG5977-PA, isoform A; A 96.7 0.0037 1.3E-07 67.4 8.8 24 655-678 53-76 (297)
178 2i1q_A DNA repair and recombin 96.6 0.0027 9.2E-08 69.6 7.7 30 653-682 95-124 (322)
179 2o5v_A DNA replication and rep 96.6 0.0012 4.1E-08 73.3 4.6 9 725-733 312-320 (359)
180 3io5_A Recombination and repai 96.6 0.0099 3.4E-07 64.2 11.5 124 653-780 26-173 (333)
181 3tau_A Guanylate kinase, GMP k 96.6 0.00075 2.6E-08 69.1 2.6 26 654-679 6-31 (208)
182 2p65_A Hypothetical protein PF 96.6 0.0044 1.5E-07 61.1 8.0 24 656-679 43-66 (187)
183 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0094 3.2E-07 64.6 11.0 26 654-679 121-146 (331)
184 3uie_A Adenylyl-sulfate kinase 96.6 0.00074 2.5E-08 68.5 2.3 33 648-680 17-49 (200)
185 2vp4_A Deoxynucleoside kinase; 96.6 0.001 3.4E-08 69.2 3.4 28 652-679 16-43 (230)
186 3cf0_A Transitional endoplasmi 96.5 0.0048 1.6E-07 66.9 8.7 27 653-679 46-72 (301)
187 1kag_A SKI, shikimate kinase I 96.5 0.00084 2.9E-08 66.1 1.9 24 656-679 4-27 (173)
188 1knq_A Gluconate kinase; ALFA/ 96.4 0.0011 3.6E-08 65.6 2.5 26 654-679 6-31 (175)
189 3bh0_A DNAB-like replicative h 96.4 0.0033 1.1E-07 68.7 6.7 121 652-778 64-190 (315)
190 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0013 4.4E-08 63.6 2.8 23 656-678 23-45 (149)
191 2x8a_A Nuclear valosin-contain 96.4 0.00081 2.8E-08 72.0 1.4 33 645-679 35-67 (274)
192 3k1j_A LON protease, ATP-depen 96.4 0.00036 1.2E-08 83.6 -1.6 37 644-680 48-84 (604)
193 1p9r_A General secretion pathw 96.4 0.0013 4.4E-08 74.7 3.0 27 654-680 165-191 (418)
194 2orv_A Thymidine kinase; TP4A 96.4 0.0027 9.2E-08 65.5 4.9 108 654-779 17-126 (234)
195 2oap_1 GSPE-2, type II secreti 96.3 0.00052 1.8E-08 80.0 -0.5 35 646-680 250-284 (511)
196 1svm_A Large T antigen; AAA+ f 96.3 0.00084 2.9E-08 75.1 1.1 34 645-678 158-191 (377)
197 3h4m_A Proteasome-activating n 96.3 0.0021 7.1E-08 68.9 4.1 25 654-678 49-73 (285)
198 1ypw_A Transitional endoplasmi 96.3 0.0033 1.1E-07 77.6 6.3 28 652-679 234-261 (806)
199 3nwj_A ATSK2; P loop, shikimat 96.3 0.00051 1.8E-08 72.5 -0.9 36 643-678 32-70 (250)
200 2qgz_A Helicase loader, putati 96.2 0.0021 7.1E-08 70.0 3.5 102 656-778 152-257 (308)
201 4e22_A Cytidylate kinase; P-lo 96.2 0.0016 5.6E-08 68.7 2.6 24 654-677 25-48 (252)
202 2dhr_A FTSH; AAA+ protein, hex 96.2 0.011 3.6E-07 68.7 9.3 32 646-679 56-87 (499)
203 3ney_A 55 kDa erythrocyte memb 96.2 0.0019 6.5E-08 65.4 2.7 25 654-678 17-41 (197)
204 1rz3_A Hypothetical protein rb 96.1 0.0023 7.8E-08 65.0 3.1 27 653-679 19-45 (201)
205 3t15_A Ribulose bisphosphate c 96.1 0.0057 2E-07 66.0 6.3 24 656-679 36-59 (293)
206 1lv7_A FTSH; alpha/beta domain 96.1 0.017 5.7E-07 60.8 9.8 22 658-679 47-68 (257)
207 3dm5_A SRP54, signal recogniti 96.1 0.0073 2.5E-07 68.6 7.2 24 655-678 99-122 (443)
208 1nij_A Hypothetical protein YJ 96.1 0.0022 7.5E-08 70.2 2.7 23 657-679 5-27 (318)
209 1xx6_A Thymidine kinase; NESG, 96.1 0.0041 1.4E-07 62.7 4.5 109 654-778 6-117 (191)
210 2e87_A Hypothetical protein PH 96.0 0.0022 7.5E-08 71.4 2.7 44 733-779 246-292 (357)
211 1w1w_A Structural maintenance 96.0 0.0022 7.5E-08 73.3 2.7 28 653-680 23-50 (430)
212 4eaq_A DTMP kinase, thymidylat 96.0 0.015 5.3E-07 60.2 8.8 26 654-679 24-49 (229)
213 1ixz_A ATP-dependent metallopr 96.0 0.0018 6.3E-08 68.1 1.4 33 645-679 40-72 (254)
214 3qks_A DNA double-strand break 95.9 0.0035 1.2E-07 63.8 3.1 23 656-678 23-45 (203)
215 2dy1_A Elongation factor G; tr 95.8 0.0088 3E-07 72.1 6.9 118 652-781 5-138 (665)
216 2ffh_A Protein (FFH); SRP54, s 95.8 0.012 4E-07 66.7 7.5 31 648-680 92-122 (425)
217 1iy2_A ATP-dependent metallopr 95.8 0.0023 8E-08 68.4 1.5 33 645-679 64-96 (278)
218 1u0l_A Probable GTPase ENGC; p 95.8 0.0029 9.8E-08 68.7 2.2 25 654-678 167-191 (301)
219 1qhl_A Protein (cell division 95.8 0.00052 1.8E-08 71.2 -3.5 30 648-680 22-51 (227)
220 2qt1_A Nicotinamide riboside k 95.8 0.004 1.4E-07 63.3 3.1 26 653-678 18-43 (207)
221 2yv5_A YJEQ protein; hydrolase 95.8 0.0032 1.1E-07 68.4 2.4 24 654-677 163-186 (302)
222 4fcw_A Chaperone protein CLPB; 95.8 0.018 6.2E-07 62.2 8.5 24 657-680 48-71 (311)
223 1sxj_D Activator 1 41 kDa subu 95.8 0.011 3.9E-07 64.9 6.9 23 658-680 60-82 (353)
224 1jjv_A Dephospho-COA kinase; P 95.7 0.0032 1.1E-07 63.9 2.1 22 657-678 3-24 (206)
225 3tqc_A Pantothenate kinase; bi 95.7 0.0041 1.4E-07 67.9 2.9 23 657-679 93-115 (321)
226 1sxj_C Activator 1 40 kDa subu 95.7 0.0034 1.2E-07 69.3 2.2 27 654-680 42-70 (340)
227 3m6a_A ATP-dependent protease 95.7 0.0044 1.5E-07 72.9 3.3 32 648-680 101-132 (543)
228 2rcn_A Probable GTPase ENGC; Y 95.7 0.0035 1.2E-07 69.4 2.2 24 655-678 214-237 (358)
229 2if2_A Dephospho-COA kinase; a 95.6 0.0039 1.3E-07 63.1 2.3 21 658-678 3-23 (204)
230 3co5_A Putative two-component 95.6 0.03 1E-06 53.3 8.3 22 657-678 28-49 (143)
231 2r8r_A Sensor protein; KDPD, P 95.6 0.0036 1.2E-07 64.5 1.8 44 735-779 84-127 (228)
232 1t9h_A YLOQ, probable GTPase E 95.6 0.0018 6E-08 70.4 -0.5 26 653-678 170-195 (307)
233 3bgw_A DNAB-like replicative h 95.6 0.051 1.7E-06 62.1 11.7 31 652-682 193-223 (444)
234 1q57_A DNA primase/helicase; d 95.6 0.04 1.4E-06 64.2 10.9 30 653-682 239-268 (503)
235 4b4t_L 26S protease subunit RP 95.5 0.047 1.6E-06 62.0 10.8 25 654-678 213-237 (437)
236 2pez_A Bifunctional 3'-phospho 95.5 0.0051 1.8E-07 60.9 2.6 26 654-679 3-28 (179)
237 1cke_A CK, MSSA, protein (cyti 95.5 0.0047 1.6E-07 63.5 2.3 23 656-678 5-27 (227)
238 2j9r_A Thymidine kinase; TK1, 95.4 0.017 5.9E-07 58.9 6.1 108 654-777 26-136 (214)
239 3d8b_A Fidgetin-like protein 1 95.4 0.016 5.4E-07 64.4 6.4 23 656-678 117-139 (357)
240 3cmw_A Protein RECA, recombina 95.4 0.046 1.6E-06 71.5 11.4 121 653-778 729-868 (1706)
241 4b4t_K 26S protease regulatory 95.4 0.029 1E-06 63.5 8.5 25 654-678 204-228 (428)
242 1y63_A LMAJ004144AAA protein; 95.4 0.0065 2.2E-07 60.6 2.8 30 649-678 3-32 (184)
243 1in4_A RUVB, holliday junction 95.3 0.0017 5.7E-08 71.7 -1.8 23 657-679 52-74 (334)
244 1j8m_F SRP54, signal recogniti 95.3 0.034 1.2E-06 60.0 8.6 31 649-680 92-122 (297)
245 4ad8_A DNA repair protein RECN 95.3 0.0031 1.1E-07 73.9 0.2 32 647-679 52-83 (517)
246 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.054 1.8E-06 56.7 9.6 23 656-678 39-61 (262)
247 2qor_A Guanylate kinase; phosp 95.2 0.0066 2.3E-07 61.6 2.2 25 654-678 10-34 (204)
248 2chg_A Replication factor C sm 95.2 0.059 2E-06 54.3 9.4 22 658-679 40-61 (226)
249 1oix_A RAS-related protein RAB 95.1 0.0075 2.6E-07 60.4 2.4 23 657-679 30-52 (191)
250 2f1r_A Molybdopterin-guanine d 95.1 0.0045 1.5E-07 61.2 0.7 24 657-680 3-26 (171)
251 4b4t_J 26S protease regulatory 95.1 0.043 1.5E-06 61.4 8.4 25 654-678 180-204 (405)
252 3lxx_A GTPase IMAP family memb 95.0 0.012 4E-07 61.3 3.7 45 733-778 110-155 (239)
253 3cr8_A Sulfate adenylyltranfer 95.0 0.0063 2.2E-07 71.4 1.5 27 654-680 367-393 (552)
254 3t61_A Gluconokinase; PSI-biol 94.9 0.0083 2.8E-07 60.6 1.9 23 656-678 18-40 (202)
255 3syl_A Protein CBBX; photosynt 94.9 0.11 3.9E-06 55.7 11.1 25 656-680 67-91 (309)
256 2f9l_A RAB11B, member RAS onco 94.8 0.0089 3E-07 60.1 2.0 22 658-679 7-28 (199)
257 3auy_A DNA double-strand break 94.8 0.012 4E-07 65.8 3.2 23 657-679 26-48 (371)
258 2zts_A Putative uncharacterize 94.8 0.077 2.6E-06 54.9 9.3 28 653-680 27-54 (251)
259 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.057 1.9E-06 59.0 8.6 24 656-679 45-68 (322)
260 4b4t_M 26S protease regulatory 94.8 0.064 2.2E-06 60.8 9.0 25 654-678 213-237 (434)
261 2yvu_A Probable adenylyl-sulfa 94.7 0.014 4.6E-07 58.2 2.9 27 653-679 10-36 (186)
262 3pfi_A Holliday junction ATP-d 94.7 0.08 2.7E-06 57.9 9.5 22 657-678 56-77 (338)
263 3hu3_A Transitional endoplasmi 94.7 0.041 1.4E-06 63.7 7.4 22 657-678 239-260 (489)
264 3cm0_A Adenylate kinase; ATP-b 94.7 0.011 3.9E-07 58.5 2.2 24 655-678 3-26 (186)
265 3cmw_A Protein RECA, recombina 94.6 0.11 3.8E-06 68.0 11.7 122 653-779 380-520 (1706)
266 3cmu_A Protein RECA, recombina 94.6 0.099 3.4E-06 69.3 11.1 123 653-779 380-520 (2050)
267 2p67_A LAO/AO transport system 94.6 0.011 3.7E-07 65.3 2.0 33 647-679 47-79 (341)
268 3eie_A Vacuolar protein sortin 94.5 0.038 1.3E-06 60.3 6.2 24 656-679 51-74 (322)
269 1d2n_A N-ethylmaleimide-sensit 94.5 0.037 1.3E-06 58.7 5.9 25 655-679 63-87 (272)
270 1w5s_A Origin recognition comp 94.5 0.038 1.3E-06 62.0 6.3 126 655-782 49-192 (412)
271 3n70_A Transport activator; si 94.4 0.039 1.3E-06 52.5 5.3 23 656-678 24-46 (145)
272 1tue_A Replication protein E1; 94.3 0.059 2E-06 54.5 6.4 26 654-679 56-81 (212)
273 1ypw_A Transitional endoplasmi 94.3 0.018 6.2E-07 71.0 3.3 31 650-680 505-535 (806)
274 3kb2_A SPBC2 prophage-derived 94.2 0.016 5.4E-07 56.5 2.1 21 658-678 3-23 (173)
275 3pvs_A Replication-associated 94.2 0.062 2.1E-06 61.5 7.2 23 657-679 51-73 (447)
276 1m7g_A Adenylylsulfate kinase; 94.2 0.019 6.6E-07 58.4 2.7 27 653-679 22-48 (211)
277 1jr3_A DNA polymerase III subu 94.1 0.067 2.3E-06 59.2 7.2 23 657-679 39-61 (373)
278 1ni3_A YCHF GTPase, YCHF GTP-b 94.1 0.021 7.2E-07 64.0 2.9 25 654-678 18-42 (392)
279 4b4t_I 26S protease regulatory 94.0 0.1 3.5E-06 58.7 8.2 25 654-678 214-238 (437)
280 1qhx_A CPT, protein (chloramph 94.0 0.02 6.9E-07 56.3 2.3 23 656-678 3-25 (178)
281 1q3t_A Cytidylate kinase; nucl 94.0 0.022 7.4E-07 59.2 2.6 25 654-678 14-38 (236)
282 1qvr_A CLPB protein; coiled co 93.9 0.074 2.5E-06 66.1 7.6 115 657-783 192-313 (854)
283 2qp9_X Vacuolar protein sortin 93.8 0.092 3.2E-06 58.1 7.6 23 657-679 85-107 (355)
284 4b4t_H 26S protease regulatory 93.8 0.16 5.4E-06 57.7 9.5 25 654-678 241-265 (467)
285 1sxj_A Activator 1 95 kDa subu 93.8 0.059 2E-06 62.9 6.2 24 656-679 77-100 (516)
286 2rhm_A Putative kinase; P-loop 93.8 0.028 9.6E-07 55.9 3.0 24 655-678 4-27 (193)
287 1a5t_A Delta prime, HOLB; zinc 93.7 0.18 6E-06 55.3 9.5 116 657-780 25-149 (334)
288 2www_A Methylmalonic aciduria 93.7 0.026 9E-07 62.4 2.8 25 655-679 73-97 (349)
289 3u61_B DNA polymerase accessor 93.7 0.066 2.2E-06 58.2 6.0 23 656-678 48-70 (324)
290 2ze6_A Isopentenyl transferase 93.7 0.024 8.2E-07 59.7 2.3 22 657-678 2-23 (253)
291 2p5t_B PEZT; postsegregational 93.6 0.023 8E-07 59.7 2.1 25 654-678 30-54 (253)
292 1vht_A Dephospho-COA kinase; s 93.6 0.028 9.6E-07 57.4 2.7 23 656-678 4-26 (218)
293 3uk6_A RUVB-like 2; hexameric 93.6 0.19 6.5E-06 55.4 9.7 25 655-679 69-93 (368)
294 2qby_B CDC6 homolog 3, cell di 93.6 0.048 1.6E-06 60.6 4.8 25 655-679 44-68 (384)
295 3vfd_A Spastin; ATPase, microt 93.5 0.077 2.6E-06 59.5 6.4 23 656-678 148-170 (389)
296 1kht_A Adenylate kinase; phosp 93.5 0.027 9.2E-07 55.9 2.3 23 656-678 3-25 (192)
297 3cmu_A Protein RECA, recombina 93.5 0.19 6.6E-06 66.6 10.7 124 653-779 729-869 (2050)
298 1hqc_A RUVB; extended AAA-ATPa 93.5 0.19 6.5E-06 54.3 9.3 23 656-678 38-60 (324)
299 3e2i_A Thymidine kinase; Zn-bi 93.4 0.083 2.8E-06 53.8 5.7 108 654-778 26-137 (219)
300 1gvn_B Zeta; postsegregational 93.4 0.032 1.1E-06 59.9 2.8 25 654-678 31-55 (287)
301 1np6_A Molybdopterin-guanine d 93.3 0.029 1E-06 55.5 2.2 22 657-678 7-28 (174)
302 1via_A Shikimate kinase; struc 93.3 0.026 9E-07 55.4 1.8 21 658-678 6-26 (175)
303 2zan_A Vacuolar protein sortin 93.2 0.095 3.3E-06 59.9 6.6 24 656-679 167-190 (444)
304 1ex7_A Guanylate kinase; subst 93.2 0.029 9.8E-07 56.2 1.9 20 657-676 2-21 (186)
305 1ly1_A Polynucleotide kinase; 93.2 0.033 1.1E-06 54.7 2.3 22 657-678 3-24 (181)
306 3lw7_A Adenylate kinase relate 93.1 0.033 1.1E-06 54.1 2.1 20 657-676 2-21 (179)
307 3r20_A Cytidylate kinase; stru 93.0 0.034 1.2E-06 57.7 2.2 23 656-678 9-31 (233)
308 1iqp_A RFCS; clamp loader, ext 92.9 0.12 4.2E-06 55.8 6.6 22 658-679 48-69 (327)
309 3iij_A Coilin-interacting nucl 92.9 0.041 1.4E-06 54.3 2.5 24 655-678 10-33 (180)
310 2gj8_A MNME, tRNA modification 92.8 0.043 1.5E-06 53.7 2.5 24 655-678 3-26 (172)
311 2wji_A Ferrous iron transport 92.7 0.041 1.4E-06 53.3 2.2 22 657-678 4-25 (165)
312 2vli_A Antibiotic resistance p 92.6 0.04 1.4E-06 54.3 2.0 23 656-678 5-27 (183)
313 1uf9_A TT1252 protein; P-loop, 92.6 0.051 1.7E-06 54.5 2.8 24 655-678 7-30 (203)
314 2jaq_A Deoxyguanosine kinase; 92.6 0.043 1.5E-06 55.0 2.1 21 658-678 2-22 (205)
315 2ga8_A Hypothetical 39.9 kDa p 92.5 0.027 9.1E-07 62.0 0.6 32 648-679 14-47 (359)
316 2c95_A Adenylate kinase 1; tra 92.5 0.053 1.8E-06 54.0 2.7 24 655-678 8-31 (196)
317 3cf2_A TER ATPase, transitiona 92.5 0.28 9.6E-06 59.8 9.5 25 654-678 236-260 (806)
318 1tev_A UMP-CMP kinase; ploop, 92.4 0.049 1.7E-06 54.0 2.4 23 656-678 3-25 (196)
319 1ega_A Protein (GTP-binding pr 92.4 0.044 1.5E-06 59.3 2.0 24 655-678 7-30 (301)
320 2plr_A DTMP kinase, probable t 92.3 0.054 1.9E-06 54.6 2.6 23 656-678 4-26 (213)
321 3ice_A Transcription terminati 92.3 0.063 2.1E-06 59.5 3.1 33 648-680 166-198 (422)
322 2v54_A DTMP kinase, thymidylat 92.3 0.054 1.8E-06 54.4 2.5 24 655-678 3-26 (204)
323 2a5y_B CED-4; apoptosis; HET: 92.2 0.17 5.7E-06 59.5 6.9 115 655-783 151-279 (549)
324 1qf9_A UMP/CMP kinase, protein 92.2 0.07 2.4E-06 52.8 3.1 23 656-678 6-28 (194)
325 2wwf_A Thymidilate kinase, put 92.1 0.059 2E-06 54.4 2.6 24 655-678 9-32 (212)
326 1w4r_A Thymidine kinase; type 92.1 0.07 2.4E-06 53.5 3.0 114 644-781 11-129 (195)
327 2v3c_C SRP54, signal recogniti 92.1 0.13 4.3E-06 58.6 5.5 24 656-679 99-122 (432)
328 3trf_A Shikimate kinase, SK; a 92.0 0.057 2E-06 53.3 2.3 23 656-678 5-27 (185)
329 1nn5_A Similar to deoxythymidy 92.0 0.067 2.3E-06 54.1 2.7 25 654-678 7-31 (215)
330 1gtv_A TMK, thymidylate kinase 91.9 0.033 1.1E-06 56.5 0.3 21 658-678 2-22 (214)
331 2z0h_A DTMP kinase, thymidylat 91.9 0.058 2E-06 53.7 2.2 21 658-678 2-22 (197)
332 1nks_A Adenylate kinase; therm 91.9 0.063 2.2E-06 53.1 2.4 21 658-678 3-23 (194)
333 2wjg_A FEOB, ferrous iron tran 91.8 0.055 1.9E-06 53.3 1.9 22 657-678 8-29 (188)
334 2qen_A Walker-type ATPase; unk 91.8 0.32 1.1E-05 52.9 8.3 23 656-678 31-53 (350)
335 3ake_A Cytidylate kinase; CMP 91.8 0.061 2.1E-06 54.1 2.2 21 658-678 4-24 (208)
336 2zej_A Dardarin, leucine-rich 91.7 0.058 2E-06 53.2 1.9 21 658-678 4-24 (184)
337 2bjv_A PSP operon transcriptio 91.6 0.26 8.8E-06 51.8 7.0 23 657-679 30-52 (265)
338 1ukz_A Uridylate kinase; trans 91.6 0.083 2.8E-06 53.1 2.9 25 654-678 13-37 (203)
339 3zvl_A Bifunctional polynucleo 91.3 0.1 3.5E-06 59.1 3.7 33 646-678 248-280 (416)
340 2iut_A DNA translocase FTSK; n 91.3 0.091 3.1E-06 61.3 3.2 24 655-678 213-236 (574)
341 2bwj_A Adenylate kinase 5; pho 91.3 0.081 2.8E-06 52.7 2.5 24 655-678 11-34 (199)
342 1a7j_A Phosphoribulokinase; tr 91.2 0.075 2.6E-06 57.1 2.3 24 655-678 4-27 (290)
343 3a4m_A L-seryl-tRNA(SEC) kinas 91.1 0.086 2.9E-06 55.6 2.6 24 655-678 3-26 (260)
344 1xjc_A MOBB protein homolog; s 91.1 0.082 2.8E-06 51.9 2.2 22 657-678 5-26 (169)
345 1ojl_A Transcriptional regulat 91.0 0.3 1E-05 52.7 6.8 23 656-678 25-47 (304)
346 1e6c_A Shikimate kinase; phosp 90.9 0.076 2.6E-06 51.7 1.8 22 657-678 3-24 (173)
347 3ld9_A DTMP kinase, thymidylat 90.9 0.37 1.2E-05 49.5 7.0 25 654-678 19-43 (223)
348 1zak_A Adenylate kinase; ATP:A 90.8 0.093 3.2E-06 53.6 2.4 23 656-678 5-27 (222)
349 1zd8_A GTP:AMP phosphotransfer 90.7 0.095 3.2E-06 53.8 2.4 24 655-678 6-29 (227)
350 3t34_A Dynamin-related protein 90.7 0.91 3.1E-05 50.0 10.6 30 647-679 28-57 (360)
351 2pbr_A DTMP kinase, thymidylat 90.7 0.089 3E-06 52.1 2.1 21 658-678 2-22 (195)
352 2orw_A Thymidine kinase; TMTK, 90.7 0.11 3.6E-06 51.9 2.6 23 656-678 3-25 (184)
353 3fb4_A Adenylate kinase; psych 90.6 0.091 3.1E-06 53.3 2.2 21 658-678 2-22 (216)
354 1aky_A Adenylate kinase; ATP:A 90.6 0.1 3.5E-06 53.3 2.5 24 655-678 3-26 (220)
355 2iyv_A Shikimate kinase, SK; t 90.5 0.087 3E-06 52.0 1.8 22 657-678 3-24 (184)
356 2pt5_A Shikimate kinase, SK; a 90.3 0.1 3.5E-06 50.5 2.1 21 658-678 2-22 (168)
357 2cdn_A Adenylate kinase; phosp 90.3 0.12 4E-06 52.0 2.6 24 655-678 19-42 (201)
358 3pxg_A Negative regulator of g 90.2 0.19 6.3E-06 57.9 4.5 24 657-680 202-225 (468)
359 3dl0_A Adenylate kinase; phosp 90.2 0.11 3.6E-06 52.9 2.2 20 658-677 2-21 (216)
360 1sxj_B Activator 1 37 kDa subu 90.1 0.28 9.7E-06 52.7 5.7 21 659-679 45-65 (323)
361 1f6b_A SAR1; gtpases, N-termin 90.0 0.079 2.7E-06 53.1 1.0 32 646-678 16-47 (198)
362 2xb4_A Adenylate kinase; ATP-b 89.9 0.11 3.8E-06 53.2 2.1 21 658-678 2-22 (223)
363 1z6t_A APAF-1, apoptotic prote 89.8 0.6 2.1E-05 55.1 8.7 115 654-781 145-269 (591)
364 1uj2_A Uridine-cytidine kinase 89.7 0.13 4.5E-06 53.7 2.6 25 654-678 20-44 (252)
365 1w36_D RECD, exodeoxyribonucle 89.7 0.28 9.7E-06 58.3 5.7 23 656-678 164-186 (608)
366 1m2o_B GTP-binding protein SAR 89.7 0.13 4.5E-06 51.0 2.3 31 647-678 15-45 (190)
367 2grj_A Dephospho-COA kinase; T 89.7 0.12 4.3E-06 51.7 2.2 23 656-678 12-34 (192)
368 1r6b_X CLPA protein; AAA+, N-t 89.4 0.56 1.9E-05 57.3 8.2 26 655-680 206-231 (758)
369 2f6r_A COA synthase, bifunctio 89.4 0.15 5.3E-06 54.3 2.8 23 655-677 74-96 (281)
370 1sky_E F1-ATPase, F1-ATP synth 89.4 0.33 1.1E-05 55.3 5.5 29 653-681 148-176 (473)
371 1zuh_A Shikimate kinase; alpha 89.3 0.14 4.7E-06 49.7 2.1 22 657-678 8-29 (168)
372 3tlx_A Adenylate kinase 2; str 89.3 0.16 5.3E-06 53.0 2.6 24 655-678 28-51 (243)
373 1qvr_A CLPB protein; coiled co 89.2 0.29 9.9E-06 60.8 5.5 24 657-680 589-612 (854)
374 4ag6_A VIRB4 ATPase, type IV s 89.1 0.15 5.2E-06 57.1 2.7 25 656-680 35-59 (392)
375 1g5t_A COB(I)alamin adenosyltr 88.9 1.2 4.2E-05 44.5 8.7 50 734-787 119-173 (196)
376 2gno_A DNA polymerase III, gam 88.8 0.52 1.8E-05 50.8 6.5 102 656-780 18-123 (305)
377 4edh_A DTMP kinase, thymidylat 88.8 0.17 6E-06 51.6 2.6 24 655-678 5-28 (213)
378 1ltq_A Polynucleotide kinase; 88.8 0.16 5.3E-06 54.5 2.3 22 657-678 3-24 (301)
379 3te6_A Regulatory protein SIR3 88.8 0.75 2.6E-05 49.8 7.7 117 655-781 44-175 (318)
380 1e4v_A Adenylate kinase; trans 88.6 0.17 5.8E-06 51.4 2.3 21 658-678 2-22 (214)
381 2qtf_A Protein HFLX, GTP-bindi 88.4 0.16 5.6E-06 56.3 2.2 21 658-678 181-201 (364)
382 3v9p_A DTMP kinase, thymidylat 88.1 0.19 6.5E-06 51.9 2.3 24 655-678 24-47 (227)
383 3lv8_A DTMP kinase, thymidylat 88.1 0.21 7.1E-06 51.9 2.6 24 655-678 26-49 (236)
384 2qmh_A HPR kinase/phosphorylas 88.0 0.23 7.9E-06 49.9 2.7 23 655-677 33-55 (205)
385 2c9o_A RUVB-like 1; hexameric 88.0 0.25 8.4E-06 56.6 3.4 25 655-679 62-86 (456)
386 3umf_A Adenylate kinase; rossm 87.9 0.23 7.9E-06 50.8 2.8 25 654-678 27-51 (217)
387 3k53_A Ferrous iron transport 87.8 0.18 6.1E-06 53.3 2.0 22 657-678 4-25 (271)
388 1mky_A Probable GTP-binding pr 87.5 0.18 6.2E-06 57.5 1.9 23 657-679 181-203 (439)
389 1moz_A ARL1, ADP-ribosylation 87.5 0.19 6.6E-06 48.9 1.9 23 655-677 17-39 (183)
390 4tmk_A Protein (thymidylate ki 87.5 0.24 8.1E-06 50.6 2.6 23 656-678 3-25 (213)
391 3be4_A Adenylate kinase; malar 87.5 0.22 7.4E-06 50.8 2.3 23 656-678 5-27 (217)
392 1fzq_A ADP-ribosylation factor 87.4 0.2 6.9E-06 49.1 2.0 23 656-678 16-38 (181)
393 2ged_A SR-beta, signal recogni 87.3 0.21 7.3E-06 49.2 2.1 22 657-678 49-70 (193)
394 2fv8_A H6, RHO-related GTP-bin 87.3 0.23 7.8E-06 49.9 2.3 37 642-678 11-47 (207)
395 3exa_A TRNA delta(2)-isopenten 87.2 0.24 8.4E-06 53.4 2.5 23 656-678 3-25 (322)
396 3vkw_A Replicase large subunit 86.8 0.5 1.7E-05 53.4 4.9 24 654-677 159-182 (446)
397 2ocp_A DGK, deoxyguanosine kin 86.7 0.28 9.7E-06 50.7 2.7 23 656-678 2-24 (241)
398 3d3q_A TRNA delta(2)-isopenten 86.6 0.24 8.4E-06 54.1 2.2 22 657-678 8-29 (340)
399 2ce2_X GTPase HRAS; signaling 86.5 0.27 9.2E-06 46.6 2.2 21 658-678 5-25 (166)
400 1ak2_A Adenylate kinase isoenz 86.4 0.29 1E-05 50.4 2.6 24 655-678 15-38 (233)
401 2qag_A Septin-2, protein NEDD5 86.4 0.2 6.7E-06 55.6 1.3 20 659-678 40-59 (361)
402 2dyk_A GTP-binding protein; GT 86.4 0.25 8.7E-06 46.8 1.9 21 658-678 3-23 (161)
403 3crm_A TRNA delta(2)-isopenten 86.3 0.27 9.3E-06 53.3 2.4 22 657-678 6-27 (323)
404 1z2a_A RAS-related protein RAB 86.2 0.26 8.9E-06 47.0 1.9 21 658-678 7-27 (168)
405 1p5z_B DCK, deoxycytidine kina 86.1 0.32 1.1E-05 51.1 2.7 25 654-678 22-46 (263)
406 2h92_A Cytidylate kinase; ross 86.1 0.26 8.9E-06 50.0 2.0 22 657-678 4-25 (219)
407 2j37_W Signal recognition part 85.8 1.5 5.3E-05 50.5 8.4 24 655-678 100-123 (504)
408 3tmk_A Thymidylate kinase; pho 85.7 0.35 1.2E-05 49.4 2.7 24 655-678 4-27 (216)
409 3foz_A TRNA delta(2)-isopenten 85.7 0.31 1.1E-05 52.4 2.4 23 656-678 10-32 (316)
410 2ohf_A Protein OLA1, GTP-bindi 85.6 0.3 1E-05 54.6 2.2 26 654-679 20-45 (396)
411 3q72_A GTP-binding protein RAD 85.5 0.3 1E-05 46.6 2.0 20 658-677 4-23 (166)
412 1g16_A RAS-related protein SEC 85.4 0.33 1.1E-05 46.4 2.2 21 658-678 5-25 (170)
413 1ek0_A Protein (GTP-binding pr 85.4 0.31 1.1E-05 46.4 2.1 21 658-678 5-25 (170)
414 1z0j_A RAB-22, RAS-related pro 85.4 0.31 1.1E-05 46.5 2.1 21 658-678 8-28 (170)
415 1kao_A RAP2A; GTP-binding prot 85.4 0.3 1E-05 46.3 1.9 21 658-678 5-25 (167)
416 1u8z_A RAS-related protein RAL 85.3 0.31 1.1E-05 46.3 1.9 21 658-678 6-26 (168)
417 2erx_A GTP-binding protein DI- 85.2 0.31 1.1E-05 46.6 1.9 21 658-678 5-25 (172)
418 1z08_A RAS-related protein RAB 85.2 0.31 1.1E-05 46.6 1.9 21 658-678 8-28 (170)
419 2lkc_A Translation initiation 85.2 0.37 1.3E-05 46.5 2.5 24 655-678 7-30 (178)
420 1ky3_A GTP-binding protein YPT 85.2 0.31 1.1E-05 47.1 1.9 21 658-678 10-30 (182)
421 3sr0_A Adenylate kinase; phosp 85.0 0.34 1.2E-05 49.1 2.2 21 658-678 2-22 (206)
422 1wms_A RAB-9, RAB9, RAS-relate 84.9 0.33 1.1E-05 46.9 1.9 20 658-677 9-28 (177)
423 2cxx_A Probable GTP-binding pr 84.7 0.35 1.2E-05 47.3 2.1 20 659-678 4-23 (190)
424 1svi_A GTP-binding protein YSX 84.7 0.47 1.6E-05 46.7 3.1 23 656-678 23-45 (195)
425 2nzj_A GTP-binding protein REM 84.7 0.34 1.2E-05 46.6 1.9 20 658-677 6-25 (175)
426 3q85_A GTP-binding protein REM 84.6 0.34 1.2E-05 46.3 1.9 20 658-677 4-23 (169)
427 3tw8_B RAS-related protein RAB 84.6 0.33 1.1E-05 46.9 1.8 21 658-678 11-31 (181)
428 1c1y_A RAS-related protein RAP 84.5 0.35 1.2E-05 46.0 1.9 21 658-678 5-25 (167)
429 3pxi_A Negative regulator of g 84.4 1.3 4.4E-05 54.2 7.4 23 658-680 523-545 (758)
430 3pqc_A Probable GTP-binding pr 84.4 0.36 1.2E-05 47.3 2.0 22 657-678 24-45 (195)
431 3pxi_A Negative regulator of g 84.3 0.48 1.6E-05 58.0 3.4 24 657-680 202-225 (758)
432 2fn4_A P23, RAS-related protei 84.2 0.39 1.3E-05 46.4 2.2 22 657-678 10-31 (181)
433 3a8t_A Adenylate isopentenyltr 84.0 0.45 1.5E-05 51.9 2.7 24 655-678 39-62 (339)
434 1upt_A ARL1, ADP-ribosylation 84.0 0.37 1.3E-05 46.1 1.9 22 657-678 8-29 (171)
435 2y8e_A RAB-protein 6, GH09086P 83.9 0.4 1.4E-05 46.2 2.1 20 658-677 16-35 (179)
436 3ihw_A Centg3; RAS, centaurin, 83.8 0.38 1.3E-05 47.3 1.9 20 658-677 22-41 (184)
437 2r62_A Cell division protease 83.8 0.21 7.3E-06 52.4 0.0 22 658-679 46-67 (268)
438 3tqf_A HPR(Ser) kinase; transf 83.6 0.51 1.8E-05 46.2 2.6 22 655-676 15-36 (181)
439 2xxa_A Signal recognition part 83.5 1.9 6.5E-05 48.8 7.7 25 654-678 98-122 (433)
440 1m7b_A RND3/RHOE small GTP-bin 83.4 0.43 1.5E-05 46.7 2.1 21 658-678 9-29 (184)
441 1r2q_A RAS-related protein RAB 83.4 0.42 1.4E-05 45.6 1.9 21 658-678 8-28 (170)
442 1r6b_X CLPA protein; AAA+, N-t 83.3 1.6 5.4E-05 53.3 7.6 23 658-680 490-512 (758)
443 4dsu_A GTPase KRAS, isoform 2B 83.3 0.42 1.4E-05 46.6 1.9 21 658-678 6-26 (189)
444 2a9k_A RAS-related protein RAL 83.3 0.42 1.4E-05 46.4 1.9 21 658-678 20-40 (187)
445 2oil_A CATX-8, RAS-related pro 83.2 0.43 1.5E-05 47.0 2.0 21 658-678 27-47 (193)
446 2bme_A RAB4A, RAS-related prot 83.2 0.44 1.5E-05 46.4 2.1 21 658-678 12-32 (186)
447 1nrj_B SR-beta, signal recogni 83.2 0.44 1.5E-05 48.0 2.1 22 657-678 13-34 (218)
448 1vt4_I APAF-1 related killer D 83.1 3.6 0.00012 51.4 10.3 114 656-783 150-279 (1221)
449 1z0f_A RAB14, member RAS oncog 83.1 0.45 1.5E-05 45.8 2.1 22 657-678 16-37 (179)
450 2wsm_A Hydrogenase expression/ 83.0 0.49 1.7E-05 47.8 2.4 23 656-678 30-52 (221)
451 3b1v_A Ferrous iron uptake tra 83.0 0.45 1.5E-05 50.4 2.2 22 657-678 4-25 (272)
452 3bc1_A RAS-related protein RAB 83.0 0.44 1.5E-05 46.6 1.9 21 658-678 13-33 (195)
453 3con_A GTPase NRAS; structural 82.9 0.44 1.5E-05 46.7 1.9 21 658-678 23-43 (190)
454 1r8s_A ADP-ribosylation factor 82.9 0.45 1.5E-05 45.2 1.9 20 659-678 3-22 (164)
455 3cbq_A GTP-binding protein REM 82.8 0.44 1.5E-05 47.4 1.9 20 658-677 25-44 (195)
456 2hxs_A RAB-26, RAS-related pro 82.7 0.46 1.6E-05 45.9 1.9 21 658-678 8-28 (178)
457 2efe_B Small GTP-binding prote 82.4 0.47 1.6E-05 45.9 1.9 21 658-678 14-34 (181)
458 3eph_A TRNA isopentenyltransfe 82.4 0.55 1.9E-05 52.4 2.6 22 657-678 3-24 (409)
459 4hlc_A DTMP kinase, thymidylat 82.3 0.55 1.9E-05 47.5 2.4 23 656-678 2-24 (205)
460 3kkq_A RAS-related protein M-R 82.3 0.48 1.7E-05 46.0 1.9 20 658-677 20-39 (183)
461 3t5g_A GTP-binding protein RHE 82.2 0.51 1.7E-05 45.8 2.1 20 658-677 8-27 (181)
462 1zcb_A G alpha I/13; GTP-bindi 82.1 0.5 1.7E-05 52.3 2.2 22 656-677 33-54 (362)
463 3hjn_A DTMP kinase, thymidylat 82.0 2.4 8.3E-05 42.3 7.1 21 658-678 2-22 (197)
464 1vg8_A RAS-related protein RAB 81.9 0.52 1.8E-05 46.9 2.1 21 658-678 10-30 (207)
465 2bov_A RAla, RAS-related prote 81.9 0.5 1.7E-05 46.9 1.9 21 658-678 16-36 (206)
466 2g6b_A RAS-related protein RAB 81.8 0.53 1.8E-05 45.5 2.1 21 658-678 12-32 (180)
467 2fg5_A RAB-22B, RAS-related pr 81.8 0.55 1.9E-05 46.3 2.2 21 658-678 25-45 (192)
468 3t1o_A Gliding protein MGLA; G 81.7 0.51 1.7E-05 46.3 1.9 20 658-677 16-35 (198)
469 3clv_A RAB5 protein, putative; 81.7 0.74 2.5E-05 45.2 3.1 22 657-678 8-29 (208)
470 2ew1_A RAS-related protein RAB 81.6 0.55 1.9E-05 47.0 2.1 21 658-678 28-48 (201)
471 1mh1_A RAC1; GTP-binding, GTPa 81.6 0.53 1.8E-05 45.7 1.9 21 658-678 7-27 (186)
472 1ksh_A ARF-like protein 2; sma 81.5 0.53 1.8E-05 45.9 1.9 23 656-678 18-40 (186)
473 3tkl_A RAS-related protein RAB 81.5 0.53 1.8E-05 46.3 1.9 21 658-678 18-38 (196)
474 2gf0_A GTP-binding protein DI- 81.5 0.58 2E-05 46.1 2.2 22 657-678 9-30 (199)
475 2h57_A ADP-ribosylation factor 81.5 0.55 1.9E-05 46.1 2.0 22 657-678 22-43 (190)
476 1c9k_A COBU, adenosylcobinamid 81.4 0.55 1.9E-05 46.4 2.0 21 658-678 1-21 (180)
477 2gf9_A RAS-related protein RAB 81.4 0.56 1.9E-05 46.0 2.1 21 658-678 24-44 (189)
478 2o52_A RAS-related protein RAB 81.3 0.57 1.9E-05 46.6 2.1 20 658-677 27-46 (200)
479 2hf9_A Probable hydrogenase ni 81.1 0.61 2.1E-05 47.3 2.3 23 656-678 38-60 (226)
480 3dz8_A RAS-related protein RAB 81.0 0.59 2E-05 46.0 2.1 21 658-678 25-45 (191)
481 1zj6_A ADP-ribosylation factor 80.8 0.61 2.1E-05 45.6 2.1 23 656-678 16-38 (187)
482 3bwd_D RAC-like GTP-binding pr 80.7 0.7 2.4E-05 44.7 2.5 22 657-678 9-30 (182)
483 3oes_A GTPase rhebl1; small GT 80.6 0.62 2.1E-05 46.3 2.1 23 656-678 24-46 (201)
484 2h17_A ADP-ribosylation factor 80.4 0.6 2.1E-05 45.5 1.9 22 657-678 22-43 (181)
485 1ofh_A ATP-dependent HSL prote 80.4 0.64 2.2E-05 49.5 2.3 23 657-679 51-73 (310)
486 2bcg_Y Protein YP2, GTP-bindin 80.4 0.66 2.3E-05 46.2 2.2 21 658-678 10-30 (206)
487 2il1_A RAB12; G-protein, GDP, 80.3 0.61 2.1E-05 46.0 1.9 21 658-678 28-48 (192)
488 2a5j_A RAS-related protein RAB 80.3 0.61 2.1E-05 45.9 1.9 21 658-678 23-43 (191)
489 2xtz_A Guanine nucleotide-bind 80.2 0.65 2.2E-05 51.2 2.2 21 658-678 11-31 (354)
490 1gwn_A RHO-related GTP-binding 80.1 0.66 2.3E-05 46.6 2.1 22 657-678 29-50 (205)
491 2cjw_A GTP-binding protein GEM 79.9 0.65 2.2E-05 46.0 1.9 21 658-678 8-28 (192)
492 2r2a_A Uncharacterized protein 79.9 0.72 2.5E-05 46.4 2.3 20 657-676 6-25 (199)
493 3reg_A RHO-like small GTPase; 79.9 0.67 2.3E-05 45.6 2.1 21 658-678 25-45 (194)
494 2fu5_C RAS-related protein RAB 79.9 0.57 1.9E-05 45.5 1.5 21 658-678 10-30 (183)
495 1z06_A RAS-related protein RAB 79.8 0.66 2.2E-05 45.5 1.9 22 657-678 21-42 (189)
496 1zd9_A ADP-ribosylation factor 79.8 0.66 2.3E-05 45.5 1.9 22 657-678 23-44 (188)
497 4djt_A GTP-binding nuclear pro 79.6 0.62 2.1E-05 46.9 1.7 21 658-678 13-33 (218)
498 2atv_A RERG, RAS-like estrogen 79.6 0.67 2.3E-05 45.8 1.9 22 657-678 29-50 (196)
499 2b6h_A ADP-ribosylation factor 79.6 0.69 2.4E-05 45.7 2.0 22 656-677 29-50 (192)
500 2iwr_A Centaurin gamma 1; ANK 79.6 0.71 2.4E-05 44.6 2.1 21 658-678 9-29 (178)
No 1
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=3.1e-152 Score=1404.48 Aligned_cols=906 Identities=43% Similarity=0.740 Sum_probs=763.3
Q ss_pred CcccchhhhccccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCC-CCCCccccccCHhHH
Q 002306 8 LPELKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGT-GSDALSSVSVSKNMF 85 (938)
Q Consensus 8 ~~~~~~~~~~~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~-~~~~~pm~gvp~~~~ 85 (938)
.+.+++|.++++|||+||++||++ ||||+|||+|||||+|++||+.+|+++++|+++++++|. +..++|+|++|+|++
T Consensus 6 ~~~~~~~~~~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~ 85 (934)
T 3thx_A 6 KETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNF 85 (934)
T ss_dssp ------CTHHHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHH
T ss_pred ccccCcccccccHHHHHHHhccccCCCeEEEEEcCCeeeeehhhHHHHHHHHhhhhhhhhccCCCCCCCCCeeeeCHHHH
Confidence 345778999999999999999999 999999999999999999999999999999998888876 567899999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEeccC-------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEE
Q 002306 86 ETIARDLLLERTDHTLELYEGSG-------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLG 158 (938)
Q Consensus 86 ~~yl~~Lv~~~G~~kVaI~eQ~e-------~~R~v~riiTPGt~~~~ed~l~~~~~~~~~nyL~aI~~~~~~~~~~iGla 158 (938)
+.|++++|+.+| ||||||||.+ ++|+|+|++||||++++||.++.+.+...++||+||.+...++...||+|
T Consensus 86 ~~~l~~~Ll~~g-~rVei~~q~~~~~~~~~~~r~l~~~~TPGnl~~~ed~L~~~~d~~~~~~l~AIk~~~~~~~~~~Gla 164 (934)
T 3thx_A 86 ESFVKDLLLVRQ-YRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVG 164 (934)
T ss_dssp HHHHHHHHHTTC-CEEEEEEECC----CCCCCEEEEEEEBTTBCTTCHHHHC--------CCEEEEEECCSSSSCEEEEE
T ss_pred HHHHHHHHHHcC-CEEEEEecCCcccccCccceEEEEEECCCcHHHHHHHhhccccccccceEEEEEEeecCCCcEEEEE
Confidence 999998334999 9999999965 48999999999999999999886545566899999988544446789999
Q ss_pred EEecCCceEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHH
Q 002306 159 YVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDR 238 (938)
Q Consensus 159 ~~D~stG~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~l~~ 238 (938)
|+|+|||+|.+++|.|+..|++|.++|.+++|+|||+|++.. +....++..++..+++.++..+.+.|+...+.+.+.+
T Consensus 165 ~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~ 243 (934)
T 3thx_A 165 YVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGET-AGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNR 243 (934)
T ss_dssp EEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSEEEEESSCC-CHHHHHHHHHHHHHTCEEEEECGGGGCCSSHHHHHHH
T ss_pred EEECCCCeEEEEecCCchHHHHHHHHHHhCCCeEEEeeCCCC-cccHHHHHHHHhhcCceEEecchhhcCHHHHHHHHHH
Confidence 999999999999999998899999999999999999997632 2233455555666677778889999998888888888
Q ss_pred hhcCCC----CCCccccCCcchHHHHHHHHHHHHHHhcccCCCCcceeEEeccCCeEEecHHHHHHcccccccCCCC-cc
Q 002306 239 LVRGSV----EPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDAN-KN 313 (938)
Q Consensus 239 ~~~~~~----~~~~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LEI~~~~~~~~-~~ 313 (938)
+++... ...+++..+.+++++|+||||+||+.+++..+++.+.+..+..+++|.||++|++||||++|.++++ ++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~a~gall~Yl~~~~~~~~~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~~ 323 (934)
T 3thx_A 244 LLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGS 323 (934)
T ss_dssp HBCCCTTSCCCGGGCGGGGCHHHHHHHHHHHHHHTGGGCGGGTTCBEEEECCGGGBCEECHHHHHHTTSCC---------
T ss_pred HhccccccccccccccccccHHHHHHHHHHHHHHHHhcCccccccccceEEcCCCeEEeCHHHHhhccccccCCCCCCCC
Confidence 775211 1223343456789999999999999998766777788889999999999999999999999887643 47
Q ss_pred ccHHHHhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHH-HhccCCcHHHHHHHHHhccCCHH
Q 002306 314 FSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQ-HLKRISDIERLMHNLEKRRAGLQ 392 (938)
Q Consensus 314 gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~-~Lk~i~DleRll~ri~~~~~~~~ 392 (938)
||||++||| |+||||+|+||+||++||+|+++|++|||+|++|+++..++..++. .|+++||+||+++|+..++++++
T Consensus 324 ~SL~~~ld~-t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~~~~ 402 (934)
T 3thx_A 324 QSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQ 402 (934)
T ss_dssp CCHHHHHCC-CSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTCCCHH
T ss_pred CcHHHHhcc-CCCHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCHH
Confidence 899999999 9999999999999999999999999999999999999999999998 69999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCcccccCcccccCCCChhHHH
Q 002306 393 QIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSA 472 (938)
Q Consensus 393 dl~~l~~~l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~~~~~~~I~~~~d~~Ld~ 472 (938)
|++++++++..++.+.+.|..........+...++.++.+.. +.+.++.++|+++||.+...++.++|++|||++||+
T Consensus 403 dl~~l~~~l~~~~~l~~~l~~~~~~~~~~l~~~~~~~l~~~~--~~l~~~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~ 480 (934)
T 3thx_A 403 DCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLR--SDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE 480 (934)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCCSSSTTGGGGTHHHHHHHH--HHHHHHHHHHHTTBCTTGGGTTCCCBCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH--hhHHHHHHHHHHHhCcchhhcCCceeCCCCCHHHHH
Confidence 999999999999999999876542222333333455555555 678899999999999988755458999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHHH
Q 002306 473 LKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKK 552 (938)
Q Consensus 473 lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~ 552 (938)
+|+.+++++++|.+++++++++++++..+++|+.|++++||||+|+++....++.+.+ |++++++++++||+|+++++
T Consensus 481 lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~--~~~~~t~~~~~rf~t~el~~ 558 (934)
T 3thx_A 481 LREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKN--FSTVDIQKNGVKFTNSKLTS 558 (934)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSS--CEEEEEC--CEEEECTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEEeccceEEEEEEechhhccCCCCC--cEEEEcccCeEEEECHHHHH
Confidence 9999999999999999999999998766789999999999999998765444443344 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccc
Q 002306 553 LGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSR 632 (938)
Q Consensus 553 l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~r 632 (938)
+++++.++++++.+++.+++.+|.+.+..|.+.|+.+++++|+|||++|||.+|...+++||||++++.+.+.+.|++||
T Consensus 559 l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~i~i~~~r 638 (934)
T 3thx_A 559 LNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASR 638 (934)
T ss_dssp HHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTTSCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccCCCcceEeecCc
Confidence 99999999999999999999999999999999999999999999999999999986667999999987433469999999
Q ss_pred cceEeeccCcccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhh
Q 002306 633 HPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712 (938)
Q Consensus 633 hp~~~~~~~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~ 712 (938)
||+++...+..|||||++|+.+.|++++||||||||||||||++|++.+++|+|+|||+..+.+++++++|+++|+.|++
T Consensus 639 HP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l 718 (934)
T 3thx_A 639 HACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQ 718 (934)
T ss_dssp CTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC-----
T ss_pred cchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhH
Confidence 99998655567999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhccccc
Q 002306 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEF 792 (938)
Q Consensus 713 ~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~ 792 (938)
..+.|+||+||.+++.|++.+++|+||||||||+||||.++.++++++++++.++.|+++||+|||++++.++++
T Consensus 719 ~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~----- 793 (934)
T 3thx_A 719 LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQ----- 793 (934)
T ss_dssp ----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGT-----
T ss_pred HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999987469999999999999999998
Q ss_pred ccccccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCCCcchhhhh
Q 002306 793 NTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPSAVISDDAKIE 872 (938)
Q Consensus 793 ~~~~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~~~~~~~~~~~~~~ 872 (938)
.+.+.|+||.+... .+.++|+|++.+|++++||||+||+++|+|++||+||++++++||+........ ...
T Consensus 794 ----~~~v~ng~v~~~~~--~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~~~~~~~~~---~~~ 864 (934)
T 3thx_A 794 ----IPTVNNLHVTALTT--EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQ---GYD 864 (934)
T ss_dssp ----CTTEEEEEEEEEEE--TTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTTTTC-----------
T ss_pred ----cceeEeeEEEEEec--CCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccc---ccc
Confidence 89999999998877 788999999999999999999999999999999999999999999765321100 000
Q ss_pred hcccccCCCCCcccccchhhhHHHHHHHccCCCCCCCHHHHHHHHHHHHHHhhhhhcCCchhhhc
Q 002306 873 VGSKRKRISDPNDMSRGAARAHQFLKEFSDMPLETMDLKEALERVKRMKDDLEKDAGDCCWLQQF 937 (938)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~l~~~~~~~~~~~~~~~~~~~~ 937 (938)
.... ....+......+.+..++++++|+++|+++|||.||+++|++||++++. .+|.|++.+
T Consensus 865 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~tp~eal~~l~~l~~~~~~--~~~~~~~~~ 926 (934)
T 3thx_A 865 IMEP-AAKKCYLEREQGEKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIA--KNNSFVNEI 926 (934)
T ss_dssp --------CCSHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHHHH--TCCHHHHHH
T ss_pred cccc-ccccccccccccchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHh--hCCHHHHHH
Confidence 0000 0000011111233455689999999999999999999999999999888 999999985
No 2
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=4.7e-143 Score=1310.29 Aligned_cols=780 Identities=27% Similarity=0.403 Sum_probs=691.5
Q ss_pred hccccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCC-CCCCccccccCHhHHHHHHHHHH
Q 002306 16 KQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGT-GSDALSSVSVSKNMFETIARDLL 93 (938)
Q Consensus 16 ~~~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~-~~~~~pm~gvp~~~~~~yl~~Lv 93 (938)
++.||||+|||+||++ |||||||||||||||||+||+++|++|+++ ||.+++ ...++||||||+|+++.|+++||
T Consensus 8 ~~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~---lt~r~~~~~~~~pm~GvP~~~~~~yl~~Lv 84 (800)
T 1wb9_A 8 DAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDIS---LTKRGASAGEPIPMAGIPYHAVENYLAKLV 84 (800)
T ss_dssp GGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCC---CEEECCSSSCCEEEEEEEGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCcE---EeccccCCCCcCCccCCCHHHHHHHHHHHH
Confidence 5689999999999999 999999999999999999999999999999 666654 34679999999999999999998
Q ss_pred hhcCCeEEEEEeccC--------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecCCc
Q 002306 94 LERTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKR 165 (938)
Q Consensus 94 ~~~G~~kVaI~eQ~e--------~~R~v~riiTPGt~~~~ed~l~~~~~~~~~nyL~aI~~~~~~~~~~iGla~~D~stG 165 (938)
++| ||||||||+| ++|+|+||+||||++ |+.++ +..++|||+||.+. ...+|+||+|+|||
T Consensus 85 -~~G-~kVai~eQ~e~~~~~k~~v~R~v~~v~TpGT~~--~~~~l---~~~~~n~l~ai~~~----~~~~Gla~~D~stg 153 (800)
T 1wb9_A 85 -NQG-ESVAICEQIGDPATSKGPVERKVVRIVTPGTIS--DEALL---QERQDNLLAAIWQD----SKGFGYATLDISSG 153 (800)
T ss_dssp -HTT-CCEEEEEECSCGGGCSSSCCEEEEEEECTTTCC--CGGGS---CTTSCCCEEEEEEC----SSCEEEEEECTTTC
T ss_pred -HCC-CeEEEEEccCCccccCCcceEEEEEEecCCccc--ccccc---cCCCCcEEEEEEEc----CCEEEEEEEECCCC
Confidence 999 9999999998 599999999999984 66666 56789999999864 24799999999999
Q ss_pred eEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCCCC
Q 002306 166 VLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVE 245 (938)
Q Consensus 166 ~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~l~~~~~~~~~ 245 (938)
+|++++|.| +++|.++|.+++|+|||++++... . . +......++.++.+.|+...+.+.+.++|+ ..+
T Consensus 154 ~~~~~~~~d---~~~l~~~l~~~~P~Eil~~~~~~~-~---~----l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~-~~~ 221 (800)
T 1wb9_A 154 RFRLSEPAD---RETMAAELQRTNPAELLYAEDFAE-M---S----LIEGRRGLRRRPLWEFEIDTARQQLNLQFG-TRD 221 (800)
T ss_dssp CEEEECCCS---HHHHHHHHHHHCCSEEEEETTCCC-G---G----GTTTCSSEEEECGGGGCHHHHHHHHHHHHT-CSC
T ss_pred EEEEEEecC---HHHHHHHHHhcCCeEEEEcCCCCh-H---H----HhhcccceEEccccccChhHHHHHHHHHhC-ccc
Confidence 999999987 789999999999999999976321 1 1 111112355667889998888888998887 344
Q ss_pred CCccccCCcchHHHHHHHHHHHHHHhcccCCCCcceeEEeccCCeEEecHHHHHHcccccccCCCCccccHHHHhhhhcc
Q 002306 246 PVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCT 325 (938)
Q Consensus 246 ~~~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~ 325 (938)
+.+++..+.+.+++|+|+||+||+.++.....+...+..+..+++|.||.+|++||||+++.+++ ++||||+++|+ |+
T Consensus 222 l~~~~~~~~~~~~~a~gall~Yl~~~~~~~~~~~~~~~~~~~~~~m~ld~~t~~~LEl~~~~~~~-~~gSL~~ll~~-t~ 299 (800)
T 1wb9_A 222 LVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGG-AENTLASVLDC-TV 299 (800)
T ss_dssp SGGGTCTTCHHHHHHHHHHHHHHHHHHCSCCTTCCCCEECCGGGBCEECHHHHHHTTSSSCTTSC-STTSHHHHHCC-CS
T ss_pred hhhccccCcHHHHHHHHHHHHHHHHhhhhccccccccEEEccCCEEEecHHHHHhccCcccCCCC-ccccHHHHhCC-Cc
Confidence 56676666788999999999999999875555666788899999999999999999999987654 47899999999 99
Q ss_pred CchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCcHHHHHHHHHhccCCHHHHHHHHHHHHhHH
Q 002306 326 AGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLP 405 (938)
Q Consensus 326 T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~ 405 (938)
|+||+|+||+||++||+|.++|++|||+|++|++ ++..++..|++++|++|+++|+..++++++|+..+++++..++
T Consensus 300 T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~---~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~~ 376 (800)
T 1wb9_A 300 TPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD---FTAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLP 376 (800)
T ss_dssp SHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG---GHHHHHHHHHTTCSHHHHHHHHHHTCCCHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHhcCCccHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCccc--ccCcccccCCCChhHHHHHHHHHHHHHH
Q 002306 406 YIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQL--ENGEYMISSSYDTGLSALKNEQESLERQ 483 (938)
Q Consensus 406 ~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~--~~~~~~I~~~~d~~Ld~lr~~~~~~~~~ 483 (938)
.+.+.+.... ...+..+.+.+ +.+.++.+.|+++||.+++ ..+++.|++|||++||++|+.+++.+++
T Consensus 377 ~l~~~l~~~~--------~~~L~~l~~~l--~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~ 446 (800)
T 1wb9_A 377 ELRAQLETVD--------SAPVQALREKM--GEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDY 446 (800)
T ss_dssp HHHHHHHSCC--------CHHHHHHHHHH--CCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--------cHHHHHHHHhc--ccHHHHHHHHHHHhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHH
Confidence 9999886531 12233333334 5678899999999998864 3456899999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHHHHHHHHHHHHHH
Q 002306 484 IHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEE 563 (938)
Q Consensus 484 l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~ 563 (938)
|.++.+++++.++++ +++++|++++||+|+|+++....+| .+ |+..++.++..||+|++++++++++.+++++
T Consensus 447 l~~~~~~~~~~~~~~---~l~i~~~~~~gy~i~V~~~~~~~vp--~~--~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~ 519 (800)
T 1wb9_A 447 LERLEVRERERTGLD---TLKVGFNAVHGYYIQISRGQSHLAP--IN--YMRRQTLKNAERYIIPELKEYEDKVLTSKGK 519 (800)
T ss_dssp HHHHHHHHHHHHTCT---TCEEEEETTTEEEEEEEHHHHTTSC--TT--CEEEEECSSEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---ceEEEecCcceEEEEEeccccccCC--cc--eEEeeeccCCCEEeCHHHHHHHHHHHHHHHH
Confidence 999999999999986 8999999999999999987766676 34 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeeccCcc
Q 002306 564 YKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVN 643 (938)
Q Consensus 564 ~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~ 643 (938)
+..++.+++.+|.+.+..+.+.|..+++++|+|||++|||.+|.. ++||||+++++ +.+.|++||||+++...+..
T Consensus 520 ~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~--~~i~i~~~rHP~le~~~~~~ 595 (800)
T 1wb9_A 520 ALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYT--LNYTCPTFIDK--PGIRITEGRHPVVEQVLNEP 595 (800)
T ss_dssp HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCBCCEECSS--SCEEEEEECCTTHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcccEECCC--CCEEEEeccccEEEccCCCc
Confidence 999999999999999999999999999999999999999999987 68999999875 35999999999998644567
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEM 723 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 723 (938)
+|+||++|+ ++|++++||||||||||||||+++++.+++|+|++||+..+.+++++++|+++|..|++..+.|+|+.||
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~ 674 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEM 674 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHH
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHH
Confidence 999999999 8899999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEE
Q 002306 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANY 803 (938)
Q Consensus 724 ~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~ 803 (938)
.+++.+++.+++|+|+||||||+|||+.++.++++++++++.++.|+++||+|||++++.++++ .+++.|+
T Consensus 675 ~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~---------~~~v~n~ 745 (800)
T 1wb9_A 675 TETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK---------MEGVANV 745 (800)
T ss_dssp HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH---------STTEEEE
T ss_pred HHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhh---------hhceEEE
Confidence 9999999999999999999999999999999999999999987458999999999999999998 8999999
Q ss_pred EEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 002306 804 HVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 859 (938)
Q Consensus 804 ~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~ 859 (938)
||.+..+ +++++|+||+.+|+|++||||+||+++|+|++||+||++++++||+.
T Consensus 746 ~~~~~~~--~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~le~~ 799 (800)
T 1wb9_A 746 HLDALEH--GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 (800)
T ss_dssp EEEEEEE--TTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEc--CCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 9999877 77899999999999999999999999999999999999999999975
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=3.2e-141 Score=1302.22 Aligned_cols=798 Identities=23% Similarity=0.337 Sum_probs=648.4
Q ss_pred hccccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCCCCCccccccCHhHHHHHHHHHHh
Q 002306 16 KQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLLL 94 (938)
Q Consensus 16 ~~~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~~~~~pm~gvp~~~~~~yl~~Lv~ 94 (938)
.+.||||+|||+||++ ||+|||||||||||||||||+++|++|+|+ ++.++ ++||||||+|+++.|+++||
T Consensus 11 ~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~---lt~~~----~~pmaGvP~ha~~~yl~rLv- 82 (918)
T 3thx_B 11 SIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIY---CHLDH----NFMTASIPTHRLFVHVRRLV- 82 (918)
T ss_dssp TTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCC---CEEET----TEEEEEEEGGGHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEEcCCEeeeeHhhHHHHHHHhCce---eecCC----CeeEEeccHhHHHHHHHHHH-
Confidence 3589999999999999 999999999999999999999999999998 55543 59999999999999999999
Q ss_pred hcCCeEEEEEeccC--------------CcceeEEecCCCCcccccccc---------------ccCCCCCCCcEEEEEe
Q 002306 95 ERTDHTLELYEGSG--------------SNWRLVKSGTPGNLGSYEDVL---------------FANNEMQDTPVIVALF 145 (938)
Q Consensus 95 ~~G~~kVaI~eQ~e--------------~~R~v~riiTPGt~~~~ed~l---------------~~~~~~~~~nyL~aI~ 145 (938)
++| ||||||||+| ++|+||||+||||++ ++.+ + +..+||||+||.
T Consensus 83 ~~G-~kVai~eQ~E~p~~k~~~~~k~~~v~R~v~rvvTpGT~~--d~~~~~~~~~~~~~~~~~~l---~~~~~nyL~ai~ 156 (918)
T 3thx_B 83 AKG-YKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLI--GEDVNPLIKLDDAVNVDEIM---TDTSTSYLLCIS 156 (918)
T ss_dssp HHT-CCEEEEEECSCHHHHTTSTTCSSCCCEEEEEEECTTCCC--STTTCCEEEC--CEEECCCS---CTTSCCCEEEEE
T ss_pred HcC-CcEEEEeccCChhhhhcccccCCceeeeEEEEECCCccc--cccccccccccccccccccc---CCCCCcEEEEEE
Confidence 999 9999999987 479999999999985 4544 3 357899999998
Q ss_pred ecccc------CCceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhh-----h
Q 002306 146 PNFRE------NGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALT-----R 214 (938)
Q Consensus 146 ~~~~~------~~~~iGla~~D~stG~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~-----~ 214 (938)
+.... +...||+||+|+|||+|.+++|.|+..++.|.+.|.+++|+|||++++. ......+.+.+. .
T Consensus 157 ~~~~~~~~~~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~~--~~~~~~~~~~~~~~~~~~ 234 (918)
T 3thx_B 157 ENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSAL--SEQTEALIHRATSVSVQD 234 (918)
T ss_dssp EEC---------CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESSC--CHHHHHHHHHHHHSSCSS
T ss_pred ecccccccccccCceEEEEEEEccCCeEEEEEecCchhHHHHHHHHHhcCCeEEEecCCc--chHHHHHHHhhhcccccc
Confidence 64321 1236999999999999999999998888899999999999999999752 122222222111 1
Q ss_pred cCceeeecccccccchhHHHHHHHhhcCCCCCCccccC-------CcchHHHHHHHHHHHHHHhcccCC-CCcceeEEe-
Q 002306 215 CGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVS-------GFEIAPGALGALLSYAELLSDESN-YGNYYIRKY- 285 (938)
Q Consensus 215 ~~~~i~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~a~~AlgaLL~YL~~~~~~~~-~~~~~i~~~- 285 (938)
....++..+.+.|....+.+.+.++|+. ..+.+++.. ....+++|+|++|+||+.++.... .+.-.+..+
T Consensus 235 ~~~~~~~~~~~~f~~~~a~~~l~~~f~~-~~l~~~g~~~~~~~~~~~~~~~~A~gall~Yl~~~~~~~~l~~~~~~~~~~ 313 (918)
T 3thx_B 235 DRIRVERMDNIYFEYSHAFQAVTEFYAK-DTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLS 313 (918)
T ss_dssp SCCEEEEECGGGTSHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHHHHHHHHTTCGGGGSCGGGEEESC
T ss_pred cceeEEeccccccChhHHHHHHHHHhCc-cccccccchhhhhhhcccHHHHHHHHHHHHHHHHhcccccccccccceeec
Confidence 1234566778889888888888888863 222222221 124688999999999998875332 222334445
Q ss_pred ccCCeEEecHHHHHHcccccccCCCCccccHHHHhhhhccCchHHHHHHHHhhCcCCCHHHHHHHHHHHHHHH-hChHHH
Q 002306 286 SLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV-DDTALR 364 (938)
Q Consensus 286 ~~~~~M~LD~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~-~~~~l~ 364 (938)
..+++|.||++|++||||++|.++++++|||||+||| |+||||+||||+||++||+|+++|++|||+|++|+ ++..++
T Consensus 314 ~~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~-t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~ 392 (918)
T 3thx_B 314 SKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDH-TKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVF 392 (918)
T ss_dssp CTTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCC-CSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHH
T ss_pred CCCCEEEECHHHHHhcCCcccCCCCCCCCcHHHHHhh-CCChHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHH
Confidence 5778999999999999999999888888999999999 99999999999999999999999999999999997 466788
Q ss_pred HHHHHHhccCCcHHHHHHHHHhccCCHHHHHHHHHHHHhHH-HHHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHH
Q 002306 365 QDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLP-YIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFI 443 (938)
Q Consensus 365 ~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~-~i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~ 443 (938)
..++..|+++||+||+++|+..++++|+|++.+++++..++ .+...+..........+...+...+.+.. ..+..+.
T Consensus 393 ~~l~~~L~~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~~l~~~l~~~~~~~~~~lL~~~~~~~~~~~--~~~~~~~ 470 (918)
T 3thx_B 393 GQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELL--SPVEHYL 470 (918)
T ss_dssp HHHHHTTTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHT--GGGHHHH
T ss_pred HHHHHHHccCccHHHHHHHhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHhhhhhH--HHHHHHH
Confidence 99999999999999999999999999999999999998877 44444432211111111111112222111 2223332
Q ss_pred HHHHhhcCCccccc--CcccccCC-CChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceee--EEEEEe
Q 002306 444 ALVETSVDLDQLEN--GEYMISSS-YDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFG--HVFRIT 518 (938)
Q Consensus 444 ~~i~~~id~~~~~~--~~~~I~~~-~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~g--y~i~v~ 518 (938)
..++.+.... .+..++.. ..++|+.+++.++++.+.+++.++++++.++ .+++.|+.++| |+|+|+
T Consensus 471 ----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i~-----~~~~~~~~~~g~~y~iev~ 541 (918)
T 3thx_B 471 ----KILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILK-----NPSAQYVTVSGQEFMIEIK 541 (918)
T ss_dssp ----TTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CTTCCCEEETTEEEEEEEE
T ss_pred ----HHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----cccceeEeecCCEEEEEEc
Confidence 2333222111 12233332 3578888888888888888888877766554 34677888888 999999
Q ss_pred cCcccccccccCccEEEEEEecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 002306 519 KKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDV 598 (938)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~ 598 (938)
+.....+| .. |+.+|++++++||+|++++++++++..+++++...+.+++.++...+.++.+.|+.+++++|+|||
T Consensus 542 ~~~~~~vp--~~--~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~ 617 (918)
T 3thx_B 542 NSAVSCIP--TD--WVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDC 617 (918)
T ss_dssp TTSGGGSC--SS--CEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCC--Ce--EEEEEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777 34 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeecc--CcccccCCccccCCCCeEEEEEecCCCCchhhhhhh
Q 002306 599 LLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQD--WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQV 676 (938)
Q Consensus 599 l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~--~~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i 676 (938)
++|||.+|.. .+||||++++++ .+.|++||||+++... +..+||||++|++++|++++||||||||||||||++
T Consensus 618 l~s~A~~a~~--~~~~~P~~~~~~--~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i 693 (918)
T 3thx_B 618 IFSLAKVAKQ--GDYCRPTVQEER--KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQV 693 (918)
T ss_dssp HHHHHHHHTS--SSCBCCEEESSC--EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCcCCcccCCC--cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHH
Confidence 9999999986 789999998753 6999999999998532 357999999999999999999999999999999999
Q ss_pred hhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 677 GVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 677 ~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
+++.+++|+|+++|+..+.+++++++|+++|+.|++..+.|+||+||++++.|++.+++|+||||||||+||||.++.++
T Consensus 694 ~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i 773 (918)
T 3thx_B 694 ALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAI 773 (918)
T ss_dssp HHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccc-eeEEEEEEEEEcc------------CCceeeeeeec
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVG-VANYHVSAHIDST------------SRKLTMLYKVE 823 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~------------~~~~~~~ykl~ 823 (938)
++++++++.++.|+++||+|||+++++++++ ++. |.|+||.+.++++ +++++|+|||.
T Consensus 774 ~~~il~~L~~~~g~tvl~vTH~~el~~l~~~---------~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~ 844 (918)
T 3thx_B 774 AYATLEYFIRDVKSLTLFVTHYPPVCELEKN---------YSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQIT 844 (918)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGGGGGHHHH---------TTTTEEEEEEEEECC-----------------CCEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh---------cccceEEEEEEEEEcccccccccccccCCCCceeEeeeec
Confidence 9999999976469999999999999999998 775 9999999865422 35799999999
Q ss_pred CCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 002306 824 PGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 859 (938)
Q Consensus 824 ~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~~ 859 (938)
+|+|++||||+||++||+|++||+||++++++||+.
T Consensus 845 ~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~ 880 (918)
T 3thx_B 845 RGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGL 880 (918)
T ss_dssp ESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999975
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=5.1e-136 Score=1241.05 Aligned_cols=743 Identities=31% Similarity=0.433 Sum_probs=654.6
Q ss_pred hccccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCCCCCccccccCHhHHHHHHHHHHh
Q 002306 16 KQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLLL 94 (938)
Q Consensus 16 ~~~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~~~~~pm~gvp~~~~~~yl~~Lv~ 94 (938)
.+.||||+|||+||++ |||||||||||||||||+||+++|++|+++ ||.+.+...++||||||+|+++.|+++||
T Consensus 11 ~~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~---lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv- 86 (765)
T 1ewq_A 11 GPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLV---LTHKTSKDFTTPMAGIPLRAFEAYAERLL- 86 (765)
T ss_dssp SCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCC---CEEEECSSCEEEEEEEEGGGHHHHHHHHH-
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCceeEEcHHHHHHHHHHhCcE---EeccCCCCCCCceecCcHHHHHHHHHHHH-
Confidence 4689999999999999 999999999999999999999999999999 55552234689999999999999999998
Q ss_pred hcCCeEEEEEeccC--------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccccCCceEEEEEEecCCce
Q 002306 95 ERTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRV 166 (938)
Q Consensus 95 ~~G~~kVaI~eQ~e--------~~R~v~riiTPGt~~~~ed~l~~~~~~~~~nyL~aI~~~~~~~~~~iGla~~D~stG~ 166 (938)
++| ||||||||+| ++|+|+||+||||++ |+.++ ..++|||+||. . ...+|+||+|+|||+
T Consensus 87 ~~G-~kVai~eQ~e~~~~~kg~v~R~v~~v~TpGT~~--~~~~l----~~~~n~l~ai~-~----~~~~Gla~~D~stg~ 154 (765)
T 1ewq_A 87 KMG-FRLAVADQVEPAEEAEGLVRREVTQLLTPGTLL--QESLL----PREANYLAAIA-T----GDGWGLAFLDVSTGE 154 (765)
T ss_dssp HTT-CCEEEEEECSCGGGCSSSCCEEEEEEECGGGCC--CGGGS----CSSCCCEEEEE-E----SSSEEEEEEETTTTE
T ss_pred HCC-CEEEEEecCCCcccccCceeEEEEEEEcCceec--chhhc----CCCCcEEEEEE-e----CCEEEEEEEECCCCE
Confidence 999 9999999998 599999999999985 55554 25799999998 2 247999999999999
Q ss_pred EEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhhcCceeeecccccccchhHHHHHHHhhcCCCCC
Q 002306 167 LGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSVEP 246 (938)
Q Consensus 167 ~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~l~~~~~~~~~~ 246 (938)
|++++|.|+ ++|.++|.+++|+|||++++. ..+... ++..+.| |+. +.+.++|+..
T Consensus 155 ~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~------~~~~~~-------~~~~~~~-f~~----~~l~~~~~~~--- 210 (765)
T 1ewq_A 155 FKGTVLKSK---SALYDELFRHRPAEVLLAPEL------LENGAF-------LDEFRKR-FPV----MLSEAPFEPE--- 210 (765)
T ss_dssp EEEEEESSH---HHHHHHHHHHCCSEEEECHHH------HHCHHH-------HHHHHHH-CCS----EEECCCCCCC---
T ss_pred EEEEEecCH---HHHHHHHHhcCCeEEEecCCh------HHHHHH-------hhhcccc-cCH----HHHHHHhccc---
Confidence 999999874 679999999999999998531 111111 1223334 543 1222333311
Q ss_pred CccccCCcchHHHHHHHHHHHHHHhcccCCCCcceeEEeccCCeEEecHHHHHHcccccccCCCCccccHHHHhhhhccC
Q 002306 247 VRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTA 326 (938)
Q Consensus 247 ~~~~~~~~~~a~~AlgaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~T 326 (938)
++.+ +.+++|+|+|++|++.++..... ...+..+..+++|.||.+|++||||+++.++ +||||+++|+ |+|
T Consensus 211 ---~~~~-~~~~~a~g~ll~Yl~~~~~~~~~-~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~---~gsL~~~ld~-t~T 281 (765)
T 1ewq_A 211 ---GEGP-LALRRARGALLAYAQRTQGGALS-LQPFRFYDPGAFMRLPEATLRALEVFEPLRG---QDTLFSVLDE-TRT 281 (765)
T ss_dssp ---SSSC-HHHHHHHHHHHHHHHHHHTSCCC-CCCCEECCGGGSCBCCHHHHHHTTSSSCSSS---CCCHHHHHCC-CSS
T ss_pred ---ccCC-HHHHHHHHHHHHHHHHhhhcccc-cCCcEEECCCCeEEecHHHHHhCcCccCCCc---cchHHHHhCC-CCC
Confidence 2334 67899999999999999865555 6678888999999999999999999998763 6899999999 999
Q ss_pred chHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhChHHHHHHHHHhccCCcHHHHHHHHHhccCCHHHHHHHHHHHHhHHH
Q 002306 327 GMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPY 406 (938)
Q Consensus 327 ~~GkRlLr~WL~~PL~d~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~ 406 (938)
+||+|+||+||++|++|.++|++|||+|++|.++..++..++..|++++|++|++.|+..++++++|+..+++++..++.
T Consensus 282 ~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~~~ 361 (765)
T 1ewq_A 282 APGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILPE 361 (765)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhhhcchhhhhhHhhHhhhhhccCCchHHHHHHHHHhhcCCccc--ccCcccccCCCChhHHHHHHHHHHHHHHH
Q 002306 407 IRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQL--ENGEYMISSSYDTGLSALKNEQESLERQI 484 (938)
Q Consensus 407 i~~~L~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~l~~~i~~~id~~~~--~~~~~~I~~~~d~~Ld~lr~~~~~~~~~l 484 (938)
+.+.+. +.+.+ +.+.++.+.|++++|.+++ ..+++.|++|||++||++|+.+++.+++|
T Consensus 362 l~~~l~-----------------l~~~l--~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l 422 (765)
T 1ewq_A 362 LRALLG-----------------EEVGL--PDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYF 422 (765)
T ss_dssp HHHHHC-----------------TTSCC--CCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------HHhcc--ccHHHHHHHHHHHhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 876653 11122 5577888999999998764 23468899999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccccccccCccEEEEEEecCeEEEEChhHHHHHHHHHHHHHHH
Q 002306 485 HSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEY 564 (938)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~ 564 (938)
.++.++++++++++ .+++.|++++||+|+|+++....+| .+ |+..++.++..||+|++++++++++.++++++
T Consensus 423 ~~~~~~~~~~~~~~---~l~i~~~~~~gy~i~v~~~~~~~vp--~~--~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~ 495 (765)
T 1ewq_A 423 LELEERERERTGIP---TLKVGYNAVFGYYLEVTRPYYERVP--KE--YRPVQTLKDRQRYTLPEMKEKEREVYRLEALI 495 (765)
T ss_dssp HHHHHHHHHHHCCT---TCEEEEETTTEEEEEEEGGGGGGSC--TT--CEEEEECSSEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---ceEEEeccceeEEEEeehHhhhcCC--cc--eEEEEeccCCcEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999876 8999999999999999988777776 34 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCCCccEEEEccccceEeeccCccc
Q 002306 565 KNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNF 644 (938)
Q Consensus 565 ~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~~~~~~~~~ 644 (938)
..++.+++.+|.+.+..+.+.|+.+.+++|+|||++|+|.+|.. .+||||++ + +.+.++++|||+++. +..+
T Consensus 496 ~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~--~~~~~P~~-~---~~i~i~~~rHP~le~--~~~~ 567 (765)
T 1ewq_A 496 RRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVR--YGYVRPRF-G---DRLQIRAGRHPVVER--RTEF 567 (765)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCBCCEE-S---SSEEEEEECCTTGGG--TSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--CCceeecc-C---CcEEEEEeECceEcc--CCce
Confidence 99999999999999999999999999999999999999999986 68999999 2 359999999999985 4579
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHH
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEML 724 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~ 724 (938)
|+||++|+ |++++||||||||||||||+++++.+++|.|+++|+..+.+++++++|+++++.|++..+.|+|+.+|.
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~ 644 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEME 644 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHH
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHH
Confidence 99999997 899999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEE
Q 002306 725 ETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYH 804 (938)
Q Consensus 725 ~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~ 804 (938)
+++.++..+++|+|+||||||+||++.|+.++++++++++.+ .|+++||+||++++..++ . +++.|+|
T Consensus 645 ~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~~-~----------~~v~n~~ 712 (765)
T 1ewq_A 645 EVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALG-L----------PRLKNLH 712 (765)
T ss_dssp HHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTCC-C----------TTEEEEE
T ss_pred HHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhh-h----------hcceEEE
Confidence 999999999999999999999999999999998999999987 699999999999998765 3 7899999
Q ss_pred EEEEEEccCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 002306 805 VSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858 (938)
Q Consensus 805 ~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le~ 858 (938)
|.+... +++++|+||+.+|+|++|||++||++||+|++||+||++++++||+
T Consensus 713 ~~~~~~--~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le~ 764 (765)
T 1ewq_A 713 VAAREE--AGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAA 764 (765)
T ss_dssp EEEECC--SSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred EEEEEc--CCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 998765 6789999999999999999999999999999999999999999985
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=2.1e-135 Score=1270.75 Aligned_cols=810 Identities=23% Similarity=0.331 Sum_probs=641.9
Q ss_pred hhhccccHHHHHhcCCCC-CCeEEEEecCCeeeehhhhHHHHHHHhhhhhccccccCCCCCCccccccCHhHHHHHHHHH
Q 002306 14 DAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDL 92 (938)
Q Consensus 14 ~~~~~~~~~~qy~~ik~~-~d~ilffr~GdFYe~f~~DA~~~a~~l~~~~~~l~~~~~~~~~~pm~gvp~~~~~~yl~~L 92 (938)
..++.||||+|||+||++ |||||||||||||||||+||+++|++|+++ |+. + ++||||||+|+++.|+++|
T Consensus 64 ~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYElf~~DA~~~a~~L~i~---lt~-~----~~pmaGvP~ha~~~yl~~L 135 (1022)
T 2o8b_B 64 FLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLV---FMK-G----NWAHSGFPEIAFGRYSDSL 135 (1022)
T ss_dssp HHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHCCC---CCS-S----SSCEEEEEGGGHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEEehhhHHHHHHhcCeE---Eec-C----CCCCCCCchhHHHHHHHHH
Confidence 344689999999999999 999999999999999999999999999998 543 2 4999999999999999999
Q ss_pred HhhcCCeEEEEEeccC---------------------CcceeEEecCCCCccccccccccCCCCCCCcEEEEEeeccc--
Q 002306 93 LLERTDHTLELYEGSG---------------------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFR-- 149 (938)
Q Consensus 93 v~~~G~~kVaI~eQ~e---------------------~~R~v~riiTPGt~~~~ed~l~~~~~~~~~nyL~aI~~~~~-- 149 (938)
| ++| ||||||||+| ++|+|+||+||||++ ++.+....+..++|||+||.+...
T Consensus 136 v-~~G-ykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~rvvTpGT~~--d~~~~~~l~~~~~n~l~ai~~~~~~~ 211 (1022)
T 2o8b_B 136 V-QKG-YKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQT--YSVLEGDPSENYSKYLLSLKEKEEDS 211 (1022)
T ss_dssp H-HTT-CCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEEEECTTSCC--CCTTSCCCSCSSCCEEEEEEEEECSC
T ss_pred H-HCC-CeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEEEECCCeee--cccccccccCCCCcEEEEEEEccccc
Confidence 8 999 9999999986 389999999999985 454310014578999999986321
Q ss_pred -cCCceEEEEEEecCCceEEEEEecCchhHHHHHHHHHccCcceEEecCCCcCChhhHHHHHHhhh-cCceeee--cccc
Q 002306 150 -ENGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR-CGVMLTE--RKKT 225 (938)
Q Consensus 150 -~~~~~iGla~~D~stG~~~v~ef~D~~~~~~L~t~L~~~~P~EIli~~~~~~~~~~~~l~~~l~~-~~~~i~~--~~~~ 225 (938)
+....||+||+|+|||+|++++|.|+..+++|.++|.+++|+|||++++.. +.. ..+++.. ....+.. .+..
T Consensus 212 ~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~Eil~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~ 287 (1022)
T 2o8b_B 212 SGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNL-SKE---TKTILKSSLSCSLQEGLIPGS 287 (1022)
T ss_dssp C-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEEEEEEETTTC-CHH---HHHHHTTTTTTSEEEEECBTT
T ss_pred cCCCcEEEEEEEECCCCEEEEEEecCchHHHHHHHHHHhcCCcEEEecCCcc-chH---HHHHHHhhhhhhhhhhcccch
Confidence 122479999999999999999999888889999999999999999997522 122 2222221 1111222 1344
Q ss_pred cccc-hhHHHHHH--HhhcCCC-----------------CCCcccc---CCcchHHHHHHHHHHHHHHhcc------cCC
Q 002306 226 EFKT-RDLVQDLD--RLVRGSV-----------------EPVRDLV---SGFEIAPGALGALLSYAELLSD------ESN 276 (938)
Q Consensus 226 ~F~~-~~~~~~l~--~~~~~~~-----------------~~~~~~~---~~~~~a~~AlgaLL~YL~~~~~------~~~ 276 (938)
.|+. ....+.+. .+|.... ...+++. .+.+++++|+|+||+||+.++. ...
T Consensus 288 ~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~ 367 (1022)
T 2o8b_B 288 QFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMAN 367 (1022)
T ss_dssp TBCCHHHHHHHHHHTTTTSSSSCCCC-CCCCHHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCC
T ss_pred hhcchhhHHhhhhhhhhcccccccccchhhHHHHHHhhcchhhcccccccccHHHHHHHHHHHHHHHHhCcchhhhcccc
Confidence 4543 22222221 2333110 1223332 2356789999999999998752 111
Q ss_pred CCcce-------------eEEeccCCeEEecHHHHHHcccccccCCCCccccHHHHhhhhccCchHHHHHHHHhhCcCCC
Q 002306 277 YGNYY-------------IRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLD 343 (938)
Q Consensus 277 ~~~~~-------------i~~~~~~~~M~LD~~Tl~~LEI~~~~~~~~~~gSLf~lLn~~t~T~~GkRlLr~WL~~PL~d 343 (938)
+..+. ..++..+++|.||++|++||||++|.++++++||||++||| |+||||+||||+||++||+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD~~T~~nLEl~~~~~~g~~~gSLl~~Ld~-t~T~mG~RLLr~WL~~PL~d 446 (1022)
T 2o8b_B 368 FEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDT-CHTPFGKRLLKQWLCAPLCN 446 (1022)
T ss_dssp EEECCCGGGGTCC---------CCCCBCBCCHHHHHHTTCSSCCSSSSCCCSHHHHHCC-CSSHHHHHHHHHHHHSCBCC
T ss_pred ccccccccccccccccccccccCCCCeEEeCHHHHHhhcCCccCCCCCCCCcHHHHhCc-CCCchhHHHHHHHHhCccCC
Confidence 11111 11256789999999999999999998888888999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHhccCCcHHHHHHHHHh-ccC-------------------CH---HHHHHHHHH
Q 002306 344 VNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEK-RRA-------------------GL---QQIVKLYQS 400 (938)
Q Consensus 344 ~~~I~~R~daVe~l~~~~~l~~~lr~~Lk~i~DleRll~ri~~-~~~-------------------~~---~dl~~l~~~ 400 (938)
+++|++|||+|++|+++..+++.+++.|+++||+||+++|++. +++ ++ +|++.+..+
T Consensus 447 ~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~ 526 (1022)
T 2o8b_B 447 HYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEG 526 (1022)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHhcCccHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 431 23 455555555
Q ss_pred HHhHHHHHHHHhhhhcchhhhhhHhhHhhhhhcc------CCchHHHHHHHHHhhcCCcccccCcc-cccCCCChhHHHH
Q 002306 401 SIRLPYIRSALQQYEGQFSSLIKERYLDPLESLT------DDDHLNKFIALVETSVDLDQLENGEY-MISSSYDTGLSAL 473 (938)
Q Consensus 401 l~~l~~i~~~L~~~~~~~~~~l~~~~~~~l~~~~------~~~~l~~l~~~i~~~id~~~~~~~~~-~I~~~~d~~Ld~l 473 (938)
+..++.+...+......... ..+..+.... ..+.+.++...|+++||.+.+.+++. .+++|||++||++
T Consensus 527 l~~~~~i~~~l~~~~~~~~s----~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~ 602 (1022)
T 2o8b_B 527 FKVMCKIIGIMEEVADGFKS----KILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQA 602 (1022)
T ss_dssp HHHHHHHHHHHHHHHTTCCC----HHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCc----HHHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHH
Confidence 67777777777542111111 1222222110 11566777778889999875544343 4599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeecceeeEEEEEecCcccc-cccccCccEEEEEEecCeEEEEChhHHH
Q 002306 474 KNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPK-IRKKLTTQFIVLETRKDGVKFTNTKLKK 552 (938)
Q Consensus 474 r~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~gy~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~l~~ 552 (938)
|+.+.+.+++|.++++++++.++++ ++++...+..+|+|+|++..... +| .. |+..+++++..||+|+++++
T Consensus 603 r~~~~~~~~~l~~~~~~~~~~~~~~---~l~~~~~~~~~y~i~v~~~~~~~~vp--~~--~~~~~t~~~~~rf~t~el~~ 675 (1022)
T 2o8b_B 603 LADIRENEQSLLEYLEKQRNRIGCR---TIVYWGIGRNRYQLEIPENFTTRNLP--EE--YELKSTKKGCKRYWTKTIEK 675 (1022)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGSSCS---CCEEECCGGGCCEEEECTTTTSSCCC--C---CEEEEETTEEEECCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---ceeEEEecCceEEEEEehhhhcccCC--Cc--eEEeeeccCccEEechHHHH
Confidence 9999999999999999999999886 56654444456999998876554 55 34 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCC--CCccEEEEc
Q 002306 553 LGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPP--DVGDIILEG 630 (938)
Q Consensus 553 l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~s~A~~a~~~~~~~~rP~~~~~--~~~~l~i~~ 630 (938)
++.++..+++++...+.+++.++.+.+.++.+.|..+++++|+|||++|||.+|.....+||||++++. +.+.|.+++
T Consensus 676 ~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~~~~~~~l~i~~ 755 (1022)
T 2o8b_B 676 KLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKG 755 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCEECCTTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCccCCccccCCCCCceEEEEe
Confidence 999999999999999999999999999999999999999999999999999999843478999999832 234699999
Q ss_pred cccceEeecc-CcccccCCccccCCC-------CeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHH
Q 002306 631 SRHPCVEAQD-WVNFIPNDCKLIRGK-------SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCI 702 (938)
Q Consensus 631 ~rhp~~~~~~-~~~~v~n~~~l~~~~-------~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i 702 (938)
||||+++... +..+|+||++|+... |++++||||||||||||||++|++.+++|+|+|||+..+.++++|+|
T Consensus 756 ~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I 835 (1022)
T 2o8b_B 756 SRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRV 835 (1022)
T ss_dssp ECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBE
T ss_pred ccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHH
Confidence 9999998643 457999999998776 89999999999999999999999999999999999999999999999
Q ss_pred HHhcCCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH
Q 002306 703 FARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (938)
Q Consensus 703 ~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~ 782 (938)
++++|+.|++..+.|+|++||.+++.|++.+++|+||||||||+|||+.+|.++++++++++.++.|+++||+|||++++
T Consensus 836 ~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~ 915 (1022)
T 2o8b_B 836 FTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV 915 (1022)
T ss_dssp EEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHH
T ss_pred HHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999874499999999999998
Q ss_pred HHhhhcccccccccccceeEEEEEEEEEc-----cCCceeeeeeecCCCCCCCchHHHHHHcCCCHHHHHHHHHHHHHhh
Q 002306 783 ALAHENANEFNTKQMVGVANYHVSAHIDS-----TSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELE 857 (938)
Q Consensus 783 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~ykl~~G~~~~S~gi~vA~~ag~P~~vi~rA~~~~~~le 857 (938)
..... .+.+.++||.+..+. +.+.++|+|++.+|+|++|||++||++||+|++||+||++++++||
T Consensus 916 ~~~~d---------~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le 986 (1022)
T 2o8b_B 916 EDYSQ---------NVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFE 986 (1022)
T ss_dssp HHTSS---------CSSEEEEEEEEC-------------CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHhCC---------cceeecCeEEEEEecCcccCCCCceEEEeeecCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 76554 577889999864321 1467999999999999999999999999999999999999999999
Q ss_pred ccC
Q 002306 858 DFT 860 (938)
Q Consensus 858 ~~~ 860 (938)
+..
T Consensus 987 ~~~ 989 (1022)
T 2o8b_B 987 KMN 989 (1022)
T ss_dssp SST
T ss_pred HHH
Confidence 764
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.81 E-value=4.8e-20 Score=194.89 Aligned_cols=154 Identities=15% Similarity=0.120 Sum_probs=112.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhcccccccccc---cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~---~~ 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-. .+.-.|||+... .+
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 467799999999999999999999999999998754210 111234444321 11
Q ss_pred hH------------------------HHHHHHhcCCchhh-hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002306 697 SV------------------------RDCIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (938)
Q Consensus 697 ~~------------------------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~ 750 (938)
++ +..++..+|..+.. ....+++|++++|...+++ .+.+|+++||||||+|+|+
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 11 22455666766543 6667888888777666555 4899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.....+ ..++..+.++.|.++|++||+++++.+|++ ...+.++++..
T Consensus 179 ~~~~~i-~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~---------i~~l~~G~i~~ 225 (235)
T 3tif_A 179 KTGEKI-MQLLKKLNEEDGKTVVVVTHDINVARFGER---------IIYLKDGEVER 225 (235)
T ss_dssp HHHHHH-HHHHHHHHHHHCCEEEEECSCHHHHTTSSE---------EEEEETTEEEE
T ss_pred HHHHHH-HHHHHHHHHHcCCEEEEEcCCHHHHHhCCE---------EEEEECCEEEE
Confidence 998888 777777765358999999999988777776 55555555543
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.80 E-value=1e-19 Score=190.95 Aligned_cols=142 Identities=21% Similarity=0.216 Sum_probs=108.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh------------------------h-hhcccccccccc---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------------------------M-AQVGSFVPCDRA--- 694 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~------------------------l-aq~g~~vp~~~~--- 694 (938)
..+.++++|++.+|++++|+||||||||||||+++++.. . .++ .|+|+...
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i-~~v~q~~~l~~ 95 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL-GFVFQFHYLIP 95 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE-EEECSSCCCCT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE-EEEecCcccCC
Confidence 346679999999999999999999999999999875421 0 112 34554321
Q ss_pred cch---------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002306 695 SIS---------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 695 ~~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~ 752 (938)
.++ .++.++..+|..+......+++|++++|...++++ +.+|+++||||||+|+|+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 111 12345677787777777788899888777666554 78999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+ ..++..+.++ |.++|++||+.++..+|++
T Consensus 176 ~~~~-~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~ 208 (224)
T 2pcj_A 176 TKRV-MDIFLKINEG-GTSIVMVTHERELAELTHR 208 (224)
T ss_dssp HHHH-HHHHHHHHHT-TCEEEEECSCHHHHTTSSE
T ss_pred HHHH-HHHHHHHHHC-CCEEEEEcCCHHHHHhCCE
Confidence 8888 7777778764 8999999999887666666
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.80 E-value=1.1e-19 Score=195.36 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=109.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhcccccccccc---c----
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRA---S---- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~---~---- 695 (938)
..+.++++|++.+|++++|+||||||||||+|+++++.- .++...++|+... .
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVS 103 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHH
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHH
Confidence 456779999999999999999999999999999976421 1111223433221 0
Q ss_pred ---------------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CC------CCcEEEEeCCCCCCChhhH
Q 002306 696 ---------------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-AT------DRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 696 ---------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~------~~slvllDEp~~gtd~~~~ 753 (938)
...++.++.++|..+......+++|++++|...++++ +. +|+++||||||+|+|+...
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~ 183 (266)
T 4g1u_C 104 EVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183 (266)
T ss_dssp HHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHH
T ss_pred HHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHH
Confidence 1124456778888777777888899888887666665 55 9999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
..+ ..++..+.++.++++|++||+.+++ .+|++
T Consensus 184 ~~i-~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~ 217 (266)
T 4g1u_C 184 QHT-LRLLRQLTRQEPLAVCCVLHDLNLAALYADR 217 (266)
T ss_dssp HHH-HHHHHHHHHHSSEEEEEECSCHHHHHHHCSE
T ss_pred HHH-HHHHHHHHHcCCCEEEEEEcCHHHHHHhCCE
Confidence 888 7777777664568999999998776 47877
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.79 E-value=2e-19 Score=199.89 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=117.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh------------------------hhhcccccccccc---cc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL------------------------MAQVGSFVPCDRA---SI 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~------------------------laq~g~~vp~~~~---~~ 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++.. ..++ .|||+... .+
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~I-g~v~Q~~~l~~~~ 120 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI-GMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTE-EEECSSCCCCTTS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcE-EEEeCCCccCCCC
Confidence 57789999999999999999999999999999976421 0122 34554331 11
Q ss_pred h---------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q 002306 697 S---------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 697 ~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~ 754 (938)
+ .++.++..+|+.+......+.+|++++|...|+++ +.+|+++|+||||+|||+....
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 1 13456778888888888889999888887776665 7899999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEE
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVS 806 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~ 806 (938)
.+ ..+++.+.++.|.++|++||+++.+ .+|++ ...+.++++.
T Consensus 201 ~i-~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDr---------v~vl~~G~iv 243 (366)
T 3tui_C 201 SI-LELLKDINRRLGLTILLITHEMDVVKRICDC---------VAVISNGELI 243 (366)
T ss_dssp HH-HHHHHHHHHHSCCEEEEEESCHHHHHHHCSE---------EEEEETTEEE
T ss_pred HH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCE---------EEEEECCEEE
Confidence 88 7788888765699999999998776 57887 5555555543
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.79 E-value=1.6e-19 Score=194.88 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=108.8
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh----------------------hhhcccccccccc----cch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL----------------------MAQVGSFVPCDRA----SIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~----------------------laq~g~~vp~~~~----~~~ 697 (938)
.+.++++|++.+|++++|+||||||||||+|+++++.. ..+.-.|||+... ..+
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 47779999999999999999999999999999875421 0111235554321 111
Q ss_pred H---------------------HHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 V---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~ 755 (938)
+ ++.++.++|+.+......+++|++++|...++++ +.+|+++||||||+|+|+.....
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~ 181 (275)
T 3gfo_A 102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181 (275)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 1 3356677888877778888999888777666554 89999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+ +.++..+.++.|.++|++||+++++ .+|++
T Consensus 182 i-~~~l~~l~~~~g~tvi~vtHdl~~~~~~~dr 213 (275)
T 3gfo_A 182 I-MKLLVEMQKELGITIIIATHDIDIVPLYCDN 213 (275)
T ss_dssp H-HHHHHHHHHHHCCEEEEEESCCSSGGGGCSE
T ss_pred H-HHHHHHHHhhCCCEEEEEecCHHHHHHhCCE
Confidence 8 7778877622489999999998765 46776
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=4.4e-19 Score=189.60 Aligned_cols=142 Identities=19% Similarity=0.204 Sum_probs=107.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhcccccccccc---cch--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRA---SIS-- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~---~~~-- 697 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .|+|+... .++
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i-~~v~q~~~l~~~ltv~ 106 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI-SYLPEEAGAYRNMQGI 106 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE-EEECTTCCCCTTSBHH
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE-EEEcCCCCCCCCCcHH
Confidence 3567799999999999999999999999999999765210 112 24554321 111
Q ss_pred -------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 698 -------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 698 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
.++.++..+|+.+......+++|++++|...+++ .+.+|+++||||||+|+|+.....+
T Consensus 107 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l- 185 (256)
T 1vpl_A 107 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV- 185 (256)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH-
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHH-
Confidence 1234566778877777788889988877666555 4899999999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHHH-Hhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELTA-LAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~~-~~~~ 787 (938)
+.++..+.+ .|.++|++||+.+... +|++
T Consensus 186 ~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~ 215 (256)
T 1vpl_A 186 RKILKQASQ-EGLTILVSSHNMLEVEFLCDR 215 (256)
T ss_dssp HHHHHHHHH-TTCEEEEEECCHHHHTTTCSE
T ss_pred HHHHHHHHh-CCCEEEEEcCCHHHHHHHCCE
Confidence 777777776 5899999999987764 5665
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.78 E-value=5.2e-19 Score=196.52 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=115.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------------------hccccccccccc---ch
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------QVGSFVPCDRAS---IS 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------------------q~g~~vp~~~~~---~~ 697 (938)
..+.++++|++.+|++++|+||||||||||||+|+++.-.. ..-.||++..+- ++
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~lt 96 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT 96 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCC
Confidence 45667999999999999999999999999999998653110 011234433211 11
Q ss_pred ---------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q 002306 698 ---------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 698 ---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~ 755 (938)
.++.++..+|+.+...+..+.+|++++|...+.++ +.+|+++|||||++|+|+.....
T Consensus 97 V~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 97 VYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp HHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 23456777888888888889999888777666654 89999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
+...+.+.+.+ .|.++|++|||.+.+ .++++ ...+.++++...
T Consensus 177 l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDr---------i~vl~~G~i~~~ 220 (359)
T 3fvq_A 177 IREDMIAALRA-NGKSAVFVSHDREEALQYADR---------IAVMKQGRILQT 220 (359)
T ss_dssp HHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSE---------EEEEETTEEEEE
T ss_pred HHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCE---------EEEEECCEEEEE
Confidence 84344444444 799999999998665 68887 555666666543
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.78 E-value=7.6e-19 Score=188.37 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=107.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------hhcccccccccc---cch
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------AQVGSFVPCDRA---SIS 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------aq~g~~vp~~~~---~~~ 697 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|||+... .++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 116 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMT 116 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCC
Confidence 3567799999999999999999999999999998754210 011124554321 111
Q ss_pred ----------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 698 ----------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 698 ----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.++.++.++|+.+......+++|++++|...+++ .+.+|+++||||||+|+|+....
T Consensus 117 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (263)
T 2olj_A 117 VLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196 (263)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 1234566777777777778889888877666555 48999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ +.++..+.+ .|.++|++||+.+.+ .+|++
T Consensus 197 ~~-~~~l~~l~~-~g~tvi~vtHd~~~~~~~~d~ 228 (263)
T 2olj_A 197 EV-LSVMKQLAN-EGMTMVVVTHEMGFAREVGDR 228 (263)
T ss_dssp HH-HHHHHHHHH-TTCEEEEECSCHHHHHHHCSE
T ss_pred HH-HHHHHHHHh-CCCEEEEEcCCHHHHHHhCCE
Confidence 88 777787876 489999999998765 47776
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.78 E-value=6.6e-19 Score=189.17 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=107.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------------------hhccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------------------AQVGSFV 689 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------------------aq~g~~v 689 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .++ .||
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~v 98 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL-TMV 98 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE-EEE
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcce-EEE
Confidence 456699999999999999999999999999998754210 012 244
Q ss_pred ccccc---cch----------------------HHHHHHHhcCCchh-hhhcccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002306 690 PCDRA---SIS----------------------VRDCIFARVGAGDC-QLRGVSTFMQEMLETASILKG-ATDRSLIIID 742 (938)
Q Consensus 690 p~~~~---~~~----------------------~~d~i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-a~~~slvllD 742 (938)
|+... .++ .++.++.++|+.+. .....+++|++++|...++++ +.+|+++|||
T Consensus 99 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 178 (262)
T 1b0u_A 99 FQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD 178 (262)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred ecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44321 001 12346677888777 777888899888777665554 7899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|||+|+|+.....+ +.++..+.+ .|.++|++||+.+.+ .+|++
T Consensus 179 EPts~LD~~~~~~~-~~~l~~l~~-~g~tvi~vtHd~~~~~~~~d~ 222 (262)
T 1b0u_A 179 EPTSALDPELVGEV-LRIMQQLAE-EGKTMVVVTHEMGFARHVSSH 222 (262)
T ss_dssp STTTTSCHHHHHHH-HHHHHHHHH-TTCCEEEECSCHHHHHHHCSE
T ss_pred CCCccCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 99999999988888 777777876 489999999998766 47776
No 15
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.77 E-value=8e-19 Score=187.44 Aligned_cols=144 Identities=19% Similarity=0.121 Sum_probs=107.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------hhcccccccccc---c-----------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------AQVGSFVPCDRA---S----------------- 695 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------aq~g~~vp~~~~---~----------------- 695 (938)
..+.++++|++.+|++++|+||||||||||||+++++.-. .+.-.|+|+... .
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 97 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINT 97 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCT
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhccc
Confidence 3566799999999999999999999999999999865321 111123433210 0
Q ss_pred --------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q 002306 696 --------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766 (938)
Q Consensus 696 --------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~ 766 (938)
...++.++..+|..+...+..+++|++++|...+++ .+.+|+++|||||++|+|+.....+ ..++..+.+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l-~~~l~~l~~ 176 (253)
T 2nq2_C 98 FAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV-LSLLIDLAQ 176 (253)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHH-HHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHH
Confidence 012345677788877777778889988877666555 4789999999999999999988888 677777766
Q ss_pred cCCCeEEEEeCChHHH-HHhhh
Q 002306 767 EIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 767 ~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.|.++|++||+.+.. .+|++
T Consensus 177 ~~g~tvi~vtHd~~~~~~~~d~ 198 (253)
T 2nq2_C 177 SQNMTVVFTTHQPNQVVAIANK 198 (253)
T ss_dssp TSCCEEEEEESCHHHHHHHCSE
T ss_pred hcCCEEEEEecCHHHHHHhCCE
Confidence 3489999999998776 57776
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.77 E-value=9e-19 Score=185.79 Aligned_cols=143 Identities=14% Similarity=0.084 Sum_probs=104.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------------hhcccccccccc---cch-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------------AQVGSFVPCDRA---SIS- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------------aq~g~~vp~~~~---~~~- 697 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... .++
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 98 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence 3466799999999999999999999999999999764210 111224444321 111
Q ss_pred -------------------HHHHHHHhc-CCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 698 -------------------VRDCIFARV-GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 698 -------------------~~d~i~~~~-~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
.++.++.++ |..+......+++|++++|...+++ .+.+|+++||||||+|+|+.....+
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l 178 (240)
T 1ji0_A 99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178 (240)
T ss_dssp HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 123455555 3655556667788877777655555 4899999999999999999988888
Q ss_pred HHHHHHHHHhcCCCeEEEEeCChHH-HHHhhh
Q 002306 757 AWAICEHLVEEIRAPTLFATHFHEL-TALAHE 787 (938)
Q Consensus 757 ~~~il~~l~~~~~~~~l~~TH~~el-~~~~~~ 787 (938)
+.++..+.+ .|.++|++||+.+. ..+|++
T Consensus 179 -~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~ 208 (240)
T 1ji0_A 179 -FEVIQKINQ-EGTTILLVEQNALGALKVAHY 208 (240)
T ss_dssp -HHHHHHHHH-TTCCEEEEESCHHHHHHHCSE
T ss_pred -HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE
Confidence 777777776 58999999999855 467877
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.77 E-value=9.1e-19 Score=195.86 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=110.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-------------------hccccccccccc---ch---
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------QVGSFVPCDRAS---IS--- 697 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-------------------q~g~~vp~~~~~---~~--- 697 (938)
..+.++++|++.+|++++|+||||||||||||+|+++.-.. .+ .||+++.+- ++
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~i-g~VfQ~~~l~p~ltV~e 94 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV-GMVFQSYALYPHLSVAE 94 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCE-EEECTTCCCCTTSCHHH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCE-EEEecCCcCCCCCCHHH
Confidence 35667999999999999999999999999999998753110 11 234433211 11
Q ss_pred ------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 698 ------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 698 ------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
.++.++..+|+.+...+..+.+|++++|...|.++ +.+|+++|||||++|||+.....+ .
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l-~ 173 (381)
T 3rlf_A 95 NMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-R 173 (381)
T ss_dssp HHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH-H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-H
Confidence 13456778888888888889999888887666655 789999999999999999998888 6
Q ss_pred HHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 759 AICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
..+..+.++.|.++|++|||.+.+ .++++
T Consensus 174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDr 203 (381)
T 3rlf_A 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADK 203 (381)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCE
Confidence 777777654699999999997655 68887
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.77 E-value=1.2e-18 Score=186.81 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=106.6
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh----------------------hhhcccccccccc---cc-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL----------------------MAQVGSFVPCDRA---SI- 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~----------------------laq~g~~vp~~~~---~~- 696 (938)
..+.++++|++.+|++++|+||||||||||||+++++.. ..++ .|||+... .+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~l~~~~t 98 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLKEMT 98 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE-EECCCCCGGGGGSB
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE-EEEccCCccCCCCc
Confidence 346779999999999999999999999999999875421 0012 23433210 00
Q ss_pred ---------------------------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEe
Q 002306 697 ---------------------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIID 742 (938)
Q Consensus 697 ---------------------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllD 742 (938)
..++.++..+|..+......+++|++++|...++++ +.+|+++|||
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD 178 (257)
T 1g6h_A 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178 (257)
T ss_dssp HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 113456677787777777788899888777666554 7899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 743 ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 743 Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
|||+|+|+.....+ +.+++.+.+ .|.++|++||+.+.+ .+|++
T Consensus 179 EPts~LD~~~~~~l-~~~l~~l~~-~g~tvi~vtHd~~~~~~~~d~ 222 (257)
T 1g6h_A 179 EPIAGVAPGLAHDI-FNHVLELKA-KGITFLIIEHRLDIVLNYIDH 222 (257)
T ss_dssp STTTTCCHHHHHHH-HHHHHHHHH-TTCEEEEECSCCSTTGGGCSE
T ss_pred CCccCCCHHHHHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHhCCE
Confidence 99999999988888 777777776 489999999997654 46766
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.76 E-value=9.8e-19 Score=194.45 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=114.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhccccccccccc---c----
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRAS---I---- 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~~---~---- 696 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .|||+..+- +
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i-g~v~Q~~~l~~~ltv~e 106 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV-GLVFQNYALFQHMTVYD 106 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE-EEECGGGCCCTTSCHHH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE-EEEecCcccCCCCCHHH
Confidence 3567799999999999999999999999999999865311 012 244433211 1
Q ss_pred -----------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 697 -----------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 697 -----------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
..++.++..+|+.+...+..+++|++++|...+.+ .+.+|+++|||||++|||+.....+ +
T Consensus 107 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l-~ 185 (355)
T 1z47_A 107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL-R 185 (355)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHH-H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-H
Confidence 11345677788887778888899988877666555 4899999999999999999988888 6
Q ss_pred HHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 759 AICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
..++.+.++.|.++|++||+.+.+ .++++ ...+.++++..
T Consensus 186 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adr---------i~vl~~G~i~~ 226 (355)
T 1z47_A 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADR---------VLVLHEGNVEQ 226 (355)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHHHHCSE---------EEEEETTEEEE
T ss_pred HHHHHHHHhcCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 667777654589999999997765 67887 55555555543
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.76 E-value=1.3e-18 Score=194.04 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=114.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhccccccccccc---c-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRAS---I----- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~~---~----- 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-. .++ .|||+..+- +
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i-g~v~Q~~~l~~~ltv~en 95 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREV-GMVFQNYALYPHMTVFEN 95 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE-EEECSSCCCCTTSCHHHH
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcE-EEEecCcccCCCCCHHHH
Confidence 456799999999999999999999999999999865311 012 234433210 0
Q ss_pred ----------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 697 ----------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 697 ----------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
..++.++..+|+.+...+..+++|++++|...+.+ .+.+|+++|||||++|||+.....+ +.
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l-~~ 174 (359)
T 2yyz_A 96 IAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM-RA 174 (359)
T ss_dssp HHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH-HH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HH
Confidence 12446777888888788888899988877666555 4899999999999999999988888 66
Q ss_pred HHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 760 ICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.+..+.++.|.++|++||+.+.+ .++++ ...+.++++..
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adr---------i~vl~~G~i~~ 214 (359)
T 2yyz_A 175 EIKHLQQELGITSVYVTHDQAEAMTMASR---------IAVFNQGKLVQ 214 (359)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSE---------EEEEETTEEEE
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 66777654589999999997665 68887 44455555543
No 21
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.76 E-value=7e-19 Score=187.26 Aligned_cols=142 Identities=14% Similarity=0.066 Sum_probs=107.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cc-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SI----- 696 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~----- 696 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... .+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 356789999999999999999999999999999765311 011124444321 01
Q ss_pred -----------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCc-------EEEEeCCCCCCChhhHHHHH
Q 002306 697 -----------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRS-------LIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 697 -----------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~s-------lvllDEp~~gtd~~~~~~i~ 757 (938)
..++.++..+|+.+......+++|++++|...+++. +.+|+ ++||||||+|+|+.....+
T Consensus 94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l- 172 (249)
T 2qi9_C 94 LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL- 172 (249)
T ss_dssp HHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH-
T ss_pred HHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH-
Confidence 123456777888777777888899888777665554 67888 9999999999999988888
Q ss_pred HHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 758 WAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 758 ~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.+++.+.+ .|.++|++||+.+.. .++++
T Consensus 173 ~~~l~~l~~-~g~tviivtHd~~~~~~~~d~ 202 (249)
T 2qi9_C 173 DKILSALSQ-QGLAIVMSSHDLNHTLRHAHR 202 (249)
T ss_dssp HHHHHHHHH-TTCEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 777777776 489999999998776 57776
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.76 E-value=8.7e-19 Score=185.59 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=105.1
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------hhcccccccccc---cc--------
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------AQVGSFVPCDRA---SI-------- 696 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------aq~g~~vp~~~~---~~-------- 696 (938)
.++++|++.+ ++++|+||||||||||||+++++... .+.-.|+|+... .+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 93 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHH
Confidence 6689999999 99999999999999999999765311 011134554321 00
Q ss_pred -----------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 697 -----------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 697 -----------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
..++.++..+|..+...+..+++|++++|...++++ +.+|+++||||||+|+|+.....+ +.++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~-~~~l~~l 172 (240)
T 2onk_A 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL-MEELRFV 172 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHH-HHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-HHHHHHH
Confidence 113456777888777777788899888777665554 899999999999999999888888 6777777
Q ss_pred HhcCCCeEEEEeCChHHH-HHhhh
Q 002306 765 VEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.++.|.++|++||+.+.. .+|++
T Consensus 173 ~~~~g~tvi~vtHd~~~~~~~~d~ 196 (240)
T 2onk_A 173 QREFDVPILHVTHDLIEAAMLADE 196 (240)
T ss_dssp HHHHTCCEEEEESCHHHHHHHCSE
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCE
Confidence 643489999999997754 67777
No 23
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.76 E-value=2.1e-18 Score=192.45 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=114.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhccccccccccc---ch----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRAS---IS---- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~~---~~---- 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++.-. .++ .|||+..+- ++
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i-g~v~Q~~~l~~~ltv~en 95 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV-GLVFQNWALYPHMTVYKN 95 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE-EEECTTCCCCTTSCHHHH
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcE-EEEecCcccCCCCCHHHH
Confidence 456699999999999999999999999999999865311 012 244443211 11
Q ss_pred -----------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 698 -----------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 698 -----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
.++.++..+|+.+...+..+++|++++|...+.+ .+.+|+++|||||++|+|+.....+ ..
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l-~~ 174 (362)
T 2it1_A 96 IAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV-RA 174 (362)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHH-HH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH-HH
Confidence 1345667788877777788899988877666555 4899999999999999999988888 66
Q ss_pred HHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 760 ICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.++.+.++.|.++|++|||.+.+ .++++ ...+.++++..
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~a~~~adr---------i~vl~~G~i~~ 214 (362)
T 2it1_A 175 ELKRLQKELGITTVYVTHDQAEALAMADR---------IAVIREGEILQ 214 (362)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSE---------EEEEETTEEEE
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 77777654589999999997665 68887 55556666543
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.75 E-value=2.1e-18 Score=191.61 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=108.9
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhccccccccccc---c------
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRAS---I------ 696 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~~---~------ 696 (938)
+.++++|++.+|++++|+||||||||||||+++++.-. .++ .|||+..+- +
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i-g~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI-AFVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC-EEECTTCCCCTTSCHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcE-EEEecCcccCCCCCHHHHH
Confidence 66799999999999999999999999999999865311 112 245544311 1
Q ss_pred ------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002306 697 ------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (938)
Q Consensus 697 ------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (938)
..++.++..+|+.+...+..+++|++++|...+.++ +.+|+++|||||++|+|+.....+ +..++.
T Consensus 94 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l-~~~l~~ 172 (348)
T 3d31_A 94 EFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA-REMLSV 172 (348)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHH-HHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH-HHHHHH
Confidence 123456777888777777888999888777665554 889999999999999999988888 677777
Q ss_pred HHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 764 LVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 764 l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.++.|.++|++||+.+.+ .++++
T Consensus 173 l~~~~g~tii~vTHd~~~~~~~adr 197 (348)
T 3d31_A 173 LHKKNKLTVLHITHDQTEARIMADR 197 (348)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHCSE
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 7654689999999997654 67877
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.75 E-value=2.5e-18 Score=185.22 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=106.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-----------------hhhccccccccc-c---cch-----
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-----------------MAQVGSFVPCDR-A---SIS----- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-----------------laq~g~~vp~~~-~---~~~----- 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++.- ..+.-.|||+.. . ..+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 100 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV 100 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence 45668999999999999999999999999999976421 011113455431 0 011
Q ss_pred ---------------HHHHHHHhcCCc--hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q 002306 698 ---------------VRDCIFARVGAG--DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWA 759 (938)
Q Consensus 698 ---------------~~d~i~~~~~~~--d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~ 759 (938)
.++.++..+|+. +......+++|++++|...+++ .+.+|+++||||||+|+|+.....+ +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l-~~ 179 (266)
T 2yz2_A 101 AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL-LR 179 (266)
T ss_dssp HHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH-HH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHH-HH
Confidence 134567778887 7777778889988877666555 4899999999999999999888888 77
Q ss_pred HHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 760 ICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 760 il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
++..+.+ .|.++|++||+.+.. .+|++
T Consensus 180 ~l~~l~~-~g~tii~vtHd~~~~~~~~d~ 207 (266)
T 2yz2_A 180 IVEKWKT-LGKTVILISHDIETVINHVDR 207 (266)
T ss_dssp HHHHHHH-TTCEEEEECSCCTTTGGGCSE
T ss_pred HHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 7777776 489999999997765 46776
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.74 E-value=2.1e-18 Score=186.11 Aligned_cols=143 Identities=16% Similarity=0.087 Sum_probs=100.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---------------------hhhcccccccccc--cchHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDRA--SISVR 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------laq~g~~vp~~~~--~~~~~ 699 (938)
..+.++++|++.+|++++|+||||||||||||+++++.. ..++ .|||+... ..++.
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i-~~v~Q~~~l~~~tv~ 110 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV-AAVGQEPLLFGRSFR 110 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE-EEECSSCCCCSSBHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE-EEEecCCccccccHH
Confidence 457789999999999999999999999999999976421 0122 35554431 11222
Q ss_pred HHH-------------------------HHhc--CCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q 002306 700 DCI-------------------------FARV--GAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 700 d~i-------------------------~~~~--~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~ 751 (938)
+.+ +..+ |..+.+....+++|++++|...+++ .+.+|+++||||||+|+|+.
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~ 190 (271)
T 2ixe_A 111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190 (271)
T ss_dssp HHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 222 2222 2222233445678877776655554 58999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
....+ +.++..+.++.|.++|++||+.+....+++
T Consensus 191 ~~~~i-~~~l~~~~~~~g~tviivtHd~~~~~~~d~ 225 (271)
T 2ixe_A 191 NQLRV-QRLLYESPEWASRTVLLITQQLSLAERAHH 225 (271)
T ss_dssp HHHHH-HHHHHHCTTTTTSEEEEECSCHHHHTTCSE
T ss_pred HHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHhCCE
Confidence 88888 667776654358999999999887665555
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.74 E-value=2.7e-18 Score=182.83 Aligned_cols=141 Identities=16% Similarity=0.069 Sum_probs=99.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---------------------hhhccccccccccc--chHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDRAS--ISVR 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------laq~g~~vp~~~~~--~~~~ 699 (938)
..+.++++|++.+|++++|+||||||||||||+++++.. ..++ .|||+...- .++.
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i-~~v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV-GVVLQDNVLLNRSII 100 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE-EEECSSCCCTTSBHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE-EEEeCCCccccccHH
Confidence 356779999999999999999999999999999976521 0112 355544311 1222
Q ss_pred ---------------HHHHHhcCCchhhhh-----------cccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 700 ---------------DCIFARVGAGDCQLR-----------GVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 700 ---------------d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
..++..+++.+.+.. ..+.+|++++|...+++ .+.+|+++||||||+|+|+..
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~ 180 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 233344454433322 23678877777655555 489999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+ +.++..+. .|.++|++||+.+....+++
T Consensus 181 ~~~i-~~~l~~~~--~g~tviivtH~~~~~~~~d~ 212 (247)
T 2ff7_A 181 EHVI-MRNMHKIC--KGRTVIIIAHRLSTVKNADR 212 (247)
T ss_dssp HHHH-HHHHHHHH--TTSEEEEECSSGGGGTTSSE
T ss_pred HHHH-HHHHHHHc--CCCEEEEEeCCHHHHHhCCE
Confidence 8888 66777774 38999999999887655655
No 28
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.74 E-value=2e-18 Score=193.41 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=113.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc---cc----
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA---SI---- 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~---~~---- 696 (938)
..+.++++|++.+|++++|+||||||||||||+++++.-. .++ .|||+..+ .+
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i-g~v~Q~~~l~~~ltv~e 102 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI-SMVFQSYAVWPHMTVYE 102 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTE-EEEEC------CCCHHH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcE-EEEecCcccCCCCCHHH
Confidence 3467799999999999999999999999999999865311 012 23443321 00
Q ss_pred -----------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q 002306 697 -----------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (938)
Q Consensus 697 -----------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~ 758 (938)
..++.++..+|+.+...+..+++|++++|...+.+ .+.+|+++|||||++|||+.....+ .
T Consensus 103 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l-~ 181 (372)
T 1v43_A 103 NIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM-R 181 (372)
T ss_dssp HHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-H
Confidence 12345677788887777788888877766655554 5899999999999999999988888 6
Q ss_pred HHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 759 AICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 759 ~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
..++.+.++.|.++|++||+.+.+ .++++ ...+.++++..
T Consensus 182 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adr---------i~vl~~G~i~~ 222 (372)
T 1v43_A 182 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDR---------IAVMNRGQLLQ 222 (372)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSE---------EEEEETTEEEE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 667777654589999999997665 68887 55555555543
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.74 E-value=3e-18 Score=182.94 Aligned_cols=138 Identities=15% Similarity=0.081 Sum_probs=97.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh--Hh--------------------hhhc-cccccccccc---ch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN--IL--------------------MAQV-GSFVPCDRAS---IS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~--~~--------------------laq~-g~~vp~~~~~---~~ 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++ .. ..+. ..|+|+...- +.
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVT 96 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCB
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCC
Confidence 466699999999999999999999999999999885 10 0011 2345543211 11
Q ss_pred ------------------------HHHHHHHhcCC-chhhhhcccc-hHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 002306 698 ------------------------VRDCIFARVGA-GDCQLRGVST-FMQEMLETASILKG-ATDRSLIIIDELGRGTST 750 (938)
Q Consensus 698 ------------------------~~d~i~~~~~~-~d~~~~~~s~-f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~ 750 (938)
.++.++.++|. .+......++ +|++++|...++++ +.+|+++||||||+|+|+
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~ 176 (250)
T 2d2e_A 97 IANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176 (250)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCH
T ss_pred HHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 12234555676 3555566677 99888777666554 789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
.....+ +.++..+.+ .|.++|++||+.++..
T Consensus 177 ~~~~~l-~~~l~~l~~-~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 177 DALKVV-ARGVNAMRG-PNFGALVITHYQRILN 207 (250)
T ss_dssp HHHHHH-HHHHHHHCS-TTCEEEEECSSSGGGG
T ss_pred HHHHHH-HHHHHHHHh-cCCEEEEEecCHHHHH
Confidence 988888 777777765 5899999999987654
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.73 E-value=4e-18 Score=177.12 Aligned_cols=136 Identities=11% Similarity=0.072 Sum_probs=100.9
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh---------------hhcccccccccc---cch--------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM---------------AQVGSFVPCDRA---SIS-------- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l---------------aq~g~~vp~~~~---~~~-------- 697 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... .++
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 567799999999999999999999999999999765311 011134554321 111
Q ss_pred -----------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 002306 698 -----------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765 (938)
Q Consensus 698 -----------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~ 765 (938)
.++.++..+|..+. ....+++|++++|...+++ .+.+|+++|||||++|+|+.....+ +.+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l-~~~l~~~~ 180 (214)
T 1sgw_A 103 ASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV-LKSILEIL 180 (214)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHH-HHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHH-HHHHHHHH
Confidence 13345666777665 6667788877777666555 4889999999999999999988888 66777776
Q ss_pred hcCCCeEEEEeCChHHH
Q 002306 766 EEIRAPTLFATHFHELT 782 (938)
Q Consensus 766 ~~~~~~~l~~TH~~el~ 782 (938)
+ .|.++|++||+.+..
T Consensus 181 ~-~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 181 K-EKGIVIISSREELSY 196 (214)
T ss_dssp H-HHSEEEEEESSCCTT
T ss_pred h-CCCEEEEEeCCHHHH
Confidence 5 388999999997654
No 31
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.73 E-value=5.1e-18 Score=189.32 Aligned_cols=152 Identities=13% Similarity=0.060 Sum_probs=113.6
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh------------------------hhccccccccccc---c-
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRAS---I- 696 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l------------------------aq~g~~vp~~~~~---~- 696 (938)
+.++++|++.+|++++|+||||||||||||+++++... .++ .|||+..+- +
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~i-g~v~Q~~~l~~~lt 98 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYPNLT 98 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE-EEEETTSCCCTTSC
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCE-EEEeCCCccCCCCC
Confidence 66799999999999999999999999999999865311 011 234433210 0
Q ss_pred --------------------hHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 697 --------------------SVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 697 --------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
..++.++..+|+.+...+..+++|++++|...+.+ .+.+|+++|||||++|+|+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~ 178 (353)
T 1oxx_K 99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178 (353)
T ss_dssp HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 12345677788887778888899988877666555 489999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEE
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
+ +..++.+.++.|.++|++||+.+.+ .++++ ...+.++++..
T Consensus 179 l-~~~l~~l~~~~g~tvi~vTHd~~~~~~~adr---------i~vl~~G~i~~ 221 (353)
T 1oxx_K 179 A-RALVKEVQSRLGVTLLVVSHDPADIFAIADR---------VGVLVKGKLVQ 221 (353)
T ss_dssp H-HHHHHHHHHHHCCEEEEEESCHHHHHHHCSE---------EEEEETTEEEE
T ss_pred H-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE---------EEEEECCEEEE
Confidence 8 6667777654589999999997655 67887 55555555543
No 32
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=2.7e-18 Score=185.81 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=105.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----------------------hhcccccccccc-----
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA----- 694 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----------------------aq~g~~vp~~~~----- 694 (938)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .|+|+...
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i-~~v~Q~~~~~~~~ 112 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI-GFVSHSLLEKFQE 112 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE-EEECHHHHTTSCT
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE-EEEEcCcccccCC
Confidence 4577899999999999999999999999999998754210 112 23332210
Q ss_pred cch-------------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 002306 695 SIS-------------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGT 748 (938)
Q Consensus 695 ~~~-------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gt 748 (938)
.++ .++.++.++|..+...+..+++|++++|...++++ +.+|+++||||||+|+
T Consensus 113 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~L 192 (279)
T 2ihy_A 113 GERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192 (279)
T ss_dssp TSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred CCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 001 12345667787777777788898888776665554 7899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCeE--EEEeCChHHH-HHhhh
Q 002306 749 STYDGFGLAWAICEHLVEEIRAPT--LFATHFHELT-ALAHE 787 (938)
Q Consensus 749 d~~~~~~i~~~il~~l~~~~~~~~--l~~TH~~el~-~~~~~ 787 (938)
|+.....+ +.++..+.++ |.++ |++||+.+.. .+|++
T Consensus 193 D~~~~~~l-~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~ 232 (279)
T 2ihy_A 193 DFIARESL-LSILDSLSDS-YPTLAMIYVTHFIEEITANFSK 232 (279)
T ss_dssp CHHHHHHH-HHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCE
T ss_pred CHHHHHHH-HHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCE
Confidence 99988888 7777777764 8889 9999997754 46665
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.73 E-value=3.3e-18 Score=183.38 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=102.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------hcccccccccc-cch-------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRA-SIS------- 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q~g~~vp~~~~-~~~------- 697 (938)
.+.++++|++. |++++|+||||||||||||+++++. .. ++|.|+|+... ..+
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~ 96 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYL 96 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHH
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHH
Confidence 46679999999 9999999999999999999998764 21 12216665431 111
Q ss_pred ----------HHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 002306 698 ----------VRDCIFARVGAG-DCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV 765 (938)
Q Consensus 698 ----------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~ 765 (938)
.++.++.++|.. +......+++|+++++...+++ .+.+|+++||||||+|+|+.....+ +.++..+.
T Consensus 97 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l-~~~L~~~~ 175 (263)
T 2pjz_A 97 YEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI-SRYIKEYG 175 (263)
T ss_dssp HHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHH-HHHHHHSC
T ss_pred hhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHH-HHHHHHhc
Confidence 134566778887 7777788899988777665555 4789999999999999999888777 55555442
Q ss_pred hcCCCeEEEEeCChHHH-HHhh-h
Q 002306 766 EEIRAPTLFATHFHELT-ALAH-E 787 (938)
Q Consensus 766 ~~~~~~~l~~TH~~el~-~~~~-~ 787 (938)
. ++|++||+.+.. .+++ +
T Consensus 176 ---~-tviivtHd~~~~~~~~d~~ 195 (263)
T 2pjz_A 176 ---K-EGILVTHELDMLNLYKEYK 195 (263)
T ss_dssp ---S-EEEEEESCGGGGGGCTTSE
T ss_pred ---C-cEEEEEcCHHHHHHhcCce
Confidence 3 999999997664 5677 6
No 34
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.73 E-value=6.9e-18 Score=189.40 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=114.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-------------------------hccccccccccc---
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------------QVGSFVPCDRAS--- 695 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-------------------------q~g~~vp~~~~~--- 695 (938)
.+.++++|++.+|++++|+||||||||||||+|+++.-.. ++ .|||+..+-
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i-g~v~Q~~~l~~~ 95 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI-AMVFQSYALYPH 95 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE-EEECSCCCCCTT
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE-EEEeCCCccCCC
Confidence 4667999999999999999999999999999998653110 11 244443211
Q ss_pred ch---------------------HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 696 IS---------------------VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 696 ~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
++ .++.++..+|+.+...+..+++|++++|...+.+ .+.+|+++|||||++|+|+...
T Consensus 96 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 175 (372)
T 1g29_1 96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175 (372)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 11 1334567778877777788899988877665555 4889999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhhcccccccccccceeEEEEEEE
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
..+ ...++.+.++.|.++|++||+.+.+ .++++ ...+.++++...
T Consensus 176 ~~l-~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr---------i~vl~~G~i~~~ 221 (372)
T 1g29_1 176 VRM-RAELKKLQRQLGVTTIYVTHDQVEAMTMGDR---------IAVMNRGVLQQV 221 (372)
T ss_dssp HHH-HHHHHHHHHHHTCEEEEEESCHHHHHHHCSE---------EEEEETTEEEEE
T ss_pred HHH-HHHHHHHHHhcCCEEEEECCCHHHHHHhCCE---------EEEEeCCEEEEe
Confidence 888 6667777654589999999997665 68887 555666666443
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.72 E-value=5.4e-18 Score=182.60 Aligned_cols=143 Identities=17% Similarity=0.098 Sum_probs=101.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH-hh---------------------hhc-cccccccccc---c
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LM---------------------AQV-GSFVPCDRAS---I 696 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~l---------------------aq~-g~~vp~~~~~---~ 696 (938)
..+.++++|++.+|++++|+||||||||||||+++++. +. .+. -.|+|+...- +
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~ 112 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGV 112 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccc
Confidence 45677999999999999999999999999999998752 00 011 1245443210 0
Q ss_pred ----------------------------hHHHHHHHhcCCch-hhhhccc-chHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002306 697 ----------------------------SVRDCIFARVGAGD-CQLRGVS-TFMQEMLETASILKG-ATDRSLIIIDELG 745 (938)
Q Consensus 697 ----------------------------~~~d~i~~~~~~~d-~~~~~~s-~f~~e~~~~~~il~~-a~~~slvllDEp~ 745 (938)
..++.++.++|..+ ......+ ++|++++|...++++ +.+|+++||||||
T Consensus 113 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPt 192 (267)
T 2zu0_C 113 SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 192 (267)
T ss_dssp BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 01234566677653 3444444 488877776665554 7899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH-H-hhh
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA-L-AHE 787 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~-~-~~~ 787 (938)
+|+|+.....+ +.+++.+.+ .|+++|++||+.++.. + +++
T Consensus 193 s~LD~~~~~~l-~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~ 234 (267)
T 2zu0_C 193 SGLDIDALKVV-ADGVNSLRD-GKRSFIIVTHYQRILDYIKPDY 234 (267)
T ss_dssp TTCCHHHHHHH-HHHHHTTCC-SSCEEEEECSSGGGGGTSCCSE
T ss_pred CCCCHHHHHHH-HHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCE
Confidence 99999988888 677777754 5899999999987664 3 555
No 36
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.71 E-value=5.8e-18 Score=180.00 Aligned_cols=142 Identities=15% Similarity=0.052 Sum_probs=99.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~-- 698 (938)
..+.++++|++.+|++++|+||||||||||||+++++.-. .+.-.|+|+...- .++
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 94 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE 94 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHH
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHH
Confidence 3466799999999999999999999999999999765310 0112345543210 111
Q ss_pred --------------HHHHHHhcCCchhhh-----------hcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 699 --------------RDCIFARVGAGDCQL-----------RGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 699 --------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
+..++..+++.+.+. ...+++|+++++...+++ .+.+|+++||||||+|+|+..
T Consensus 95 nl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~ 174 (243)
T 1mv5_A 95 NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174 (243)
T ss_dssp HTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSS
T ss_pred HHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 223344445443322 223578877766655554 478999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+ +.++..+. .|+++|++||+.+....+++
T Consensus 175 ~~~i-~~~l~~~~--~~~tvi~vtH~~~~~~~~d~ 206 (243)
T 1mv5_A 175 ESMV-QKALDSLM--KGRTTLVIAHRLSTIVDADK 206 (243)
T ss_dssp CCHH-HHHHHHHH--TTSEEEEECCSHHHHHHCSE
T ss_pred HHHH-HHHHHHhc--CCCEEEEEeCChHHHHhCCE
Confidence 8888 66677765 38999999999887766665
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.71 E-value=4.3e-18 Score=179.22 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=96.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------hccccccccccc--chHHH------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------QVGSFVPCDRAS--ISVRD------------ 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------q~g~~vp~~~~~--~~~~d------------ 700 (938)
..+.++++|++.+|++++|+||||||||||||+++++.... ++ .|+|+...- .++.+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i-~~v~q~~~~~~~tv~enl~~~~~~~~~~ 99 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI-SFCSQFSWIMPGTIKENIIFGVSYDEYR 99 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCE-EEECSSCCCCSBCHHHHHHTTSCCCHHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEE-EEEecCCcccCCCHHHHhhccCCcChHH
Confidence 45677999999999999999999999999999998753211 12 245543211 12222
Q ss_pred --HHHHhcCCchhhh-----------hcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q 002306 701 --CIFARVGAGDCQL-----------RGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE 766 (938)
Q Consensus 701 --~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~ 766 (938)
.++...++.+.+. ...+++|++++|...+++ .+.+|+++|||||++|+|+.....+...+++.+.
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~- 178 (229)
T 2pze_A 100 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM- 178 (229)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-
T ss_pred HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-
Confidence 2223334333221 123578877777655554 4789999999999999999888777332333333
Q ss_pred cCCCeEEEEeCChHHHHHhhh
Q 002306 767 EIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 767 ~~~~~~l~~TH~~el~~~~~~ 787 (938)
.|.++|++||+.+....+++
T Consensus 179 -~~~tvi~vtH~~~~~~~~d~ 198 (229)
T 2pze_A 179 -ANKTRILVTSKMEHLKKADK 198 (229)
T ss_dssp -TTSEEEEECCCHHHHHHCSE
T ss_pred -CCCEEEEEcCChHHHHhCCE
Confidence 37899999999887766666
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.69 E-value=2.2e-17 Score=177.08 Aligned_cols=141 Identities=13% Similarity=0.033 Sum_probs=97.5
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------------------hhcccccccccc--cchHHH--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------------------AQVGSFVPCDRA--SISVRD-- 700 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------------------aq~g~~vp~~~~--~~~~~d-- 700 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.|+|+... ..++.+
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 577799999999999999999999999999999765310 011134554431 112222
Q ss_pred -------------HHHHhcCCchhh-----------hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q 002306 701 -------------CIFARVGAGDCQ-----------LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFG 755 (938)
Q Consensus 701 -------------~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~ 755 (938)
.++..+++.+.+ ....+++|++++|...+++ .+.+|+++||||||+|+|+.....
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 193 (260)
T 2ghi_A 114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193 (260)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 223334443322 1233578877776655554 478999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 756 LAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 756 i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+ +.++..+.+ +.++|++||+.+....+++
T Consensus 194 i-~~~l~~l~~--~~tviivtH~~~~~~~~d~ 222 (260)
T 2ghi_A 194 F-QKAVEDLRK--NRTLIIIAHRLSTISSAES 222 (260)
T ss_dssp H-HHHHHHHTT--TSEEEEECSSGGGSTTCSE
T ss_pred H-HHHHHHhcC--CCEEEEEcCCHHHHHhCCE
Confidence 7 677777753 7899999999876555554
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=177.03 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=95.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------hcccccccccc--cchHHH------------
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------QVGSFVPCDRA--SISVRD------------ 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------q~g~~vp~~~~--~~~~~d------------ 700 (938)
..+.++++|++.+|++++|+||||||||||||+++++.... ++ .|+|+... ..++.+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i-~~v~Q~~~~~~~tv~enl~~~~~~~~~~ 96 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSV-AYVPQQAWIQNDSLRENILFGCQLEEPY 96 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCE-EEECSSCCCCSEEHHHHHHTTSCCCTTH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-EEEcCCCcCCCcCHHHHhhCccccCHHH
Confidence 35677999999999999999999999999999998753211 12 24554321 112222
Q ss_pred --HHHHhcCCchh-----------hhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHH---H
Q 002306 701 --CIFARVGAGDC-----------QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICE---H 763 (938)
Q Consensus 701 --~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~---~ 763 (938)
++...++..+. +....+.+|++++|...+++ .+.+|+++|||||++|+|+.....+ +.++. .
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i-~~~l~~~~~ 175 (237)
T 2cbz_A 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI-FENVIGPKG 175 (237)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH-HHHTTSTTS
T ss_pred HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHHh
Confidence 22222222211 22345678877777655554 4789999999999999999888777 44442 2
Q ss_pred HHhcCCCeEEEEeCChHHHHHhhh
Q 002306 764 LVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 764 l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+. .|.++|++||+.+....+++
T Consensus 176 ~~--~~~tviivtH~~~~~~~~d~ 197 (237)
T 2cbz_A 176 ML--KNKTRILVTHSMSYLPQVDV 197 (237)
T ss_dssp TT--TTSEEEEECSCSTTGGGSSE
T ss_pred hc--CCCEEEEEecChHHHHhCCE
Confidence 32 38899999999876655554
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.68 E-value=2e-17 Score=179.74 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=95.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------hhccccccccccc--chHHHHH-----------
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------AQVGSFVPCDRAS--ISVRDCI----------- 702 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------aq~g~~vp~~~~~--~~~~d~i----------- 702 (938)
.+.++++|++.+|++++|+||||||||||||+++++... .++ .|+|+...- .++.+.+
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i-~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 130 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI-SFCSQNSWIMPGTIKENIIGVSYDEYRYR 130 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCE-EEECSSCCCCSSBHHHHHHTTCCCHHHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE-EEEeCCCccCcccHHHHhhCcccchHHHH
Confidence 456689999999999999999999999999999875321 112 255554311 1233333
Q ss_pred --HHhcCCchhhhh-----------cccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q 002306 703 --FARVGAGDCQLR-----------GVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEI 768 (938)
Q Consensus 703 --~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~ 768 (938)
+...++.+.+.. ..+.+|++++|...+++ .+.+|+++|||||++|+|+.....+...+++.+. .
T Consensus 131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~ 208 (290)
T 2bbs_A 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A 208 (290)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--T
T ss_pred HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--C
Confidence 222333222211 12578877777655555 4789999999999999999888777322333333 3
Q ss_pred CCeEEEEeCChHHHHHhhh
Q 002306 769 RAPTLFATHFHELTALAHE 787 (938)
Q Consensus 769 ~~~~l~~TH~~el~~~~~~ 787 (938)
|.++|++||+.+....+++
T Consensus 209 ~~tviivtHd~~~~~~~d~ 227 (290)
T 2bbs_A 209 NKTRILVTSKMEHLKKADK 227 (290)
T ss_dssp TSEEEEECCCHHHHHHSSE
T ss_pred CCEEEEEecCHHHHHcCCE
Confidence 7899999999887766665
No 41
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.68 E-value=4.6e-17 Score=177.90 Aligned_cols=142 Identities=16% Similarity=0.107 Sum_probs=99.5
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc--chHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS--ISVRD 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~d 700 (938)
..+.++++|++.+|++++|+||||||||||+|+++++.- +.+.-.|||++..- .++.+
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~e 146 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIAD 146 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHH
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHH
Confidence 457789999999999999999999999999999875421 11122356654321 12222
Q ss_pred H---------------HHHhcCCchhhh-----------hcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 701 C---------------IFARVGAGDCQL-----------RGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 701 ~---------------i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
. .....++.+.+. .....+|++++|...|++ .+.+|+++||||||+|+|+...
T Consensus 147 Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~ 226 (306)
T 3nh6_A 147 NIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226 (306)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHH
T ss_pred HHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 2 223333333221 222567777766655555 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..| ...+..+.+ ++++|++||+++....+++
T Consensus 227 ~~i-~~~l~~l~~--~~Tvi~itH~l~~~~~aD~ 257 (306)
T 3nh6_A 227 RAI-QASLAKVCA--NRTTIVVAHRLSTVVNADQ 257 (306)
T ss_dssp HHH-HHHHHHHHT--TSEEEEECCSHHHHHTCSE
T ss_pred HHH-HHHHHHHcC--CCEEEEEEcChHHHHcCCE
Confidence 888 666666654 6899999999988776766
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.66 E-value=2.7e-17 Score=185.31 Aligned_cols=143 Identities=9% Similarity=-0.021 Sum_probs=103.6
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh-------------------hhhcccccccccccc--h---
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL-------------------MAQVGSFVPCDRASI--S--- 697 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~-------------------laq~g~~vp~~~~~~--~--- 697 (938)
...+.++++|++.+|++++|+||||||||||||+|+++.- ....-.|||+..+-+ +
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~e 112 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRK 112 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHH
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHH
Confidence 3467789999999999999999999999999999986531 001112455443211 1
Q ss_pred -----------HHHHHHHhcCCchhhhhcccc-----------hHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q 002306 698 -----------VRDCIFARVGAGDCQLRGVST-----------FMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 698 -----------~~d~i~~~~~~~d~~~~~~s~-----------f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~ 754 (938)
.+..++..+++.+.+.+.... +|++++|...+.+ .+.+|+++|||||++|||+....
T Consensus 113 nl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~ 192 (390)
T 3gd7_A 113 NLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192 (390)
T ss_dssp HHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHH
T ss_pred HhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 133456667776666555555 7877776655555 47899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+ ...++.+. .++++|++||+.+....+++
T Consensus 193 ~l-~~~l~~~~--~~~tvi~vtHd~e~~~~aDr 222 (390)
T 3gd7_A 193 II-RRTLKQAF--ADCTVILCEARIEAMLECDQ 222 (390)
T ss_dssp HH-HHHHHTTT--TTSCEEEECSSSGGGTTCSE
T ss_pred HH-HHHHHHHh--CCCEEEEEEcCHHHHHhCCE
Confidence 77 55555543 47999999999887666776
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.64 E-value=5.5e-16 Score=182.97 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=104.7
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--h------------cc-----------------ccccccc
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--Q------------VG-----------------SFVPCDR 693 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--q------------~g-----------------~~vp~~~ 693 (938)
+.++++ .+.+|++++|+||||||||||||+++++.... . .| .++++..
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~ 115 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV 115 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence 455787 77899999999999999999999997643110 0 00 0111110
Q ss_pred c--------c----------chHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q 002306 694 A--------S----------ISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGF 754 (938)
Q Consensus 694 ~--------~----------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~ 754 (938)
. . ...++.++.++|..+......+++|+++++...|+++ +.+|+++||||||+|||+....
T Consensus 116 ~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~ 195 (538)
T 1yqt_A 116 DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL 195 (538)
T ss_dssp GGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred hhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 0 0 0124567888898887888889999888777666654 7899999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 755 ~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+ ..+++.+.+ .|.++|++||+.++. .+|++
T Consensus 196 ~l-~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dr 227 (538)
T 1yqt_A 196 NA-ARAIRRLSE-EGKSVLVVEHDLAVLDYLSDI 227 (538)
T ss_dssp HH-HHHHHHHHH-TTCEEEEECSCHHHHHHHCSE
T ss_pred HH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 87 777888876 599999999998765 46766
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.62 E-value=4.8e-16 Score=182.99 Aligned_cols=141 Identities=18% Similarity=0.102 Sum_probs=102.3
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--------hcccccccccc---cch-----------------
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--------QVGSFVPCDRA---SIS----------------- 697 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--------q~g~~vp~~~~---~~~----------------- 697 (938)
....+|++.+|++++|+||||||||||+|+++++.... ..-.++|+... ...
T Consensus 284 l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 363 (538)
T 3ozx_A 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSS 363 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTS
T ss_pred EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhH
Confidence 33445566889999999999999999999998753211 11123343211 111
Q ss_pred -HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEE
Q 002306 698 -VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775 (938)
Q Consensus 698 -~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~ 775 (938)
.++.++.++|+.+...+..+++|++++|...|++. +.+|+++||||||+|+|+.....+ +.+++.+.++.|.++|++
T Consensus 364 ~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i-~~~l~~l~~~~g~tvi~v 442 (538)
T 3ozx_A 364 WFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV-AKAIKRVTRERKAVTFII 442 (538)
T ss_dssp HHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH-HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhCCCEEEEE
Confidence 12344556677666777788899887776665554 789999999999999999988888 677777765468999999
Q ss_pred eCChHHHH-Hhhh
Q 002306 776 THFHELTA-LAHE 787 (938)
Q Consensus 776 TH~~el~~-~~~~ 787 (938)
|||.+++. +|++
T Consensus 443 sHdl~~~~~~aDr 455 (538)
T 3ozx_A 443 DHDLSIHDYIADR 455 (538)
T ss_dssp CSCHHHHHHHCSE
T ss_pred eCCHHHHHHhCCE
Confidence 99987764 6776
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.61 E-value=1.3e-15 Score=181.56 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=105.2
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh--h------------cc-----------------cccccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA--Q------------VG-----------------SFVPCD 692 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la--q------------~g-----------------~~vp~~ 692 (938)
++.++++ .+.+|++++|+||||||||||||+++++.... . .| .++|+.
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4666888 77899999999999999999999997643110 0 00 011111
Q ss_pred cc------------------cchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q 002306 693 RA------------------SISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 693 ~~------------------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~ 753 (938)
.. ....++.++..+|+.+...+..+++|++++|...|+++ +.+|+++||||||+|||+...
T Consensus 185 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~ 264 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQR 264 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 00 01234567888998888888889999888777666554 789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
..+ ..+++.+.+ .|.++|++||+.++. .++++
T Consensus 265 ~~l-~~~L~~l~~-~g~tvIivsHdl~~~~~~adr 297 (607)
T 3bk7_A 265 LKV-ARVIRRLAN-EGKAVLVVEHDLAVLDYLSDV 297 (607)
T ss_dssp HHH-HHHHHHHHH-TTCEEEEECSCHHHHHHHCSE
T ss_pred HHH-HHHHHHHHh-cCCEEEEEecChHHHHhhCCE
Confidence 888 777788876 589999999998765 45554
No 46
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.61 E-value=6.8e-16 Score=183.74 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=103.1
Q ss_pred ccCCccccCCCC-----eEEEEEecCCCCchhhhhhhhhhHhhhh------c-ccccccccc---cch------------
Q 002306 645 IPNDCKLIRGKS-----WFQIITGPNMGGKSTFIRQVGVNILMAQ------V-GSFVPCDRA---SIS------------ 697 (938)
Q Consensus 645 v~n~~~l~~~~~-----~~~~itGpNg~GKSTllr~i~~~~~laq------~-g~~vp~~~~---~~~------------ 697 (938)
+.++++|++..| ++++|+||||||||||||+++++.-... . -.++|+... ...
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcc
Confidence 456788887777 7799999999999999999987542211 0 123333211 011
Q ss_pred -----HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002306 698 -----VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (938)
Q Consensus 698 -----~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (938)
..+.++..+++.+......+++|++++|...|++ .+.+|+++||||||+|+|+.....+ +.+++.+..+.|.+
T Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i-~~ll~~l~~~~g~t 520 (608)
T 3j16_B 442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC-SKVIRRFILHNKKT 520 (608)
T ss_dssp TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHH-HHHHHHHHHHHTCE
T ss_pred cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHhCCCE
Confidence 2234556667666667778889988877666655 4789999999999999999988888 67777765435899
Q ss_pred EEEEeCChHHH-HHhhh
Q 002306 772 TLFATHFHELT-ALAHE 787 (938)
Q Consensus 772 ~l~~TH~~el~-~~~~~ 787 (938)
+|++|||.+++ .++++
T Consensus 521 viivtHdl~~~~~~aDr 537 (608)
T 3j16_B 521 AFIVEHDFIMATYLADK 537 (608)
T ss_dssp EEEECSCHHHHHHHCSE
T ss_pred EEEEeCCHHHHHHhCCE
Confidence 99999998776 46766
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.60 E-value=1.2e-15 Score=181.95 Aligned_cols=142 Identities=17% Similarity=0.093 Sum_probs=103.2
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-------hhcccccccccc---cch-----------------
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-------AQVGSFVPCDRA---SIS----------------- 697 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-------aq~g~~vp~~~~---~~~----------------- 697 (938)
..+.++|++.+|++++|+||||||||||||+++++... ...-.|+|+... ..+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 450 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNF 450 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHH
Confidence 34455566688999999999999999999999875321 111134554421 111
Q ss_pred HHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 698 VRDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 698 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
.++.++.++|..+...+..+++|++++|...+++ .+.+|+++||||||+|+|+.....+ ..+++.+.++.|.++|++|
T Consensus 451 ~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tvi~vs 529 (607)
T 3bk7_A 451 YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV-SRAIRHLMEKNEKTALVVE 529 (607)
T ss_dssp HHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH-HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhCCCEEEEEe
Confidence 1234566677777777778889887777655555 5889999999999999999988888 6777777644689999999
Q ss_pred CChHHHH-Hhhh
Q 002306 777 HFHELTA-LAHE 787 (938)
Q Consensus 777 H~~el~~-~~~~ 787 (938)
||.+++. ++++
T Consensus 530 Hd~~~~~~~adr 541 (607)
T 3bk7_A 530 HDVLMIDYVSDR 541 (607)
T ss_dssp SCHHHHHHHCSE
T ss_pred CCHHHHHHhCCE
Confidence 9987764 6665
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.59 E-value=1.3e-15 Score=179.90 Aligned_cols=142 Identities=18% Similarity=0.099 Sum_probs=102.0
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-------hcccccccccc---cchH----------------
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------QVGSFVPCDRA---SISV---------------- 698 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-------q~g~~vp~~~~---~~~~---------------- 698 (938)
..+.++|++..|++++|+||||||||||||+++++.... ..-.|+|+... ..++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~ 380 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNF 380 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHH
Confidence 344556666889999999999999999999998753211 11135554431 1111
Q ss_pred -HHHHHHhcCCchhhhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 699 -RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 699 -~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
++.++.++|..+...+..+++|+++++...+++ .+.+|.++||||||+|+|+.....+ +.+++.+.++.|.++|++|
T Consensus 381 ~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i-~~~l~~l~~~~g~tvi~vs 459 (538)
T 1yqt_A 381 YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV-SRAIRHLMEKNEKTALVVE 459 (538)
T ss_dssp HHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH-HHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhCCCEEEEEe
Confidence 223445566666667777888887777665555 4889999999999999999988888 6777777543589999999
Q ss_pred CChHHH-HHhhh
Q 002306 777 HFHELT-ALAHE 787 (938)
Q Consensus 777 H~~el~-~~~~~ 787 (938)
||.+++ .+|++
T Consensus 460 Hd~~~~~~~~dr 471 (538)
T 1yqt_A 460 HDVLMIDYVSDR 471 (538)
T ss_dssp SCHHHHHHHCSE
T ss_pred CCHHHHHHhCCE
Confidence 998765 46766
No 49
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.58 E-value=2e-15 Score=183.85 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=65.5
Q ss_pred HHhcCCchh-hhhcccchHHHHHHHHHHHHh-CCCCc--EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 703 FARVGAGDC-QLRGVSTFMQEMLETASILKG-ATDRS--LIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 703 ~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-a~~~s--lvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
+.++|+.+. ..+..+++|++++|...|+++ +.+|+ ++||||||+|+|+.....+ ..+++.+.+ .|.++|++|||
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l-~~~l~~l~~-~g~tvi~vtHd 263 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL-IATLKSMRD-LGNTLIVVEHD 263 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHH-TTCEEEEECCC
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHH-HHHHHHHHH-cCCEEEEEeCC
Confidence 444555433 456677888888777666665 56766 9999999999999999998 778888876 59999999999
Q ss_pred hHHHHHhhh
Q 002306 779 HELTALAHE 787 (938)
Q Consensus 779 ~el~~~~~~ 787 (938)
+++...+++
T Consensus 264 ~~~~~~~d~ 272 (670)
T 3ux8_A 264 EDTMLAADY 272 (670)
T ss_dssp HHHHHHCSE
T ss_pred HHHHhhCCE
Confidence 988877776
No 50
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.58 E-value=5.2e-15 Score=177.13 Aligned_cols=142 Identities=13% Similarity=0.036 Sum_probs=100.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh--------------------hhccccccccccc--chH--
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM--------------------AQVGSFVPCDRAS--ISV-- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~-- 698 (938)
..+.++++|++++|++++|+|||||||||++|.++++.-. .+.-++||++..- .++
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIAN 435 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHH
Confidence 4678899999999999999999999999999998754210 1112355554311 111
Q ss_pred --------------HHHHHHhcCCchhhhh-----------cccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 699 --------------RDCIFARVGAGDCQLR-----------GVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 699 --------------~d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
+...+...++.+.+.. +.+.+|++++|...+.+ .+.+|+++||||||+|+|+..
T Consensus 436 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 436 NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred HHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 2233344444433322 23567777766655555 478999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+ ...++.+.+ |+++|++||+.+....+|+
T Consensus 516 ~~~i-~~~l~~~~~--~~tvi~itH~~~~~~~~d~ 547 (582)
T 3b5x_A 516 ERAI-QAALDELQK--NKTVLVIAHRLSTIEQADE 547 (582)
T ss_pred HHHH-HHHHHHHcC--CCEEEEEecCHHHHHhCCE
Confidence 8888 666666653 8999999999988777776
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.5e-15 Score=176.71 Aligned_cols=140 Identities=14% Similarity=0.054 Sum_probs=102.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccc----------------------------------c
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF----------------------------------V 689 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~----------------------------------v 689 (938)
|..+.+. .+.+|++++|+||||||||||||+++++.... .|.. .
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~-~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC-CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhc
Confidence 4444444 35789999999999999999999987642110 0000 0
Q ss_pred cccc-----------------------ccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 002306 690 PCDR-----------------------ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELG 745 (938)
Q Consensus 690 p~~~-----------------------~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~ 745 (938)
|... .....++.++.++|+.+...+..+++|++++|...|+++ +.+|+++||||||
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt 249 (608)
T 3j16_B 170 PQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249 (608)
T ss_dssp CCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred hhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 0000 000234567888898888888889999888777666654 7899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 746 RGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 746 ~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+|||+.....+ ..+++.+.+ .|.++|++||+++.. .++++
T Consensus 250 s~LD~~~~~~l-~~~l~~l~~-~g~tvi~vtHdl~~~~~~~dr 290 (608)
T 3j16_B 250 SYLDVKQRLNA-AQIIRSLLA-PTKYVICVEHDLSVLDYLSDF 290 (608)
T ss_dssp TTCCHHHHHHH-HHHHHGGGT-TTCEEEEECSCHHHHHHHCSE
T ss_pred cCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 99999988888 777787876 589999999998665 46655
No 52
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.57 E-value=1.1e-14 Score=174.74 Aligned_cols=142 Identities=14% Similarity=0.069 Sum_probs=98.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhcccccccccc--cchHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRA--SISVRD 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~--~~~~~d 700 (938)
..+.++++|++++|++++|+|||||||||++|+++++.- +.+.-.+||++.. ..++.+
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 447 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE 447 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHH
Confidence 468899999999999999999999999999999875421 1111235665432 112333
Q ss_pred HH---------------HHhcCCchhhhh-----------cccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 701 CI---------------FARVGAGDCQLR-----------GVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 701 ~i---------------~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
.+ ....+..+.+.. +-..+|++++|...+.+ .+.+|+++||||||+|+|+...
T Consensus 448 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~ 527 (598)
T 3qf4_B 448 NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527 (598)
T ss_dssp HHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 32 122222222211 12467777766655554 4789999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ...+..+. .|+++|++||+.+....+|+
T Consensus 528 ~~i-~~~l~~~~--~~~t~i~itH~l~~~~~~d~ 558 (598)
T 3qf4_B 528 KSI-QAAMWKLM--EGKTSIIIAHRLNTIKNADL 558 (598)
T ss_dssp HHH-HHHHHHHH--TTSEEEEESCCTTHHHHCSE
T ss_pred HHH-HHHHHHHc--CCCEEEEEecCHHHHHcCCE
Confidence 888 56666665 38999999999988777776
No 53
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.57 E-value=5e-15 Score=177.70 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=99.3
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---------------------hhhccccccccccc--chH--
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDRAS--ISV-- 698 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------laq~g~~vp~~~~~--~~~-- 698 (938)
.+.++++|++++|++++|+|||||||||++|.++++.- ..++ .+||++..- .++
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i-~~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI-GTVSQEPILFSCSIAE 436 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE-EEECSSCCCCSSBHHH
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce-EEEccCCcccCCCHHH
Confidence 57789999999999999999999999999999875421 1122 355544310 112
Q ss_pred ----------------HHHHHHhcCCchhhhh-----------cccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002306 699 ----------------RDCIFARVGAGDCQLR-----------GVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (938)
Q Consensus 699 ----------------~d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~ 750 (938)
+.+.+...++.+.+.. +.+.+|++++|...+.+ .+.+|+++||||||+|+|+
T Consensus 437 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp HHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred HHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 2233444454433211 12567777766655554 4789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.....+ ...++.+.+ ++++|++||+++....+++
T Consensus 517 ~~~~~i-~~~l~~~~~--~~tvi~itH~~~~~~~~d~ 550 (595)
T 2yl4_A 517 ENEYLV-QEALDRLMD--GRTVLVIAHRLSTIKNANM 550 (595)
T ss_dssp HHHHHH-HHHHHHHHT--TSEEEEECCCHHHHHHSSE
T ss_pred HHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHcCCE
Confidence 887777 666666654 7899999999988777776
No 54
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.56 E-value=8.8e-15 Score=174.90 Aligned_cols=142 Identities=18% Similarity=0.083 Sum_probs=98.0
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc--chHHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS--ISVRD 700 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~d 700 (938)
..+.++++|++++|++++|+|||||||||++|++++..- +.+.-.+||++..- -++.+
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 433 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE 433 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHH
Confidence 467889999999999999999999999999999875421 11112356654311 12222
Q ss_pred H---------------HHHhcCCchhhh-----------hcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q 002306 701 C---------------IFARVGAGDCQL-----------RGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDG 753 (938)
Q Consensus 701 ~---------------i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~ 753 (938)
. .....+..+.+. .+-..+|++++|...+.+ .+.+|+++||||||+|+|+...
T Consensus 434 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~ 513 (578)
T 4a82_A 434 NILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513 (578)
T ss_dssp HHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 2 223333333221 223467777766655554 4789999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 754 ~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+ ...++.+. .++++|++||+.+....||+
T Consensus 514 ~~i-~~~l~~~~--~~~t~i~itH~l~~~~~~d~ 544 (578)
T 4a82_A 514 SII-QEALDVLS--KDRTTLIVAHRLSTITHADK 544 (578)
T ss_dssp HHH-HHHHHHHT--TTSEEEEECSSGGGTTTCSE
T ss_pred HHH-HHHHHHHc--CCCEEEEEecCHHHHHcCCE
Confidence 777 66666664 37899999999887666666
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.56 E-value=1.2e-14 Score=171.07 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=97.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhh--------------------------------cc-----ccccccc---
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--------------------------------VG-----SFVPCDR--- 693 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq--------------------------------~g-----~~vp~~~--- 693 (938)
.+|++++|+||||||||||||+++++..... .+ .+++...
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 6799999999999999999999976421100 00 0010000
Q ss_pred -----------ccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q 002306 694 -----------ASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAIC 761 (938)
Q Consensus 694 -----------~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il 761 (938)
......+.++..+|..+......+++|++++|...|+++ +.+|+++||||||+|||+.....+ ..++
T Consensus 103 ~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l-~~~l 181 (538)
T 3ozx_A 103 KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM-AKAI 181 (538)
T ss_dssp CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH-HHHH
T ss_pred cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHH
Confidence 001124567888898888888889999888877666655 789999999999999999988888 7777
Q ss_pred HHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 762 EHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
+.+.+ |.++|++||+.+.. .+|++
T Consensus 182 ~~l~~--g~tii~vsHdl~~~~~~~d~ 206 (538)
T 3ozx_A 182 RELLK--NKYVIVVDHDLIVLDYLTDL 206 (538)
T ss_dssp HHHCT--TSEEEEECSCHHHHHHHCSE
T ss_pred HHHhC--CCEEEEEEeChHHHHhhCCE
Confidence 77753 89999999998665 46665
No 56
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.56 E-value=1.2e-15 Score=153.23 Aligned_cols=135 Identities=10% Similarity=0.003 Sum_probs=81.4
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhH-hh--hhcccccccccccchHHH----H------HHHhcCCchhhhh
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI-LM--AQVGSFVPCDRASISVRD----C------IFARVGAGDCQLR 714 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~-~l--aq~g~~vp~~~~~~~~~d----~------i~~~~~~~d~~~~ 714 (938)
+++|++.+|++++|+||||||||||+|++..-. .. ..+..+++.......+.. . ...+.|......
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 79 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVD- 79 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEE-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEE-
Confidence 467788899999999999999999999632100 00 001112222222211111 1 111233221111
Q ss_pred cccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhh----------------HHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 715 GVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYD----------------GFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 715 ~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~----------------~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
.....++++++...++ ..+.+|.+++||||++|+|+.. ...+ ..++..+.++ |.++|++||
T Consensus 80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l-~~~l~~l~~~-g~tvi~vtH 157 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM-KKSIKGLQRE-GFRYVYILN 157 (171)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH-HHHSTTHHHH-TCSEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh-hhhhhhHHhc-CCcEEEEeC
Confidence 1222355555544444 4578999999999999999983 3555 5666667664 999999999
Q ss_pred ChHHHHHh
Q 002306 778 FHELTALA 785 (938)
Q Consensus 778 ~~el~~~~ 785 (938)
+++.+.-.
T Consensus 158 ~~~~~~~~ 165 (171)
T 4gp7_A 158 SPEEVEEV 165 (171)
T ss_dssp SHHHHHHE
T ss_pred CHHHhhhh
Confidence 98876533
No 57
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.56 E-value=2.5e-14 Score=171.17 Aligned_cols=142 Identities=15% Similarity=0.034 Sum_probs=99.4
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhccccccccccc--chHH-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRAS--ISVR- 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~- 699 (938)
..+.++++|++++|++++|+|||||||||++|.++++.- +.+.-.+||++..- .++.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN 435 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHH
Confidence 457789999999999999999999999999999875421 01112355554311 1222
Q ss_pred ---------------HHHHHhcCCchhhhh-----------cccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 700 ---------------DCIFARVGAGDCQLR-----------GVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 700 ---------------d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
...+...++.+.+.. +...+|++++|...+.+ .+.+|+++||||||+|+|+..
T Consensus 436 ni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp HHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 233344444433322 23567777766655554 478999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+ ...++.+.+ |+++|++||+++....+|+
T Consensus 516 ~~~i-~~~l~~~~~--~~tvi~itH~~~~~~~~d~ 547 (582)
T 3b60_A 516 ERAI-QAALDELQK--NRTSLVIAHRLSTIEQADE 547 (582)
T ss_dssp HHHH-HHHHHHHHT--TSEEEEECSCGGGTTTCSE
T ss_pred HHHH-HHHHHHHhC--CCEEEEEeccHHHHHhCCE
Confidence 8888 666666653 8999999999887666665
No 58
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.55 E-value=2.8e-14 Score=170.63 Aligned_cols=141 Identities=15% Similarity=0.123 Sum_probs=98.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---------------------hhhccccccccccc--chHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDRAS--ISVR 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------laq~g~~vp~~~~~--~~~~ 699 (938)
..+.++++|++++|++++|+|||||||||++|.++++.- ..++ .+||++..- -++.
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~tv~ 434 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI-SAVPQETVLFSGTIK 434 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE-EEECSSCCCCSEEHH
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe-EEECCCCcCcCccHH
Confidence 467889999999999999999999999999999875421 1222 356655321 1222
Q ss_pred HHH---------------HHhcCCchh-----------hhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 700 DCI---------------FARVGAGDC-----------QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 700 d~i---------------~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
+.+ ....++.+. +..+...+|++++|...+.+ .+.+|+++||||||+|+|+..
T Consensus 435 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 435 ENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp HHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 222 222222222 22333567777766655555 478999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+ ...++.+. .|+++|++||+.+....+|+
T Consensus 515 ~~~i-~~~l~~~~--~~~tvi~itH~l~~~~~~d~ 546 (587)
T 3qf4_A 515 EKRI-LDGLKRYT--KGCTTFIITQKIPTALLADK 546 (587)
T ss_dssp HHHH-HHHHHHHS--TTCEEEEEESCHHHHTTSSE
T ss_pred HHHH-HHHHHHhC--CCCEEEEEecChHHHHhCCE
Confidence 8888 55556554 48999999999988777766
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.55 E-value=1.6e-14 Score=178.07 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=106.9
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh-----hhc-cccccccc----ccch--------------H
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----AQV-GSFVPCDR----ASIS--------------V 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-----aq~-g~~vp~~~----~~~~--------------~ 698 (938)
..+.++++|++..|++++|+||||||||||||+++.-.+. ... -.|++... ..++ .
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~ 527 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA 527 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHH
Confidence 4577899999999999999999999999999999731110 000 02344321 1111 2
Q ss_pred HHHHHHhcCCc-hhhhhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 699 RDCIFARVGAG-DCQLRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 699 ~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
+..++..+|.. +...+..+++|+++++...+.+. +.+|+++||||||+|||+.....+ ..++.. .|.++|++|
T Consensus 528 v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l-~~~L~~----~g~tvIivS 602 (986)
T 2iw3_A 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL-VNYLNT----CGITSITIS 602 (986)
T ss_dssp HHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH-HHHHHH----SCSEEEEEC
T ss_pred HHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH-HHHHHh----CCCEEEEEE
Confidence 34567778884 56677788899888777666654 789999999999999999877776 444443 489999999
Q ss_pred CChHHH-HHhhhcccccccccccceeEEEE
Q 002306 777 HFHELT-ALAHENANEFNTKQMVGVANYHV 805 (938)
Q Consensus 777 H~~el~-~~~~~~~~~~~~~~~~~v~~~~~ 805 (938)
|+.++. .++++ ...+.++++
T Consensus 603 Hdl~~l~~~adr---------ii~L~~G~i 623 (986)
T 2iw3_A 603 HDSVFLDNVCEY---------IINYEGLKL 623 (986)
T ss_dssp SCHHHHHHHCSE---------EEEEETTEE
T ss_pred CCHHHHHHhCCE---------EEEEECCee
Confidence 998765 57777 555555555
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.54 E-value=1e-14 Score=177.44 Aligned_cols=82 Identities=21% Similarity=0.165 Sum_probs=63.0
Q ss_pred HhcCCch-hhhhcccchHHHHHHHHHHHHh-CCC---CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 704 ARVGAGD-CQLRGVSTFMQEMLETASILKG-ATD---RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 704 ~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~~---~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
..+|..+ ......+++|++++|...|.++ +.+ |+++||||||+|+|+.....+ +.++..+.+ .|.++|++|||
T Consensus 528 ~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i-~~~l~~l~~-~g~tvi~vtHd 605 (670)
T 3ux8_A 528 YDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL-LDVLHRLVD-NGDTVLVIEHN 605 (670)
T ss_dssp HHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHH-HHHHHHHHH-TTCEEEEECCC
T ss_pred HHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeCC
Confidence 3445432 2345567888888877666665 333 579999999999999999998 777888876 59999999999
Q ss_pred hHHHHHhhh
Q 002306 779 HELTALAHE 787 (938)
Q Consensus 779 ~el~~~~~~ 787 (938)
++++..|++
T Consensus 606 ~~~~~~~d~ 614 (670)
T 3ux8_A 606 LDVIKTADY 614 (670)
T ss_dssp HHHHTTCSE
T ss_pred HHHHHhCCE
Confidence 988777766
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.45 E-value=2e-13 Score=168.26 Aligned_cols=84 Identities=20% Similarity=0.180 Sum_probs=64.8
Q ss_pred HHHhcCCch-hhhhcccchHHHHHHHHHHHHh-C---CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 702 IFARVGAGD-CQLRGVSTFMQEMLETASILKG-A---TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 702 i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a---~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
++..+|+.. .+....+++|++++|...+.+. + ++|.|+||||||+|||+.+...+ ..++..+.+ .|.++|++|
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L-~~lL~~L~~-~G~TVIvI~ 865 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKL-VEVLHRLVD-RGNTVIVIE 865 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHH-HHHHHHHHH-TTCEEEEEC
T ss_pred HHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEe
Confidence 445566543 2345667888888777666655 3 34689999999999999999988 778888876 599999999
Q ss_pred CChHHHHHhhh
Q 002306 777 HFHELTALAHE 787 (938)
Q Consensus 777 H~~el~~~~~~ 787 (938)
|++++...|++
T Consensus 866 HdL~~i~~ADr 876 (916)
T 3pih_A 866 HNLDVIKNADH 876 (916)
T ss_dssp CCHHHHTTCSE
T ss_pred CCHHHHHhCCE
Confidence 99988776766
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.44 E-value=1.8e-13 Score=167.27 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=66.6
Q ss_pred HHHHhcCCch-hhhhcccchHHHHHHHHHHHHh-CCC---CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEE
Q 002306 701 CIFARVGAGD-CQLRGVSTFMQEMLETASILKG-ATD---RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775 (938)
Q Consensus 701 ~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~~---~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~ 775 (938)
.++.++|+.. .+....+++|++++|...+.+. +.+ |.|+||||||+|+|+.+...+ +.++..+.+ .|.++|++
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l-~~lL~~L~~-~G~tVIvi 789 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERL-QRQLVKLVD-AGNTVIAV 789 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHH-HHHHHHHHH-TTCEEEEE
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEE
Confidence 3455566554 3456678888888877777665 443 799999999999999999998 778888876 59999999
Q ss_pred eCChHHHHHhhh
Q 002306 776 THFHELTALAHE 787 (938)
Q Consensus 776 TH~~el~~~~~~ 787 (938)
||++++...|++
T Consensus 790 sHdl~~i~~aDr 801 (842)
T 2vf7_A 790 EHKMQVVAASDW 801 (842)
T ss_dssp CCCHHHHTTCSE
T ss_pred cCCHHHHHhCCE
Confidence 999988776665
No 63
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.44 E-value=3.5e-14 Score=174.99 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=61.3
Q ss_pred HHHHHhcCCchh--hhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 700 DCIFARVGAGDC--QLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 700 d~i~~~~~~~d~--~~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
..++.++|+.+. .....+++|+++++...+.+ .+.+|.++||||||+|+|+.....+ .+.+.+ .+.++|++|
T Consensus 881 ~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L----~~~L~~-~g~tVIiIS 955 (986)
T 2iw3_A 881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKE-FEGGVIIIT 955 (986)
T ss_dssp HHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHH----HHHHHS-CSSEEEEEC
T ss_pred HHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH----HHHHHH-hCCEEEEEE
Confidence 456677787653 35567788877777655555 5889999999999999999765554 444454 467999999
Q ss_pred CChHHH-HHhhh
Q 002306 777 HFHELT-ALAHE 787 (938)
Q Consensus 777 H~~el~-~~~~~ 787 (938)
|+.++. .+|++
T Consensus 956 HD~e~v~~l~Dr 967 (986)
T 2iw3_A 956 HSAEFTKNLTEE 967 (986)
T ss_dssp SCHHHHTTTCCE
T ss_pred CCHHHHHHhCCE
Confidence 998876 46665
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.44 E-value=3.5e-13 Score=165.38 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=65.7
Q ss_pred HHHHhcCCch-hhhhcccchHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEE
Q 002306 701 CIFARVGAGD-CQLRGVSTFMQEMLETASILKG-AT---DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775 (938)
Q Consensus 701 ~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~---~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~ 775 (938)
.++.++|+.. .+....+++|++++|...+.+. +. +|.|+||||||+|+|+.+...+ +.++..+.+ .|.++|++
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l-~~lL~~L~~-~G~TVIvi 922 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKL-LNVINGLVD-KGNTVIVI 922 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHH-HHHHHHHHH-TTCEEEEE
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEE
Confidence 3455666655 4566678888877776665554 43 3699999999999999999888 777788876 69999999
Q ss_pred eCChHHHHHhhh
Q 002306 776 THFHELTALAHE 787 (938)
Q Consensus 776 TH~~el~~~~~~ 787 (938)
||++++...|++
T Consensus 923 sHdl~~i~~aDr 934 (993)
T 2ygr_A 923 EHNLDVIKTSDW 934 (993)
T ss_dssp CCCHHHHTTCSE
T ss_pred cCCHHHHHhCCE
Confidence 999988766665
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.43 E-value=2.2e-13 Score=166.63 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=66.1
Q ss_pred HHHHhcCCch-hhhhcccchHHHHHHHHHHHHh-CC---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEE
Q 002306 701 CIFARVGAGD-CQLRGVSTFMQEMLETASILKG-AT---DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFA 775 (938)
Q Consensus 701 ~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~---~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~ 775 (938)
.++.++|+.. .+....+++|++++|...+.+. +. +|+|+||||||+|+|+.+...+ +.++..+.+ .|.++|++
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l-~~lL~~L~~-~G~TVIvi 904 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL-LDVLHRLVD-NGDTVLVI 904 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHH-HHHHHHHHH-TTCEEEEE
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEE
Confidence 3455667655 4566678888877776665554 43 3699999999999999999888 777888876 69999999
Q ss_pred eCChHHHHHhhh
Q 002306 776 THFHELTALAHE 787 (938)
Q Consensus 776 TH~~el~~~~~~ 787 (938)
||++++...+++
T Consensus 905 sHdl~~i~~aDr 916 (972)
T 2r6f_A 905 EHNLDVIKTADY 916 (972)
T ss_dssp CCCHHHHTTCSE
T ss_pred cCCHHHHHhCCE
Confidence 999988766665
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.38 E-value=5.3e-13 Score=150.22 Aligned_cols=71 Identities=15% Similarity=0.060 Sum_probs=56.3
Q ss_pred cccchHHHHHHHHHHHHh-C------CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 715 GVSTFMQEMLETASILKG-A------TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 715 ~~s~f~~e~~~~~~il~~-a------~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+++|+++++...+.+. + .+|+++|||||++|+|+.....+ ..++..+.+ .|.++|++||++++...+++
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~-~~~l~~l~~-~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKI-ASVLKELER-LNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHH-HHHHHGGGG-SSSEEEEEESCHHHHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHh-CCCEEEEEecchHHHHhCCE
Confidence 445778777776554333 3 69999999999999999988888 677777776 59999999999988666665
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.36 E-value=5.8e-13 Score=172.32 Aligned_cols=141 Identities=11% Similarity=-0.012 Sum_probs=96.7
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh--------------------hhhcccccccccc--cchHHH-
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDRA--SISVRD- 700 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~--------------------laq~g~~vp~~~~--~~~~~d- 700 (938)
.+.++++|++.+|++++|+|||||||||+++.++++.- +.+.-.+||++.. ..++.+
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence 68899999999999999999999999999999875421 1112235665541 111222
Q ss_pred ----------------HHHHhcCCchhh-----------hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q 002306 701 ----------------CIFARVGAGDCQ-----------LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 701 ----------------~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~ 752 (938)
....+.++.+.+ ..+-+.+|++++|...+.+ .+.+|+++||||||+|+|+..
T Consensus 1127 i~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp HTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred HhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 122222332222 1223467777766655555 478999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+ ...++.+. .|+++|++||+++....||+
T Consensus 1207 ~~~i-~~~l~~~~--~~~tvi~isH~l~~i~~~dr 1238 (1284)
T 3g5u_A 1207 EKVV-QEALDKAR--EGRTCIVIAHRLSTIQNADL 1238 (1284)
T ss_dssp HHHH-HHHHHHHS--SSSCEEEECSCTTGGGSCSE
T ss_pred HHHH-HHHHHHhC--CCCEEEEEecCHHHHHcCCE
Confidence 7777 55556543 48999999999887666666
No 68
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.34 E-value=7.5e-13 Score=151.93 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=71.3
Q ss_pred hHHHHHHH-HHHHHhCCCC--cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccc
Q 002306 719 FMQEMLET-ASILKGATDR--SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTK 795 (938)
Q Consensus 719 f~~e~~~~-~~il~~a~~~--slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~ 795 (938)
+|+++++. +.++..+.+| +++|||||++|+|+.....+ ..+++.+.+ |+++|++||++++...+++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l-~~~L~~l~~--~~~vi~itH~~~~~~~~d~-------- 364 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAV-AEQLSRLAD--TRQVLVVTHLAQIAARAHH-------- 364 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHH-HHHHHHHTT--TSEEEEECSCHHHHTTCSE--------
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHhC--CCEEEEEeCcHHHHhhcCe--------
Confidence 46655554 4444445677 99999999999999988888 666666653 8999999999988776665
Q ss_pred cccceeEEEEEEEEEccCCceeeeeeecCCCCCCCchHHHHHHc-C-CCHHHHHHHHHHH
Q 002306 796 QMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFA-N-FPESVVTLAREKA 853 (938)
Q Consensus 796 ~~~~v~~~~~~~~~~~~~~~~~~~ykl~~G~~~~S~gi~vA~~a-g-~P~~vi~rA~~~~ 853 (938)
+..+.. ... ++.+.-..+...+ .--=-++|++. | +-++.++.|++.+
T Consensus 365 -i~~l~k-----~~~--~G~~~~~~~~l~~---~~~~~ei~~~~~g~~~~~~~~~a~~~~ 413 (415)
T 4aby_A 365 -HYKVEK-----QVE--DGRTVSHVRLLTG---DERLEEIARMLSGNTSEAALEHARELL 413 (415)
T ss_dssp -EEEEEE-----EEE--TTEEEEEEEECCS---HHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred -EEEEEE-----ecc--CCceEEEEEECCc---hhhHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 322211 111 3333322221111 11123567766 4 6777788887764
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.30 E-value=1.6e-12 Score=168.21 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=97.1
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh---------------------hhhccccccccccc--chHH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL---------------------MAQVGSFVPCDRAS--ISVR 699 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~---------------------laq~g~~vp~~~~~--~~~~ 699 (938)
..+.++++|++.+|++++|+|||||||||+++.+.+..- ..++ .+||++..- -++.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~ti~ 481 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII-GVVSQEPVLFATTIA 481 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE-EEECSSCCCCSSCHH
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe-EEEcCCCccCCccHH
Confidence 367889999999999999999999999999999865421 1122 356655411 1222
Q ss_pred HHH---------------HHhcCCchhh-----------hhcccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q 002306 700 DCI---------------FARVGAGDCQ-----------LRGVSTFMQEMLETASILKG-ATDRSLIIIDELGRGTSTYD 752 (938)
Q Consensus 700 d~i---------------~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-a~~~slvllDEp~~gtd~~~ 752 (938)
++| ....++.+.+ ..+-+.+|++++|...|.++ +.+|+++||||||+++|+..
T Consensus 482 eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~ 561 (1284)
T 3g5u_A 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561 (1284)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 222 2222222221 22234678777776665554 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 753 GFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 753 ~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+ ...++.+. .|+++|++||+.+....+|+
T Consensus 562 ~~~i-~~~l~~~~--~~~t~i~itH~l~~i~~~d~ 593 (1284)
T 3g5u_A 562 EAVV-QAALDKAR--EGRTTIVIAHRLSTVRNADV 593 (1284)
T ss_dssp HHHH-HHHHHHHH--TTSEEEEECSCHHHHTTCSE
T ss_pred HHHH-HHHHHHHc--CCCEEEEEecCHHHHHcCCE
Confidence 6665 56666554 38999999999887766665
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.29 E-value=1.3e-12 Score=131.68 Aligned_cols=125 Identities=18% Similarity=0.051 Sum_probs=73.8
Q ss_pred EEEEEecCCCCchhhhhhhhhhHhhhhcccccccc-----cccchHH-------HHHHHhcCCc--hhhhhcccchHHHH
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD-----RASISVR-------DCIFARVGAG--DCQLRGVSTFMQEM 723 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~-----~~~~~~~-------d~i~~~~~~~--d~~~~~~s~f~~e~ 723 (938)
.++|+||||||||||+|.+++..-..-.|...... ...+++. +.++.+++.. +........+++++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 57899999999999999998764211112111000 0000000 0111111111 12334456788888
Q ss_pred HHHHHHHH------hCCCCcEEEEeC--CCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeC---ChHHH-HHhhh
Q 002306 724 LETASILK------GATDRSLIIIDE--LGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH---FHELT-ALAHE 787 (938)
Q Consensus 724 ~~~~~il~------~a~~~slvllDE--p~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH---~~el~-~~~~~ 787 (938)
++...+++ .+.+|+++|||| |++++|+.....+ .+.+.+ .+.++|++|| +.++. .++++
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l----~~~l~~-~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV----RQIMHD-PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH----HHHHTC-TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH----HHHHhc-CCCeEEEEEccCCCchHHHHHHhc
Confidence 77666655 378999999999 9999998755554 333433 5777888886 55554 35543
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.27 E-value=2.2e-11 Score=158.05 Aligned_cols=154 Identities=14% Similarity=0.056 Sum_probs=105.2
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH---------------------hhhhcccccccccc--cchH
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------LMAQVGSFVPCDRA--SISV 698 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------~laq~g~~vp~~~~--~~~~ 698 (938)
+.++.+|++|++++|+.++|+||+||||||+++.+.+.. +..++ .|||++.. .-++
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i-~~v~Q~~~Lf~~TI 508 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV-AVVSQEPALFNCTI 508 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE-EEECSSCCCCSEEH
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc-cccCCcceeeCCch
Confidence 357889999999999999999999999999999986431 11223 36666542 1122
Q ss_pred HHHH---------------HHhcCCchhhh-----------hcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChh
Q 002306 699 RDCI---------------FARVGAGDCQL-----------RGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTY 751 (938)
Q Consensus 699 ~d~i---------------~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~ 751 (938)
.++| ....++.+.+. .+-..+|++++|...+. +...+|+++||||||+++|+.
T Consensus 509 ~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~ 588 (1321)
T 4f4c_A 509 EENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 588 (1321)
T ss_dssp HHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT
T ss_pred hHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH
Confidence 2222 22223333222 12245666666554444 458899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhhcccccccccccceeEEEEEEE
Q 002306 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (938)
Q Consensus 752 ~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (938)
....+ ...+..+.+ |+|+|++||.......||+ ...+.++++...
T Consensus 589 te~~i-~~~l~~~~~--~~T~iiiaHrls~i~~aD~---------Iivl~~G~ive~ 633 (1321)
T 4f4c_A 589 SEGIV-QQALDKAAK--GRTTIIIAHRLSTIRNADL---------IISCKNGQVVEV 633 (1321)
T ss_dssp THHHH-HHHHHHHHT--TSEEEEECSCTTTTTTCSE---------EEEEETTEEEEE
T ss_pred HHHHH-HHHHHHHhC--CCEEEEEcccHHHHHhCCE---------EEEeeCCeeecc
Confidence 76655 555666654 8999999999888777777 555666666543
No 72
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.27 E-value=7.2e-13 Score=136.96 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=64.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc------------------ccccccc-ccc-hHHHHHHHhcCC---ch
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG------------------SFVPCDR-ASI-SVRDCIFARVGA---GD 710 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g------------------~~vp~~~-~~~-~~~d~i~~~~~~---~d 710 (938)
.+|++++|+||||||||||||+++++ ... -| .|+|+.. ..+ ......+..+.. .+
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~-~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~ 97 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ-SKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPE 97 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHH-TTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCc-CCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHH
Confidence 56899999999999999999999987 321 12 2333321 001 110001111110 00
Q ss_pred hhhhccc-chHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 711 CQLRGVS-TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 711 ~~~~~~s-~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
.+..-.. .+ ++.++++.+...+.+|+++|||||++| ....+ +.++..+ + .|+++| +||+.+..+
T Consensus 98 ~~~~~l~~gl-Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l-~~~l~~l-~-~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 98 VIPKLMEAGI-VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM-KMFLTRL-G-FGSKMV-VTGDITQVD 162 (208)
T ss_dssp HHHHHHHTTS-EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH-HHHHTTB-C-TTCEEE-EEEC-----
T ss_pred HHHHHHHhCC-chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH-HHHHHHh-c-CCCEEE-EECCHHHHh
Confidence 0000000 01 333444445555789999999999999 34444 5555555 3 588899 999987654
No 73
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.22 E-value=1e-11 Score=131.82 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=71.2
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHh-h-hhcccccccccccchHHHHHHHhcCCc-hh------------hhh--
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNIL-M-AQVGSFVPCDRASISVRDCIFARVGAG-DC------------QLR-- 714 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~-l-aq~g~~vp~~~~~~~~~d~i~~~~~~~-d~------------~~~-- 714 (938)
.+.+|++++|+||||||||||+++++.... . ...+.++..+... ........++|.. +. ...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA-RDLRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCH-HHHHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 457899999999999999999999984333 2 2222233222111 0111112222211 00 000
Q ss_pred ---------cccch-HHHH-HHHHHHHHhCCCCcEEEEeCCCCCCC----hhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 715 ---------GVSTF-MQEM-LETASILKGATDRSLIIIDELGRGTS----TYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 715 ---------~~s~f-~~e~-~~~~~il~~a~~~slvllDEp~~gtd----~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
..+.. ..+. .++...+ ...+|+++++|||++++| +.........+++.+.+ .|+++|++||+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~ 182 (251)
T 2ehv_A 105 GLPSEEKFVLEDRFNVDNFLRYIYRVV-KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAP 182 (251)
T ss_dssp -------------CCHHHHHHHHHHHH-HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC
T ss_pred ccccccceeccCcccHHHHHHHHHHHH-HhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCC
Confidence 00000 1111 1122222 246899999999999986 34455544888888876 599999999997
Q ss_pred HHH
Q 002306 780 ELT 782 (938)
Q Consensus 780 el~ 782 (938)
+..
T Consensus 183 ~~~ 185 (251)
T 2ehv_A 183 DPQ 185 (251)
T ss_dssp ---
T ss_pred CCC
Confidence 665
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.22 E-value=1.4e-11 Score=136.39 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=53.5
Q ss_pred ccchHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 716 VSTFMQEMLETASILKG-A----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 716 ~s~f~~e~~~~~~il~~-a----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+.+|+++++...+++. + .+|+++|||||++|+|+.....+ ..++..+. .|.++|++||+.++...+++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l-~~~l~~~~--~~~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERF-KRLLKENS--KHTQFIVITHNKIVMEAADL 290 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHH-HHHHHHHT--TTSEEEEECCCTTGGGGCSE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEECCHHHHhhCce
Confidence 45677777776666554 2 57899999999999999988888 66666664 37899999999876666664
No 75
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.5e-12 Score=148.37 Aligned_cols=126 Identities=10% Similarity=0.054 Sum_probs=80.2
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-------------ccccccccccc------chHHHHH-----
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------------VGSFVPCDRAS------ISVRDCI----- 702 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-------------~g~~vp~~~~~------~~~~d~i----- 702 (938)
.+++|.+..|++++|+||||||||||+|+++++..... .-.++|....- +.+.+.+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~ 208 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSL 208 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhccccc
Confidence 36888888999999999999999999999987643211 11244443310 1111111
Q ss_pred -------------HHhcCCchhhhhcccchHHHHHH-HHHHHH--hCCCCcE----EEEeC-CCCCCChhhHHHHHHHHH
Q 002306 703 -------------FARVGAGDCQLRGVSTFMQEMLE-TASILK--GATDRSL----IIIDE-LGRGTSTYDGFGLAWAIC 761 (938)
Q Consensus 703 -------------~~~~~~~d~~~~~~s~f~~e~~~-~~~il~--~a~~~sl----vllDE-p~~gtd~~~~~~i~~~il 761 (938)
+..+|..+... ...+++++++ ++.+.. .+.+|++ +|||| |++|+|+. ... +.
T Consensus 209 ~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~--~~~---l~ 281 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN--LAE---LH 281 (460)
T ss_dssp BSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS--CHH---HH
T ss_pred ccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh--HHH---HH
Confidence 12223322222 4566666555 444444 5789999 99999 99999997 222 22
Q ss_pred HHHHhcCCCeEEEEeCChH
Q 002306 762 EHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~e 780 (938)
+.+.+ .+.+++++||+++
T Consensus 282 ~l~~~-~~~tviiVth~~~ 299 (460)
T 2npi_A 282 HIIEK-LNVNIMLVLCSET 299 (460)
T ss_dssp HHHHH-TTCCEEEEECCSS
T ss_pred HHHHH-hCCCEEEEEccCc
Confidence 22333 5788999999977
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.19 E-value=8.4e-13 Score=136.60 Aligned_cols=53 Identities=11% Similarity=-0.149 Sum_probs=40.6
Q ss_pred CCCcEEEEeCCCCCC----ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH-HHhhh
Q 002306 734 TDRSLIIIDELGRGT----STYDGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHE 787 (938)
Q Consensus 734 ~~~slvllDEp~~gt----d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~-~~~~~ 787 (938)
.+|++++||||++|+ |+.....+ +.+++.+.++.|.++|++||+++.+ .++++
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l-~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRL-DTARIELAAQGDFDKVVVNRRLESACAELVS 197 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHH-HHHHHHHHGGGGSSEEEECSSHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHhhhccCcEEEECCCHHHHHHHHHH
Confidence 478888999999998 55555666 6667777654589999999998765 57776
No 77
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.16 E-value=1.4e-11 Score=159.87 Aligned_cols=141 Identities=11% Similarity=0.008 Sum_probs=96.3
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH---------------------hhhhccccccccccc--chH-
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI---------------------LMAQVGSFVPCDRAS--ISV- 698 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~---------------------~laq~g~~vp~~~~~--~~~- 698 (938)
..|.++++|++++|+.++|+||+||||||+++.+..+. +..++ ++||++..- -++
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i-~~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI-AIVSQEPTLFDCSIA 1170 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE-EEECSSCCCCSEEHH
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe-EEECCCCEeeCccHH
Confidence 46888999999999999999999999999999986432 11222 366665421 111
Q ss_pred ----------------HHHHHHhcCCchhh-----------hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 002306 699 ----------------RDCIFARVGAGDCQ-----------LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTST 750 (938)
Q Consensus 699 ----------------~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~ 750 (938)
+.+.+...++.+.+ ..+-+.+|++++|+..+.| ...+|+++||||||+++|+
T Consensus 1171 eNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1171 ENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250 (1321)
T ss_dssp HHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS
T ss_pred HHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH
Confidence 11223334443322 2222457777766655555 4789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 751 YDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 751 ~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..-..| ...++.+. .++|+|++||-+.-...+|+
T Consensus 1251 ~tE~~I-q~~l~~~~--~~~TvI~IAHRLsTi~~aD~ 1284 (1321)
T 4f4c_A 1251 ESEKVV-QEALDRAR--EGRTCIVIAHRLNTVMNADC 1284 (1321)
T ss_dssp HHHHHH-HHHHTTTS--SSSEEEEECSSSSTTTTCSE
T ss_pred HHHHHH-HHHHHHHc--CCCEEEEeccCHHHHHhCCE
Confidence 766665 44444443 48999999999876666666
No 78
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.13 E-value=1.1e-10 Score=130.20 Aligned_cols=70 Identities=21% Similarity=0.121 Sum_probs=53.1
Q ss_pred ccchHHHHHHH-------HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 716 VSTFMQEMLET-------ASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 716 ~s~f~~e~~~~-------~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.+.+|+++++. +.+...+.+|+++|||||++|+|+.....+ ..+++.+.. .|.++|++||+.++...+++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l-~~~l~~~~~-~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL-ITIMERYLK-KIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHH-HHHHHHTGG-GSSEEEEEESCGGGGGGCSE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEEChHHHHHhCCE
Confidence 45677777763 333334678999999999999999988888 666776665 47899999999877666554
No 79
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.10 E-value=1.3e-10 Score=127.06 Aligned_cols=134 Identities=14% Similarity=0.073 Sum_probs=75.8
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhc--ccccccccccchHHHHHHHhc-CCc------------
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV--GSFVPCDRASISVRDCIFARV-GAG------------ 709 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~--g~~vp~~~~~~~~~d~i~~~~-~~~------------ 709 (938)
+.+++++++.+|++++|+||||+|||||+++++......+. ..|+..+...-.+..++.... +..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~ 103 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREII 103 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCC
Confidence 45577788899999999999999999999999876544321 112211110000111111100 000
Q ss_pred ---------h------h--hhhc-ccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCC------Ch-hhHHHHHHHHHHHH
Q 002306 710 ---------D------C--QLRG-VSTFMQEMLETASILKGATDRSLIIIDELGRGT------ST-YDGFGLAWAICEHL 764 (938)
Q Consensus 710 ---------d------~--~~~~-~s~f~~e~~~~~~il~~a~~~slvllDEp~~gt------d~-~~~~~i~~~il~~l 764 (938)
+ . +... ...-..++++.+.++..+.+|++||+|||+..+ |+ .....+ ...++.+
T Consensus 104 ~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i-~~~L~~l 182 (296)
T 1cr0_A 104 ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNL-MTKLKGF 182 (296)
T ss_dssp HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHH-HHHHHHH
Confidence 0 0 0000 111234555555555567899999999999943 33 222344 4556666
Q ss_pred HhcCCCeEEEEeCCh
Q 002306 765 VEEIRAPTLFATHFH 779 (938)
Q Consensus 765 ~~~~~~~~l~~TH~~ 779 (938)
+++.|+++|++||+.
T Consensus 183 a~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 183 AKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHCCEEEEEEECC
T ss_pred HHHhCCeEEEEEecC
Confidence 654699999999995
No 80
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.05 E-value=4.6e-10 Score=117.36 Aligned_cols=131 Identities=10% Similarity=0.037 Sum_probs=72.3
Q ss_pred CCccc-cCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc-cccccccccchHHHHHHHhcCCch-hhhh-c-------
Q 002306 647 NDCKL-IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG-SFVPCDRASISVRDCIFARVGAGD-CQLR-G------- 715 (938)
Q Consensus 647 n~~~l-~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g-~~vp~~~~~~~~~d~i~~~~~~~d-~~~~-~------- 715 (938)
+++.. .+.+|++++|+||||||||||+++++......... .|+..+...-.+.. .+..++..- .... .
T Consensus 13 d~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (235)
T 2w0m_A 13 DKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIR-QAKQFNWDFEEYIEKKLIIIDAL 91 (235)
T ss_dssp HGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHH-HHHHTTCCCGGGBTTTEEEEECC
T ss_pred HHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHH-HHHHhcchHHHHhhCCEEEEecc
Confidence 34444 45688999999999999999999998654332211 22222221111111 122333210 0000 0
Q ss_pred ---------ccchH-HHHHHHHHHHHhCCCCc--EEEEeCCCCCC--ChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 716 ---------VSTFM-QEMLETASILKGATDRS--LIIIDELGRGT--STYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 716 ---------~s~f~-~e~~~~~~il~~a~~~s--lvllDEp~~gt--d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
....+ .++.+....+....+|+ ++++|||++++ |+.....+ ...+..++++.|+++|++||+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~-~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 92 MKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKI-SYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp C----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHH-HHHHHHHHHHTTEEEEEEEC--
T ss_pred ccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHH-HHHHHHHHHhCCCeEEEEeccC
Confidence 00011 22222222221234788 99999999777 98777777 4455555544799999999997
No 81
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.03 E-value=1.7e-10 Score=120.66 Aligned_cols=127 Identities=9% Similarity=0.037 Sum_probs=70.3
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-c------ccccccccc-cchHHHHHHHhcCCch-----hhhhcccch
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-V------GSFVPCDRA-SISVRDCIFARVGAGD-----CQLRGVSTF 719 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-~------g~~vp~~~~-~~~~~d~i~~~~~~~d-----~~~~~~s~f 719 (938)
+.+|++++|+||||||||||+++++....... . ..++..+.. ....+..++..++... ++.......
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 101 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCC
Confidence 46799999999999999999999987543311 1 122222221 1112334455555432 111111111
Q ss_pred HHHH----HHHHHHHHh----CCCCcEEEEeCCCCCCChhh------H------HHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 720 MQEM----LETASILKG----ATDRSLIIIDELGRGTSTYD------G------FGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 720 ~~e~----~~~~~il~~----a~~~slvllDEp~~gtd~~~------~------~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
..+. .++..++.. ..+|+++++|||++++|+.. + ..+...+ ..++++.|+++|++||..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l-~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 102 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL-HRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH-HHHHHHHTCEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH-HHHHHHCCCeEEEEeecc
Confidence 1111 122222221 45899999999999988731 1 1443333 334433699999999975
Q ss_pred H
Q 002306 780 E 780 (938)
Q Consensus 780 e 780 (938)
+
T Consensus 181 ~ 181 (231)
T 4a74_A 181 A 181 (231)
T ss_dssp -
T ss_pred c
Confidence 4
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.02 E-value=1.8e-10 Score=116.12 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=66.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc---cccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g---~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il 730 (938)
..|+.++|+||||+||||++++++...... .| .++.... ..+.+...+ ..+... .++
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~~~~~~~~~----~~~~~~~~~------~~~~~~---------~~~ 95 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIRGYFFDTKD----LIFRLKHLM------DEGKDT---------KFL 95 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCCCCEEEHHH----HHHHHHHHH------HHTCCS---------HHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCeEEEEEHHH----HHHHHHHHh------cCchHH---------HHH
Confidence 468899999999999999999998754322 22 1222110 111111110 000000 122
Q ss_pred HhCCCCcEEEEeCCCC-CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 731 KGATDRSLIIIDELGR-GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 731 ~~a~~~slvllDEp~~-gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
....++++++||||+. ++|+.....+ ..+++...+ .|+++|++||+.
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l-~~ll~~~~~-~~~~ii~tsn~~ 143 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELI-SYIITYRYN-NLKSTIITTNYS 143 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHH-HHHHHHHHH-TTCEEEEECCCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHH-HHHHHHHHH-cCCCEEEEcCCC
Confidence 2234789999999995 8998766665 778877765 589999999984
No 83
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.01 E-value=3.7e-10 Score=122.26 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=73.2
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh----------h-cccccccccccchHHHHH---------------HHhc
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------Q-VGSFVPCDRASISVRDCI---------------FARV 706 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la----------q-~g~~vp~~~~~~~~~d~i---------------~~~~ 706 (938)
+..|++++|+||||+|||||+++++...... + ...|+..+...-.+..++ +..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 3578999999999999999999998743321 0 112344333211111111 1222
Q ss_pred CCchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCC--CCChhhH---HHHHHHHHHHHHhcCCCeEEEEeCChHH
Q 002306 707 GAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGR--GTSTYDG---FGLAWAICEHLVEEIRAPTLFATHFHEL 781 (938)
Q Consensus 707 ~~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~--gtd~~~~---~~i~~~il~~l~~~~~~~~l~~TH~~el 781 (938)
+..+........++.++.+... ..+.++++||+|||++ ++|+.+. ..+ ...+..++++.|+++|++||+...
T Consensus 107 ~l~~~~~~~~~~ls~g~~~~i~--~l~~~~~livlDe~~~~~~~d~~~~~~~~~~-~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEWFDGLK--RAAEGRRLMVLDTLRRFHIEEENASGPMAQV-IGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp EECCCTTSCCCTTSHHHHHHHH--HHHTTCSEEEEECGGGGCCSCTTCHHHHHHH-HHHHHHHHHHHCCEEEEEEEC---
T ss_pred EEeecCCCCcccCCHHHHHHHH--HhcCCCCEEEECCHHHhcCCCcCchHHHHHH-HHHHHHHHHHcCCEEEEEecCCCc
Confidence 2222122223444455444332 3345799999999999 9988544 444 445555554469999999999765
Q ss_pred H
Q 002306 782 T 782 (938)
Q Consensus 782 ~ 782 (938)
.
T Consensus 184 ~ 184 (279)
T 1nlf_A 184 A 184 (279)
T ss_dssp -
T ss_pred c
Confidence 4
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.98 E-value=4e-11 Score=135.92 Aligned_cols=143 Identities=15% Similarity=0.012 Sum_probs=87.9
Q ss_pred cccCCccccCCCCe--------------------EEEEEecCCCCchhhhhhhhhhHhhhhc-----c------cccccc
Q 002306 644 FIPNDCKLIRGKSW--------------------FQIITGPNMGGKSTFIRQVGVNILMAQV-----G------SFVPCD 692 (938)
Q Consensus 644 ~v~n~~~l~~~~~~--------------------~~~itGpNg~GKSTllr~i~~~~~laq~-----g------~~vp~~ 692 (938)
.+.+++++++.+|+ +++|+||||||||||||+++++...... | .+++..
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 45668888888888 9999999999999999999764321110 0 122221
Q ss_pred c--cc--------c----hHHHHHHHhcCCchhhh-hcccch--HHHHHHHHHHHHh--------CCCCcEEEEeCCCCC
Q 002306 693 R--AS--------I----SVRDCIFARVGAGDCQL-RGVSTF--MQEMLETASILKG--------ATDRSLIIIDELGRG 747 (938)
Q Consensus 693 ~--~~--------~----~~~d~i~~~~~~~d~~~-~~~s~f--~~e~~~~~~il~~--------a~~~slvllDEp~~g 747 (938)
. .. + ..++.++.+++..+... ...|.- +.....++.++.. .++|+++++|||++|
T Consensus 117 ~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsg 196 (413)
T 1tq4_A 117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGE 196 (413)
T ss_dssp SSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTC
T ss_pred cccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccccc
Confidence 1 00 1 12456777777654211 112222 3333333444433 248899999999999
Q ss_pred CChhhHHHHHHHHHHHHH-----hc---CCCeEEEEeCChH---HHHHhhh
Q 002306 748 TSTYDGFGLAWAICEHLV-----EE---IRAPTLFATHFHE---LTALAHE 787 (938)
Q Consensus 748 td~~~~~~i~~~il~~l~-----~~---~~~~~l~~TH~~e---l~~~~~~ 787 (938)
+|+.....+ +.++..+. +. ...+++++||+.+ +.++++.
T Consensus 197 LD~~~~~~l-~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~ 246 (413)
T 1tq4_A 197 PQTFDKEKV-LQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDK 246 (413)
T ss_dssp CTTCCHHHH-HHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHH
Confidence 999998888 55555553 21 1256788999854 5555554
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.88 E-value=2.2e-09 Score=126.71 Aligned_cols=122 Identities=11% Similarity=-0.099 Sum_probs=80.3
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc---cccccccccchHHHHHHHhcCCc----------hhhhhcccc
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCIFARVGAG----------DCQLRGVST 718 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g---~~vp~~~~~~~~~d~i~~~~~~~----------d~~~~~~s~ 718 (938)
++.+|++++|+||||+|||||+++++..... +.+ .+++.+.. ..+..+. .++|.. +-.......
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ee~~-~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYEESR-AQLLRNA-YSWGMDFEEMERQNLLKIVCAYPES 353 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSSCH-HHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGG
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEeCCH-HHHHHHH-HHcCCCHHHHHhCCCEEEEEecccc
Confidence 5578999999999999999999999876443 211 22333321 1222221 223321 111222334
Q ss_pred hHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChh-----hHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 719 FMQEMLE-TASILKGATDRSLIIIDELGRGTSTY-----DGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 719 f~~e~~~-~~~il~~a~~~slvllDEp~~gtd~~-----~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
+++++++ ++.+...+.+|+++|+| |++|+|+. ....+ +.++..+.+ .|+++|++||+.
T Consensus 354 LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i-~~ll~~l~~-~g~tvilvsh~~ 417 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV-IGVTGYAKQ-EEITGLFTNTSD 417 (525)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH-HHHHHHHHH-TTCEEEEEEECS
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH-HHHHHHHHh-CCCEEEEEECcc
Confidence 5555544 44444457899999999 99999997 56666 778888876 699999999997
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.87 E-value=3.2e-10 Score=125.55 Aligned_cols=122 Identities=16% Similarity=-0.003 Sum_probs=72.7
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccch--HHH
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTF--MQE 722 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f--~~e 722 (938)
+++++++.+.+|++++|+|||||||||+++.++...-. ..|...-.....+. +.. .....+.+ .++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~--------~~~---~~~~i~~~~ggg~ 227 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIV--------FKH---HKNYTQLFFGGNI 227 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCC--------CSS---CSSEEEEECBTTB
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccc--------ccc---chhEEEEEeCCCh
Confidence 56778888888999999999999999999998765322 12211100000000 000 00000111 122
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 723 ~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
.++.+.+.....+|+++|+|||++. .+ +.+++.+.. .+.+++++||.......+++
T Consensus 228 ~~r~~la~aL~~~p~ilildE~~~~-------e~-~~~l~~~~~-g~~tvi~t~H~~~~~~~~dr 283 (330)
T 2pt7_A 228 TSADCLKSCLRMRPDRIILGELRSS-------EA-YDFYNVLCS-GHKGTLTTLHAGSSEEAFIR 283 (330)
T ss_dssp CHHHHHHHHTTSCCSEEEECCCCST-------HH-HHHHHHHHT-TCCCEEEEEECSSHHHHHHH
T ss_pred hHHHHHHHHhhhCCCEEEEcCCChH-------HH-HHHHHHHhc-CCCEEEEEEcccHHHHHhhh
Confidence 2333333444679999999999871 12 445666654 34579999999876666665
No 87
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.87 E-value=5.5e-09 Score=108.24 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=71.6
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccccccc-ccchHHHHHHHhcCCch-hhhh-----cccchHHHHH
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR-ASISVRDCIFARVGAGD-CQLR-----GVSTFMQEML 724 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~-~~~~~~d~i~~~~~~~d-~~~~-----~~s~f~~e~~ 724 (938)
.+..|++++|+||||+|||||+++++. ....-..|+..+. .....+..+....+... .+.. ..+.......
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 356799999999999999999999987 1111223444332 11122223334444311 1110 1122211122
Q ss_pred HHHHHHHhCC-CCcEEEEeCCCCCCChhhH-----HHHH--HHHHHHHHhcCCCeEEEEeCChH
Q 002306 725 ETASILKGAT-DRSLIIIDELGRGTSTYDG-----FGLA--WAICEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 725 ~~~~il~~a~-~~slvllDEp~~gtd~~~~-----~~i~--~~il~~l~~~~~~~~l~~TH~~e 780 (938)
.++.+...+. ++++||+|||++++|+... ..+. ...+..++++.|+++|+++|...
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 2333333444 4999999999999987432 2221 22244455446899999999853
No 88
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.86 E-value=2.9e-09 Score=113.83 Aligned_cols=117 Identities=19% Similarity=0.129 Sum_probs=70.1
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccc---------cccccccchHHHHHHHhcCCchhhhhc
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF---------VPCDRASISVRDCIFARVGAGDCQLRG 715 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~---------vp~~~~~~~~~d~i~~~~~~~d~~~~~ 715 (938)
+.++++ +.+|++++|+|||||||||+|+.++...-....|.. ++.... .++.. ..+|. .
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--~~v~q--~~~gl------~ 83 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--SIVNQ--REVGE------D 83 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--SEEEE--EEBTT------T
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--eeeeH--HHhCC------C
Confidence 445666 478999999999999999999999875433212321 111100 00000 01111 1
Q ss_pred ccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 716 ~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
..+|. ..++.+++ .+|+++|+|||+ |+... ..+++.. + .|.+++++||+.+....+++
T Consensus 84 ~~~l~---~~la~aL~--~~p~illlDEp~---D~~~~----~~~l~~~-~-~g~~vl~t~H~~~~~~~~dr 141 (261)
T 2eyu_A 84 TKSFA---DALRAALR--EDPDVIFVGEMR---DLETV----ETALRAA-E-TGHLVFGTLHTNTAIDTIHR 141 (261)
T ss_dssp BSCHH---HHHHHHHH--HCCSEEEESCCC---SHHHH----HHHHHHH-H-TTCEEEEEECCSSHHHHHHH
T ss_pred HHHHH---HHHHHHHh--hCCCEEEeCCCC---CHHHH----HHHHHHH-c-cCCEEEEEeCcchHHHHHHH
Confidence 13442 22333443 489999999998 77543 2334443 4 58999999999887666665
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.84 E-value=4.1e-09 Score=124.39 Aligned_cols=135 Identities=17% Similarity=0.057 Sum_probs=79.6
Q ss_pred ccccCCccc-cCCCCeEEEEEecCCCCchhhhhhh--hhhHhhhhcccccccccccchHHHHHHHhcCCc-hhh------
Q 002306 643 NFIPNDCKL-IRGKSWFQIITGPNMGGKSTFIRQV--GVNILMAQVGSFVPCDRASISVRDCIFARVGAG-DCQ------ 712 (938)
Q Consensus 643 ~~v~n~~~l-~~~~~~~~~itGpNg~GKSTllr~i--~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~-d~~------ 712 (938)
..+.+++++ ++.+|++++|+||||||||||++++ +++........++..+..... ......++|.. ++.
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~-~~~~~~~~g~~~q~~~~~~~l 103 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQD-IIKNARSFGWDLAKLVDEGKL 103 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH-HHHHHGGGTCCHHHHHHTTSE
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHH-HHHHHHHcCCChHHhhccCcE
Confidence 356678999 8899999999999999999999995 343322222233322211000 00111122210 000
Q ss_pred -----------hhcccchHHH--HHHHHHHHHhCCCCcEEEEeCCCCC-----CChhhHHHHHHHHHHHHHhcCCCeEEE
Q 002306 713 -----------LRGVSTFMQE--MLETASILKGATDRSLIIIDELGRG-----TSTYDGFGLAWAICEHLVEEIRAPTLF 774 (938)
Q Consensus 713 -----------~~~~s~f~~e--~~~~~~il~~a~~~slvllDEp~~g-----td~~~~~~i~~~il~~l~~~~~~~~l~ 774 (938)
..-...+..+ +.+....+. ..++.+|+||||+.. +|+.....+ +.+++.+.+ .|+++|+
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS-~g~~~~lilDe~t~~~~~~~lD~~~~~~l-~~ll~~l~~-~g~tvl~ 180 (525)
T 1tf7_A 104 FILDASPDPEGQEVVGGFDLSALIERINYAIQ-KYRARRVSIDSVTSVFQQYDASSVVRREL-FRLVARLKQ-IGATTVM 180 (525)
T ss_dssp EEEECCCCSSCCSCCSSHHHHHHHHHHHHHHH-HHTCSEEEEECSTTTSTTTCCHHHHHHHH-HHHHHHHHH-HTCEEEE
T ss_pred EEEecCcccchhhhhcccCHHHHHHHHHHHHH-HcCCCEEEECCHHHHHHhcCCHHHHHHHH-HHHHHHHHH-CCCEEEE
Confidence 0001122211 112222222 247899999999874 577777777 888888887 5999999
Q ss_pred EeCChHH
Q 002306 775 ATHFHEL 781 (938)
Q Consensus 775 ~TH~~el 781 (938)
+||+.+.
T Consensus 181 itH~~~~ 187 (525)
T 1tf7_A 181 TTERIEE 187 (525)
T ss_dssp EEECSSS
T ss_pred EecCCCC
Confidence 9999764
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.79 E-value=1e-08 Score=111.95 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=69.9
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh------------------h-------c-ccccccccc-cc---h
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------Q-------V-GSFVPCDRA-SI---S 697 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la------------------q-------~-g~~vp~~~~-~~---~ 697 (938)
+++|+..+|++++|+|||||||||+++.++...... | . -.++|+... .. .
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~ 171 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 171 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHH
Confidence 456666789999999999999999999997653210 0 0 123333322 11 1
Q ss_pred HHHHHHH-h-cCCchhh------hhcccchHHHHHHH--HHHHHhCCCCc--EEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 002306 698 VRDCIFA-R-VGAGDCQ------LRGVSTFMQEMLET--ASILKGATDRS--LIIIDELGRGTSTYDGFGLAWAICEHLV 765 (938)
Q Consensus 698 ~~d~i~~-~-~~~~d~~------~~~~s~f~~e~~~~--~~il~~a~~~s--lvllDEp~~gtd~~~~~~i~~~il~~l~ 765 (938)
+.+.+.. . -+....+ .......+.++.+. +.+...+.+|. ++++| |++|+|+... ++.+.
T Consensus 172 v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-------~~~~~ 243 (302)
T 3b9q_A 172 LSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-------AREFN 243 (302)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-------HHHHH
T ss_pred HHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-------HHHHH
Confidence 2233221 1 1110000 00011223333322 22222357899 99999 9999998643 23455
Q ss_pred hcCCCeEEEEeCChH
Q 002306 766 EEIRAPTLFATHFHE 780 (938)
Q Consensus 766 ~~~~~~~l~~TH~~e 780 (938)
+..|.++|++||..+
T Consensus 244 ~~~g~t~iiiThlD~ 258 (302)
T 3b9q_A 244 EVVGITGLILTKLDG 258 (302)
T ss_dssp HHTCCCEEEEECCSS
T ss_pred HhcCCCEEEEeCCCC
Confidence 436899999999543
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=1e-08 Score=99.96 Aligned_cols=86 Identities=14% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhhhhcc---cccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 731 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~laq~g---~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 731 (938)
.|+.++|+||||+||||+++.++..... -| .|++.....-. .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~~~---------------------------------~ 79 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMPLT---------------------------------D 79 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSCCC---------------------------------G
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhhHH---------------------------------H
Confidence 5789999999999999999999875442 12 23332211000 1
Q ss_pred hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe-EEEEeCC
Q 002306 732 GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP-TLFATHF 778 (938)
Q Consensus 732 ~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~-~l~~TH~ 778 (938)
...++++++||||+. +++.....+ ..+++.+.+ .|.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l-~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALL-FSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHH-HHHHHHHHH-HTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHH-HHHHHHHHH-cCCcEEEEECCC
Confidence 124689999999998 555444444 778888776 4677 8889995
No 92
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.76 E-value=1.8e-08 Score=112.14 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=70.9
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-------------------------hcc-cccccccc-cc---h
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-------------------------QVG-SFVPCDRA-SI---S 697 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-------------------------q~g-~~vp~~~~-~~---~ 697 (938)
.++|+..+|++++|+|||||||||+++.++...... +.+ .++++... .. .
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 466777889999999999999999999987653210 001 23333322 11 1
Q ss_pred HHHHHHH-h-----------cCCchhhhhcccchHHHHH--HHHHHHHhCCCCc--EEEEeCCCCCCChhhHHHHHHHHH
Q 002306 698 VRDCIFA-R-----------VGAGDCQLRGVSTFMQEML--ETASILKGATDRS--LIIIDELGRGTSTYDGFGLAWAIC 761 (938)
Q Consensus 698 ~~d~i~~-~-----------~~~~d~~~~~~s~f~~e~~--~~~~il~~a~~~s--lvllDEp~~gtd~~~~~~i~~~il 761 (938)
+.+.+.. . .|..+.. ...+.++. +++.+...+.+|. +++|| |++|+|+... +
T Consensus 229 v~e~l~~~~~~~~d~~lldt~Gl~~~~----~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~-------~ 296 (359)
T 2og2_A 229 LSKAVKRGKEEGYDVVLCDTSGRLHTN----YSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-------A 296 (359)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCSSCC----HHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH-------H
T ss_pred HHHHHHHHHhCCCHHHHHHhcCCChhh----hhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH-------H
Confidence 2233221 1 1111111 12233332 2233333467899 99999 9999998643 2
Q ss_pred HHHHhcCCCeEEEEeCChH
Q 002306 762 EHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 762 ~~l~~~~~~~~l~~TH~~e 780 (938)
+.+.+..|.++|++||..+
T Consensus 297 ~~~~~~~g~t~iiiThlD~ 315 (359)
T 2og2_A 297 REFNEVVGITGLILTKLDG 315 (359)
T ss_dssp HHHHHHTCCCEEEEESCTT
T ss_pred HHHHHhcCCeEEEEecCcc
Confidence 3444446899999999643
No 93
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.73 E-value=1.5e-08 Score=113.00 Aligned_cols=129 Identities=11% Similarity=0.016 Sum_probs=73.4
Q ss_pred ccCCCCeEEEEEecCCCCchhhhhhhhhhHhhh-hc----c--ccccccccc-chHHHHHHHhcCCc-----hhhhhccc
Q 002306 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QV----G--SFVPCDRAS-ISVRDCIFARVGAG-----DCQLRGVS 717 (938)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~~~~la-q~----g--~~vp~~~~~-~~~~d~i~~~~~~~-----d~~~~~~s 717 (938)
+++..|+++.|+||||||||||+++++...... .. | .|+-.+... ...+..++.+.+.. +++.-...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 456789999999999999999999998765221 11 2 344333221 11122344444432 12211111
Q ss_pred chHHHHHHHHHH----HHhC----CCCcEEEEeCCCCCCChhh------------HHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 718 TFMQEMLETASI----LKGA----TDRSLIIIDELGRGTSTYD------------GFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 718 ~f~~e~~~~~~i----l~~a----~~~slvllDEp~~gtd~~~------------~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
.-+.++.++..+ +... .++++||+|||++++|+.. ...+ ...+..++++.++++|+++|
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~-l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH-LADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHH-HHHHHHHHHHTTCEEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHH-HHHHHHHHHHcCcEEEEEcc
Confidence 112233232222 2222 6899999999999998842 1222 23344444446999999999
Q ss_pred ChH
Q 002306 778 FHE 780 (938)
Q Consensus 778 ~~e 780 (938)
...
T Consensus 285 ~~~ 287 (349)
T 1pzn_A 285 VQA 287 (349)
T ss_dssp CC-
T ss_pred ccc
Confidence 864
No 94
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.72 E-value=2.6e-09 Score=113.31 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=24.5
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
...+.++++|++.+|.+++|+|||||||||++|.++..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999998764
No 95
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.72 E-value=1.8e-08 Score=105.96 Aligned_cols=126 Identities=10% Similarity=0.083 Sum_probs=66.6
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-------cccccccccc-cchHHHHHHHhcCCc-----hhhhhcccch
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------VGSFVPCDRA-SISVRDCIFARVGAG-----DCQLRGVSTF 719 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-------~g~~vp~~~~-~~~~~d~i~~~~~~~-----d~~~~~~s~f 719 (938)
+..|++++|+||||+|||||+++++....+.. ...|+..+.. ....+..+..++|.. +++......-
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 35789999999999999999999987543321 1123332221 111223344556543 1111110101
Q ss_pred HHHHHH----HHHHHHhCCCCcEEEEeCCCCCCChh-------h-----HHHHHHHHHHHHHhcCCCeEEEEeCChH
Q 002306 720 MQEMLE----TASILKGATDRSLIIIDELGRGTSTY-------D-----GFGLAWAICEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 720 ~~e~~~----~~~il~~a~~~slvllDEp~~gtd~~-------~-----~~~i~~~il~~l~~~~~~~~l~~TH~~e 780 (938)
..+..+ +...+. ..++++|++|||+.++|+. . ...+...+ ..++++.|+++|+++|...
T Consensus 101 ~~~~~~~~~~~~~~~~-~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l-~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMV-ESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRML-LRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp HHHHHHHHHHHHHHHH-HSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHH-HHHHHHHCCEEEEEC----
T ss_pred HHHHHHHHHHHHHHHh-cCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHH-HHHHHHcCCEEEEEeeeee
Confidence 122211 222222 2578999999999999874 1 12332333 3334336999999999754
No 96
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.71 E-value=1.1e-08 Score=114.16 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=64.2
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhhccccccccc-ccchHHHHHHHhcC-Cch-hhhhcccchHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDR-ASISVRDCIFARVG-AGD-CQLRGVSTFMQEMLETASI 729 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~-~~~~~~d~i~~~~~-~~d-~~~~~~s~f~~e~~~~~~i 729 (938)
..++.+++|+|||||||||+|++++...-....|..+-.+. ..+.. . ...+ ..+ ......-+|.. .++.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~-~---~~~~~v~q~~~~~~~~~~~~---~La~a 192 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH-E---SKKCLVNQREVHRDTLGFSE---ALRSA 192 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-C---CSSSEEEEEEBTTTBSCHHH---HHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh-h---ccccceeeeeeccccCCHHH---HHHHH
Confidence 35677999999999999999999876543322221111000 00000 0 0000 000 00111122322 22222
Q ss_pred HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 730 l~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
...+|+++++|||+ |+... ..+++ ++. .|.++|++||+.+....+++
T Consensus 193 --L~~~PdvillDEp~---d~e~~----~~~~~-~~~-~G~~vl~t~H~~~~~~~~dR 239 (356)
T 3jvv_A 193 --LREDPDIILVGEMR---DLETI----RLALT-AAE-TGHLVFGTLHTTSAAKTIDR 239 (356)
T ss_dssp --TTSCCSEEEESCCC---SHHHH----HHHHH-HHH-TTCEEEEEESCSSHHHHHHH
T ss_pred --hhhCcCEEecCCCC---CHHHH----HHHHH-HHh-cCCEEEEEEccChHHHHHHH
Confidence 35799999999997 54321 22233 344 58999999999877776666
No 97
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.66 E-value=5e-09 Score=116.56 Aligned_cols=142 Identities=11% Similarity=0.068 Sum_probs=89.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccc----------------cccc----------cccch
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF----------------VPCD----------RASIS 697 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~----------------vp~~----------~~~~~ 697 (938)
.+.+++ |.+.+|++++|+|||||||||||++++...-. ..|.+ ++.. ....+
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~ 137 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRP 137 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSC
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCC
Confidence 466778 88999999999999999999999999765311 11100 0000 00001
Q ss_pred HHHH---HHHhcCCchh----------hhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 002306 698 VRDC---IFARVGAGDC----------QLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 698 ~~d~---i~~~~~~~d~----------~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l 764 (938)
...+ .+..++..+. +....+.|+.++++++.+ +.+|.+ ++|+||.....+ +.+++.+
T Consensus 138 ~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~Gldp~~~~~l-~~ller~ 207 (347)
T 2obl_A 138 ALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RGGFPPSVFSSL-PKLLERA 207 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BTTBCHHHHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------ccCCCHHHHHHH-HHHHHHH
Confidence 1111 1111111111 013456778888666555 355544 899999887777 7888877
Q ss_pred Hh-cCCC-----eEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 765 VE-EIRA-----PTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 765 ~~-~~~~-----~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
.+ +.|. +++++|||++ ..++++ ...+.++++..
T Consensus 208 ~~~~~GsiT~~~tVl~~thdl~-~~i~d~---------v~~i~dG~Ivl 246 (347)
T 2obl_A 208 GPAPKGSITAIYTVLLESDNVN-DPIGDE---------VRSILDGHIVL 246 (347)
T ss_dssp EECSSSEEEEEEEEECCSSCCC-CHHHHH---------HHHHCSEEEEB
T ss_pred hCCCCCCeeeEEEEEEeCCCCC-Chhhhh---------eEEeeCcEEEE
Confidence 64 3577 8999999987 567777 66677887755
No 98
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.62 E-value=1.4e-09 Score=113.18 Aligned_cols=133 Identities=13% Similarity=-0.028 Sum_probs=69.3
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhc--c----------------cccccccccchHHHHHHH--
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQV--G----------------SFVPCDRASISVRDCIFA-- 704 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~--g----------------~~vp~~~~~~~~~d~i~~-- 704 (938)
-.++++|++.+|++++|+|||||||||++|.++.... ..+ | .|++... ..+.....
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYFSVSCTTRKKREKEKEGVDYYFIDK---TIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEECCCEECSCCCSSCCBTTTBEECCH---HHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEEeecccCCCCCcccccCCeEEECCH---HHHHHhhhcc
Confidence 3568999999999999999999999999999987541 111 0 0111110 01111100
Q ss_pred -----------hcCCch-----hhhhc-----ccchHHHHHHHHHH-----H-HhCCCCcEEEEeCCCCCCChhhHHHHH
Q 002306 705 -----------RVGAGD-----CQLRG-----VSTFMQEMLETASI-----L-KGATDRSLIIIDELGRGTSTYDGFGLA 757 (938)
Q Consensus 705 -----------~~~~~d-----~~~~~-----~s~f~~e~~~~~~i-----l-~~a~~~slvllDEp~~gtd~~~~~~i~ 757 (938)
..|... -+..+ ...+++++++...+ . ..+.+|++++||||++++|......|.
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~ 167 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ 167 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence 000000 00000 12345666554444 1 124578899999999999987766664
Q ss_pred HHHHHHHHhc------CCCeEEEEeCChHHH
Q 002306 758 WAICEHLVEE------IRAPTLFATHFHELT 782 (938)
Q Consensus 758 ~~il~~l~~~------~~~~~l~~TH~~el~ 782 (938)
..+. .+..+ .++..++++|+.+.+
T Consensus 168 ~~l~-~~~~~~~~~h~~~~d~iiv~~~~~ea 197 (218)
T 1z6g_A 168 KRME-QLNIELHEANLLNFNLSIINDDLTLT 197 (218)
T ss_dssp HHHH-HHHHHHHHHTTSCCSEEEECSSHHHH
T ss_pred HHHH-HHHHHHHhhcccCCCEEEECCCHHHH
Confidence 4433 22221 367889999997644
No 99
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.60 E-value=3.1e-09 Score=116.61 Aligned_cols=118 Identities=13% Similarity=0.071 Sum_probs=67.2
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh----hcccccccccccc----------------------hHHHHHHHhc
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA----QVGSFVPCDRASI----------------------SVRDCIFARV 706 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la----q~g~~vp~~~~~~----------------------~~~d~i~~~~ 706 (938)
..+|.+++|+||||||||||+|.++++.-.. ++ .+|+.+..-. ..+..++..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v-~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRV-DLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCE-EEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeE-EEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 3678999999999999999999998754321 11 2333322111 1122333333
Q ss_pred CCchhhhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH
Q 002306 707 GAGDCQLRGVSTFMQEMLETASIL-KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (938)
Q Consensus 707 ~~~d~~~~~~s~f~~e~~~~~~il-~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~ 782 (938)
+ ..........|++++++...+. ..+.+|++||+|||+.+.|+.. . .+.+..+ .+|+++|+.++.
T Consensus 166 ~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~--------~l~~~~D-~~I~V~a~~~~~ 231 (312)
T 3aez_A 166 K-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-L--------MVSDLFD-FSLYVDARIEDI 231 (312)
T ss_dssp H-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-C--------CGGGGCS-EEEEEEECHHHH
T ss_pred C-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-H--------HHHHhcC-cEEEEECCHHHH
Confidence 3 1111123345555555433222 2357899999999999998522 0 1222223 457778877653
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.52 E-value=7.1e-08 Score=93.71 Aligned_cols=73 Identities=19% Similarity=0.106 Sum_probs=55.8
Q ss_pred hhcccchHHHHHHHHHHH-------HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHh
Q 002306 713 LRGVSTFMQEMLETASIL-------KGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALA 785 (938)
Q Consensus 713 ~~~~s~f~~e~~~~~~il-------~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~ 785 (938)
....+++|+++++...+. ..+.+|+++|||||++|+|+.....+ ..++..+.+ .|.++|++||+.++..++
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~-~~~tiiivsH~~~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL-ITIMERYLK-KIPQVILVSHDEELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHH-HHHHHHTGG-GSSEEEEEESCGGGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHH-HHHHHHHHc-cCCEEEEEEChHHHHHhC
Confidence 445677888877766542 23578999999999999999888877 666676665 488999999998765565
Q ss_pred hh
Q 002306 786 HE 787 (938)
Q Consensus 786 ~~ 787 (938)
++
T Consensus 130 d~ 131 (148)
T 1f2t_B 130 DH 131 (148)
T ss_dssp SE
T ss_pred CE
Confidence 54
No 101
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.52 E-value=1.3e-08 Score=103.39 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.0
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNIL 681 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~ 681 (938)
|++++|+|||||||||+++.++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 56899999999999999999988654
No 102
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.51 E-value=7e-09 Score=111.50 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=27.5
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 737 SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 737 slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
.|++||||+.|+|+.| ..+++.+.+ . .++|++.|-.
T Consensus 115 ~lllldep~~gL~~lD-----~~~l~~L~~-~-~~vI~Vi~K~ 150 (270)
T 3sop_A 115 CLYFISPTGHSLRPLD-----LEFMKHLSK-V-VNIIPVIAKA 150 (270)
T ss_dssp EEEEECCCSSSCCHHH-----HHHHHHHHT-T-SEEEEEETTG
T ss_pred eeEEEecCCCcCCHHH-----HHHHHHHHh-c-CcEEEEEecc
Confidence 5999999999999987 345666766 3 7777777654
No 103
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.48 E-value=1.7e-09 Score=117.56 Aligned_cols=103 Identities=11% Similarity=-0.094 Sum_probs=67.4
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccc---------cch-------HHHHHHHhcC
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRA---------SIS-------VRDCIFARVG 707 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~---------~~~-------~~d~i~~~~~ 707 (938)
.+.++++|++++|++++|+||||||||||+++++++. -..+-.++|.... .+. .+...+..+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~- 191 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY- 191 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT-
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH-
Confidence 3677899999999999999999999999999998765 2233334443221 010 122233331
Q ss_pred CchhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHH
Q 002306 708 AGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGL 756 (938)
Q Consensus 708 ~~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i 756 (938)
+.+.+. ...+|+++++. +...+.+|+++| |+++|+.....+
T Consensus 192 L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 192 LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 111121 34677777766 444468899998 999999876665
No 104
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.45 E-value=7.4e-08 Score=110.43 Aligned_cols=144 Identities=13% Similarity=0.005 Sum_probs=90.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHhh----------------------------hhcccccccccc
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM----------------------------AQVGSFVPCDRA 694 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~l----------------------------aq~g~~vp~~~~ 694 (938)
..+.+++ |.+.+|++++|+|||||||||||++++...-. ...-.+++....
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~ 223 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV 223 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC
Confidence 3467788 99999999999999999999999998754210 001123443211
Q ss_pred ----cchHHHHH------HHhcCC-chhhhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q 002306 695 ----SISVRDCI------FARVGA-GDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEH 763 (938)
Q Consensus 695 ----~~~~~d~i------~~~~~~-~d~~~~~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~ 763 (938)
++...+.+ +...+. -..+....+.|+.++++++.+ +.+|.+ ++|+|+.....+ ..+++.
T Consensus 224 ~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~glD~~~~~~l-~~ll~r 293 (438)
T 2dpy_A 224 SPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGYPPSVFAKL-PALVER 293 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSCCTTHHHHH-HHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccCCHHHHHHH-HHHHHH
Confidence 11111111 111110 011222356778888666555 566665 999999888777 677777
Q ss_pred HHh---cCCC-----eEEEEeCChHHHHHhhhcccccccccccceeEEEEEE
Q 002306 764 LVE---EIRA-----PTLFATHFHELTALAHENANEFNTKQMVGVANYHVSA 807 (938)
Q Consensus 764 l~~---~~~~-----~~l~~TH~~el~~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (938)
+.+ +.|. +++++|||++ ..++++ ...+.++++..
T Consensus 294 ~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~---------v~~l~dG~Ivl 335 (438)
T 2dpy_A 294 AGNGIHGGGSITAFYTVLTEGDDQQ-DPIADS---------ARAILDGHIVL 335 (438)
T ss_dssp CSCCSTTSCEEEEEEEEECSSSCSC-CHHHHH---------HHHHSSEEEEE
T ss_pred HHhccCCCCcccceeEEEEeCCCcc-chhhce---------EEEEeCcEEEE
Confidence 654 2364 8999999987 667776 55666777654
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.44 E-value=6.4e-10 Score=114.94 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+|.+++|+|||||||||++|.++..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999875
No 106
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.42 E-value=3.1e-07 Score=103.89 Aligned_cols=125 Identities=13% Similarity=0.090 Sum_probs=69.3
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-cc------ccccccc-ccchHHHHHHHhcCCch-----hhhhcccch
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VG------SFVPCDR-ASISVRDCIFARVGAGD-----CQLRGVSTF 719 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-~g------~~vp~~~-~~~~~~d~i~~~~~~~d-----~~~~~~s~f 719 (938)
+..|++++|+||||||||||+++++....... .| .|+..+. ........+..++|... ++.......
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 45789999999999999999998865443321 11 2333222 11122334556666431 111111111
Q ss_pred HHHH----HHHHHHHHhCCCCcEEEEeCCCCCCChhhH------------HHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 720 MQEM----LETASILKGATDRSLIIIDELGRGTSTYDG------------FGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 720 ~~e~----~~~~~il~~a~~~slvllDEp~~gtd~~~~------------~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
..+. .++...+. ..++.+|++|||+..+++.-. ..+ ...+..++++.|+++|++||..
T Consensus 255 ~~~~~~~l~~~~~~l~-~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~i-l~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMS-ESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKF-MRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp HHHHHHHHHHHHHHHH-HSCEEEEEEETGGGGCC------CCHHHHHHHHHHH-HHHHHHHHHHHCCEEEEEEEC-
T ss_pred hHHHHHHHHHHHHHHH-hcCCceEEecchhhhCchhhcCccchHHHHHHHHHH-HHHHHHHHHHcCCEEEEEEeec
Confidence 1111 11222222 257899999999998886321 223 3445555555699999999984
No 107
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.38 E-value=1.4e-07 Score=98.02 Aligned_cols=112 Identities=12% Similarity=0.004 Sum_probs=59.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhh-hhccc-cc---cccc---ccc---hHHHHHHHhcCC----chhhhh-c--
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGS-FV---PCDR---ASI---SVRDCIFARVGA----GDCQLR-G-- 715 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~l-aq~g~-~v---p~~~---~~~---~~~d~i~~~~~~----~d~~~~-~-- 715 (938)
.+|++++|+||||||||||+|.++..... .-.|. .+ |... ..+ ..-...|..+.. .+++.. +
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~ 93 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY 93 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence 57899999999999999999998775431 01111 11 1110 001 111122222111 122111 0
Q ss_pred ccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHH
Q 002306 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELT 782 (938)
Q Consensus 716 ~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~ 782 (938)
..+- ..++..++ ..+.++||| +|+.....+ +.. +. .+.+++++||+.+..
T Consensus 94 yg~~---~~~v~~~l---~~G~illLD-----LD~~~~~~i-~~~---l~--~~~tI~i~th~~~~l 143 (219)
T 1s96_A 94 YGTS---REAIEQVL---ATGVDVFLD-----IDWQGAQQI-RQK---MP--HARSIFILPPSKIEL 143 (219)
T ss_dssp EEEE---HHHHHHHH---TTTCEEEEE-----CCHHHHHHH-HHH---CT--TCEEEEEECSSHHHH
T ss_pred CCCC---HHHHHHHH---hcCCeEEEE-----ECHHHHHHH-HHH---cc--CCEEEEEECCCHHHH
Confidence 0111 12233333 457999999 999766665 333 22 378999999997754
No 108
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.37 E-value=5.4e-07 Score=101.29 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=65.2
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccc-cccchHHHHHHHhcC-Cch-hhhhcccchHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD-RASISVRDCIFARVG-AGD-CQLRGVSTFMQEMLETASI 729 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~-~~~~~~~d~i~~~~~-~~d-~~~~~~s~f~~e~~~~~~i 729 (938)
..+|.+++|+|||||||||+|+.++...-...-|..+-.+ ...+.. -..++ ..+ .+.....+|.. -++.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~----~~~~~~v~Q~~~g~~~~~~~~---~l~~~ 205 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFAD---ALRAA 205 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCSHH---HHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh----ccCceEEEeeecCCCHHHHHH---HHHHH
Confidence 4678999999999999999999998754332123221100 000000 00011 000 00001234532 12222
Q ss_pred HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 730 LKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 730 l~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+ ..+|+++++|||+ |+.. + +.+++.. . .|.+++.++|..+....+++
T Consensus 206 L--~~~pd~illdE~~---d~e~---~-~~~l~~~-~-~g~~vi~t~H~~~~~~~~~r 252 (372)
T 2ewv_A 206 L--REDPDVIFVGEMR---DLET---V-ETALRAA-E-TGHLVFGTLHTNTAIDTIHR 252 (372)
T ss_dssp T--TSCCSEEEESCCC---SHHH---H-HHHHHHH-T-TTCEEEECCCCCSHHHHHHH
T ss_pred h--hhCcCEEEECCCC---CHHH---H-HHHHHHH-h-cCCEEEEEECcchHHHHHHH
Confidence 3 3589999999997 5543 2 3334443 3 58899999999776666655
No 109
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.31 E-value=4.3e-07 Score=102.03 Aligned_cols=140 Identities=13% Similarity=-0.019 Sum_probs=70.9
Q ss_pred CCccccCCC--CeEEEEEecCCCCchhhhhhhhhhHhhhhc---cc-cc------------ccccccchHHH--HHHHhc
Q 002306 647 NDCKLIRGK--SWFQIITGPNMGGKSTFIRQVGVNILMAQV---GS-FV------------PCDRASISVRD--CIFARV 706 (938)
Q Consensus 647 n~~~l~~~~--~~~~~itGpNg~GKSTllr~i~~~~~laq~---g~-~v------------p~~~~~~~~~d--~i~~~~ 706 (938)
..+++.+.+ ++.++|+||||||||||+|+++++.-.... |. ++ +.+...+.... ......
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~ 238 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAV 238 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHH
Confidence 345666677 899999999999999999999875322110 11 11 00000111111 000011
Q ss_pred CCchhhhhcccch--------HHHHHHHHHHHHh--CCCCcEEEEeC---CC------CCCChhhHHHHHHHHHHHHHhc
Q 002306 707 GAGDCQLRGVSTF--------MQEMLETASILKG--ATDRSLIIIDE---LG------RGTSTYDGFGLAWAICEHLVEE 767 (938)
Q Consensus 707 ~~~d~~~~~~s~f--------~~e~~~~~~il~~--a~~~slvllDE---p~------~gtd~~~~~~i~~~il~~l~~~ 767 (938)
...+++....... +.+.++...+.+. ..++++++||| |+ .|+|+..+.+++.++.+.+.+
T Consensus 239 t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~- 317 (365)
T 1lw7_A 239 RHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK- 317 (365)
T ss_dssp HHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG-
T ss_pred hccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH-
Confidence 1112221111000 1111111112221 25789999999 65 578999999996555444443
Q ss_pred CCCeEEEEeCChHHHHHhhh
Q 002306 768 IRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 768 ~~~~~l~~TH~~el~~~~~~ 787 (938)
.+.+++++||-.+..++++.
T Consensus 318 ~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 318 YKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp GGCCCEEEECSSHHHHHHHH
T ss_pred cCCCEEEeCCCCHHHHHHHH
Confidence 57899999987555455444
No 110
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.28 E-value=2.3e-06 Score=89.89 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=68.8
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccchHHHHHHHhcCCc-hhhh--------h-------
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAG-DCQL--------R------- 714 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~--------~------- 714 (938)
.+..|++++|+||||+|||||+.+++....... -..|+..+...-.+..+ +.++|.. +... .
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQN-MAQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHH-HHTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHH-HHHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 346789999999999999999887765433221 22333333221111111 2233321 0000 0
Q ss_pred -----------cccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCC--ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChH
Q 002306 715 -----------GVSTFMQEMLETASILKGATDRSLIIIDELGRGT--STYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 715 -----------~~s~f~~e~~~~~~il~~a~~~slvllDEp~~gt--d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~e 780 (938)
.......-..++..++.. .+++++++|+|+... |+.........+.+.+.+ .|+++++++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~-~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRD-INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAG-TGCTSIFVSQVSV 174 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHH-HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHH-TTCEEEEEEECC-
T ss_pred cccccccccccCccCHHHHHHHHHHHHHH-hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 001111112222223322 468899999999887 554455555666665555 7999999999864
No 111
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.28 E-value=1.8e-07 Score=112.09 Aligned_cols=47 Identities=9% Similarity=0.088 Sum_probs=35.2
Q ss_pred CCCcEEEEeCC------CCCCChhhHHHHHHHHHHH-HHhcCCCeEEEEeCChHH
Q 002306 734 TDRSLIIIDEL------GRGTSTYDGFGLAWAICEH-LVEEIRAPTLFATHFHEL 781 (938)
Q Consensus 734 ~~~slvllDEp------~~gtd~~~~~~i~~~il~~-l~~~~~~~~l~~TH~~el 781 (938)
..|.|+|+||| ++|+|+.....+ ..++.. +.+..+..++++||+.++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i-~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKI-KTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHH-HHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHH-HHHHHHHHhcCCCCceEEEeccchh
Confidence 46899999999 999999877777 566655 444346778889999653
No 112
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.22 E-value=1.6e-06 Score=107.19 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=68.5
Q ss_pred HHHHhcCCch-hhhhcccchHHHHHHHHHHHHh-CCCC--cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe
Q 002306 701 CIFARVGAGD-CQLRGVSTFMQEMLETASILKG-ATDR--SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT 776 (938)
Q Consensus 701 ~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~~~--slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T 776 (938)
.++..+|... .+.+..+++|++++|...+++. +.++ .++||||||+|||+.+...+ ..+++.+.+ .|.++|++|
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l-~~~L~~L~~-~G~TvivVt 523 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERL-IKTLKKLRD-LGNTVIVVE 523 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHH-HHHHHHTTT-TTCEEEEEC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHH-HHHHHHHHh-cCCEEEEEe
Confidence 4567788764 3667788999888777666665 4444 49999999999999999999 777888876 699999999
Q ss_pred CChHHHHHhhh
Q 002306 777 HFHELTALAHE 787 (938)
Q Consensus 777 H~~el~~~~~~ 787 (938)
||.++...+++
T Consensus 524 Hd~~~~~~aD~ 534 (916)
T 3pih_A 524 HDEEVIRNADH 534 (916)
T ss_dssp CCHHHHHTCSE
T ss_pred CCHHHHHhCCE
Confidence 99988877776
No 113
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=1.5e-06 Score=96.91 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=31.8
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChH
Q 002306 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 733 a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~e 780 (938)
..++.++|+|||.+ +|+....++ ..+++... .++++|++||+.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L-~~~le~~~--~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAAL-RRTMEKYS--KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHH-HHHHHHST--TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHH-HHHHHhhc--CCCEEEEEeCCHH
Confidence 34788999999999 998765555 44555433 3688999999854
No 114
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.17 E-value=2.3e-06 Score=105.06 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=69.0
Q ss_pred HHHhcCCch-hhhhcccchHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 702 IFARVGAGD-CQLRGVSTFMQEMLETASILKG-ATD--RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 702 i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~~--~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
.+..+|+.. .+.+..+++|++++|...++.. +.+ +.++||||||+||||.+...+ +.+++.|.+ .|.++|+++|
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L-~~~L~~Lr~-~G~TVIvVeH 564 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL-IATLKSMRD-LGNTLIVVEH 564 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHT-TTCEEEEECC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHH-HHHHHHHHh-CCCEEEEEec
Confidence 367778764 4677888999888777666665 444 489999999999999999998 888898976 7999999999
Q ss_pred ChHHHHHhhh
Q 002306 778 FHELTALAHE 787 (938)
Q Consensus 778 ~~el~~~~~~ 787 (938)
+.+....+|+
T Consensus 565 dl~~i~~ADr 574 (972)
T 2r6f_A 565 DEDTMLAADY 574 (972)
T ss_dssp CHHHHHSCSE
T ss_pred CHHHHHhCCE
Confidence 9988777776
No 115
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.15 E-value=6.2e-06 Score=89.59 Aligned_cols=123 Identities=14% Similarity=0.119 Sum_probs=69.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc---cccccccccchHHHHHH---HhcCCchhhhhcccchHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCIF---ARVGAGDCQLRGVSTFMQEMLETA 727 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g---~~vp~~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 727 (938)
.++++++|+||||+||||+++.++..... ..| .+++++..+....+.+- .+.|....... + ..+ +.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~--~--~~~---l~ 174 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCY--T--KEE---FQ 174 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCS--S--HHH---HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecC--C--HHH---HH
Confidence 45789999999999999999999875432 123 34555544433333322 22332211110 0 112 22
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh--cCCCeEEE-EeCCh-HHHHHhhh
Q 002306 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE--EIRAPTLF-ATHFH-ELTALAHE 787 (938)
Q Consensus 728 ~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~--~~~~~~l~-~TH~~-el~~~~~~ 787 (938)
.++..+.++++||+| |.|+|+.+...+ ..+.+.+.. ..+..+++ +||.. ++.+.++.
T Consensus 175 ~al~~~~~~dlvIiD--T~G~~~~~~~~~-~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~ 235 (296)
T 2px0_A 175 QAKELFSEYDHVFVD--TAGRNFKDPQYI-DELKETIPFESSIQSFLVLSATAKYEDMKHIVKR 235 (296)
T ss_dssp HHHHHGGGSSEEEEE--CCCCCTTSHHHH-HHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTT
T ss_pred HHHHHhcCCCEEEEe--CCCCChhhHHHH-HHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHH
Confidence 333345788999999 778888765544 444443321 11223444 58884 45566665
No 116
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.15 E-value=3.2e-06 Score=92.19 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
++|++++|+|||||||||+++.++...
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 367899999999999999999998653
No 117
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.12 E-value=1.1e-06 Score=96.03 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=28.3
Q ss_pred EEEEeCCCC-CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 738 LIIIDELGR-GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 738 lvllDEp~~-gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
++++|||++ |+|+.+. .+++.+..+.+.++|+++||.
T Consensus 130 ll~ldePt~~~Ld~~~~-----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV-----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp EEEEECSSSSSCCHHHH-----HHHHHHTTTSCEEEEECCGGG
T ss_pred eeeeecCcccCCCHHHH-----HHHHHHHhcCCEEEEEEeCCC
Confidence 999999987 5999762 455566554577888899995
No 118
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.11 E-value=8.5e-06 Score=90.65 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=68.5
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh-hcccccccccccchHHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la-q~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (938)
+..|+++.|.||||+|||||+.+++...... ....|+..+...-. ....++|.. +++.-....-..+..++...+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~---~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP---EYAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH---HHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH---HHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 3578999999999999999999887544322 12234444432111 124456632 221111111122333333333
Q ss_pred HhCCCCcEEEEeCCCCCCC----------h---hhHHHHHHHHHHHH---HhcCCCeEEEEeCChH
Q 002306 731 KGATDRSLIIIDELGRGTS----------T---YDGFGLAWAICEHL---VEEIRAPTLFATHFHE 780 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gtd----------~---~~~~~i~~~il~~l---~~~~~~~~l~~TH~~e 780 (938)
.....+++|++|||+..+. + .....+ ...+..| +++.++++|+++|...
T Consensus 135 ~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~-~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLM-SQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHH-HHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHH-HHHHHHHHHHHHHhCCEEEEEecccc
Confidence 3345789999999999883 1 111122 2333333 2336999999999753
No 119
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.10 E-value=4.1e-06 Score=103.30 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=67.9
Q ss_pred HHhcCCch-hhhhcccchHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 703 FARVGAGD-CQLRGVSTFMQEMLETASILKG-ATD--RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 703 ~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-a~~--~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
+..+|+.. .+.+..+++|++++|...++.. +.+ +.++|||||++|||+.+...+ ..+++.|.+ .|.++|+++|+
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L-~~~L~~Lr~-~G~TVIvVeHd 582 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRL-IETLTRLRD-LGNTLIVVEHD 582 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHH-HHHHHHHHH-TTCEEEEECCC
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHH-HHHHHHHHH-cCCEEEEECCC
Confidence 56678764 3677888999888777666665 444 589999999999999999998 888888886 79999999999
Q ss_pred hHHHHHhhh
Q 002306 779 HELTALAHE 787 (938)
Q Consensus 779 ~el~~~~~~ 787 (938)
.++...+++
T Consensus 583 l~~i~~ADr 591 (993)
T 2ygr_A 583 EDTIEHADW 591 (993)
T ss_dssp HHHHHTCSE
T ss_pred HHHHHhCCE
Confidence 988777665
No 120
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.09 E-value=4.7e-06 Score=102.13 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=68.6
Q ss_pred HHHhcCCchh-hhhcccchHHHHHHHHHHHHh-CCCC--cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 702 IFARVGAGDC-QLRGVSTFMQEMLETASILKG-ATDR--SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 702 i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-a~~~--slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
.+..+|+... +.+..+++|++++|...+++. +.++ .++||||||+|||+.+...+ ..+++.|.+ .|.++|+++|
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L-~~~l~~L~~-~G~TVIvVeH 439 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL-LSALENLKR-GGNSLFVVEH 439 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHT-TTCEEEEECC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH-HHHHHHHHH-cCCEEEEEcC
Confidence 4567887643 677888999888777766665 4555 59999999999999999998 888888986 6999999999
Q ss_pred ChHHHHHhhh
Q 002306 778 FHELTALAHE 787 (938)
Q Consensus 778 ~~el~~~~~~ 787 (938)
++++...+++
T Consensus 440 dl~~l~~aD~ 449 (842)
T 2vf7_A 440 DLDVIRRADW 449 (842)
T ss_dssp CHHHHTTCSE
T ss_pred CHHHHHhCCE
Confidence 9988776665
No 121
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.02 E-value=7.9e-07 Score=101.04 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=25.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL 681 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~ 681 (938)
..+.++++|. ++|+||||+|||||++++++...
T Consensus 24 ~~vl~~vsf~------I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 24 KSVKRGFEFT------LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp TTCC-CCCEE------EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEecCCCEE------EEEECCCCCcHHHHHHHHhCCCC
Confidence 3566678775 39999999999999999876543
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.99 E-value=1.3e-06 Score=85.91 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=34.2
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
..+.++++|++.+|++++|+||||||||||+|.+++..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35677899999999999999999999999999998764
No 123
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.96 E-value=1.1e-05 Score=80.43 Aligned_cols=68 Identities=7% Similarity=-0.020 Sum_probs=49.9
Q ss_pred cchHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 717 STFMQEMLETASILKG-----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 717 s~f~~e~~~~~~il~~-----a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.+|+++++...+.+. ..+++++|||||++|+|+.....+ ..++..+.+ +.++|++||+..+...+++
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~-~~~l~~~~~--~~~~ivith~~~~~~~ad~ 135 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRV-ADLIKESSK--ESQFIVITLRDVMMANADK 135 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH-HHHHHHHTT--TSEEEEECSCHHHHTTCSE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHH-HHHHHHhcc--CCEEEEEEecHHHHHhCCE
Confidence 4456666665444433 256789999999999999988888 566666654 5789999999877666655
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.96 E-value=7e-06 Score=92.96 Aligned_cols=131 Identities=12% Similarity=0.030 Sum_probs=73.0
Q ss_pred cCCccccCCCCeE--EEEEecCCCCchhhhhhhhhhHhhhh------------cccccccccc-----------cch---
Q 002306 646 PNDCKLIRGKSWF--QIITGPNMGGKSTFIRQVGVNILMAQ------------VGSFVPCDRA-----------SIS--- 697 (938)
Q Consensus 646 ~n~~~l~~~~~~~--~~itGpNg~GKSTllr~i~~~~~laq------------~g~~vp~~~~-----------~~~--- 697 (938)
.++++|++.+|.+ ++|+|||||||||||+++++..+... ...+++.... .++
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~ 109 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQI 109 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-C
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhcc
Confidence 5688999999999 99999999999999999976532110 0112222110 000
Q ss_pred ---------------HHHHHHHhc-CCc-------hhh----hh---cc-cchHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 002306 698 ---------------VRDCIFARV-GAG-------DCQ----LR---GV-STFMQEMLETASILKGATDRSLIIIDELGR 746 (938)
Q Consensus 698 ---------------~~d~i~~~~-~~~-------d~~----~~---~~-s~f~~e~~~~~~il~~a~~~slvllDEp~~ 746 (938)
.++.++... +.. |.- .. .. ..+...-.++...+ .....+|++|+|+.
T Consensus 110 ~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L--~~~~~vI~Vi~KtD 187 (427)
T 2qag_B 110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKL--DSKVNIIPIIAKAD 187 (427)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHT--CSCSEEEEEESCGG
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHH--hhCCCEEEEEcchh
Confidence 111222222 221 110 00 00 01111112333333 35778999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 747 GTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 747 gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
.+.+.+...+...+.+.|.. .|..+++++.+.
T Consensus 188 ~Lt~~E~~~l~~~I~~~L~~-~gi~I~~is~~d 219 (427)
T 2qag_B 188 AISKSELTKFKIKITSELVS-NGVQIYQFPTDD 219 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHBT-TBCCCCCCC---
T ss_pred ccchHHHHHHHHHHHHHHHH-cCCcEEecCCCc
Confidence 99998888875555556765 689999888653
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.94 E-value=6.9e-06 Score=90.42 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
..+|++++|+|||||||||+++.++...
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998653
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.92 E-value=3.6e-05 Score=88.34 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=30.1
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
++++|++..|.+++|+|||||||||+++.++++.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4677878899999999999999999999998754
No 127
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.90 E-value=2.4e-05 Score=92.03 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=50.5
Q ss_pred HHHH-HHHHHHHHhCCCC--cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 720 MQEM-LETASILKGATDR--SLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 720 ~~e~-~~~~~il~~a~~~--slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
|+++ ++++.++..+.+| +++|||||++|+|+.....+ ..++..+.+ |.++|++||+++++..+++
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i-~~~l~~~~~--~~~vi~itH~~~~~~~~d~ 466 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAV-AEQLSRLAD--TRQVLVVTHLAQIAARAHH 466 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHH-HHHHHHHHH--HSEEEEECCCHHHHHHSSE
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHH-HHHHHHHhC--CCEEEEEecCHHHHHhCCE
Confidence 4333 3444444445677 99999999999999988888 677777775 7899999999998887776
No 128
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.86 E-value=7.2e-05 Score=82.97 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=68.1
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccchHHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (938)
+..|+++.|+||||+|||||+.+++....... ...|+..+...-.. ...++|.. +++......-..+..+....+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~---ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV---YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH---HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 35789999999999999999999876543211 11355444322111 34556643 222111111122333333322
Q ss_pred HhCCCCcEEEEeCCCCCCCh--hh-----------HHHHH--HHHHHHHHhcCCCeEEEEeCC
Q 002306 731 KGATDRSLIIIDELGRGTST--YD-----------GFGLA--WAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gtd~--~~-----------~~~i~--~~il~~l~~~~~~~~l~~TH~ 778 (938)
.....++++++|....=... .+ ...++ ...+..++++.++++|++.|-
T Consensus 135 ~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 23467899999997765531 11 12232 122344555579999999886
No 129
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.80 E-value=4.4e-06 Score=93.53 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=30.4
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+++++|.+.+|++++|+|||||||||+++.++..
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3678888889999999999999999999998664
No 130
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.79 E-value=4.8e-05 Score=87.86 Aligned_cols=128 Identities=12% Similarity=0.096 Sum_probs=71.5
Q ss_pred ccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh--cccccccccccchHHHHHHH-hcCCc-hhhhh----------
Q 002306 649 CKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--VGSFVPCDRASISVRDCIFA-RVGAG-DCQLR---------- 714 (938)
Q Consensus 649 ~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq--~g~~vp~~~~~~~~~d~i~~-~~~~~-d~~~~---------- 714 (938)
+..+..+|++++|.||+|+|||||+.+++......+ -..|+..+...-.+..++++ ..|.. +.+..
T Consensus 196 ~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~ 275 (454)
T 2r6a_A 196 MTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGK 275 (454)
T ss_dssp HHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHH
T ss_pred hcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHH
Confidence 334557899999999999999999999987654432 12233322222222233321 11110 00000
Q ss_pred ----------------cccch-HHHHHHHHHHHHhCCCCcEEEEeCCCCCCChh-----hH---HHHHHHHHHHHHhcCC
Q 002306 715 ----------------GVSTF-MQEMLETASILKGATDRSLIIIDELGRGTSTY-----DG---FGLAWAICEHLVEEIR 769 (938)
Q Consensus 715 ----------------~~s~f-~~e~~~~~~il~~a~~~slvllDEp~~gtd~~-----~~---~~i~~~il~~l~~~~~ 769 (938)
..+.+ ..++...+..+....++++|++|++....++. .. ..+ ...++.++++.|
T Consensus 276 ~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i-~~~Lk~lAke~~ 354 (454)
T 2r6a_A 276 LTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEI-SRSLKALARELE 354 (454)
T ss_dssp HHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHH-HHHHHHHHHHhC
Confidence 00111 23343333333334679999999999877542 11 233 344555665579
Q ss_pred CeEEEEeC
Q 002306 770 APTLFATH 777 (938)
Q Consensus 770 ~~~l~~TH 777 (938)
+++|+++|
T Consensus 355 i~vi~~sq 362 (454)
T 2r6a_A 355 VPVIALSQ 362 (454)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEec
Confidence 99999999
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.79 E-value=1.5e-05 Score=84.16 Aligned_cols=33 Identities=12% Similarity=-0.135 Sum_probs=26.0
Q ss_pred CCCCcEEEEe----CCCCCCChhhHHHHHHHHHHHHHh
Q 002306 733 ATDRSLIIID----ELGRGTSTYDGFGLAWAICEHLVE 766 (938)
Q Consensus 733 a~~~slvllD----Ep~~gtd~~~~~~i~~~il~~l~~ 766 (938)
+.+|+++++| ||++|+|+.....+ ...+..+.+
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i-~~~l~~~~~ 198 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAV-AARLRQYKD 198 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHH-HHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHH-HHHHHHHHH
Confidence 6789999999 99999999877777 444554443
No 132
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.76 E-value=6.9e-05 Score=81.31 Aligned_cols=109 Identities=16% Similarity=0.021 Sum_probs=56.9
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhHhhhhcccc---cccccccchH---HHHHHHhcCCchhhhhcccchHH
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSF---VPCDRASISV---RDCIFARVGAGDCQLRGVSTFMQ 721 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~---vp~~~~~~~~---~d~i~~~~~~~d~~~~~~s~f~~ 721 (938)
+++|+ .+++++|+||||+||||+++.++.... +.|.- +.++..+-.. +..+....|..- +..+...-..
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~-~~~~~~~~p~ 166 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV-LEVMDGESPE 166 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE-EECCTTCCHH
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhHHHHHHHhcccCCeEE-EEcCCCCCHH
Confidence 45665 688999999999999999999987543 22221 2222111111 112222333211 1000001112
Q ss_pred HHHHHHHHHHh--CCCCcEEEEeCC-CCCCChhhHHHHHHHHHHHH
Q 002306 722 EMLETASILKG--ATDRSLIIIDEL-GRGTSTYDGFGLAWAICEHL 764 (938)
Q Consensus 722 e~~~~~~il~~--a~~~slvllDEp-~~gtd~~~~~~i~~~il~~l 764 (938)
++.+ .++.. ..++++||+||| +.|+|+....++ .++...+
T Consensus 167 ~l~~--~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l-~~~~~~~ 209 (295)
T 1ls1_A 167 SIRR--RVEEKARLEARDLILVDTAGRLQIDEPLMGEL-ARLKEVL 209 (295)
T ss_dssp HHHH--HHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH-HHHHHHH
T ss_pred HHHH--HHHHHHHhCCCCEEEEeCCCCccccHHHHHHH-HHHhhhc
Confidence 2322 12222 257899999999 778887544444 4444443
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.67 E-value=0.00011 Score=82.49 Aligned_cols=122 Identities=9% Similarity=-0.048 Sum_probs=66.4
Q ss_pred EEEEEecCCCCchhhhhhhhhhHhhh-hc-ccccccccc--cchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhC
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNILMA-QV-GSFVPCDRA--SISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~~la-q~-g~~vp~~~~--~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a 733 (938)
.++|+||+|+||||+++.++...... .. -.++.+... ...++..++..+|.... ..+. ....-...+...+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGL-SRDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCC-CHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCC-CHHHHHHHHHHHHhhc
Confidence 89999999999999999987643221 11 122332221 12344555555553210 0111 1111122334444445
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh--cCCCeEEEEeCChHHHH
Q 002306 734 TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE--EIRAPTLFATHFHELTA 783 (938)
Q Consensus 734 ~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~--~~~~~~l~~TH~~el~~ 783 (938)
..+.+|++||+... |+.....+ ..+++.+.. ..+..+|++||+.++..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L-~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTF-IRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHH-HHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred CCeEEEEEECcccc-chHHHHHH-HHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 67889999999876 44333333 233332222 03778899999986543
No 134
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.57 E-value=1.7e-05 Score=82.73 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=21.9
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhh-hh
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVG-VN 679 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~-~~ 679 (938)
...+++|++.+|++++|+|||||||||+++.++ ..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 455788888899999999999999999999987 64
No 135
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.57 E-value=0.00019 Score=78.15 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=26.5
Q ss_pred ccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 649 CKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 649 ~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
+++....+++++|+||||+||||+++.++...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34444678899999999999999999998754
No 136
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.53 E-value=3e-05 Score=78.97 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..+|++++|+|||||||||+++.++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 357899999999999999999998775
No 137
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.52 E-value=5.7e-05 Score=77.03 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
|....|..++|+|+||+|||||++.++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56678899999999999999999998654
No 138
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.49 E-value=0.00022 Score=79.13 Aligned_cols=127 Identities=12% Similarity=0.031 Sum_probs=68.0
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-------cccccccccc-cchHHHHHHHhcCCch-----hhhhcccch
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------VGSFVPCDRA-SISVRDCIFARVGAGD-----CQLRGVSTF 719 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-------~g~~vp~~~~-~~~~~d~i~~~~~~~d-----~~~~~~s~f 719 (938)
+..|+++.|+||+|+|||||+.+++..+.+.. ...|+..+.. ....+..+..++|... ++.-....-
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 46789999999999999999999887544321 1234444432 1122233445555431 111000000
Q ss_pred HHHH----HHHHHHHHhC-CCCcEEEEeCCCCCCChh--------hH----HHHHHHHHHHHHhcCCCeEEEEeCChH
Q 002306 720 MQEM----LETASILKGA-TDRSLIIIDELGRGTSTY--------DG----FGLAWAICEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 720 ~~e~----~~~~~il~~a-~~~slvllDEp~~gtd~~--------~~----~~i~~~il~~l~~~~~~~~l~~TH~~e 780 (938)
..++ ..+...+... .++++|++|+++.-.... ++ ..+ ...+..++++.++++|+++|-..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~-l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQM-LSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHH-HHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHH-HHHHHHHHHHhCCEEEEEeecee
Confidence 1111 1222333322 678999999998755331 11 122 12233444457999999999753
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.45 E-value=4.2e-05 Score=85.62 Aligned_cols=125 Identities=10% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhh---hc-ccccccccc--cchHHHHHHHhcCCchhhhhcccchHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMA---QV-GSFVPCDRA--SISVRDCIFARVGAGDCQLRGVSTFMQEMLETA 727 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~la---q~-g~~vp~~~~--~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~ 727 (938)
..+..++|+||+|+||||+++.++....-. .. -.++.+... ....+..++..++.... ..+. +...-...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~-~~~~-~~~~~~~~l~ 120 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP-FTGL-SIAELYRRLV 120 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC-SSSC-CHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCC-CHHHHHHHHH
Confidence 456789999999999999999987643221 11 112222111 11223344333432110 0111 1111133344
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH--hcCCCeEEEEeCChHH
Q 002306 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLV--EEIRAPTLFATHFHEL 781 (938)
Q Consensus 728 ~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~--~~~~~~~l~~TH~~el 781 (938)
..+.....+.+|++||+....+..+. .+...+++.+. ...+..+|++||..++
T Consensus 121 ~~l~~~~~~~vlilDE~~~l~~~~~~-~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 121 KAVRDYGSQVVIVLDEIDAFVKKYND-DILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHHHTCCSCEEEEEETHHHHHHSSCS-THHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHhccCCeEEEEEcChhhhhccCcC-HHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 45554555889999999765432111 22244555442 2246778999998754
No 140
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.45 E-value=0.00014 Score=83.65 Aligned_cols=103 Identities=9% Similarity=0.113 Sum_probs=59.8
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHhhhhcc---cccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVG---SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~laq~g---~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 732 (938)
...++|+||+|+||||+++.++........+ .++.+.. ....+...+. .+ . ...+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~----~~~~~~~~~~------~~------~---~~~~~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSMK------EG------K---LNEFREK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH----HHHHHHHHHH------TT------C---HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH----HHHHHHHHHH------cc------c---HHHHHHH
Confidence 4578999999999999999998644222112 1222211 1111111110 00 0 0111222
Q ss_pred CC-CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 733 AT-DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 733 a~-~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
.. +++++++||+....+..........+++.+.+ .|+.+|++||.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~ 236 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDR 236 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 23 78999999998877643333333667777765 68899999997
No 141
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.39 E-value=0.00014 Score=83.36 Aligned_cols=69 Identities=7% Similarity=-0.021 Sum_probs=50.5
Q ss_pred cchHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 717 STFMQEMLETASILKG-A----TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 717 s~f~~e~~~~~~il~~-a----~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.+|+++++...+... + .+|+++|||||++++|+.....+ ..++..+.. .+.++|++||+.++...+++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l-~~~l~~~~~-~~~~~ii~th~~~~~~~~d~ 405 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRI-AAYIRRHRN-PDLQFIVISLKNTMFEKSDA 405 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHH-HHHHHHHCB-TTBEEEEECSCHHHHTTCSE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHH-HHHHHHHhc-CCCEEEEEECCHHHHHhCCE
Confidence 4566666655444433 3 57899999999999999888887 555666554 47899999999877666655
No 142
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.38 E-value=0.00015 Score=89.00 Aligned_cols=130 Identities=22% Similarity=0.127 Sum_probs=67.8
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhhhh-----cccccccccccchHHHHHHHhcCCchhhhhc--------------
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQ-----VGSFVPCDRASISVRDCIFARVGAGDCQLRG-------------- 715 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~laq-----~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~-------------- 715 (938)
.++.++|+|||||||||++.++.+.....+ +.+..|-......+.+++...++..-....|
T Consensus 108 ~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~ 187 (773)
T 2xau_A 108 NNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTI 187 (773)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCC
Confidence 467899999999999998887744322222 2223454443334444454444321111111
Q ss_pred ccchHHHHHH-HHHHHHhCCCCcEEEEeCCC-CCCChhhHHHHHHHHHHHHHhcCCCeEEE-EeCChH-HHHHhh
Q 002306 716 VSTFMQEMLE-TASILKGATDRSLIIIDELG-RGTSTYDGFGLAWAICEHLVEEIRAPTLF-ATHFHE-LTALAH 786 (938)
Q Consensus 716 ~s~f~~e~~~-~~~il~~a~~~slvllDEp~-~gtd~~~~~~i~~~il~~l~~~~~~~~l~-~TH~~e-l~~~~~ 786 (938)
.-..+.++.. .......+.+.++||+||+. +++|+.....+...+... .. ....+++ |||+.+ +.++..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~-~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RP-DLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CT-TCEEEEEESCSCCHHHHHHTT
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CC-CceEEEEeccccHHHHHHHhc
Confidence 1111233332 22222236788999999998 588875444443333322 11 2345556 599854 334443
No 143
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.37 E-value=5.9e-05 Score=85.56 Aligned_cols=125 Identities=12% Similarity=0.007 Sum_probs=69.4
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhH----------hhhhccccccccc---------cc--------chHH
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI----------LMAQVGSFVPCDR---------AS--------ISVR 699 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~----------~laq~g~~vp~~~---------~~--------~~~~ 699 (938)
++++|++..+..++|+|+|||||||||++++... +...+|. ++... .. ..+.
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~-V~~~~~~~~~l~DtpGli~~a~~~~~L~ 226 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV-VEVSEEERFTLADIPGIIEGASEGKGLG 226 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE-EECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE-EEecCcceEEEEeccccccchhhhhhhh
Confidence 4778888889999999999999999999987541 1111111 11100 00 0010
Q ss_pred HHHHHhcCCch------hh-hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe
Q 002306 700 DCIFARVGAGD------CQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP 771 (938)
Q Consensus 700 d~i~~~~~~~d------~~-~~~~s~f~~e~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~ 771 (938)
...+..+...+ ++ ......++..++++..+.. .+..|.++++ +++|+... .....+.+.+.+ .+.+
T Consensus 227 ~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~-~g~~ 300 (416)
T 1udx_A 227 LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAR-EGLA 300 (416)
T ss_dssp HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHT-TTSC
T ss_pred HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHh-cCCe
Confidence 11111111000 00 2223445555666555432 2468899999 99999876 443555555554 5777
Q ss_pred EEEEe-CC
Q 002306 772 TLFAT-HF 778 (938)
Q Consensus 772 ~l~~T-H~ 778 (938)
++++| |.
T Consensus 301 vi~iSA~~ 308 (416)
T 1udx_A 301 VLPVSALT 308 (416)
T ss_dssp EEECCTTT
T ss_pred EEEEECCC
Confidence 77654 44
No 144
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.33 E-value=0.00024 Score=82.01 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=52.4
Q ss_pred EEEEecCCCCchhhhhhhhhhHhhhhccc-ccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh--CCC
Q 002306 659 QIITGPNMGGKSTFIRQVGVNILMAQVGS-FVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG--ATD 735 (938)
Q Consensus 659 ~~itGpNg~GKSTllr~i~~~~~laq~g~-~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~--a~~ 735 (938)
++|+||+|+||||++|.++.-. +. |+......+. .. ..+. ++ .++..++.. ...
T Consensus 52 vLL~GppGtGKT~Laraia~~~-----~~~f~~is~~~~~------~~-------~~g~----~~-~~~r~lf~~A~~~~ 108 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA-----NVPFFHISGSDFV------EL-------FVGV----GA-ARVRDLFAQAKAHA 108 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGTT------TC-------CTTH----HH-HHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCHHHHH------HH-------Hhcc----cH-HHHHHHHHHHHhcC
Confidence 8899999999999999987632 21 1111100000 00 0000 11 111122221 357
Q ss_pred CcEEEEeCCCC----------CCChhhHHHHHHHHHHHHH---hcCCCeEEEEeCChHH
Q 002306 736 RSLIIIDELGR----------GTSTYDGFGLAWAICEHLV---EEIRAPTLFATHFHEL 781 (938)
Q Consensus 736 ~slvllDEp~~----------gtd~~~~~~i~~~il~~l~---~~~~~~~l~~TH~~el 781 (938)
|++|+|||+.. |.++.....+ ..++..+. ...+..+|.+||.++.
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l-~~LL~~ld~~~~~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTL-NQLLVEMDGFDSKEGIIVMAATNRPDI 166 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHH-HHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHH-HHHHHHHhccCCCCCEEEEEecCChhh
Confidence 89999999933 4444332333 55665553 2246788889999764
No 145
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.30 E-value=6.4e-05 Score=81.32 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..+.+++|+||+||||||+.+.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999988654
No 146
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.29 E-value=9.3e-05 Score=73.88 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=26.5
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.++++...+| +.+|+|||||||||++++|..+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4566666666 9999999999999999998664
No 147
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.29 E-value=0.0002 Score=80.35 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=39.9
Q ss_pred CCC-CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHHHhhh
Q 002306 733 ATD-RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHE 787 (938)
Q Consensus 733 a~~-~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~~~~~ 787 (938)
+.+ |+++|||||++|+|+.....+ ..++..+.+ +.++|++||+.++..++++
T Consensus 302 ~~~~~~~lllDEp~~~LD~~~~~~l-~~~l~~~~~--~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 302 IGNRVECIILDEPTVYLDENRRAKL-AEIFRKVKS--IPQMIIITHHRELEDVADV 354 (371)
T ss_dssp HSSCCSEEEEESTTTTCCHHHHHHH-HHHHHHCCS--CSEEEEEESCGGGGGGCSE
T ss_pred hcCCCCeEEEeCCCCcCCHHHHHHH-HHHHHHhcc--CCeEEEEEChHHHHhhCCE
Confidence 467 899999999999999888777 455555432 4689999999876555544
No 148
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.23 E-value=8.2e-05 Score=85.61 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=30.9
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhHh
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL 681 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~~ 681 (938)
.++++|++.+ ++++|+||||||||||||+++++..
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 4588888888 9999999999999999999987653
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.20 E-value=0.00013 Score=73.39 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=24.1
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+.+|++++|+|||||||||++|.++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 467899999999999999999998764
No 150
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.20 E-value=0.00014 Score=74.62 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=24.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNIL 681 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~ 681 (938)
.+|++++|+||||||||||+|.++...-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6789999999999999999999987543
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.17 E-value=0.00011 Score=73.76 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhH
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
+++++|+|||||||||++|.++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999987643
No 152
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.12 E-value=0.00038 Score=72.21 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=53.4
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhC
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGA 733 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a 733 (938)
.+..++|+||+|+||||+++.++....... ...++.+.... .. + ..++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~--------~~------~--------------~~~~~~~ 102 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA--------SI------S--------------TALLEGL 102 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG--------GS------C--------------GGGGTTG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH--------HH------H--------------HHHHHhc
Confidence 467899999999999999999875432210 00122211100 00 0 0011122
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe-EEEEeCC
Q 002306 734 TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP-TLFATHF 778 (938)
Q Consensus 734 ~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~-~l~~TH~ 778 (938)
.++.++++||+..-............+++.+.+ .+.. +|++|+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCC
Confidence 467899999987654432223333566666655 3444 7887774
No 153
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.11 E-value=0.0015 Score=72.60 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=65.2
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh-hcccccccccccchHHHHHHHhcCCc-hhhhh-cccchHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAG-DCQLR-GVSTFMQEMLETASI 729 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la-q~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~-~~s~f~~e~~~~~~i 729 (938)
+..|++++|.||+|+|||||..+++...... ....|+..+...-. ....++|.. +++.- ...+ ..++.++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~---~~a~~~g~~~~~l~i~~~~~-~e~~~~~~~~ 135 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP---IYARKLGVDIDNLLCSQPDT-GEQALEICDA 135 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH---HHHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccH---HHHHHcCCChhheeeeCCCC-HHHHHHHHHH
Confidence 3578999999999999999999887644322 12234544432111 123455542 11110 0111 1223333322
Q ss_pred HHhCCCCcEEEEeCCCCCCChhh------------H-HHHHHHHHHHH---HhcCCCeEEEEeCCh
Q 002306 730 LKGATDRSLIIIDELGRGTSTYD------------G-FGLAWAICEHL---VEEIRAPTLFATHFH 779 (938)
Q Consensus 730 l~~a~~~slvllDEp~~gtd~~~------------~-~~i~~~il~~l---~~~~~~~~l~~TH~~ 779 (938)
+.....+++|++|.++.-....+ . ..+ ..++..| +++.++++|++.|-.
T Consensus 136 l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~-~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM-SQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHH-HHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHH-HHHHHHHHHHHHHhCCEEEEEeccc
Confidence 22235789999999987664211 0 112 2222222 334799999999964
No 154
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.11 E-value=0.00047 Score=75.61 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=53.5
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHhCC
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT 734 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~a~ 734 (938)
+..++|+||+|+||||+++.++....... --.++.+... ...+...+ ..+ .+.. ......
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~----~~~~~~~~------~~~------~~~~---~~~~~~ 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF----AQAMVEHL------KKG------TINE---FRNMYK 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH----HHHHHHHH------HHT------CHHH---HHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH----HHHHHHHH------HcC------cHHH---HHHHhc
Confidence 45789999999999999999876432210 0112222111 11111110 000 0011 111123
Q ss_pred CCcEEEEeCCCCCCCh-hhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 735 DRSLIIIDELGRGTST-YDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 735 ~~slvllDEp~~gtd~-~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
++.++++||+..-... .....+ ..+++.+.+ .+..+|++|+.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l-~~~l~~~~~-~~~~iii~~~~ 140 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEF-FHIFNTLYL-LEKQIILASDR 140 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHH-HHHHHHHHH-TTCEEEEEESS
T ss_pred CCCEEEEcCcccccCChHHHHHH-HHHHHHHHH-CCCeEEEEecC
Confidence 5789999999763321 223333 566666665 56777777764
No 155
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00015 Score=73.82 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
+|++++|+|||||||||++|.++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999987643
No 156
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.09 E-value=0.00063 Score=74.77 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=66.8
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-------cccccccccc-cchHHHHHHHhcCCch-----hhhhcccch
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-------VGSFVPCDRA-SISVRDCIFARVGAGD-----CQLRGVSTF 719 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-------~g~~vp~~~~-~~~~~d~i~~~~~~~d-----~~~~~~s~f 719 (938)
+..|+++.|.||+|+|||||+.+++......+ ...|+..+.. ....+..+..++|..- ++.-. ..+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~-~~~ 182 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYI-RAI 182 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEE-ECC
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEE-eCC
Confidence 35689999999999999999999876543321 1234444432 1122223445565431 11100 111
Q ss_pred HH-HH----HHHHHHHHhCCCCcEEEEeCCCCCCCh--------hhHHHHHHHH---HHHHHhcCCCeEEEEeCCh
Q 002306 720 MQ-EM----LETASILKGATDRSLIIIDELGRGTST--------YDGFGLAWAI---CEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 720 ~~-e~----~~~~~il~~a~~~slvllDEp~~gtd~--------~~~~~i~~~i---l~~l~~~~~~~~l~~TH~~ 779 (938)
.. ++ ..+...+....++++|++|+++.-... .+.......+ +..++++.++++|++.|-.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 11 11 122223332267899999999864422 1221111222 3334444689999998864
No 157
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.07 E-value=0.0004 Score=70.44 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=20.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhhH
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
..++|+||+|+||||+++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999987643
No 158
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.02 E-value=0.00089 Score=76.09 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=59.1
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhhhhccc---ccccccccchHHHHH---HHhcCCchhhhhcccchHHHHHHHHH
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS---FVPCDRASISVRDCI---FARVGAGDCQLRGVSTFMQEMLETAS 728 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~---~vp~~~~~~~~~d~i---~~~~~~~d~~~~~~s~f~~e~~~~~~ 728 (938)
.+.+++++||||+||||++..++... +..|. ++.++..+.+.++.+ -.+.|..-........ ..+.. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d-p~~i~--~~ 170 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN-PIEIA--KK 170 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC-HHHHH--HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC-HHHHH--HH
Confidence 46899999999999999999987643 22232 223333332333322 2333331110000000 11111 12
Q ss_pred HHHhC--CCCcEEEEeCCCCC---CChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 729 ILKGA--TDRSLIIIDELGRG---TSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 729 il~~a--~~~slvllDEp~~g---td~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
.+..+ ..++++|+|+||+. .|+.....+ ..+...+.. ....+++.+|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el-~~i~~~~~p-d~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEM-KEMYDVLKP-DDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHH-HHHHHHHCC-SEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHH-HHHHHhhCC-cceEEEEeCcc
Confidence 23333 47899999999964 566544444 444444322 23334444554
No 159
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.02 E-value=0.00037 Score=72.14 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=59.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhh--cccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQ--VGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 731 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq--~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 731 (938)
..|.+++++||-|+||||++...+.-..-+. ...+-|....+ + ...+.+++|..-... ..... .++...+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-~~~i~srlG~~~~~~-~~~~~----~~i~~~i~ 82 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQSRTGTSLPSV-EVESA----PEILNYIM 82 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCCCCCCSSCCE-EESST----HHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-HHHHHHhcCCCcccc-ccCCH----HHHHHHHH
Confidence 4588999999999999998877654332221 11122232222 1 113445565421110 11111 11222222
Q ss_pred h---CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 732 G---ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 732 ~---a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
. ..++++|++||.-- ++.. + ...+..+.+ .|.++|++-|
T Consensus 83 ~~~~~~~~dvViIDEaQ~-l~~~----~-ve~l~~L~~-~gi~Vil~Gl 124 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQF-FDDR----I-CEVANILAE-NGFVVIISGL 124 (223)
T ss_dssp STTSCTTCCEEEECSGGG-SCTH----H-HHHHHHHHH-TTCEEEEECC
T ss_pred HHhhCCCCCEEEEecCcc-CcHH----H-HHHHHHHHh-CCCeEEEEec
Confidence 2 23579999999853 3331 2 234566776 5899999999
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.02 E-value=0.00027 Score=81.93 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=23.1
Q ss_pred ccCCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 651 LIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
++...+..++|.|++||||||+|+++..
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3334567899999999999999999764
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.96 E-value=0.00027 Score=71.79 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.7
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
++.+|.+++|+|||||||||+++.++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999998764
No 162
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.95 E-value=0.0016 Score=71.40 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=28.9
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.+++|...++++++|+||||+||||++..+|...
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3566766788999999999999999999988743
No 163
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.94 E-value=0.00015 Score=79.10 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
..|.+++|+|||||||||+++.++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999987753
No 164
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.93 E-value=0.00089 Score=73.67 Aligned_cols=118 Identities=10% Similarity=0.020 Sum_probs=67.3
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccchHHHHHHHhc-CCc-hhhhhcccch-HHHHHHHH
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARV-GAG-DCQLRGVSTF-MQEMLETA 727 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~~~d~i~~~~-~~~-d~~~~~~s~f-~~e~~~~~ 727 (938)
...+|++++|.|++|+|||||+.+++....... -..|+..+...-.+..++++.. +.. +.+..+ .+ ..+..++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g--~Ls~~e~~~l~ 119 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESG--RLDDDQWENLA 119 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHT--CCCHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcC--CCCHHHHHHHH
Confidence 446789999999999999999999887554421 1123333333333344444322 111 112222 22 24555565
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC-CCeEEEEeC
Q 002306 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEI-RAPTLFATH 777 (938)
Q Consensus 728 ~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~-~~~~l~~TH 777 (938)
.+...+.+..++|.|+|+.. +. .| .+.++++.++. |..+|++=|
T Consensus 120 ~a~~~l~~~~l~I~d~~~~s--i~---~i-~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 120 KCFDHLSQKKLFFYDKSYVR--IE---QI-RLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHSCEEEECCTTCC--HH---HH-HHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHhcCCeEEeCCCCCc--HH---HH-HHHHHHHHHhcCCCCEEEEec
Confidence 55555556679999998543 32 33 44555555545 677777744
No 165
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.93 E-value=0.00022 Score=78.79 Aligned_cols=36 Identities=28% Similarity=0.202 Sum_probs=31.4
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
+.+++++...+|.+++|+||||||||||++.++...
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 445788888899999999999999999999987654
No 166
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.92 E-value=0.00029 Score=71.58 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=22.7
Q ss_pred ccccCCccccCCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 643 ~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+..++++|...++.+++|+||+||||||+.+.++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 578889999998999999999999999999999875
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.91 E-value=0.00032 Score=71.32 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=23.0
Q ss_pred ccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 651 LIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 651 l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+....|++++|+|||||||||++|.++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 33457899999999999999999998764
No 168
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.87 E-value=0.00036 Score=69.69 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.|++++|+|||||||||+++.++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999998663
No 169
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.83 E-value=0.00034 Score=70.19 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.9
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
|++++|+|||||||||++|.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999864
No 170
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.0012 Score=73.72 Aligned_cols=124 Identities=19% Similarity=0.140 Sum_probs=63.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhh----cc---ccccccc--ccchHHHHHHHhcCCchhhhhcccchHHH-H
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQ----VG---SFVPCDR--ASISVRDCIFARVGAGDCQLRGVSTFMQE-M 723 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq----~g---~~vp~~~--~~~~~~d~i~~~~~~~d~~~~~~s~f~~e-~ 723 (938)
..+..++|+||.|+||||+++.++....-.. .+ .++.+.. ....++..++..++..-. ..+.+ ..+ .
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~--~~~~~ 118 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP-FTGLS--VGEVY 118 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC-SSCCC--HHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC-CCCCC--HHHHH
Confidence 4566899999999999999999875432110 01 1122221 112334455555543211 01111 122 2
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh---cCCCeEEEEeCChH
Q 002306 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVE---EIRAPTLFATHFHE 780 (938)
Q Consensus 724 ~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~---~~~~~~l~~TH~~e 780 (938)
..+...+.....+.+|++||+..-.+..........+++.... ..+..+|++|+..+
T Consensus 119 ~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 3333344334457799999986543221023333455544321 24567888998764
No 171
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.76 E-value=0.0037 Score=71.75 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=26.4
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHhh
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILM 682 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~l 682 (938)
+..+|.+++|.|++|+|||||+.+++.....
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999998876544
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.71 E-value=0.0037 Score=61.76 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=21.1
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+..++|+||.|+||||+++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999988754
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.71 E-value=0.0033 Score=64.65 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..++|+||.|+||||+++.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998653
No 174
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.0036 Score=65.17 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.0
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.|+.++|.||+||||||++....+-
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 3678999999999999999876543
No 175
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.69 E-value=0.0081 Score=66.87 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=66.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhh-hcccccccccccchHHHHHHHhcCCc-hhhh-hcccchHHHHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAG-DCQL-RGVSTFMQEMLETASIL 730 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~la-q~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~-~~~s~f~~e~~~~~~il 730 (938)
..|+++.|.||.|+|||||..+++...... ....|+..+...-.. ...++|.. +++. ....+. .++.+...-+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~---~a~~~g~d~~~l~i~~~~~~-e~~l~~l~~l 147 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV---YARALGVNTDELLVSQPDNG-EQALEIMELL 147 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSH-HHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH---HHHHcCCCHHHceeecCCcH-HHHHHHHHHH
Confidence 568899999999999999999886543321 122444444322111 24455542 1111 111122 2222332222
Q ss_pred HhCCCCcEEEEeCCCCCCC-h-hh----------H-HHHHHHHHHHH---HhcCCCeEEEEeCCh
Q 002306 731 KGATDRSLIIIDELGRGTS-T-YD----------G-FGLAWAICEHL---VEEIRAPTLFATHFH 779 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gtd-~-~~----------~-~~i~~~il~~l---~~~~~~~~l~~TH~~ 779 (938)
.....+++|++|.++.=.. . .+ . ..+ ..++..| +++.++++|++.|-.
T Consensus 148 ~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~-~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLM-SQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHH-HHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HhcCCCCEEEEeChHHhccccccccccccchhhHHHHHH-HHHHHHHHHHHHHcCCEEEEEEecc
Confidence 2345789999999987542 1 11 1 122 3344444 445799999998864
No 176
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.67 E-value=0.00057 Score=76.00 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=38.8
Q ss_pred hHHHHHH-HHHHHHhC---------CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 719 FMQEMLE-TASILKGA---------TDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 719 f~~e~~~-~~~il~~a---------~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
+|+++++ ++.++..+ .+|+++|||||++++|+.....+ ..++..+ +.++|++||.
T Consensus 266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l-~~~l~~~----~qt~i~~th~ 330 (359)
T 2o5v_A 266 ASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYL-LDLAASV----PQAIVTGTEL 330 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHH-HHHHHHS----SEEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHH-HHHHHhc----CcEEEEEEec
Confidence 4455555 44444455 78999999999999999877776 4443332 3688889995
No 177
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.66 E-value=0.0037 Score=67.39 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.1
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+..++|+||+|+||||++|.++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 356789999999999999999875
No 178
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.64 E-value=0.0027 Score=69.56 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=25.4
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILM 682 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~l 682 (938)
+..|+++.|.||+|+|||||..+++..+.+
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l 124 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQN 124 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 357899999999999999999998865433
No 179
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.60 E-value=0.0012 Score=73.34 Aligned_cols=9 Identities=0% Similarity=-0.108 Sum_probs=3.7
Q ss_pred HHHHHHHhC
Q 002306 725 ETASILKGA 733 (938)
Q Consensus 725 ~~~~il~~a 733 (938)
++..++...
T Consensus 312 ~l~~~l~~~ 320 (359)
T 2o5v_A 312 YLLDLAASV 320 (359)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 344444433
No 180
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.60 E-value=0.0099 Score=64.19 Aligned_cols=124 Identities=15% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh---hcccccccccccchHHHHHHHhcCCc-hhhhhcccchHHHH-HHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA---QVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEM-LETA 727 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la---q~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~-~~~~ 727 (938)
+..| ++.|.||.|+|||||+-+++.-.... ....|+..+..--+ ....++|.. +++.--..+-..++ .++.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 3567 89999999999999977765433321 12245555543222 135677753 33322111222233 3344
Q ss_pred HHHH--hCCCCcEEEEeCCCCCCC--hh-------------hHHHHHHHH--HHHHHhcCCCeEEEEeCChH
Q 002306 728 SILK--GATDRSLIIIDELGRGTS--TY-------------DGFGLAWAI--CEHLVEEIRAPTLFATHFHE 780 (938)
Q Consensus 728 ~il~--~a~~~slvllDEp~~gtd--~~-------------~~~~i~~~i--l~~l~~~~~~~~l~~TH~~e 780 (938)
..+. ....+++|++|-..+=.. .. ....++.++ +..++++.++++||+-|-..
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 4442 235789999998876542 11 112232222 12234458999999999865
No 181
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.59 E-value=0.00075 Score=69.07 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+|++++|+|||||||||+++.++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999999988653
No 182
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.56 E-value=0.0044 Score=61.08 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.7
Q ss_pred CeEEEEEecCCCCchhhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+..++|+||.|+||||+++.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456799999999999999998754
No 183
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.56 E-value=0.0094 Score=64.60 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..|.+++|+||.|+|||||..+++..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45678899999999999999998764
No 184
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.56 E-value=0.00074 Score=68.53 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=27.5
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
...+...+|.+++|+|||||||||++|.++...
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555779999999999999999999987744
No 185
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.56 E-value=0.001 Score=69.24 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.9
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
...+|.+++|.|||||||||+++.++..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467899999999999999999998775
No 186
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.53 E-value=0.0048 Score=66.86 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
...+..++|+||+|+||||+.|.++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 355678999999999999999998763
No 187
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.46 E-value=0.00084 Score=66.08 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.3
Q ss_pred CeEEEEEecCCCCchhhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+.+++|+|||||||||++|.++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.44 E-value=0.0011 Score=65.61 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+|.+++|+|||||||||++|.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35789999999999999999998753
No 189
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.43 E-value=0.0033 Score=68.68 Aligned_cols=121 Identities=11% Similarity=0.110 Sum_probs=65.9
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccchHHHHHHHhc-CCc-hhhhhcccchH-HHHHHHH
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARV-GAG-DCQLRGVSTFM-QEMLETA 727 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~~~d~i~~~~-~~~-d~~~~~~s~f~-~e~~~~~ 727 (938)
...+|++++|.|+.|+|||||+.+++....... -..|+..+...-.+..++.+.. +.. ..+..+...++ .+..++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~ 143 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLS 143 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHH
Confidence 457899999999999999999999886543321 2233433333333344444322 221 11211210011 2233444
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCe--EEEEeCC
Q 002306 728 SILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAP--TLFATHF 778 (938)
Q Consensus 728 ~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~--~l~~TH~ 778 (938)
.+...+....+++.|+|+ ++.. .+ .+.++.+..+.|+. +|++=|.
T Consensus 144 ~a~~~l~~~~i~i~d~~~--~~~~---~i-~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 144 MAIGEISNSNINIFDKAG--QSVN---YI-WSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHTSCEEEECCSC--CBHH---HH-HHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHhCCCEEEECCCC--CCHH---HH-HHHHHHHHHhcCCCCeEEEEeCc
Confidence 444444456799999885 3332 33 34445555545677 7777554
No 190
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.40 E-value=0.0013 Score=63.59 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+.+|+|||||||||+|.++..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999999865
No 191
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.38 E-value=0.00081 Score=72.03 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=26.9
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+.+++++....| ++|+||||+||||++|+++..
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 345667766666 899999999999999998774
No 192
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.38 E-value=0.00036 Score=83.56 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=30.6
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.+.+.+++.+..|+.++|+||||+||||++|.++...
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3445666766788999999999999999999998754
No 193
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.37 E-value=0.0013 Score=74.70 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.+|.+++|+|||||||||+|++++...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999987643
No 194
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.35 E-value=0.0027 Score=65.46 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=58.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc--cccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG--SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 731 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g--~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 731 (938)
..|.+.+++||=||||||.|-..+.-...+..- .+-|+...+.+ ..+.+++|..-... +.... .+ ++.
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~a~-~i~~~-~d------i~~ 86 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEAL-PACLL-RD------VAQ 86 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEE-EESSG-GG------GHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch--HHHHhhcCCeeEEE-ecCCH-HH------HHH
Confidence 358899999999999998766554433333222 22344444444 56777776431110 11111 11 122
Q ss_pred hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 732 GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 732 ~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
.+.+.++|++||.---++ + ..+++.+.+ .|..||++-++.
T Consensus 87 ~~~~~dvViIDEaQF~~~------v-~el~~~l~~-~gi~VI~~GL~~ 126 (234)
T 2orv_A 87 EALGVAVIGIDEGQFFPD------I-VEFCEAMAN-AGKTVIVAALDG 126 (234)
T ss_dssp HHTTCSEEEESSGGGCTT------H-HHHHHHHHH-TTCEEEEECCSB
T ss_pred HhccCCEEEEEchhhhhh------H-HHHHHHHHh-CCCEEEEEeccc
Confidence 225678999999866543 3 667777776 789999999983
No 195
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.34 E-value=0.00052 Score=80.02 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=28.8
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.+++++.+..|..++|+|||||||||+|++++...
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34566666788899999999999999999986643
No 196
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.32 E-value=0.00084 Score=75.08 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=30.3
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++++++..|++++|+||||+||||+++.++.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4557788889999999999999999999999886
No 197
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.32 E-value=0.0021 Score=68.89 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+.-++|+||.|+||||+.+.++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3455689999999999999999865
No 198
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.30 E-value=0.0033 Score=77.60 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=23.8
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+..++.++|+||||+||||++|.++..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456778999999999999999998763
No 199
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.28 E-value=0.00051 Score=72.45 Aligned_cols=36 Identities=14% Similarity=-0.044 Sum_probs=32.3
Q ss_pred ccccCCccccCCC---CeEEEEEecCCCCchhhhhhhhh
Q 002306 643 NFIPNDCKLIRGK---SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 643 ~~v~n~~~l~~~~---~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+.++++|.+.+ |++++|+||+||||||+.|.++.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999888 99999999999999999999875
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.21 E-value=0.0021 Score=70.05 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=51.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHhhhhccc---ccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGS---FVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~laq~g~---~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 732 (938)
+.-++|+||.|+|||++++.++..... .-|. |+.+. .++..+...++.. . ...+ +..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~----~l~~~l~~~~~~~-~----~~~~----------~~~ 211 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP----SFAIDVKNAISNG-S----VKEE----------IDA 211 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH----HHHHHHHCCCC---------CCT----------THH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH----HHHHHHHHHhccc-h----HHHH----------HHH
Confidence 457899999999999999998764331 2221 11111 1122222111110 0 0011 111
Q ss_pred CCCCcEEEEeCCCCC-CChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 733 ATDRSLIIIDELGRG-TSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 733 a~~~slvllDEp~~g-td~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
..+.++|+|||++.- .++.....+...+++.... .+..+|++|+.
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~-~~~~~IitSN~ 257 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRML-EELPTFFTSNY 257 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHH-HTCCEEEEESS
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHH-CCCcEEEECCC
Confidence 224579999999653 2222222343456665433 35678888886
No 201
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.21 E-value=0.0016 Score=68.66 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=22.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~ 677 (938)
..|.+++|+|||||||||++|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999986
No 202
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.18 E-value=0.011 Score=68.66 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.5
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..++.+..+.| ++|+||||+||||++|.++..
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 34555655555 899999999999999999864
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.17 E-value=0.0019 Score=65.36 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=22.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..|++++|+|||||||||+++.++.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHh
Confidence 4688999999999999999998764
No 204
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.14 E-value=0.0023 Score=64.98 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
...+.+++|+|||||||||+++.++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999998764
No 205
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.10 E-value=0.0057 Score=66.03 Aligned_cols=24 Identities=25% Similarity=-0.021 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
...++|.||.|+|||++.+.+|.-
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356888999999999999998763
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.10 E-value=0.017 Score=60.76 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEEecCCCCchhhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~ 679 (938)
-++|+||+|+||||++|.++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4889999999999999998764
No 207
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0073 Score=68.61 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
++.+++++||+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467999999999999999988875
No 208
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.07 E-value=0.0022 Score=70.23 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
++++|+|||||||||+||.+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 58999999999999999998754
No 209
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.07 E-value=0.0041 Score=62.67 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=57.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhcc--cccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVG--SFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 731 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g--~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 731 (938)
..|.+.+++||-|+||||.+-.++.-..-+..- .+-|....+.+ ...+.+++|..-.. ...+.. ..++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s~~g~~~~a-~~~~~~-------~~i~~ 76 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGEKEQA-VAIKNS-------REILK 76 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEEC-EEESSS-------THHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHhhcCCceee-EeeCCH-------HHHHH
Confidence 457899999999999999887665433222211 12222211111 11233444432110 011111 12333
Q ss_pred hCC-CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 732 GAT-DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 732 ~a~-~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
.+. +.++|++||.-- +++.. ...++.+.+ .|.+||++.++
T Consensus 77 ~~~~~~dvViIDEaqf-l~~~~-----v~~l~~l~~-~~~~Vi~~Gl~ 117 (191)
T 1xx6_A 77 YFEEDTEVIAIDEVQF-FDDEI-----VEIVNKIAE-SGRRVICAGLD 117 (191)
T ss_dssp HCCTTCSEEEECSGGG-SCTHH-----HHHHHHHHH-TTCEEEEEECS
T ss_pred HHhccCCEEEEECCCC-CCHHH-----HHHHHHHHh-CCCEEEEEecc
Confidence 333 468999999644 54432 234566676 48999999884
No 210
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.05 E-value=0.0022 Score=71.41 Aligned_cols=44 Identities=14% Similarity=-0.003 Sum_probs=29.3
Q ss_pred CCCCcEEEEe-CCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEe--CCh
Q 002306 733 ATDRSLIIID-ELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFAT--HFH 779 (938)
Q Consensus 733 a~~~slvllD-Ep~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~T--H~~ 779 (938)
..+.-|+++| +++.|+|..+...+...+.+. . .+.+++++. ||.
T Consensus 246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~-~--~~~piilV~NK~Dl 292 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE-F--KDLPFLVVINKIDV 292 (357)
T ss_dssp TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHH-T--TTSCEEEEECCTTT
T ss_pred cCCEEEEEEeCCccccCCHHHHHHHHHHHHHh-c--CCCCEEEEEECccc
Confidence 4566788999 999999887665553333222 1 167787777 775
No 211
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.04 E-value=0.0022 Score=73.34 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=24.3
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
...+++++|+|||||||||+|++++.+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3567899999999999999999997654
No 212
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.00 E-value=0.015 Score=60.20 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..|.+++|.||+||||||+++.++..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999998753
No 213
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.96 E-value=0.0018 Score=68.14 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=26.7
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+.+++++....| ++|+||||+||||++|.++..
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 345666766666 899999999999999998764
No 214
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.87 E-value=0.0035 Score=63.84 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+.+|+|||||||||+|.+|..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35999999999999999999865
No 215
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.84 E-value=0.0088 Score=72.12 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=62.3
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHhh-hhccccccccc-ccchHHHHHHHhc------------CCchhhh--hc
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILM-AQVGSFVPCDR-ASISVRDCIFARV------------GAGDCQL--RG 715 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~l-aq~g~~vp~~~-~~~~~~d~i~~~~------------~~~d~~~--~~ 715 (938)
....++.++|+|+||+|||||++.+...... ...|....... ..... ...-..+ +...++. .|
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~-~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTP-EAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSH-HHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCH-HHHhcCCeEEecceEEeeCCEEEEEEeCCC
Confidence 3467889999999999999999998643211 11121100000 00000 0000000 0111111 23
Q ss_pred ccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH
Q 002306 716 VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781 (938)
Q Consensus 716 ~s~f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el 781 (938)
...|..++.+ .++. .+..++++| ++.|.++... .+++.+.. .+.+++++.|-.++
T Consensus 84 ~~~f~~~~~~---~l~~-ad~~ilVvD-~~~g~~~qt~-----~~~~~~~~-~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 84 YGDFVGEIRG---ALEA-ADAALVAVS-AEAGVQVGTE-----RAWTVAER-LGLPRMVVVTKLDK 138 (665)
T ss_dssp SGGGHHHHHH---HHHH-CSEEEEEEE-TTTCSCHHHH-----HHHHHHHH-TTCCEEEEEECGGG
T ss_pred ccchHHHHHH---HHhh-cCcEEEEEc-CCcccchhHH-----HHHHHHHH-ccCCEEEEecCCch
Confidence 4456544433 3332 456789999 9999987644 23344444 57888888887664
No 216
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.84 E-value=0.012 Score=66.72 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=25.5
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
++++. .+++++++||||+||||++..++...
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45554 67899999999999999999987643
No 217
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.81 E-value=0.0023 Score=68.42 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=26.6
Q ss_pred ccCCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 645 IPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 645 v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+.+++++....| ++|+||||+||||++|.++..
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 344666766666 899999999999999998764
No 218
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.81 E-value=0.0029 Score=68.71 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..|++++|+|||||||||||++++.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcc
Confidence 3578999999999999999999865
No 219
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.81 E-value=0.00052 Score=71.24 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=24.5
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
+++|. + .+++|+|||||||||+|++|+++.
T Consensus 22 ~~~~~--~-~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 22 TFDLD--E-LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp EECHH--H-HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEc--C-cEEEEECCCCCCHHHHHHHHhccc
Confidence 45553 3 688999999999999999998753
No 220
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.79 E-value=0.004 Score=63.33 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.1
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+.+++|+||+||||||+.+.++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999865
No 221
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.79 E-value=0.0032 Score=68.41 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~ 677 (938)
-.|++++|+||||+|||||+++++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999999976
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.79 E-value=0.018 Score=62.18 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhhH
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
..++|+||+|+||||+.|.++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999988754
No 223
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.011 Score=64.95 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEEEecCCCCchhhhhhhhhhH
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.++|+||+|+||||+++.++...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999988654
No 224
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.73 E-value=0.0032 Score=63.87 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+|||||||||+.+.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 225
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.71 E-value=0.0041 Score=67.88 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
-+++|+|||||||||+++.++.+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 226
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.69 E-value=0.0034 Score=69.25 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.5
Q ss_pred CCCeE--EEEEecCCCCchhhhhhhhhhH
Q 002306 654 GKSWF--QIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 654 ~~~~~--~~itGpNg~GKSTllr~i~~~~ 680 (938)
..|++ ++++||+|+||||+++.++...
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34555 8999999999999999988754
No 227
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.67 E-value=0.0044 Score=72.94 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=25.7
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
++++.. +|..++|+||||+||||++|+++...
T Consensus 101 ~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 101 KLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 344443 57799999999999999999998754
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.66 E-value=0.0035 Score=69.38 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.8
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.|++++|+||||+|||||++.++.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHhc
Confidence 578999999999999999999864
No 229
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.63 E-value=0.0039 Score=63.09 Aligned_cols=21 Identities=29% Similarity=0.075 Sum_probs=19.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|+|||||||||+.+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 230
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.60 E-value=0.03 Score=53.28 Aligned_cols=22 Identities=18% Similarity=-0.035 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.-++|+||.|+|||++.|.++.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4578999999999999999865
No 231
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.60 E-value=0.0036 Score=64.47 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCCh
Q 002306 735 DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 735 ~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~ 779 (938)
.|+++|+||++.-..+..+.++.++.+..+.. .|..++.++|-.
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~Nlq 127 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVNVQ 127 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEEGG
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcccc
Confidence 68999999999754444444555666666665 688899998864
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.59 E-value=0.0018 Score=70.36 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+|++++|+||||+|||||++.++.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 34688999999999999999999864
No 233
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.59 E-value=0.051 Score=62.11 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=26.2
Q ss_pred cCCCCeEEEEEecCCCCchhhhhhhhhhHhh
Q 002306 652 IRGKSWFQIITGPNMGGKSTFIRQVGVNILM 682 (938)
Q Consensus 652 ~~~~~~~~~itGpNg~GKSTllr~i~~~~~l 682 (938)
+..+|.+++|.|+.|+|||||.-+++.....
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 3467999999999999999999998875543
No 234
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.58 E-value=0.04 Score=64.18 Aligned_cols=30 Identities=20% Similarity=0.054 Sum_probs=25.5
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILM 682 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~l 682 (938)
...|++++|.|+.|+|||||+-+++.....
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 467899999999999999999998765443
No 235
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.047 Score=61.99 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+-++|.||.|+|||++.|++|.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3446789999999999999999876
No 236
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.50 E-value=0.0051 Score=60.90 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..|.+++|+|++||||||+.+.++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998763
No 237
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.49 E-value=0.0047 Score=63.54 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+||+||||||+.+.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 238
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.42 E-value=0.017 Score=58.86 Aligned_cols=108 Identities=21% Similarity=0.264 Sum_probs=55.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHhhhhccc--ccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGS--FVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 731 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~laq~g~--~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 731 (938)
..|.+.+++||=|+||||.+-..+.-..-+..-. +-|+...+.+ ...+.+++|..-... +.+.. ..++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g-e~~i~s~~g~~~~a~-~~~~~-------~~~~~ 96 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS-EEDVVSHNGLKVKAV-PVSAS-------KDIFK 96 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEE-ECSSG-------GGGGG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch-HHHHHhhcCCeeEEe-ecCCH-------HHHHH
Confidence 5688999999999999998877765443333222 2233322221 124556665421110 11111 12333
Q ss_pred hCC-CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeC
Q 002306 732 GAT-DRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATH 777 (938)
Q Consensus 732 ~a~-~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH 777 (938)
.+. +.++|++||.-- +++. + ...++.++. .|..||++-+
T Consensus 97 ~~~~~~dvViIDEaQF-~~~~----~-V~~l~~l~~-~~~~Vi~~Gl 136 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQF-FDGD----I-VEVVQVLAN-RGYRVIVAGL 136 (214)
T ss_dssp GCCSSCCEEEECCGGG-SCTT----H-HHHHHHHHH-TTCEEEEEEC
T ss_pred HHhcCCCEEEEECccc-CCHH----H-HHHHHHHhh-CCCEEEEEec
Confidence 333 478999999754 4443 2 144566666 5899999999
No 239
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.41 E-value=0.016 Score=64.44 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=20.4
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..-++|+||.|+||||+.|.++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999865
No 240
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.40 E-value=0.046 Score=71.54 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=65.8
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccchHHHHHHHhcCCc-hhhhh-cccchHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAG-DCQLR-GVSTFMQEMLETASI 729 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~-~~s~f~~e~~~~~~i 729 (938)
+.+|++++|.||+|+|||||+.+++....... -..|+..+...-.+. ..++|.. +++.- ...+. .++.+...-
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~---A~~lGvd~~~L~i~~~~~l-eei~~~l~~ 804 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTG-EQALEICDA 804 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGGCEEECCSSH-HHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHH---HHHcCCChhheEEecCCcH-HHHHHHHHH
Confidence 46789999999999999999999876544321 123444443322221 3445532 11111 11121 223222221
Q ss_pred HHhCCCCcEEEEeCCCCCCC-h------h------hHHHHHHHHHHH---HHhcCCCeEEEEeCC
Q 002306 730 LKGATDRSLIIIDELGRGTS-T------Y------DGFGLAWAICEH---LVEEIRAPTLFATHF 778 (938)
Q Consensus 730 l~~a~~~slvllDEp~~gtd-~------~------~~~~i~~~il~~---l~~~~~~~~l~~TH~ 778 (938)
+.....+++|++|++..-.. . . ....+ ..++.. ++++.++++|++.|-
T Consensus 805 lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~rei-s~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM-SQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHH-HHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHccCCCEEEEechhhhccccccccccCccchhHHHHHH-HHHHHHHHHHHHHcCCEEEEEecC
Confidence 22235789999999987552 1 0 11223 222333 244479999999994
No 241
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.029 Score=63.49 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+-+++.||.|+|||++.|++|.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999876
No 242
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.38 E-value=0.0065 Score=60.62 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.7
Q ss_pred ccccCCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 649 CKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 649 ~~l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
++|....+..++|+|+.||||||+.+.++-
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 456656788999999999999999998765
No 243
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.35 E-value=0.0017 Score=71.69 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+.++|+||||+||||++|.++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999874
No 244
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.34 E-value=0.034 Score=59.98 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=25.8
Q ss_pred ccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 649 CKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 649 ~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
+++... +.+++++||||+||||++..++...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 555544 8899999999999999999988643
No 245
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.32 E-value=0.0031 Score=73.91 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=26.8
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.++++...+| +.+|+|+|||||||+|.++.++
T Consensus 52 ~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3566666666 9999999999999999998665
No 246
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.23 E-value=0.054 Score=56.70 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..-++|+||.|+||||+.+.++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999876
No 247
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.19 E-value=0.0066 Score=61.59 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..|.+++|+||+||||||+.+.++.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999754
No 248
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.17 E-value=0.059 Score=54.27 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEEecCCCCchhhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~ 679 (938)
.++|+||.|+||||+++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 249
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.14 E-value=0.0075 Score=60.36 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
-.++|+||||+|||||++.++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998653
No 250
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.12 E-value=0.0045 Score=61.21 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhhH
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
++++|+|||||||||+++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999987643
No 251
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.043 Score=61.43 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+-++|.||.|+|||++.|++|.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3445689999999999999999876
No 252
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.04 E-value=0.012 Score=61.25 Aligned_cols=45 Identities=9% Similarity=-0.124 Sum_probs=28.1
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc-CCCeEEEEeCC
Q 002306 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE-IRAPTLFATHF 778 (938)
Q Consensus 733 a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~-~~~~~l~~TH~ 778 (938)
...+.++|+..+.+..+..+...+ ..+.+.+... ....+|+.||-
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhhccceEEEEEeCC
Confidence 456788888887777766555554 5555544321 13577788984
No 253
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.97 E-value=0.0063 Score=71.40 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
..|.+++|+|+|||||||++|.++...
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 568899999999999999999987743
No 254
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.88 E-value=0.0083 Score=60.64 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.5
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+++|+||+||||||+.+.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 255
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.85 E-value=0.11 Score=55.72 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhH
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
+.-++|+||.|+||||+.+.++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999987643
No 256
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.85 E-value=0.0089 Score=60.12 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEEecCCCCchhhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~ 679 (938)
.++|+||||+|||||++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998664
No 257
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.84 E-value=0.012 Score=65.81 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+.+|+|||||||||+|.+|...
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999999999763
No 258
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.84 E-value=0.077 Score=54.93 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=24.0
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
...|++++|.|+.|+|||||.-+++...
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999876543
No 259
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.83 E-value=0.057 Score=58.96 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.9
Q ss_pred CeEEEEEecCCCCchhhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+-++|+||.|+|||++.|.++.-
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 457899999999999999998753
No 260
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.064 Score=60.78 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+-++|.||.|+|||++.|++|.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3445689999999999999999876
No 261
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.71 E-value=0.014 Score=58.18 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=23.4
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
...|.+++|+|++||||||+.+.++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998763
No 262
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.70 E-value=0.08 Score=57.86 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
..++|+||.|+||||+.+.++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999999854
No 263
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.69 E-value=0.041 Score=63.66 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.-++|+||.|+|||++.|.++.
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 4589999999999999999865
No 264
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.66 E-value=0.011 Score=58.55 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.|.+++|+||+||||||+.+.++.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998763
No 265
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.60 E-value=0.11 Score=68.03 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh-hcccccccccccchHHHHHHHhcCCc-hhhhh-cccchHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAG-DCQLR-GVSTFMQEMLETASI 729 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la-q~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~-~~s~f~~e~~~~~~i 729 (938)
+..|+++.|.||.|+|||||.-+++...... ....|+..+...-.. ...++|.. +++.. ...+ ..++.+....
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~i~~~~~-~e~~l~~l~~ 455 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDT-GEQALEICDA 455 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH---HHHHcCCCHHHeEEcCCCC-HHHHHHHHHH
Confidence 3578999999999999999999887644322 223455444432222 24555542 22211 1112 2233333222
Q ss_pred HHhCCCCcEEEEeCCCCCCChh-------------hHHHHHHHHHHHH---HhcCCCeEEEEeCCh
Q 002306 730 LKGATDRSLIIIDELGRGTSTY-------------DGFGLAWAICEHL---VEEIRAPTLFATHFH 779 (938)
Q Consensus 730 l~~a~~~slvllDEp~~gtd~~-------------~~~~i~~~il~~l---~~~~~~~~l~~TH~~ 779 (938)
+.....+++|++|.+..=.... ....+ ...+..| +++.++++|++.|-.
T Consensus 456 lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~-s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM-SQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHH-HHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHH-HHHHHHHHHHHHHcCCEEEEEeecc
Confidence 2223578999999998765311 11122 2233333 334799999999863
No 266
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.56 E-value=0.099 Score=69.34 Aligned_cols=123 Identities=17% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhh-hcccccccccccchHHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMA-QVGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~la-q~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (938)
+..|+++.|.||.|+|||||..+++...... ....|+..+...-.. ...++|.. +++.-....-..++.+....+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH---HHHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 4678999999999999999999987644322 112344444322222 23455542 111111111112333333322
Q ss_pred HhCCCCcEEEEeCCCCCCChh-------------hHHHHHHHHHHHH---HhcCCCeEEEEeCCh
Q 002306 731 KGATDRSLIIIDELGRGTSTY-------------DGFGLAWAICEHL---VEEIRAPTLFATHFH 779 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gtd~~-------------~~~~i~~~il~~l---~~~~~~~~l~~TH~~ 779 (938)
.....+++|++|.+..-.... ....+ ...+..| +++.++++|++.|-.
T Consensus 457 v~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~i-s~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 457 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM-SQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHH-HHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHH-HHHHHHHHHHHHHcCCeEEEEeecc
Confidence 223578999999987655211 11223 2333444 445899999999863
No 267
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.56 E-value=0.011 Score=65.34 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=27.4
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
+++++....+.+++|+|+||+||||+++.++..
T Consensus 47 ~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 47 DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 355555677899999999999999999998764
No 268
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.51 E-value=0.038 Score=60.32 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.7
Q ss_pred CeEEEEEecCCCCchhhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..-++|+||.|+|||++.|.++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999998753
No 269
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.47 E-value=0.037 Score=58.66 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
...-++|+||.|+||||+.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999998764
No 270
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.45 E-value=0.038 Score=62.02 Aligned_cols=126 Identities=16% Similarity=0.042 Sum_probs=61.1
Q ss_pred CCeEEEE--EecCCCCchhhhhhhhhhHhhh------h-ccccccccc--ccchHHHHHHHhcCCchhhhhcccchHHHH
Q 002306 655 KSWFQII--TGPNMGGKSTFIRQVGVNILMA------Q-VGSFVPCDR--ASISVRDCIFARVGAGDCQLRGVSTFMQEM 723 (938)
Q Consensus 655 ~~~~~~i--tGpNg~GKSTllr~i~~~~~la------q-~g~~vp~~~--~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 723 (938)
.+..++| +||.|+||||+++.++....-. . ...++.+.. ....++..++..+|.... ..+.+ ...-.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~~~~~ 126 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ-VRGAP-ALDIL 126 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC-CTTCC-HHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCC-HHHHH
Confidence 3567888 9999999999999987532211 1 112333322 112344555555553211 00111 11112
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChh-hHHHHHHHHHHHHHhc------CCCeEEEEeCChHHH
Q 002306 724 LETASILKGATDRSLIIIDELGRGTSTY-DGFGLAWAICEHLVEE------IRAPTLFATHFHELT 782 (938)
Q Consensus 724 ~~~~~il~~a~~~slvllDEp~~gtd~~-~~~~i~~~il~~l~~~------~~~~~l~~TH~~el~ 782 (938)
..+...+.....+-+|++||.-.-.+.. ........+++.+.+. .+..+|++|...++.
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~ 192 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRAL 192 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHH
T ss_pred HHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHH
Confidence 2333334333567899999973311100 0112224444444321 234577777766654
No 271
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.41 E-value=0.039 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=19.9
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.-++|+||.|+|||++.|.++.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34579999999999999998865
No 272
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.29 E-value=0.059 Score=54.48 Aligned_cols=26 Identities=27% Similarity=0.150 Sum_probs=21.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
++...++|.||.|+||||+..+++..
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 34457899999999999999887653
No 273
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.29 E-value=0.018 Score=70.99 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=25.5
Q ss_pred cccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 650 KLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 650 ~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.+....+..++|+||+|+||||+.|.++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3444567789999999999999999998753
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.23 E-value=0.016 Score=56.48 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|+||.||||||+.+.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998754
No 275
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.17 E-value=0.062 Score=61.48 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..++|+||.|+||||+.+.++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998763
No 276
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.17 E-value=0.019 Score=58.44 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
...|.+++|+|++||||||+.+.++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999998753
No 277
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.10 E-value=0.067 Score=59.17 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..++|+||.|+||||+++.++..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 278
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.07 E-value=0.021 Score=64.00 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=22.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..|..++|+|+||+|||||++++..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 5678999999999999999999876
No 279
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.1 Score=58.70 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+-++|.||.|+|||++.|++|.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHH
Confidence 3445699999999999999999876
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.97 E-value=0.02 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.422 Sum_probs=20.3
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+||.||||||+.|.++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
No 281
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.95 E-value=0.022 Score=59.20 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+.+++|+|++||||||+.+.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999998764
No 282
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.85 E-value=0.074 Score=66.12 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=50.9
Q ss_pred eEEEEEecCCCCchhhhhhhhhhHhhhhcccccccc--cccchHH--HHHHHhcCCchhhhhcccchHHHHHHHHHHHHh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD--RASISVR--DCIFARVGAGDCQLRGVSTFMQEMLETASILKG 732 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~--~~~~~~~--d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 732 (938)
.-++|+||+|+||||+++.++....-. .+|.. ...+-.+ ..+.. |. .....+...+.++..-+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~----~~p~~l~~~~~~~l~~~~l~~--g~-----~~~g~~~~~l~~~~~~~~~ 260 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKG----DVPEGLKGKRIVSLQMGSLLA--GA-----KYRGEFEERLKAVIQEVVQ 260 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHT----CSCTTSTTCEEEEECC------------------CHHHHHHHHHHHHHT
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcC----CCchhhcCCeEEEeehHHhhc--cC-----ccchHHHHHHHHHHHHHHh
Confidence 457899999999999999988644221 11111 0000000 00100 00 0011222233333333333
Q ss_pred CCCCcEEEEeCCCCCC---ChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 733 ATDRSLIIIDELGRGT---STYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 733 a~~~slvllDEp~~gt---d~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
...+.++++||.-.-. +...+..+ ..++..+.+..+..+|.+|...+...
T Consensus 261 ~~~~~iL~IDEi~~l~~~~~~~g~~~~-~~~L~~~l~~~~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 261 SQGEVILFIDELHTVVGAGKAEGAVDA-GNMLKPALARGELRLIGATTLDEYRE 313 (854)
T ss_dssp TCSSEEEEECCC--------------------HHHHHTTCCCEEEEECHHHHHH
T ss_pred cCCCeEEEEecHHHHhccCCccchHHH-HHHHHHHHhCCCeEEEEecCchHHhh
Confidence 3467899999985422 11111233 23333333435677888887766543
No 283
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.84 E-value=0.092 Score=58.11 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.-++|+||.|+||||+.|.++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45889999999999999998763
No 284
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.16 Score=57.70 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.8
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+-++|.||.|+|||++.|++|.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4456789999999999999999876
No 285
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.80 E-value=0.059 Score=62.92 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.8
Q ss_pred CeEEEEEecCCCCchhhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
...++|+||.|+||||+++.++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998753
No 286
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.79 E-value=0.028 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+|+.||||||+.+.++-
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998764
No 287
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.68 E-value=0.18 Score=55.27 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=58.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhh-hc---ccch-HHHHHHHHHHHH
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQL-RG---VSTF-MQEMLETASILK 731 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~-~~---~s~f-~~e~~~~~~il~ 731 (938)
..++++||.|.||||+.+.++....-.......|+... ..+..+...-. .|-.. .+ .+.. ..+++++..-+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c--~~c~~~~~~~~-~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHC--RGCQLMQAGTH-PDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCS--HHHHHHHHTCC-TTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCC--HHHHHHhcCCC-CCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 46899999999999999988764322111112233221 11222222111 11000 00 0111 223333332222
Q ss_pred h---CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc-CCCeEEEEeCChH
Q 002306 732 G---ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE-IRAPTLFATHFHE 780 (938)
Q Consensus 732 ~---a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~-~~~~~l~~TH~~e 780 (938)
. ..++.++|+||.-.-+ ..+. .++++.+.+- .++.+|++|++.+
T Consensus 102 ~~~~~~~~kvviIdead~l~----~~a~-naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLT----DAAA-NALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBC----HHHH-HHHHHHHTSCCTTEEEEEEESCGG
T ss_pred hccccCCcEEEEECchhhcC----HHHH-HHHHHHhcCCCCCeEEEEEeCChH
Confidence 1 2357899999975433 2222 5667776542 2456777888864
No 288
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.67 E-value=0.026 Score=62.42 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+.+++|+|++|||||||++.++..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998764
No 289
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.67 E-value=0.066 Score=58.22 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=19.7
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+++.||.|+||||+.+.++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHH
Confidence 35788889999999999999865
No 290
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.65 E-value=0.024 Score=59.71 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+||+||||||+-+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998864
No 291
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.61 E-value=0.023 Score=59.70 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+.+++|+||+||||||+.+.++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
No 292
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.60 E-value=0.028 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+|++||||||+.+.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 293
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.57 E-value=0.19 Score=55.44 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+..++|+||.|+||||+.+.++..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998764
No 294
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.56 E-value=0.048 Score=60.61 Aligned_cols=25 Identities=12% Similarity=0.103 Sum_probs=21.6
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+..++|+||.|+||||+++.++..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
No 295
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.54 E-value=0.077 Score=59.50 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.3
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..-++|+||.|+|||++.+.++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 296
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.50 E-value=0.027 Score=55.86 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=20.5
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+||.||||||+.+.++-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998764
No 297
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.50 E-value=0.19 Score=66.65 Aligned_cols=124 Identities=16% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHhhhh-cccccccccccchHHHHHHHhcCCc-hhhhhcccchHHHHHHHHHHH
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNILMAQ-VGSFVPCDRASISVRDCIFARVGAG-DCQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~laq-~g~~vp~~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 730 (938)
+.+|++++|.|++|+|||||+.+++....... -..|+..+...-.+. ..++|.. +++.-....-..++.+....+
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~---A~rlG~~~~~l~i~~~~~i~~i~~~~r~l 805 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHH---HHHcCCCccceEEecCCCHHHHHHHHHHH
Confidence 45789999999999999999999987554321 123444443222221 3455632 222111111123333333332
Q ss_pred HhCCCCcEEEEeCCCCCCC-h---------hh---HHHHH--HHHHHHHHhcCCCeEEEEeCCh
Q 002306 731 KGATDRSLIIIDELGRGTS-T---------YD---GFGLA--WAICEHLVEEIRAPTLFATHFH 779 (938)
Q Consensus 731 ~~a~~~slvllDEp~~gtd-~---------~~---~~~i~--~~il~~l~~~~~~~~l~~TH~~ 779 (938)
..-..+++|++|....=.. + .. ...++ ..-+..++++.+++||++.|-.
T Consensus 806 ~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~ 869 (2050)
T 3cmu_A 806 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (2050)
T ss_dssp HHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred hhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 2224789999999553322 1 00 11221 1234456666899999999963
No 298
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.49 E-value=0.19 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...++|+||.|+||||+++.++.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999865
No 299
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.42 E-value=0.083 Score=53.75 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=53.8
Q ss_pred CCCeEEEEEecCCCCchh-hhhhhhhhHhhhhc--ccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHH
Q 002306 654 GKSWFQIITGPNMGGKST-FIRQVGVNILMAQV--GSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASIL 730 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKST-llr~i~~~~~laq~--g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il 730 (938)
..|.+.+||||-|||||| +|+.+-.. ..+.. ..+-|+...+.+ ...|.+|+|..-.... .+.. ..+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~-~~~g~kvli~kp~~D~R~~-~~~I~Sr~G~~~~a~~-v~~~-------~di~ 95 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRG-IYAKQKVVVFKPAIDDRYH-KEKVVSHNGNAIEAIN-ISKA-------SEIM 95 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHH-HHTTCCEEEEEEC------------CBTTBCCEEEE-ESSG-------GGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH-HHcCCceEEEEeccCCcch-hhhHHHhcCCceeeEE-eCCH-------HHHH
Confidence 468999999999999999 77775322 22221 123343332222 2356677774322110 0000 0111
Q ss_pred Hh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 002306 731 KG-ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHF 778 (938)
Q Consensus 731 ~~-a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~ 778 (938)
.. ..+.++|++||-=- +++ .+ ...+..+++ .|.+|+++-=+
T Consensus 96 ~~i~~~~dvV~IDEaQF-f~~----~~-v~~l~~la~-~gi~Vi~~GLd 137 (219)
T 3e2i_A 96 THDLTNVDVIGIDEVQF-FDD----EI-VSIVEKLSA-DGHRVIVAGLD 137 (219)
T ss_dssp GSCCTTCSEEEECCGGG-SCT----HH-HHHHHHHHH-TTCEEEEEEES
T ss_pred HHHhcCCCEEEEechhc-CCH----HH-HHHHHHHHH-CCCEEEEeecc
Confidence 11 35778999999532 222 23 334556665 68999887443
No 300
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.41 E-value=0.032 Score=59.94 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=21.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+.+++|+||+||||||+.+.++-
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998753
No 301
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.34 E-value=0.029 Score=55.49 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+||+||||||+++.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5889999999999999998764
No 302
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.29 E-value=0.026 Score=55.42 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
.++|+||+||||||+.+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999864
No 303
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.23 E-value=0.095 Score=59.90 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.9
Q ss_pred CeEEEEEecCCCCchhhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..-++|+||.|+|||++.+.++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998763
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.21 E-value=0.029 Score=56.15 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.9
Q ss_pred eEEEEEecCCCCchhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQV 676 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i 676 (938)
+.++|+||+|+||||+++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999975
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.19 E-value=0.033 Score=54.65 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+||+||||||+.+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999998764
No 306
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.08 E-value=0.033 Score=54.11 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.1
Q ss_pred eEEEEEecCCCCchhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQV 676 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i 676 (938)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999976
No 307
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.01 E-value=0.034 Score=57.69 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.-+++|+||+||||||+.+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
No 308
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.94 E-value=0.12 Score=55.77 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEecCCCCchhhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~ 679 (938)
.++|+||.|+||||+.+.++..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.92 E-value=0.041 Score=54.27 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+|+.||||||+.+.++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 456889999999999999998763
No 310
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.83 E-value=0.043 Score=53.68 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=20.5
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
++..++|+|++|+|||||++.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999754
No 311
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.71 E-value=0.041 Score=53.31 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
..++|+|++|+|||||++.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999754
No 312
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.63 E-value=0.04 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=16.3
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+|+.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998753
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.62 E-value=0.051 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=20.9
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+++|+|+.||||||+.+.++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998765
No 314
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.55 E-value=0.043 Score=55.01 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.0
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|+|+.||||||+.+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998765
No 315
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.53 E-value=0.027 Score=61.96 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=24.9
Q ss_pred CccccCCCCeE--EEEEecCCCCchhhhhhhhhh
Q 002306 648 DCKLIRGKSWF--QIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 648 ~~~l~~~~~~~--~~itGpNg~GKSTllr~i~~~ 679 (938)
.+++.+.+|++ ++|+||+|+||||+.|.++..
T Consensus 14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44444455655 999999999999999998754
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.48 E-value=0.053 Score=53.99 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.2
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+||.||||||+.+.++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998764
No 317
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.46 E-value=0.28 Score=59.80 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+-++|.||.|+|||++.|.+|.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999875
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.42 E-value=0.049 Score=54.03 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+|+.||||||+.+.++-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998753
No 319
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.36 E-value=0.044 Score=59.29 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.0
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+|+||+|||||++.+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 345899999999999999999865
No 320
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.29 E-value=0.054 Score=54.58 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.8
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+|+.||||||+.+.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999865
No 321
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.28 E-value=0.063 Score=59.46 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=29.4
Q ss_pred CccccCCCCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 648 DCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 648 ~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
|+.+.+..|+.++|+||+|+||||++++++..+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 677778899999999999999999999987654
No 322
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.27 E-value=0.054 Score=54.39 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.2
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.|.+++|+|+.||||||+.+.++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999998764
No 323
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.18 E-value=0.17 Score=59.52 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=62.6
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh---hHhhh--hcccccccccc----cchHHHHHHHhcCCchh--hhhcccchHHHH
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV---NILMA--QVGSFVPCDRA----SISVRDCIFARVGAGDC--QLRGVSTFMQEM 723 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~---~~~la--q~g~~vp~~~~----~~~~~d~i~~~~~~~d~--~~~~~s~f~~e~ 723 (938)
...+++|+|+-|.|||||.+.++. -.+-. ....||..... ...+...|+..++.... ........ ..
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~--~~ 228 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHV--TS 228 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTC--CH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccc--cH
Confidence 357999999999999999998874 11111 23344543332 23445567777765422 11111110 11
Q ss_pred HHHHHHH-Hh-CCC-CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 724 LETASIL-KG-ATD-RSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 724 ~~~~~il-~~-a~~-~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
.++...+ .. ..+ +-||+||-.-. .+ .+.|. ...|+.||++|-+..++.
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~~----~~--~~~~~------~~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVVQ----EE--TIRWA------QELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECC----HH--HHHHH------HHTTCEEEEEESBGGGGG
T ss_pred HHHHHHHHHHHcCCCcEEEEEECCCC----ch--hhccc------ccCCCEEEEEcCCHHHHH
Confidence 1222222 22 344 78999997633 11 12122 115899999999876543
No 324
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.17 E-value=0.07 Score=52.82 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+++|+|+.||||||+.+.++-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
No 325
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.15 E-value=0.059 Score=54.44 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+|+.||||||+.+.++-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999998864
No 326
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.11 E-value=0.07 Score=53.49 Aligned_cols=114 Identities=22% Similarity=0.210 Sum_probs=57.1
Q ss_pred cccCCccccCCCCeEEEEEecCCCCchh-hhhhhhhhHhhhhc-cc-ccccccccchHHHHHHHhcCCch--hhhhcccc
Q 002306 644 FIPNDCKLIRGKSWFQIITGPNMGGKST-FIRQVGVNILMAQV-GS-FVPCDRASISVRDCIFARVGAGD--CQLRGVST 718 (938)
Q Consensus 644 ~v~n~~~l~~~~~~~~~itGpNg~GKST-llr~i~~~~~laq~-g~-~vp~~~~~~~~~d~i~~~~~~~d--~~~~~~s~ 718 (938)
.||..... .|++..|+||-|||||| ||+.+... ..+.. .. +-|+-..+.+ +.+.+++|..- ........
T Consensus 11 ~~~~~~~~---~g~l~fiyG~MgsGKTt~Ll~~i~n~-~~~~~kvl~~kp~~D~R~~--~~i~S~~g~~~~A~~~~~~~d 84 (195)
T 1w4r_A 11 LVPRGSKT---RGQIQVILGPMFSGKSTELMRRVRRF-QIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACLLRD 84 (195)
T ss_dssp -----------CCEEEEEEECTTSCHHHHHHHHHHHH-HHTTCCEEEEEETTCCCGG--GSCCHHHHHHSEEEEESSGGG
T ss_pred ccccCCCC---ceEEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEccccCccch--hhhhhccCCcccceecCCHHH
Confidence 45544443 47899999999999995 55555443 33322 22 2244222222 22334433110 00111122
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH
Q 002306 719 FMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781 (938)
Q Consensus 719 f~~e~~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el 781 (938)
|... . .+-++|++||.=== + + + ..+++.+.+ .|.+||++.++.++
T Consensus 85 ~~~~-------~---~~~DvIlIDEaQFf--k-~---~-ve~~~~L~~-~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 85 VAQE-------A---LGVAVIGIDEGQFF--P-D---I-VEFCEAMAN-AGKTVIVAALDGTF 129 (195)
T ss_dssp GHHH-------H---HTCSEEEESSGGGC--T-T---H-HHHHHHHHH-TTCEEEEEEESBCT
T ss_pred HHHh-------c---cCCCEEEEEchhhh--H-H---H-HHHHHHHHH-CCCeEEEEeccccc
Confidence 2211 1 24589999996322 1 2 2 344577776 79999999998654
No 327
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.07 E-value=0.13 Score=58.56 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCCchhhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..+++|+||+|+||||+...++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988764
No 328
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.05 E-value=0.057 Score=53.35 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+..++|+||.||||||+.+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998764
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.95 E-value=0.067 Score=54.11 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+.+++|+|+.||||||+.+.++-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998864
No 330
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.93 E-value=0.033 Score=56.49 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|.||+||||||+++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998764
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.87 E-value=0.058 Score=53.72 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.0
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998764
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.86 E-value=0.063 Score=53.13 Aligned_cols=21 Identities=38% Similarity=0.392 Sum_probs=19.1
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|+||.||||||+.+.++-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998765
No 333
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.85 E-value=0.055 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
-.++|+|++|+|||||++.+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999754
No 334
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.81 E-value=0.32 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.4
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+||-|+||||+++.++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999998754
No 335
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.77 E-value=0.061 Score=54.11 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|+|++||||||+.+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998765
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.70 E-value=0.058 Score=53.24 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.8
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
.++|+|++|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999765
No 337
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.60 E-value=0.26 Score=51.75 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=20.1
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.-++|+||.|+|||++.|.++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46889999999999999998753
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.58 E-value=0.083 Score=53.07 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=21.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
....+++|+|+.||||||+.+.++-
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998753
No 339
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.33 E-value=0.1 Score=59.09 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=25.9
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
|....+......+++|+|++||||||+.+.++.
T Consensus 248 p~~~~~~~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 248 PESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp STTSCSCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCccccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444445445678999999999999999998653
No 340
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.27 E-value=0.091 Score=61.34 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.6
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...-++|.|..|||||++|+.+..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999754
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.26 E-value=0.081 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=20.9
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+|+.||||||+.+.++-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998764
No 342
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.21 E-value=0.075 Score=57.09 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=18.0
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+||.||||||+.+.++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998765
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.08 E-value=0.086 Score=55.55 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+|+.||||||+.+.++-
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999998764
No 344
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.07 E-value=0.082 Score=51.89 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+|++||||||++..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988654
No 345
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.04 E-value=0.3 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.0
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.-++|+||.|+|||++.|.++.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHH
Confidence 34688999999999999999865
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.92 E-value=0.076 Score=51.70 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+|+.||||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998764
No 347
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.89 E-value=0.37 Score=49.52 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..|.+++|.|+.||||||+.+.++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998865
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.80 E-value=0.093 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+||.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998764
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.75 E-value=0.095 Score=53.82 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.3
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+||.||||||+.+.++-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998763
No 350
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=90.73 E-value=0.91 Score=50.02 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=21.9
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+++++.+ .++|+|++||||||+|+.+.+.
T Consensus 28 ~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 28 PTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp ----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 35555544 7899999999999999998764
No 351
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.72 E-value=0.089 Score=52.14 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.0
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998765
No 352
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.65 E-value=0.11 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.5
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
|.+.+++||.|+||||++..++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999855543
No 353
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.64 E-value=0.091 Score=53.34 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=18.3
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
.++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998753
No 354
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.57 E-value=0.1 Score=53.28 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.9
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+||.||||||+.+.++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998764
No 355
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.52 E-value=0.087 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+|+.||||||+-+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.31 E-value=0.1 Score=50.54 Aligned_cols=21 Identities=24% Similarity=0.082 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
.++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998764
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.26 E-value=0.12 Score=51.95 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.7
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+||.||||||+.+.++-
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999998764
No 358
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.17 E-value=0.19 Score=57.90 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCchhhhhhhhhhH
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.-++|+||+|+||||+.+.++...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999987643
No 359
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.17 E-value=0.11 Score=52.89 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=17.8
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
.++|+||.||||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999875
No 360
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.08 E-value=0.28 Score=52.68 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEEecCCCCchhhhhhhhhh
Q 002306 659 QIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 659 ~~itGpNg~GKSTllr~i~~~ 679 (938)
++|+||.|+||||+.+.++..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 361
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.00 E-value=0.079 Score=53.08 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=24.2
Q ss_pred cCCccccCCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 646 PNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 646 ~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++++..... .++|+|++|+|||||++.+..
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 34556654444 578999999999999998753
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.94 E-value=0.11 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.291 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998764
No 363
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=89.84 E-value=0.6 Score=55.08 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=58.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhhHh--hhhc--c-ccccccccc----chHHHHHHHhcCCchhh-hhcccchHHHH
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVNIL--MAQV--G-SFVPCDRAS----ISVRDCIFARVGAGDCQ-LRGVSTFMQEM 723 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~~~--laq~--g-~~vp~~~~~----~~~~d~i~~~~~~~d~~-~~~~s~f~~e~ 723 (938)
+..++++|+||-|.||||+.+.++.-.- -.+. + .++...... +..+..+...++..... .........-.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAK 224 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHH
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHH
Confidence 3467999999999999999998754211 1111 1 223222211 11122223333321110 01112222222
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHH
Q 002306 724 LETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHEL 781 (938)
Q Consensus 724 ~~~~~il~~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el 781 (938)
..+...+.....+-||+||..-. .. .++.+. .++.+|++|.+...
T Consensus 225 ~~l~~~l~~~~~~~LLVLDdv~~------~~-----~l~~l~--~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 225 DRLRILMLRKHPRSLLILDDVWD------SW-----VLKAFD--SQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECC------HH-----HHHTTC--SSCEEEEEESCGGG
T ss_pred HHHHHHHccCCCCeEEEEeCCCC------HH-----HHHHhc--CCCeEEEECCCcHH
Confidence 33344444434688999998732 11 233342 58899999988654
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.74 E-value=0.13 Score=53.75 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=20.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
....+++|+|+.||||||+-+.++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3345899999999999999998754
No 365
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.70 E-value=0.28 Score=58.33 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+||.|+||||+++.+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999987654
No 366
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.66 E-value=0.13 Score=51.02 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=19.0
Q ss_pred CCccccCCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 647 NDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 647 n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+++++..... .++|+|++|+|||||++.+..
T Consensus 15 ~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 15 ASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4666654443 678999999999999998754
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.66 E-value=0.12 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.107 Sum_probs=20.3
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+++|||+.||||||+.+.++.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998764
No 368
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.39 E-value=0.56 Score=57.30 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhH
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.+.-++|+||.|+||||+.+.++...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34567999999999999999987643
No 369
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.39 E-value=0.15 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.5
Q ss_pred CCeEEEEEecCCCCchhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~ 677 (938)
...+++|+|+.||||||+.+.++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999886
No 370
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.35 E-value=0.33 Score=55.30 Aligned_cols=29 Identities=24% Similarity=0.054 Sum_probs=24.1
Q ss_pred CCCCeEEEEEecCCCCchhhhhhhhhhHh
Q 002306 653 RGKSWFQIITGPNMGGKSTFIRQVGVNIL 681 (938)
Q Consensus 653 ~~~~~~~~itGpNg~GKSTllr~i~~~~~ 681 (938)
...|+..+|.||+|+|||||++.++....
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 34678899999999999999998876443
No 371
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.34 E-value=0.14 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+|+.||||||+-+.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998764
No 372
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.26 E-value=0.16 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=20.9
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+||.||||||+.+.++-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998753
No 373
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.23 E-value=0.29 Score=60.77 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhhH
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
..++|+||+|+|||++.|.++...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999987654
No 374
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.15 E-value=0.15 Score=57.05 Aligned_cols=25 Identities=16% Similarity=-0.061 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhH
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
+..++|+||+||||||+++.++...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999986543
No 375
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.85 E-value=1.2 Score=44.45 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=31.6
Q ss_pred CCCcEEEEeCCCCC--CChhhHHHHHHHHHHHHHhc-CCCeEEEEeCC--hHHHHHhhh
Q 002306 734 TDRSLIIIDELGRG--TSTYDGFGLAWAICEHLVEE-IRAPTLFATHF--HELTALAHE 787 (938)
Q Consensus 734 ~~~slvllDEp~~g--td~~~~~~i~~~il~~l~~~-~~~~~l~~TH~--~el~~~~~~ 787 (938)
.+.+||||||++-. .+..+.. .+++.+.++ .+..+|+++.+ .++.+++|.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~----ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~ 173 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLE----EVISALNARPGHQTVIITGRGCHRDILDLADT 173 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHH----HHHHHHHTSCTTCEEEEECSSCCHHHHHHCSE
T ss_pred CCCCEEEEeCCCccccCCCCCHH----HHHHHHHhCcCCCEEEEECCCCcHHHHHhCcc
Confidence 56799999999652 1222222 234444442 35678889887 477788876
No 376
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.81 E-value=0.52 Score=50.84 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=54.8
Q ss_pred CeEEEEEecCCCCchhhhhhhhhhHhhhhcccccccccccchHHHHHHHhcCCchhhhhcccchHHHHHHHHHHHHh---
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKG--- 732 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~~~laq~g~~vp~~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~--- 732 (938)
...+++.||.|+||||+.+.++.- ++.+ +.....+ ..+...+ ...--.+++++...+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~-----~~~~-~~~~~d~-------~~l~~~~-----~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY-----VEKF-PPKASDV-------LEIDPEG-----ENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH-----HHTS-CCCTTTE-------EEECCSS-----SCBCHHHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh-----Cchh-hccCCCE-------EEEcCCc-----CCCCHHHHHHHHHHHhhccc
Confidence 458999999999999999987652 1100 0000110 0111110 01111223333333322
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc-CCCeEEEEeCChH
Q 002306 733 ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE-IRAPTLFATHFHE 780 (938)
Q Consensus 733 a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~-~~~~~l~~TH~~e 780 (938)
..+..++|+||+-+-+. .+ +.++++.+.+- .++.+|++|++..
T Consensus 80 ~~~~kvviIdead~lt~----~a-~naLLk~LEep~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ----QA-ANAFLKALEEPPEYAVIVLNTRRWH 123 (305)
T ss_dssp SSSSEEEEETTGGGBCH----HH-HHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred cCCceEEEeccHHHhCH----HH-HHHHHHHHhCCCCCeEEEEEECChH
Confidence 23568999999866542 23 25677777542 2566778888753
No 377
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.80 E-value=0.17 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.|.+++|.||.||||||.++.++-
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999998754
No 378
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.77 E-value=0.16 Score=54.55 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.7
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+||+||||||+.+.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998764
No 379
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.75 E-value=0.75 Score=49.82 Aligned_cols=117 Identities=7% Similarity=0.021 Sum_probs=57.4
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhhHhh-hhcc-------ccccccc--ccchHHHHHHHhcCCchhhhhcccchHHHHH
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVNILM-AQVG-------SFVPCDR--ASISVRDCIFARVGAGDCQLRGVSTFMQEML 724 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~~~l-aq~g-------~~vp~~~--~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~ 724 (938)
.+..+.|+||.|+|||++.|.++.-..- +..+ .++.+.. ..-..+..|+..+.-. ....+. . +.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~-~~~~~~--~---~~ 117 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE-NLCGDI--S---LE 117 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC-C--CCC--C---HH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC-CCCchH--H---HH
Confidence 4557899999999999999998753321 1111 0112111 1112344455544221 111111 1 11
Q ss_pred HHHHHHHh----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc-CCCeEEEEeCChHH
Q 002306 725 ETASILKG----ATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEE-IRAPTLFATHFHEL 781 (938)
Q Consensus 725 ~~~~il~~----a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~-~~~~~l~~TH~~el 781 (938)
.+...+.. ...+-+++|||.-.=. ...+...+++..... ....+|.++..+++
T Consensus 118 ~L~~~f~~~~~~~~~~~ii~lDE~d~l~----~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 118 ALNFYITNVPKAKKRKTLILIQNPENLL----SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCGGGSCEEEEEEECCSSSC----CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHhhhccCCceEEEEecHHHhh----cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 22222322 2456799999986644 233446666533221 23455566766543
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.59 E-value=0.17 Score=51.36 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
.++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999998764
No 381
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=88.39 E-value=0.16 Score=56.30 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
.++|+|+||+|||||++.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999998754
No 382
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.14 E-value=0.19 Score=51.85 Aligned_cols=24 Identities=21% Similarity=0.262 Sum_probs=18.7
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.|.+++|.||.||||||..+.++-
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998764
No 383
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.09 E-value=0.21 Score=51.88 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=21.4
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.|.+++|.||.||||||+++.++.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998765
No 384
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.98 E-value=0.23 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=19.7
Q ss_pred CCeEEEEEecCCCCchhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~ 677 (938)
.|..++|+||.|+||||+...++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999987654
No 385
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.97 E-value=0.25 Score=56.65 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.2
Q ss_pred CCeEEEEEecCCCCchhhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.+.-++|.||.|+||||+.+.++..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3456899999999999999998764
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.94 E-value=0.23 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.152 Sum_probs=21.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.++++|+||.||||+|.-+.++-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999988754
No 387
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.84 E-value=0.18 Score=53.35 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
..++|+|++|+|||||++.+.+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3579999999999999998754
No 388
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=87.55 E-value=0.18 Score=57.46 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=20.0
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
-.++|+|+||+|||||++.+...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998653
No 389
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.53 E-value=0.19 Score=48.94 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.6
Q ss_pred CCeEEEEEecCCCCchhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~ 677 (938)
..--++|+|++|+|||||++.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999874
No 390
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.52 E-value=0.24 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=20.8
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
|.++++.|+.||||||.++.++-
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999998764
No 391
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.48 E-value=0.22 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+..++|+|+.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998764
No 392
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.44 E-value=0.2 Score=49.13 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.-.++|+|++|+|||||++.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998753
No 393
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.30 E-value=0.21 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
-.++|+|+.|+|||||++.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998754
No 394
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.25 E-value=0.23 Score=49.86 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=22.9
Q ss_pred cccccCCccccCCCCeEEEEEecCCCCchhhhhhhhh
Q 002306 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 642 ~~~v~n~~~l~~~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...++.+..|.....--++|+|+.|+|||||++.+..
T Consensus 11 ~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 11 VDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp --------CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3456666666544445689999999999999998754
No 395
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.19 E-value=0.24 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|+||+||||||+.+.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46889999999999999998764
No 396
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.79 E-value=0.5 Score=53.41 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=20.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~ 677 (938)
...++.+|.|+-||||||+++..+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHh
Confidence 456799999999999999998765
No 397
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.73 E-value=0.28 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.5
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
+.+++|.|+-||||||+.+.++-
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999998764
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.59 E-value=0.24 Score=54.08 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.7
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+||+||||||+.+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4899999999999999988764
No 399
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.46 E-value=0.27 Score=46.56 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.3
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++++|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998753
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.45 E-value=0.29 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+..++|+|+.||||||+.+.++-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 401
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.37 E-value=0.2 Score=55.60 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhhhh
Q 002306 659 QIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 659 ~~itGpNg~GKSTllr~i~~ 678 (938)
++|+|++|+|||||++.+..
T Consensus 40 I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHhC
Confidence 58999999999999999643
No 402
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.35 E-value=0.25 Score=46.77 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998753
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.35 E-value=0.27 Score=53.33 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+||+||||||+-+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998764
No 404
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.22 E-value=0.26 Score=47.01 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999998754
No 405
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.10 E-value=0.32 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+.+++|.|+-||||||+.+.++-
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998764
No 406
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.07 E-value=0.26 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|+|+.||||||+.+.++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998754
No 407
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.76 E-value=1.5 Score=50.49 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=19.9
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...+++|+|++|+||||++..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999998874
No 408
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.73 E-value=0.35 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.6
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.|.++++.|+.||||||..+.++-
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998764
No 409
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.69 E-value=0.31 Score=52.43 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
..+++|+||+||||||+.+.++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46889999999999999998764
No 410
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=85.57 E-value=0.3 Score=54.60 Aligned_cols=26 Identities=35% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~~ 679 (938)
..+..++|+|+||+|||||++.+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34557899999999999999998653
No 411
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.50 E-value=0.3 Score=46.61 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999864
No 412
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=85.43 E-value=0.33 Score=46.41 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.3
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999998753
No 413
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.37 E-value=0.31 Score=46.44 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++++|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998753
No 414
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=85.37 E-value=0.31 Score=46.52 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999998754
No 415
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=85.35 E-value=0.3 Score=46.32 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999988653
No 416
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.27 E-value=0.31 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++++|+.|+|||||++.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998754
No 417
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.18 E-value=0.31 Score=46.57 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=18.3
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998753
No 418
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.17 E-value=0.31 Score=46.63 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999998753
No 419
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.16 E-value=0.37 Score=46.51 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.2
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
....++|+|+.|+|||||++.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999998753
No 420
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.15 E-value=0.31 Score=47.15 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998753
No 421
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.96 E-value=0.34 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|+||.||||+|.-+.++-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998764
No 422
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=84.87 E-value=0.33 Score=46.88 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=18.0
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 423
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=84.74 E-value=0.35 Score=47.31 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhhhh
Q 002306 659 QIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 659 ~~itGpNg~GKSTllr~i~~ 678 (938)
++|+|+.|+|||||++.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999998743
No 424
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=84.70 E-value=0.47 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=19.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.-.++|+|+.|+|||||++.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999998753
No 425
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=84.67 E-value=0.34 Score=46.60 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=18.0
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 47899999999999999864
No 426
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=84.60 E-value=0.34 Score=46.31 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.7
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999864
No 427
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.56 E-value=0.33 Score=46.93 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998753
No 428
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=84.51 E-value=0.35 Score=46.02 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.3
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998753
No 429
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.43 E-value=1.3 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEecCCCCchhhhhhhhhhH
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.++|+||.|+|||++.|.++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999988754
No 430
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=84.40 E-value=0.36 Score=47.35 Aligned_cols=22 Identities=18% Similarity=0.073 Sum_probs=18.9
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
..++|+|+.|+|||||++.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3688999999999999998643
No 431
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.27 E-value=0.48 Score=57.98 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCchhhhhhhhhhH
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.-++|+||.|+||||+.+.++...
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999987653
No 432
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.24 E-value=0.39 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=19.0
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998754
No 433
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.02 E-value=0.45 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCchhhhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+.+++|+||.|+||||+-+.+|.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988764
No 434
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.02 E-value=0.37 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.0
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999998743
No 435
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=83.92 E-value=0.4 Score=46.21 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=17.9
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999875
No 436
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=83.79 E-value=0.38 Score=47.30 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=17.7
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998754
No 437
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.77 E-value=0.21 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchhhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~ 679 (938)
-++|+||.|+||||+.+.++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999998763
No 438
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.57 E-value=0.51 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.0
Q ss_pred CCeEEEEEecCCCCchhhhhhh
Q 002306 655 KSWFQIITGPNMGGKSTFIRQV 676 (938)
Q Consensus 655 ~~~~~~itGpNg~GKSTllr~i 676 (938)
.|.-++|+|++|+||||+...+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999987764
No 439
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.51 E-value=1.9 Score=48.81 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhhhh
Q 002306 654 GKSWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 654 ~~~~~~~itGpNg~GKSTllr~i~~ 678 (938)
....+++++|++|+||||+.-.+|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999887764
No 440
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=83.39 E-value=0.43 Score=46.70 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998754
No 441
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=83.38 E-value=0.42 Score=45.55 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.3
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998754
No 442
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.35 E-value=1.6 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.3
Q ss_pred EEEEEecCCCCchhhhhhhhhhH
Q 002306 658 FQIITGPNMGGKSTFIRQVGVNI 680 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~~~ 680 (938)
.++|+||.|+|||++.|.++...
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999987643
No 443
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=83.29 E-value=0.42 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998753
No 444
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=83.26 E-value=0.42 Score=46.43 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 578999999999999998754
No 445
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=83.25 E-value=0.43 Score=47.00 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999998754
No 446
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=83.16 E-value=0.44 Score=46.39 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999998743
No 447
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.15 E-value=0.44 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.2
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
..++|+|+.|+|||||++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998754
No 448
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=83.15 E-value=3.6 Score=51.40 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=58.7
Q ss_pred CeEEEEEecCCCCchhhhhhhhhh-Hhhhh--cc-cccccccc-c-chHHHHHHH---hcCC--chhhhhcccchHHH--
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGVN-ILMAQ--VG-SFVPCDRA-S-ISVRDCIFA---RVGA--GDCQLRGVSTFMQE-- 722 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~~-~~laq--~g-~~vp~~~~-~-~~~~d~i~~---~~~~--~d~~~~~~s~f~~e-- 722 (938)
.++++|.||-|.|||||.+.++.- .+..+ .| .++..... . ..+...+.. .++. ......+ +.....
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~-~~ip~~le 228 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIH 228 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCC-SSHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccc-cCCCCCHH
Confidence 579999999999999999988632 11222 22 23333221 1 122223322 2210 0000000 011111
Q ss_pred --HHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCeEEEEeCChHHHH
Q 002306 723 --MLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (938)
Q Consensus 723 --~~~~~~il~-~a~~~slvllDEp~~gtd~~~~~~i~~~il~~l~~~~~~~~l~~TH~~el~~ 783 (938)
..++...+. ...++-||+||-.-. . ..++.+. .|+.+|++|-+...+.
T Consensus 229 eL~e~Lr~lL~~l~~KRvLLVLDDVwd------~-----eqLe~f~--pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 229 SIQAELRRLLKSKPYENCLLVLLNVQN------A-----KAWNAFN--LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHHHHHHHHHHSTTSSCEEEEESCCC------H-----HHHHHHH--SSCCEEEECSCSHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCcCh------H-----HHHHhhC--CCeEEEEeccChHHHH
Confidence 122333332 246788999997643 1 1223343 5899999999977664
No 449
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=83.10 E-value=0.45 Score=45.84 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=19.0
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3588999999999999998754
No 450
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=83.03 E-value=0.49 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=20.0
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...++|+|+.|+||||++..++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998764
No 451
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=83.01 E-value=0.45 Score=50.41 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
-.++|+|++|+|||||++.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999864
No 452
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=82.99 E-value=0.44 Score=46.61 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998754
No 453
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=82.95 E-value=0.44 Score=46.74 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++++|+.|+|||||++.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999998754
No 454
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=82.87 E-value=0.45 Score=45.20 Aligned_cols=20 Identities=20% Similarity=0.492 Sum_probs=17.9
Q ss_pred EEEEecCCCCchhhhhhhhh
Q 002306 659 QIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 659 ~~itGpNg~GKSTllr~i~~ 678 (938)
++|+|+.|+|||||++.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999998754
No 455
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=82.76 E-value=0.44 Score=47.37 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=18.1
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
.++|+|+.|+|||||++.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999874
No 456
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=82.72 E-value=0.46 Score=45.87 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999998754
No 457
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=82.38 E-value=0.47 Score=45.90 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999998753
No 458
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.35 E-value=0.55 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
.+++|.||.|+||||+.+.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5789999999999999988764
No 459
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=82.28 E-value=0.55 Score=47.51 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
|.+++|-|+-||||||.++.++-
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999998764
No 460
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=82.28 E-value=0.48 Score=46.05 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=18.1
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999875
No 461
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.19 E-value=0.51 Score=45.77 Aligned_cols=20 Identities=30% Similarity=0.132 Sum_probs=18.1
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 57899999999999999875
No 462
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=82.10 E-value=0.5 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.2
Q ss_pred CeEEEEEecCCCCchhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~ 677 (938)
..-++|+|+.||||||++|++-
T Consensus 33 ~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHH
Confidence 3467899999999999999984
No 463
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.03 E-value=2.4 Score=42.30 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
+++|-|+-||||||.++.++-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567889999999999998764
No 464
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=81.92 E-value=0.52 Score=46.86 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999998754
No 465
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=81.90 E-value=0.5 Score=46.87 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998753
No 466
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.83 E-value=0.53 Score=45.46 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999998744
No 467
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=81.80 E-value=0.55 Score=46.28 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999998754
No 468
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=81.71 E-value=0.51 Score=46.29 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.5
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998654
No 469
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=81.67 E-value=0.74 Score=45.23 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.1
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999998754
No 470
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.57 E-value=0.55 Score=47.04 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999998654
No 471
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=81.56 E-value=0.53 Score=45.69 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999988653
No 472
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=81.54 E-value=0.53 Score=45.93 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.--++|+|+.|+|||||++.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998754
No 473
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=81.51 E-value=0.53 Score=46.26 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999998753
No 474
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.49 E-value=0.58 Score=46.13 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=18.9
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3578999999999999998754
No 475
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=81.47 E-value=0.55 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.1
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998754
No 476
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=81.44 E-value=0.55 Score=46.44 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
++.|+|+.|||||||-.+++.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHh
Confidence 368999999999999998753
No 477
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=81.41 E-value=0.56 Score=46.01 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999998754
No 478
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=81.30 E-value=0.57 Score=46.64 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=18.0
Q ss_pred EEEEEecCCCCchhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~ 677 (938)
-++|+|+.|+|||||++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 57899999999999999874
No 479
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=81.11 E-value=0.61 Score=47.26 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=19.8
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
...++|+|+.|+|||||+..++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35788999999999999998764
No 480
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.00 E-value=0.59 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 478999999999999998754
No 481
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.77 E-value=0.61 Score=45.64 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.-.++|+|+.|+|||||++.+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999998753
No 482
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=80.68 E-value=0.7 Score=44.69 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=18.7
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999988653
No 483
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=80.63 E-value=0.62 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=19.6
Q ss_pred CeEEEEEecCCCCchhhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~~ 678 (938)
.--++|+|+.|+|||||++.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHh
Confidence 34589999999999999998754
No 484
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=80.44 E-value=0.6 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.2
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999998754
No 485
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.39 E-value=0.64 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCchhhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGVN 679 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~~ 679 (938)
.-++|+||.|+||||+.|.++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998753
No 486
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=80.36 E-value=0.66 Score=46.19 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998754
No 487
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=80.33 E-value=0.61 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998754
No 488
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=80.32 E-value=0.61 Score=45.88 Aligned_cols=21 Identities=33% Similarity=0.238 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999998753
No 489
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=80.17 E-value=0.65 Score=51.20 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|..||||||++|++.+
T Consensus 11 k~lllG~~~sGKsT~~kq~~~ 31 (354)
T 2xtz_A 11 KLLLLGAGESGKSTIFKQIKL 31 (354)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999864
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=80.09 E-value=0.66 Score=46.57 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=19.1
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999998754
No 491
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=79.93 E-value=0.65 Score=46.01 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998653
No 492
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.91 E-value=0.72 Score=46.39 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=17.0
Q ss_pred eEEEEEecCCCCchhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQV 676 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i 676 (938)
-++++||+.|+|||++....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 37899999999999997554
No 493
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=79.91 E-value=0.67 Score=45.63 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999998754
No 494
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=79.89 E-value=0.57 Score=45.53 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=9.1
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998753
No 495
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=79.82 E-value=0.66 Score=45.50 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.8
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3579999999999999998643
No 496
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=79.80 E-value=0.66 Score=45.55 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.0
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999998754
No 497
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=79.61 E-value=0.62 Score=46.87 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998753
No 498
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.58 E-value=0.67 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.0
Q ss_pred eEEEEEecCCCCchhhhhhhhh
Q 002306 657 WFQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 657 ~~~~itGpNg~GKSTllr~i~~ 678 (938)
--++|+|+.|+|||||++.+..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999998754
No 499
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=79.57 E-value=0.69 Score=45.70 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.2
Q ss_pred CeEEEEEecCCCCchhhhhhhh
Q 002306 656 SWFQIITGPNMGGKSTFIRQVG 677 (938)
Q Consensus 656 ~~~~~itGpNg~GKSTllr~i~ 677 (938)
.--++|+|+.|+|||||++.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999999874
No 500
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=79.56 E-value=0.71 Score=44.59 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhhhh
Q 002306 658 FQIITGPNMGGKSTFIRQVGV 678 (938)
Q Consensus 658 ~~~itGpNg~GKSTllr~i~~ 678 (938)
-++|+|+.|+|||||++.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998754
Done!