Query 002307
Match_columns 938
No_of_seqs 542 out of 3738
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 21:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 5E-96 1E-100 816.4 40.3 438 417-896 296-735 (752)
2 KOG0731 AAA+-type ATPase conta 100.0 2.7E-94 5.8E-99 846.4 40.3 732 39-914 23-767 (774)
3 COG0465 HflB ATP-dependent Zn 100.0 6.7E-92 1.5E-96 815.2 45.6 460 404-899 129-594 (596)
4 CHL00176 ftsH cell division pr 100.0 1.3E-79 2.8E-84 729.3 51.0 457 404-897 162-627 (638)
5 PRK10733 hflB ATP-dependent me 100.0 2E-77 4.3E-82 715.8 50.2 460 403-897 130-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 1.7E-76 3.7E-81 690.1 49.1 458 402-894 32-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.3E-55 2.9E-60 478.6 25.7 256 415-678 141-397 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.9E-52 1.9E-56 512.4 27.7 308 450-799 1622-1984(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 3.3E-48 7.1E-53 445.7 24.6 252 414-676 423-677 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 5.9E-47 1.3E-51 429.3 22.9 250 417-677 503-773 (802)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 8.2E-44 1.8E-48 403.8 21.6 229 417-656 182-414 (802)
12 KOG0727 26S proteasome regulat 100.0 3.1E-43 6.7E-48 365.8 22.8 253 415-675 145-398 (408)
13 KOG0728 26S proteasome regulat 100.0 2.6E-43 5.7E-48 366.0 20.6 253 416-676 138-391 (404)
14 KOG0652 26S proteasome regulat 100.0 5.6E-43 1.2E-47 365.2 18.9 253 415-675 161-414 (424)
15 KOG0729 26S proteasome regulat 100.0 5.3E-43 1.1E-47 366.2 18.4 262 410-679 162-424 (435)
16 KOG0726 26S proteasome regulat 100.0 8.1E-43 1.8E-47 368.6 15.3 255 415-677 175-430 (440)
17 KOG0736 Peroxisome assembly fa 100.0 1.6E-41 3.5E-46 393.0 24.1 251 416-676 663-935 (953)
18 COG1223 Predicted ATPase (AAA+ 100.0 6.4E-41 1.4E-45 350.2 20.8 242 417-673 113-355 (368)
19 PTZ00454 26S protease regulato 100.0 6.5E-40 1.4E-44 372.5 27.3 253 416-676 136-389 (398)
20 KOG0738 AAA+-type ATPase [Post 100.0 1.5E-39 3.2E-44 355.2 20.7 248 415-675 202-471 (491)
21 PRK03992 proteasome-activating 100.0 1.4E-38 3.1E-43 361.3 27.0 256 416-679 122-378 (389)
22 KOG0735 AAA+-type ATPase [Post 100.0 1.9E-38 4E-43 364.6 23.6 228 418-656 660-888 (952)
23 PTZ00361 26 proteosome regulat 100.0 2.8E-38 6.2E-43 361.7 24.4 253 416-676 174-427 (438)
24 PF01434 Peptidase_M41: Peptid 100.0 1.5E-38 3.2E-43 333.8 14.6 204 662-892 1-213 (213)
25 COG0464 SpoVK ATPases of the A 100.0 4.5E-37 9.7E-42 358.8 24.9 248 416-674 233-484 (494)
26 TIGR01243 CDC48 AAA family ATP 100.0 8.7E-37 1.9E-41 371.7 26.1 249 418-676 446-713 (733)
27 TIGR01242 26Sp45 26S proteasom 100.0 4.8E-36 1E-40 337.8 26.6 250 416-673 113-363 (364)
28 KOG0737 AAA+-type ATPase [Post 100.0 1.8E-36 3.9E-41 331.4 18.8 230 414-656 81-314 (386)
29 KOG0651 26S proteasome regulat 100.0 4.3E-37 9.3E-42 328.5 13.3 251 416-674 123-374 (388)
30 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-35 3.1E-40 343.9 25.0 241 420-675 223-465 (489)
31 KOG0739 AAA+-type ATPase [Post 100.0 1.2E-36 2.7E-41 322.7 12.8 230 414-657 122-354 (439)
32 TIGR03689 pup_AAA proteasome A 100.0 4.6E-33 9.9E-38 323.1 24.2 255 415-679 172-484 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 2.6E-31 5.6E-36 306.7 20.3 239 420-677 180-420 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 2.5E-31 5.3E-36 298.5 16.0 249 418-675 212-492 (744)
35 PLN00020 ribulose bisphosphate 100.0 2.3E-30 4.9E-35 286.2 22.7 262 420-705 110-395 (413)
36 TIGR01243 CDC48 AAA family ATP 100.0 2.3E-30 4.9E-35 315.6 24.7 247 419-676 172-438 (733)
37 KOG0732 AAA+-type ATPase conta 100.0 1.1E-30 2.4E-35 315.6 19.1 251 418-679 258-531 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 3E-29 6.6E-34 282.9 15.6 247 415-675 143-406 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.8 1.1E-19 2.4E-24 199.4 19.8 211 424-654 22-255 (287)
40 TIGR02881 spore_V_K stage V sp 99.8 1.4E-19 3.1E-24 195.3 19.6 212 423-655 4-240 (261)
41 TIGR02880 cbbX_cfxQ probable R 99.8 8.4E-20 1.8E-24 200.0 17.6 210 425-655 22-255 (284)
42 KOG0742 AAA+-type ATPase [Post 99.8 1.9E-19 4.1E-24 198.5 19.0 234 421-673 351-612 (630)
43 PF00004 AAA: ATPase family as 99.8 7E-20 1.5E-24 174.4 13.1 130 461-602 1-132 (132)
44 KOG0743 AAA+-type ATPase [Post 99.8 1.4E-18 3.1E-23 195.7 16.3 212 420-645 196-412 (457)
45 KOG0744 AAA+-type ATPase [Post 99.8 6.4E-18 1.4E-22 182.7 13.7 238 424-672 141-413 (423)
46 KOG0736 Peroxisome assembly fa 99.7 1.8E-17 3.8E-22 194.3 18.1 231 427-674 403-654 (953)
47 TIGR00635 ruvB Holliday juncti 99.7 4.6E-17 9.9E-22 178.7 20.1 214 423-673 2-229 (305)
48 PRK00080 ruvB Holliday junctio 99.7 4.9E-17 1.1E-21 181.3 20.1 216 421-673 21-250 (328)
49 KOG0735 AAA+-type ATPase [Post 99.7 1E-16 2.2E-21 186.5 20.4 263 425-705 408-683 (952)
50 COG0464 SpoVK ATPases of the A 99.7 1.4E-16 3E-21 186.8 21.9 219 444-675 4-228 (494)
51 PF05496 RuvB_N: Holliday junc 99.7 2E-16 4.2E-21 166.4 18.8 192 420-651 19-227 (233)
52 TIGR02639 ClpA ATP-dependent C 99.7 4.8E-16 1E-20 190.3 17.9 221 423-675 180-431 (731)
53 COG2255 RuvB Holliday junction 99.7 1E-15 2.2E-20 164.0 17.8 218 420-677 21-255 (332)
54 TIGR00763 lon ATP-dependent pr 99.7 4.5E-16 9.7E-21 191.6 16.9 164 425-616 320-505 (775)
55 TIGR02902 spore_lonB ATP-depen 99.7 2E-15 4.4E-20 178.5 19.9 218 417-673 57-332 (531)
56 PRK11034 clpA ATP-dependent Cl 99.7 2.3E-15 5E-20 183.5 19.2 223 423-677 184-437 (758)
57 TIGR00362 DnaA chromosomal rep 99.6 9.4E-15 2E-19 167.5 20.8 241 420-705 105-358 (405)
58 PRK00149 dnaA chromosomal repl 99.6 1.1E-14 2.3E-19 169.3 19.7 220 420-674 117-350 (450)
59 TIGR02928 orc1/cdc6 family rep 99.6 3.7E-14 7.9E-19 159.4 23.2 222 422-673 12-274 (365)
60 COG2256 MGS1 ATPase related to 99.6 4.2E-15 9E-20 165.7 14.7 205 420-675 19-240 (436)
61 PRK14962 DNA polymerase III su 99.6 2.4E-14 5.2E-19 167.0 20.3 204 420-672 9-241 (472)
62 PRK14956 DNA polymerase III su 99.6 2.1E-14 4.6E-19 166.1 19.6 202 420-670 13-243 (484)
63 COG0466 Lon ATP-dependent Lon 99.6 9.4E-15 2E-19 171.7 14.6 178 425-617 323-509 (782)
64 PRK14961 DNA polymerase III su 99.6 7.1E-14 1.5E-18 158.3 20.5 209 420-671 11-242 (363)
65 KOG2004 Mitochondrial ATP-depe 99.6 6E-15 1.3E-19 172.3 11.8 197 398-618 391-598 (906)
66 PRK12323 DNA polymerase III su 99.6 2.5E-14 5.5E-19 169.3 16.7 200 420-668 11-244 (700)
67 PRK00411 cdc6 cell division co 99.6 2.2E-13 4.8E-18 154.8 23.5 224 421-673 26-282 (394)
68 PRK04195 replication factor C 99.6 4.8E-14 1E-18 165.3 18.4 208 418-670 7-222 (482)
69 PRK13342 recombination factor 99.6 1.1E-13 2.4E-18 159.2 20.7 200 421-674 8-220 (413)
70 PRK07003 DNA polymerase III su 99.6 7.8E-14 1.7E-18 166.9 19.6 199 420-667 11-238 (830)
71 PRK06645 DNA polymerase III su 99.6 1.1E-13 2.3E-18 162.5 20.2 213 420-672 16-255 (507)
72 PRK14088 dnaA chromosomal repl 99.6 7.1E-14 1.5E-18 162.1 18.4 222 419-674 99-333 (440)
73 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.2E-13 2.7E-18 144.7 18.4 205 420-670 10-225 (226)
74 PRK14960 DNA polymerase III su 99.6 1E-13 2.2E-18 164.5 19.5 202 420-670 10-240 (702)
75 TIGR03345 VI_ClpV1 type VI sec 99.6 7.4E-14 1.6E-18 173.1 19.1 216 422-670 184-428 (852)
76 PRK06893 DNA replication initi 99.5 2.1E-13 4.5E-18 145.1 19.5 212 418-670 9-227 (229)
77 PRK14958 DNA polymerase III su 99.5 9.6E-14 2.1E-18 163.4 18.5 202 420-670 11-241 (509)
78 PRK07994 DNA polymerase III su 99.5 1.5E-13 3.2E-18 164.6 20.1 202 420-670 11-241 (647)
79 PRK14949 DNA polymerase III su 99.5 2.8E-13 6E-18 164.9 20.6 193 420-651 11-226 (944)
80 PRK08691 DNA polymerase III su 99.5 1.8E-13 3.9E-18 163.6 18.1 209 420-671 11-242 (709)
81 PRK08903 DnaA regulatory inact 99.5 5E-13 1.1E-17 141.1 19.1 202 419-671 12-224 (227)
82 PRK14963 DNA polymerase III su 99.5 5.6E-13 1.2E-17 156.7 20.5 202 420-671 9-238 (504)
83 PRK14086 dnaA chromosomal repl 99.5 3.3E-13 7.1E-18 160.0 18.6 220 420-675 283-517 (617)
84 PRK12402 replication factor C 99.5 7.5E-13 1.6E-17 146.7 20.4 208 420-672 10-248 (337)
85 PRK14964 DNA polymerase III su 99.5 3.7E-13 7.9E-18 157.1 18.4 202 420-670 8-238 (491)
86 PRK10865 protein disaggregatio 99.5 1.3E-13 2.9E-18 171.1 15.6 165 423-620 176-358 (857)
87 PRK12422 chromosomal replicati 99.5 3.8E-13 8.2E-18 156.1 18.3 226 419-674 105-344 (445)
88 PRK14951 DNA polymerase III su 99.5 6.5E-13 1.4E-17 158.7 19.8 202 420-670 11-246 (618)
89 PRK08084 DNA replication initi 99.5 1.4E-12 3.1E-17 139.3 20.0 208 418-670 15-233 (235)
90 PRK07940 DNA polymerase III su 99.5 6.4E-13 1.4E-17 151.9 18.0 185 423-645 3-214 (394)
91 PRK14969 DNA polymerase III su 99.5 6.5E-13 1.4E-17 157.2 18.2 209 420-671 11-242 (527)
92 PRK10787 DNA-binding ATP-depen 99.5 3.9E-13 8.5E-18 165.2 16.7 164 425-617 322-507 (784)
93 TIGR03346 chaperone_ClpB ATP-d 99.5 4.9E-13 1.1E-17 166.4 17.6 200 423-655 171-398 (852)
94 PRK05342 clpX ATP-dependent pr 99.5 8.8E-13 1.9E-17 151.5 18.3 222 424-655 69-380 (412)
95 PHA02544 44 clamp loader, smal 99.5 1.1E-12 2.5E-17 144.8 18.6 161 417-617 13-174 (316)
96 PLN03025 replication factor C 99.5 9.7E-13 2.1E-17 146.4 18.1 200 419-669 7-219 (319)
97 TIGR02397 dnaX_nterm DNA polym 99.5 1.2E-12 2.5E-17 146.6 18.8 204 419-671 8-240 (355)
98 PRK05563 DNA polymerase III su 99.5 1.5E-12 3.2E-17 155.2 20.3 202 420-670 11-241 (559)
99 PRK13341 recombination factor 99.5 9.4E-13 2E-17 160.3 18.6 209 420-674 23-248 (725)
100 CHL00095 clpC Clp protease ATP 99.5 7.5E-13 1.6E-17 164.2 17.9 200 423-655 177-403 (821)
101 PRK14957 DNA polymerase III su 99.5 1.4E-12 3E-17 154.1 19.0 203 420-671 11-242 (546)
102 PRK08727 hypothetical protein; 99.5 3.8E-12 8.2E-17 135.9 20.5 208 419-672 13-230 (233)
103 PF05673 DUF815: Protein of un 99.5 1.5E-12 3.2E-17 138.9 16.7 196 415-648 17-244 (249)
104 PRK14952 DNA polymerase III su 99.4 1.9E-12 4.2E-17 154.1 19.0 203 420-670 8-241 (584)
105 PTZ00112 origin recognition co 99.4 2.6E-12 5.7E-17 154.4 19.8 219 422-675 752-1008(1164)
106 PRK14087 dnaA chromosomal repl 99.4 2.1E-12 4.6E-17 150.2 18.7 191 458-673 141-348 (450)
107 PRK14959 DNA polymerase III su 99.4 2.1E-12 4.5E-17 153.9 18.6 202 420-670 11-241 (624)
108 PRK07764 DNA polymerase III su 99.4 2.2E-12 4.7E-17 158.9 19.1 207 420-668 10-241 (824)
109 COG2204 AtoC Response regulato 99.4 6.8E-13 1.5E-17 152.9 12.5 284 305-668 62-386 (464)
110 PRK07133 DNA polymerase III su 99.4 4.7E-12 1E-16 152.8 19.8 208 420-670 13-240 (725)
111 PRK14970 DNA polymerase III su 99.4 5E-12 1.1E-16 143.1 18.7 209 420-671 12-231 (367)
112 PRK14965 DNA polymerase III su 99.4 3.3E-12 7.1E-17 152.8 18.0 201 420-669 11-240 (576)
113 PRK05896 DNA polymerase III su 99.4 4.8E-12 1E-16 150.1 18.8 202 420-670 11-241 (605)
114 TIGR00382 clpX endopeptidase C 99.4 4.6E-12 1E-16 145.3 17.3 219 427-655 79-386 (413)
115 PF00308 Bac_DnaA: Bacterial d 99.4 3.7E-12 8E-17 134.9 15.4 200 420-653 3-216 (219)
116 PRK14953 DNA polymerase III su 99.4 8.5E-12 1.8E-16 146.3 19.9 208 420-670 11-241 (486)
117 PRK09111 DNA polymerase III su 99.4 8.2E-12 1.8E-16 149.4 20.0 209 420-671 19-255 (598)
118 PRK08451 DNA polymerase III su 99.4 1.1E-11 2.3E-16 146.2 20.3 201 420-669 9-238 (535)
119 PRK05642 DNA replication initi 99.4 1.7E-11 3.7E-16 131.0 19.9 179 458-670 45-232 (234)
120 TIGR02640 gas_vesic_GvpN gas v 99.4 1.1E-11 2.4E-16 134.5 18.2 189 458-675 21-259 (262)
121 KOG2028 ATPase related to the 99.4 5.2E-12 1.1E-16 138.9 15.4 209 420-674 133-369 (554)
122 PRK13407 bchI magnesium chelat 99.4 2.2E-12 4.8E-17 144.5 12.9 219 420-675 3-308 (334)
123 PRK06305 DNA polymerase III su 99.4 1.2E-11 2.7E-16 143.9 19.3 203 420-671 12-244 (451)
124 PRK11034 clpA ATP-dependent Cl 99.4 1.2E-11 2.7E-16 151.2 19.8 166 426-618 459-668 (758)
125 TIGR00390 hslU ATP-dependent p 99.4 9.9E-12 2.2E-16 141.5 17.6 88 426-513 13-104 (441)
126 PRK06647 DNA polymerase III su 99.4 1.3E-11 2.7E-16 147.1 19.3 208 420-670 11-241 (563)
127 PRK14955 DNA polymerase III su 99.4 8.3E-12 1.8E-16 143.2 17.1 213 420-671 11-255 (397)
128 PRK00440 rfc replication facto 99.4 1.8E-11 3.9E-16 134.6 18.7 203 418-671 10-224 (319)
129 COG0593 DnaA ATPase involved i 99.4 2.5E-11 5.4E-16 138.3 19.7 225 418-676 80-316 (408)
130 PRK06620 hypothetical protein; 99.4 1.6E-11 3.5E-16 129.7 16.9 196 418-670 9-213 (214)
131 COG3829 RocR Transcriptional r 99.4 4.1E-12 8.9E-17 146.7 13.3 251 419-709 239-532 (560)
132 PRK05201 hslU ATP-dependent pr 99.3 1.4E-11 3E-16 140.4 16.7 88 426-513 16-107 (443)
133 KOG0989 Replication factor C, 99.3 1.1E-11 2.5E-16 134.4 14.3 194 415-651 26-236 (346)
134 COG1474 CDC6 Cdc6-related prot 99.3 7.4E-11 1.6E-15 133.9 21.0 217 425-673 17-265 (366)
135 TIGR02639 ClpA ATP-dependent C 99.3 4.5E-11 9.7E-16 146.9 20.6 202 425-653 454-711 (731)
136 PRK14948 DNA polymerase III su 99.3 4.5E-11 9.7E-16 143.9 20.0 205 420-668 11-240 (620)
137 TIGR02903 spore_lon_C ATP-depe 99.3 7.9E-11 1.7E-15 142.0 22.1 218 420-673 149-430 (615)
138 PRK14954 DNA polymerase III su 99.3 4.6E-11 1E-15 143.3 19.7 212 420-670 11-254 (620)
139 COG2812 DnaX DNA polymerase II 99.3 2.1E-11 4.5E-16 142.5 16.3 195 420-653 11-228 (515)
140 CHL00081 chlI Mg-protoporyphyr 99.3 1.1E-11 2.4E-16 139.4 13.5 225 419-676 11-325 (350)
141 PRK14950 DNA polymerase III su 99.3 7.9E-11 1.7E-15 141.3 20.1 208 420-670 11-242 (585)
142 COG1224 TIP49 DNA helicase TIP 99.3 9.8E-11 2.1E-15 129.1 18.5 99 572-673 321-432 (450)
143 TIGR01650 PD_CobS cobaltochela 99.3 1.3E-11 2.8E-16 137.3 11.7 204 458-701 64-314 (327)
144 TIGR02030 BchI-ChlI magnesium 99.3 3.3E-11 7.1E-16 135.4 15.0 218 423-676 2-312 (337)
145 cd00009 AAA The AAA+ (ATPases 99.3 7.7E-11 1.7E-15 111.8 14.7 124 457-601 18-150 (151)
146 COG3604 FhlA Transcriptional r 99.3 1.1E-10 2.4E-15 133.6 17.6 201 420-653 218-456 (550)
147 TIGR02442 Cob-chelat-sub cobal 99.2 9.7E-11 2.1E-15 141.7 15.6 214 423-675 2-306 (633)
148 PRK14971 DNA polymerase III su 99.2 4.1E-10 8.9E-15 135.6 20.4 202 420-670 12-243 (614)
149 COG2607 Predicted ATPase (AAA+ 99.2 6.8E-10 1.5E-14 117.4 18.3 196 415-648 50-276 (287)
150 TIGR00368 Mg chelatase-related 99.2 2.8E-10 6.1E-15 133.8 16.8 213 421-671 188-497 (499)
151 PHA02244 ATPase-like protein 99.2 7.5E-10 1.6E-14 124.8 18.5 157 421-612 93-269 (383)
152 COG0542 clpA ATP-binding subun 99.2 1.2E-10 2.6E-15 140.9 12.7 161 425-618 491-707 (786)
153 TIGR03345 VI_ClpV1 type VI sec 99.2 6.3E-10 1.4E-14 138.5 19.2 198 425-653 566-830 (852)
154 TIGR03346 chaperone_ClpB ATP-d 99.2 9.8E-10 2.1E-14 137.2 20.4 202 425-653 565-825 (852)
155 PRK10865 protein disaggregatio 99.2 8.3E-10 1.8E-14 137.7 19.5 164 424-618 567-781 (857)
156 PRK09087 hypothetical protein; 99.2 3E-10 6.6E-15 121.0 13.5 172 459-673 45-222 (226)
157 PRK15424 propionate catabolism 99.1 1E-10 2.2E-15 138.4 10.4 209 422-666 216-478 (538)
158 PRK09112 DNA polymerase III su 99.1 1.4E-09 3E-14 123.1 18.0 191 419-649 17-244 (351)
159 TIGR03015 pepcterm_ATPase puta 99.1 1.8E-09 4E-14 116.2 18.2 191 459-673 44-266 (269)
160 TIGR02329 propionate_PrpR prop 99.1 3.5E-10 7.5E-15 133.9 12.8 216 421-669 208-466 (526)
161 COG0714 MoxR-like ATPases [Gen 99.1 9.5E-10 2.1E-14 123.1 15.7 134 458-616 43-203 (329)
162 PRK13531 regulatory ATPase Rav 99.1 1.7E-09 3.6E-14 125.7 17.9 213 426-677 21-287 (498)
163 TIGR01817 nifA Nif-specific re 99.1 4.5E-10 9.7E-15 133.5 13.7 211 419-668 190-440 (534)
164 TIGR02974 phageshock_pspF psp 99.1 8.7E-10 1.9E-14 123.7 14.8 191 427-653 1-233 (329)
165 smart00382 AAA ATPases associa 99.1 5.1E-10 1.1E-14 104.7 10.8 128 458-603 2-147 (148)
166 CHL00095 clpC Clp protease ATP 99.1 2.6E-09 5.7E-14 133.0 20.0 167 425-618 509-734 (821)
167 PRK11608 pspF phage shock prot 99.1 1E-09 2.2E-14 122.9 14.8 195 423-653 4-240 (326)
168 PRK11388 DNA-binding transcrip 99.1 1.3E-09 2.7E-14 132.3 16.5 211 421-670 321-568 (638)
169 smart00350 MCM minichromosome 99.1 1.1E-09 2.4E-14 129.6 15.5 225 425-673 203-504 (509)
170 COG0542 clpA ATP-binding subun 99.1 1.9E-09 4.1E-14 130.6 17.3 219 421-671 166-411 (786)
171 COG1221 PspF Transcriptional r 99.1 4.1E-10 8.9E-15 128.2 10.6 200 420-654 73-310 (403)
172 PRK07471 DNA polymerase III su 99.1 3.3E-09 7.1E-14 120.6 17.6 187 419-647 13-240 (365)
173 PRK10820 DNA-binding transcrip 99.1 1.9E-09 4.1E-14 127.9 16.1 208 420-666 199-447 (520)
174 PF01078 Mg_chelatase: Magnesi 99.1 9.6E-11 2.1E-15 122.6 4.5 143 423-606 1-205 (206)
175 PRK05022 anaerobic nitric oxid 99.0 2.3E-09 5E-14 126.9 15.1 196 423-654 185-421 (509)
176 PRK09862 putative ATP-dependen 99.0 4.5E-09 9.7E-14 123.6 17.3 213 422-672 188-491 (506)
177 PF05621 TniB: Bacterial TniB 99.0 1.6E-08 3.4E-13 111.4 19.2 217 425-668 34-284 (302)
178 TIGR00764 lon_rel lon-related 99.0 1.5E-09 3.3E-14 130.7 12.4 103 570-674 267-392 (608)
179 PRK05564 DNA polymerase III su 99.0 6.2E-09 1.3E-13 115.8 16.3 169 423-636 2-182 (313)
180 KOG1942 DNA helicase, TBP-inte 99.0 1.3E-08 2.8E-13 110.0 17.3 130 517-674 296-439 (456)
181 PF07728 AAA_5: AAA domain (dy 99.0 3.4E-10 7.4E-15 110.3 4.9 113 460-594 1-139 (139)
182 TIGR00678 holB DNA polymerase 99.0 5.3E-09 1.2E-13 107.5 13.9 144 456-636 12-183 (188)
183 PRK15429 formate hydrogenlyase 99.0 6E-09 1.3E-13 127.6 16.5 199 421-653 372-609 (686)
184 TIGR02031 BchD-ChlD magnesium 99.0 5E-09 1.1E-13 125.9 15.1 190 459-674 17-259 (589)
185 PRK11331 5-methylcytosine-spec 98.9 7.3E-09 1.6E-13 119.6 14.1 159 424-602 174-357 (459)
186 PRK07399 DNA polymerase III su 98.9 2.2E-08 4.9E-13 111.8 17.4 183 423-647 2-223 (314)
187 KOG1969 DNA replication checkp 98.9 1.6E-08 3.6E-13 119.8 16.7 172 459-657 327-519 (877)
188 COG0606 Predicted ATPase with 98.9 1E-09 2.2E-14 125.8 6.4 210 421-671 175-483 (490)
189 TIGR00602 rad24 checkpoint pro 98.9 2.6E-08 5.5E-13 120.1 17.3 205 416-653 75-328 (637)
190 COG0470 HolB ATPase involved i 98.9 3.5E-08 7.6E-13 108.6 17.0 149 426-613 2-178 (325)
191 KOG0741 AAA+-type ATPase [Post 98.9 1.7E-08 3.8E-13 115.8 14.3 160 434-613 520-683 (744)
192 PF06068 TIP49: TIP49 C-termin 98.9 2.1E-08 4.5E-13 112.6 14.5 65 424-495 23-89 (398)
193 PF00158 Sigma54_activat: Sigm 98.9 9E-09 1.9E-13 105.1 10.4 122 427-580 1-143 (168)
194 COG1219 ClpX ATP-dependent pro 98.9 4.8E-09 1.1E-13 114.6 8.1 106 427-534 63-179 (408)
195 PRK04132 replication factor C 98.9 3.3E-08 7.2E-13 121.9 16.3 170 461-669 567-750 (846)
196 PRK08058 DNA polymerase III su 98.8 8.1E-08 1.8E-12 107.9 16.7 149 423-614 3-180 (329)
197 PRK05707 DNA polymerase III su 98.8 3.7E-08 8E-13 110.7 13.7 157 455-645 19-203 (328)
198 PF07724 AAA_2: AAA domain (Cd 98.8 5.7E-09 1.2E-13 106.8 6.6 112 458-582 3-131 (171)
199 TIGR02915 PEP_resp_reg putativ 98.8 4.1E-08 8.8E-13 113.8 13.1 206 423-667 137-383 (445)
200 PRK10923 glnG nitrogen regulat 98.8 5.2E-08 1.1E-12 113.7 13.7 209 423-670 136-385 (469)
201 PRK11361 acetoacetate metaboli 98.7 1.3E-07 2.8E-12 109.8 15.7 209 423-670 141-390 (457)
202 KOG0991 Replication factor C, 98.7 7.1E-08 1.5E-12 101.8 11.4 205 415-670 17-234 (333)
203 PTZ00111 DNA replication licen 98.7 2.1E-07 4.6E-12 114.7 17.3 163 425-614 450-655 (915)
204 PRK13765 ATP-dependent proteas 98.7 1.3E-07 2.9E-12 114.2 14.9 100 571-672 277-399 (637)
205 PRK08116 hypothetical protein; 98.7 8.9E-08 1.9E-12 104.7 12.1 69 458-528 114-189 (268)
206 PRK12377 putative replication 98.7 1.4E-07 3.1E-12 102.1 12.7 98 420-529 69-175 (248)
207 KOG1514 Origin recognition com 98.7 6.2E-07 1.3E-11 106.6 18.3 220 427-675 398-657 (767)
208 smart00763 AAA_PrkA PrkA AAA d 98.7 2.3E-07 5.1E-12 104.7 14.1 81 424-511 49-142 (361)
209 COG1239 ChlI Mg-chelatase subu 98.7 3.2E-07 6.8E-12 104.4 15.0 160 421-617 13-233 (423)
210 TIGR01818 ntrC nitrogen regula 98.6 2E-07 4.3E-12 108.5 13.5 211 424-670 133-381 (463)
211 PRK15115 response regulator Gl 98.6 2.8E-07 6E-12 106.8 14.6 206 426-670 135-381 (444)
212 COG1220 HslU ATP-dependent pro 98.6 2.1E-07 4.7E-12 102.6 12.5 69 426-494 16-86 (444)
213 COG3283 TyrR Transcriptional r 98.6 2.4E-07 5.1E-12 102.8 11.9 215 418-668 197-444 (511)
214 PRK07952 DNA replication prote 98.6 3.6E-07 7.8E-12 98.8 12.7 101 420-529 67-174 (244)
215 KOG0745 Putative ATP-dependent 98.6 1.5E-07 3.3E-12 106.4 9.4 75 459-533 227-307 (564)
216 PF07726 AAA_3: ATPase family 98.6 4.1E-08 8.8E-13 95.9 3.6 112 460-594 1-129 (131)
217 PF13177 DNA_pol3_delta2: DNA 98.5 7.2E-07 1.6E-11 90.5 12.3 133 429-602 1-160 (162)
218 PRK08181 transposase; Validate 98.5 5.8E-07 1.3E-11 98.5 12.3 71 458-530 106-180 (269)
219 PRK06964 DNA polymerase III su 98.5 4.4E-07 9.5E-12 102.5 11.2 134 455-615 18-203 (342)
220 PRK06871 DNA polymerase III su 98.5 1.3E-06 2.8E-11 98.2 14.2 129 456-615 22-178 (325)
221 PRK06526 transposase; Provisio 98.5 3.5E-07 7.7E-12 99.4 9.2 72 457-530 97-172 (254)
222 COG2274 SunT ABC-type bacterio 98.5 5.8E-07 1.3E-11 110.0 12.0 141 269-480 379-521 (709)
223 PRK06835 DNA replication prote 98.5 6.7E-07 1.4E-11 100.6 11.1 69 459-529 184-258 (329)
224 PRK08769 DNA polymerase III su 98.5 3.7E-06 8.1E-11 94.3 16.9 150 455-636 23-200 (319)
225 PRK08939 primosomal protein Dn 98.5 8.8E-07 1.9E-11 98.8 11.9 102 421-529 123-229 (306)
226 PRK13406 bchD magnesium chelat 98.5 7.3E-07 1.6E-11 107.1 11.8 188 459-674 26-251 (584)
227 PF01637 Arch_ATPase: Archaeal 98.5 1.5E-06 3.2E-11 90.2 12.4 184 428-644 2-233 (234)
228 COG1484 DnaC DNA replication p 98.5 1.2E-06 2.5E-11 95.3 11.9 72 457-529 104-179 (254)
229 PF14532 Sigma54_activ_2: Sigm 98.4 3.3E-07 7E-12 90.0 6.3 81 428-532 1-84 (138)
230 PRK10365 transcriptional regul 98.4 1.8E-06 4E-11 99.7 13.1 206 426-670 140-386 (441)
231 KOG0990 Replication factor C, 98.4 2.1E-06 4.5E-11 94.6 12.2 197 412-653 28-237 (360)
232 KOG1051 Chaperone HSP104 and r 98.4 2.1E-06 4.6E-11 106.0 13.6 130 425-580 562-710 (898)
233 PRK07993 DNA polymerase III su 98.4 1.9E-06 4.2E-11 97.2 12.3 152 455-641 21-200 (334)
234 KOG2680 DNA helicase TIP49, TB 98.4 6.7E-06 1.5E-10 89.7 15.8 91 581-674 339-430 (454)
235 KOG2227 Pre-initiation complex 98.4 7.6E-06 1.6E-10 94.0 16.8 205 425-658 150-384 (529)
236 PRK09183 transposase/IS protei 98.4 1.9E-06 4.1E-11 93.9 11.0 74 456-530 100-177 (259)
237 COG3284 AcoR Transcriptional a 98.4 1E-06 2.2E-11 104.3 9.4 206 428-672 316-556 (606)
238 PF03969 AFG1_ATPase: AFG1-lik 98.3 1.7E-06 3.8E-11 98.5 9.7 141 455-631 59-208 (362)
239 TIGR02868 CydC thiol reductant 98.3 6.3E-06 1.4E-10 97.9 14.9 50 273-322 244-293 (529)
240 PF13173 AAA_14: AAA domain 98.3 5.1E-06 1.1E-10 80.6 11.5 69 459-529 3-73 (128)
241 PF01695 IstB_IS21: IstB-like 98.3 1E-06 2.2E-11 90.9 6.8 70 457-528 46-119 (178)
242 PF03215 Rad17: Rad17 cell cyc 98.3 1.1E-05 2.3E-10 96.0 16.1 208 415-654 9-269 (519)
243 PRK06921 hypothetical protein; 98.3 3.6E-06 7.9E-11 92.1 10.8 68 458-528 117-188 (266)
244 PRK06090 DNA polymerase III su 98.3 8.5E-06 1.8E-10 91.4 13.4 130 455-614 22-178 (319)
245 PRK08699 DNA polymerase III su 98.2 5.8E-06 1.3E-10 93.0 10.1 132 456-614 19-183 (325)
246 KOG0058 Peptide exporter, ABC 98.2 3.5E-06 7.7E-11 101.0 8.7 49 272-320 377-425 (716)
247 PF13401 AAA_22: AAA domain; P 98.2 1.4E-05 3E-10 76.5 10.5 73 458-530 4-100 (131)
248 KOG0480 DNA replication licens 98.1 1.2E-05 2.6E-10 94.9 11.8 223 423-674 343-644 (764)
249 COG1241 MCM2 Predicted ATPase 98.1 1.1E-05 2.4E-10 97.6 11.9 220 425-674 286-593 (682)
250 TIGR03797 NHPM_micro_ABC2 NHPM 98.1 1.5E-05 3.2E-10 97.9 13.1 30 452-481 473-502 (686)
251 PRK11176 lipid transporter ATP 98.1 9.1E-06 2E-10 97.7 10.5 30 453-482 364-393 (582)
252 TIGR03796 NHPM_micro_ABC1 NHPM 98.1 7.6E-06 1.6E-10 100.8 9.7 69 273-347 383-451 (710)
253 cd01120 RecA-like_NTPases RecA 98.1 1.2E-05 2.6E-10 78.5 9.1 72 461-532 2-100 (165)
254 TIGR01193 bacteriocin_ABC ABC- 98.1 7.6E-06 1.6E-10 100.8 9.3 48 274-321 386-433 (708)
255 TIGR03375 type_I_sec_LssB type 98.1 8.6E-06 1.9E-10 100.1 9.1 46 274-319 376-421 (694)
256 PRK11160 cysteine/glutathione 98.0 2E-05 4.4E-10 94.9 11.3 31 452-482 360-390 (574)
257 PRK13657 cyclic beta-1,2-gluca 98.0 1.4E-05 2.9E-10 96.5 9.8 43 273-315 246-288 (588)
258 PF05729 NACHT: NACHT domain 98.0 5.5E-05 1.2E-09 74.5 12.5 142 460-618 2-165 (166)
259 PF00493 MCM: MCM2/3/5 family 98.0 9.7E-07 2.1E-11 99.4 -0.1 218 425-673 24-326 (331)
260 TIGR02203 MsbA_lipidA lipid A 98.0 1.7E-05 3.7E-10 95.0 10.4 67 274-346 245-311 (571)
261 TIGR00958 3a01208 Conjugate Tr 98.0 1.3E-05 2.8E-10 98.9 9.5 48 274-321 392-439 (711)
262 KOG2035 Replication factor C, 98.0 0.00011 2.3E-09 80.0 15.1 177 421-636 9-220 (351)
263 TIGR01846 type_I_sec_HlyB type 98.0 1.4E-05 3E-10 98.4 9.3 48 274-321 369-416 (694)
264 TIGR02237 recomb_radB DNA repa 98.0 3.5E-05 7.6E-10 80.4 11.1 78 454-531 8-111 (209)
265 COG1485 Predicted ATPase [Gene 98.0 2.4E-05 5.2E-10 87.6 10.0 139 455-629 62-209 (367)
266 PF12775 AAA_7: P-loop contain 98.0 1.5E-05 3.3E-10 87.6 8.4 139 458-618 33-195 (272)
267 PF00931 NB-ARC: NB-ARC domain 98.0 0.00018 3.9E-09 78.2 16.5 159 457-646 18-203 (287)
268 KOG0478 DNA replication licens 98.0 8.2E-05 1.8E-09 88.6 14.5 167 426-612 430-622 (804)
269 PRK10789 putative multidrug tr 98.0 2.4E-05 5.1E-10 94.2 10.4 43 275-317 229-271 (569)
270 TIGR02857 CydD thiol reductant 98.0 3.4E-05 7.5E-10 91.7 11.6 30 452-481 342-371 (529)
271 TIGR01192 chvA glucan exporter 98.0 2.4E-05 5.1E-10 94.6 10.1 31 452-482 355-385 (585)
272 PLN03210 Resistant to P. syrin 98.0 0.00011 2.5E-09 95.3 16.5 159 420-619 179-367 (1153)
273 COG3267 ExeA Type II secretory 97.9 0.0003 6.6E-09 76.0 16.8 183 460-667 53-267 (269)
274 KOG0482 DNA replication licens 97.9 9.4E-06 2E-10 93.5 5.7 231 426-676 343-641 (721)
275 TIGR01842 type_I_sec_PrtD type 97.9 3.8E-05 8.3E-10 91.8 11.0 66 275-346 233-298 (544)
276 TIGR02204 MsbA_rel ABC transpo 97.9 4.1E-05 8.8E-10 91.9 10.3 31 452-482 360-390 (576)
277 KOG1970 Checkpoint RAD17-RFC c 97.9 0.00032 6.9E-09 82.2 16.6 172 459-653 111-320 (634)
278 KOG2383 Predicted ATPase [Gene 97.9 0.00014 2.9E-09 82.6 12.8 160 455-651 111-298 (467)
279 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00017 3.7E-09 77.6 12.7 129 459-612 33-176 (231)
280 COG1132 MdlB ABC-type multidru 97.8 6.2E-05 1.3E-09 90.4 10.1 136 272-480 241-377 (567)
281 PRK11174 cysteine/glutathione 97.8 5.1E-05 1.1E-09 91.5 9.3 31 452-482 370-400 (588)
282 PRK10790 putative multidrug tr 97.8 4.9E-05 1.1E-09 91.7 8.9 31 452-482 361-391 (592)
283 COG1116 TauB ABC-type nitrate/ 97.8 3.3E-05 7.1E-10 83.2 6.2 26 455-480 26-51 (248)
284 cd01124 KaiC KaiC is a circadi 97.8 0.00023 5E-09 72.4 11.9 71 461-531 2-109 (187)
285 COG4618 ArpD ABC-type protease 97.7 4E-05 8.7E-10 89.0 6.3 45 272-319 251-295 (580)
286 KOG0056 Heavy metal exporter H 97.7 2.1E-05 4.5E-10 90.5 3.9 255 146-480 281-586 (790)
287 TIGR01618 phage_P_loop phage n 97.7 0.00013 2.9E-09 77.8 9.5 24 457-480 11-34 (220)
288 PRK09361 radB DNA repair and r 97.6 0.0005 1.1E-08 72.8 11.5 39 454-492 19-60 (225)
289 PRK07276 DNA polymerase III su 97.6 0.0012 2.6E-08 73.4 14.6 154 456-646 22-198 (290)
290 PRK05917 DNA polymerase III su 97.6 0.00025 5.3E-09 78.7 9.0 121 456-603 17-154 (290)
291 cd01121 Sms Sms (bacterial rad 97.6 0.00025 5.5E-09 81.3 9.4 78 454-531 78-172 (372)
292 COG4988 CydD ABC-type transpor 97.5 0.0004 8.7E-09 82.2 11.1 31 452-482 341-371 (559)
293 KOG0477 DNA replication licens 97.5 0.00025 5.4E-09 83.7 9.1 61 427-489 451-513 (854)
294 PRK11823 DNA repair protein Ra 97.5 0.0003 6.4E-09 82.6 9.8 78 454-531 76-170 (446)
295 COG4178 ABC-type uncharacteriz 97.5 0.00016 3.5E-09 86.6 7.7 108 452-582 413-575 (604)
296 PF00910 RNA_helicase: RNA hel 97.5 0.00018 4E-09 67.9 6.5 23 461-483 1-23 (107)
297 COG4619 ABC-type uncharacteriz 97.5 0.00039 8.6E-09 71.1 9.0 27 454-480 25-51 (223)
298 COG4650 RtcR Sigma54-dependent 97.5 0.00046 9.9E-09 75.5 10.1 79 454-532 204-297 (531)
299 PRK07132 DNA polymerase III su 97.5 0.0033 7.2E-08 70.3 17.2 125 456-614 16-160 (299)
300 PRK05818 DNA polymerase III su 97.5 0.00094 2E-08 72.9 12.4 121 456-603 5-147 (261)
301 TIGR02012 tigrfam_recA protein 97.5 0.00063 1.4E-08 76.5 11.2 120 454-578 51-189 (321)
302 PRK08533 flagellar accessory p 97.5 0.00075 1.6E-08 72.5 11.3 77 454-530 20-130 (230)
303 cd01394 radB RadB. The archaea 97.5 0.00086 1.9E-08 70.6 11.2 39 454-492 15-56 (218)
304 TIGR02688 conserved hypothetic 97.4 0.0017 3.7E-08 75.2 14.1 77 431-530 193-273 (449)
305 COG1373 Predicted ATPase (AAA+ 97.4 0.017 3.6E-07 67.2 22.3 123 460-610 39-161 (398)
306 PRK06067 flagellar accessory p 97.4 0.00082 1.8E-08 71.7 10.8 40 454-493 21-63 (234)
307 COG5271 MDN1 AAA ATPase contai 97.4 0.0003 6.5E-09 89.3 8.2 138 457-617 1542-1704(4600)
308 cd03216 ABC_Carb_Monos_I This 97.4 0.00019 4.2E-09 72.6 5.5 109 453-583 21-144 (163)
309 cd03283 ABC_MutS-like MutS-lik 97.4 0.0006 1.3E-08 71.6 9.4 74 455-528 22-116 (199)
310 PTZ00265 multidrug resistance 97.4 0.0013 2.9E-08 87.3 14.6 32 452-483 1188-1219(1466)
311 COG5265 ATM1 ABC-type transpor 97.4 0.0014 2.9E-08 75.2 12.2 139 273-482 173-313 (497)
312 PRK00131 aroK shikimate kinase 97.4 0.00061 1.3E-08 68.2 8.5 40 456-497 2-41 (175)
313 TIGR02858 spore_III_AA stage I 97.4 0.00038 8.3E-09 76.6 7.6 68 459-526 112-203 (270)
314 cd00983 recA RecA is a bacter 97.3 0.00074 1.6E-08 76.1 9.3 79 454-532 51-148 (325)
315 PF13207 AAA_17: AAA domain; P 97.3 0.00019 4.1E-09 68.0 3.8 30 461-490 2-31 (121)
316 PHA00729 NTP-binding motif con 97.3 0.00035 7.5E-09 74.9 6.1 24 460-483 19-42 (226)
317 COG4987 CydC ABC-type transpor 97.3 0.0023 5E-08 75.3 13.1 29 452-480 358-386 (573)
318 cd01128 rho_factor Transcripti 97.3 0.0022 4.7E-08 69.9 12.0 28 457-484 15-42 (249)
319 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0012 2.6E-08 65.6 8.8 73 454-528 22-99 (144)
320 KOG0481 DNA replication licens 97.2 0.0019 4E-08 75.3 11.2 164 426-608 332-519 (729)
321 PRK08118 topology modulation p 97.2 0.00044 9.5E-09 70.6 5.6 32 460-491 3-34 (167)
322 PRK09376 rho transcription ter 97.2 0.0012 2.6E-08 75.9 9.3 74 461-534 172-273 (416)
323 PRK14722 flhF flagellar biosyn 97.2 0.00088 1.9E-08 76.9 8.1 111 455-588 134-266 (374)
324 PF14516 AAA_35: AAA-like doma 97.2 0.016 3.6E-07 65.5 18.2 176 457-649 30-243 (331)
325 PRK05973 replicative DNA helic 97.2 0.0054 1.2E-07 66.4 13.6 39 454-492 60-101 (237)
326 PF05707 Zot: Zonular occluden 97.2 0.00033 7.1E-09 73.0 4.2 124 461-604 3-147 (193)
327 PLN03130 ABC transporter C fam 97.2 0.0029 6.3E-08 84.9 13.9 29 454-482 639-667 (1622)
328 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0037 8.1E-08 67.1 12.3 40 454-493 17-59 (237)
329 cd01393 recA_like RecA is a b 97.2 0.0015 3.3E-08 68.8 9.0 116 454-578 15-166 (226)
330 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.002 4.4E-08 68.3 10.1 40 454-493 15-63 (235)
331 PRK07261 topology modulation p 97.2 0.00065 1.4E-08 69.6 6.0 32 461-492 3-34 (171)
332 cd03238 ABC_UvrA The excision 97.1 0.0016 3.6E-08 67.2 8.8 119 454-602 17-163 (176)
333 cd01131 PilT Pilus retraction 97.1 0.0014 3.1E-08 68.6 8.5 67 460-526 3-83 (198)
334 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0015 3.3E-08 67.5 8.5 74 455-528 22-100 (177)
335 cd03247 ABCC_cytochrome_bd The 97.1 0.0021 4.6E-08 65.7 9.5 109 453-584 23-160 (178)
336 COG1618 Predicted nucleotide k 97.1 0.0021 4.5E-08 65.5 9.0 25 458-482 5-29 (179)
337 PRK10522 multidrug transporter 97.1 0.0015 3.2E-08 78.5 9.5 29 453-481 344-372 (547)
338 TIGR00416 sms DNA repair prote 97.1 0.0016 3.5E-08 76.7 9.5 78 454-531 90-184 (454)
339 PF13671 AAA_33: AAA domain; P 97.1 0.0014 3.1E-08 63.6 7.6 37 461-499 2-38 (143)
340 KOG2170 ATPase of the AAA+ sup 97.1 0.017 3.6E-07 64.2 16.4 95 427-530 84-191 (344)
341 cd03228 ABCC_MRP_Like The MRP 97.1 0.0011 2.5E-08 67.3 7.0 109 453-584 23-158 (171)
342 KOG2228 Origin recognition com 97.1 0.003 6.5E-08 70.7 10.7 160 426-616 25-219 (408)
343 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0028 6.1E-08 67.3 10.2 22 459-480 30-51 (213)
344 KOG1051 Chaperone HSP104 and r 97.1 0.003 6.6E-08 78.8 11.8 162 424-618 185-365 (898)
345 PF06745 KaiC: KaiC; InterPro 97.1 0.003 6.5E-08 66.9 10.0 40 454-493 15-58 (226)
346 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.00091 2E-08 72.8 6.0 60 502-583 142-201 (254)
347 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0015 3.3E-08 65.2 7.2 74 455-528 22-109 (157)
348 COG1136 SalX ABC-type antimicr 97.0 0.0021 4.6E-08 69.0 8.5 72 502-601 145-216 (226)
349 PRK15455 PrkA family serine pr 97.0 0.00081 1.7E-08 80.3 5.9 63 423-491 74-137 (644)
350 cd03246 ABCC_Protease_Secretio 97.0 0.0024 5.2E-08 65.1 8.5 107 455-583 25-158 (173)
351 KOG2543 Origin recognition com 97.0 0.012 2.6E-07 67.0 14.5 62 425-495 6-67 (438)
352 cd00046 DEXDc DEAD-like helica 97.0 0.0068 1.5E-07 56.6 10.9 24 459-482 1-24 (144)
353 cd03223 ABCD_peroxisomal_ALDP 97.0 0.0023 5E-08 65.0 8.1 76 453-528 22-120 (166)
354 PF00437 T2SE: Type II/IV secr 97.0 0.0015 3.3E-08 71.1 7.2 102 417-528 96-208 (270)
355 COG1120 FepC ABC-type cobalami 97.0 0.0024 5.1E-08 69.8 8.4 26 455-480 25-50 (258)
356 TIGR00957 MRP_assoc_pro multi 97.0 0.0027 5.9E-08 84.8 10.6 29 452-480 1306-1334(1522)
357 PRK09354 recA recombinase A; P 97.0 0.0041 8.9E-08 70.8 10.5 78 454-531 56-152 (349)
358 KOG0057 Mitochondrial Fe/S clu 96.9 0.004 8.7E-08 73.5 10.6 26 455-480 375-400 (591)
359 TIGR01194 cyc_pep_trnsptr cycl 96.9 0.0041 8.8E-08 74.9 11.1 30 453-482 363-392 (555)
360 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0054 1.2E-07 62.5 10.4 75 454-528 22-124 (173)
361 PLN03232 ABC transporter C fam 96.9 0.0052 1.1E-07 82.1 12.9 30 453-482 638-667 (1495)
362 PF07693 KAP_NTPase: KAP famil 96.9 0.03 6.5E-07 62.2 16.9 28 456-483 18-45 (325)
363 cd01122 GP4d_helicase GP4d_hel 96.9 0.0043 9.2E-08 67.4 10.0 38 454-491 26-67 (271)
364 PF13191 AAA_16: AAA ATPase do 96.9 0.00066 1.4E-08 68.4 3.4 59 427-494 2-63 (185)
365 KOG1968 Replication factor C, 96.9 0.0011 2.5E-08 82.8 6.0 207 417-652 312-535 (871)
366 cd03214 ABC_Iron-Siderophores_ 96.9 0.005 1.1E-07 63.2 9.8 109 454-583 21-160 (180)
367 cd00984 DnaB_C DnaB helicase C 96.9 0.0043 9.4E-08 66.1 9.5 38 454-491 9-50 (242)
368 COG3842 PotA ABC-type spermidi 96.9 0.0016 3.6E-08 74.0 6.6 24 457-480 30-53 (352)
369 PRK06762 hypothetical protein; 96.9 0.0037 7.9E-08 62.9 8.3 41 458-498 2-42 (166)
370 PRK12723 flagellar biosynthesi 96.9 0.01 2.2E-07 68.6 12.9 110 457-588 173-306 (388)
371 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.011 2.3E-07 62.8 12.2 38 454-491 16-56 (229)
372 PF13604 AAA_30: AAA domain; P 96.9 0.0056 1.2E-07 64.1 9.9 98 459-580 19-132 (196)
373 cd03215 ABC_Carb_Monos_II This 96.8 0.0036 7.7E-08 64.3 8.3 29 454-482 22-50 (182)
374 TIGR01420 pilT_fam pilus retra 96.8 0.0016 3.5E-08 74.0 6.0 70 458-527 122-205 (343)
375 cd03232 ABC_PDR_domain2 The pl 96.8 0.0067 1.5E-07 62.9 9.9 28 454-481 29-56 (192)
376 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.014 3E-07 61.9 12.5 40 454-493 12-54 (224)
377 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.0094 2E-07 65.1 11.5 39 454-492 32-73 (259)
378 COG4525 TauB ABC-type taurine 96.8 0.0018 3.8E-08 67.9 5.3 29 452-480 25-53 (259)
379 COG1124 DppF ABC-type dipeptid 96.8 0.0055 1.2E-07 66.2 9.2 28 453-480 28-55 (252)
380 COG3854 SpoIIIAA ncharacterize 96.8 0.0077 1.7E-07 64.6 10.1 69 460-528 139-229 (308)
381 cd00464 SK Shikimate kinase (S 96.8 0.0024 5.2E-08 62.9 6.1 39 460-500 1-39 (154)
382 KOG0055 Multidrug/pheromone ex 96.8 0.0026 5.6E-08 81.2 7.6 58 502-582 1129-1186(1228)
383 PRK13947 shikimate kinase; Pro 96.8 0.0014 3E-08 66.1 4.3 31 460-490 3-33 (171)
384 PRK04841 transcriptional regul 96.7 0.033 7.1E-07 70.4 17.3 157 459-645 33-225 (903)
385 cd03229 ABC_Class3 This class 96.7 0.0032 6.9E-08 64.5 6.8 109 455-584 23-164 (178)
386 smart00534 MUTSac ATPase domai 96.7 0.0074 1.6E-07 62.4 9.5 19 461-479 2-20 (185)
387 PRK14974 cell division protein 96.7 0.016 3.5E-07 65.9 12.9 73 457-529 139-234 (336)
388 COG1126 GlnQ ABC-type polar am 96.7 0.0027 5.9E-08 67.5 6.2 27 502-528 139-165 (240)
389 PRK13538 cytochrome c biogenes 96.7 0.0046 1E-07 64.6 8.0 29 454-482 23-51 (204)
390 PRK05800 cobU adenosylcobinami 96.7 0.016 3.5E-07 59.6 11.8 33 460-492 3-35 (170)
391 PRK03839 putative kinase; Prov 96.7 0.0014 3E-08 67.0 3.9 31 460-490 2-32 (180)
392 PRK04328 hypothetical protein; 96.7 0.016 3.5E-07 62.9 12.3 39 454-492 19-60 (249)
393 PRK12724 flagellar biosynthesi 96.7 0.019 4.2E-07 66.9 13.5 37 457-493 222-262 (432)
394 PRK13541 cytochrome c biogenes 96.7 0.0094 2E-07 61.9 10.0 30 453-482 21-50 (195)
395 PRK13539 cytochrome c biogenes 96.7 0.0065 1.4E-07 63.7 8.9 29 454-482 24-52 (207)
396 cd03243 ABC_MutS_homologs The 96.7 0.0051 1.1E-07 64.3 8.0 25 456-480 27-51 (202)
397 PRK11889 flhF flagellar biosyn 96.7 0.025 5.5E-07 65.4 14.1 94 431-528 217-331 (436)
398 PRK13948 shikimate kinase; Pro 96.7 0.0039 8.3E-08 64.9 7.0 43 456-500 8-50 (182)
399 PF06309 Torsin: Torsin; Inte 96.6 0.0077 1.7E-07 59.2 8.4 52 425-482 25-77 (127)
400 COG1117 PstB ABC-type phosphat 96.6 0.0099 2.2E-07 63.2 9.8 27 454-480 29-55 (253)
401 PRK04296 thymidine kinase; Pro 96.6 0.0064 1.4E-07 63.3 8.4 70 460-529 4-90 (190)
402 COG4133 CcmA ABC-type transpor 96.6 0.0084 1.8E-07 62.6 9.0 28 455-482 25-52 (209)
403 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0046 9.9E-08 65.0 7.3 29 454-482 26-54 (218)
404 cd03269 ABC_putative_ATPase Th 96.6 0.0092 2E-07 62.4 9.5 29 454-482 22-50 (210)
405 TIGR02782 TrbB_P P-type conjug 96.6 0.0015 3.2E-08 73.0 3.7 70 458-527 132-214 (299)
406 cd00227 CPT Chloramphenicol (C 96.6 0.0021 4.6E-08 65.6 4.6 38 459-496 3-40 (175)
407 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.0096 2.1E-07 62.2 9.5 25 455-479 24-49 (200)
408 cd03213 ABCG_EPDR ABCG transpo 96.6 0.0056 1.2E-07 63.7 7.6 29 454-482 31-59 (194)
409 PRK12339 2-phosphoglycerate ki 96.6 0.046 1E-06 57.6 14.4 30 458-487 3-32 (197)
410 PTZ00202 tuzin; Provisional 96.6 0.058 1.2E-06 63.2 16.1 63 421-492 258-320 (550)
411 cd03301 ABC_MalK_N The N-termi 96.6 0.0044 9.6E-08 64.9 6.8 29 454-482 22-50 (213)
412 PRK13543 cytochrome c biogenes 96.6 0.0055 1.2E-07 64.6 7.4 29 453-481 32-60 (214)
413 cd01130 VirB11-like_ATPase Typ 96.6 0.0024 5.3E-08 66.0 4.7 72 456-527 23-110 (186)
414 COG1118 CysA ABC-type sulfate/ 96.6 0.0055 1.2E-07 68.1 7.5 26 455-480 25-50 (345)
415 PRK00625 shikimate kinase; Pro 96.6 0.0022 4.7E-08 66.2 4.2 31 460-490 2-32 (173)
416 KOG3347 Predicted nucleotide k 96.5 0.0048 1E-07 62.1 6.2 32 459-490 8-39 (176)
417 PRK13540 cytochrome c biogenes 96.5 0.0082 1.8E-07 62.5 8.3 29 454-482 23-51 (200)
418 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0068 1.5E-07 66.5 8.0 95 421-528 56-160 (264)
419 PRK13946 shikimate kinase; Pro 96.5 0.0061 1.3E-07 62.9 7.2 33 458-490 10-42 (184)
420 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0023 5E-08 65.2 4.0 35 461-497 2-36 (183)
421 COG3839 MalK ABC-type sugar tr 96.5 0.0047 1E-07 70.0 6.8 25 456-480 27-51 (338)
422 PRK00771 signal recognition pa 96.5 0.028 6.1E-07 66.0 13.4 38 456-493 93-133 (437)
423 cd03266 ABC_NatA_sodium_export 96.5 0.0048 1E-07 64.8 6.4 29 454-482 27-55 (218)
424 TIGR00767 rho transcription te 96.5 0.011 2.3E-07 68.5 9.6 27 457-483 167-193 (415)
425 cd03233 ABC_PDR_domain1 The pl 96.5 0.01 2.2E-07 62.1 8.8 29 454-482 29-57 (202)
426 TIGR03574 selen_PSTK L-seryl-t 96.5 0.02 4.2E-07 61.9 11.2 34 461-494 2-38 (249)
427 TIGR03410 urea_trans_UrtE urea 96.5 0.0066 1.4E-07 64.4 7.5 29 454-482 22-50 (230)
428 PRK10536 hypothetical protein; 96.5 0.012 2.6E-07 64.4 9.5 47 421-481 51-97 (262)
429 COG0703 AroK Shikimate kinase 96.5 0.0074 1.6E-07 62.2 7.5 31 459-489 3-33 (172)
430 PRK09452 potA putrescine/sperm 96.5 0.0032 7E-08 72.5 5.4 29 453-481 35-63 (375)
431 PRK11650 ugpC glycerol-3-phosp 96.5 0.0031 6.8E-08 72.0 5.3 28 454-481 26-53 (356)
432 cd03259 ABC_Carb_Solutes_like 96.5 0.0031 6.7E-08 66.1 4.8 28 454-481 22-49 (213)
433 KOG0055 Multidrug/pheromone ex 96.5 0.0049 1.1E-07 78.7 7.3 26 455-480 376-401 (1228)
434 PRK13949 shikimate kinase; Pro 96.5 0.0026 5.6E-08 65.1 4.0 31 460-490 3-33 (169)
435 PRK04301 radA DNA repair and r 96.5 0.015 3.2E-07 65.3 10.5 40 454-493 98-146 (317)
436 PRK14532 adenylate kinase; Pro 96.5 0.0026 5.6E-08 65.4 4.1 36 460-497 2-37 (188)
437 cd03217 ABC_FeS_Assembly ABC-t 96.5 0.0089 1.9E-07 62.4 8.1 28 454-481 22-49 (200)
438 cd02027 APSK Adenosine 5'-phos 96.5 0.01 2.2E-07 59.3 8.2 36 461-496 2-40 (149)
439 TIGR03864 PQQ_ABC_ATP ABC tran 96.5 0.011 2.3E-07 63.3 8.8 28 454-481 23-50 (236)
440 PRK06217 hypothetical protein; 96.5 0.0027 5.9E-08 65.4 4.1 31 460-490 3-33 (183)
441 PRK10416 signal recognition pa 96.4 0.041 8.9E-07 62.1 13.9 61 431-492 86-151 (318)
442 cd02020 CMPK Cytidine monophos 96.4 0.0027 5.8E-08 61.8 3.9 30 461-490 2-31 (147)
443 COG2884 FtsE Predicted ATPase 96.4 0.011 2.5E-07 61.8 8.5 62 502-585 140-201 (223)
444 cd03227 ABC_Class2 ABC-type Cl 96.4 0.013 2.8E-07 59.2 8.9 24 457-480 20-43 (162)
445 cd03293 ABC_NrtD_SsuB_transpor 96.4 0.0061 1.3E-07 64.3 6.8 29 454-482 26-54 (220)
446 cd03226 ABC_cobalt_CbiO_domain 96.4 0.0068 1.5E-07 63.3 7.0 28 454-481 22-49 (205)
447 cd03292 ABC_FtsE_transporter F 96.4 0.0038 8.3E-08 65.3 5.1 29 454-482 23-51 (214)
448 TIGR02211 LolD_lipo_ex lipopro 96.4 0.012 2.5E-07 62.1 8.7 29 453-481 26-54 (221)
449 TIGR02655 circ_KaiC circadian 96.4 0.013 2.9E-07 69.6 10.1 78 454-531 259-367 (484)
450 PF00448 SRP54: SRP54-type pro 96.4 0.021 4.5E-07 60.1 10.4 108 458-585 1-131 (196)
451 PRK09519 recA DNA recombinatio 96.4 0.016 3.5E-07 72.0 11.0 119 454-577 56-193 (790)
452 TIGR02236 recomb_radA DNA repa 96.4 0.021 4.6E-07 63.7 11.1 40 454-493 91-139 (310)
453 cd03218 ABC_YhbG The ABC trans 96.4 0.0078 1.7E-07 63.9 7.2 28 454-481 22-49 (232)
454 COG1131 CcmA ABC-type multidru 96.4 0.012 2.5E-07 65.6 8.9 28 455-482 28-55 (293)
455 cd03258 ABC_MetN_methionine_tr 96.4 0.0087 1.9E-07 63.6 7.5 30 453-482 26-55 (233)
456 cd03265 ABC_DrrA DrrA is the A 96.4 0.0053 1.1E-07 64.8 5.8 29 454-482 22-50 (220)
457 COG4608 AppF ABC-type oligopep 96.4 0.012 2.6E-07 64.5 8.5 78 453-530 34-140 (268)
458 cd03268 ABC_BcrA_bacitracin_re 96.3 0.0067 1.5E-07 63.4 6.5 28 454-481 22-49 (208)
459 TIGR00960 3a0501s02 Type II (G 96.3 0.01 2.2E-07 62.3 7.9 29 454-482 25-53 (216)
460 cd03263 ABC_subfamily_A The AB 96.3 0.0056 1.2E-07 64.5 5.8 29 454-482 24-52 (220)
461 TIGR02525 plasmid_TraJ plasmid 96.3 0.006 1.3E-07 70.2 6.5 70 459-528 150-236 (372)
462 TIGR02238 recomb_DMC1 meiotic 96.3 0.016 3.4E-07 65.3 9.6 115 454-577 92-242 (313)
463 cd01428 ADK Adenylate kinase ( 96.3 0.0033 7.1E-08 64.4 3.9 35 461-497 2-36 (194)
464 cd00544 CobU Adenosylcobinamid 96.3 0.026 5.6E-07 58.1 10.4 71 461-533 2-89 (169)
465 cd03296 ABC_CysA_sulfate_impor 96.3 0.012 2.5E-07 63.0 8.3 29 454-482 24-52 (239)
466 PRK14531 adenylate kinase; Pro 96.3 0.0038 8.3E-08 64.3 4.4 36 459-496 3-38 (183)
467 cd02021 GntK Gluconate kinase 96.3 0.0034 7.4E-08 62.0 3.8 32 461-494 2-33 (150)
468 PRK11607 potG putrescine trans 96.3 0.0082 1.8E-07 69.2 7.4 29 453-481 40-68 (377)
469 PF13479 AAA_24: AAA domain 96.3 0.027 5.9E-07 59.6 10.8 67 458-529 3-80 (213)
470 PRK13900 type IV secretion sys 96.3 0.0042 9E-08 70.4 4.9 73 456-528 158-246 (332)
471 PF04665 Pox_A32: Poxvirus A32 96.3 0.045 9.7E-07 59.5 12.5 133 456-615 11-169 (241)
472 PRK13833 conjugal transfer pro 96.3 0.0046 9.9E-08 69.8 5.2 70 458-527 144-225 (323)
473 cd03237 ABC_RNaseL_inhibitor_d 96.3 0.01 2.2E-07 64.4 7.7 27 456-482 23-49 (246)
474 PRK08154 anaerobic benzoate ca 96.3 0.013 2.8E-07 65.7 8.8 35 455-489 130-164 (309)
475 PLN03130 ABC transporter C fam 96.3 0.014 2.9E-07 78.7 10.4 29 452-480 1259-1287(1622)
476 PHA02624 large T antigen; Prov 96.3 0.0068 1.5E-07 72.9 6.7 123 454-602 427-561 (647)
477 PRK11432 fbpC ferric transport 96.3 0.0092 2E-07 68.2 7.6 29 453-481 27-55 (351)
478 PRK06696 uridine kinase; Valid 96.3 0.0084 1.8E-07 63.8 6.8 40 457-496 21-63 (223)
479 TIGR01166 cbiO cobalt transpor 96.3 0.019 4.1E-07 59.2 9.2 28 454-481 14-41 (190)
480 PRK13764 ATPase; Provisional 96.3 0.0052 1.1E-07 74.5 5.7 70 458-528 257-335 (602)
481 TIGR03265 PhnT2 putative 2-ami 96.3 0.0086 1.9E-07 68.4 7.2 28 454-481 26-53 (353)
482 TIGR02673 FtsE cell division A 96.3 0.005 1.1E-07 64.5 5.0 29 454-482 24-52 (214)
483 COG1119 ModF ABC-type molybden 96.3 0.021 4.5E-07 61.9 9.6 52 419-481 29-80 (257)
484 PRK09544 znuC high-affinity zi 96.3 0.0086 1.9E-07 65.0 6.9 30 453-482 25-54 (251)
485 PTZ00088 adenylate kinase 1; P 96.3 0.0048 1E-07 66.4 4.9 38 457-496 5-42 (229)
486 cd03295 ABC_OpuCA_Osmoprotecti 96.2 0.01 2.2E-07 63.6 7.4 29 453-481 22-50 (242)
487 PTZ00035 Rad51 protein; Provis 96.2 0.025 5.3E-07 64.4 10.7 117 454-580 114-266 (337)
488 cd03262 ABC_HisP_GlnQ_permease 96.2 0.012 2.6E-07 61.5 7.7 29 454-482 22-50 (213)
489 PLN02200 adenylate kinase fami 96.2 0.006 1.3E-07 65.8 5.6 42 454-497 39-80 (234)
490 TIGR01313 therm_gnt_kin carboh 96.2 0.0034 7.3E-08 63.0 3.4 32 461-494 1-32 (163)
491 PRK13894 conjugal transfer ATP 96.2 0.0051 1.1E-07 69.4 5.1 72 457-528 147-230 (319)
492 cd03225 ABC_cobalt_CbiO_domain 96.2 0.011 2.4E-07 61.8 7.4 27 455-481 24-50 (211)
493 PRK13695 putative NTPase; Prov 96.2 0.035 7.7E-07 56.5 10.9 23 460-482 2-24 (174)
494 PRK11248 tauB taurine transpor 96.2 0.0085 1.8E-07 65.1 6.7 29 454-482 23-51 (255)
495 TIGR02655 circ_KaiC circadian 96.2 0.035 7.7E-07 66.0 12.4 40 454-493 17-60 (484)
496 COG2874 FlaH Predicted ATPases 96.2 0.022 4.7E-07 60.6 9.4 126 445-590 13-176 (235)
497 COG1122 CbiO ABC-type cobalt t 96.2 0.0077 1.7E-07 65.1 6.2 29 454-482 26-54 (235)
498 PRK14530 adenylate kinase; Pro 96.2 0.0045 9.7E-08 65.4 4.4 30 460-489 5-34 (215)
499 PTZ00265 multidrug resistance 96.2 0.03 6.4E-07 74.8 12.8 30 452-481 405-434 (1466)
500 cd03231 ABC_CcmA_heme_exporter 96.2 0.0068 1.5E-07 63.3 5.6 29 454-482 22-50 (201)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-96 Score=816.38 Aligned_cols=438 Identities=40% Similarity=0.660 Sum_probs=410.7
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
+...+++|+||-|+|++|++|+|+|++|++|..|.++|.+.|+||||+||||||||+||||+|+|+++||++.++++|-+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEE
Q 002307 497 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 576 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIA 576 (938)
+|+|.+++++|++|..|+.++||||||||||+++.+|... ......+++||||.+||||.++.+||||+
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~-----------~~~y~kqTlNQLLvEmDGF~qNeGiIvig 444 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS-----------DQHYAKQTLNQLLVEMDGFKQNEGIIVIG 444 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc-----------HHHHHHHHHHHHHHHhcCcCcCCceEEEe
Confidence 9999999999999999999999999999999999988542 22367899999999999999999999999
Q ss_pred ecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 002307 577 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 656 (938)
Q Consensus 577 ATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~ 656 (938)
|||.|+.||+||.||||||++|.++.||...|.+||+.|+.++.+..++|+.-||+-|+||+|+||+|+||+|+..|+.+
T Consensus 445 ATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 445 ATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred ccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEEEeeccccCceeEEec
Q 002307 657 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHR 736 (938)
Q Consensus 657 ~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvtIvpRg~alG~~~~~~ 736 (938)
+...+++.|++.|-+++++|+++++..++++.++..||||.|||||+...... .|++|+||+|||.+||.+.+.|
T Consensus 525 ga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A-----~PlhKaTImPRG~sLG~t~~LP 599 (752)
T KOG0734|consen 525 GAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGA-----MPLHKATIMPRGPSLGHTSQLP 599 (752)
T ss_pred CcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCC-----ccccceeeccCCccccceeecC
Confidence 99999999999999999999999999999999999999999999999998877 8999999999999999999999
Q ss_pred CCCcccccCCHHHHHHHHHHHhhHHHHHHHHhCC--CCCccCCChHHHHHHHHHHHHHHhcCCccccccCCCCCcccccc
Q 002307 737 LDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ--DTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKVK 814 (938)
Q Consensus 737 ~~~~~~~~ttr~~l~~~I~vlLaGRAAEel~fG~--~STGAs~DDL~~AT~lAr~MV~~~GMs~~l~~~gG~~~~~~~~~ 814 (938)
. .|.+..+ |.+|++++.||||||+|||++||. +||||++| |++||++|+.||+.||||+++ ||+.+.....
T Consensus 600 e-~D~~~~T-k~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssD-l~qAT~lA~~MVt~fGMSd~v----G~v~~~~~~~ 672 (752)
T KOG0734|consen 600 E-KDRYSIT-KAQLLARLDVCMGGRVAEELIFGTDKITSGASSD-LDQATKLARRMVTKFGMSDKV----GPVTLSAEDN 672 (752)
T ss_pred c-cchhhHH-HHHHHHHHHHhhcchHHHHHhccCCcccccccch-HHHHHHHHHHHHHHcCccccc----cceeeeccCC
Confidence 7 7778777 999999999999999999999995 69999988 999999999999999999999 9987764321
Q ss_pred ccCCCcccCCCccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHh
Q 002307 815 FVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILN 894 (938)
Q Consensus 815 f~G~~~~~~g~~~~d~~~~~~~~~~~~se~~a~~I~~lL~~ay~rA~~LL~~~r~~L~~LA~~LLekEtL~geEi~~IL~ 894 (938)
+ .....+..+.++.+|.+||+++|+||+.||+.|...+++||++||++|||+++||+++++
T Consensus 673 --~-----------------~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~ 733 (752)
T KOG0734|consen 673 --S-----------------SSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLK 733 (752)
T ss_pred --C-----------------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh
Confidence 0 012233345678899999999999999999999999999999999999999999999997
Q ss_pred cC
Q 002307 895 NY 896 (938)
Q Consensus 895 ~~ 896 (938)
..
T Consensus 734 g~ 735 (752)
T KOG0734|consen 734 GK 735 (752)
T ss_pred cc
Confidence 54
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-94 Score=846.43 Aligned_cols=732 Identities=36% Similarity=0.509 Sum_probs=552.9
Q ss_pred cccccccccchhhcccCCCCCCCC-CCchhHHHHHhhcCCCCcCcccccccchhhhHhhhhccccCcc--chhHHHHHhh
Q 002307 39 SRTNFLHRSFTVLCELSQPGDTSK-PTEEDFVTRVLKENPSQVEPKYLIGERFYSLKERQNLSEKNDV--GIFQSLAEKL 115 (938)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 115 (938)
+.....+|..+.+|..+.....++ .++.++..+.++.+|++ +.+..|...+..++.|. +.++. ..
T Consensus 23 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~~~k~~~~~~~~~~~s~~~~~~---~~ 90 (774)
T KOG0731|consen 23 ESSRSLRRFSETRSVLLIVRKENGSVAKVGAALGFLKKEPEK---------KLKLRKGASELSEKKNESVGIMED---VK 90 (774)
T ss_pred ccccccccccceeeeecccccccccccchhhhhhhhcccchh---------hccccccchhhcccccccchhhhh---hh
Confidence 456667788888776443334444 88899999999999998 67777777666665544 33333 11
Q ss_pred hcccccccccccCCCCCcccHHHHHHhhcCcccccccccccccchHHHHhhhhcccCcccHHHHHHhhhccceeEEeecC
Q 002307 116 NSKENSKKESDNQNVSGSVYLKDILREYKGKLYVPEQVFGHELSEEEEFHKNVKELPKMSIEEFKKYMESDKVKLLTSKG 195 (938)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (938)
..+.+ -..++.-.....++.++|.+++.........++ .+.+.++.+. +.+.|+++
T Consensus 91 ~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----~~~~t~~~ 146 (774)
T KOG0731|consen 91 ESKRE----------KEQKSFESELLSSKTKLSRSEEGQELVRAQREE---------NRPLPDMRKR-----FVQSTPKG 146 (774)
T ss_pred ccchh----------hhhcccccccccccccccchhhhhhhhhccccc---------CCCccccccc-----ceecchhH
Confidence 11111 112233344567899999999988776665554 2223332222 67778887
Q ss_pred cccccccccccceeEEeccCCCcccccccccceecChhHHHHHHhhccCCeeeeeccccccccCCCCCCcccchhhhhHH
Q 002307 196 INGVAFANGYRDFIVDLKDIPGNKKLQRTKWAMRLDDNEAQALLDEYTGPQYEIEKHMTSWVGKLPEYPHPVASSISSRL 275 (938)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (938)
... |...|..+.|+.+ .-+-..+.-|.+-|.+.+.+.+.-.. ++...+++..++...-.
T Consensus 147 ~~~--f~~~~~~~~~~~~---~~ei~~~df~~~~le~g~v~~~evv~---~~~~~rv~~~~~~~~~~------------- 205 (774)
T KOG0731|consen 147 LAV--FMEALDLDRVESG---WQEITWRDFKQKLLEKGEVGKLEVVN---PYAVVRVELDRGRIPGD------------- 205 (774)
T ss_pred HHH--HHHHhcccccccc---ceeeeHHHHHHHHhhccceeeEEeec---cceeEEEEEeccccccc-------------
Confidence 766 6667777766654 11112223344555555443332221 34444444444433322
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccccccchhhhhhhhhhHhhhHHHHHHhhcCCCccccc
Q 002307 276 MVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSGEGGILSKF 355 (938)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (938)
...+.+|-. ++.++.+.+.+..+....++....
T Consensus 206 -----------------------------------~~~~~~~~~------------i~~v~~F~~kl~~a~~~l~~~~~~ 238 (774)
T KOG0731|consen 206 -----------------------------------RLIQKVWFN------------IRSVDNFERKLDEAQRNLGIDTVV 238 (774)
T ss_pred -----------------------------------cceeeEEEE------------ecccchHHHHHHHHHHHhCCCcee
Confidence 111222222 222444445555555554554433
Q ss_pred cccccc---cchhhHHhhHHHHHHHHHHHHHHHHHHhhcCCC---Cccccccccccccccccc--cccccCCCCcccCcc
Q 002307 356 YEFYTF---GGLSASLEMLKPITLVILTMVLLIRFTLSRRPK---NFRKWDLWQGIDFSRSKA--EARVDGSTGVKFSDV 427 (938)
Q Consensus 356 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~l~~~~~~r~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~F~dV 427 (938)
..++.. ..+...+..+.|.+.++..+..+ .|+.. ............|+.+++ +...+..++++|+||
T Consensus 239 ~~pV~~~~~~~~~~~~~~~~pti~~~~~l~~l-----~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDV 313 (774)
T KOG0731|consen 239 RVPVTYISESLLDLILGLLLPTILLLGGLLYL-----SRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDV 313 (774)
T ss_pred EeeeEEeecchhhhhhhhhhHHHHHHHhHhee-----eeecccccccCCccccCcceeeeccceeeeccCCCCCCccccc
Confidence 333322 22333444455522222222221 22211 111111122234554444 444567788999999
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHH
Q 002307 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIR 507 (938)
Q Consensus 428 vG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr 507 (938)
+|++++|++|.|+|.+|+||+.|+++|+++|+|+||+||||||||+||||+|+|+++||+.+++++|+++++|.++.++|
T Consensus 314 AG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr 393 (774)
T KOG0731|consen 314 AGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVR 393 (774)
T ss_pred cCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCcc
Q 002307 508 DLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (938)
Q Consensus 508 ~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpA 587 (938)
++|..|+.++||||||||||+++..|++... ...+++.++++||||.+|||+....+|+|+|+||+++.||+|
T Consensus 394 ~lf~~ar~~aP~iifideida~~~~r~G~~~-------~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~a 466 (774)
T KOG0731|consen 394 DLFPLARKNAPSIIFIDEIDAVGRKRGGKGT-------GGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPA 466 (774)
T ss_pred HHHHHhhccCCeEEEeccccccccccccccc-------CCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHH
Confidence 9999999999999999999999999852111 126788999999999999999999999999999999999999
Q ss_pred ccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhH
Q 002307 588 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDM 666 (938)
Q Consensus 588 LlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl 666 (938)
|+||||||++|++++|+..+|.+|++.|++++++. +++++.++|.+|+||+|+||.|+||+|+..|.|++...|+..|+
T Consensus 467 llrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~ 546 (774)
T KOG0731|consen 467 LLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDL 546 (774)
T ss_pred hcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhH
Confidence 99999999999999999999999999999999985 78889999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEEEeeccccCceeEEecCCCcccccCC
Q 002307 667 DDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFER 746 (938)
Q Consensus 667 ~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvtIvpRg~alG~~~~~~~~~~~~~~tt 746 (938)
..|+++++.|.++++..++.++++.+|+||+|||+++|++++. +++.++||+| |+++||+++.|. +.++++
T Consensus 547 ~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~-----dpl~kvsIiP-GqalG~a~~~P~--~~~l~s- 617 (774)
T KOG0731|consen 547 EYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHA-----DPLLKVSIIP-GQALGYAQYLPT--DDYLLS- 617 (774)
T ss_pred HHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhcccccc-----CcceeEEecc-CCccceEEECCc--cccccc-
Confidence 9999999999999899999999999999999999999999887 9999999999 779999999997 336666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhC-CCCCccCCChHHHHHHHHHHHHHHhcCCccccccCCCCCccccccccCCCcccCCC
Q 002307 747 RPQLLHRLQVLLGGRAAEEVIYG-QDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGS 825 (938)
Q Consensus 747 r~~l~~~I~vlLaGRAAEel~fG-~~STGAs~DDL~~AT~lAr~MV~~~GMs~~l~~~gG~~~~~~~~~f~G~~~~~~g~ 825 (938)
+++|+++||++||||||||++|| ++||||++| |++||++|++||+.|||++++ |++++.... .|+..
T Consensus 618 k~ql~~rm~m~LGGRaAEev~fg~~iTtga~dd-l~kvT~~A~~~V~~~Gms~ki----g~~~~~~~~--~~~~~----- 685 (774)
T KOG0731|consen 618 KEQLFDRMVMALGGRAAEEVVFGSEITTGAQDD-LEKVTKIARAMVASFGMSEKI----GPISFQMLL--PGDES----- 685 (774)
T ss_pred HHHHHHHHHHHhCcchhhheecCCccCchhhcc-HHHHHHHHHHHHHHcCccccc----CceeccCcc--ccccc-----
Confidence 99999999999999999999997 799999877 999999999999999999999 898873321 11111
Q ss_pred ccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCCCCccc
Q 002307 826 LYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYPPQTPISRL 905 (938)
Q Consensus 826 ~~~d~~~~~~~~~~~~se~~a~~I~~lL~~ay~rA~~LL~~~r~~L~~LA~~LLekEtL~geEi~~IL~~~~~~~~~~~~ 905 (938)
. ..|......+.++.++++|++.||++|.++|++|++.++.||+.||++|+|+++|+.++++.+|+..+....
T Consensus 686 ------~-~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~~~ 758 (774)
T KOG0731|consen 686 ------F-RKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEKNV 758 (774)
T ss_pred ------c-cCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcccccch
Confidence 0 112333444556667799999999999999999999999999999999999999999999999998874444
Q ss_pred cccCCCCCC
Q 002307 906 LEEENPGTL 914 (938)
Q Consensus 906 ~~~~~~~~~ 914 (938)
..+...+..
T Consensus 759 ~~~~~~~~~ 767 (774)
T KOG0731|consen 759 IVEQKIGLE 767 (774)
T ss_pred hhhhccccc
Confidence 443333333
No 3
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-92 Score=815.21 Aligned_cols=460 Identities=44% Similarity=0.744 Sum_probs=438.3
Q ss_pred ccccccccccccccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 404 GIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
.+++++++++...+....++|.||+|++++|++|.|+|++|++|..|..+|.+.|+|+||+||||||||+||||+|++++
T Consensus 129 ~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 129 AFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred ccCCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC
Confidence 78899999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh
Q 002307 484 VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (938)
Q Consensus 484 ~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL 563 (938)
+||+++++|+|+++|+|.+++++|++|.+|++++||||||||||+++..|+.+.++ +++++++++||+|.+|
T Consensus 209 VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg--------gnderEQTLNQlLvEm 280 (596)
T COG0465 209 VPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG--------GNDEREQTLNQLLVEM 280 (596)
T ss_pred CCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC--------CchHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999776555 7889999999999999
Q ss_pred cCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHH
Q 002307 564 DGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLA 643 (938)
Q Consensus 564 Dg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~ 643 (938)
||+..+.+|+||++||+|+.+|+||+||||||++|.++.||..+|.+|++.|+++.++..++|+..+|+.|+||+|+||+
T Consensus 281 DGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~ 360 (596)
T COG0465 281 DGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLA 360 (596)
T ss_pred ccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEEEe
Q 002307 644 QLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIV 723 (938)
Q Consensus 644 ~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvtIv 723 (938)
|++|+|++.|.++++..|++.||++|+++++.|++++++.+++.+++.+||||+|||+++++++.. ++++|+||+
T Consensus 361 nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~-----d~v~KvtIi 435 (596)
T COG0465 361 NLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDA-----DPVHKVTII 435 (596)
T ss_pred hhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCC-----cccceeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999988 999999999
Q ss_pred eccccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhC-CCCCccCCChHHHHHHHHHHHHHHhcCCccccc
Q 002307 724 PRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG-QDTSRASVNYLADASWLARKILTIWNLENPMVI 802 (938)
Q Consensus 724 pRg~alG~~~~~~~~~~~~~~ttr~~l~~~I~vlLaGRAAEel~fG-~~STGAs~DDL~~AT~lAr~MV~~~GMs~~l~~ 802 (938)
|||+++||+++.|. ++.++.+ +++++++|+++||||||||++|| ++||||++| +++||++||.||++|||++++
T Consensus 436 PrG~alG~t~~~Pe-~d~~l~s-k~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D-~~~at~~ar~mVt~~Gms~~l-- 510 (596)
T COG0465 436 PRGRALGYTLFLPE-EDKYLMS-KEELLDRIDVLLGGRAAEELIFGYEITTGASND-LEKATDLARAMVTEYGMSAKL-- 510 (596)
T ss_pred cCchhhcchhcCCc-ccccccc-HHHHHHHHHHHhCCcHhhhhhhcccccccchhh-HHHHHHHHHHhhhhcCcchhh--
Confidence 99999999999997 5678877 99999999999999999999999 999999998 999999999999999999999
Q ss_pred cCCCCCccccc-cccCCCcccCCCccCCCCCCCCCCCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002307 803 HGEPPPWRKKV-KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWR----TEELLRDMYGRTVTLLRRHHAALLKTVKV 877 (938)
Q Consensus 803 ~gG~~~~~~~~-~f~G~~~~~~g~~~~d~~~~~~~~~~~~se~~a~~----I~~lL~~ay~rA~~LL~~~r~~L~~LA~~ 877 (938)
||+.|.... .|+|++. ..+++|+.+++. |++++.+||++|+++|.+|++.++.++++
T Consensus 511 --G~v~~~~~~~~flg~~~----------------~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~ 572 (596)
T COG0465 511 --GPVAYEQVEGVFLGRYQ----------------KAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEM 572 (596)
T ss_pred --Cceehhhcccccccccc----------------cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999998765 5766532 345677777765 48999999999999999999999999999
Q ss_pred HHHhcccCHHHHHHHHhcCCCC
Q 002307 878 LLNQKEIGREEIDFILNNYPPQ 899 (938)
Q Consensus 878 LLekEtL~geEi~~IL~~~~~~ 899 (938)
|+++|||++++|..|++.+..+
T Consensus 573 Lle~Eti~~~~i~~i~~~~~~~ 594 (596)
T COG0465 573 LLEKETIDAEEIKDILAGRKLP 594 (596)
T ss_pred HHHhhccCHHHHHHHHhcccCC
Confidence 9999999999999999876543
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.3e-79 Score=729.30 Aligned_cols=457 Identities=42% Similarity=0.701 Sum_probs=415.0
Q ss_pred ccccccccccccccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 404 GIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
.+++++++++........++|+||+|++++++++.+++.++++++.|..+|.+.|+|+||+||||||||++|+++|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 162 LMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred ccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788888777777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh
Q 002307 484 VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (938)
Q Consensus 484 ~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL 563 (938)
.||+.+++++|.+.+.|.+..+++.+|..|+...||||||||||.++.+|+.+..+ .+.+.++++++||.++
T Consensus 242 ~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~--------~~~e~~~~L~~LL~~~ 313 (638)
T CHL00176 242 VPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG--------GNDEREQTLNQLLTEM 313 (638)
T ss_pred CCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC--------CcHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999877543222 4566788999999999
Q ss_pred cCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHH
Q 002307 564 DGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLA 643 (938)
Q Consensus 564 Dg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~ 643 (938)
|++..+.+++||++||+++.+|++++||||||++|.+++|+.++|.+||+.++++..+..++++..+|+.|+|||++||+
T Consensus 314 dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~ 393 (638)
T CHL00176 314 DGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLA 393 (638)
T ss_pred ccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHH
Confidence 99988899999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEEEe
Q 002307 644 QLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIV 723 (938)
Q Consensus 644 ~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvtIv 723 (938)
++|++|+..|.+++...|+.+|+++|++++..|.+++. ..++.+++++||||+||||++++++.. +++++|||+
T Consensus 394 ~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~-----~~v~kvtI~ 467 (638)
T CHL00176 394 NLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNH-----DPVQKVTLI 467 (638)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCC-----CceEEEEEe
Confidence 99999999999999999999999999999999987754 456778999999999999999999887 899999999
Q ss_pred eccccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhC--CCCCccCCChHHHHHHHHHHHHHHhcCCcccc
Q 002307 724 PRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLARKILTIWNLENPMV 801 (938)
Q Consensus 724 pRg~alG~~~~~~~~~~~~~~ttr~~l~~~I~vlLaGRAAEel~fG--~~STGAs~DDL~~AT~lAr~MV~~~GMs~~l~ 801 (938)
|||+++||+++.|. ++.++.+ |.+|+++|+++|||||||+++|| ++||||++| |++||+||+.||++||||+ +
T Consensus 468 prg~~~G~~~~~p~-~~~~~~t-~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~D-l~~AT~iA~~mv~~~Gm~~-~- 542 (638)
T CHL00176 468 PRGQAKGLTWFTPE-EDQSLVS-RSQILARIVGALGGRAAEEVVFGSTEVTTGASND-LQQVTNLARQMVTRFGMSS-I- 542 (638)
T ss_pred ecCCCCCceEecCC-ccccccc-HHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhH-HHHHHHHHHHHHHHhCCCc-C-
Confidence 99999999999886 5566666 99999999999999999999998 579999887 9999999999999999995 7
Q ss_pred ccCCCCCccccc---cccCCCcccCCCccCCCCCCCCCCCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002307 802 IHGEPPPWRKKV---KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDI----AWRTEELLRDMYGRTVTLLRRHHAALLKT 874 (938)
Q Consensus 802 ~~gG~~~~~~~~---~f~G~~~~~~g~~~~d~~~~~~~~~~~~se~~----a~~I~~lL~~ay~rA~~LL~~~r~~L~~L 874 (938)
||+++.... .|+|+.+ .....+|+++ +.+|+++|++||++|+++|++|+++|++|
T Consensus 543 ---g~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~l 604 (638)
T CHL00176 543 ---GPISLESNNSTDPFLGRFM---------------QRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLL 604 (638)
T ss_pred ---CceeecCCCCccccccccc---------------ccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999886432 4555432 0223456555 45679999999999999999999999999
Q ss_pred HHHHHHhcccCHHHHHHHHhcCC
Q 002307 875 VKVLLNQKEIGREEIDFILNNYP 897 (938)
Q Consensus 875 A~~LLekEtL~geEi~~IL~~~~ 897 (938)
|++|+++|+|+++||++|++.++
T Consensus 605 a~~Lle~Etl~~~ei~~il~~~~ 627 (638)
T CHL00176 605 VELLLQKETIDGDEFREIVNSYT 627 (638)
T ss_pred HHHHHHhCccCHHHHHHHHhhcC
Confidence 99999999999999999998764
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2e-77 Score=715.76 Aligned_cols=460 Identities=39% Similarity=0.677 Sum_probs=418.5
Q ss_pred cccccccccccccccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 403 QGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.|...+.....+.....+|+|+.|.+.+++++.+++.+++++..|..++...|+|+||+||||||||++++++|+++
T Consensus 130 ~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 130 GAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred eeEEeccccccccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 34567777666666666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH
Q 002307 483 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (938)
Q Consensus 483 g~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e 562 (938)
+.||+.++++++.+.+.|.+...++.+|..|+..+||||||||||+++.+++...++ .+.+..++++++|.+
T Consensus 210 ~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g--------~~~~~~~~ln~lL~~ 281 (644)
T PRK10733 210 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG--------GHDEREQTLNQMLVE 281 (644)
T ss_pred CCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC--------CchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887654332 445677899999999
Q ss_pred hcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHH
Q 002307 563 LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARL 642 (938)
Q Consensus 563 LDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL 642 (938)
||++..+.+++||+|||+++.+|++++||||||+.|.|++|+.++|.+||+.|+++.++..++++..+|+.|.||||+||
T Consensus 282 mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl 361 (644)
T PRK10733 282 MDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADL 361 (644)
T ss_pred hhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHH
Confidence 99999889999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEEE
Q 002307 643 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISI 722 (938)
Q Consensus 643 ~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvtI 722 (938)
.++|++|+..|+++++..|+..|++.|++++..|.+++...+++.+++++|+||+|||+++++++.. +++++|||
T Consensus 362 ~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~-----~~~~~v~i 436 (644)
T PRK10733 362 ANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEH-----DPVHKVTI 436 (644)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCC-----CceeEEEE
Confidence 9999999999999999999999999999999999888777788889999999999999999999877 88999999
Q ss_pred eeccccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhC--CCCCccCCChHHHHHHHHHHHHHHhcCCccc
Q 002307 723 VPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLARKILTIWNLENPM 800 (938)
Q Consensus 723 vpRg~alG~~~~~~~~~~~~~~ttr~~l~~~I~vlLaGRAAEel~fG--~~STGAs~DDL~~AT~lAr~MV~~~GMs~~l 800 (938)
+|||.++||+++.|. ++.+..+ |.+|+++|+++|||||||+++|| ++||||++| |++||+||+.||++||||+++
T Consensus 437 ~prg~~~g~~~~~~~-~~~~~~~-~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~D-l~~AT~lA~~mv~~~Gms~~l 513 (644)
T PRK10733 437 IPRGRALGVTFFLPE-GDAISAS-RQKLESQISTLYGGRLAEEIIYGPEHVSTGASND-IKVATNLARNMVTQWGFSEKL 513 (644)
T ss_pred eccCCCcceeEECCC-ccccccc-HHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHH-HHHHHHHHHHHHHHhCCCccc
Confidence 999999999999886 4555544 99999999999999999999998 579999877 999999999999999999999
Q ss_pred cccCCCCCccccc--cccCCCcccCCCccCCCCCCCCCCCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002307 801 VIHGEPPPWRKKV--KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDI----AWRTEELLRDMYGRTVTLLRRHHAALLKT 874 (938)
Q Consensus 801 ~~~gG~~~~~~~~--~f~G~~~~~~g~~~~d~~~~~~~~~~~~se~~----a~~I~~lL~~ay~rA~~LL~~~r~~L~~L 874 (938)
||+.|.... .|+|++. .....+|+++ +++|+++|++||++|+++|++|++.|++|
T Consensus 514 ----g~~~~~~~~~~~~lg~~~---------------~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~l 574 (644)
T PRK10733 514 ----GPLLYAEEEGEVFLGRSV---------------AKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAM 574 (644)
T ss_pred ----cchhhccccccccccccc---------------ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999886544 5666533 1235577666 46679999999999999999999999999
Q ss_pred HHHHHHhcccCHHHHHHHHhcCC
Q 002307 875 VKVLLNQKEIGREEIDFILNNYP 897 (938)
Q Consensus 875 A~~LLekEtL~geEi~~IL~~~~ 897 (938)
|++|+|+|||+++||++|+..+.
T Consensus 575 a~~Lle~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 575 KDALMKYETIDAPQIDDLMARRD 597 (644)
T ss_pred HHHHHHhceeCHHHHHHHHhcCC
Confidence 99999999999999999998763
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.7e-76 Score=690.10 Aligned_cols=458 Identities=45% Similarity=0.755 Sum_probs=416.4
Q ss_pred ccccccccccccccccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 402 WQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
++...+++++++...++.+.++|+||+|++++|+++.+++.++++++.|..+|.++|+|+||+||||||||++|+++|++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 32 GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45677889999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHH
Q 002307 482 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 561 (938)
Q Consensus 482 lg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~ 561 (938)
++.||+.++++++.+.+.|.+...++.+|..|+..+||||||||||.++.+++....+ .+.+..+++++||.
T Consensus 112 ~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~--------~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 112 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG--------GNDEREQTLNQLLV 183 (495)
T ss_pred cCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC--------ccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887643222 34566788999999
Q ss_pred HhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHH
Q 002307 562 ELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGAR 641 (938)
Q Consensus 562 eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaD 641 (938)
+||++..+.+++||+|||+++.+|++++||||||+.|++++|+.++|.+||+.++++.++..++++..+|..+.|||++|
T Consensus 184 ~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgad 263 (495)
T TIGR01241 184 EMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGAD 263 (495)
T ss_pred hhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHH
Confidence 99999888899999999999999999999999999999999999999999999999888878889999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEE
Q 002307 642 LAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 721 (938)
Q Consensus 642 L~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvt 721 (938)
|+++|++|+..|.++++..|+.+|+..|++++..+...+...+++.+++++|+||+|||+++++++.. .+++++|
T Consensus 264 l~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~-----~~v~~vs 338 (495)
T TIGR01241 264 LANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDA-----DPVHKVT 338 (495)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCC-----CceEEEE
Confidence 99999999999999998999999999999999999887777788899999999999999999999876 7899999
Q ss_pred EeeccccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhCCCCCccCCChHHHHHHHHHHHHHHhcCCcccc
Q 002307 722 IVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMV 801 (938)
Q Consensus 722 IvpRg~alG~~~~~~~~~~~~~~ttr~~l~~~I~vlLaGRAAEel~fG~~STGAs~DDL~~AT~lAr~MV~~~GMs~~l~ 801 (938)
|.|||.++||+.+.+. ++.+..+ +.+++++|+|+|||||||+++||++|+|+++| |++||++|+.||..|||++++
T Consensus 339 i~prg~~~G~~~~~~~-~~~~~~t-~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~D-l~~At~lA~~mv~~~Gm~~~~- 414 (495)
T TIGR01241 339 IIPRGQALGYTQFLPE-EDKYLYT-KSQLLAQIAVLLGGRAAEEIIFGEVTTGASND-IKQATNIARAMVTEWGMSDKL- 414 (495)
T ss_pred EeecCCccceEEecCc-cccccCC-HHHHHHHHHHHhhHHHHHHHHhcCCCCCchHH-HHHHHHHHHHHHHHhCCCccc-
Confidence 9999999999998775 3445554 99999999999999999999999999999877 999999999999999999988
Q ss_pred ccCCCCCccccc--cccCCCcccCCCccCCCCCCCCCCCCCCcH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002307 802 IHGEPPPWRKKV--KFVGPRLDFEGSLYDDYGLTEPPVNFNLDD----DIAWRTEELLRDMYGRTVTLLRRHHAALLKTV 875 (938)
Q Consensus 802 ~~gG~~~~~~~~--~f~G~~~~~~g~~~~d~~~~~~~~~~~~se----~~a~~I~~lL~~ay~rA~~LL~~~r~~L~~LA 875 (938)
|++++.... .++|+++. ....+++ .++++++++|++||++|+++|++|+++|++||
T Consensus 415 ---g~~~~~~~~~~~~l~~~~~---------------~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la 476 (495)
T TIGR01241 415 ---GPVAYGSDGGDVFLGRGFA---------------KAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLA 476 (495)
T ss_pred ---CceeeccCccccccccccc---------------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 888886543 45554321 2234554 44567899999999999999999999999999
Q ss_pred HHHHHhcccCHHHHHHHHh
Q 002307 876 KVLLNQKEIGREEIDFILN 894 (938)
Q Consensus 876 ~~LLekEtL~geEi~~IL~ 894 (938)
++|+++|+|+++||++|++
T Consensus 477 ~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 477 KALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHcCeeCHHHHHHHhC
Confidence 9999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-55 Score=478.56 Aligned_cols=256 Identities=45% Similarity=0.779 Sum_probs=246.9
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
.+++.|+++|+||+|+++++++|+|.|+. |++|++|.++|+.||+|||||||||||||+||||+|++.++.|+.+.+|+
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 46788999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
|+.+|+|+++.-+|++|+.|+.++||||||||||+++.+|.....+ ++.+.++++.+||.+||||++..+|-
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~--------gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTS--------GDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCC--------chHHHHHHHHHHHHhccCCCCCCCeE
Confidence 9999999999999999999999999999999999999998654433 77889999999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
||+|||+++.|||||+|||||||.|+||+||.++|.+||+.|.+++.+..++|++.+|+.++|+|||||.++|.+|.+.|
T Consensus 293 VI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 293 VIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred EEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccchhhHHHHHHhhccCCC
Q 002307 654 VRKGHESILSSDMDDAVDRLTVGPK 678 (938)
Q Consensus 654 ~r~~~~~It~edl~~Ai~rv~~g~~ 678 (938)
.|+.+..|+++||..|++++.....
T Consensus 373 iR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 373 IRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHhccCeecHHHHHHHHHHHHhccc
Confidence 9999999999999999999987543
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=8.9e-52 Score=512.45 Aligned_cols=308 Identities=19% Similarity=0.253 Sum_probs=263.2
Q ss_pred hhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHH-------------------------------
Q 002307 450 FDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL------------------------------- 498 (938)
Q Consensus 450 ~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~------------------------------- 498 (938)
+.++|+++|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 3577999999999999999999999999999999999999999998643
Q ss_pred ----------h--hhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC
Q 002307 499 ----------V--GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 566 (938)
Q Consensus 499 ----------v--G~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~ 566 (938)
+ +.+..+++.+|+.|++++||||||||||+++.+. ....++++|+.+||+.
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-----------------s~~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-----------------SNYLSLGLLVNSLSRD 1764 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-----------------cceehHHHHHHHhccc
Confidence 1 2233458999999999999999999999998642 1224588999999986
Q ss_pred c---CCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHh--cccccCC-ccCHHHHHhhCCCCCHH
Q 002307 567 D---TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA--SKVKMSD-SVDLSSYAKNLPGWTGA 640 (938)
Q Consensus 567 ~---~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l--~~~~l~~-dvdL~~LA~~t~GfSga 640 (938)
. ...+|+||||||+|+.|||||+||||||+.|+|+.|+..+|++++..++ ++..+.. .+|+..+|+.|+|||||
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 3 4568999999999999999999999999999999999999999988643 4445543 36899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceE
Q 002307 641 RLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRI 720 (938)
Q Consensus 641 DL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kv 720 (938)
||+++|++|+..|+++++..|+.++++.|++|+++|.+.+.. ... .+.+++||+||||+++++... +++++|
T Consensus 1845 DLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~-~~~ia~yEiGhAvvq~~L~~~-----~pv~kI 1916 (2281)
T CHL00206 1845 DLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQ-DHGILFYQIGRAVAQNVLLSN-----CPIDPI 1916 (2281)
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccc-hhhhhhhHHhHHHHHHhccCC-----CCcceE
Confidence 999999999999999999999999999999999999875432 222 335799999999999999877 899999
Q ss_pred EEeec------cccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhCCCCCccCCChHHHHHHHHHHHHHHh
Q 002307 721 SIVPR------GQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIW 794 (938)
Q Consensus 721 tIvpR------g~alG~~~~~~~~~~~~~~ttr~~l~~~I~vlLaGRAAEel~fG~~STGAs~DDL~~AT~lAr~MV~~~ 794 (938)
||.++ |.++||+++.|. + ..++ +.+++.+|++||||||||+++|+..+ .|+.||+.|
T Consensus 1917 SIy~~~~~~r~~~~yl~~wyle~--~-~~mk-k~tiL~~Il~cLAGraAedlwf~~~~-------------~~~n~It~y 1979 (2281)
T CHL00206 1917 SIYMKKKSCKEGDSYLYKWYFEL--G-TSMK-KLTILLYLLSCSAGSVAQDLWSLPGP-------------DEKNGITSY 1979 (2281)
T ss_pred EEecCCccccCcccceeEeecCC--c-ccCC-HHHHHHHHHHHhhhhhhhhhccCcch-------------hhhcCcccc
Confidence 99532 567899999875 2 4555 99999999999999999999996543 467889999
Q ss_pred cCCcc
Q 002307 795 NLENP 799 (938)
Q Consensus 795 GMs~~ 799 (938)
||.+.
T Consensus 1980 g~vEn 1984 (2281)
T CHL00206 1980 GLVEN 1984 (2281)
T ss_pred cchhh
Confidence 99887
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-48 Score=445.74 Aligned_cols=252 Identities=44% Similarity=0.728 Sum_probs=238.1
Q ss_pred ccccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc
Q 002307 414 ARVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (938)
Q Consensus 414 ~~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 492 (938)
....+.++++|+||+|++++|.+|++.|.| +++|+.|.++|+.+|+|||||||||||||++|||+|++++++|+++.+.
T Consensus 423 e~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgp 502 (693)
T KOG0730|consen 423 EILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGP 502 (693)
T ss_pred heeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCH
Confidence 345678999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeE
Q 002307 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~V 572 (938)
++.++|+|++++.++++|.+|+..+|||||+||||+++..|++..+ ....+.+++||++|||+...++|
T Consensus 503 EL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-----------~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 ELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-----------GVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-----------chHHHHHHHHHHHcccccccCcE
Confidence 9999999999999999999999999999999999999999975322 33568899999999999999999
Q ss_pred EEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 002307 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 652 (938)
Q Consensus 573 iVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~ 652 (938)
+||||||+|+.||+||+||||||+.|+|++||.+.|.+||+.+++++++.+++|+.+||..|.|||||||.++|++|+..
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC--cccchhhHHHHHHhhccC
Q 002307 653 AVRKGH--ESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 653 A~r~~~--~~It~edl~~Ai~rv~~g 676 (938)
|.++.- ..|..+||.+|+..+...
T Consensus 652 a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 652 ALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHhcccccccHHHHHHHHHhhccc
Confidence 998854 568999999999877543
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-47 Score=429.31 Aligned_cols=250 Identities=42% Similarity=0.707 Sum_probs=231.6
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~ 495 (938)
...|+++|+||+|+++++.+|...|.+ .++|+.|+.+|+..|.|||||||||||||+||||+|+|++.+|+.+.+++++
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 456899999999999999999998887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEE
Q 002307 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (938)
Q Consensus 496 ~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVI 575 (938)
++|+|+++..+|.+|.+|+..+|||||+||||+|.++|+... .....+.+||||++|||...+.+|.||
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-----------s~~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-----------SSVSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-----------chhHHHHHHHHHHHhcccccccceEEE
Confidence 999999999999999999999999999999999999987542 233568899999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhc--ccccCCccCHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 002307 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS--KVKMSDSVDLSSYAKNLP--GWTGARLAQLVQEAAL 651 (938)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~--~~~l~~dvdL~~LA~~t~--GfSgaDL~~Lv~eA~l 651 (938)
||||+||.+|||++||||||+.++|++|+.++|.+||+.+.+ +.++..++|++.||+.+. ||||+||..||++|..
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi 731 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASI 731 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 778889999999999977 9999999999999999
Q ss_pred HHHHhCC----------------cccchhhHHHHHHhhccCC
Q 002307 652 VAVRKGH----------------ESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 652 ~A~r~~~----------------~~It~edl~~Ai~rv~~g~ 677 (938)
.|.++.- ..++..||++|+.++....
T Consensus 732 ~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 732 LALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 9987621 1256679999999886543
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-44 Score=403.83 Aligned_cols=229 Identities=44% Similarity=0.779 Sum_probs=216.4
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
...++++|+||+|++....+|.+++..+++|+.|..+|+.||+|||||||||||||+||+|+|+++++||+.+++.++++
T Consensus 182 ~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 182 FPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34458899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCC----CeE
Q 002307 497 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG----KGV 572 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~----~~V 572 (938)
.+.|++++++|++|.+|+..+|||+||||||+++++|+.. ..+.-.+.+.|||+.||++... .+|
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a-----------qreMErRiVaQLlt~mD~l~~~~~~g~~V 330 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA-----------QREMERRIVAQLLTSMDELSNEKTKGDPV 330 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH-----------HHHHHHHHHHHHHHhhhcccccccCCCCe
Confidence 9999999999999999999999999999999999998753 3333567899999999988543 679
Q ss_pred EEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 002307 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 652 (938)
Q Consensus 573 iVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~ 652 (938)
+||+|||+||.|||+|+|+||||+.|.+..|+..+|.+||+..++++.+..++|+.+||..|+||.|+||.+||.+|+..
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 002307 653 AVRK 656 (938)
Q Consensus 653 A~r~ 656 (938)
|+++
T Consensus 411 AikR 414 (802)
T KOG0733|consen 411 AIKR 414 (802)
T ss_pred HHHH
Confidence 9876
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-43 Score=365.82 Aligned_cols=253 Identities=41% Similarity=0.688 Sum_probs=241.7
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
..++.|.+++.||+|++-.|+++++.++. |.+.++|+++|+.||+|||+|||||||||+||+|+|+.....|+.+.+++
T Consensus 145 ~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 145 GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 44677999999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
|+.+|.|++...+|+.|..|+.++|+||||||||+++.+|-....+ .+.+.++.+-+||.+||||+...+|-
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtg--------adrevqril~ellnqmdgfdq~~nvk 296 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTG--------ADREVQRILIELLNQMDGFDQTTNVK 296 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccc--------ccHHHHHHHHHHHHhccCcCcccceE
Confidence 9999999999999999999999999999999999999988554443 67788999999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
||++||+.+.|||||+||||+|+.|+||+||..+++-+|.....++.+.+++|++.+..+-...|++||..+|++|.+.|
T Consensus 297 vimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~a 376 (408)
T KOG0727|consen 297 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLA 376 (408)
T ss_pred EEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccchhhHHHHHHhhcc
Q 002307 654 VRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 654 ~r~~~~~It~edl~~Ai~rv~~ 675 (938)
.|+++-.|...||++|......
T Consensus 377 vr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 377 VRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred HHhcceeeeHHHHHHHHHhhcC
Confidence 9999999999999999987764
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-43 Score=366.01 Aligned_cols=253 Identities=39% Similarity=0.705 Sum_probs=243.2
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
+++.|+.+++-|+|++.++++++++++. .++|++|..+|+..|+|+|||||||||||+||+|+|....+.|+.++++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 4566888999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
+.+|.|++..-+|++|-.|+.++|+|||+||||+++..|..+..+ ++.+.++++.+||.++|||...+++-|
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g--------gdsevqrtmlellnqldgfeatknikv 289 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG--------GDSEVQRTMLELLNQLDGFEATKNIKV 289 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC--------ccHHHHHHHHHHHHhccccccccceEE
Confidence 999999999999999999999999999999999999988765554 678899999999999999999999999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
|.|||+.+.|||||+||||+|+.|+||+|+.+.|.+||+.|.+++++...+++..+|...+|.||+++..+|.+|.+.|.
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~al 369 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYAL 369 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcccchhhHHHHHHhhccC
Q 002307 655 RKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 655 r~~~~~It~edl~~Ai~rv~~g 676 (938)
|+.+-.+|++||+-|+.+++..
T Consensus 370 rerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 370 RERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred HHhhccccHHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-43 Score=365.19 Aligned_cols=253 Identities=40% Similarity=0.708 Sum_probs=240.7
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
.+++.|.-+++||+|++.++++|.+.+.. +.+++.|..+|++||+|+|+|||||||||++|||+|...+..|+.+.++.
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ 240 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH
Confidence 45778899999999999999999988776 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
++.+|.|.+++-+|+.|+.|+..+|+||||||+|+++.+|..... .++.+.++++.+||.++|||.++..|-
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek--------~GDREVQRTMLELLNQLDGFss~~~vK 312 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK--------AGDREVQRTMLELLNQLDGFSSDDRVK 312 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccc--------cccHHHHHHHHHHHHhhcCCCCccceE
Confidence 999999999999999999999999999999999999998854321 367889999999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
|||+||+.+.|||||+|+||+|+.|+||.|+.+.|..|++.|.+++...++++++++|+.|.+|+|+++..+|-+|.+.|
T Consensus 313 viAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiA 392 (424)
T KOG0652|consen 313 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIA 392 (424)
T ss_pred EEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccchhhHHHHHHhhcc
Q 002307 654 VRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 654 ~r~~~~~It~edl~~Ai~rv~~ 675 (938)
.|++...|+.+||.++|..+..
T Consensus 393 LRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 393 LRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred HhcccccccHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-43 Score=366.24 Aligned_cols=262 Identities=40% Similarity=0.656 Sum_probs=246.5
Q ss_pred ccccccccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 410 SKAEARVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 410 ~~~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
+-....+++.|.++++||+|+.+.++.|+++++. +.+|+.|-.+|+.||+|||||||||||||++|||+|++.+..|+.
T Consensus 162 svtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfir 241 (435)
T KOG0729|consen 162 SVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIR 241 (435)
T ss_pred ceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEe
Confidence 3344567889999999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred EeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC
Q 002307 489 MAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 568 (938)
Q Consensus 489 vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~ 568 (938)
+-+|+++.+|+|+++..+|++|+.|+....||||+||||++++.|-....+ ++.+.++++.+++.++|||+.
T Consensus 242 vigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~g--------gdnevqrtmleli~qldgfdp 313 (435)
T KOG0729|consen 242 VIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAG--------GDNEVQRTMLELINQLDGFDP 313 (435)
T ss_pred ehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCC--------CcHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999887433222 566788999999999999999
Q ss_pred CCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHH
Q 002307 569 GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 569 ~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~e 648 (938)
+.++-|+.+||+|+.|||||+||||+|+.++|.+||.+.|..||+.|.+.+....++-++-+|+.++.-+|++|+.+|.+
T Consensus 314 rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcte 393 (435)
T KOG0729|consen 314 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTE 393 (435)
T ss_pred CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccchhhHHHHHHhhccCCCc
Q 002307 649 AALVAVRKGHESILSSDMDDAVDRLTVGPKR 679 (938)
Q Consensus 649 A~l~A~r~~~~~It~edl~~Ai~rv~~g~~~ 679 (938)
|.+.|++..+...+..||.+|+++++.|-.+
T Consensus 394 agmfairarrk~atekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 394 AGMFAIRARRKVATEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887654
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-43 Score=368.59 Aligned_cols=255 Identities=37% Similarity=0.677 Sum_probs=242.4
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
.++..|.-+|+||+|++.+++++++.++. |.+|+.|..+|++||+||+|||+||||||+||+|+|+.....|+.+-+++
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence 45677888999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
++.+|.|.+.+-+|.+|..|..++|+|+||||||+++.+|-....+ +..+.++++.+||.++|||+++..|-
T Consensus 255 LiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sg--------gerEiQrtmLELLNQldGFdsrgDvK 326 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG--------GEREIQRTMLELLNQLDGFDSRGDVK 326 (440)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCc--------cHHHHHHHHHHHHHhccCccccCCeE
Confidence 9999999999999999999999999999999999999988443332 56788999999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
||.|||+.+.|||||+||||+|+.|+|+.||...++.||..|..++.+..+++++.+...-..+||+||.++|.+|.++|
T Consensus 327 vimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllA 406 (440)
T KOG0726|consen 327 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLA 406 (440)
T ss_pred EEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccchhhHHHHHHhhccCC
Q 002307 654 VRKGHESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 654 ~r~~~~~It~edl~~Ai~rv~~g~ 677 (938)
.|+.+..++.+||..|.++++...
T Consensus 407 lRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 407 LRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhc
Confidence 999999999999999999998643
No 17
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-41 Score=393.04 Aligned_cols=251 Identities=38% Similarity=0.645 Sum_probs=226.6
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
.++-|+|+|+||+|++++|.++.+-|.. |++|++| ..|++...|||||||||||||++|||+|.++...|+++.++++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3567999999999999999999999997 9999999 5588999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc--CCCeE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--TGKGV 572 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~--~~~~V 572 (938)
.++|+|++++++|++|++||..+|||||+||+|.+++.|+....+ ..-..+.+.|||.||||+. ...+|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS---------GGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS---------GGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc---------cccHHHHHHHHHHHhhcccCCCCCce
Confidence 999999999999999999999999999999999999998643211 1224578999999999997 56789
Q ss_pred EEEEecCCCCcCCccccCCCccceEEeccCC-ChhhHHHHHHHHhcccccCCccCHHHHHhhCC-CCCHHHHHHHHHHHH
Q 002307 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAP-NAKGRTEILKIHASKVKMSDSVDLSSYAKNLP-GWTGARLAQLVQEAA 650 (938)
Q Consensus 573 iVIAATN~pd~LDpALlRpGRFdr~I~V~lP-d~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~-GfSgaDL~~Lv~eA~ 650 (938)
+||+||||||.|||+|+||||||+.++++++ |.+.+..+|+...++..++.++|+.++|+.++ .|||||+-.+|..|.
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~ 892 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAM 892 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999987 55668899999999999999999999999986 799999999999999
Q ss_pred HHHHHhCC-----------------cccchhhHHHHHHhhccC
Q 002307 651 LVAVRKGH-----------------ESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 651 l~A~r~~~-----------------~~It~edl~~Ai~rv~~g 676 (938)
+.|+++.- -.|+++||..+.++....
T Consensus 893 l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 893 LAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred HHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 99987621 137889999999988654
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.4e-41 Score=350.25 Aligned_cols=242 Identities=36% Similarity=0.610 Sum_probs=225.4
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
...++++|+||+|++++|+..+-++++|.+|+.|..+ .|++||+|||||||||++|+|+|+++++||+.+.+.++++
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 3457899999999999999999999999999987654 6899999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEE
Q 002307 497 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 576 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIA 576 (938)
.++|.++.+++.+++.|++.+|||+||||+|+++-+|.- ..........+|.||++|||...+.+|+.||
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRry----------QelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRY----------QELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhH----------HHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 999999999999999999999999999999999877632 1233335678999999999999999999999
Q ss_pred ecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHH-HHHHHHHHHHHH
Q 002307 577 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLA-QLVQEAALVAVR 655 (938)
Q Consensus 577 ATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~-~Lv~eA~l~A~r 655 (938)
+||+|+.||+++++ ||...|+|.+|+.++|..|++.+++++++..+.++..+++.|.|+||+||. .+++.|...|+.
T Consensus 260 aTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 260 ATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred ecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999999987 688999999999
Q ss_pred hCCcccchhhHHHHHHhh
Q 002307 656 KGHESILSSDMDDAVDRL 673 (938)
Q Consensus 656 ~~~~~It~edl~~Ai~rv 673 (938)
++++.|+.+|++.|+.+.
T Consensus 338 ed~e~v~~edie~al~k~ 355 (368)
T COG1223 338 EDREKVEREDIEKALKKE 355 (368)
T ss_pred hchhhhhHHHHHHHHHhh
Confidence 999999999999999873
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.5e-40 Score=372.45 Aligned_cols=253 Identities=41% Similarity=0.691 Sum_probs=236.1
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
..+.|+++|+||+|++.++++|++.+.+ +.+|+.|..+|+.+|+|+||+||||||||++|+++|++++.+|+.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 4567999999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
...+.|.+...++.+|..|+..+||||||||||.++.++.....+ .+.+..+.+.+++.++|++....+++|
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~--------~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG--------ADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCC--------ccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 999999999999999999999999999999999998776432211 234567789999999999988889999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
|+|||+++.+|++++||||||+.|++++|+.++|..||+.++.+.++..++++..++..|+||||+||.++|++|...|.
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcccchhhHHHHHHhhccC
Q 002307 655 RKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 655 r~~~~~It~edl~~Ai~rv~~g 676 (938)
++++..|+.+||..|++++..+
T Consensus 368 r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 368 RKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HcCCCccCHHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 20
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=355.16 Aligned_cols=248 Identities=35% Similarity=0.589 Sum_probs=224.0
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
+....++++|+||+|+.++|+-|+|.|.. +.-|+.|+.+ .+|-+|||++||||||||+||||+|.|++..||.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 45567889999999999999999998886 8999988653 467799999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCC----
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG---- 569 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~---- 569 (938)
+.++|.|++++.+|-+|+.|+.++|++|||||||+|+.+|++. ..++...+.-++||.+|||....
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s----------~EHEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS----------SEHEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc----------cchhHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999999999999999999999999999998753 14555677888999999998442
Q ss_pred CeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHH
Q 002307 570 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEA 649 (938)
Q Consensus 570 ~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA 649 (938)
+-|+|+||||.|+.||+|++| ||...|+||+|+.++|..+|+..++.....++++++.+|..++||||+||.++|++|
T Consensus 351 k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred eeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 349999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC-----------------cccchhhHHHHHHhhcc
Q 002307 650 ALVAVRKGH-----------------ESILSSDMDDAVDRLTV 675 (938)
Q Consensus 650 ~l~A~r~~~-----------------~~It~edl~~Ai~rv~~ 675 (938)
.+++.|+.. ..++..||++|+.++..
T Consensus 429 sm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 429 SMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 999988521 23778888888887754
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.4e-38 Score=361.34 Aligned_cols=256 Identities=45% Similarity=0.757 Sum_probs=237.0
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
..+.+.++|+||+|+++++++|.+.+.+ +.+|+.|..+|+.+|+|+||+||||||||++|+++|++++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 4566889999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
...+.|.+...++.+|..|+..+||||||||||.++..+.....+ ...+..+++.+++.+++++....+++|
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~--------~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTS--------GDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCC--------ccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 999999999999999999999999999999999998776543221 334567788999999999888889999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
|+|||+++.+|++++||||||+.|+|++|+.++|.+||+.++.+..+..++++..+|..|.||+|+||+++|++|...|.
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~ 353 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAI 353 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HhCCcccchhhHHHHHHhhccCCCc
Q 002307 655 RKGHESILSSDMDDAVDRLTVGPKR 679 (938)
Q Consensus 655 r~~~~~It~edl~~Ai~rv~~g~~~ 679 (938)
+++...|+.+||.+|++++..+...
T Consensus 354 ~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 354 RDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HcCCCCcCHHHHHHHHHHHhccccc
Confidence 9999999999999999999765543
No 22
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=364.59 Aligned_cols=228 Identities=40% Similarity=0.699 Sum_probs=217.4
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
...+++|+||+|+.++|+.|.+++.+ -+.|..|...+++.+.|||||||||||||+||.|+|..++..|+++.++++.+
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 44569999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEE
Q 002307 497 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 576 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIA 576 (938)
+|.|.+++++|++|.+|+..+|||||+||+|.++++|+....+. ..+.+||||++|||.+.-.+|.|+|
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV-----------TDRVVNQlLTelDG~Egl~GV~i~a 808 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV-----------TDRVVNQLLTELDGAEGLDGVYILA 808 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc-----------hHHHHHHHHHhhccccccceEEEEE
Confidence 99999999999999999999999999999999999998765554 3478999999999999999999999
Q ss_pred ecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 002307 577 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 656 (938)
Q Consensus 577 ATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~ 656 (938)
||.|||.+||||+||||+|+.++.+.|+..+|.+|++.....+.+..++|++.+|..|+|||||||+.|+..|.+.|..+
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888754
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=361.75 Aligned_cols=253 Identities=40% Similarity=0.714 Sum_probs=235.1
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
.++.|.++|+||+|++++++++.+.+.. +.+|+.|..+|+.+|+|+||+||||||||++|+++|++++.+|+.+.++++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 4566889999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
...|.|.+...++.+|..|+.+.||||||||||.++.++.....+ ...+..+++.++|.++|++....++.|
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sg--------g~~e~qr~ll~LL~~Ldg~~~~~~V~V 325 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSG--------GEKEIQRTMLELLNQLDGFDSRGDVKV 325 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCc--------ccHHHHHHHHHHHHHHhhhcccCCeEE
Confidence 999999999999999999999999999999999999776432221 334566788899999999988889999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
|+|||+++.+|++++||||||+.|+|++||.++|.+||+.++.+..+..++++..++..+.||||+||.++|++|+..|.
T Consensus 326 I~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 326 IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLAL 405 (438)
T ss_pred EEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhCCcccchhhHHHHHHhhccC
Q 002307 655 RKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 655 r~~~~~It~edl~~Ai~rv~~g 676 (938)
++++..|+.+||..|++++...
T Consensus 406 r~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 406 RERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HhcCCccCHHHHHHHHHHHHhh
Confidence 9999999999999999998653
No 24
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.5e-38 Score=333.82 Aligned_cols=204 Identities=29% Similarity=0.474 Sum_probs=167.5
Q ss_pred chhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEEEeeccccCceeEEecCCCcc
Q 002307 662 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDES 741 (938)
Q Consensus 662 t~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvtIvpRg~alG~~~~~~~~~~~ 741 (938)
|++||++|+++++.|++++...+++.+++++|+||+||||++++++.. +++.++||+|||.++|++.+.|. ++.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~-----~~v~~vsi~prg~~~G~~~~~~~-~~~ 74 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPA-----DPVSKVSIVPRGSALGFTQFTPD-EDR 74 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS--------EEEEESSTTCCCCHCCEECHH-TT-
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhccc-----ccEEEEEEecCCCcceeEEeccc-hhc
Confidence 578999999999999998778899999999999999999999999876 78999999999999999999886 444
Q ss_pred cccCCHHHHHHHHHHHhhHHHHHHHHhC--CCCCccCCChHHHHHHHHHHHHHHhcCCccccccCCCCCccccc---ccc
Q 002307 742 YMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV---KFV 816 (938)
Q Consensus 742 ~~~ttr~~l~~~I~vlLaGRAAEel~fG--~~STGAs~DDL~~AT~lAr~MV~~~GMs~~l~~~gG~~~~~~~~---~f~ 816 (938)
+.. ||.+++++|+++|||||||+++|| ++|+|+++| |++||+||++||..|||++++ |++++.... .|+
T Consensus 75 ~~~-t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~D-L~~At~iA~~mv~~~Gm~~~~----g~~~~~~~~~~~~~~ 148 (213)
T PF01434_consen 75 YIR-TRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSD-LQQATEIARKMVASYGMGDSL----GLLSYSPNDDDEVFL 148 (213)
T ss_dssp SS--BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHH-HHHHHHHHHHHHHTST-TTTT----TSS-SEEEE-S-SSS
T ss_pred ccc-cHHHHHhhHHHHHHHHHHHHhhcCcceecccchhH-HHHHHHHHHHHHHHhCCCCCC----ceeeeeccccccccc
Confidence 444 499999999999999999999999 899999877 999999999999999999988 888876543 233
Q ss_pred CCCcccCCCccCCCCCCCCCCCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 002307 817 GPRLDFEGSLYDDYGLTEPPVNFNLD----DDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFI 892 (938)
Q Consensus 817 G~~~~~~g~~~~d~~~~~~~~~~~~s----e~~a~~I~~lL~~ay~rA~~LL~~~r~~L~~LA~~LLekEtL~geEi~~I 892 (938)
|+.+ .....++ +.++++|+++|+++|++|+++|++|++.|++||++|+++++|+++||++|
T Consensus 149 ~~~~---------------~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 149 GREW---------------NSRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp -E------------------EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred cccc---------------cccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 3222 0122344 44567789999999999999999999999999999999999999999986
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-37 Score=358.77 Aligned_cols=248 Identities=46% Similarity=0.740 Sum_probs=231.1
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
....+.++|+|++|++.+|+.+++.+.+ ++.++.|...+.++++|+|||||||||||+||+|+|.+++.+|+.+.++++
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l 312 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSEL 312 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHH
Confidence 3456889999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
.++|+|+++++++.+|..|+..+||||||||+|++.+.|+....+ ...+.++++|.+|++....++|+|
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~-----------~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG-----------SGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred hccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch-----------HHHHHHHHHHHHhcCCCccCceEE
Confidence 999999999999999999999999999999999999988653221 226889999999999999999999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccc--cCCccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK--MSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 652 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~--l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~ 652 (938)
|+|||+|+.+|++++||||||+.++|++||.++|.+||+.++.+.. +..++++..+++.|.||+|+||.++|++|...
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~ 461 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALE 461 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999544 35789999999999999999999999999999
Q ss_pred HHHhC-CcccchhhHHHHHHhhc
Q 002307 653 AVRKG-HESILSSDMDDAVDRLT 674 (938)
Q Consensus 653 A~r~~-~~~It~edl~~Ai~rv~ 674 (938)
+.++. ...|+.+||.+|+.++.
T Consensus 462 ~~~~~~~~~~~~~~~~~a~~~~~ 484 (494)
T COG0464 462 ALREARRREVTLDDFLDALKKIK 484 (494)
T ss_pred HHHHhccCCccHHHHHHHHHhcC
Confidence 99988 77899999999999843
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.7e-37 Score=371.73 Aligned_cols=249 Identities=43% Similarity=0.758 Sum_probs=229.1
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
..+.++|+||+|++.+|++|.+.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 45789999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEE
Q 002307 497 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 576 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIA 576 (938)
.|+|.++..++.+|..|+...||||||||||++++.++... ......+.+++||.+||++....+++||+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~----------~~~~~~~~~~~lL~~ldg~~~~~~v~vI~ 595 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF----------DTSVTDRIVNQLLTEMDGIQELSNVVVIA 595 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC----------CccHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 99999999999999999999999999999999998775422 11234678999999999998889999999
Q ss_pred ecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 002307 577 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 656 (938)
Q Consensus 577 ATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~ 656 (938)
|||+++.||++++||||||+.|++++||.++|.+||+.+.++.++..++++..+|..|.||||+||.++|++|+..|.++
T Consensus 596 aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~ 675 (733)
T TIGR01243 596 ATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRE 675 (733)
T ss_pred eCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999874
Q ss_pred C------------------CcccchhhHHHHHHhhccC
Q 002307 657 G------------------HESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 657 ~------------------~~~It~edl~~Ai~rv~~g 676 (938)
. ...|+.+||.+|+.++...
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 676 SIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred HhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 2 1268899999999887543
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=4.8e-36 Score=337.77 Aligned_cols=250 Identities=47% Similarity=0.786 Sum_probs=231.4
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
..+.+.++|+||+|+++++++|.+.+.. +.+|+.|..+|+.+|+|+||+||||||||++|+++|++++.+|+.+.++++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 4567899999999999999999999986 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
...+.|.+...++.+|..|+...||||||||+|.++..+.....+ .+.+....+.+++.+++++....++.|
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~--------~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS--------GDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC--------ccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 999999999999999999999999999999999998766432221 344567788999999999887789999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
|+|||+++.+|++++||||||+.|+|+.|+.++|.+||+.++.+..+..++++..+++.+.||+|+||.++|++|...|.
T Consensus 265 I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 265 IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HhCCcccchhhHHHHHHhh
Q 002307 655 RKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 655 r~~~~~It~edl~~Ai~rv 673 (938)
++++..|+.+||..|++++
T Consensus 345 ~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 345 REERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HhCCCccCHHHHHHHHHHh
Confidence 9999999999999999876
No 28
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=331.35 Aligned_cols=230 Identities=38% Similarity=0.627 Sum_probs=211.1
Q ss_pred ccccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccC-CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeC
Q 002307 414 ARVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (938)
Q Consensus 414 ~~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG-~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 491 (938)
.+.+..-.++|+||+|++++++.|++.|.. ++.|++|..-+ .++++||||+||||||||++|+|+|.++|.+|+.+++
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 455677899999999999999999998886 99999996333 5789999999999999999999999999999999999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe
Q 002307 492 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (938)
Q Consensus 492 sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ 571 (938)
+.+.++|.|++.+.++.+|..|.+.+||||||||+|.+.+.|+. ..++.....-++|....||+.++.+
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s-----------~dHEa~a~mK~eFM~~WDGl~s~~~ 229 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS-----------TDHEATAMMKNEFMALWDGLSSKDS 229 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc-----------chHHHHHHHHHHHHHHhccccCCCC
Confidence 99999999999999999999999999999999999999988842 1344455566799999999977654
Q ss_pred --EEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHH
Q 002307 572 --VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEA 649 (938)
Q Consensus 572 --ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA 649 (938)
|+|+||||+|..+|.|++| |+.+.++|++|+.++|.+||+..+++.++.+++|+.++|.+|.||||.||.++|+.|
T Consensus 230 ~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 230 ERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLA 307 (386)
T ss_pred ceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 002307 650 ALVAVRK 656 (938)
Q Consensus 650 ~l~A~r~ 656 (938)
+...+++
T Consensus 308 a~~~ire 314 (386)
T KOG0737|consen 308 ALRPIRE 314 (386)
T ss_pred hHhHHHH
Confidence 9888765
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-37 Score=328.45 Aligned_cols=251 Identities=41% Similarity=0.680 Sum_probs=236.9
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
.+.+.+++|+++.|.-.+..++++.++. +.+|++|.+.|+++|+|++||||||||||++|+++|..++++|+.++.+++
T Consensus 123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 3456789999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
.+.+.|+++.-+|+.|..|+...|||||+||||++++++.... ...+.+.++++..|+.+||+++....|-+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~--------Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ 274 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEG--------TSSDREIQRTLMELLNQMDGFDTLHRVKT 274 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccc--------cchhHHHHHHHHHHHHhhccchhcccccE
Confidence 9999999999999999999999999999999999998873321 23778899999999999999999999999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
|+|||+|+.|||+|+||||+|+.+++|+|+...|..|++.|.+.+.....+|.+.+.+..+||+|+|+.+.|.+|-..|+
T Consensus 275 ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~ 354 (388)
T KOG0651|consen 275 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAI 354 (388)
T ss_pred EEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhccccccccc
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HhCCcccchhhHHHHHHhhc
Q 002307 655 RKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 655 r~~~~~It~edl~~Ai~rv~ 674 (938)
+..+..+..+|+..++.++.
T Consensus 355 ~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 355 PEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred chhhHHHhHHHHHHHHHHHH
Confidence 99999999999999988764
No 30
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.4e-35 Score=343.92 Aligned_cols=241 Identities=27% Similarity=0.418 Sum_probs=211.9
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~v 499 (938)
++++|+||+|++.+|++|.+....+ +.....+|+++|+|+||+||||||||++|+++|++++.||+.++++.+.+.++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 5778999999999999998866543 23345779999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecC
Q 002307 500 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATN 579 (938)
Q Consensus 500 G~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN 579 (938)
|.++.+++.+|..|+..+||||||||||.+...++... ......+.+++++..|+. ..++|+||||||
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~----------d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN 368 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG----------DSGTTNRVLATFITWLSE--KKSPVFVVATAN 368 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC----------CchHHHHHHHHHHHHHhc--CCCceEEEEecC
Confidence 99999999999999999999999999999876543211 122345778888888874 456899999999
Q ss_pred CCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC--CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 002307 580 RRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS--DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 657 (938)
Q Consensus 580 ~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~--~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~ 657 (938)
+++.||++++||||||+.+++++|+.++|.+||+.++.+.... .+.++..+|+.|.||||+||+++|++|...|..++
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~ 448 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK 448 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999886433 47889999999999999999999999999998765
Q ss_pred CcccchhhHHHHHHhhcc
Q 002307 658 HESILSSDMDDAVDRLTV 675 (938)
Q Consensus 658 ~~~It~edl~~Ai~rv~~ 675 (938)
..++.+|+..|+.++.+
T Consensus 449 -~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 449 -REFTTDDILLALKQFIP 465 (489)
T ss_pred -CCcCHHHHHHHHHhcCC
Confidence 56899999999998875
No 31
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=322.73 Aligned_cols=230 Identities=37% Similarity=0.615 Sum_probs=207.0
Q ss_pred ccccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc
Q 002307 414 ARVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (938)
Q Consensus 414 ~~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 492 (938)
+++.+.|+|+|+||+|++.+|+.|+|.|.. ++.|.+|.. +-+|-+||||||||||||++||+|+|.+++..|++++.+
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS 200 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 200 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH
Confidence 456788999999999999999999998876 999998853 345678999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-CCe
Q 002307 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKG 571 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-~~~ 571 (938)
+++++|.|++++-++.+|+.|+.+.|+||||||||.+++.|+++ .++...+.-.+||.+|.|... +.+
T Consensus 201 DLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en-----------EseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 201 DLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN-----------ESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC-----------chHHHHHHHHHHHHhhhccccCCCc
Confidence 99999999999999999999999999999999999999988653 233345667799999998844 578
Q ss_pred EEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 002307 572 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (938)
Q Consensus 572 ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~ 650 (938)
|+|++|||-|+.||.|++| ||++.|+||+|+...|..+|+.|+.+.+.. .+.|+..|+++|+||||+||.-+|+.|.
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999999999 999999999999999999999999887654 4568999999999999999999999999
Q ss_pred HHHHHhC
Q 002307 651 LVAVRKG 657 (938)
Q Consensus 651 l~A~r~~ 657 (938)
+.-+|+-
T Consensus 348 mePvRkv 354 (439)
T KOG0739|consen 348 MEPVRKV 354 (439)
T ss_pred hhhHHHh
Confidence 8887653
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.6e-33 Score=323.13 Aligned_cols=255 Identities=33% Similarity=0.593 Sum_probs=211.6
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------- 485 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------- 485 (938)
..+..|+++|+||+|++++++++++.+.. +.+|+.|..+|+++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34567899999999999999999999886 899999999999999999999999999999999999998654
Q ss_pred --EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHH
Q 002307 486 --FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 559 (938)
Q Consensus 486 --fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqL 559 (938)
|+.++++++...|.|.++..++.+|..|+.. .||||||||+|.++.+|+.+. .++.....+++|
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~----------s~d~e~~il~~L 321 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV----------SSDVETTVVPQL 321 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc----------cchHHHHHHHHH
Confidence 6677888999999999999999999998764 699999999999998764321 112235678999
Q ss_pred HHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcc-cccC---------CccCHHH
Q 002307 560 LIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-VKMS---------DSVDLSS 629 (938)
Q Consensus 560 L~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~-~~l~---------~dvdL~~ 629 (938)
|.+||++....+++||+|||+++.||+|++||||||++|+|++|+.++|.+||+.++.. .++. ...++..
T Consensus 322 L~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~a 401 (512)
T TIGR03689 322 LSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAA 401 (512)
T ss_pred HHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHH
Confidence 99999998888999999999999999999999999999999999999999999999864 2331 1112222
Q ss_pred HHhh-----------------------------CCCCCHHHHHHHHHHHHHHHHHh----CCcccchhhHHHHHHhhccC
Q 002307 630 YAKN-----------------------------LPGWTGARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 630 LA~~-----------------------------t~GfSgaDL~~Lv~eA~l~A~r~----~~~~It~edl~~Ai~rv~~g 676 (938)
+++. ++.+||++|+++|.+|...|+.+ +...|+.+|+..|+..-...
T Consensus 402 l~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 402 LIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred HHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 2211 34578999999999999888865 34578899999999887654
Q ss_pred CCc
Q 002307 677 PKR 679 (938)
Q Consensus 677 ~~~ 679 (938)
.+.
T Consensus 482 ~~~ 484 (512)
T TIGR03689 482 SED 484 (512)
T ss_pred ccc
Confidence 443
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-31 Score=306.66 Aligned_cols=239 Identities=40% Similarity=0.685 Sum_probs=222.7
Q ss_pred CCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~ 498 (938)
+.+. .+++|.......+++.+.+ +.+|..|..+|+++|+|+|+|||||||||.+++++|++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5667 8999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCC-CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe
Q 002307 499 VGVGSARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (938)
Q Consensus 499 vG~~~~~vr~lF~~Ar~~~-P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA 577 (938)
.|++++.+|..|+.|.+++ |+||||||||+++++|... +.-..++..+++..||+.....+++||++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~------------~~~e~Rv~sqlltL~dg~~~~~~vivl~a 326 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA------------DDVESRVVSQLLTLLDGLKPDAKVIVLAA 326 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc------------chHHHHHHHHHHHHHhhCcCcCcEEEEEe
Confidence 9999999999999999999 9999999999999987542 11245778899999999998899999999
Q ss_pred cCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 002307 578 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 657 (938)
Q Consensus 578 TN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~ 657 (938)
||+|+.||++++| ||||+.+.+..|+..+|.+|++.+.+++++..++++..+|..++||+|+||.++|++|...+.++
T Consensus 327 tnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~- 404 (693)
T KOG0730|consen 327 TNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR- 404 (693)
T ss_pred cCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-
Confidence 9999999999999 99999999999999999999999999999988899999999999999999999999999999887
Q ss_pred CcccchhhHHHHHHhhccCC
Q 002307 658 HESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 658 ~~~It~edl~~Ai~rv~~g~ 677 (938)
+++++..|...+....
T Consensus 405 ----~~~~~~~A~~~i~psa 420 (693)
T KOG0730|consen 405 ----TLEIFQEALMGIRPSA 420 (693)
T ss_pred ----hHHHHHHHHhcCCchh
Confidence 7888888887765543
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=298.50 Aligned_cols=249 Identities=33% Similarity=0.567 Sum_probs=213.7
Q ss_pred CCCCcccCcc--cCcHHHHHHHHH--HHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-CEEEEeCc
Q 002307 418 GSTGVKFSDV--AGIDEAVEELQE--LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQMAGS 492 (938)
Q Consensus 418 ~~~~v~F~dV--vG~deak~eL~e--iV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~-pfi~vs~s 492 (938)
-.|+.+|+++ +|++..-..+-+ +...+-.|+...++|++.-+|+|||||||||||++||.|..-++. +--.++++
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 4578899984 588887666633 334477899999999999999999999999999999999998854 44568999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhC--------CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc
Q 002307 493 EFVEVLVGVGSARIRDLFKRAKVN--------KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 564 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar~~--------~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD 564 (938)
++.++|+|++++++|.+|+.|... .-.||++||||+++.+|+...++ ..-..+.+||||.-||
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~---------TGVhD~VVNQLLsKmD 362 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS---------TGVHDTVVNQLLSKMD 362 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC---------CCccHHHHHHHHHhcc
Confidence 999999999999999999998431 22499999999999998765433 1224578999999999
Q ss_pred CCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhccc----ccCCccCHHHHHhhCCCCCHH
Q 002307 565 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV----KMSDSVDLSSYAKNLPGWTGA 640 (938)
Q Consensus 565 g~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~----~l~~dvdL~~LA~~t~GfSga 640 (938)
|.+.-++++||+-|||.|.+|+||+|||||..++++.+||...|.+||+.|..++ .+..++|+.++|+.|..||||
T Consensus 363 GVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGA 442 (744)
T KOG0741|consen 363 GVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGA 442 (744)
T ss_pred cHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchh
Confidence 9999999999999999999999999999999999999999999999999998765 367899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC---------------CcccchhhHHHHHHhhcc
Q 002307 641 RLAQLVQEAALVAVRKG---------------HESILSSDMDDAVDRLTV 675 (938)
Q Consensus 641 DL~~Lv~eA~l~A~r~~---------------~~~It~edl~~Ai~rv~~ 675 (938)
+|+.+|+.|...|..+. .-.|+.+||..|++.+.+
T Consensus 443 EleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 443 ELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 99999999998887551 124899999999997754
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=2.3e-30 Score=286.16 Aligned_cols=262 Identities=19% Similarity=0.195 Sum_probs=198.6
Q ss_pred CCcccCcc-cCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 420 TGVKFSDV-AGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 420 ~~v~F~dV-vG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
..-+|+++ .|+--.+.-+..++.. .++- ...+|+++|.+++||||||||||++|+++|++++++|+.++++++.+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 44568888 5776666666655543 2221 123678999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHh-----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHH-HHHHHHHhcCC-----
Q 002307 498 LVGVGSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT-LNQLLIELDGF----- 566 (938)
Q Consensus 498 ~vG~~~~~vr~lF~~Ar~-----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~-LnqLL~eLDg~----- 566 (938)
|+|++++.+|.+|..|+. .+||||||||||+++++++... .....+. ..+|+..+|+.
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~-----------~tv~~qiV~~tLLnl~D~p~~v~l 256 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ-----------YTVNNQMVNGTLMNIADNPTNVSL 256 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC-----------cchHHHHHHHHHHHHhcCCccccc
Confidence 999999999999999975 4799999999999998875321 1112233 36888887752
Q ss_pred -------cCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCC---
Q 002307 567 -------DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG--- 636 (938)
Q Consensus 567 -------~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~G--- 636 (938)
....+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..+. ..++..++..++|
T Consensus 257 ~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 257 GGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPL 333 (413)
T ss_pred cccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCc
Confidence 34567999999999999999999999999975 4899999999999999988765 5788999999887
Q ss_pred -CCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhh
Q 002307 637 -WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 705 (938)
Q Consensus 637 -fSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~l 705 (938)
|.|+--..+..++...-+.+- ..+.+ -.+++ +..+..+............-|.||.++..-
T Consensus 334 Df~GAlrar~yd~~v~~~i~~~----g~~~~---~~~l~-~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq 395 (413)
T PLN00020 334 DFFGALRARVYDDEVRKWIAEV----GVENL---GKKLV-NSKKGPPTFEPPKMTLEKLLEYGNMLVREQ 395 (413)
T ss_pred hhhhHHHHHHHHHHHHHHHHHh----hHHHH---HHHHh-cCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 567666666666655443321 12222 22222 233334455556666778899999998753
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2.3e-30 Score=315.63 Aligned_cols=247 Identities=44% Similarity=0.749 Sum_probs=223.1
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
.+.++|+||+|++++++.+++++.. +++|+.|+.+|+.+|+|+||+||||||||++|+++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4789999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe
Q 002307 498 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (938)
Q Consensus 498 ~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA 577 (938)
+.|.....++.+|..|....|+||||||||.+..+++...+ ......+++|+..|+++.....++||++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~-----------~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG-----------EVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc-----------hHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 99999999999999999999999999999999987653211 1224577889999999888888999999
Q ss_pred cCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 002307 578 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 657 (938)
Q Consensus 578 TN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~ 657 (938)
||+++.+|++++|+|||++.+.+++|+.++|.+||+.+.+...+..+.++..++..+.||+++|+..++++|+..+.++.
T Consensus 321 tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~ 400 (733)
T TIGR01243 321 TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRF 400 (733)
T ss_pred cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999998887652
Q ss_pred -------------------CcccchhhHHHHHHhhccC
Q 002307 658 -------------------HESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 658 -------------------~~~It~edl~~Ai~rv~~g 676 (938)
...++.+|+..|+..+...
T Consensus 401 ~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 401 IREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred hhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence 1246788999998877543
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=315.64 Aligned_cols=251 Identities=38% Similarity=0.650 Sum_probs=223.9
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeC
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 491 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~ 491 (938)
....++|++|+|++..++.|+|.|.. |..|+.|..+++.||+|||++||||||||+.|+|+|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34688999999999999999999987 999999999999999999999999999999999999987 467788889
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe
Q 002307 492 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (938)
Q Consensus 492 sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ 571 (938)
++..++|+|+.+..++.+|+.|+++.|+|||+||||-+++.|+.. ..+...+.+..||..|||++....
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-----------qEqih~SIvSTLLaLmdGldsRgq 406 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-----------QEQIHASIVSTLLALMDGLDSRGQ 406 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-----------HHHhhhhHHHHHHHhccCCCCCCc
Confidence 999999999999999999999999999999999999999988542 445567788899999999999999
Q ss_pred EEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 002307 572 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (938)
Q Consensus 572 ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~ 650 (938)
|+||+|||+++.+||||+||||||+.+++++|+.+.|..|+..|.++-.-. ...-+..+|..+.||-|+||+.+|.+|+
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998776522 2223678999999999999999999999
Q ss_pred HHHHHhCC----------------cccchhhHHHHHHhhccCCCc
Q 002307 651 LVAVRKGH----------------ESILSSDMDDAVDRLTVGPKR 679 (938)
Q Consensus 651 l~A~r~~~----------------~~It~edl~~Ai~rv~~g~~~ 679 (938)
+.+.++.- ..+...||-.|+.+......+
T Consensus 487 l~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 487 LIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred hhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 99987632 236778888888888766544
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-29 Score=282.87 Aligned_cols=247 Identities=34% Similarity=0.530 Sum_probs=211.5
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
+....+.+.|+|+.|++.+|+.+.+.+.+ +..|+.|..+. .+++|+||.||||||||+|++|||.|++..|+.+++++
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHH
Confidence 44566789999999999999999999998 67799987653 56689999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC--CCe
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT--GKG 571 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~--~~~ 571 (938)
+.++|+|.++..++.+|.-|+..+|+|+||||||.+..+|... .++...+...++|..+++... +++
T Consensus 222 LtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~-----------e~e~srr~ktefLiq~~~~~s~~~dr 290 (428)
T KOG0740|consen 222 LTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN-----------EHESSRRLKTEFLLQFDGKNSAPDDR 290 (428)
T ss_pred hhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc-----------ccccchhhhhHHHhhhccccCCCCCe
Confidence 9999999999999999999999999999999999999888442 233345667788888887643 468
Q ss_pred EEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhccccc-CCccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 002307 572 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM-SDSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (938)
Q Consensus 572 ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l-~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~ 650 (938)
|+||+|||+|+.+|.+++| ||.+.++|++|+.+.|..+|+..+.+.+. ..+.++..+++.|+|||+.||.++|.+|+
T Consensus 291 vlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~ 368 (428)
T KOG0740|consen 291 VLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAA 368 (428)
T ss_pred EEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 9999999999999999999 99999999999999999999999987632 35578999999999999999999999998
Q ss_pred HHHHHhCC-------------cccchhhHHHHHHhhcc
Q 002307 651 LVAVRKGH-------------ESILSSDMDDAVDRLTV 675 (938)
Q Consensus 651 l~A~r~~~-------------~~It~edl~~Ai~rv~~ 675 (938)
..-.+... ..|+..|+..++..+-.
T Consensus 369 ~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 369 MGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred cCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcc
Confidence 65544322 34666777777766544
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=1.1e-19 Score=199.39 Aligned_cols=211 Identities=17% Similarity=0.262 Sum_probs=157.7
Q ss_pred cCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCC---ceEEEEcCCCchHHHHHHHHHHhc-------CCCEEEEeCch
Q 002307 424 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPP---HGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSE 493 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p---~GVLL~GPPGTGKT~LArALA~el-------g~pfi~vs~se 493 (938)
+++++|++++|+++.+++.++..+..+...|..++ .++||+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 35799999999999999988777777777887654 348999999999999999999875 24799999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+...+.|..+...+.+|+.|. ++||||||+|.+...+.. .+.....++.|+..|+. ...+++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-------------~~~~~e~~~~L~~~me~--~~~~~~ 163 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-------------RDYGSEAIEILLQVMEN--QRDDLV 163 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-------------cchHHHHHHHHHHHHhc--CCCCEE
Confidence 999999988878888888764 469999999998643211 11123456677777763 335678
Q ss_pred EEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-HHHH----Hhh--CCCC-CHH
Q 002307 574 FLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSY----AKN--LPGW-TGA 640 (938)
Q Consensus 574 VIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~L----A~~--t~Gf-Sga 640 (938)
||++++... .++|++.+ ||+.+|+|++++.+++.+|++.++.+....-+.+ ...+ .+. .+.| +++
T Consensus 164 vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR 241 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANAR 241 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHH
Confidence 887776422 34689998 9999999999999999999999998654332111 2222 221 2333 489
Q ss_pred HHHHHHHHHHHHHH
Q 002307 641 RLAQLVQEAALVAV 654 (938)
Q Consensus 641 DL~~Lv~eA~l~A~ 654 (938)
++++++.+|...-.
T Consensus 242 ~vrn~ve~~~~~~~ 255 (287)
T CHL00181 242 SVRNALDRARMRQA 255 (287)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876543
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=1.4e-19 Score=195.35 Aligned_cols=212 Identities=18% Similarity=0.273 Sum_probs=156.0
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCC---ceEEEEcCCCchHHHHHHHHHHhc-------CCCEEEEeCc
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPP---HGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGS 492 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p---~GVLL~GPPGTGKT~LArALA~el-------g~pfi~vs~s 492 (938)
.+++++|++++|+.+++++.+..........|..++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467899999999999999998655444445665533 468999999999999999999864 3478899999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeE
Q 002307 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~V 572 (938)
++...++|.....++++|..|. ++||||||+|.|....+ .......++.++..|+.. ...+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~--------------~~~~~~~i~~Ll~~~e~~--~~~~ 144 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE--------------KDFGKEAIDTLVKGMEDN--RNEF 144 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc--------------cchHHHHHHHHHHHHhcc--CCCE
Confidence 9999999999888999998764 57999999999863211 111234567788888743 3456
Q ss_pred EEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhh---------CCCC
Q 002307 573 IFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN---------LPGW 637 (938)
Q Consensus 573 iVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~---------t~Gf 637 (938)
++|++++..+ .++|++.+ ||+..|+++.++.+++.+|++.++......-+.+ +..++.. ....
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~g 222 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFS 222 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCc
Confidence 6665554322 47889998 9999999999999999999999987654332212 2222211 1123
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 002307 638 TGARLAQLVQEAALVAVR 655 (938)
Q Consensus 638 SgaDL~~Lv~eA~l~A~r 655 (938)
+++.+.|++..|......
T Consensus 223 n~R~~~n~~e~a~~~~~~ 240 (261)
T TIGR02881 223 NARYVRNIIEKAIRRQAV 240 (261)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999988766543
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=8.4e-20 Score=199.99 Aligned_cols=210 Identities=17% Similarity=0.260 Sum_probs=160.5
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCC---CceEEEEcCCCchHHHHHHHHHHhcC-------CCEEEEeCchh
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKP---PHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFYQMAGSEF 494 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~---p~GVLL~GPPGTGKT~LArALA~elg-------~pfi~vs~sel 494 (938)
++++|++++|+++.+++.++..++.+.+.|+.+ ..+++|+||||||||++|+++|+.+. .+|+.++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 369999999999999999988888888888764 34899999999999999999988762 37999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
...+.|.+...++.+|+.|. +++|||||+|.+.+.+.. .......++.|+..|+. ...+++|
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~-------------~~~~~~~~~~Ll~~le~--~~~~~~v 163 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE-------------RDYGQEAIEILLQVMEN--QRDDLVV 163 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc-------------cchHHHHHHHHHHHHhc--CCCCEEE
Confidence 99999988888888888764 479999999998643211 11123455677777763 3356788
Q ss_pred EEecCCC--C---cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhh--------CCCCCHH
Q 002307 575 LAATNRR--D---LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN--------LPGWTGA 640 (938)
Q Consensus 575 IAATN~p--d---~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~--------t~GfSga 640 (938)
|++++.. + .++|++.+ ||+..|++++++.+++..|+++++.+....-+.+ +..+... ..| +++
T Consensus 164 I~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~G-N~R 240 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFA-NAR 240 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCC-hHH
Confidence 8887642 3 35899999 9999999999999999999999998754321112 2223222 234 789
Q ss_pred HHHHHHHHHHHHHHH
Q 002307 641 RLAQLVQEAALVAVR 655 (938)
Q Consensus 641 DL~~Lv~eA~l~A~r 655 (938)
++++++..+...-..
T Consensus 241 ~lrn~ve~~~~~~~~ 255 (284)
T TIGR02880 241 SIRNAIDRARLRQAN 255 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998766543
No 42
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.9e-19 Score=198.48 Aligned_cols=234 Identities=26% Similarity=0.389 Sum_probs=175.9
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG 500 (938)
.-.|++|+-......++.++...-.|... .-.+-++||+|||||||||++|+-||...|..+-.+.+.+..- +-.
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~ 425 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGA 425 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cch
Confidence 34489999999989999888776665543 2346689999999999999999999999999988777765422 223
Q ss_pred hhhHHHHHHHHHHHhCCC-eEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecC
Q 002307 501 VGSARIRDLFKRAKVNKP-SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATN 579 (938)
Q Consensus 501 ~~~~~vr~lF~~Ar~~~P-~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN 579 (938)
.+...+..+|+-|++... -+|||||.|++...|... ...+.....+|.||-.-. +....++++.+||
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt----------ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtN 493 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT----------YMSEAQRSALNALLFRTG--DQSRDIVLVLATN 493 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh----------hhcHHHHHHHHHHHHHhc--ccccceEEEeccC
Confidence 345678899999977544 488999999999877542 134456678888875432 3456788888999
Q ss_pred CCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-----------------------CccC----HHHHHh
Q 002307 580 RRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----------------------DSVD----LSSYAK 632 (938)
Q Consensus 580 ~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-----------------------~dvd----L~~LA~ 632 (938)
+|..+|.++-. |||..|+|++|..++|..||..|+.+.-.. ...+ +.+.|+
T Consensus 494 rpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 494 RPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 99999999998 999999999999999999999988753211 0112 567789
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 633 NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 633 ~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
.|.||||++|..|+-.-...+.-.....++...|++.++..
T Consensus 572 kTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~yk 612 (630)
T KOG0742|consen 572 KTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYK 612 (630)
T ss_pred hccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 99999999999998665544444444556666666655543
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=7e-20 Score=174.35 Aligned_cols=130 Identities=46% Similarity=0.734 Sum_probs=113.7
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCC-CeEEEEcCcchhhhhhcCccCC
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKD 539 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~-P~ILfIDEIDaL~~~r~~~~~~ 539 (938)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+.....++.+|..++... ||||||||+|.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~---- 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQP---- 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCST----
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccc----
Confidence 699999999999999999999999999999999998888889999999999999887 999999999999887521
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHhcCCcCC-CeEEEEEecCCCCcCCccccCCCccceEEeccC
Q 002307 540 TTDHLYNAATQERETTLNQLLIELDGFDTG-KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 602 (938)
Q Consensus 540 ~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~-~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~l 602 (938)
.........++.|+..++..... .+++||++||.++.++++++| +||+..|++++
T Consensus 77 -------~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 -------SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp -------SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred -------ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 13344566788888888877654 569999999999999999998 89999999874
No 44
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.4e-18 Score=195.70 Aligned_cols=212 Identities=25% Similarity=0.342 Sum_probs=159.5
Q ss_pred CCcccCcccCcHHHHHHHH-HHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQ-ELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~-eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~ 498 (938)
.+-+|+.|+=-.+.|+++. ++.++++..+-|++.|..=.+|.|||||||||||+++.|+|+.++..++-++.++.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v---- 271 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV---- 271 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc----
Confidence 3478999998888888775 56678999999999999999999999999999999999999999999888876653
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCC--eEEEEE
Q 002307 499 VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK--GVIFLA 576 (938)
Q Consensus 499 vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~--~ViVIA 576 (938)
+.... ++.++..+. ..+||+|+|||+-..-+........+. ......-++..||..+||+-+.. --|||.
T Consensus 272 -~~n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~----~~~~~~VTlSGLLNfiDGlwSscg~ERIivF 343 (457)
T KOG0743|consen 272 -KLDSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENF----EGDLSRVTLSGLLNFLDGLWSSCGDERIIVF 343 (457)
T ss_pred -cCcHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccc----cCCcceeehHHhhhhhccccccCCCceEEEE
Confidence 22223 777776544 346999999998654322111100000 00112357889999999986544 578888
Q ss_pred ecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCC--CCHHHHHHH
Q 002307 577 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG--WTGARLAQL 645 (938)
Q Consensus 577 ATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~G--fSgaDL~~L 645 (938)
|||+++.|||||+||||+|.+|+++.-+.++-+.++..++.... +..-+.++.+...+ .|+||++..
T Consensus 344 TTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 344 TTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred ecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999999999986532 12224555554444 489998765
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.4e-18 Score=182.73 Aligned_cols=238 Identities=21% Similarity=0.235 Sum_probs=173.4
Q ss_pred cCcccCcHHHHHHHHHHHHH-hcCchhhhcc-CCCCCceEEEEcCCCchHHHHHHHHHHhcC---------CCEEEEeCc
Q 002307 424 FSDVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGS 492 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~-Lk~pe~~~~l-G~~~p~GVLL~GPPGTGKT~LArALA~elg---------~pfi~vs~s 492 (938)
|+.++--...|++|...+.. +.-.+.-..- =+.-.+-+||+||||||||+|+||+|+.+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 66666667788888776654 3322211000 123345699999999999999999999873 356899999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhC---CC--eEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc
Q 002307 493 EFVEVLVGVGSARIRDLFKRAKVN---KP--SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar~~---~P--~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~ 567 (938)
.+.++|.+++.+.+..+|++.... .. ..++|||+++++..|.....+. ......+.+|.+|++||.+.
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~-------EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRN-------EPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCC-------CCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999876432 22 3567999999998885433221 23345688999999999999
Q ss_pred CCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccc---cC----------CccC-----HHH
Q 002307 568 TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK---MS----------DSVD-----LSS 629 (938)
Q Consensus 568 ~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~---l~----------~dvd-----L~~ 629 (938)
...+|++++|+|-.+.+|.|+.. |-|-+.++++|+...+.+|++.++..+- +- .... ...
T Consensus 294 ~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~ 371 (423)
T KOG0744|consen 294 RYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNI 371 (423)
T ss_pred cCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHH
Confidence 99999999999999999999999 9999999999999999999998876421 00 0011 122
Q ss_pred HHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHh
Q 002307 630 YAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 630 LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~r 672 (938)
++.. +.|.||+-|+.|=--|..... ....|+.+++..|+-.
T Consensus 372 ~~~~~~~gLSGRtlrkLP~Laha~y~--~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 372 LIELSTVGLSGRTLRKLPLLAHAEYF--RTFTVDLSNFLLALLE 413 (423)
T ss_pred HHHHhhcCCccchHhhhhHHHHHhcc--CCCccChHHHHHHHHH
Confidence 2222 579999999887554443322 2246787777766543
No 46
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.8e-17 Score=194.32 Aligned_cols=231 Identities=26% Similarity=0.396 Sum_probs=183.3
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHH
Q 002307 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARI 506 (938)
Q Consensus 427 VvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~v 506 (938)
..+.+.....+..+...-+.|. ..+.+..-.+||+|+||||||++++++|.++|.+++.++|.++.....+..+.++
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl 479 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKL 479 (953)
T ss_pred CccchHHHHHHHHHhCcccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHH
Confidence 3455555443433333222222 2234445579999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC-cCCCeEEEEEecCCCCcCC
Q 002307 507 RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-DTGKGVIFLAATNRRDLLD 585 (938)
Q Consensus 507 r~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~-~~~~~ViVIAATN~pd~LD 585 (938)
...|.+|+...|+||||-++|.++.++.++ .+......++.++. +|.+ ....+++||++|+..+.++
T Consensus 480 ~~~f~~a~~~~pavifl~~~dvl~id~dgg-----------ed~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp 547 (953)
T KOG0736|consen 480 QAIFSRARRCSPAVLFLRNLDVLGIDQDGG-----------EDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLP 547 (953)
T ss_pred HHHHHHHhhcCceEEEEeccceeeecCCCc-----------hhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCC
Confidence 999999999999999999999998654331 33345566666666 3333 3567899999999999999
Q ss_pred ccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH---hC-----
Q 002307 586 PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR---KG----- 657 (938)
Q Consensus 586 pALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r---~~----- 657 (938)
+.+++ -|-..|.++.|+.++|.+||+.++....+..++.+..+|..|.||+.+|++.++..+-..+.. +.
T Consensus 548 ~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~ 625 (953)
T KOG0736|consen 548 ADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGG 625 (953)
T ss_pred HHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhccccc
Confidence 99998 677799999999999999999999999999999999999999999999999998776222221 11
Q ss_pred ------------CcccchhhHHHHHHhhc
Q 002307 658 ------------HESILSSDMDDAVDRLT 674 (938)
Q Consensus 658 ------------~~~It~edl~~Ai~rv~ 674 (938)
...++++||..|+.+..
T Consensus 626 ~~~~~~~~~~~~~~~l~~edf~kals~~~ 654 (953)
T KOG0736|consen 626 LQEEDEGELCAAGFLLTEEDFDKALSRLQ 654 (953)
T ss_pred chhccccccccccceecHHHHHHHHHHHH
Confidence 14589999999999753
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=4.6e-17 Score=178.75 Aligned_cols=214 Identities=23% Similarity=0.296 Sum_probs=155.1
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhh
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVG 502 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~ 502 (938)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||+||+++|++++.++....++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6899999999999998887643322 134567999999999999999999999999887766543211
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh------c-CC------cCC
Q 002307 503 SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL------D-GF------DTG 569 (938)
Q Consensus 503 ~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL------D-g~------~~~ 569 (938)
...+...+... ..+.+|||||||.+....+ ..+..++... + +. ...
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~-------------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 127 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE-------------------ELLYPAMEDFRLDIVIGKGPSARSVRLDL 127 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH-------------------HHhhHHHhhhheeeeeccCccccceeecC
Confidence 11222333222 3567999999999864321 1111111110 0 00 011
Q ss_pred CeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhCCCCCHHHHHHHHHH
Q 002307 570 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 570 ~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t~GfSgaDL~~Lv~e 648 (938)
.++++|++||++..+++++++ ||...+.+++|+.+++.++++..+......- +..+..+++.+.| +++.+.++++.
T Consensus 128 ~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~ 204 (305)
T TIGR00635 128 PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRR 204 (305)
T ss_pred CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 347889999999999999988 9998999999999999999998887654432 2236778888888 67888999998
Q ss_pred HHHHHHHhCCcccchhhHHHHHHhh
Q 002307 649 AALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 649 A~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
+...|...+...|+.+++..+++..
T Consensus 205 ~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 205 VRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 8878766676789999999999873
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.75 E-value=4.9e-17 Score=181.27 Aligned_cols=216 Identities=25% Similarity=0.296 Sum_probs=160.8
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG 500 (938)
+.+|++++|+++.++.+..++...+.+ ..++.++||+||||||||++|+++|++++..+...+++.+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~---- 89 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK---- 89 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC----
Confidence 458999999999999999888754322 235678999999999999999999999999988777653321
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh------cC-Cc------
Q 002307 501 VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL------DG-FD------ 567 (938)
Q Consensus 501 ~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL------Dg-~~------ 567 (938)
...+..++... ..++||||||||.+.... +..+..++... +. ..
T Consensus 90 --~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-------------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~ 146 (328)
T PRK00080 90 --PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-------------------EEILYPAMEDFRLDIMIGKGPAARSIRL 146 (328)
T ss_pred --hHHHHHHHHhc--ccCCEEEEecHhhcchHH-------------------HHHHHHHHHhcceeeeeccCccccceee
Confidence 12233444332 356799999999975321 11122222211 10 00
Q ss_pred CCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCCCCHHHHHHHH
Q 002307 568 TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 568 ~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~GfSgaDL~~Lv 646 (938)
.-.++.+|++||++..++++|++ ||...+.++.|+.+++.+|++..+....+.-+ ..+..+++.+.| +++.+.+++
T Consensus 147 ~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l 223 (328)
T PRK00080 147 DLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLL 223 (328)
T ss_pred cCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHH
Confidence 11347889999999999999988 99999999999999999999998877654422 236788888888 689999999
Q ss_pred HHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 647 QEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 647 ~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
+.+...|..++...|+.+++..+++..
T Consensus 224 ~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 224 RRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 998888877777789999999999765
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1e-16 Score=186.46 Aligned_cols=263 Identities=21% Similarity=0.228 Sum_probs=189.9
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC----CCEEEEeCchhHHHHhh
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAGSEFVEVLVG 500 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg----~pfi~vs~sel~~~~vG 500 (938)
.|++-...+|++..+ ....| +-.+.+|||+||+|||||.|+++++.+.. +.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566666777776654 22222 33456899999999999999999999874 56778899988777666
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCC
Q 002307 501 VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR 580 (938)
Q Consensus 501 ~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~ 580 (938)
...+-++.+|..|.+++|+||+||++|.|.+..+. .+++.+. ........+|++....- ..+..+.|||+.+.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~----~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe 550 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGV----VSERLAAFLNQVIKIYL--KRNRKIAVIATGQE 550 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchH----HHHHHHHHHHHHHHHHH--ccCcEEEEEEechh
Confidence 67777889999999999999999999999873211 1111111 11222334444444332 34556899999999
Q ss_pred CCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh---
Q 002307 581 RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK--- 656 (938)
Q Consensus 581 pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~--- 656 (938)
...+++.|.+|++|+.++.++.|+..+|.+||++.+++.... ...|++-++..|+||...|+.-++.+|...|..+
T Consensus 551 ~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris 630 (952)
T KOG0735|consen 551 LQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS 630 (952)
T ss_pred hhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999875522 2234566999999999999999999999988732
Q ss_pred -CCcccchhhHHHHHHhhccCCCccCcccccc--cc--hhhhHHHHHHHHHHhh
Q 002307 657 -GHESILSSDMDDAVDRLTVGPKRRGIELGNQ--GQ--SRRAATEVGVAMISHL 705 (938)
Q Consensus 657 -~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~--e~--~~iA~HEaGhAvv~~l 705 (938)
+...++.++|.++++....-.-+ ...+... .+ .+-..||+-.++-..+
T Consensus 631 ~~~klltke~f~ksL~~F~P~aLR-~ik~~k~tgi~w~digg~~~~k~~l~~~i 683 (952)
T KOG0735|consen 631 NGPKLLTKELFEKSLKDFVPLALR-GIKLVKSTGIRWEDIGGLFEAKKVLEEVI 683 (952)
T ss_pred cCcccchHHHHHHHHHhcChHHhh-hccccccCCCCceecccHHHHHHHHHHHH
Confidence 22368999999999886543211 1111111 11 1236777777766554
No 50
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.4e-16 Score=186.82 Aligned_cols=219 Identities=44% Similarity=0.726 Sum_probs=196.1
Q ss_pred hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEE
Q 002307 444 LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFI 523 (938)
Q Consensus 444 Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfI 523 (938)
+..++.++.++..++++++++||||||||++++++|.+ +..+..+++++....+.|....+.+.+|..+...+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677888999999999999999999999999999999 66668889999999999999999999999999999999999
Q ss_pred cCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCC
Q 002307 524 DEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAP 603 (938)
Q Consensus 524 DEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lP 603 (938)
||+|.+.+.+... ........+.+++..+++..... +++++.||++..+|+++++||||++.+.+..|
T Consensus 83 d~~~~~~~~~~~~-----------~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 83 DEIDALAPKRSSD-----------QGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred chhhhcccCcccc-----------ccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCC
Confidence 9999999887651 22234567888899999888445 99999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC------CcccchhhHHHHHHhhcc
Q 002307 604 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG------HESILSSDMDDAVDRLTV 675 (938)
Q Consensus 604 d~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~------~~~It~edl~~Ai~rv~~ 675 (938)
+...+.+|+..+........+.++..++..+.|++++++..++.++...+.++. ...++.+++.+++.++..
T Consensus 151 ~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred CHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 999999999999988888888899999999999999999999999999988875 345788999999999865
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.72 E-value=2e-16 Score=166.42 Aligned_cols=192 Identities=24% Similarity=0.353 Sum_probs=129.2
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~v 499 (938)
.+.+|+|++|++++++.+.-++...+... ....++|||||||+|||+||+.||++++.+|...+++.+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 45589999999999999988877643221 23347999999999999999999999999999998865321
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC--------cCC--
Q 002307 500 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DTG-- 569 (938)
Q Consensus 500 G~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~--------~~~-- 569 (938)
...+..++.... ...||||||||.+.... +. .|+..|+.+ ..+
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRlnk~~-------------------qe---~LlpamEd~~idiiiG~g~~ar 141 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRLNKAQ-------------------QE---ILLPAMEDGKIDIIIGKGPNAR 141 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC--HHH-------------------HH---HHHHHHHCSEEEEEBSSSSS-B
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhccHHH-------------------HH---HHHHHhccCeEEEEeccccccc
Confidence 222344444433 45699999999976432 22 334444322 111
Q ss_pred ------CeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCCCCHHHH
Q 002307 570 ------KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARL 642 (938)
Q Consensus 570 ------~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~GfSgaDL 642 (938)
..+.+|+||++...|.+.|+. ||.....+..++.++..+|++......++.-+.+ ...+|+++.| +++-.
T Consensus 142 ~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiA 218 (233)
T PF05496_consen 142 SIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIA 218 (233)
T ss_dssp EEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHH
T ss_pred eeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHH
Confidence 347899999999999999998 9999999999999999999998877766553333 6789999988 89988
Q ss_pred HHHHHHHHH
Q 002307 643 AQLVQEAAL 651 (938)
Q Consensus 643 ~~Lv~eA~l 651 (938)
.++++++..
T Consensus 219 nrll~rvrD 227 (233)
T PF05496_consen 219 NRLLRRVRD 227 (233)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 888887653
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.68 E-value=4.8e-16 Score=190.32 Aligned_cols=221 Identities=19% Similarity=0.299 Sum_probs=160.8
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeCc
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGS 492 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~s 492 (938)
++++++|.++..+.+.+++. . +...+++|+||||||||++|+++|.++ +..++.++++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~---~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~ 247 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLC---R---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG 247 (731)
T ss_pred CCCcccCcHHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH
Confidence 67899999998776655442 1 234579999999999999999999987 6778999988
Q ss_pred hhH--HHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCC
Q 002307 493 EFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (938)
Q Consensus 493 el~--~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~ 570 (938)
.+. ..+.|..+.+++.+|+.+....|+||||||||.+.+.+.... + ..... +.|...+ .+.
T Consensus 248 ~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~-~---------~~~~~---~~L~~~l----~~g 310 (731)
T TIGR02639 248 SLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG-G---------SMDAS---NLLKPAL----SSG 310 (731)
T ss_pred HHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC-c---------cHHHH---HHHHHHH----hCC
Confidence 887 368889999999999999888899999999999986543211 1 01111 2233333 245
Q ss_pred eEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccc----cC-CccCHHHHHhhCCCC---
Q 002307 571 GVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK----MS-DSVDLSSYAKNLPGW--- 637 (938)
Q Consensus 571 ~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~----l~-~dvdL~~LA~~t~Gf--- 637 (938)
.+.+|++||..+ ..|+++.| ||. .|.++.|+.+++.+||+....... +. .+..+..++..+..|
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 789999999743 57999999 997 799999999999999997765422 11 222355566655444
Q ss_pred --CHHHHHHHHHHHHHHHHHh----CCcccchhhHHHHHHhhcc
Q 002307 638 --TGARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 638 --SgaDL~~Lv~eA~l~A~r~----~~~~It~edl~~Ai~rv~~ 675 (938)
-+.....++++|+....-+ ....|+.+|+..++.+...
T Consensus 388 r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 388 RFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred ccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 3455567778877644322 2345999999999998753
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=1e-15 Score=163.98 Aligned_cols=218 Identities=26% Similarity=0.323 Sum_probs=171.1
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~v 499 (938)
.+-+|+|.+|++++|+.|.-++...+... ....++||+||||.|||+||+.+|+++|+.+-..+++.+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 35689999999999999998888754332 34568999999999999999999999999999988875532
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC--------cC---
Q 002307 500 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DT--- 568 (938)
Q Consensus 500 G~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~--------~~--- 568 (938)
...+-.++... ...+||||||||++.+.- +..+ .-.|+.| ..
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl~~~v-------------------EE~L---YpaMEDf~lDI~IG~gp~Ar 143 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-------------------EEVL---YPAMEDFRLDIIIGKGPAAR 143 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhcChhH-------------------HHHh---hhhhhheeEEEEEccCCccc
Confidence 22233344332 334699999999987542 2222 2223322 11
Q ss_pred -----CCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-CHHHHHhhCCCCCHHHH
Q 002307 569 -----GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARL 642 (938)
Q Consensus 569 -----~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-dL~~LA~~t~GfSgaDL 642 (938)
-..+.+|+||.+.-.|...|+. ||.....+..++.++...|+......+.+.-+. ...++|+++.| |++=.
T Consensus 144 sv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIA 220 (332)
T COG2255 144 SIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIA 220 (332)
T ss_pred eEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHH
Confidence 1347899999999999999998 999999999999999999999988777665333 36789999988 89999
Q ss_pred HHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCC
Q 002307 643 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 643 ~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~ 677 (938)
.+|+++....|.-++...|+.+-...|+.......
T Consensus 221 nRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~ 255 (332)
T COG2255 221 NRLLRRVRDFAQVKGDGDIDRDIADKALKMLDVDE 255 (332)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHhCccc
Confidence 99999999999989999999999999999886643
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=4.5e-16 Score=191.61 Aligned_cols=164 Identities=30% Similarity=0.416 Sum_probs=123.4
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH--------
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-------- 496 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-------- 496 (938)
+++.|++++++.+.+.+...... +...+..+||+||||||||++|+++|+.++.+|+.+++..+.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35889999999999876642211 1112347999999999999999999999999999998754322
Q ss_pred -HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC-----Cc---
Q 002307 497 -VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-----FD--- 567 (938)
Q Consensus 497 -~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg-----~~--- 567 (938)
.|.|....++...|..+....| ||||||||.+.+..++ + ..+.||..+|. +.
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~---------------~~~aLl~~ld~~~~~~f~d~~ 454 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D---------------PASALLEVLDPEQNNAFSDHY 454 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---C---------------HHHHHHHhcCHHhcCcccccc
Confidence 3566667778888888876666 8999999999854321 1 12233443331 11
Q ss_pred -----CCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHh
Q 002307 568 -----TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 616 (938)
Q Consensus 568 -----~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l 616 (938)
..+++++|+|||..+.++++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 455 ~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 455 LDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 12578999999999999999999 995 78999999999999998876
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.66 E-value=2e-15 Score=178.52 Aligned_cols=218 Identities=26% Similarity=0.342 Sum_probs=147.8
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCE
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPF 486 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pf 486 (938)
+...+.+|++++|++..++.++..+ . ...+.++||+||||||||++|++++..+ +.+|
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 4456688999999999988887542 1 1235689999999999999999998642 4689
Q ss_pred EEEeCch-------hHHHHhhhhhH----------------HHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchh
Q 002307 487 YQMAGSE-------FVEVLVGVGSA----------------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDH 543 (938)
Q Consensus 487 i~vs~se-------l~~~~vG~~~~----------------~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~ 543 (938)
+.++|.. +.+...+.... .....+.. ....+|||||||.+....
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~~~~---------- 191 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELHPVQ---------- 191 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCCHHH----------
Confidence 9999863 11111111000 00112222 234699999999976432
Q ss_pred hhhhhhHHHHHHHHHHHHHh----c-----CC--------------cCCCe-EEEEEecCCCCcCCccccCCCccceEEe
Q 002307 544 LYNAATQERETTLNQLLIEL----D-----GF--------------DTGKG-VIFLAATNRRDLLDPALLRPGRFDRKIR 599 (938)
Q Consensus 544 ~~~~~~~e~~~~LnqLL~eL----D-----g~--------------~~~~~-ViVIAATN~pd~LDpALlRpGRFdr~I~ 599 (938)
+..+..++..- + +. ..+.+ .+|++|||.++.+++++++ |+. .+.
T Consensus 192 ---------q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~ 259 (531)
T TIGR02902 192 ---------MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIF 259 (531)
T ss_pred ---------HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eee
Confidence 12222222220 0 00 01123 3455666779999999998 874 788
Q ss_pred ccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 600 IRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 600 V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
+++++.+++.+|++..+++..+.-+ ..++.++..+ ++++++.++++.|+..|..+++..|+.+|+.+++..-
T Consensus 260 f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 260 FRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 9999999999999999987664422 2245555544 3899999999999999988888899999999998754
No 56
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.65 E-value=2.3e-15 Score=183.54 Aligned_cols=223 Identities=21% Similarity=0.305 Sum_probs=161.2
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeCc
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGS 492 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~s 492 (938)
.++.++|.++....+.+++.. +...++||+||||||||++|+++|... ++.++.++..
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 467799999987777765543 124578999999999999999999864 4555666655
Q ss_pred hhH--HHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCC
Q 002307 493 EFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (938)
Q Consensus 493 el~--~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~ 570 (938)
.+. ..+.|..+.+++.+|..+....++||||||||.+.+.+.... ...+...++..++ .+.
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~----------g~~d~~nlLkp~L-------~~g 314 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG----------GQVDAANLIKPLL-------SSG 314 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC----------cHHHHHHHHHHHH-------hCC
Confidence 555 356788889999999999888899999999999986643211 1112222333333 246
Q ss_pred eEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHH-----Hhh-----CC
Q 002307 571 GVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY-----AKN-----LP 635 (938)
Q Consensus 571 ~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~L-----A~~-----t~ 635 (938)
.+.+|++||.++ ..|++|.| ||+ .|.|+.|+.+++..||+.+..+.....++++.+. +.. ..
T Consensus 315 ~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~ 391 (758)
T PRK11034 315 KIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIND 391 (758)
T ss_pred CeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccC
Confidence 799999999865 57999999 996 7999999999999999988776655555543322 222 23
Q ss_pred CCCHHHHHHHHHHHHHHHH----HhCCcccchhhHHHHHHhhccCC
Q 002307 636 GWTGARLAQLVQEAALVAV----RKGHESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 636 GfSgaDL~~Lv~eA~l~A~----r~~~~~It~edl~~Ai~rv~~g~ 677 (938)
.+-+.....++.+|+.... ......|+.+|+.+.+.+...-+
T Consensus 392 r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 392 RHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred ccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 4556788899999986542 22344688899999988876443
No 57
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.63 E-value=9.4e-15 Score=167.46 Aligned_cols=241 Identities=20% Similarity=0.242 Sum_probs=157.6
Q ss_pred CCcccCc-ccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeCch
Q 002307 420 TGVKFSD-VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSE 493 (938)
Q Consensus 420 ~~v~F~d-VvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~se 493 (938)
+..+|++ ++|.+.. .....+.....+|. ....+++||||||||||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n~-~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSNR-LAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcHH-HHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 5678999 5565432 12222222223321 234579999999999999999999977 57899999988
Q ss_pred hHHHHhhhhhH-HHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeE
Q 002307 494 FVEVLVGVGSA-RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (938)
Q Consensus 494 l~~~~vG~~~~-~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~V 572 (938)
+...+...... .+....... ..+++|+|||||.+.++.. ...+.-.+++.+. .....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~~~-------~~~~~ 234 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGKER-------------TQEEFFHTFNALH-------ENGKQ 234 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHH-------HCCCC
Confidence 87665433211 122222222 2357999999999864321 1112222333222 22334
Q ss_pred EEEEecCCCCc---CCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhCCCCCHHHHHHHH
Q 002307 573 IFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 573 iVIAATN~pd~---LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t~GfSgaDL~~Lv 646 (938)
+||++++.|.. +++.+.+ ||. ..+.+++|+.++|..|++..+...++.- +..+..+|....+ +.++|+.++
T Consensus 235 iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l 311 (405)
T TIGR00362 235 IVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGAL 311 (405)
T ss_pred EEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence 55655555553 5678887 886 4799999999999999999998765542 2336778888766 899999999
Q ss_pred HHHHHHHHHhCCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhh
Q 002307 647 QEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 705 (938)
Q Consensus 647 ~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~l 705 (938)
+.....|...+ ..|+.+.+.+++....... ++.+..+++-++|..++
T Consensus 312 ~~l~~~a~~~~-~~it~~~~~~~L~~~~~~~-----------~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 312 NRLLAYASLTG-KPITLELAKEALKDLLRAK-----------KKEITIENIQEVVAKYY 358 (405)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHhcccc-----------CCCCCHHHHHHHHHHHc
Confidence 99888776544 6699999999988764321 22366777777777554
No 58
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.62 E-value=1.1e-14 Score=169.34 Aligned_cols=220 Identities=23% Similarity=0.271 Sum_probs=148.9
Q ss_pred CCcccCccc-CcHH--HHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeC
Q 002307 420 TGVKFSDVA-GIDE--AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 491 (938)
Q Consensus 420 ~~v~F~dVv-G~de--ak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~ 491 (938)
+..+|++.+ |... +...+.++ ..+|. ...++++||||||||||+|++++++++ +..++++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~---~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAV---AENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHH---HhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 566899944 5432 33333333 22331 223579999999999999999999987 567899999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe
Q 002307 492 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (938)
Q Consensus 492 sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ 571 (938)
.+|...+...........|.... ..+++|+|||||.+.++.. ..++.-.+++.+.. ...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~l~~-------~~~ 245 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKER-------------TQEEFFHTFNALHE-------AGK 245 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHHH-------CCC
Confidence 98877665443222222233222 2577999999999864321 11222233333322 223
Q ss_pred EEEEEecCCCCc---CCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHH
Q 002307 572 VIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 572 ViVIAATN~pd~---LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~L 645 (938)
.+||+++..|.. +++.+.+ ||. ..+.+.+|+.++|.+|++..+...++. ++..++.+|....| +.++|+.+
T Consensus 246 ~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~ 322 (450)
T PRK00149 246 QIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGA 322 (450)
T ss_pred cEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHH
Confidence 456655555554 6788887 886 589999999999999999998865443 22237778888877 89999999
Q ss_pred HHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 646 VQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 646 v~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
++.....|...+ ..|+.+.+.+++....
T Consensus 323 l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 323 LNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 999887776554 5699999999998764
No 59
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.62 E-value=3.7e-14 Score=159.36 Aligned_cols=222 Identities=24% Similarity=0.280 Sum_probs=151.6
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC---------CCEEEEeCc
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGS 492 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg---------~pfi~vs~s 492 (938)
...+++.|.++.+++|...+..... ...+.+++|+||||||||++++++++++. +++++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3446899999999998887764221 13356799999999999999999988652 578888885
Q ss_pred hhHH----------HHh--hh-------h-hHHHHHHHHHHH-hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 493 EFVE----------VLV--GV-------G-SARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 493 el~~----------~~v--G~-------~-~~~vr~lF~~Ar-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
...+ .+. |. . ....+.++.... ...+.||+|||+|.+....
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------------ 145 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------------ 145 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------------
Confidence 4321 111 11 0 112334444433 3457899999999986221
Q ss_pred HHHHHHHHHHHhcC-CcCCCeEEEEEecCCCC---cCCccccCCCccc-eEEeccCCChhhHHHHHHHHhcccc----cC
Q 002307 552 RETTLNQLLIELDG-FDTGKGVIFLAATNRRD---LLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVK----MS 622 (938)
Q Consensus 552 ~~~~LnqLL~eLDg-~~~~~~ViVIAATN~pd---~LDpALlRpGRFd-r~I~V~lPd~eeR~eILr~~l~~~~----l~ 622 (938)
...+..++...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++.... +.
T Consensus 146 -~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~ 222 (365)
T TIGR02928 146 -DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD 222 (365)
T ss_pred -cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC
Confidence 1234455443211 12336788899999876 57778877 674 6799999999999999999886311 11
Q ss_pred Ccc-C-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 623 DSV-D-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 623 ~dv-d-L~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
++. + +..++..+.| ..+.+.++|+.|...|..++...|+.+|+..|++..
T Consensus 223 ~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 223 DGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred hhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 111 1 2334445556 577888899999999988888899999999999876
No 60
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.62 E-value=4.2e-15 Score=165.72 Aligned_cols=205 Identities=26% Similarity=0.428 Sum_probs=138.9
Q ss_pred CCcccCcccCcHHHHHH---HHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 420 TGVKFSDVAGIDEAVEE---LQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 420 ~~v~F~dVvG~deak~e---L~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
.+.+++|++|++....+ |.+.++ . ....+++||||||||||+||+.||+..+.+|..+|+-
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~---~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---- 82 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE---A---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---- 82 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh---c---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc----
Confidence 45689999999998644 333332 2 2234799999999999999999999999999999873
Q ss_pred HHhhhhhHHHHHHHHHHHhCC----CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeE
Q 002307 497 VLVGVGSARIRDLFKRAKVNK----PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~~----P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~V 572 (938)
-.+.+.+|.+++.|+... .-|||||||+.+....| ..||-.+ .+..|
T Consensus 83 ---~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ----------------------D~lLp~v----E~G~i 133 (436)
T COG2256 83 ---TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ----------------------DALLPHV----ENGTI 133 (436)
T ss_pred ---cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh----------------------hhhhhhh----cCCeE
Confidence 345567999999995543 36999999999865432 2344444 34667
Q ss_pred EEEEecC-CC-CcCCccccCCCccceEEeccCCChhhHHHHHHHHhcc--cccC------CccCHHHHHhhCCCCCHHHH
Q 002307 573 IFLAATN-RR-DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK--VKMS------DSVDLSSYAKNLPGWTGARL 642 (938)
Q Consensus 573 iVIAATN-~p-d~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~--~~l~------~dvdL~~LA~~t~GfSgaDL 642 (938)
++|+||. .| -.+.+||++ | .+++.+.+.+.++...+++.-+.. .++. ++..++.++..+.| .++-.
T Consensus 134 ilIGATTENPsF~ln~ALlS--R-~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~a 209 (436)
T COG2256 134 ILIGATTENPSFELNPALLS--R-ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRA 209 (436)
T ss_pred EEEeccCCCCCeeecHHHhh--h-hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHH
Confidence 7777663 34 489999998 6 458889999999999999884433 2232 12225567777766 34444
Q ss_pred HHHHHHHHHHHHHhCCcccchhhHHHHHHhhcc
Q 002307 643 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 643 ~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
-|++..+...+ +.+ ..++.+++.+.+.+...
T Consensus 210 LN~LE~~~~~~-~~~-~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 210 LNLLELAALSA-EPD-EVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHHHhc-CCC-cccCHHHHHHHHhhhhh
Confidence 44444444433 222 23447777777766543
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.4e-14 Score=166.99 Aligned_cols=204 Identities=23% Similarity=0.296 Sum_probs=143.1
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC---------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--------------- 484 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~--------------- 484 (938)
.+.+|+||+|++.+++.|...+.. .+.|+++||+||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 456899999999998888776542 135667999999999999999999998765
Q ss_pred ---------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 485 ---------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 485 ---------pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+...
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~------------------- 132 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE------------------- 132 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------------
Confidence 244444421 1223345665555432 23469999999987421
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~L 630 (938)
.++.|+..++. .+..+++|++|+.+..+++++++ |+ ..+.+.+++.++...+++..+...++. .+..+..+
T Consensus 133 ---a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~I 204 (472)
T PRK14962 133 ---AFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFI 204 (472)
T ss_pred ---HHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 24556666653 33567777777778899999998 76 489999999999999999888654433 22236778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHh
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~r 672 (938)
+..+.| +.+++.+++..+...+ + ..|+.+++.+++..
T Consensus 205 a~~s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 205 AKRASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALGL 241 (472)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcC
Confidence 887766 6777777776654332 2 34999999888754
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.1e-14 Score=166.11 Aligned_cols=202 Identities=21% Similarity=0.284 Sum_probs=147.9
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|...+.. .+.++.+||+||||||||++|+++|+.+++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 456899999999999988777642 2345679999999999999999999988763
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.+++. ...+...+|++.+.+. .....|+||||+|.+..
T Consensus 82 ~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-------------------- 135 (484)
T PRK14956 82 LEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-------------------- 135 (484)
T ss_pred HHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH--------------------
Confidence 2222211 1122345666655543 23456999999999742
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~L 630 (938)
...|.||..++ .....+++|.+|+.++.+.+++++ |+ ..+.+..++.++-.+.++..+...++. .+..+..+
T Consensus 136 --~A~NALLKtLE--EPp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~I 208 (484)
T PRK14956 136 --QSFNALLKTLE--EPPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWI 208 (484)
T ss_pred --HHHHHHHHHhh--cCCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 24677787776 355788888899999999999998 86 478898999988888898888765543 23347778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++.+.| +.++.-+++.++...+ ...|+.+++.+.+
T Consensus 209 a~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 209 AKKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 888888 7999999998876432 2358888776665
No 63
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.4e-15 Score=171.72 Aligned_cols=178 Identities=28% Similarity=0.409 Sum_probs=136.6
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH--------
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-------- 496 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-------- 496 (938)
.|-.|++++|+++.|++.-.+.... ..+.-++|+||||+|||+|++.||+.++.+|+.++.....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 5678999999999988765322111 11235889999999999999999999999999998644332
Q ss_pred -HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEE
Q 002307 497 -VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (938)
Q Consensus 497 -~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVI 575 (938)
.|+|....++-+.+..|...+| +++|||||.++.+-++ ++...+..-.+++.+..+..-.-+++ -.-+.|++|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rG---DPaSALLEVLDPEQN~~F~DhYLev~--yDLS~VmFi 470 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRG---DPASALLEVLDPEQNNTFSDHYLEVP--YDLSKVMFI 470 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCC---ChHHHHHhhcCHhhcCchhhccccCc--cchhheEEE
Confidence 3889989999999999999999 8889999999876433 34444444445554444443333322 223679999
Q ss_pred EecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhc
Q 002307 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (938)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~ 617 (938)
||+|..+.++.+|+. |+. +|.+.-+..++..+|-+.|+=
T Consensus 471 aTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 471 ATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 999999999999998 885 899999999999999998873
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.1e-14 Score=158.33 Aligned_cols=209 Identities=20% Similarity=0.257 Sum_probs=144.1
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE--------eC
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM--------AG 491 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v--------s~ 491 (938)
.+.+|+||+|++.+++.|.+.+.. .+.++.+||+||||||||++|+++|+.+.+..... +|
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 356899999999999998877642 23566789999999999999999999886421100 01
Q ss_pred chhHHH----------HhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 492 SEFVEV----------LVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 492 sel~~~----------~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
.++... ........++.+...+.. ....|++|||+|.+.. ...+
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~----------------------~a~n 137 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR----------------------HSFN 137 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH----------------------HHHH
Confidence 111000 001223345666655432 2235999999998742 2345
Q ss_pred HHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCC
Q 002307 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPG 636 (938)
Q Consensus 558 qLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~G 636 (938)
.||..++. .+..+.+|.+|+.++.+.+++.+ |+ ..+++++|+.++..++++..++..+.. ++..+..++..+.|
T Consensus 138 aLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 138 ALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred HHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 56766663 34566667777778889989887 76 588999999999999999988775533 22346667877766
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 637 WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 637 fSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
+.+++.+++..+... +...|+.+++.+++.
T Consensus 213 -~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 213 -SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred -CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 888888888877643 456788888877763
No 65
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=6e-15 Score=172.30 Aligned_cols=197 Identities=25% Similarity=0.398 Sum_probs=144.7
Q ss_pred ccccccccccccccccccccCCCCcccCcccCcHHHHHHHHHHHHH--hcCchhhhccCCCCCceEEEEcCCCchHHHHH
Q 002307 398 KWDLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRY--LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVA 475 (938)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~--Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LA 475 (938)
+|+.....++.-.+++.+.+ +|--|++++|+++.|++.- |+.. ..++-++|+||||+|||+++
T Consensus 391 PWgk~S~En~dl~~Ak~iLd-------eDHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~ 455 (906)
T KOG2004|consen 391 PWGKSSTENLDLARAKEILD-------EDHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIA 455 (906)
T ss_pred CCCCCChhhhhHHHHHHhhc-------ccccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHH
Confidence 46666666666666665544 6678999999999998764 4432 34556899999999999999
Q ss_pred HHHHHhcCCCEEEEeCchhHH---------HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhh
Q 002307 476 KAIAGEAGVPFYQMAGSEFVE---------VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYN 546 (938)
Q Consensus 476 rALA~elg~pfi~vs~sel~~---------~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~ 546 (938)
|+||+.++..|+.++...+.+ .|+|....++-+.++....++| +++|||||.++...+ +++...+..
T Consensus 456 kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q---GDPasALLE 531 (906)
T KOG2004|consen 456 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ---GDPASALLE 531 (906)
T ss_pred HHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC---CChHHHHHH
Confidence 999999999999998654433 3889888999999999988888 888999999984322 233322333
Q ss_pred hhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcc
Q 002307 547 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 618 (938)
Q Consensus 547 ~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~ 618 (938)
-.++|.+..++.-. ||---.-+.|++|||+|..+.|+++|+. |+. .|+++-+..++...|-+.|+-.
T Consensus 532 lLDPEQNanFlDHY--LdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 532 LLDPEQNANFLDHY--LDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred hcChhhccchhhhc--cccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 33333222221110 1111123679999999999999999998 885 8899999999999999988743
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.5e-14 Score=169.25 Aligned_cols=200 Identities=19% Similarity=0.286 Sum_probs=146.0
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
...+|+||+|++.+++.|.+.+.. .+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 456899999999999999888753 2346678999999999999999999988761
Q ss_pred ---------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhh
Q 002307 486 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 546 (938)
Q Consensus 486 ---------------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~ 546 (938)
++.++.. ...+...+|++.+.+.. ....|+||||+|.|..
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAa------s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------- 138 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAA------SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------- 138 (700)
T ss_pred ccHHHHHHHcCCCCcceEeccc------ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------
Confidence 1111111 11234557777766542 2346999999999742
Q ss_pred hhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-
Q 002307 547 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV- 625 (938)
Q Consensus 547 ~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv- 625 (938)
...|.||..|+ +...++++|.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+.+.++..+.
T Consensus 139 -------~AaNALLKTLE--EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e 206 (700)
T PRK12323 139 -------HAFNAMLKTLE--EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN 206 (700)
T ss_pred -------HHHHHHHHhhc--cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH
Confidence 24677888887 355678888899999999999998 75 688999999999999998888765544332
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHH
Q 002307 626 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (938)
Q Consensus 626 dL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~ 668 (938)
.+..+++.+.| +.++..+++.++... +...|+.+++..
T Consensus 207 AL~~IA~~A~G-s~RdALsLLdQaia~----~~~~It~~~V~~ 244 (700)
T PRK12323 207 ALRLLAQAAQG-SMRDALSLTDQAIAY----SAGNVSEEAVRG 244 (700)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 25677888877 899999998877643 223465554443
No 67
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.57 E-value=2.2e-13 Score=154.76 Aligned_cols=224 Identities=21% Similarity=0.248 Sum_probs=151.0
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeCchhH
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFV 495 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sel~ 495 (938)
....+.+.|.++..++|...+..... ...+.+++|+||||||||++++.+++++ +..+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34557799999998888887754211 1234579999999999999999999876 5788999886432
Q ss_pred ----------HHHhhh-------hhH-HHHHHHHHHH-hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHH
Q 002307 496 ----------EVLVGV-------GSA-RIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 556 (938)
Q Consensus 496 ----------~~~vG~-------~~~-~vr~lF~~Ar-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~L 556 (938)
..+.+. ... .+..+..... ...+.||+|||+|.+..... ...+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~------------------~~~l 159 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG------------------NDVL 159 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC------------------chHH
Confidence 111120 111 1222222222 23568999999999872110 1235
Q ss_pred HHHHHHhcCCcCCCeEEEEEecCCCC---cCCccccCCCccc-eEEeccCCChhhHHHHHHHHhcccc---cCCccCHHH
Q 002307 557 NQLLIELDGFDTGKGVIFLAATNRRD---LLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVK---MSDSVDLSS 629 (938)
Q Consensus 557 nqLL~eLDg~~~~~~ViVIAATN~pd---~LDpALlRpGRFd-r~I~V~lPd~eeR~eILr~~l~~~~---l~~dvdL~~ 629 (938)
..++..++... ..++.+|+++|..+ .+++.+.+ ||. ..|.+++++.++..+|++.++.... .-.+..+..
T Consensus 160 ~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 236 (394)
T PRK00411 160 YSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDL 236 (394)
T ss_pred HHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHH
Confidence 55555554332 24788888888754 56777665 553 5789999999999999998885421 112222455
Q ss_pred HHhhCCC--CCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 630 YAKNLPG--WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 630 LA~~t~G--fSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
+++.+.+ ...+.+.++|+.|...|..++...|+.+|+..|++++
T Consensus 237 i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 237 IADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 6665532 1456677889999999988888999999999999987
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=99.57 E-value=4.8e-14 Score=165.27 Aligned_cols=208 Identities=22% Similarity=0.268 Sum_probs=144.2
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
.-.+.+|+||+|.+++++.|.+.+....+ ..+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~ 78 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA 78 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH
Confidence 33566899999999999999988865432 1346789999999999999999999999999999998765321
Q ss_pred HhhhhhHHHHHHHHHHHh------CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe
Q 002307 498 LVGVGSARIRDLFKRAKV------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (938)
Q Consensus 498 ~vG~~~~~vr~lF~~Ar~------~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ 571 (938)
..++.+...+.. ..+.||+|||+|.+....+ ...++.++..++ ..+
T Consensus 79 ------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d------------------~~~~~aL~~~l~----~~~ 130 (482)
T PRK04195 79 ------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED------------------RGGARAILELIK----KAK 130 (482)
T ss_pred ------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc------------------hhHHHHHHHHHH----cCC
Confidence 122333222221 2467999999999864211 112334444443 123
Q ss_pred EEEEEecCCCCcCCc-cccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHH
Q 002307 572 VIFLAATNRRDLLDP-ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEA 649 (938)
Q Consensus 572 ViVIAATN~pd~LDp-ALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA 649 (938)
..+|+++|.+..+++ .+++ ....|.|+.|+.++...+++..+...++. ++..+..++..+.| |++.+++..
T Consensus 131 ~~iIli~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred CCEEEeccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 345567888887776 5544 45789999999999999999988765543 22337778877655 777777766
Q ss_pred HHHHHHhCCcccchhhHHHHH
Q 002307 650 ALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 650 ~l~A~r~~~~~It~edl~~Ai 670 (938)
...+ .+...|+.+++....
T Consensus 204 q~~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 204 QAIA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHh--cCCCCCcHHHHHHhh
Confidence 6543 355678888776554
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.57 E-value=1.1e-13 Score=159.23 Aligned_cols=200 Identities=24% Similarity=0.413 Sum_probs=142.3
Q ss_pred CcccCcccCcHHHHHH---HHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 421 GVKFSDVAGIDEAVEE---LQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 421 ~v~F~dVvG~deak~e---L~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
+.+|+|++|+++.... |.+++.. ..+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 4579999999998766 6655531 123479999999999999999999999999999987632
Q ss_pred HhhhhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 498 LVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 498 ~vG~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+...++.+++.+. .....||||||+|.+... ..+.|+..++ ...++
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~----------------------~q~~LL~~le----~~~ii 122 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA----------------------QQDALLPHVE----DGTIT 122 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH----------------------HHHHHHHHhh----cCcEE
Confidence 2334566666653 235679999999987432 1233444443 24466
Q ss_pred EEEecC--CCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccc--c-C-CccCHHHHHhhCCCCCHHHHHHHHH
Q 002307 574 FLAATN--RRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK--M-S-DSVDLSSYAKNLPGWTGARLAQLVQ 647 (938)
Q Consensus 574 VIAATN--~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~--l-~-~dvdL~~LA~~t~GfSgaDL~~Lv~ 647 (938)
+|++|+ ....+++++++ |+ ..+.+++++.++...+++..+.... + . .+..+..+++.+.| +.+.+.+++.
T Consensus 123 lI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le 198 (413)
T PRK13342 123 LIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLE 198 (413)
T ss_pred EEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 666553 34578999998 87 6889999999999999998775421 1 1 12225667777755 7778888877
Q ss_pred HHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 648 EAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 648 eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
.+... ...|+.+++.+++....
T Consensus 199 ~~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 199 LAALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHc-----cCCCCHHHHHHHHhhhh
Confidence 76643 45799999999987654
No 70
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=7.8e-14 Score=166.93 Aligned_cols=199 Identities=19% Similarity=0.286 Sum_probs=144.5
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
...+|+||+|++.+++.|.+.+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 456899999999999998887642 2456678999999999999999999988652
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.++.. ...+...++.+++.+.. ....|+||||+|.|..
T Consensus 80 r~I~~G~h~DviEIDAa------s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------------- 133 (830)
T PRK07003 80 REIDEGRFVDYVEMDAA------SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------------- 133 (830)
T ss_pred HHHhcCCCceEEEeccc------ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------------------
Confidence 2222211 11233456777776542 2346999999999742
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~L 630 (938)
...|.||..|+ +...+++||.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+.+.++. ++..+..|
T Consensus 134 --~A~NALLKtLE--EPP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lI 206 (830)
T PRK07003 134 --HAFNAMLKTLE--EPPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLL 206 (830)
T ss_pred --HHHHHHHHHHH--hcCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23566777776 345678888899999999999998 76 688999999999999999888765544 23336778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 667 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~ 667 (938)
++.+.| +.++..+++.++.... ...|+.+++.
T Consensus 207 A~~A~G-smRdALsLLdQAia~~----~~~It~~~V~ 238 (830)
T PRK07003 207 ARAAQG-SMRDALSLTDQAIAYS----ANEVTETAVS 238 (830)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHH
Confidence 888888 7889999988877443 2345554443
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1.1e-13 Score=162.46 Aligned_cols=213 Identities=19% Similarity=0.274 Sum_probs=152.2
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE-----------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ----------- 488 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~----------- 488 (938)
.+-+|+|++|++.+++.|...+.. .+.++++||+||||||||++|+++|+.+++.-..
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 566899999999999988776532 2456789999999999999999999988653110
Q ss_pred -EeCchhHHH----------HhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHH
Q 002307 489 -MAGSEFVEV----------LVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 553 (938)
Q Consensus 489 -vs~sel~~~----------~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~ 553 (938)
.+|..+.+. ....+...++.+++.+... ...|++|||+|.+..
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------------- 142 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------------- 142 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH----------------------
Confidence 011111110 0112445678888777532 345999999998742
Q ss_pred HHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHHh
Q 002307 554 TTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAK 632 (938)
Q Consensus 554 ~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~ 632 (938)
..++.|+..++ ..+..+++|.+|+.++.+++++++ |+ ..+.+..++.++...+++..+++.+...+ ..+..++.
T Consensus 143 ~a~naLLk~LE--epp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 143 GAFNALLKTLE--EPPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HHHHHHHHHHh--hcCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 23566777666 345667777778888899999987 76 57889999999999999999987654432 33677888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHh
Q 002307 633 NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 633 ~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~r 672 (938)
.+.| +.+++.++++.+...+.. ....|+.+++.+.+..
T Consensus 218 ~s~G-slR~al~~Ldkai~~~~~-~~~~It~~~V~~llg~ 255 (507)
T PRK06645 218 KSEG-SARDAVSILDQAASMSAK-SDNIISPQVINQMLGL 255 (507)
T ss_pred HcCC-CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHCC
Confidence 8877 899999999998766532 1236888887766543
No 72
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=7.1e-14 Score=162.06 Aligned_cols=222 Identities=17% Similarity=0.224 Sum_probs=147.1
Q ss_pred CCCcccCccc-CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeCc
Q 002307 419 STGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGS 492 (938)
Q Consensus 419 ~~~v~F~dVv-G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~s 492 (938)
.+..+|++.+ |-... ...........+|.. ..+++||||||||||+|++++++++ +..++++++.
T Consensus 99 ~~~~tFdnFv~g~~n~-~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 99 NPDYTFENFVVGPGNS-FAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCcccccccCCchH-HHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 4677899976 64332 222222223333321 3469999999999999999999975 4678999999
Q ss_pred hhHHHHhhhhh-HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe
Q 002307 493 EFVEVLVGVGS-ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (938)
Q Consensus 493 el~~~~vG~~~-~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ 571 (938)
+|...+..... ..+. -|.......+++|+|||++.+.++.. ...+...+++.+. ....
T Consensus 170 ~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~~~-------------~q~elf~~~n~l~-------~~~k 228 (440)
T PRK14088 170 KFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGKTG-------------VQTELFHTFNELH-------DSGK 228 (440)
T ss_pred HHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCcHH-------------HHHHHHHHHHHHH-------HcCC
Confidence 88776544321 1222 23333334678999999998754321 1122233333332 2233
Q ss_pred EEEEEecCCCCc---CCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhCCCCCHHHHHHH
Q 002307 572 VIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 572 ViVIAATN~pd~---LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t~GfSgaDL~~L 645 (938)
.+|+++.+.|.. +++.+.+ ||. ..+.+.+||.+.|.+|++..+...++.- +..+..+|....| +.++|+.+
T Consensus 229 ~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~ 305 (440)
T PRK14088 229 QIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGA 305 (440)
T ss_pred eEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHH
Confidence 566655566654 5567777 764 5778999999999999999987544432 2236778888777 89999999
Q ss_pred HHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 646 VQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 646 v~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
++.....+...+ ..|+.+.+.+++....
T Consensus 306 l~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 306 IIKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 998877775544 6799999999998764
No 73
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.56 E-value=1.2e-13 Score=144.69 Aligned_cols=205 Identities=16% Similarity=0.221 Sum_probs=135.2
Q ss_pred CCcccCccc--CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchh
Q 002307 420 TGVKFSDVA--GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 494 (938)
Q Consensus 420 ~~v~F~dVv--G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel 494 (938)
...+|++.+ +.+.+.+.+++++. ...+.+++|+||+|||||++|+++++++ +.++++++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 345677776 34556666666542 1345689999999999999999999876 578999999887
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
.... ...+.... .+.+|+|||+|.+.... .....+..++..+. .....+|
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----------------~~~~~L~~~l~~~~---~~~~~iI 127 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----------------EWQEALFHLYNRVR---EAGGRLL 127 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----------------HHHHHHHHHHHHHH---HcCCeEE
Confidence 6432 22333222 34599999999875321 11223333443332 1223444
Q ss_pred EEecCCCCcCC---ccccCCCcc--ceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHH
Q 002307 575 LAATNRRDLLD---PALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 575 IAATN~pd~LD---pALlRpGRF--dr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~e 648 (938)
+.++..+..++ +.+.+ |+ ...+.+++|+.+++..+++.++.+..+. .+..+..+++.++| +.+++.+++++
T Consensus 128 its~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~ 204 (226)
T TIGR03420 128 IAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDA 204 (226)
T ss_pred EECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 44443444332 56666 65 4789999999999999999887654443 22236777887655 89999999999
Q ss_pred HHHHHHHhCCcccchhhHHHHH
Q 002307 649 AALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 649 A~l~A~r~~~~~It~edl~~Ai 670 (938)
+...+..++ ..|+.+.+.+.+
T Consensus 205 ~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 205 LDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHhC-CCCCHHHHHHHh
Confidence 887665544 578888777664
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1e-13 Score=164.49 Aligned_cols=202 Identities=20% Similarity=0.288 Sum_probs=146.3
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|...+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 356899999999999999887652 2456789999999999999999999988652
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.+++++ ..+...+|.+...+.. ....|+||||+|.|..
T Consensus 79 ~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-------------------- 132 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-------------------- 132 (702)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------------
Confidence 23333221 1133456666665532 2446999999998742
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~L 630 (938)
...+.|+..++. ....+.+|.+|+.+..+.+.+++ |+ ..+.+.+++.++..+.++..+.+.++..+ ..+..+
T Consensus 133 --~A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~I 205 (702)
T PRK14960 133 --HSFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQI 205 (702)
T ss_pred --HHHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 235566766663 34567777778888888888886 75 58899999999999999988877654432 336778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++.+.| +.+++.+++..+... +...|+.+++...+
T Consensus 206 A~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 206 AESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 888876 889999998877643 34568888876654
No 75
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=7.4e-14 Score=173.09 Aligned_cols=216 Identities=19% Similarity=0.268 Sum_probs=149.5
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeC
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 491 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~ 491 (938)
-++++++|.++...++.++ +... ...+++|+||||||||++|+.+|... +..++.++.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~---l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDI---LLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCCcccCCHHHHHHHHHH---HhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 3678999999975544443 3222 23478999999999999999999976 245777777
Q ss_pred chhHH--HHhhhhhHHHHHHHHHHHh-CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC
Q 002307 492 SEFVE--VLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 568 (938)
Q Consensus 492 sel~~--~~vG~~~~~vr~lF~~Ar~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~ 568 (938)
+.+.. .+.|..+.+++.+|..++. ..++||||||||.+.+.++.. +. . ..-|-|+-.+ .
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~---------~---d~~n~Lkp~l----~ 313 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQ---------G---DAANLLKPAL----A 313 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cc---------c---cHHHHhhHHh----h
Confidence 76653 5778888999999999865 468899999999998654321 10 0 0112232222 3
Q ss_pred CCeEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-----CccCHHHHHhhCCCCC
Q 002307 569 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----DSVDLSSYAKNLPGWT 638 (938)
Q Consensus 569 ~~~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-----~dvdL~~LA~~t~GfS 638 (938)
+..+.+|+||+..+ .+|+||.| ||. .|.|+.|+.+++..||+.+....... .+..+..++..+.+|-
T Consensus 314 ~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 314 RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 46789999998753 48999999 995 89999999999999987766543321 2233666677766553
Q ss_pred -----HHHHHHHHHHHHHHHHHh-CCcccchhhHHHHH
Q 002307 639 -----GARLAQLVQEAALVAVRK-GHESILSSDMDDAV 670 (938)
Q Consensus 639 -----gaDL~~Lv~eA~l~A~r~-~~~~It~edl~~Ai 670 (938)
+...-.|+.+|+.....+ ....+..+++.+.+
T Consensus 391 ~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 391 PGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred ccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 456677888887665433 33444555555444
No 76
>PRK06893 DNA replication initiation factor; Validated
Probab=99.55 E-value=2.1e-13 Score=145.07 Aligned_cols=212 Identities=12% Similarity=0.121 Sum_probs=133.7
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchh
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 494 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel 494 (938)
-.+..+|++.+|.+... .+..+..... . .....++||||||||||+|++|+|+++ +....+++....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~~------~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNFI------D---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHhh------c---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 34677899988665431 1111111111 1 112358999999999999999999986 445555555422
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
.. .....+... .+..+|+|||++.+.++. ..+..+..++..+. ..+..++|
T Consensus 79 ~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~~-----------------~~~~~l~~l~n~~~--~~~~~ill 129 (229)
T PRK06893 79 QY--------FSPAVLENL--EQQDLVCLDDLQAVIGNE-----------------EWELAIFDLFNRIK--EQGKTLLL 129 (229)
T ss_pred hh--------hhHHHHhhc--ccCCEEEEeChhhhcCCh-----------------HHHHHHHHHHHHHH--HcCCcEEE
Confidence 11 111223332 245699999999975331 12233444444332 12334556
Q ss_pred EEecCCCCcCC---ccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-CHHHHHhhCCCCCHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLD---PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQEAA 650 (938)
Q Consensus 575 IAATN~pd~LD---pALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-dL~~LA~~t~GfSgaDL~~Lv~eA~ 650 (938)
++++..|..++ +.|.+..+++..+.++.|+.++|.+|++..+....+.-+. -+.-+++...| +.+.+.++++...
T Consensus 130 its~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 130 ISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred EeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 66666676554 7888844556789999999999999999888755544332 36678888877 8899999988765
Q ss_pred HHHHHhCCcccchhhHHHHH
Q 002307 651 LVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 651 l~A~r~~~~~It~edl~~Ai 670 (938)
..+.. ....||...+.+++
T Consensus 209 ~~~~~-~~~~it~~~v~~~L 227 (229)
T PRK06893 209 KASLQ-AQRKLTIPFVKEIL 227 (229)
T ss_pred HHHHh-cCCCCCHHHHHHHh
Confidence 44443 33468888887765
No 77
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9.6e-14 Score=163.40 Aligned_cols=202 Identities=19% Similarity=0.257 Sum_probs=146.1
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|.+.+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 456899999999999999887753 2456678999999999999999999988653
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.++++ ...+...+|.+.+.+.. ....|++|||+|.+...
T Consensus 80 ~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~------------------- 134 (509)
T PRK14958 80 REIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH------------------- 134 (509)
T ss_pred HHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------------
Confidence 3333322 12234456777665532 23459999999997532
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~L 630 (938)
..|.||..|+. .+..+++|.+|+.+..+.+.+++ |+ ..+++..++.++....++..+.+.+..- +..+..+
T Consensus 135 ---a~naLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~i 206 (509)
T PRK14958 135 ---SFNALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLL 206 (509)
T ss_pred ---HHHHHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35667777763 44567777777888888888887 65 5778888889888888888887655442 2336677
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++.+.| +.+++.+++..+... +...|+.+++...+
T Consensus 207 a~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 207 ARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 888766 899999999887543 34568887777654
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.5e-13 Score=164.64 Aligned_cols=202 Identities=20% Similarity=0.305 Sum_probs=146.6
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|.+.+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 346899999999999988877653 2345678999999999999999999988663
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.+++.. ..+...+|++.+.+.. ....|+||||+|.+..
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------------- 133 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------------- 133 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH--------------------
Confidence 12222211 1123446666665432 2345999999999742
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~L 630 (938)
...|.||..|+ +....+++|.+|+.+..|.+.+++ | +..++|..++.++-...|+..+...++.. +..+..+
T Consensus 134 --~a~NALLKtLE--EPp~~v~FIL~Tt~~~kLl~TI~S--R-C~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~I 206 (647)
T PRK07994 134 --HSFNALLKTLE--EPPEHVKFLLATTDPQKLPVTILS--R-CLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLL 206 (647)
T ss_pred --HHHHHHHHHHH--cCCCCeEEEEecCCccccchHHHh--h-heEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34677888777 455677778788889999999998 8 58999999999999999998886654432 2336678
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++.+.| +.++..+++.++... +...|+.+++...+
T Consensus 207 a~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 207 ARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888877 899999998877643 33456766666554
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.8e-13 Score=164.89 Aligned_cols=193 Identities=20% Similarity=0.251 Sum_probs=136.9
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCE-------EEE-eC
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------YQM-AG 491 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pf-------i~v-s~ 491 (938)
.+.+|++|+|++.+++.|++.+.. .+.++.+||+||||||||++|+++|+.+++.- ..+ +|
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 356899999999999998877642 13466789999999999999999999987641 111 01
Q ss_pred chhHHH-------Hh---hhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 492 SEFVEV-------LV---GVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 492 sel~~~-------~v---G~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
-.+... +- ..+...+|.+...+.. ....|+||||+|.|.. ...|
T Consensus 80 ~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~----------------------eAqN 137 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR----------------------SSFN 137 (944)
T ss_pred HHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH----------------------HHHH
Confidence 111100 00 1123346666655432 2345999999999742 3467
Q ss_pred HHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhCCC
Q 002307 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPG 636 (938)
Q Consensus 558 qLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t~G 636 (938)
.||..|+ .....+++|.+|+.+..|.+.+++ |+ ..+.|..++.++....|++.+...++.- +..+..+++.+.|
T Consensus 138 ALLKtLE--EPP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 138 ALLKTLE--EPPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred HHHHHHh--ccCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7788877 345667777778888889889888 75 6899999999999999998887644332 2236778888877
Q ss_pred CCHHHHHHHHHHHHH
Q 002307 637 WTGARLAQLVQEAAL 651 (938)
Q Consensus 637 fSgaDL~~Lv~eA~l 651 (938)
+.+++.+++.++..
T Consensus 213 -d~R~ALnLLdQala 226 (944)
T PRK14949 213 -SMRDALSLTDQAIA 226 (944)
T ss_pred -CHHHHHHHHHHHHH
Confidence 89999999988773
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.8e-13 Score=163.65 Aligned_cols=209 Identities=22% Similarity=0.303 Sum_probs=147.5
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE--EeCc-----
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ--MAGS----- 492 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~--vs~s----- 492 (938)
.+.+|+||+|++.+++.|.+.+.. .+.++++||+||+|||||++|+++|+.++++-.. ..|.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 456899999999999999887652 2456789999999999999999999987653110 0011
Q ss_pred -hhHH----------HHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 493 -EFVE----------VLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 493 -el~~----------~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
.+.. .....+...+++++..+.. ....|+||||+|.+.. ...+
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~----------------------~A~N 137 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK----------------------SAFN 137 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH----------------------HHHH
Confidence 0000 0012234467777776532 2346999999998632 2356
Q ss_pred HHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCC
Q 002307 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPG 636 (938)
Q Consensus 558 qLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~G 636 (938)
.||..|+. ....+.+|.+||.+..+.+.+++ |+ ..+.|..++.++....|+..+.+.++.-+ ..+..|++.+.|
T Consensus 138 ALLKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G 212 (709)
T PRK08691 138 AMLKTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG 212 (709)
T ss_pred HHHHHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 77777763 34567777788888888888886 75 57788899999999999998887655422 236778888866
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 637 WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 637 fSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
+.+++.+++..+... +...|+.+++...+.
T Consensus 213 -slRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 213 -SMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 899999999887754 334677777666543
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.52 E-value=5e-13 Score=141.12 Aligned_cols=202 Identities=13% Similarity=0.155 Sum_probs=133.9
Q ss_pred CCCcccCccc--CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch
Q 002307 419 STGVKFSDVA--GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (938)
Q Consensus 419 ~~~v~F~dVv--G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se 493 (938)
....+|++.+ +.+.+...++++.. +...+.+++|+||+|||||+||+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 3457788866 33555555555433 22345689999999999999999999875 77889999877
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe-E
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG-V 572 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~-V 572 (938)
+.... . ....+.+|+|||+|.+... ....+..++..+ ..... +
T Consensus 81 ~~~~~------------~--~~~~~~~liiDdi~~l~~~-------------------~~~~L~~~~~~~---~~~~~~~ 124 (227)
T PRK08903 81 PLLAF------------D--FDPEAELYAVDDVERLDDA-------------------QQIALFNLFNRV---RAHGQGA 124 (227)
T ss_pred hHHHH------------h--hcccCCEEEEeChhhcCch-------------------HHHHHHHHHHHH---HHcCCcE
Confidence 54321 1 1224569999999986422 122233333333 22333 3
Q ss_pred EEEEecCCCC--cCCccccCCCcc--ceEEeccCCChhhHHHHHHHHhcccccCCcc-CHHHHHhhCCCCCHHHHHHHHH
Q 002307 573 IFLAATNRRD--LLDPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQ 647 (938)
Q Consensus 573 iVIAATN~pd--~LDpALlRpGRF--dr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-dL~~LA~~t~GfSgaDL~~Lv~ 647 (938)
++++++..+. .+.+.+.+ || ...+.+++|+.+++..+++..+....+.-+. -+..+++.++| +.+++.++++
T Consensus 125 vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~ 201 (227)
T PRK08903 125 LLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLD 201 (227)
T ss_pred EEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 4444333332 34566665 66 5789999999999999998877655443222 36778887777 8999999999
Q ss_pred HHHHHHHHhCCcccchhhHHHHHH
Q 002307 648 EAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 648 eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
.....|.. .+..|+...+.+++.
T Consensus 202 ~l~~~~~~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 202 ALDRYSLE-QKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHH-hCCCCCHHHHHHHHh
Confidence 86655544 447899888888764
No 82
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=5.6e-13 Score=156.74 Aligned_cols=202 Identities=21% Similarity=0.317 Sum_probs=144.2
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|...+.. .+.++.+||+||||||||++|+++|+.+.+.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 456899999999999999888763 2345678999999999999999999988541
Q ss_pred ---------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHH
Q 002307 486 ---------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 552 (938)
Q Consensus 486 ---------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~ 552 (938)
++.++++. ..+...+|++...+.. ..+.||+|||+|.+..
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~--------------------- 130 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK--------------------- 130 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH---------------------
Confidence 33333321 1223446665554432 3456999999987531
Q ss_pred HHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHH
Q 002307 553 ETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYA 631 (938)
Q Consensus 553 ~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA 631 (938)
..++.|+..++. ....+++|.+||.+..+.+.+.+ |+ ..+.+..|+.++....++..+.+.++..+ ..+..++
T Consensus 131 -~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia 204 (504)
T PRK14963 131 -SAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA 204 (504)
T ss_pred -HHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 235677777763 33566777778888999999987 65 47899999999999999998877655422 2367778
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 632 KNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 632 ~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
..+.| +.+++.++++.+... ...|+.+++...+.
T Consensus 205 ~~s~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 205 RLADG-AMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred HHcCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 87766 778888888776432 24688887776643
No 83
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=3.3e-13 Score=160.00 Aligned_cols=220 Identities=19% Similarity=0.269 Sum_probs=147.7
Q ss_pred CCcccCccc-CcHHH--HHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeC
Q 002307 420 TGVKFSDVA-GIDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 491 (938)
Q Consensus 420 ~~v~F~dVv-G~dea--k~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~ 491 (938)
+..+|++.+ |-... ...+..++ .++. ...+.++|||++|||||+|++|+++++ +..++++++
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~ava---e~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVA---EAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHH---hCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 567899976 44332 22233332 2221 122359999999999999999999976 568899999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe
Q 002307 492 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (938)
Q Consensus 492 sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ 571 (938)
.+|...+...........|... ...+++|+||||+.+..+.. ...+.-.++|.+. ....
T Consensus 353 eef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke~-------------tqeeLF~l~N~l~-------e~gk 411 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKES-------------TQEEFFHTFNTLH-------NANK 411 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCHH-------------HHHHHHHHHHHHH-------hcCC
Confidence 9988776554333223334432 23568999999999864421 1222333444433 2223
Q ss_pred EEEEEecCC-CC---cCCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCCCCHHHHHH
Q 002307 572 VIFLAATNR-RD---LLDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQ 644 (938)
Q Consensus 572 ViVIAATN~-pd---~LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~GfSgaDL~~ 644 (938)
-+|| |+|. |. .+++.|.+ ||. ..+.+..||.+.|.+||+.++....+.-+.+ +..|+....+ +.++|+.
T Consensus 412 ~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~Leg 487 (617)
T PRK14086 412 QIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEG 487 (617)
T ss_pred CEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHH
Confidence 3444 5555 33 57888988 775 5678899999999999999998766654333 5667777766 7999999
Q ss_pred HHHHHHHHHHHhCCcccchhhHHHHHHhhcc
Q 002307 645 LVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 645 Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
++++....+...+ ..|+.+.+.+++..+..
T Consensus 488 aL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 488 ALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 9998877765544 66999999998876643
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.51 E-value=7.5e-13 Score=146.73 Aligned_cols=208 Identities=23% Similarity=0.325 Sum_probs=133.2
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC-----CCEEEEeCchh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMAGSEF 494 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg-----~pfi~vs~sel 494 (938)
.+.+|++++|.+++++.|.+.+.. + ...+++|+||||||||++|+++++++. .+++.++++++
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~---~---------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS---P---------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC---C---------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 456799999999998888876541 1 122699999999999999999999873 45788888776
Q ss_pred HHHH-------------hhh-------hhHHHHHHHHHHHh-----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhh
Q 002307 495 VEVL-------------VGV-------GSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (938)
Q Consensus 495 ~~~~-------------vG~-------~~~~vr~lF~~Ar~-----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~ 549 (938)
.... .+. ....++.+...... ..+.+|+|||+|.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~----------------- 140 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED----------------- 140 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------------
Confidence 4321 010 11223333333322 23459999999986422
Q ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHH
Q 002307 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLS 628 (938)
Q Consensus 550 ~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~ 628 (938)
....+..++.. .. ....+|.+|+.+..+.+.+.+ |+ ..+.+.+|+.++...+++..+.+.++. .+..+.
T Consensus 141 --~~~~L~~~le~---~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 141 --AQQALRRIMEQ---YS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred --HHHHHHHHHHh---cc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 12233333332 22 223344456566677777876 64 578999999999999999988766544 233467
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHh
Q 002307 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 629 ~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~r 672 (938)
.++..+.| +.+++.+.+. ..+. +...|+.+++.+++.+
T Consensus 211 ~l~~~~~g-dlr~l~~~l~---~~~~--~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 211 LIAYYAGG-DLRKAILTLQ---TAAL--AAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHcCC-CHHHHHHHHH---HHHH--cCCCCCHHHHHHHhCC
Confidence 77877754 5555444444 3332 2347999988876643
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.7e-13 Score=157.10 Aligned_cols=202 Identities=23% Similarity=0.305 Sum_probs=149.0
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC---------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--------------- 484 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~--------------- 484 (938)
.+.+|+||+|++.+++.|.+.+.. .+.++++||+||+|+|||++|+.+|+.+++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 356899999999999988776542 245778999999999999999999997643
Q ss_pred ---------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 485 ---------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 485 ---------pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
.++.+++++ ..+...+|.+.+.+... ...|++|||+|.+..
T Consensus 77 ~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------------- 130 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------------- 130 (491)
T ss_pred HHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------------------
Confidence 234444321 12345677777776432 345999999998742
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~L 630 (938)
..+|.||..++. .+..+++|.+|+.++.+.+.+++ |+ ..+.+..++.++..+.++..+.+.+.. ++..+..+
T Consensus 131 --~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lI 203 (491)
T PRK14964 131 --SAFNALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLI 203 (491)
T ss_pred --HHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 246677877773 44567777778888889999988 65 578999999999999999888776544 23346778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++.+.| +.+++.+++..+...+ ...|+.+++.+.+
T Consensus 204 a~~s~G-slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 204 AENSSG-SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 888866 8999999998887654 2468888877654
No 86
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=1.3e-13 Score=171.11 Aligned_cols=165 Identities=21% Similarity=0.342 Sum_probs=124.4
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeCc
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGS 492 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~s 492 (938)
++++|+|.++....+.+++. . +...+++|+||||||||++|+++|..+ +.+++.++..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~ 243 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHh---c---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence 57889999987555544433 2 123478999999999999999999987 6788998888
Q ss_pred hhH--HHHhhhhhHHHHHHHHHHH-hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCC
Q 002307 493 EFV--EVLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 569 (938)
Q Consensus 493 el~--~~~vG~~~~~vr~lF~~Ar-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~ 569 (938)
.+. ..+.|..+.+++.+|..+. ...++||||||||.+.+.+... +. ......+. ..+ .+
T Consensus 244 ~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~--~~---------~d~~~~lk---p~l----~~ 305 (857)
T PRK10865 244 ALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--GA---------MDAGNMLK---PAL----AR 305 (857)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc--cc---------hhHHHHhc---chh----hc
Confidence 776 3477888999999998864 3578999999999998654321 10 01112222 222 35
Q ss_pred CeEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccc
Q 002307 570 KGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK 620 (938)
Q Consensus 570 ~~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~ 620 (938)
..+.+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..||+.+.....
T Consensus 306 g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 306 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 6799999999876 48999999 998 588999999999999998776543
No 87
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=3.8e-13 Score=156.13 Aligned_cols=226 Identities=19% Similarity=0.241 Sum_probs=145.9
Q ss_pred CCCcccCccc-CcHHH--HHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 419 STGVKFSDVA-GIDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 419 ~~~v~F~dVv-G~dea--k~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
.+..+|++.+ |.... ...+.++. .++.. ......++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a---~~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFT---KVSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHH---hcccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 3567899966 64332 22333332 21110 011233579999999999999999999876 6889999988
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeE
Q 002307 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~V 572 (938)
+|...+...........|.... ..+++|+||||+.+.++.. ...+.-.++|.+.. ....
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~-------------~qeelf~l~N~l~~-------~~k~ 237 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA-------------TQEEFFHTFNSLHT-------EGKL 237 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-------------hHHHHHHHHHHHHH-------CCCc
Confidence 8776554332211122344332 3567999999999864321 22333444554432 1234
Q ss_pred EEEEecCCCC---cCCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCCCCHHHHHHHH
Q 002307 573 IFLAATNRRD---LLDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 573 iVIAATN~pd---~LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~GfSgaDL~~Lv 646 (938)
+|+++++.|. .+++.|.+ ||. ..+.+.+|+.++|..||+..+...++.-+.+ +..++....+ +.++|.+.+
T Consensus 238 IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l 314 (445)
T PRK12422 238 IVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHAL 314 (445)
T ss_pred EEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence 5554544454 56788888 885 7888999999999999999988765443333 4557777766 788999888
Q ss_pred HHHHHH-HHH-hCCcccchhhHHHHHHhhc
Q 002307 647 QEAALV-AVR-KGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 647 ~eA~l~-A~r-~~~~~It~edl~~Ai~rv~ 674 (938)
+..+.. |.. -....|+.+++.+++....
T Consensus 315 ~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 315 TLLAKRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 887532 222 1335799999999998764
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.5e-13 Score=158.75 Aligned_cols=202 Identities=19% Similarity=0.297 Sum_probs=145.0
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|.+.+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 346899999999999998887653 2346678999999999999999999988651
Q ss_pred ---------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhh
Q 002307 486 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYN 546 (938)
Q Consensus 486 ---------------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~ 546 (938)
++.+++. ...+...+|++.+.+... ...|++|||+|.+...
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaa------s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-------------- 139 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAA------SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-------------- 139 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcc------cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH--------------
Confidence 1111111 112334577777765432 2359999999997432
Q ss_pred hhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-c
Q 002307 547 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 625 (938)
Q Consensus 547 ~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-v 625 (938)
..|.||..++. ....+++|.+|+.+..+.+.+++ |+ ..+++..++.++..+.|+..+.+.++.-+ .
T Consensus 140 --------a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~ 206 (618)
T PRK14951 140 --------AFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ 206 (618)
T ss_pred --------HHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 35677777763 45667777777778888888887 64 68899999999999999988876655432 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 626 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 626 dL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
.+..+++.+.| +.+++.+++.++... +...|+.+++...+
T Consensus 207 AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 207 ALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 36778888877 889999988776654 34467776666543
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.49 E-value=1.4e-12 Score=139.31 Aligned_cols=208 Identities=14% Similarity=0.179 Sum_probs=131.8
Q ss_pred CCCCcccCccc-C-cHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 418 GSTGVKFSDVA-G-IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 418 ~~~~v~F~dVv-G-~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
-.+..+|++.+ | ...+...++.+.. . ..+..++||||||||||+|++++++++ +..+.+++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 34566788876 5 3444444444432 1 123479999999999999999999876 4456666665
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeE
Q 002307 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~V 572 (938)
+.... ..++++.... ..+|+|||++.+..+. ..+..+..++..+- +.+...
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----------------~~~~~lf~l~n~~~--e~g~~~ 133 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----------------LWEMAIFDLYNRIL--ESGRTR 133 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----------------HHHHHHHHHHHHHH--HcCCCe
Confidence 43221 1112222221 2589999999975431 12233333333321 112223
Q ss_pred EEEEecCCCCc---CCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCCCCHHHHHHHH
Q 002307 573 IFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 573 iVIAATN~pd~---LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~GfSgaDL~~Lv 646 (938)
+++++++.|.. +.+.|++ |+. .++.+.+|+.+++.++++.++...++.-+.+ ++.+++...| +.+.+.+++
T Consensus 134 li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l 210 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTL 210 (235)
T ss_pred EEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHH
Confidence 55555566655 5789988 875 6889999999999999998776654443223 6778888877 899999999
Q ss_pred HHHHHHHHHhCCcccchhhHHHHH
Q 002307 647 QEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 647 ~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+.....+.. .+..||.+.+.+++
T Consensus 211 ~~l~~~~l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 211 DQLDRASIT-AQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHHh-cCCCCCHHHHHHHH
Confidence 986534433 34568888887765
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=6.4e-13 Score=151.92 Aligned_cols=185 Identities=22% Similarity=0.350 Sum_probs=126.5
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCE----------------
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF---------------- 486 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pf---------------- 486 (938)
.|++|+|++.+++.|++.+..-++ .+..++.+.++++||+||||+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999875332 12344566788999999999999999999999775431
Q ss_pred -------EEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHH
Q 002307 487 -------YQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (938)
Q Consensus 487 -------i~vs~sel~~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~ 555 (938)
..+.... ...+...+|.+++.+... ...|+||||+|.+... .
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~----------------------a 133 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER----------------------A 133 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH----------------------H
Confidence 1111110 112334578888877542 3459999999997432 2
Q ss_pred HHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCC
Q 002307 556 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP 635 (938)
Q Consensus 556 LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~ 635 (938)
.|.||..|+. ++.++++|.+|+.++.+.|++++ |+ ..+.|++|+.++..++|.... +.. ......++..+.
T Consensus 134 anaLLk~LEe--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~ 204 (394)
T PRK07940 134 ANALLKAVEE--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQ 204 (394)
T ss_pred HHHHHHHhhc--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcC
Confidence 3567777763 33444455555558999999998 75 699999999998887776322 222 233566788888
Q ss_pred CCCHHHHHHH
Q 002307 636 GWTGARLAQL 645 (938)
Q Consensus 636 GfSgaDL~~L 645 (938)
|..+..+.-+
T Consensus 205 G~~~~A~~l~ 214 (394)
T PRK07940 205 GHIGRARRLA 214 (394)
T ss_pred CCHHHHHHHh
Confidence 8655544443
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=6.5e-13 Score=157.17 Aligned_cols=209 Identities=20% Similarity=0.261 Sum_probs=145.4
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE--EeC---chh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ--MAG---SEF 494 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~--vs~---sel 494 (938)
.+.+|+||+|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+++.... -.| ...
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 346899999999999988877652 2345678999999999999999999988653110 011 000
Q ss_pred HH-------------HHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 495 VE-------------VLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 495 ~~-------------~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
.. .....+...+|.+...+... ...|++|||+|.+.. ...|
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~----------------------~a~n 137 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK----------------------SAFN 137 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH----------------------HHHH
Confidence 00 00012344577777766432 345999999998742 2356
Q ss_pred HHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCC
Q 002307 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPG 636 (938)
Q Consensus 558 qLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~G 636 (938)
.||..++. .+..+++|.+|+.++.+.+.+++ |+ ..++|..++.++-.+.+...+.+.++..+ ..+..+++.+.|
T Consensus 138 aLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 138 AMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred HHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77777764 44567777777778888878877 64 68899999999999888888866554322 235667777766
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 637 WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 637 fSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
+.+++.+++..+... +...|+.+++...+.
T Consensus 213 -slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 213 -SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 889999999887654 355688877776553
No 92
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.48 E-value=3.9e-13 Score=165.16 Aligned_cols=164 Identities=25% Similarity=0.394 Sum_probs=120.7
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH--------
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-------- 496 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-------- 496 (938)
+++.|++++|+++.+.+...+... ...+..++|+||||||||++++.+|+.++.+|+.++.....+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 458999999999988777533211 123346999999999999999999999999999887654322
Q ss_pred -HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC-----C----
Q 002307 497 -VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-----F---- 566 (938)
Q Consensus 497 -~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg-----~---- 566 (938)
.|.|....++...+..+....| |++|||||.+....++ .....|+..+|. +
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g------------------~~~~aLlevld~~~~~~~~d~~ 456 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG------------------DPASALLEVLDPEQNVAFSDHY 456 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC------------------CHHHHHHHHhccccEEEEeccc
Confidence 3555555666666766665555 8999999998765321 012344444442 0
Q ss_pred ----cCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhc
Q 002307 567 ----DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (938)
Q Consensus 567 ----~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~ 617 (938)
..-+++++|||+|.. .++++|++ |+. .|.+..++.++..+|.+.++.
T Consensus 457 ~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 457 LEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 122679999999987 59999998 995 789999999999999998884
No 93
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.48 E-value=4.9e-13 Score=166.38 Aligned_cols=200 Identities=20% Similarity=0.272 Sum_probs=143.3
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeCc
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGS 492 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~s 492 (938)
+++.++|.++....+.+++. . +...+++|+||||||||++++++|... +.+++.++..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~ 238 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLS---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG 238 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH
Confidence 57889999997555555432 2 223578999999999999999999975 6788888887
Q ss_pred hhH--HHHhhhhhHHHHHHHHHHHh-CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCC
Q 002307 493 EFV--EVLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 569 (938)
Q Consensus 493 el~--~~~vG~~~~~vr~lF~~Ar~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~ 569 (938)
.+. ..+.|..+.+++.+|..+.. ..|+||||||||.+.+.+... + . ....+.|... -.+
T Consensus 239 ~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~--~---------~---~d~~~~Lk~~----l~~ 300 (852)
T TIGR03346 239 ALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE--G---------A---MDAGNMLKPA----LAR 300 (852)
T ss_pred HHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc--c---------h---hHHHHHhchh----hhc
Confidence 775 35788888899999998865 458999999999997643211 0 0 0111222222 234
Q ss_pred CeEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-----CHHHHHhhCCCC--
Q 002307 570 KGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-----DLSSYAKNLPGW-- 637 (938)
Q Consensus 570 ~~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-----dL~~LA~~t~Gf-- 637 (938)
..+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+.........+ .+...+..+.+|
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 6789999999864 47999999 996 58899999999999999887765544333 244455555543
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 002307 638 ---TGARLAQLVQEAALVAVR 655 (938)
Q Consensus 638 ---SgaDL~~Lv~eA~l~A~r 655 (938)
-|.-.-.|+.+|+..+..
T Consensus 378 ~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 378 DRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred ccCCchHHHHHHHHHHHHHHh
Confidence 355677788888766543
No 94
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=8.8e-13 Score=151.54 Aligned_cols=222 Identities=23% Similarity=0.263 Sum_probs=133.2
Q ss_pred cCc-ccCcHHHHHHHHHHHHH----hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-H
Q 002307 424 FSD-VAGIDEAVEELQELVRY----LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-V 497 (938)
Q Consensus 424 F~d-VvG~deak~eL~eiV~~----Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-~ 497 (938)
+++ |+|++++++.|...+.. +.+......-...+..++||+||||||||++|+++|..++.||+.++++.+.. .
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 443 89999999999766532 22111000000123468999999999999999999999999999999988654 4
Q ss_pred HhhhhhHH-HHHHHHHH----HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc-----
Q 002307 498 LVGVGSAR-IRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD----- 567 (938)
Q Consensus 498 ~vG~~~~~-vr~lF~~A----r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~----- 567 (938)
|+|..... +..++..+ ....++||||||||.+..++...+.. .+...+.+.+.||..|++-.
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~--------~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSIT--------RDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcC--------CCcccHHHHHHHHHHHhcCeEEeCC
Confidence 66664433 34444322 23567899999999998763221100 00111234455666666421
Q ss_pred ------CCCeEEEEEecCCCC----------------------------------------------------cCCcccc
Q 002307 568 ------TGKGVIFLAATNRRD----------------------------------------------------LLDPALL 589 (938)
Q Consensus 568 ------~~~~ViVIAATN~pd----------------------------------------------------~LDpALl 589 (938)
.....++|.|+|-.. .+.|+++
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 112345565655400 0233444
Q ss_pred CCCccceEEeccCCChhhHHHHHHH----Hhcc-------cccCCcc---CHHHHHhh--CCCCCHHHHHHHHHHHHHHH
Q 002307 590 RPGRFDRKIRIRAPNAKGRTEILKI----HASK-------VKMSDSV---DLSSYAKN--LPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 590 RpGRFdr~I~V~lPd~eeR~eILr~----~l~~-------~~l~~dv---dL~~LA~~--t~GfSgaDL~~Lv~eA~l~A 653 (938)
||+|.++.+.+.+.++..+|+.. .+++ .++.-.+ -+..+++. ..++-.+.|+.+++....-.
T Consensus 301 --gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 301 --GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred --CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 59999999999999999999873 2221 1111111 24556654 33455667777776666554
Q ss_pred HH
Q 002307 654 VR 655 (938)
Q Consensus 654 ~r 655 (938)
..
T Consensus 379 ~~ 380 (412)
T PRK05342 379 MF 380 (412)
T ss_pred HH
Confidence 43
No 95
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.47 E-value=1.1e-12 Score=144.77 Aligned_cols=161 Identities=22% Similarity=0.301 Sum_probs=112.1
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
++-.+.+|+|++|++++++.+...+.. ...|+.+||+||||+|||++|++++++.+.+++.+++++ .
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~- 79 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C- 79 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-
Confidence 344567899999999999988887651 234566777999999999999999999999999999876 1
Q ss_pred HHhhhhhHHHHHHHHHHH-hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEE
Q 002307 497 VLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVI 575 (938)
. .......+........ ...++||+|||+|.+... .....+..++.. ...++.+|
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------------~~~~~L~~~le~-----~~~~~~~I 135 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------------DAQRHLRSFMEA-----YSKNCSFI 135 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------------HHHHHHHHHHHh-----cCCCceEE
Confidence 1 1111111222111111 135689999999986321 122333444333 23456778
Q ss_pred EecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhc
Q 002307 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (938)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~ 617 (938)
.+||.++.+++++++ |+. .+.++.|+.+++.++++.++.
T Consensus 136 lt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 136 ITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred EEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999998 885 788999999999988776543
No 96
>PLN03025 replication factor C subunit; Provisional
Probab=99.47 E-value=9.7e-13 Score=146.44 Aligned_cols=200 Identities=19% Similarity=0.211 Sum_probs=131.0
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-----CEEEEeCch
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----PFYQMAGSE 493 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~-----pfi~vs~se 493 (938)
-.+.+|+|++|++++++.|+.++.. . .. .++||+||||||||++|+++|+++.. .++.++.++
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~---~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARD---G--------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhc---C--------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 3567899999999999888876542 1 12 25899999999999999999999732 356666654
Q ss_pred hHHHHhhhhhHHHHHHHHHHH-------hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC
Q 002307 494 FVEVLVGVGSARIRDLFKRAK-------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 566 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar-------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~ 566 (938)
... ...++..+.... ...+.|++|||+|.+.... + +.|+..++..
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a-------------------q---~aL~~~lE~~ 126 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA-------------------Q---QALRRTMEIY 126 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH-------------------H---HHHHHHHhcc
Confidence 321 122343332211 1235699999999975321 2 2333334322
Q ss_pred cCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHH
Q 002307 567 DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 567 ~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~L 645 (938)
.....+|.+||....+.+++++ |+ ..+.++.|+.++....++..+++.++. .+..+..++..+.| +.+.+.+.
T Consensus 127 --~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~ 200 (319)
T PLN03025 127 --SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNN 200 (319)
T ss_pred --cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 2334566678888888889988 75 588999999999999999888765543 23346777777655 45555555
Q ss_pred HHHHHHHHHHhCCcccchhhHHHH
Q 002307 646 VQEAALVAVRKGHESILSSDMDDA 669 (938)
Q Consensus 646 v~eA~l~A~r~~~~~It~edl~~A 669 (938)
++ ..+ .+...|+.+++...
T Consensus 201 Lq---~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 201 LQ---ATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HH---HHH--hcCCCCCHHHHHHH
Confidence 54 222 13456777776543
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.47 E-value=1.2e-12 Score=146.58 Aligned_cols=204 Identities=23% Similarity=0.335 Sum_probs=144.8
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC-------------
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------- 485 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p------------- 485 (938)
-.+.+|++++|++++++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+.++
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3567899999999999988877642 2346689999999999999999999987432
Q ss_pred -----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhH
Q 002307 486 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 550 (938)
Q Consensus 486 -----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~ 550 (938)
++.+++.. ..+...++.++..+... ...||+|||+|.+..
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------------- 131 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------------- 131 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-------------------
Confidence 22232221 11233466777765432 235999999998632
Q ss_pred HHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHH
Q 002307 551 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSS 629 (938)
Q Consensus 551 e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~ 629 (938)
...+.++..++. .+.++++|.+||.++.+.+++.+ |+ ..+.+++|+.++..++++.++.+.+..-+ ..+..
T Consensus 132 ---~~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~ 203 (355)
T TIGR02397 132 ---SAFNALLKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALEL 203 (355)
T ss_pred ---HHHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 234567777753 34567777778888888888887 76 47899999999999999998877654322 23566
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 630 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 630 LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
++..+.| +.+.+.+.++.+...+ ...|+.+++.+++.
T Consensus 204 l~~~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 204 IARAADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HHHHcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 6777755 7788888877766543 24589998887764
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.5e-12 Score=155.15 Aligned_cols=202 Identities=24% Similarity=0.318 Sum_probs=146.6
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|++.+.. .+.++.+||+||+|||||++|+.+|+.+.++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 356899999999999999887653 2346679999999999999999999987542
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.++++ .+.+...+|++...+.. ....|++|||+|.+..
T Consensus 80 ~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------------- 133 (559)
T PRK05563 80 KAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------------- 133 (559)
T ss_pred HHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------------
Confidence 2222221 12334557777777653 2345999999998742
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~L 630 (938)
...|.||..++. .+..+++|.+|+.++.+++.+++ |+. .+.|.+|+.++....++..+.+.++..+ ..+..+
T Consensus 134 --~a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~i 206 (559)
T PRK05563 134 --GAFNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLI 206 (559)
T ss_pred --HHHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 236677777763 45567777777888999999987 764 6789999999999999988876654432 336677
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+..+.| +.+++.+++..+...+ ...|+.+++...+
T Consensus 207 a~~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 207 ARAAEG-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 877766 8899999988876542 3467777766543
No 99
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.47 E-value=9.4e-13 Score=160.30 Aligned_cols=209 Identities=21% Similarity=0.289 Sum_probs=139.0
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~v 499 (938)
.+.+|+|++|++........+...+.. ....+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~----- 88 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA----- 88 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-----
Confidence 457899999999987542222222222 122479999999999999999999999999998887531
Q ss_pred hhhhHHHHHHHHHHH-----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 500 GVGSARIRDLFKRAK-----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 500 G~~~~~vr~lF~~Ar-----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
+...++..+..+. .....+|||||||.+.... .+.|+..++ ...+++
T Consensus 89 --~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q----------------------QdaLL~~lE----~g~IiL 140 (725)
T PRK13341 89 --GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ----------------------QDALLPWVE----NGTITL 140 (725)
T ss_pred --hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH----------------------HHHHHHHhc----CceEEE
Confidence 1122344444331 1345699999999874321 123444443 245677
Q ss_pred EEecCC--CCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcc-------cccC-CccCHHHHHhhCCCCCHHHHHH
Q 002307 575 LAATNR--RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-------VKMS-DSVDLSSYAKNLPGWTGARLAQ 644 (938)
Q Consensus 575 IAATN~--pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~-------~~l~-~dvdL~~LA~~t~GfSgaDL~~ 644 (938)
|++|+. ...+++++++ |. ..+.+++++.+++..+++..+.. ..+. ++..+..+++...| +.+++.+
T Consensus 141 I~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln 216 (725)
T PRK13341 141 IGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLN 216 (725)
T ss_pred EEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 766643 3468899998 63 57899999999999999988862 1121 12226778887766 7888999
Q ss_pred HHHHHHHHHHHhCC--cccchhhHHHHHHhhc
Q 002307 645 LVQEAALVAVRKGH--ESILSSDMDDAVDRLT 674 (938)
Q Consensus 645 Lv~eA~l~A~r~~~--~~It~edl~~Ai~rv~ 674 (938)
+++.+...+..... ..|+.+++.+++.+..
T Consensus 217 ~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 217 ALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 98887754422222 2377888888887643
No 100
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.46 E-value=7.5e-13 Score=164.24 Aligned_cols=200 Identities=22% Similarity=0.289 Sum_probs=144.3
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeCc
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGS 492 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~s 492 (938)
.+++|+|.++.++.+.+++.. +.+++++|+||||||||++|+++|.+. +.+++.+++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~ 244 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG 244 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH
Confidence 478899999998887776532 345589999999999999999999976 4789999988
Q ss_pred hhHH--HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCC
Q 002307 493 EFVE--VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (938)
Q Consensus 493 el~~--~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~ 570 (938)
.+.. .|.|..+.+++.+|+.+....++||||||||.+.+.++.. ++ .... +-|...+ .+.
T Consensus 245 ~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~----------~~~a---~lLkp~l----~rg 306 (821)
T CHL00095 245 LLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA----------IDAA---NILKPAL----ARG 306 (821)
T ss_pred HHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc----------ccHH---HHhHHHH----hCC
Confidence 7763 5778889999999999988889999999999998654321 11 0111 1122222 246
Q ss_pred eEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcc----cccC-CccCHHHHHhhCCCC---
Q 002307 571 GVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK----VKMS-DSVDLSSYAKNLPGW--- 637 (938)
Q Consensus 571 ~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~----~~l~-~dvdL~~LA~~t~Gf--- 637 (938)
.+.+|++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... ..+. .+..+..++..+.+|
T Consensus 307 ~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~ 383 (821)
T CHL00095 307 ELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIAD 383 (821)
T ss_pred CcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Confidence 688999999764 47899999 996 5789999999999998865432 2221 222255566665554
Q ss_pred --CHHHHHHHHHHHHHHHHH
Q 002307 638 --TGARLAQLVQEAALVAVR 655 (938)
Q Consensus 638 --SgaDL~~Lv~eA~l~A~r 655 (938)
-|...-.++.+|+.....
T Consensus 384 r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 384 RFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred ccCchHHHHHHHHHHHHHHh
Confidence 355666778888766543
No 101
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.4e-12 Score=154.10 Aligned_cols=203 Identities=20% Similarity=0.311 Sum_probs=142.3
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC---------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--------------- 484 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~--------------- 484 (938)
.+.+|+||+|++.+++.|...+.. .+.++.+||+||+|||||++|+++|+.+.+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 356899999999999988877642 134667899999999999999999998764
Q ss_pred ---------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 485 ---------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 485 ---------pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
.++.+++. ...+...++.+++.+.. ....|++|||+|.+..
T Consensus 80 ~~i~~~~~~dlieidaa------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-------------------- 133 (546)
T PRK14957 80 VAINNNSFIDLIEIDAA------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-------------------- 133 (546)
T ss_pred HHHhcCCCCceEEeecc------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH--------------------
Confidence 12222221 11123345666655432 2346999999998642
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~L 630 (938)
...+.||..|+. .+..+++|.+|+.+..+.+.+++ |. ..+++..++.++....++..+.+.++.. +..+..+
T Consensus 134 --~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~I 206 (546)
T PRK14957 134 --QSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYI 206 (546)
T ss_pred --HHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 235667777763 44566666667778888888877 65 7899999999999888888877655432 2235667
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
+..+.| +.+++.+++..+...+ + ..|+.+++.+++.
T Consensus 207 a~~s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~l~ 242 (546)
T PRK14957 207 AYHAKG-SLRDALSLLDQAISFC---G-GELKQAQIKQMLG 242 (546)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHc
Confidence 777765 8889999988877543 2 5688877777654
No 102
>PRK08727 hypothetical protein; Validated
Probab=99.46 E-value=3.8e-12 Score=135.89 Aligned_cols=208 Identities=19% Similarity=0.243 Sum_probs=132.3
Q ss_pred CCCcccCcccCc-HHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchh
Q 002307 419 STGVKFSDVAGI-DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 494 (938)
Q Consensus 419 ~~~v~F~dVvG~-deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel 494 (938)
.+..+|++.++- +.....+..+. . + .....++|+||+|||||+|++|++.++ +....+++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~---~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALA---A--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHH---h--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 456688887644 44333332221 1 1 123469999999999999999997764 667777776554
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
... +.+.+... ....+|+|||||.+..+. ..+..+..++..+. ....-+|
T Consensus 81 ~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~-----------------~~~~~lf~l~n~~~---~~~~~vI 130 (233)
T PRK08727 81 AGR--------LRDALEAL--EGRSLVALDGLESIAGQR-----------------EDEVALFDFHNRAR---AAGITLL 130 (233)
T ss_pred hhh--------HHHHHHHH--hcCCEEEEeCcccccCCh-----------------HHHHHHHHHHHHHH---HcCCeEE
Confidence 332 23344433 244699999999876432 11223334444331 1222244
Q ss_pred EEecCCCCcC---CccccCCCcc--ceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCCCCHHHHHHHHHH
Q 002307 575 LAATNRRDLL---DPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 575 IAATN~pd~L---DpALlRpGRF--dr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~GfSgaDL~~Lv~e 648 (938)
+.+.+.|..+ +++|.+ || ...+.+++|+.+++.+|++.++....+.-+ ..+..+++.+.| +.+.+.++++.
T Consensus 131 ~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~ 207 (233)
T PRK08727 131 YTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDR 207 (233)
T ss_pred EECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4444456644 788988 87 568899999999999999987765444322 236778888876 67777777877
Q ss_pred HHHHHHHhCCcccchhhHHHHHHh
Q 002307 649 AALVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 649 A~l~A~r~~~~~It~edl~~Ai~r 672 (938)
....+...+ ..||.+.+.+.+..
T Consensus 208 l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 208 LDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHhC-CCCCHHHHHHHHhh
Confidence 665454444 47888888877653
No 103
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.45 E-value=1.5e-12 Score=138.93 Aligned_cols=196 Identities=21% Similarity=0.356 Sum_probs=136.7
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
.+.....+.+++++|++.+|+.|.+-...+.. ..+.+++||||++|||||+++||+.++. |..++.+..
T Consensus 17 ~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 17 PIKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred ecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 34566789999999999999999876654322 2467899999999999999999999866 788898887
Q ss_pred chhHHHHhhhhhHHHHHHHHHHH-hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC--cC
Q 002307 492 SEFVEVLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DT 568 (938)
Q Consensus 492 sel~~~~vG~~~~~vr~lF~~Ar-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~--~~ 568 (938)
.++.. +..++...+ ...+-|||+|++.- . .. +.....|-..|||- ..
T Consensus 89 ~~L~~---------l~~l~~~l~~~~~kFIlf~DDLsF-e-----------------~~---d~~yk~LKs~LeGgle~~ 138 (249)
T PF05673_consen 89 EDLGD---------LPELLDLLRDRPYKFILFCDDLSF-E-----------------EG---DTEYKALKSVLEGGLEAR 138 (249)
T ss_pred HHhcc---------HHHHHHHHhcCCCCEEEEecCCCC-C-----------------CC---cHHHHHHHHHhcCccccC
Confidence 66543 445555544 33456999998641 0 11 12234455556653 45
Q ss_pred CCeEEEEEecCCCCcCCcccc----------CC-----------CccceEEeccCCChhhHHHHHHHHhcccccCCc-cC
Q 002307 569 GKGVIFLAATNRRDLLDPALL----------RP-----------GRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VD 626 (938)
Q Consensus 569 ~~~ViVIAATN~pd~LDpALl----------Rp-----------GRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vd 626 (938)
+++|+|.||+|+.+.+++... .| .||..+|.|..|+.++-.+|+++++...++.-+ ..
T Consensus 139 P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~ 218 (249)
T PF05673_consen 139 PDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEE 218 (249)
T ss_pred CCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 689999999998654433211 11 399999999999999999999999987665533 12
Q ss_pred H----HHHHhhCCCCCHHHHHHHHHH
Q 002307 627 L----SSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 627 L----~~LA~~t~GfSgaDL~~Lv~e 648 (938)
+ .+.|..-.|.||+-..+.++.
T Consensus 219 l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 219 LRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 2 223444556677666665543
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.9e-12 Score=154.10 Aligned_cols=203 Identities=18% Similarity=0.251 Sum_probs=143.4
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+-+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+.+.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 356899999999999999887652 2456678999999999999999999987642
Q ss_pred ------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhh
Q 002307 486 ------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (938)
Q Consensus 486 ------------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~ 549 (938)
++.++++. ..+...+|++.+.+.. ....|++|||+|.+..
T Consensus 77 ~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~------------------ 132 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT------------------ 132 (584)
T ss_pred HHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH------------------
Confidence 12222211 1123445555554432 2335999999998742
Q ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHH
Q 002307 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLS 628 (938)
Q Consensus 550 ~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~ 628 (938)
...|.||..|+ .....+++|.+|+.++.+.+.+++ | ...+.|..++.++..+.++..+.+.+..-+ ..+.
T Consensus 133 ----~A~NALLK~LE--Epp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~ 203 (584)
T PRK14952 133 ----AGFNALLKIVE--EPPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDAVYP 203 (584)
T ss_pred ----HHHHHHHHHHh--cCCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 24667777777 345678888888888999999988 7 568999999999999999888877654322 2345
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 629 ~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
.+++.+.| +.+++.++++.+...+ +...|+.+++...+
T Consensus 204 ~Ia~~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 204 LVIRAGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 56666655 8899999998876443 34567776666553
No 105
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.44 E-value=2.6e-12 Score=154.41 Aligned_cols=219 Identities=19% Similarity=0.262 Sum_probs=145.3
Q ss_pred cccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-------C---CCEEEEe
Q 002307 422 VKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------G---VPFYQMA 490 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------g---~pfi~vs 490 (938)
..-+.|.|.++.+++|..++.. +.. ..+...++|+|+||||||++++.+.+++ + +.+++++
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 3347799999999999888875 321 1222335699999999999999998765 2 5578999
Q ss_pred CchhHHH----------Hhhh-------hhHHHHHHHHHHH--hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 491 GSEFVEV----------LVGV-------GSARIRDLFKRAK--VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 491 ~sel~~~----------~vG~-------~~~~vr~lF~~Ar--~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
|..+... +.+. ....+..+|.... ....+||+|||||.|..+.
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------------ 885 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------------ 885 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------------
Confidence 9543221 1011 1234455665542 2345799999999986431
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCC---CCcCCccccCCCccce-EEeccCCChhhHHHHHHHHhcccc-cCCccC
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNR---RDLLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASKVK-MSDSVD 626 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~---pd~LDpALlRpGRFdr-~I~V~lPd~eeR~eILr~~l~~~~-l~~dvd 626 (938)
+..+..|+.... .....++||+.+|. ++.+++.+.+ ||.. .|.|++++.+++.+||+..+.... .-.+..
T Consensus 886 -QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA 960 (1164)
T PTZ00112 886 -QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA 960 (1164)
T ss_pred -HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH
Confidence 234555555433 23567999999986 5577788877 6654 478899999999999999987532 112222
Q ss_pred HHHHHhh---CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhcc
Q 002307 627 LSSYAKN---LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 627 L~~LA~~---t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
+..+|+. ..| ..+..-.+|+.|+..+ +...|+.+|+.+|+.++..
T Consensus 961 IELIArkVAq~SG-DARKALDILRrAgEik---egskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 961 IQLCARKVANVSG-DIRKALQICRKAFENK---RGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHhhhhcCC-HHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHh
Confidence 4445553 334 4555566777777642 4468999999999987743
No 106
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=2.1e-12 Score=150.21 Aligned_cols=191 Identities=17% Similarity=0.261 Sum_probs=131.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeCchhHHHHhhhhhH---HHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSA---RIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sel~~~~vG~~~~---~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
.++++|||++|||||+|++|+++++ +..++++++.+|...+...... .+...... ...+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3579999999999999999999854 5788999999988776544222 12222122 235669999999988
Q ss_pred hhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCC---cCCccccCCCccc--eEEeccCCC
Q 002307 530 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD---LLDPALLRPGRFD--RKIRIRAPN 604 (938)
Q Consensus 530 ~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd---~LDpALlRpGRFd--r~I~V~lPd 604 (938)
..+.. ..++.-.++|.+. .....+|+++...|. .+++.|.+ ||. ..+.+.+|+
T Consensus 219 ~~k~~-------------~~e~lf~l~N~~~-------~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd 276 (450)
T PRK14087 219 SYKEK-------------TNEIFFTIFNNFI-------ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLD 276 (450)
T ss_pred cCCHH-------------HHHHHHHHHHHHH-------HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcC
Confidence 64321 1222333333332 122334444333444 45788888 885 577788999
Q ss_pred hhhHHHHHHHHhcccccC---CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-CcccchhhHHHHHHhh
Q 002307 605 AKGRTEILKIHASKVKMS---DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG-HESILSSDMDDAVDRL 673 (938)
Q Consensus 605 ~eeR~eILr~~l~~~~l~---~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~-~~~It~edl~~Ai~rv 673 (938)
.++|.+||+..+...++. ++.-+..++....| +.+.+.++|+++...+.... ...|+.+.+.+++...
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 999999999999765431 22236677888877 89999999999986665543 3679999999999775
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.1e-12 Score=153.86 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=141.5
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|.+.+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 456899999999999999887752 1335689999999999999999999988653
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.+++.. ..+...++.+.+.+. .....||||||+|.+..
T Consensus 80 ~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------------- 133 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------------- 133 (624)
T ss_pred HHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH--------------------
Confidence 23333211 112233444433322 23446999999999742
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~L 630 (938)
...+.||..|+. ....+++|.+||.++.+.+.+++ |+ ..+.|+.++.++...+|+..+....+. ++..+..+
T Consensus 134 --~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lI 206 (624)
T PRK14959 134 --EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLI 206 (624)
T ss_pred --HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 235667777763 33567777788888888888887 75 478999999999999998887765543 22336677
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++.+.| +.+++.+++.++. + .+...|+.+++..++
T Consensus 207 A~~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 207 ARRAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred HHHcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 777766 6778878877653 2 244578888877665
No 108
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.2e-12 Score=158.87 Aligned_cols=207 Identities=20% Similarity=0.204 Sum_probs=140.0
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEE----E-EeCchh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY----Q-MAGSEF 494 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi----~-vs~sel 494 (938)
...+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|++||+.+.|.-- - -.|...
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 456899999999999998887652 235567899999999999999999999865210 0 001111
Q ss_pred HHHHhh---------------hhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHH
Q 002307 495 VEVLVG---------------VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (938)
Q Consensus 495 ~~~~vG---------------~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~ 555 (938)
.....| .+...+|++.+.+. .....|+||||+|.|.. ..
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~----------------------~a 136 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP----------------------QG 136 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH----------------------HH
Confidence 110000 12334555544332 23456999999999742 23
Q ss_pred HHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-CHHHHHhhC
Q 002307 556 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNL 634 (938)
Q Consensus 556 LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-dL~~LA~~t 634 (938)
.|.||..|+. ....+++|.+|+.++.|.+.|++ |. .++.|..++.++..++|+..+.+.++..+. .+..+++..
T Consensus 137 ~NaLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~s 211 (824)
T PRK07764 137 FNALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAG 211 (824)
T ss_pred HHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5667777763 44577777778888888888887 64 688999999999999999888766554222 355667777
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHH
Q 002307 635 PGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (938)
Q Consensus 635 ~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~ 668 (938)
.| +.+++.++++..+..+ +...|+.+++..
T Consensus 212 gG-dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 212 GG-SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred CC-CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 66 8888888888766332 344566665544
No 109
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.42 E-value=6.8e-13 Score=152.91 Aligned_cols=284 Identities=22% Similarity=0.276 Sum_probs=181.5
Q ss_pred HHHHhhheeeeecccccccchhhhhhhhhhHhhhHHHHHHhhcCCCccccccccccccchhhHHhhHHHHHHHHHHHHHH
Q 002307 305 TSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSGEGGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLL 384 (938)
Q Consensus 305 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 384 (938)
.|+.++..++...|....+. +.++.+. ++.++++. .|.+++ +.+|+.+-.++..+-.++
T Consensus 62 ~Gl~ll~~i~~~~~~~pVI~------~Tg~g~i--~~AV~A~k-~GA~Df------------l~KP~~~~~L~~~v~ral 120 (464)
T COG2204 62 DGLELLKEIKSRDPDLPVIV------MTGHGDI--DTAVEALR-LGAFDF------------LEKPFDLDRLLAIVERAL 120 (464)
T ss_pred chHHHHHHHHhhCCCCCEEE------EeCCCCH--HHHHHHHh-cCccee------------eeCCCCHHHHHHHHHHHH
Confidence 56777888888888888777 7777665 77777664 355555 456777777777776666
Q ss_pred HHHHhhcCCCCccccccccccccccccccccccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEE
Q 002307 385 IRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLE 464 (938)
Q Consensus 385 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~ 464 (938)
....+.+..+. ........+.+++|.+.+++++.+.+..+...+ -.|||+
T Consensus 121 ~~~~~~~e~~~--------------------~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~----------a~VLI~ 170 (464)
T COG2204 121 ELRELQRENRR--------------------SLKRAKSLGGELVGESPAMQQLRRLIAKVAPSD----------ASVLIT 170 (464)
T ss_pred HHhhhhhhhhh--------------------hhhccccccCCceecCHHHHHHHHHHHHHhCCC----------CCEEEE
Confidence 43322221110 111233467889999999999999998876554 379999
Q ss_pred cCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH-----Hhhhh----h---HHHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 465 GPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-----LVGVG----S---ARIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 465 GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~-----~vG~~----~---~~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
|++||||.++|++|.+.. +.||+.+||..+... +.|.. . .+-...|+.|. ...||||||..+
T Consensus 171 GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~m 247 (464)
T COG2204 171 GESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEM 247 (464)
T ss_pred CCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccC
Confidence 999999999999998755 679999999765543 22211 1 11223455544 349999999987
Q ss_pred hhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc--CCc----CCCeEEEEEecCCCCcCCccccCCCccc-------e
Q 002307 530 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFD----TGKGVIFLAATNRRDLLDPALLRPGRFD-------R 596 (938)
Q Consensus 530 ~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD--g~~----~~~~ViVIAATN~pd~LDpALlRpGRFd-------r 596 (938)
... .+.-+-..|++-. ... .+-+|.||+|||+. |...+- .|||. .
T Consensus 248 pl~-------------------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLn 305 (464)
T COG2204 248 PLE-------------------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD--LEEEVA-AGRFREDLYYRLN 305 (464)
T ss_pred CHH-------------------HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhc
Confidence 543 2333444444321 111 12468999999962 222222 24443 2
Q ss_pred EEeccCCChhhHHH----HHHHHhcccc----c-CCccCHHHHHhh----CCCCCHHHHHHHHHHHHHHHHHhCCcccch
Q 002307 597 KIRIRAPNAKGRTE----ILKIHASKVK----M-SDSVDLSSYAKN----LPGWTGARLAQLVQEAALVAVRKGHESILS 663 (938)
Q Consensus 597 ~I~V~lPd~eeR~e----ILr~~l~~~~----l-~~dvdL~~LA~~----t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~ 663 (938)
++.+..|+..+|.+ ++++++++.. . ...++-..++.. ++| +.++|+|++.+++..+ ....|+.
T Consensus 306 V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPG-NVREL~N~ver~~il~---~~~~i~~ 381 (464)
T COG2204 306 VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPG-NVRELENVVERAVILS---EGPEIEV 381 (464)
T ss_pred cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCh-HHHHHHHHHHHHHhcC---Cccccch
Confidence 67888899988877 4455554422 1 133443334333 455 6789999999998877 5566777
Q ss_pred hhHHH
Q 002307 664 SDMDD 668 (938)
Q Consensus 664 edl~~ 668 (938)
+++..
T Consensus 382 ~~l~~ 386 (464)
T COG2204 382 EDLPL 386 (464)
T ss_pred hhccc
Confidence 66553
No 110
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4.7e-12 Score=152.82 Aligned_cols=208 Identities=25% Similarity=0.361 Sum_probs=146.9
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE---EeCchhHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ---MAGSEFVE 496 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~---vs~sel~~ 496 (938)
.+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.++--. -.|.....
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 466899999999999998887752 2456788999999999999999999988653210 01111111
Q ss_pred H-------H-----hhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHH
Q 002307 497 V-------L-----VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLL 560 (938)
Q Consensus 497 ~-------~-----vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL 560 (938)
. + ...+...+|.+.+.+.. ....|++|||+|.+.. ...+.||
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----------------------~A~NALL 139 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----------------------SAFNALL 139 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----------------------HHHHHHH
Confidence 0 0 01234457777776653 2346999999998742 2366777
Q ss_pred HHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-CHHHHHhhCCCCCH
Q 002307 561 IELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTG 639 (938)
Q Consensus 561 ~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-dL~~LA~~t~GfSg 639 (938)
..|+. ++..+++|.+|+.++.|.+.+++ |+ ..+.+.+|+.++....++..+.+.++..+. .+..+|..+.| +.
T Consensus 140 KtLEE--PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-sl 213 (725)
T PRK07133 140 KTLEE--PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SL 213 (725)
T ss_pred HHhhc--CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 77763 45677777788888999999988 76 489999999999999998887765544322 26667777766 78
Q ss_pred HHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 640 ARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 640 aDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+++.+++..+...+ ...|+.+++.+++
T Consensus 214 R~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 214 RDALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 88888888766442 2347877776654
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=5e-12 Score=143.06 Aligned_cols=209 Identities=22% Similarity=0.338 Sum_probs=139.8
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh-----
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF----- 494 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel----- 494 (938)
.+.+|+||+|++.+++.+.+.+.. .+.++++|||||||+|||++|+++|+...++.....+..+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 567899999999998888777642 1346789999999999999999999987552211111000
Q ss_pred -HHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCC
Q 002307 495 -VEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 569 (938)
Q Consensus 495 -~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~ 569 (938)
.+.....+...++.++..+.. ..+.||+|||+|.+.. ..++.++..++. ..
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----------------------~~~~~ll~~le~--~~ 136 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----------------------AAFNAFLKTLEE--PP 136 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------------------HHHHHHHHHHhC--CC
Confidence 000011223456777776542 2346999999997642 124556665653 23
Q ss_pred CeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHH
Q 002307 570 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 570 ~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~e 648 (938)
...++|.+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+.+.++. ++..+..++..+.| +.+.+.+.++.
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred CceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 445555567777888888887 65 478999999999999998888766543 23346677777655 77777777776
Q ss_pred HHHHHHHhCCcccchhhHHHHHH
Q 002307 649 AALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 649 A~l~A~r~~~~~It~edl~~Ai~ 671 (938)
....+ +.. |+.+++...+.
T Consensus 213 l~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 213 VVTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred HHHhc---CCC-CCHHHHHHHhC
Confidence 66544 323 78777776654
No 112
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3.3e-12 Score=152.76 Aligned_cols=201 Identities=22% Similarity=0.343 Sum_probs=144.6
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++++++.|.+.+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 356899999999999999887652 2456788999999999999999999987643
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.+++.. ..+...++++...+... ...|++|||+|.+..
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-------------------- 133 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-------------------- 133 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH--------------------
Confidence 22222211 12334567777665422 235999999998742
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~L 630 (938)
...|.||..|+ +....+++|.+||.++.|.+.+++ |+ ..+.|..++.++....++..+++.++. ++..+..+
T Consensus 134 --~a~naLLk~LE--epp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~l 206 (576)
T PRK14965 134 --NAFNALLKTLE--EPPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALV 206 (576)
T ss_pred --HHHHHHHHHHH--cCCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 23567777776 345677777888888999999987 64 478899999998888888888766544 22336777
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 669 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~A 669 (938)
++.+.| +.+++.+++..+.... + ..|+.+++...
T Consensus 207 a~~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 207 ARKGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 888876 7888888888766553 2 35777776654
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.8e-12 Score=150.14 Aligned_cols=202 Identities=22% Similarity=0.303 Sum_probs=141.8
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|++|+|++.+++.|.+.+.. .+.++++||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 456899999999999888876532 2456789999999999999999999987541
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.++++. ..+...+|.+...+... ...|++|||+|.+..
T Consensus 80 r~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-------------------- 133 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-------------------- 133 (605)
T ss_pred HHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------------
Confidence 12222111 12334567776655432 235999999998632
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~L 630 (938)
...+.||..|+ .++..+++|.+|+.++.+.+++++ |+ ..+.+.+|+.++....++..+.+.+.. ++..+..+
T Consensus 134 --~A~NaLLKtLE--EPp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~L 206 (605)
T PRK05896 134 --SAWNALLKTLE--EPPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKI 206 (605)
T ss_pred --HHHHHHHHHHH--hCCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 12456777666 344567777788888999999988 75 478999999999999999888765432 22236677
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+..+.| +.+++.++++.+...+ + ..|+.+++.+.+
T Consensus 207 a~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~ell 241 (605)
T PRK05896 207 ADLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINKTF 241 (605)
T ss_pred HHHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 777766 7888888888755443 3 238887777653
No 114
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.40 E-value=4.6e-12 Score=145.29 Aligned_cols=219 Identities=23% Similarity=0.272 Sum_probs=132.9
Q ss_pred ccCcHHHHHHHHHHHHH----hcC-chhhhccCC-CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-HHh
Q 002307 427 VAGIDEAVEELQELVRY----LKN-PELFDKMGI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLV 499 (938)
Q Consensus 427 VvG~deak~eL~eiV~~----Lk~-pe~~~~lG~-~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-~~v 499 (938)
|+|++++++.+...+.. +.. +..-..-++ ....++||+||||||||++|+++|..++.||..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 68999999999776632 221 000000011 12458999999999999999999999999999999887643 466
Q ss_pred hhh-hHHHHHHHHHH----HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC------
Q 002307 500 GVG-SARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT------ 568 (938)
Q Consensus 500 G~~-~~~vr~lF~~A----r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~------ 568 (938)
|.. ...+..++..+ ....++||||||||.+.+++...... .+...+.+.+.||+.|+|...
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~--------~dvsg~~vq~~LL~iLeG~~~~v~~~~ 230 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSIT--------RDVSGEGVQQALLKIIEGTVANVPPQG 230 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccccc--------ccccchhHHHHHHHHhhccceecccCC
Confidence 654 23334444322 23467899999999998754321110 000012344455555554321
Q ss_pred -----CCeEEEEEecCCC---------------------------C-----------------------cCCccccCCCc
Q 002307 569 -----GKGVIFLAATNRR---------------------------D-----------------------LLDPALLRPGR 593 (938)
Q Consensus 569 -----~~~ViVIAATN~p---------------------------d-----------------------~LDpALlRpGR 593 (938)
..+.++|.|+|-. + .+.|+++ ||
T Consensus 231 gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gR 308 (413)
T TIGR00382 231 GRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GR 308 (413)
T ss_pred CccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CC
Confidence 2346777777751 0 0234444 49
Q ss_pred cceEEeccCCChhhHHHHHHHH----hccc-------ccCC---ccCHHHHHhh--CCCCCHHHHHHHHHHHHHHHHH
Q 002307 594 FDRKIRIRAPNAKGRTEILKIH----ASKV-------KMSD---SVDLSSYAKN--LPGWTGARLAQLVQEAALVAVR 655 (938)
Q Consensus 594 Fdr~I~V~lPd~eeR~eILr~~----l~~~-------~l~~---dvdL~~LA~~--t~GfSgaDL~~Lv~eA~l~A~r 655 (938)
+|.++.+.+.+.++..+|+... +++. ++.- +.-++.+++. ...+-.+.|+.++++...-+..
T Consensus 309 ld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 309 LPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 9999999999999999998753 2211 1111 1114556654 3345567777777777665544
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.40 E-value=3.7e-12 Score=134.94 Aligned_cols=200 Identities=22% Similarity=0.311 Sum_probs=122.7
Q ss_pred CCcccCccc-Cc--HHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeC
Q 002307 420 TGVKFSDVA-GI--DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 491 (938)
Q Consensus 420 ~~v~F~dVv-G~--deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~ 491 (938)
+..+|++.+ |- ..+......+. .++. .....++||||+|+|||+|.+|++++. +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia---~~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIA---ENPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHH---HSTT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHH---hcCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567899975 53 23333333332 2222 122468999999999999999999874 677999999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe
Q 002307 492 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (938)
Q Consensus 492 sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ 571 (938)
.+|...+...........|.... ....+|+||++|.+..+. ..+..+..++..+ ...+.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~~-----------------~~q~~lf~l~n~~---~~~~k 131 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGKQ-----------------RTQEELFHLFNRL---IESGK 131 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTHH-----------------HHHHHHHHHHHHH---HHTTS
T ss_pred HHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCch-----------------HHHHHHHHHHHHH---HhhCC
Confidence 99988765543222112232222 245699999999986442 1222333333332 23344
Q ss_pred EEEEEecCCCCc---CCccccCCCccce--EEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCCCCHHHHHHH
Q 002307 572 VIFLAATNRRDL---LDPALLRPGRFDR--KIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 572 ViVIAATN~pd~---LDpALlRpGRFdr--~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~GfSgaDL~~L 645 (938)
.+|+++...|.. +++.|.+ ||.. .+.+..|+.+.|.+|++..+...++.-+.+ +.-++...++ +.++|+.+
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~ 208 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGA 208 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHH
T ss_pred eEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHH
Confidence 566666566664 4667777 7654 888999999999999999998877664434 5557777665 89999999
Q ss_pred HHHHHHHH
Q 002307 646 VQEAALVA 653 (938)
Q Consensus 646 v~eA~l~A 653 (938)
+++....+
T Consensus 209 l~~l~~~~ 216 (219)
T PF00308_consen 209 LNRLDAYA 216 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98877655
No 116
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=8.5e-12 Score=146.33 Aligned_cols=208 Identities=24% Similarity=0.305 Sum_probs=140.6
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC-------EEEE-eC
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------FYQM-AG 491 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------fi~v-s~ 491 (938)
.+.+|+|++|++.+++.|.+.+.. .+.++.+||+||+|+|||++|+.+|..+++. +-.+ +|
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 456899999999999988877642 2345678999999999999999999987641 1110 11
Q ss_pred chhHH-----H-----HhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 492 SEFVE-----V-----LVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 492 sel~~-----~-----~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
..+.. . ....+...+|.+.+.+.. ....|++|||+|.+.. ...+
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~----------------------~a~n 137 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK----------------------EAFN 137 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH----------------------HHHH
Confidence 11100 0 001223345666555532 2346999999998642 1245
Q ss_pred HHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-CHHHHHhhCCC
Q 002307 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPG 636 (938)
Q Consensus 558 qLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-dL~~LA~~t~G 636 (938)
.|+..++. .+..+++|.+|+.++.+.+++.+ |+ ..+.+.+|+.++...+++.+++..++..+. .+..++..+.|
T Consensus 138 aLLk~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 138 ALLKTLEE--PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHHHHHhc--CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66666663 33455555566777888888887 65 478999999999999999988876654322 35667777766
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 637 WTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 637 fSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+.+++.++++.+... +...|+.+++..++
T Consensus 213 -~lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 213 -GMRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 788888888887644 23468888877755
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=8.2e-12 Score=149.42 Aligned_cols=209 Identities=22% Similarity=0.251 Sum_probs=146.9
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEe---------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA--------- 490 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs--------- 490 (938)
.+.+|+||+|++.+++.|.+.+.. .+.++.+||+||+|+|||++|+++|+.+.+.....+
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 456899999999999999887652 245778999999999999999999998865421111
Q ss_pred ----CchhHHH----------HhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHH
Q 002307 491 ----GSEFVEV----------LVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 552 (938)
Q Consensus 491 ----~sel~~~----------~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~ 552 (938)
|..+.+. -...+...+|.+++.+... ...|++|||+|.+..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------------- 146 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST--------------------- 146 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------------
Confidence 1111100 0012345677787766532 346999999998742
Q ss_pred HHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHH
Q 002307 553 ETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYA 631 (938)
Q Consensus 553 ~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA 631 (938)
...|.||..|+. ....+++|.+|+.++.+.+.+++ |+ ..+.+..|+.++....++..+.+.+..-+ ..+..++
T Consensus 147 -~a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 147 -AAFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred -HHHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 235667777763 34566666677777788888887 75 58999999999999999988876654433 3356677
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 632 KNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 632 ~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
+.+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 221 ~~a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 221 RAAEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHcCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 77766 899999998876644 234688888877653
No 118
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.1e-11 Score=146.21 Aligned_cols=201 Identities=23% Similarity=0.292 Sum_probs=142.7
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.++
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 456899999999999999887642 2456678999999999999999999987421
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.++++. ..+...++++...+... ...|++|||+|.+..
T Consensus 78 ~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------------- 131 (535)
T PRK08451 78 QSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------------- 131 (535)
T ss_pred HHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------------
Confidence 22222211 01234566666554321 225999999998742
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~L 630 (938)
...|.||..|+. .+..+.+|.+|+.+..+.+++++ | ...+++.+++.++....++..+...+..- +..+..+
T Consensus 132 --~A~NALLK~LEE--pp~~t~FIL~ttd~~kL~~tI~S--R-c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~I 204 (535)
T PRK08451 132 --EAFNALLKTLEE--PPSYVKFILATTDPLKLPATILS--R-TQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEIL 204 (535)
T ss_pred --HHHHHHHHHHhh--cCCceEEEEEECChhhCchHHHh--h-ceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 235667777764 34556666677778999999998 7 46899999999999998988887655432 2346677
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 669 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~A 669 (938)
+..+.| +.+++.+++..+...+ ...|+.+++.+.
T Consensus 205 a~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 205 ARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 777766 8999999998887654 345677666554
No 119
>PRK05642 DNA replication initiation factor; Validated
Probab=99.39 E-value=1.7e-11 Score=131.00 Aligned_cols=179 Identities=16% Similarity=0.204 Sum_probs=121.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 534 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~ 534 (938)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+..+. ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 3679999999999999999998754 6788889888776531 122232222 2489999999875432
Q ss_pred CccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCc---CCccccCCCccc--eEEeccCCChhhHH
Q 002307 535 GIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRT 609 (938)
Q Consensus 535 ~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~---LDpALlRpGRFd--r~I~V~lPd~eeR~ 609 (938)
..+..+..++..+ ..++..++++++..|.. ..+.|.+ ||. ..+.+..|+.++|.
T Consensus 114 ----------------~~~~~Lf~l~n~~---~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 114 ----------------DWEEALFHLFNRL---RDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred ----------------HHHHHHHHHHHHH---HhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHH
Confidence 1122233333322 23345677766665543 3688888 874 67788999999999
Q ss_pred HHHHHHhcccccCC-ccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 610 EILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 610 eILr~~l~~~~l~~-dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
.+++..+....+.- +.-++.+++...+ +.+.+.++++.....+.. .+..||..-+.+++
T Consensus 173 ~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 173 RALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 99997665544432 2236667787777 899999999887654443 34668887777765
No 120
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.39 E-value=1.1e-11 Score=134.53 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=117.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch------hHHHHhhhhhHHHH--------------------HHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE------FVEVLVGVGSARIR--------------------DLFK 511 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se------l~~~~vG~~~~~vr--------------------~lF~ 511 (938)
...+||+||||||||++|+++|...|.|++.++|.. ++..+.+.....+. ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 357999999999999999999999999999998754 22222221111111 1122
Q ss_pred HHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc----CC-------cCCCeEEEEEecCC
Q 002307 512 RAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD----GF-------DTGKGVIFLAATNR 580 (938)
Q Consensus 512 ~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD----g~-------~~~~~ViVIAATN~ 580 (938)
.|.. .+.+|+|||||.+.+. .+..+..+|.+-. +. ....++.||+|+|.
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-------------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-------------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-------------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 2222 3459999999985432 2333444443210 00 02246789999997
Q ss_pred CC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc--CHHHHHhhC------CCCCHHHHHHHHH
Q 002307 581 RD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV--DLSSYAKNL------PGWTGARLAQLVQ 647 (938)
Q Consensus 581 pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv--dL~~LA~~t------~GfSgaDL~~Lv~ 647 (938)
.. .+++++++ || ..++++.|+.++..+|++.+.. ..... .+-.++..+ ...+ .+.++.
T Consensus 161 ~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~ 231 (262)
T TIGR02640 161 VEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLM 231 (262)
T ss_pred ccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHH
Confidence 53 56889998 88 6889999999999999998762 22111 111222111 1223 444444
Q ss_pred HHHHHHHHhCCcccchhhHHHHHHhhcc
Q 002307 648 EAALVAVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 648 eA~l~A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
-+...+....+..++.+||.+....++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 232 IAEVATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHHHHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 4555555556778888888888777654
No 121
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.38 E-value=5.2e-12 Score=138.92 Aligned_cols=209 Identities=23% Similarity=0.345 Sum_probs=135.3
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC---EEEEeCchhHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEFVE 496 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p---fi~vs~sel~~ 496 (938)
.+.+++|.+|+++...+ ..++..+-..+ .-.+++||||||||||+||+.|+.....+ |+.+++.
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq~--------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt---- 199 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQN--------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT---- 199 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHcC--------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc----
Confidence 45678999999887655 23332211111 11268999999999999999999988766 7777764
Q ss_pred HHhhhhhHHHHHHHHHHHhC-----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe
Q 002307 497 VLVGVGSARIRDLFKRAKVN-----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~-----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ 571 (938)
......+|++|+.+++. ..-|||||||+.+...++. .||-. ..+..
T Consensus 200 ---~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD----------------------~fLP~----VE~G~ 250 (554)
T KOG2028|consen 200 ---NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD----------------------TFLPH----VENGD 250 (554)
T ss_pred ---ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh----------------------cccce----eccCc
Confidence 23455689999988653 3469999999997654321 12222 23456
Q ss_pred EEEEEecC-CC-CcCCccccCCCccceEEeccCCChhhHHHHHHHHhccc--------ccCC------ccCHHHHHhhCC
Q 002307 572 VIFLAATN-RR-DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV--------KMSD------SVDLSSYAKNLP 635 (938)
Q Consensus 572 ViVIAATN-~p-d~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~--------~l~~------dvdL~~LA~~t~ 635 (938)
|++|++|. .| -.|..+|++ | ++++.+...+.+.-..||.+-...+ ++.. +--++-++..+.
T Consensus 251 I~lIGATTENPSFqln~aLlS--R-C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd 327 (554)
T KOG2028|consen 251 ITLIGATTENPSFQLNAALLS--R-CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD 327 (554)
T ss_pred eEEEecccCCCccchhHHHHh--c-cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcC
Confidence 78887763 34 378999998 6 4577888888888888888744311 1221 112567788888
Q ss_pred CCCHHHHHHHHHHHH-HHHHHhC---CcccchhhHHHHHHhhc
Q 002307 636 GWTGARLAQLVQEAA-LVAVRKG---HESILSSDMDDAVDRLT 674 (938)
Q Consensus 636 GfSgaDL~~Lv~eA~-l~A~r~~---~~~It~edl~~Ai~rv~ 674 (938)
|=..+.|..| .-++ +...|.+ +..++.+|+.+++.+--
T Consensus 328 GDaR~aLN~L-ems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 328 GDARAALNAL-EMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred chHHHHHHHH-HHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 8444444333 3332 2223333 34688999999987753
No 122
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.38 E-value=2.2e-12 Score=144.50 Aligned_cols=219 Identities=21% Similarity=0.334 Sum_probs=133.7
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCCE--EEEe
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPF--YQMA 490 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------g~pf--i~vs 490 (938)
....|++|+|++++++.|.-.+. + ....++||.|+||||||++|+++|+-+ ++++ ..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~---------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---D---------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---c---------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999887754211 0 112579999999999999999999977 3322 1111
Q ss_pred C-chh--------HH---------------HHhhh---------hhHH-HHHHHHHHHhCCCeEEEEcCcchhhhhhcCc
Q 002307 491 G-SEF--------VE---------------VLVGV---------GSAR-IRDLFKRAKVNKPSVIFIDEIDALATRRQGI 536 (938)
Q Consensus 491 ~-sel--------~~---------------~~vG~---------~~~~-vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~ 536 (938)
+ .+. .. ..+|. +... ....+.. ....+||||||+.+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~---A~~GiL~lDEInrl~~~---- 143 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLAR---ANRGYLYIDEVNLLEDH---- 143 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEE---cCCCeEEecChHhCCHH----
Confidence 1 000 00 01110 0000 0011111 12249999999997533
Q ss_pred cCCcchhhhhhhhHHHHHHHHHHHHHh------cCC--cCCCeEEEEEecCCCC-cCCccccCCCccceEEeccCCCh-h
Q 002307 537 FKDTTDHLYNAATQERETTLNQLLIEL------DGF--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAPNA-K 606 (938)
Q Consensus 537 ~~~~~~~~~~~~~~e~~~~LnqLL~eL------Dg~--~~~~~ViVIAATN~pd-~LDpALlRpGRFdr~I~V~lPd~-e 606 (938)
.+..+.+.+.+- +|. ..+..+++++++|..+ .++++++. ||...+.++.|.. +
T Consensus 144 ---------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~ 206 (334)
T PRK13407 144 ---------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVE 206 (334)
T ss_pred ---------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHH
Confidence 222333333221 111 1235689999999755 68899998 9999999998866 8
Q ss_pred hHHHHHHHHhcccc----c------C---------------Ccc--C------HHHHHhhCC-CCCHHHHHHHHHHHHHH
Q 002307 607 GRTEILKIHASKVK----M------S---------------DSV--D------LSSYAKNLP-GWTGARLAQLVQEAALV 652 (938)
Q Consensus 607 eR~eILr~~l~~~~----l------~---------------~dv--d------L~~LA~~t~-GfSgaDL~~Lv~eA~l~ 652 (938)
+|.+|++....... . . ..+ + +.+++..+. .-..+++. +++.|...
T Consensus 207 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~ 285 (334)
T PRK13407 207 TRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARAL 285 (334)
T ss_pred HHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHH
Confidence 99999987542110 0 0 000 0 122333332 12345666 99999999
Q ss_pred HHHhCCcccchhhHHHHHHhhcc
Q 002307 653 AVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 653 A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
|..++++.|+.+|+..+..-++.
T Consensus 286 A~l~Gr~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 286 AAFEGAEAVGRSHLRSVATMALS 308 (334)
T ss_pred HHHcCCCeeCHHHHHHHHHHhhh
Confidence 99999999999999888765553
No 123
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.2e-11 Score=143.86 Aligned_cols=203 Identities=21% Similarity=0.303 Sum_probs=139.6
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 457899999999999988877642 2456789999999999999999999987542
Q ss_pred -----------EEEEeCchhHHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhH
Q 002307 486 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 550 (938)
Q Consensus 486 -----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~ 550 (938)
++.+++.. ..+...++.+.+... .....|++|||+|.+..
T Consensus 81 C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------------------- 135 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------------------- 135 (451)
T ss_pred HHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-------------------
Confidence 22222211 011233444333221 23567999999998742
Q ss_pred HHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHH
Q 002307 551 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSS 629 (938)
Q Consensus 551 e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~ 629 (938)
...+.|+..++. .+..+++|.+||.+..+.+++++ |+ ..+++..++.++....++..+.+.+.. ++..+..
T Consensus 136 ---~~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~ 207 (451)
T PRK06305 136 ---EAFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLP 207 (451)
T ss_pred ---HHHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 124667777764 34566777777888889999987 75 478999999999999888887765543 2234677
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 630 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 630 LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
++..+.| +.+++.++++..... .+ ..|+.+++.+++.
T Consensus 208 L~~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~~ 244 (451)
T PRK06305 208 IARAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKALG 244 (451)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHHC
Confidence 7877766 677777777665433 12 4488888776653
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.38 E-value=1.2e-11 Score=151.24 Aligned_cols=166 Identities=25% Similarity=0.375 Sum_probs=115.1
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-----HHhh
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-----VLVG 500 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-----~~vG 500 (938)
.|+|++++++.|.+.+...+..-. . ..+|...+||+||||||||++|+++|..++.+|+.++|+++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 478999999999998876432100 0 0123346999999999999999999999999999999998753 3444
Q ss_pred hhhHH----HHHHH-HHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc-CC--c-----
Q 002307 501 VGSAR----IRDLF-KRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-GF--D----- 567 (938)
Q Consensus 501 ~~~~~----vr~lF-~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD-g~--~----- 567 (938)
..... ....+ ...+.+..|||||||||.+.+. ..+.|++.|| |. +
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~----------------------v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD----------------------VFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH----------------------HHHHHHHHHhcCeeecCCCce
Confidence 32111 11223 3334455689999999996432 3445555554 21 0
Q ss_pred -CCCeEEEEEecCCC-------------------------CcCCccccCCCccceEEeccCCChhhHHHHHHHHhcc
Q 002307 568 -TGKGVIFLAATNRR-------------------------DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 618 (938)
Q Consensus 568 -~~~~ViVIAATN~p-------------------------d~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~ 618 (938)
.-.+++||+|||.- ..+.|.++. |+|.+|.|++.+.++..+|++..+..
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 11468899999932 124566766 99999999999999999999877653
No 125
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.37 E-value=9.9e-12 Score=141.53 Aligned_cols=88 Identities=30% Similarity=0.488 Sum_probs=62.0
Q ss_pred cccCcHHHHHHHHHHHHH-hcCchhhhcc-CCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-HHhh-h
Q 002307 426 DVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG-V 501 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~-Lk~pe~~~~l-G~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-~~vG-~ 501 (938)
.|+|++++|+.+...+.. ++.......+ .--+|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 488999999999776653 2222111111 1235689999999999999999999999999999999887764 4555 3
Q ss_pred hhHHHHHHHHHH
Q 002307 502 GSARIRDLFKRA 513 (938)
Q Consensus 502 ~~~~vr~lF~~A 513 (938)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 344445544443
No 126
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.3e-11 Score=147.11 Aligned_cols=208 Identities=19% Similarity=0.235 Sum_probs=142.6
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC-------EEEE-eC
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------FYQM-AG 491 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------fi~v-s~ 491 (938)
.+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+. .-.+ +|
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 456899999999999998887752 2346679999999999999999999988652 1111 01
Q ss_pred chhHHH-------Hhh---hhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 492 SEFVEV-------LVG---VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 492 sel~~~-------~vG---~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
..+... +-| .+...++.+.+.+. .....|++|||+|.+.. ...|
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~----------------------~a~n 137 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN----------------------SAFN 137 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH----------------------HHHH
Confidence 000000 001 12234555554433 23446999999998732 2456
Q ss_pred HHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhCCC
Q 002307 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPG 636 (938)
Q Consensus 558 qLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t~G 636 (938)
.||..++ ..+..+++|.+|+.++.+.+++++ |+. .+.+.+++.++..++++..+...++.- +..+..+++.+.|
T Consensus 138 aLLK~LE--epp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G 212 (563)
T PRK06647 138 ALLKTIE--EPPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG 212 (563)
T ss_pred HHHHhhc--cCCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7777776 345667777777778889999988 754 788999999999999988886655432 2336667777766
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 637 WTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 637 fSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+.+++.+++..+...+ ...|+.+++..++
T Consensus 213 -dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 213 -SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred -CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8889999988776543 2457777766654
No 127
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=8.3e-12 Score=143.18 Aligned_cols=213 Identities=19% Similarity=0.271 Sum_probs=140.5
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEE----------EE
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY----------QM 489 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi----------~v 489 (938)
.+.+|++|+|++.+++.|+..+.. .+.++.+||+||||+|||++|+++|+.+.+.-. .-
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 456899999999999988777652 245678999999999999999999998866310 00
Q ss_pred eCch------hHH-------HHhh---hhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhh
Q 002307 490 AGSE------FVE-------VLVG---VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (938)
Q Consensus 490 s~se------l~~-------~~vG---~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~ 549 (938)
.|.. +.. .+.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------------ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------------ 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------------
Confidence 1110 000 0011 123456665555421 1235999999998742
Q ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHH
Q 002307 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLS 628 (938)
Q Consensus 550 ~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~ 628 (938)
...+.|+..++ +.+...++|.+|+.+..+.+++.+ |.. .+++.+++.++-...++..++..+.. .+..+.
T Consensus 142 ----~~~~~LLk~LE--ep~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~ 212 (397)
T PRK14955 142 ----AAFNAFLKTLE--EPPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQ 212 (397)
T ss_pred ----HHHHHHHHHHh--cCCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 12445666665 233455555566667788888876 653 78899999998888888887655432 222366
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHH-hCCcccchhhHHHHHH
Q 002307 629 SYAKNLPGWTGARLAQLVQEAALVAVR-KGHESILSSDMDDAVD 671 (938)
Q Consensus 629 ~LA~~t~GfSgaDL~~Lv~eA~l~A~r-~~~~~It~edl~~Ai~ 671 (938)
.++..+.| +.+.+.+.++.+...+.. .....|+.+++.+.+.
T Consensus 213 ~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 213 LIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLN 255 (397)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHC
Confidence 67777766 788888888877766532 2345788888877763
No 128
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.37 E-value=1.8e-11 Score=134.62 Aligned_cols=203 Identities=21% Similarity=0.249 Sum_probs=131.8
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC-----CCEEEEeCc
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMAGS 492 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg-----~pfi~vs~s 492 (938)
.-.+.+|+|++|.+++++.|...+.. . . ..+++|+||||||||++++++++++. .+++.++++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE---K--------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC---C--------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 33457899999999999888877642 1 1 12589999999999999999999873 345555544
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHh------CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC
Q 002307 493 EFVEVLVGVGSARIRDLFKRAKV------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 566 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar~------~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~ 566 (938)
+... ...++..+..... ..+.+|+|||+|.+... . .+.|+..++..
T Consensus 78 ~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------------~---~~~L~~~le~~ 129 (319)
T PRK00440 78 DERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------------A---QQALRRTMEMY 129 (319)
T ss_pred cccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------------H---HHHHHHHHhcC
Confidence 3211 1112222222211 23469999999987422 1 12333444432
Q ss_pred cCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHH
Q 002307 567 DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 567 ~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~L 645 (938)
. ....+|.++|.+..+.+++.+ |+. .+++++++.++...+++.++.+.+.. .+..+..++..+.| +.+.+.+.
T Consensus 130 ~--~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~ 203 (319)
T PRK00440 130 S--QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINA 203 (319)
T ss_pred C--CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 2 234455567777777777777 665 58999999999999999998766543 23346777877755 66666666
Q ss_pred HHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 646 VQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 646 v~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
++.+... ...|+.+++..++.
T Consensus 204 l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 204 LQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHc-----CCCCCHHHHHHHhC
Confidence 6554432 35789999887764
No 129
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.36 E-value=2.5e-11 Score=138.30 Aligned_cols=225 Identities=20% Similarity=0.238 Sum_probs=158.0
Q ss_pred CCCCcccCccc-CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeC
Q 002307 418 GSTGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 491 (938)
Q Consensus 418 ~~~~v~F~dVv-G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~ 491 (938)
-.+.-+|++.+ |-... ....-...+...|. ..-..++||||+|+|||+|++|+++++ +..+++++.
T Consensus 80 l~~~ytFdnFv~g~~N~-~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 80 LNPKYTFDNFVVGPSNR-LAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCCCchhheeeCCchH-HHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 45778899966 44322 22212222222221 134579999999999999999999876 345889999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCe
Q 002307 492 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (938)
Q Consensus 492 sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ 571 (938)
..|...++......-.+-|+.-. +-.+|+||||+.+.++.. ...+.-.++|.+.. ..+
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~-------------~qeefFh~FN~l~~-------~~k 209 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER-------------TQEEFFHTFNALLE-------NGK 209 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh-------------HHHHHHHHHHHHHh-------cCC
Confidence 99888877665544445566555 456899999999986532 23445556666543 233
Q ss_pred EEEEEecCCCCc---CCccccCCCccce--EEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCCCCHHHHHHH
Q 002307 572 VIFLAATNRRDL---LDPALLRPGRFDR--KIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 572 ViVIAATN~pd~---LDpALlRpGRFdr--~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~GfSgaDL~~L 645 (938)
-+|+.+...|.. +.+.|.+ ||.. .+.+.+||.+.|..||+..+...++.-+.+ +.-+|..... +.++|+.+
T Consensus 210 qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLega 286 (408)
T COG0593 210 QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGA 286 (408)
T ss_pred EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHH
Confidence 566656555664 4578888 8765 678889999999999999887766554333 5556766655 89999999
Q ss_pred HHHHHHHHHHhCCcccchhhHHHHHHhhccC
Q 002307 646 VQEAALVAVRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 646 v~eA~l~A~r~~~~~It~edl~~Ai~rv~~g 676 (938)
++.....|...++ .||.+.+.+++......
T Consensus 287 L~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 287 LNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 9999988876664 89999999999887653
No 130
>PRK06620 hypothetical protein; Validated
Probab=99.36 E-value=1.6e-11 Score=129.72 Aligned_cols=196 Identities=17% Similarity=0.249 Sum_probs=125.1
Q ss_pred CCCCcccCccc-Cc--HHHHHHHHHHHHHhcCchhhhccCCCC-CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 418 GSTGVKFSDVA-GI--DEAVEELQELVRYLKNPELFDKMGIKP-PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 418 ~~~~v~F~dVv-G~--deak~eL~eiV~~Lk~pe~~~~lG~~~-p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
..+..+|++.+ |- +.+...++++.+ .+ +..+ .+.++||||||||||+|++++++..+..++. ...
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHH---cc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 34667899966 44 234444444332 11 2222 2579999999999999999999988764432 111
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
.. ...+ ....+|+|||||.+. ..+.-.++|.+. .....+
T Consensus 78 ~~-----------~~~~-----~~~d~lliDdi~~~~------------------~~~lf~l~N~~~-------e~g~~i 116 (214)
T PRK06620 78 FN-----------EEIL-----EKYNAFIIEDIENWQ------------------EPALLHIFNIIN-------EKQKYL 116 (214)
T ss_pred hc-----------hhHH-----hcCCEEEEeccccch------------------HHHHHHHHHHHH-------hcCCEE
Confidence 10 0111 123589999999531 112333344332 234467
Q ss_pred EEEecCCCCc--CCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCCCCHHHHHHHHHH
Q 002307 574 FLAATNRRDL--LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 574 VIAATN~pd~--LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~GfSgaDL~~Lv~e 648 (938)
+|+++..|.. + ++|++ |+. ..+.+..|+.+.+..+++.++...++.-+ .-++-++....| +.+.+.++++.
T Consensus 117 lits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 117 LLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred EEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 7777766553 5 77877 875 36899999999999999988876544322 236677888877 89999999998
Q ss_pred HHHHHHHhCCcccchhhHHHHH
Q 002307 649 AALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 649 A~l~A~r~~~~~It~edl~~Ai 670 (938)
....+.. .+..||...+.+++
T Consensus 193 l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 193 INYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHH-cCCCCCHHHHHHHh
Confidence 6544443 33568888877765
No 131
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.36 E-value=4.1e-12 Score=146.70 Aligned_cols=251 Identities=25% Similarity=0.336 Sum_probs=154.3
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhH
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 495 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~ 495 (938)
...-+|++|+|.+.+..++.+.+.... +.+..|||.|.+||||.++|++|.+.. +.||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIA----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhc----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 456789999999999888888776543 345589999999999999999998755 7899999997665
Q ss_pred HHHh-----h--------hhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH
Q 002307 496 EVLV-----G--------VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (938)
Q Consensus 496 ~~~v-----G--------~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e 562 (938)
+.+. | .....-..+|+.|... .||||||..+.. ..+.-+.+.|++
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl-------------------~LQaKLLRVLQE 366 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPL-------------------PLQAKLLRVLQE 366 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCH-------------------HHHHHHHHHHhh
Confidence 5422 2 1111134566665543 799999988642 344555566665
Q ss_pred hcCC------cCCCeEEEEEecCCCCcCCccccCCCccce-------EEeccCCChhhHHH----HHHHHhcc----ccc
Q 002307 563 LDGF------DTGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASK----VKM 621 (938)
Q Consensus 563 LDg~------~~~~~ViVIAATN~pd~LDpALlRpGRFdr-------~I~V~lPd~eeR~e----ILr~~l~~----~~l 621 (938)
-+-. ...-+|.||||||+. +-.++.. |+|.. ++.+..|+..+|.+ +.++++.+ .+.
T Consensus 367 kei~rvG~t~~~~vDVRIIAATN~n--L~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~ 443 (560)
T COG3829 367 KEIERVGGTKPIPVDVRIIAATNRN--LEKMIAE-GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGR 443 (560)
T ss_pred ceEEecCCCCceeeEEEEEeccCcC--HHHHHhc-CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCC
Confidence 3211 223469999999972 2222222 44432 56677898888866 22333332 221
Q ss_pred C-CccC---HHHH-HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHH-HHHHhhccCCCccCcccccccchhhhHH
Q 002307 622 S-DSVD---LSSY-AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD-DAVDRLTVGPKRRGIELGNQGQSRRAAT 695 (938)
Q Consensus 622 ~-~dvd---L~~L-A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~-~Ai~rv~~g~~~~~~~l~~~e~~~iA~H 695 (938)
. ..+. +..+ .-.++| +.++|+|++.++...+. ....|+.+|+. .++......+... ...+...-..+..
T Consensus 444 ~v~~ls~~a~~~L~~y~WPG-NVRELeNviER~v~~~~--~~~~I~~~~lp~~~l~~k~~~~~~~--~~~~~~~l~~~~e 518 (560)
T COG3829 444 NVKGLSPDALALLLRYDWPG-NVRELENVIERAVNLVE--SDGLIDADDLPAFALEEKEPRPETT--KQIEVGSLKEALE 518 (560)
T ss_pred CcccCCHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccC--CcceeehhhcchhhhcccccCcCcc--cCcccccHHHHHH
Confidence 1 1122 2223 233677 88999999999997552 44458888877 5554432222111 1112222334555
Q ss_pred HHHHHHHHhhhhcc
Q 002307 696 EVGVAMISHLLRRY 709 (938)
Q Consensus 696 EaGhAvv~~lL~~~ 709 (938)
+.-..++..+|..+
T Consensus 519 ~~Ek~~I~~aL~~~ 532 (560)
T COG3829 519 EYEKHLIREALERH 532 (560)
T ss_pred HHHHHHHHHHHHHh
Confidence 55566666666544
No 132
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.35 E-value=1.4e-11 Score=140.45 Aligned_cols=88 Identities=31% Similarity=0.477 Sum_probs=64.1
Q ss_pred cccCcHHHHHHHHHHHHH-hcCchhhhccC-CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-HHhh-h
Q 002307 426 DVAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG-V 501 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~-Lk~pe~~~~lG-~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-~~vG-~ 501 (938)
.|+|++++|+.+...+.. ++......... -..|+++||+||||||||++|+++|..++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 389999999999877643 22221111111 113689999999999999999999999999999999998886 5777 3
Q ss_pred hhHHHHHHHHHH
Q 002307 502 GSARIRDLFKRA 513 (938)
Q Consensus 502 ~~~~vr~lF~~A 513 (938)
.+..++++|..|
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 345555555555
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.34 E-value=1.1e-11 Score=134.44 Aligned_cols=194 Identities=23% Similarity=0.287 Sum_probs=130.2
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC------EEE
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------FYQ 488 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p------fi~ 488 (938)
..++-.+.+|+|++|++.+++.|...+.. + ...+.|+|||||||||+.|+++|+++..+ +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 44555778999999999999999887654 1 12368999999999999999999998763 233
Q ss_pred EeCchhHHHHhhhhhHHHHHHHHHHH------hCCC----eEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHH
Q 002307 489 MAGSEFVEVLVGVGSARIRDLFKRAK------VNKP----SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQ 558 (938)
Q Consensus 489 vs~sel~~~~vG~~~~~vr~lF~~Ar------~~~P----~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Lnq 558 (938)
.+.++..+.-+. ..++. -|+... ...| .|++|||.|.+..+ +.+.
T Consensus 94 lnaSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd----------------------aq~a 148 (346)
T KOG0989|consen 94 LNASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD----------------------AQAA 148 (346)
T ss_pred hcccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH----------------------HHHH
Confidence 344443322111 11111 122221 1122 49999999998643 2345
Q ss_pred HHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCCC
Q 002307 559 LLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGW 637 (938)
Q Consensus 559 LL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~Gf 637 (938)
|...|+.+. ..+.+|..||..+.|...+.+ |. ..+.|+..+.+.....|+..+.+.++.-+.+ +..++..+.|
T Consensus 149 Lrr~mE~~s--~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G- 222 (346)
T KOG0989|consen 149 LRRTMEDFS--RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG- 222 (346)
T ss_pred HHHHHhccc--cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-
Confidence 555666433 456667779999999999998 75 4667877777777888888887766654433 6777877766
Q ss_pred CHHHHHHHHHHHHH
Q 002307 638 TGARLAQLVQEAAL 651 (938)
Q Consensus 638 SgaDL~~Lv~eA~l 651 (938)
+-++....++.+..
T Consensus 223 dLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 223 DLRRAITTLQSLSL 236 (346)
T ss_pred cHHHHHHHHHHhhc
Confidence 56666666665554
No 134
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.4e-11 Score=133.92 Aligned_cols=217 Identities=19% Similarity=0.309 Sum_probs=152.7
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC-----EEEEeCchhHHHH-
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-----FYQMAGSEFVEVL- 498 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-----fi~vs~sel~~~~- 498 (938)
+.+.+.++.++.+..++...-+ ...|.+++++||||||||.+++.+++++.-+ +++++|....+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 4488999999999887664221 2345579999999999999999999987443 8999996544321
Q ss_pred --------------hhhhhHH-HHHHHHHHH-hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH
Q 002307 499 --------------VGVGSAR-IRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (938)
Q Consensus 499 --------------vG~~~~~-vr~lF~~Ar-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e 562 (938)
.|..... ...+++... ....-||+|||+|.|..+.+ ..+..|+..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------------------~~LY~L~r~ 149 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------------------EVLYSLLRA 149 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------------------hHHHHHHhh
Confidence 1111112 222222222 24566999999999975521 456666666
Q ss_pred hcCCcCCCeEEEEEecCCC---CcCCccccCCCcc-ceEEeccCCChhhHHHHHHHHhcccccCCcc--C----HHHHHh
Q 002307 563 LDGFDTGKGVIFLAATNRR---DLLDPALLRPGRF-DRKIRIRAPNAKGRTEILKIHASKVKMSDSV--D----LSSYAK 632 (938)
Q Consensus 563 LDg~~~~~~ViVIAATN~p---d~LDpALlRpGRF-dr~I~V~lPd~eeR~eILr~~l~~~~l~~dv--d----L~~LA~ 632 (938)
.+.. ..+|.+|+.+|.. +.+|+.+.+ +| ...|.|++++.+|..+|++......-..... + ...++.
T Consensus 150 ~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a 225 (366)
T COG1474 150 PGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA 225 (366)
T ss_pred cccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 5433 5678999999985 478888887 44 3468999999999999999988753222111 1 233344
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 633 NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 633 ~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
...| ..+-.-.+|+.|+..|.+++...++.+++..|....
T Consensus 226 ~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 226 AESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 4555 677777899999999999999999999999995544
No 135
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.33 E-value=4.5e-11 Score=146.94 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=131.8
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH-----Hh
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-----LV 499 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~-----~v 499 (938)
+.|+|++++++.+.+.+...+..-. . ..+|...+||+||||||||++|+++|..++.+++.++++++.+. +.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~--~-~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG--N-PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC--C-CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 4588999999998887765321100 0 01233358999999999999999999999999999999987652 33
Q ss_pred hhhh-----HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC--------
Q 002307 500 GVGS-----ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------- 566 (938)
Q Consensus 500 G~~~-----~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~-------- 566 (938)
|... .....+....+.+..+||+|||||.+.+. ..+.|++.+|.-
T Consensus 531 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~----------------------~~~~Ll~~ld~g~~~d~~g~ 588 (731)
T TIGR02639 531 GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPD----------------------IYNILLQVMDYATLTDNNGR 588 (731)
T ss_pred cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHH----------------------HHHHHHHhhccCeeecCCCc
Confidence 3211 11223444445566789999999986432 334455555421
Q ss_pred -cCCCeEEEEEecCCCC-------------------------cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccc
Q 002307 567 -DTGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK 620 (938)
Q Consensus 567 -~~~~~ViVIAATN~pd-------------------------~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~ 620 (938)
..-.+++||+|||... .+.|.++. |+|.+|.|.+.+.++..+|++..+.+..
T Consensus 589 ~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~ 666 (731)
T TIGR02639 589 KADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELS 666 (731)
T ss_pred ccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 0124578899998631 24556665 9999999999999999999988876421
Q ss_pred -------cCCcc---CHHHHHhh--CCCCCHHHHHHHHHHHHHHH
Q 002307 621 -------MSDSV---DLSSYAKN--LPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 621 -------l~~dv---dL~~LA~~--t~GfSgaDL~~Lv~eA~l~A 653 (938)
+.-.+ .++.++.. .+.+..+.|+.+++.-....
T Consensus 667 ~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 667 KQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKP 711 (731)
T ss_pred HHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHH
Confidence 11111 13445553 33455677777776655443
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=4.5e-11 Score=143.89 Aligned_cols=205 Identities=22% Similarity=0.282 Sum_probs=138.3
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE----Ee---Cc
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ----MA---GS 492 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~----vs---~s 492 (938)
...+|++|+|++.+++.|...+..- +.+.++||+||+|+|||++|+++|+.+.+.... -. |.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 4578999999999999998877531 234579999999999999999999998663110 01 11
Q ss_pred hhH-------------HHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHH
Q 002307 493 EFV-------------EVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (938)
Q Consensus 493 el~-------------~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~ 555 (938)
... +.....+...+|+++..+... ...|++|||+|.+.. ..
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~----------------------~a 137 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST----------------------AA 137 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH----------------------HH
Confidence 000 001123455788888776432 335999999998742 23
Q ss_pred HHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhC
Q 002307 556 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNL 634 (938)
Q Consensus 556 LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t 634 (938)
.+.||..|+ .....+++|.+|+.++.+.+.+++ |+ ..+.|..++.++....+...+.+.+..- ...+..++..+
T Consensus 138 ~naLLK~LE--ePp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 138 FNALLKTLE--EPPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred HHHHHHHHh--cCCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 567777777 344567777777888888888887 65 5788888888888877777776544332 22366777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHH
Q 002307 635 PGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (938)
Q Consensus 635 ~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~ 668 (938)
.| +.+++.++++...... ..|+.+++.+
T Consensus 213 ~G-~lr~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 213 QG-GLRDAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred CC-CHHHHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 66 6677777777644331 2455555443
No 137
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.32 E-value=7.9e-11 Score=141.97 Aligned_cols=218 Identities=22% Similarity=0.310 Sum_probs=133.0
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEE
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQM 489 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~v 489 (938)
.+-+|++++|++.+++.+...+ .. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~i---a~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKV---AS---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHH---hc---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 3568999999999988765443 11 234579999999999999999998755 4679999
Q ss_pred eCchhH-------HHHhhhhhHH----HHHHHHH----------HHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhh
Q 002307 490 AGSEFV-------EVLVGVGSAR----IRDLFKR----------AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (938)
Q Consensus 490 s~sel~-------~~~vG~~~~~----vr~lF~~----------Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~ 548 (938)
+|..+. ..+.|..... .+..++. .......+|||||++.+....
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~--------------- 281 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL--------------- 281 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH---------------
Confidence 987641 1122211110 1111110 011234699999999875432
Q ss_pred hHHHHHHHHHHHHHhc-----------------------CCcCCCeEEEEEe-cCCCCcCCccccCCCccceEEeccCCC
Q 002307 549 TQERETTLNQLLIELD-----------------------GFDTGKGVIFLAA-TNRRDLLDPALLRPGRFDRKIRIRAPN 604 (938)
Q Consensus 549 ~~e~~~~LnqLL~eLD-----------------------g~~~~~~ViVIAA-TN~pd~LDpALlRpGRFdr~I~V~lPd 604 (938)
+..+..++..-. .......+++|++ |+.++.++++|++ ||. .+.+++++
T Consensus 282 ----Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls 354 (615)
T TIGR02903 282 ----QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLT 354 (615)
T ss_pred ----HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCC
Confidence 222222332210 0011234555554 5568889999987 886 56888899
Q ss_pred hhhHHHHHHHHhcccccCCccC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHh--------CCcccchhhHHHHHHhh
Q 002307 605 AKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRK--------GHESILSSDMDDAVDRL 673 (938)
Q Consensus 605 ~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~--------~~~~It~edl~~Ai~rv 673 (938)
.++...|++..+......-+.+ +..+++.+. .++..-+++..+...+..+ ....|+.+|+.+++..-
T Consensus 355 ~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999999999988654321112 344444432 4566556666665444222 22368899999888654
No 138
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=4.6e-11 Score=143.34 Aligned_cols=212 Identities=18% Similarity=0.266 Sum_probs=140.6
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE----------E
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ----------M 489 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~----------v 489 (938)
.+.+|++|+|++.+++.|++.+.. .+.++++||+||+|||||++|+++|+.+.+.-.. -
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 456899999999999998886542 2456789999999999999999999998763100 0
Q ss_pred eCch---hHHH----------Hhh---hhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhh
Q 002307 490 AGSE---FVEV----------LVG---VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (938)
Q Consensus 490 s~se---l~~~----------~vG---~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~ 549 (938)
.|.. .... +.+ .+...++.+.+.+.. ....|++|||+|.+..
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------------ 141 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------------ 141 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------------
Confidence 1110 0000 011 123456666555522 2335999999998742
Q ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHH
Q 002307 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLS 628 (938)
Q Consensus 550 ~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~ 628 (938)
...+.||..|+. ....+++|.+|+.++.+.+.+.+ |. ..+++..++.++....++..+...+.. ++..+.
T Consensus 142 ----~a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 142 ----AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred ----HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 225567777763 33445555556667888888887 53 689999999999888888877654432 233466
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHH-hCCcccchhhHHHHH
Q 002307 629 SYAKNLPGWTGARLAQLVQEAALVAVR-KGHESILSSDMDDAV 670 (938)
Q Consensus 629 ~LA~~t~GfSgaDL~~Lv~eA~l~A~r-~~~~~It~edl~~Ai 670 (938)
.++..+.| +.+++.+.++.....+.. .....|+.+++.+.+
T Consensus 213 ~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 213 LIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 77777766 778888887776655421 224568887776665
No 139
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.32 E-value=2.1e-11 Score=142.46 Aligned_cols=195 Identities=23% Similarity=0.337 Sum_probs=149.5
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCE-------EEE-eC
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------YQM-AG 491 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pf-------i~v-s~ 491 (938)
.+.+|+|++|++.+...|.+.+..= +..++.|+.||.|||||++||.+|..+++.- ..+ +|
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 3567999999999999999988753 3345789999999999999999999886642 111 11
Q ss_pred ch--------hHH--HHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 492 SE--------FVE--VLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 492 se--------l~~--~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
.+ +++ .....+-..+|.+.+.+.. ....|.+|||+|.|. .+..|
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS----------------------~~afN 137 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS----------------------KQAFN 137 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh----------------------HHHHH
Confidence 11 111 1122355668888887642 234599999999874 34578
Q ss_pred HHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCC
Q 002307 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPG 636 (938)
Q Consensus 558 qLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~G 636 (938)
.||..++ +++..|++|.||..++.+++.+++ |. .++.+..-+.++....|...+.+..+..+.+ +..+|+...|
T Consensus 138 ALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 138 ALLKTLE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred HHhcccc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 8998887 677899999999999999999998 64 5777888999999999999998877764444 6778888888
Q ss_pred CCHHHHHHHHHHHHHHH
Q 002307 637 WTGARLAQLVQEAALVA 653 (938)
Q Consensus 637 fSgaDL~~Lv~eA~l~A 653 (938)
|.+|..+++.+|....
T Consensus 213 -s~RDalslLDq~i~~~ 228 (515)
T COG2812 213 -SLRDALSLLDQAIAFG 228 (515)
T ss_pred -ChhhHHHHHHHHHHcc
Confidence 8999999999988664
No 140
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.32 E-value=1.1e-11 Score=139.39 Aligned_cols=225 Identities=19% Similarity=0.246 Sum_probs=141.0
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCCEEEE--
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQM-- 489 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------g~pfi~v-- 489 (938)
.+...|++|+|++++|..|... +.+| ...|+||.||+|||||++||+++.-+ +.||...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~---~~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILN---VIDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHh---ccCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3567899999999998888543 2233 22589999999999999999997755 2344300
Q ss_pred ----eCchhHHHH-------------------hhhhhHHH------HHHHHHHH---------hCCCeEEEEcCcchhhh
Q 002307 490 ----AGSEFVEVL-------------------VGVGSARI------RDLFKRAK---------VNKPSVIFIDEIDALAT 531 (938)
Q Consensus 490 ----s~sel~~~~-------------------vG~~~~~v------r~lF~~Ar---------~~~P~ILfIDEIDaL~~ 531 (938)
.+++..... .|..+.++ ...|.... .....+||||||+.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 011111100 11112211 11111111 11235999999999764
Q ss_pred hhcCccCCcchhhhhhhhHHHHHHHHHHHHHh------cCC--cCCCeEEEEEecCCCC-cCCccccCCCccceEEeccC
Q 002307 532 RRQGIFKDTTDHLYNAATQERETTLNQLLIEL------DGF--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRA 602 (938)
Q Consensus 532 ~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL------Dg~--~~~~~ViVIAATN~pd-~LDpALlRpGRFdr~I~V~l 602 (938)
.. +..+.+.+.+- +|. ..+.++++|++.|..+ .+.++++. ||...+.+..
T Consensus 159 ~~-------------------Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~ 217 (350)
T CHL00081 159 HL-------------------VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRT 217 (350)
T ss_pred HH-------------------HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCC
Confidence 42 22233333221 121 1235688898888755 68999998 9999999999
Q ss_pred CC-hhhHHHHHHHHhccc--ccC-----------------------CccC--------HHHHHhhCCCCCHHHHHHHHHH
Q 002307 603 PN-AKGRTEILKIHASKV--KMS-----------------------DSVD--------LSSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 603 Pd-~eeR~eILr~~l~~~--~l~-----------------------~dvd--------L~~LA~~t~GfSgaDL~~Lv~e 648 (938)
|+ .+.+.+|++...... +.. ..+. +.+++..+.--+++--..+++.
T Consensus 218 ~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~ra 297 (350)
T CHL00081 218 VKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRA 297 (350)
T ss_pred CCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHH
Confidence 97 599999998753211 000 0010 2233444433457777778899
Q ss_pred HHHHHHHhCCcccchhhHHHHHHhhccC
Q 002307 649 AALVAVRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 649 A~l~A~r~~~~~It~edl~~Ai~rv~~g 676 (938)
|...|+-++++.++.+|+..+..-++..
T Consensus 298 ArA~Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 298 AKALAAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998887654
No 141
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=7.9e-11 Score=141.35 Aligned_cols=208 Identities=21% Similarity=0.300 Sum_probs=137.4
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE-----EeCchh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ-----MAGSEF 494 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~-----vs~sel 494 (938)
.+.+|+||+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.... ++..++
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 456899999999999999877653 1345678999999999999999999987642210 000000
Q ss_pred HHHH--------------hhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHH
Q 002307 495 VEVL--------------VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 556 (938)
Q Consensus 495 ~~~~--------------vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~L 556 (938)
...+ ...+...++++.+.+.. ....||+|||+|.+.. ..+
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----------------------~a~ 137 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----------------------AAF 137 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----------------------HHH
Confidence 0000 01123345555544432 2345999999998642 235
Q ss_pred HHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhCC
Q 002307 557 NQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLP 635 (938)
Q Consensus 557 nqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t~ 635 (938)
+.||..++. ....+++|.+|+..+.+.+.+.+ |+ ..+.|..++..+...+++..+...++.- +..+..++..+.
T Consensus 138 naLLk~LEe--pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 138 NALLKTLEE--PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred HHHHHHHhc--CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 667777764 23455666666777778888876 65 4688999999999998888877655432 223667777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 636 GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 636 GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
| +.+++.++++..... +...|+.+++...+
T Consensus 213 G-dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 213 G-SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 6 888888888865442 33568887776543
No 142
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.29 E-value=9.8e-11 Score=129.13 Aligned_cols=99 Identities=24% Similarity=0.248 Sum_probs=77.9
Q ss_pred EEEEEecCC------------CCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCCCC
Q 002307 572 VIFLAATNR------------RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWT 638 (938)
Q Consensus 572 ViVIAATN~------------pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~GfS 638 (938)
-++|.|||+ |..++..|++ |+ ..|...+.+.++.++|++..+....+.-+ ..++.|+....--|
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etS 397 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETS 397 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhh
Confidence 366668886 5567777776 64 47778889999999999999876655422 33677787776678
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 639 GARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 639 gaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
-+-.-+|+.-|...|.++++..|..+|+++|-.-.
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 88888999999999999999999999999987654
No 143
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.29 E-value=1.3e-11 Score=137.31 Aligned_cols=204 Identities=15% Similarity=0.128 Sum_probs=130.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH--HhhhhhHH----------HHHHHHHHHhCCCeEEEEcC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGVGSAR----------IRDLFKRAKVNKPSVIFIDE 525 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~--~vG~~~~~----------vr~lF~~Ar~~~P~ILfIDE 525 (938)
.++|||.||||||||++++++|.+++.|++.++++..... ++|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4579999999999999999999999999999998765544 44432111 1123444443 568899999
Q ss_pred cchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH-----hc----CCcCCCeEEEEEecCCCC------------cC
Q 002307 526 IDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE-----LD----GFDTGKGVIFLAATNRRD------------LL 584 (938)
Q Consensus 526 IDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e-----LD----g~~~~~~ViVIAATN~pd------------~L 584 (938)
||...++ ....++.+|+. ++ .+.....+.||||+|..+ .+
T Consensus 143 in~a~p~-------------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l 203 (327)
T TIGR01650 143 YDAGRPD-------------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQI 203 (327)
T ss_pred hhccCHH-------------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecC
Confidence 9985433 33455666652 11 112345789999999854 46
Q ss_pred CccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc----CHHHHHhh----------CCCCCHHHHHHHHHHHH
Q 002307 585 DPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV----DLSSYAKN----------LPGWTGARLAQLVQEAA 650 (938)
Q Consensus 585 DpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv----dL~~LA~~----------t~GfSgaDL~~Lv~eA~ 650 (938)
+.|++. ||-.++.++.|+.++-.+|+........-..+. .+-++|.. ..|.|++.+..+.+.+.
T Consensus 204 ~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~ 281 (327)
T TIGR01650 204 NQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAE 281 (327)
T ss_pred CHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHH
Confidence 889998 999889999999999999998765432200000 02223322 23457777776665544
Q ss_pred HHHHHhCCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHH
Q 002307 651 LVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAM 701 (938)
Q Consensus 651 l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAv 701 (938)
.. + .++..|++....... ++..|.++||.-..+
T Consensus 282 ~f----~------~~~~~a~~~~~~n~~--------~~~er~~~~e~~q~~ 314 (327)
T TIGR01650 282 IF----D------HDIALAFRLTFLNKC--------DELERPTVAEFFQRA 314 (327)
T ss_pred hh----C------ccHHHHHHHHHHhcC--------CHHHHHHHHHHHHHH
Confidence 33 1 267777776654221 233455667754433
No 144
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.29 E-value=3.3e-11 Score=135.38 Aligned_cols=218 Identities=22% Similarity=0.279 Sum_probs=135.9
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCCEE--------
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFY-------- 487 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------g~pfi-------- 487 (938)
.|+.|+|++++|..|.-. +-+| ...+++|.|+||+|||++++++++-. ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~---~~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLN---VIDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHH---hcCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 488999999998877332 1122 13579999999999999999999865 33332
Q ss_pred -EEeCch---h-------------HHHHhhhhhHHH------H------------HHHHHHHhCCCeEEEEcCcchhhhh
Q 002307 488 -QMAGSE---F-------------VEVLVGVGSARI------R------------DLFKRAKVNKPSVIFIDEIDALATR 532 (938)
Q Consensus 488 -~vs~se---l-------------~~~~vG~~~~~v------r------------~lF~~Ar~~~P~ILfIDEIDaL~~~ 532 (938)
..+|.. + .+.-.|..+.++ . .++.+ ....+||||||+.+..+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCCHH
Confidence 011111 0 000001111111 1 11221 22359999999997543
Q ss_pred hcCccCCcchhhhhhhhHHHHHHHHHHHHHh------cCC--cCCCeEEEEEecCCCC-cCCccccCCCccceEEeccCC
Q 002307 533 RQGIFKDTTDHLYNAATQERETTLNQLLIEL------DGF--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAP 603 (938)
Q Consensus 533 r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL------Dg~--~~~~~ViVIAATN~pd-~LDpALlRpGRFdr~I~V~lP 603 (938)
.+..+.+.+.+- +|. ..+.++++|+++|..+ .++++++. ||...+.++.|
T Consensus 147 -------------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p 205 (337)
T TIGR02030 147 -------------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTV 205 (337)
T ss_pred -------------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCC
Confidence 222233333221 111 1234688898888655 68999999 99999999998
Q ss_pred Ch-hhHHHHHHHHhccc----c----c-----------------CCccC--------HHHHHhhCCCCCHHHHHHHHHHH
Q 002307 604 NA-KGRTEILKIHASKV----K----M-----------------SDSVD--------LSSYAKNLPGWTGARLAQLVQEA 649 (938)
Q Consensus 604 d~-eeR~eILr~~l~~~----~----l-----------------~~dvd--------L~~LA~~t~GfSgaDL~~Lv~eA 649 (938)
+. ++|.+|++...... . . ..++. +.+++..+..-+.+.-..+++.|
T Consensus 206 ~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raA 285 (337)
T TIGR02030 206 RDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAA 285 (337)
T ss_pred CCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 76 88899998743210 0 0 01111 23334444433567788888999
Q ss_pred HHHHHHhCCcccchhhHHHHHHhhccC
Q 002307 650 ALVAVRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 650 ~l~A~r~~~~~It~edl~~Ai~rv~~g 676 (938)
...|..++++.++.+|+..+..-++..
T Consensus 286 rA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 286 KALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998877653
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.28 E-value=7.7e-11 Score=111.78 Aligned_cols=124 Identities=43% Similarity=0.615 Sum_probs=82.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhhhHH---HHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSAR---IRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~~~~~---vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
.+++++|+||||||||++++.+++.+ +.+++.+++.+............ ....+..+....+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34689999999999999999999998 89999999887665433322211 1222334455678899999999863
Q ss_pred hhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC-cCCCeEEEEEecCCCC--cCCccccCCCccceEEecc
Q 002307 531 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-DTGKGVIFLAATNRRD--LLDPALLRPGRFDRKIRIR 601 (938)
Q Consensus 531 ~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~-~~~~~ViVIAATN~pd--~LDpALlRpGRFdr~I~V~ 601 (938)
.. ....+..++..+... ....++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 98 ~~-------------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG-------------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH-------------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 21 111222233222110 1246788888998876 67777776 898777765
No 146
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-10 Score=133.58 Aligned_cols=201 Identities=25% Similarity=0.335 Sum_probs=128.6
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~ 496 (938)
+...+..|+|.+.++..+.+.|+.....+ ..|||.|.+||||..+||+|.... +.||+.+||+.+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~Sd----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKSD----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcCC----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 46778999999999999999988765543 389999999999999999998755 78999999987665
Q ss_pred HHhhh-hhHHHHHHHHHHHh--------CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh--cC
Q 002307 497 VLVGV-GSARIRDLFKRAKV--------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL--DG 565 (938)
Q Consensus 497 ~~vG~-~~~~vr~lF~~Ar~--------~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL--Dg 565 (938)
..... --...+..|.-|.. .....||||||..+... .+..+-..|++- +.
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~-------------------lQaKLLRvLQegEieR 348 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLA-------------------LQAKLLRVLQEGEIER 348 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHH-------------------HHHHHHHHHhhcceee
Confidence 43211 00112222322211 12348999999887533 344455555542 22
Q ss_pred CcCC----CeEEEEEecCCCCcCCccccCCCccce-------EEeccCCChhhHHH----HHHHHhccc----cc-CCcc
Q 002307 566 FDTG----KGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KM-SDSV 625 (938)
Q Consensus 566 ~~~~----~~ViVIAATN~pd~LDpALlRpGRFdr-------~I~V~lPd~eeR~e----ILr~~l~~~----~l-~~dv 625 (938)
...+ -+|.||||||+ +|..+... |+|.. ++.+..|+..+|.+ +.++++++. +. ...+
T Consensus 349 vG~~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~l 425 (550)
T COG3604 349 VGGDRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSL 425 (550)
T ss_pred cCCCceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCccccc
Confidence 2222 34899999997 34334433 55542 44556788888755 223444332 22 1112
Q ss_pred C---HHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 002307 626 D---LSSYAKN-LPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 626 d---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A 653 (938)
+ ++.+... .+| +.++|+|++++|+..|
T Consensus 426 s~~Al~~L~~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 426 SAEALELLSSYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred CHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHh
Confidence 2 3333333 445 7899999999999988
No 147
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.22 E-value=9.7e-11 Score=141.74 Aligned_cols=214 Identities=21% Similarity=0.309 Sum_probs=136.9
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc--------------------
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------------------- 482 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------------------- 482 (938)
-|.+|+|++.++..|.-. +.+|. ..+|||.|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~---av~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLN---AVDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHH---hhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 488999999998766432 22221 2479999999999999999999876
Q ss_pred ---------------CCCEEEEeCchhHHHHhhhhh--HHH--------HHHHHHHHhCCCeEEEEcCcchhhhhhcCcc
Q 002307 483 ---------------GVPFYQMAGSEFVEVLVGVGS--ARI--------RDLFKRAKVNKPSVIFIDEIDALATRRQGIF 537 (938)
Q Consensus 483 ---------------g~pfi~vs~sel~~~~vG~~~--~~v--------r~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~ 537 (938)
..||+.+.++.....++|.-. ..+ ..++..| ...|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence 357777766544444444210 000 1112221 2349999999997533
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHhcC---------C--cCCCeEEEEEecCCCC-cCCccccCCCccceEEeccCCC-
Q 002307 538 KDTTDHLYNAATQERETTLNQLLIELDG---------F--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAPN- 604 (938)
Q Consensus 538 ~~~~~~~~~~~~~e~~~~LnqLL~eLDg---------~--~~~~~ViVIAATN~pd-~LDpALlRpGRFdr~I~V~lPd- 604 (938)
+.+.|+..|+. . ....++++|+|+|..+ .+.++|+. ||+.+|.++.|.
T Consensus 142 -----------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~ 202 (633)
T TIGR02442 142 -----------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRD 202 (633)
T ss_pred -----------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCc
Confidence 23344444431 1 1124589999999643 68889998 999999988764
Q ss_pred hhhHHHHHHHHhccc-------------------------ccCCccC-----HHHHHhhC--CCC-CHHHHHHHHHHHHH
Q 002307 605 AKGRTEILKIHASKV-------------------------KMSDSVD-----LSSYAKNL--PGW-TGARLAQLVQEAAL 651 (938)
Q Consensus 605 ~eeR~eILr~~l~~~-------------------------~l~~dvd-----L~~LA~~t--~Gf-SgaDL~~Lv~eA~l 651 (938)
.+++.++++...... .+...+. +..++..+ .|. +.+....+++-|..
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara 282 (633)
T TIGR02442 203 PEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARA 282 (633)
T ss_pred hHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 577777776533200 0001111 12222221 244 35666678888999
Q ss_pred HHHHhCCcccchhhHHHHHHhhcc
Q 002307 652 VAVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 652 ~A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
.|.-++++.|+.+|+.+|+.-++.
T Consensus 283 ~AaL~gr~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 283 LAALDGRRRVTAEDVREAAELVLP 306 (633)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHhh
Confidence 999999999999999999887763
No 148
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=4.1e-10 Score=135.60 Aligned_cols=202 Identities=21% Similarity=0.306 Sum_probs=138.8
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|+||+|++.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 456899999999999988877642 2456789999999999999999999987542
Q ss_pred -----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhH
Q 002307 486 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 550 (938)
Q Consensus 486 -----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~ 550 (938)
++.+++.+ ..+...++.+...+... ...|++|||+|.+..
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~------------------- 135 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ------------------- 135 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------------
Confidence 12222110 11234567777665432 234999999998742
Q ss_pred HHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-CHHH
Q 002307 551 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSS 629 (938)
Q Consensus 551 e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-dL~~ 629 (938)
...+.|+..|+. .+...++|.+|+.+..+-+++++ |. ..+.+..++.++....++..+.+.++..+. .+..
T Consensus 136 ---~a~naLLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~ 207 (614)
T PRK14971 136 ---AAFNAFLKTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNV 207 (614)
T ss_pred ---HHHHHHHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 235567777763 33455666666667888889988 64 579999999999999998888776654332 3666
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 630 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 630 LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++..+.| +.+++.+++......+ +.. |+.+++.+.+
T Consensus 208 La~~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 208 IAQKADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 7777755 7778877777765544 222 6666655544
No 149
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.20 E-value=6.8e-10 Score=117.36 Aligned_cols=196 Identities=22% Similarity=0.353 Sum_probs=136.8
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
.++..+.+.+++|+|++.+++.|.+-..++.. ..+.++|||||..|||||+|+||+-++. +..++.++.
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 34566789999999999999999766554322 2456789999999999999999998876 677899988
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhC-CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC--cC
Q 002307 492 SEFVEVLVGVGSARIRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DT 568 (938)
Q Consensus 492 sel~~~~vG~~~~~vr~lF~~Ar~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~--~~ 568 (938)
.++.. +-.+++..+.. ..-|||+|++-- + +.......|-..|||- ..
T Consensus 122 ~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e-----------~gd~~yK~LKs~LeG~ve~r 171 (287)
T COG2607 122 EDLAT---------LPDLVELLRARPEKFILFCDDLSF----------E-----------EGDDAYKALKSALEGGVEGR 171 (287)
T ss_pred HHHhh---------HHHHHHHHhcCCceEEEEecCCCC----------C-----------CCchHHHHHHHHhcCCcccC
Confidence 77654 45556555433 446999998732 0 0112233444556654 34
Q ss_pred CCeEEEEEecCCCCcCCcccc--------------------CCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-CH
Q 002307 569 GKGVIFLAATNRRDLLDPALL--------------------RPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DL 627 (938)
Q Consensus 569 ~~~ViVIAATN~pd~LDpALl--------------------RpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-dL 627 (938)
+.+|+|.||+|+.+.++.... =+.||...+.|.+++.++-..|+++++++.+++.+. .+
T Consensus 172 P~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l 251 (287)
T COG2607 172 PANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEEL 251 (287)
T ss_pred CCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 578999999999765542111 124999999999999999999999999888766431 12
Q ss_pred H----HHHhhCCCCCHHHHHHHHHH
Q 002307 628 S----SYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 628 ~----~LA~~t~GfSgaDL~~Lv~e 648 (938)
. +.|..-.|-||+-..+.++.
T Consensus 252 ~~eAl~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 252 HAEALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHHHHHHHhcCCCccHhHHHHHHH
Confidence 2 23334446677666665554
No 150
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.19 E-value=2.8e-10 Score=133.85 Aligned_cols=213 Identities=22% Similarity=0.292 Sum_probs=133.9
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc------------------
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------------------ 482 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el------------------ 482 (938)
...|+||.|++.+++.+.-. +.....++|.||||||||++++++++-+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~a--------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIA--------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhh--------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 45899999999987665332 2345689999999999999999998622
Q ss_pred ----------CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHH
Q 002307 483 ----------GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 552 (938)
Q Consensus 483 ----------g~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~ 552 (938)
..||...+++......+|.+.......+..|. ..+|||||++.+... .
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~~-------------------~ 311 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKRS-------------------V 311 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCHH-------------------H
Confidence 24555444443333334433222223444443 359999999986432 2
Q ss_pred HHHHHHHHHHhc------C--CcCCCeEEEEEecCCC------C-----------------cCCccccCCCccceEEecc
Q 002307 553 ETTLNQLLIELD------G--FDTGKGVIFLAATNRR------D-----------------LLDPALLRPGRFDRKIRIR 601 (938)
Q Consensus 553 ~~~LnqLL~eLD------g--~~~~~~ViVIAATN~p------d-----------------~LDpALlRpGRFdr~I~V~ 601 (938)
...+.+.|+.-. + ..-..++.+|+++|.- + .+...|++ |||.++.++
T Consensus 312 ~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~ 389 (499)
T TIGR00368 312 LDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVP 389 (499)
T ss_pred HHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEc
Confidence 333444443210 0 0113568999999962 1 47788888 999999998
Q ss_pred CCChhh-------------HHHHHHH------Hhccc---ccCCccC-------------HHH---HHhhCCCCCHHHHH
Q 002307 602 APNAKG-------------RTEILKI------HASKV---KMSDSVD-------------LSS---YAKNLPGWTGARLA 643 (938)
Q Consensus 602 lPd~ee-------------R~eILr~------~l~~~---~l~~dvd-------------L~~---LA~~t~GfSgaDL~ 643 (938)
.++.++ |..+.+. .++.. .+...+. ..+ -+....++|.+...
T Consensus 390 ~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~ 469 (499)
T TIGR00368 390 LLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATH 469 (499)
T ss_pred CCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHH
Confidence 765432 2233222 11111 1111111 111 12223468999999
Q ss_pred HHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 644 QLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 644 ~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
.+++-|...|.-++.+.|+.+|+.+|+.
T Consensus 470 rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 470 RILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999999999999985
No 151
>PHA02244 ATPase-like protein
Probab=99.18 E-value=7.5e-10 Score=124.78 Aligned_cols=157 Identities=24% Similarity=0.266 Sum_probs=95.2
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG 500 (938)
.+++..+.+..........+..++. .+.+|||+||||||||++|+++|..++.||+.+++..-.....|
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~-----------~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G 161 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVN-----------ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG 161 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHh-----------cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc
Confidence 3444444444444444444444443 23479999999999999999999999999999985311111111
Q ss_pred ---hhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH-----hcCC-cCCCe
Q 002307 501 ---VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE-----LDGF-DTGKG 571 (938)
Q Consensus 501 ---~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e-----LDg~-~~~~~ 571 (938)
....-...-|-.|. ...++|+||||+.+.+. ....++.++.. .++. ....+
T Consensus 162 ~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~-------------------vq~~L~~lLd~r~l~l~g~~i~~h~~ 221 (383)
T PHA02244 162 FIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE-------------------ALIIINSAIANKFFDFADERVTAHED 221 (383)
T ss_pred cccccccccchHHHHHh-hcCCEEEEeCcCcCCHH-------------------HHHHHHHHhccCeEEecCcEEecCCC
Confidence 11111112233333 34579999999986533 22334444432 1111 23467
Q ss_pred EEEEEecCCC-----------CcCCccccCCCccceEEeccCCChhhHHHHH
Q 002307 572 VIFLAATNRR-----------DLLDPALLRPGRFDRKIRIRAPNAKGRTEIL 612 (938)
Q Consensus 572 ViVIAATN~p-----------d~LDpALlRpGRFdr~I~V~lPd~eeR~eIL 612 (938)
+.+|+|+|.+ ..+++++++ ||- .|+++.|+. ....|.
T Consensus 222 FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 222 FRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK-IEHLIS 269 (383)
T ss_pred EEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH-HHHHHh
Confidence 8999999973 577999998 995 789999873 333444
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.2e-10 Score=140.86 Aligned_cols=161 Identities=30% Similarity=0.427 Sum_probs=111.2
Q ss_pred CcccCcHHHHHHHHHHHHH----hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC---CCEEEEeCchhHHH
Q 002307 425 SDVAGIDEAVEELQELVRY----LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEV 497 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~----Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sel~~~ 497 (938)
+.|+|++++...+.+.|.. +.+|. +|-..+||.||+|+|||-||+++|..+. ..++.+++|++.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 5589999999999888876 34443 3344688899999999999999999995 89999999999875
Q ss_pred ------------HhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC
Q 002307 498 ------------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 565 (938)
Q Consensus 498 ------------~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg 565 (938)
|+|-.+. ..+-+..+++..|||++|||+.-. ...+|-||+.||.
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH----------------------pdV~nilLQVlDd 619 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH----------------------PDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC----------------------HHHHHHHHHHhcC
Confidence 3333221 123344455667899999999843 2457777777763
Q ss_pred C---cC------CCeEEEEEecCCCC----------------------------cCCccccCCCccceEEeccCCChhhH
Q 002307 566 F---DT------GKGVIFLAATNRRD----------------------------LLDPALLRPGRFDRKIRIRAPNAKGR 608 (938)
Q Consensus 566 ~---~~------~~~ViVIAATN~pd----------------------------~LDpALlRpGRFdr~I~V~lPd~eeR 608 (938)
= +. -++.+||+|||--. .+.|+++. |+|.+|.|.+.+.+..
T Consensus 620 GrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l 697 (786)
T COG0542 620 GRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVL 697 (786)
T ss_pred CeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHH
Confidence 1 11 14578999999521 12234444 6666666666666666
Q ss_pred HHHHHHHhcc
Q 002307 609 TEILKIHASK 618 (938)
Q Consensus 609 ~eILr~~l~~ 618 (938)
.+|+...+..
T Consensus 698 ~~Iv~~~L~~ 707 (786)
T COG0542 698 ERIVDLQLNR 707 (786)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.17 E-value=6.3e-10 Score=138.52 Aligned_cols=198 Identities=22% Similarity=0.280 Sum_probs=126.7
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCce-EEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH---
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHG-VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV--- 497 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~G-VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~--- 497 (938)
+.|+|++++++.+.+.+...+..-.+ -..|.| +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 46899999999998887653211000 023444 8999999999999999999988 458899999988653
Q ss_pred ---------HhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc-
Q 002307 498 ---------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD- 567 (938)
Q Consensus 498 ---------~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~- 567 (938)
|+|.... ..+....+.+..+||+|||||...+ ...+.|++.+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~----------------------~v~~~Llq~ld~g~l 697 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP----------------------DVLELFYQVFDKGVM 697 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH----------------------HHHHHHHHHhhccee
Confidence 2232211 1133444556779999999987432 22334444443210
Q ss_pred --------CCCeEEEEEecCCCC-----------------------------cCCccccCCCccceEEeccCCChhhHHH
Q 002307 568 --------TGKGVIFLAATNRRD-----------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTE 610 (938)
Q Consensus 568 --------~~~~ViVIAATN~pd-----------------------------~LDpALlRpGRFdr~I~V~lPd~eeR~e 610 (938)
.-.+.+||.|||... .+.|+++. |++ .|.|.+.+.++..+
T Consensus 698 ~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~ 774 (852)
T TIGR03345 698 EDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAA 774 (852)
T ss_pred ecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHH
Confidence 014578889998521 14456666 887 88999999999999
Q ss_pred HHHHHhccc--------ccCCccC---HHHHHhhCCC--CCHHHHHHHHHHHHHHH
Q 002307 611 ILKIHASKV--------KMSDSVD---LSSYAKNLPG--WTGARLAQLVQEAALVA 653 (938)
Q Consensus 611 ILr~~l~~~--------~l~~dvd---L~~LA~~t~G--fSgaDL~~Lv~eA~l~A 653 (938)
|++..+... ++.-.++ ++.++....+ +-.+.|.++++.-...+
T Consensus 775 Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 775 IVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred HHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Confidence 998776542 1111122 4456655432 44677777776654433
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.16 E-value=9.8e-10 Score=137.22 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=129.0
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH----
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV---- 497 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~---- 497 (938)
+.|+|++.+++.+.+.+...+..-. -..+|...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 5689999999999988876421100 001344569999999999999999999976 578999999887542
Q ss_pred -HhhhhhH-----HHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC-C-c--
Q 002307 498 -LVGVGSA-----RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-F-D-- 567 (938)
Q Consensus 498 -~vG~~~~-----~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg-~-~-- 567 (938)
+.|.... ....+....+....+||+||||+.+.+. . .+.|++.++. . .
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~-------------------v---~~~Ll~~l~~g~l~d~ 699 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPD-------------------V---FNVLLQVLDDGRLTDG 699 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHH-------------------H---HHHHHHHHhcCceecC
Confidence 2221110 1122333334455579999999985432 2 3344444431 1 0
Q ss_pred -----CCCeEEEEEecCCCC-------------------------cCCccccCCCccceEEeccCCChhhHHHHHHHHhc
Q 002307 568 -----TGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (938)
Q Consensus 568 -----~~~~ViVIAATN~pd-------------------------~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~ 617 (938)
.-.+.+||+|||... .+.|.|+. |+|.++.+.+++.+...+|+...+.
T Consensus 700 ~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 700 QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 124578899999722 13355665 9999999999999999999887765
Q ss_pred ccc-------cCCccC---HHHHHhhC--CCCCHHHHHHHHHHHHHHH
Q 002307 618 KVK-------MSDSVD---LSSYAKNL--PGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 618 ~~~-------l~~dvd---L~~LA~~t--~GfSgaDL~~Lv~eA~l~A 653 (938)
... +...++ +..|++.. +.+..+.|++++++.....
T Consensus 778 ~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 778 RLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred HHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 321 111122 44555542 2456788888887776544
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.16 E-value=8.3e-10 Score=137.66 Aligned_cols=164 Identities=26% Similarity=0.396 Sum_probs=110.6
Q ss_pred cCcccCcHHHHHHHHHHHHHhc----CchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 002307 424 FSDVAGIDEAVEELQELVRYLK----NPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~Lk----~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~ 496 (938)
++.|+|++.+++.+.+.+...+ +|. +|...+||+||||||||++|++||..+ +.+++.++|+++.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 5678999999999998887643 221 222468999999999999999999876 56899999998765
Q ss_pred H-----HhhhhhH----HHHHHHHHH-HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC-
Q 002307 497 V-----LVGVGSA----RIRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG- 565 (938)
Q Consensus 497 ~-----~vG~~~~----~vr~lF~~A-r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg- 565 (938)
. +.|.... .-...+..+ +....+||+|||++.+.+. ..+.|+..++.
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~----------------------v~~~Ll~ile~g 697 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPD----------------------VFNILLQVLDDG 697 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHH----------------------HHHHHHHHHhhC
Confidence 3 2221100 001123333 3344489999999975422 23344444431
Q ss_pred C-c-------CCCeEEEEEecCCCC-------------------------cCCccccCCCccceEEeccCCChhhHHHHH
Q 002307 566 F-D-------TGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEIL 612 (938)
Q Consensus 566 ~-~-------~~~~ViVIAATN~pd-------------------------~LDpALlRpGRFdr~I~V~lPd~eeR~eIL 612 (938)
. . .-.+.+||+|||... .+.|+++. |+|.++.+.+++.+....|+
T Consensus 698 ~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv 775 (857)
T PRK10865 698 RLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIA 775 (857)
T ss_pred ceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHH
Confidence 1 0 123467888999721 24467776 99999999999999999998
Q ss_pred HHHhcc
Q 002307 613 KIHASK 618 (938)
Q Consensus 613 r~~l~~ 618 (938)
+..+..
T Consensus 776 ~~~L~~ 781 (857)
T PRK10865 776 QIQLQR 781 (857)
T ss_pred HHHHHH
Confidence 887765
No 156
>PRK09087 hypothetical protein; Validated
Probab=99.15 E-value=3e-10 Score=121.02 Aligned_cols=172 Identities=14% Similarity=0.149 Sum_probs=116.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 538 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~ 538 (938)
..++|+||+|+|||+|+++++...+..++ +..++...+. ..... .+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC-------
Confidence 34899999999999999999988766543 3333332221 11111 3788999997531
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCC---cCCccccCCCccc--eEEeccCCChhhHHHHHH
Q 002307 539 DTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD---LLDPALLRPGRFD--RKIRIRAPNAKGRTEILK 613 (938)
Q Consensus 539 ~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd---~LDpALlRpGRFd--r~I~V~lPd~eeR~eILr 613 (938)
...+.-.++|.+. .....+||+++..|. ...+.|++ ||. ..+.+..|+.++|.++++
T Consensus 102 ---------~~~~lf~l~n~~~-------~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 102 ---------DETGLFHLINSVR-------QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred ---------CHHHHHHHHHHHH-------hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHH
Confidence 1122333444432 223456666655544 23677887 775 688999999999999999
Q ss_pred HHhcccccCCcc-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 614 IHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 614 ~~l~~~~l~~dv-dL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
.++....+.-+. .+..++++..| +.+.+..+++.....+...+ ..||...+.+++...
T Consensus 164 ~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 164 KLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 999876554332 36778888776 77888888877766665544 568999998888764
No 157
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.15 E-value=1e-10 Score=138.44 Aligned_cols=209 Identities=23% Similarity=0.349 Sum_probs=127.0
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHh-----------cCCCEEEEe
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE-----------AGVPFYQMA 490 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~e-----------lg~pfi~vs 490 (938)
.+|++++|.+..++.+.+.+..+.. .+.+|||+|++||||+++|++|... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4689999999999999888876432 2348999999999999999999876 467999999
Q ss_pred CchhHHH-----Hhhhhh--------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 491 GSEFVEV-----LVGVGS--------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 491 ~sel~~~-----~vG~~~--------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
|..+.+. +.|... ..-..+|+.|. ...||||||+.+... .+..+.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------------~Q~kLl 343 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-------------------LQTRLL 343 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-------------------HHHHHH
Confidence 9876443 222110 01123555543 348999999997643 223344
Q ss_pred HHHHHhcC--C----cCCCeEEEEEecCCCCcCCccccCCCccce-------EEeccCCChhhHHH----HHHHHhcccc
Q 002307 558 QLLIELDG--F----DTGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKVK 620 (938)
Q Consensus 558 qLL~eLDg--~----~~~~~ViVIAATN~pd~LDpALlRpGRFdr-------~I~V~lPd~eeR~e----ILr~~l~~~~ 620 (938)
.+|++-.- . ....++.+|++||.. +. .+...|+|.. .+.+.+|+..+|.+ ++++++.+..
T Consensus 344 ~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~ 420 (538)
T PRK15424 344 RVLEEKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSL 420 (538)
T ss_pred hhhhcCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHH
Confidence 44443210 0 112356899999863 21 1122233332 46677888888765 4455554321
Q ss_pred --cCCccCH----------HHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhH
Q 002307 621 --MSDSVDL----------SSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDM 666 (938)
Q Consensus 621 --l~~dvdL----------~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl 666 (938)
....+.- ..|... ++| +.++|++++++++..+.......|+.+++
T Consensus 421 ~~~~~~~~~~a~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 421 AALSAPFSAALRQGLQQCETLLLHYDWPG-NVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHcCCCCCHHHHHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 1111211 112111 556 78999999999988653222245555554
No 158
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.4e-09 Score=123.07 Aligned_cols=191 Identities=18% Similarity=0.213 Sum_probs=124.6
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-------CEEEE--
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFYQM-- 489 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~-------pfi~v-- 489 (938)
..+..|++|+|++++++.|...+.. .+.|+.+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3566899999999999999887642 255778999999999999999999998754 21111
Q ss_pred --eCchhHHH----------H------------hhhhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcc
Q 002307 490 --AGSEFVEV----------L------------VGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTT 541 (938)
Q Consensus 490 --s~sel~~~----------~------------vG~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~ 541 (938)
.|...... + ...+...+|.+..... .....|++|||+|.+..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 11111000 0 0011234454443322 23456999999999742
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhccccc
Q 002307 542 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM 621 (938)
Q Consensus 542 ~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l 621 (938)
...|.||..++. .+.+.++|..|+.++.+.+.+++ |+ ..+.+++|+.++-.++|+.......+
T Consensus 156 ------------~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~ 218 (351)
T PRK09112 156 ------------NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS 218 (351)
T ss_pred ------------HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC
Confidence 234567777764 33455555556778888899987 86 69999999999999999875332221
Q ss_pred CCccCHHHHHhhCCCCCHHHHHHHHHHH
Q 002307 622 SDSVDLSSYAKNLPGWTGARLAQLVQEA 649 (938)
Q Consensus 622 ~~dvdL~~LA~~t~GfSgaDL~~Lv~eA 649 (938)
. +..+..+++.+.| +++...++++..
T Consensus 219 ~-~~~~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 219 D-GEITEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred C-HHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 1 2225566776766 676666665543
No 159
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=1.8e-09 Score=116.19 Aligned_cols=191 Identities=14% Similarity=0.190 Sum_probs=118.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCC-CEEE---EeC----chhHHH---Hhhhhh---------HHHHHHH-HHHHhCC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQ---MAG----SEFVEV---LVGVGS---------ARIRDLF-KRAKVNK 517 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~-pfi~---vs~----sel~~~---~vG~~~---------~~vr~lF-~~Ar~~~ 517 (938)
..++|+||+|+|||++++.+++++.. .+.. +++ .++... ..|... ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 2221 111 122211 112110 1122212 2234567
Q ss_pred CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecC--CCCcCC----ccccCC
Q 002307 518 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATN--RRDLLD----PALLRP 591 (938)
Q Consensus 518 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN--~pd~LD----pALlRp 591 (938)
+.+|+|||+|.+... ....+..+..... .....+.|+.+.. ..+.+. ..+.+
T Consensus 124 ~~vliiDe~~~l~~~-------------------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~- 181 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ- 181 (269)
T ss_pred CeEEEEECcccCCHH-------------------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh-
Confidence 789999999986421 1122222222111 1222333333322 121221 12434
Q ss_pred CccceEEeccCCChhhHHHHHHHHhcccccC-----CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhH
Q 002307 592 GRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDM 666 (938)
Q Consensus 592 GRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-----~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl 666 (938)
|+...+++++.+.++..+++...+...+.. .+..+..+++.+.|. ++.|..+|+.+...|..++...|+.+++
T Consensus 182 -r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v 259 (269)
T TIGR03015 182 -RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEV 259 (269)
T ss_pred -heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 777788999999999999999888654321 223467788889885 6779999999999999999999999999
Q ss_pred HHHHHhh
Q 002307 667 DDAVDRL 673 (938)
Q Consensus 667 ~~Ai~rv 673 (938)
..++..+
T Consensus 260 ~~~~~~~ 266 (269)
T TIGR03015 260 REVIAEI 266 (269)
T ss_pred HHHHHHh
Confidence 9999865
No 160
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.11 E-value=3.5e-10 Score=133.93 Aligned_cols=216 Identities=23% Similarity=0.286 Sum_probs=130.3
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 497 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~ 497 (938)
..+|++++|.+..++.+.+.+..+.. .+.+|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 36799999999999999888876432 23489999999999999999998754 679999999876443
Q ss_pred H-----hhhhh--------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc
Q 002307 498 L-----VGVGS--------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 564 (938)
Q Consensus 498 ~-----vG~~~--------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD 564 (938)
. .|... ..-..+|+.|. ...||||||+.+... .+..+..+|++-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------------~Q~~Ll~~L~~~~ 335 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-------------------LQTRLLRVLEERE 335 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-------------------HHHHHHHHHhcCc
Confidence 2 22110 01223455443 358999999997643 2333444444321
Q ss_pred C--C----cCCCeEEEEEecCCCC--cCCccccCCCccce--EEeccCCChhhHHH----HHHHHhccccc--CCccCH-
Q 002307 565 G--F----DTGKGVIFLAATNRRD--LLDPALLRPGRFDR--KIRIRAPNAKGRTE----ILKIHASKVKM--SDSVDL- 627 (938)
Q Consensus 565 g--~----~~~~~ViVIAATN~pd--~LDpALlRpGRFdr--~I~V~lPd~eeR~e----ILr~~l~~~~l--~~dvdL- 627 (938)
- . ....++.+|++||..- .+....+|+.-|.+ .+.+.+|+..+|.+ ++++++..... ...++-
T Consensus 336 ~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ 415 (526)
T TIGR02329 336 VVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA 415 (526)
T ss_pred EEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 0 0 1123468888888632 22222222111111 45677788887765 44555543211 111221
Q ss_pred --HH-------HHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHH
Q 002307 628 --SS-------YAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 669 (938)
Q Consensus 628 --~~-------LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~A 669 (938)
.. |.+. ++| +-++|++++++++..+.......|+.+++...
T Consensus 416 a~~~~~~~~~~L~~y~WPG-NvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 416 AAQVLAGVADPLQRYPWPG-NVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 11 2222 455 78999999999987753223456787776543
No 161
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.11 E-value=9.5e-10 Score=123.12 Aligned_cols=134 Identities=31% Similarity=0.430 Sum_probs=89.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH--HhhhhhHHHH----H--------HHHHHHhCCCeEEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGVGSARIR----D--------LFKRAKVNKPSVIFI 523 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~--~vG~~~~~vr----~--------lF~~Ar~~~P~ILfI 523 (938)
.+++||.||||||||++|+++|..++.+|+.++|...... ..|...-... . +|.... +|+++
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 4579999999999999999999999999999999764432 2222111110 0 111111 49999
Q ss_pred cCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc------C-CcCCCeEEEEEecC-----CCCcCCccccCC
Q 002307 524 DEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD------G-FDTGKGVIFLAATN-----RRDLLDPALLRP 591 (938)
Q Consensus 524 DEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD------g-~~~~~~ViVIAATN-----~pd~LDpALlRp 591 (938)
|||+...+ ..+..+.+.+.+.. . +.-+..++||+|+| ....+++|+++
T Consensus 119 DEInra~p-------------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld- 178 (329)
T COG0714 119 DEINRAPP-------------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD- 178 (329)
T ss_pred eccccCCH-------------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh-
Confidence 99998433 23444444444421 1 33456789999999 44578999999
Q ss_pred CccceEEeccCCChh-hHHHHHHHHh
Q 002307 592 GRFDRKIRIRAPNAK-GRTEILKIHA 616 (938)
Q Consensus 592 GRFdr~I~V~lPd~e-eR~eILr~~l 616 (938)
||...++++.|+.+ +...++....
T Consensus 179 -Rf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 179 -RFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred -hEEEEEecCCCCchHHHHHHHHhCc
Confidence 99889999999444 4444444433
No 162
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.11 E-value=1.7e-09 Score=125.72 Aligned_cols=213 Identities=16% Similarity=0.173 Sum_probs=126.4
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCc-hhHHHHhhhh
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGS-EFVEVLVGVG 502 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~s-el~~~~vG~~ 502 (938)
.|+|.+++++.+...+ -...+|||+||||||||++|++++...+. +|....+. .......|..
T Consensus 21 ~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 3678888766664432 23457999999999999999999997643 55554443 1122333321
Q ss_pred -hHHH--HHHHHHHHhC---CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC-C-cC------
Q 002307 503 -SARI--RDLFKRAKVN---KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-F-DT------ 568 (938)
Q Consensus 503 -~~~v--r~lF~~Ar~~---~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg-~-~~------ 568 (938)
.... ...|...... ...+||+|||..+.++ +.+.||..|.. . ..
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~----------------------~QsaLLeam~Er~~t~g~~~~~ 144 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA----------------------ILNTLLTAINERRFRNGAHEEK 144 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCHH----------------------HHHHHHHHHHhCeEecCCeEEe
Confidence 0111 1223221111 2349999999875433 34445555521 1 00
Q ss_pred CCeEEEEEecCCCC---cCCccccCCCccceEEeccCCC-hhhHHHHHHHHhcc--cccC--CccC--------------
Q 002307 569 GKGVIFLAATNRRD---LLDPALLRPGRFDRKIRIRAPN-AKGRTEILKIHASK--VKMS--DSVD-------------- 626 (938)
Q Consensus 569 ~~~ViVIAATN~pd---~LDpALlRpGRFdr~I~V~lPd-~eeR~eILr~~l~~--~~l~--~dvd-------------- 626 (938)
-...++++|||... ...+++.. ||-..+.+++|+ .++-.+++...... .... ..+.
T Consensus 145 lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V 222 (498)
T PRK13531 145 IPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKI 222 (498)
T ss_pred CCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcce
Confidence 01134455667421 23348888 998889999996 45557777653221 1010 0010
Q ss_pred ---------HHHHHhh---C---CCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCC
Q 002307 627 ---------LSSYAKN---L---PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 627 ---------L~~LA~~---t---~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~ 677 (938)
+..+... + ...|++-...+++-|...|.-.|+..++.+|+. .+..+++..
T Consensus 223 ~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 223 TLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred eCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 1233321 2 237899999999999999999999999999999 666666643
No 163
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.11 E-value=4.5e-10 Score=133.52 Aligned_cols=211 Identities=23% Similarity=0.312 Sum_probs=127.6
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhH
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 495 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~ 495 (938)
....+|++++|.+...+++.+.+..+.. ...+|||+|++|||||++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3456899999999999998888776542 23479999999999999999999875 6799999998764
Q ss_pred HHHh-----hhhhH-------HHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh
Q 002307 496 EVLV-----GVGSA-------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (938)
Q Consensus 496 ~~~v-----G~~~~-------~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL 563 (938)
+... |.... .....|..| ...+|||||||.+... .+..+..++..-
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~-------------------~Q~~Ll~~l~~~ 317 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPA-------------------FQAKLLRVLQEG 317 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHH-------------------HHHHHHHHHhcC
Confidence 4321 11100 001123322 3569999999997643 223333344321
Q ss_pred cC--Cc----CCCeEEEEEecCCCCcCCccccCCCccce-------EEeccCCChhhHH----HHHHHHhcccc----cC
Q 002307 564 DG--FD----TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRT----EILKIHASKVK----MS 622 (938)
Q Consensus 564 Dg--~~----~~~~ViVIAATN~pd~LDpALlRpGRFdr-------~I~V~lPd~eeR~----eILr~~l~~~~----l~ 622 (938)
.. .. ...++.+|++|+..- .. +...|+|.. .+.+.+|+..+|. .|+++++.... ..
T Consensus 318 ~~~~~~~~~~~~~~~riI~~s~~~l--~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~ 394 (534)
T TIGR01817 318 EFERVGGNRTLKVDVRLVAATNRDL--EE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRP 394 (534)
T ss_pred cEEECCCCceEeecEEEEEeCCCCH--HH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCC
Confidence 10 00 112478888887531 11 112233321 3455566666553 35555554322 11
Q ss_pred CccC---HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHH
Q 002307 623 DSVD---LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (938)
Q Consensus 623 ~dvd---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~ 668 (938)
..++ +..|... ++| +.++|++++++|+..+ ....|+.+|+..
T Consensus 395 ~~~s~~a~~~L~~~~WPG-NvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 395 LTITPSAIRVLMSCKWPG-NVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred CCCCHHHHHHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 2233 3444444 455 7899999999988765 456788877643
No 164
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.10 E-value=8.7e-10 Score=123.73 Aligned_cols=191 Identities=22% Similarity=0.262 Sum_probs=114.9
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH-----
Q 002307 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----- 498 (938)
Q Consensus 427 VvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~----- 498 (938)
++|.+.+.+.+.+.+..+.. ...+|||+|++||||+++|++|.... +.||+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 46888888888777776532 23579999999999999999997754 5799999998654322
Q ss_pred hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc--C----
Q 002307 499 VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--G---- 565 (938)
Q Consensus 499 vG~~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD--g---- 565 (938)
.|... ......|+.| ...+|||||||.+... .+..+..+|..-. .
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-------------------~Q~~Ll~~l~~~~~~~~g~~ 128 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-------------------VQEKLLRVIEYGEFERVGGS 128 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-------------------HHHHHHHHHHcCcEEecCCC
Confidence 12110 0111234443 3469999999997543 2233334443311 0
Q ss_pred CcCCCeEEEEEecCCCC-------cCCccccCCCccceEEeccCCChhhHHH----HHHHHhccc----ccC--CccC--
Q 002307 566 FDTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS--DSVD-- 626 (938)
Q Consensus 566 ~~~~~~ViVIAATN~pd-------~LDpALlRpGRFdr~I~V~lPd~eeR~e----ILr~~l~~~----~l~--~dvd-- 626 (938)
.....++.+|++||..- .+.+.|.. |+. .+.|..|+..+|.+ ++++++... +.. ..++
T Consensus 129 ~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~ 205 (329)
T TIGR02974 129 QTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ 205 (329)
T ss_pred ceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH
Confidence 01124578999998631 23334443 443 45677788877755 344444321 111 1233
Q ss_pred -HHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 002307 627 -LSSYAKN-LPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 627 -L~~LA~~-t~GfSgaDL~~Lv~eA~l~A 653 (938)
+..|... ++| +.++|++++++++..+
T Consensus 206 a~~~L~~y~WPG-NvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 206 AREQLLEYHWPG-NVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHhCCCCc-hHHHHHHHHHHHHHhC
Confidence 3333333 355 7899999999988765
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.10 E-value=5.1e-10 Score=104.71 Aligned_cols=128 Identities=34% Similarity=0.486 Sum_probs=82.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCC---EEEEeCchhHHHH--------------hhhhhHHHHHHHHHHHhCCCeE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEFVEVL--------------VGVGSARIRDLFKRAKVNKPSV 520 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~p---fi~vs~sel~~~~--------------vG~~~~~vr~lF~~Ar~~~P~I 520 (938)
+..++|+||||||||++++.+|..+..+ ++.++++...... ........+..+..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 8888877543321 1234556778888888888899
Q ss_pred EEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCC-CCcCCccccCCCccceEEe
Q 002307 521 IFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPGRFDRKIR 599 (938)
Q Consensus 521 LfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~-pd~LDpALlRpGRFdr~I~ 599 (938)
|+|||++.+....... ............. .....+..+|+++|. ....+..+.+ |++..+.
T Consensus 82 iiiDei~~~~~~~~~~-------------~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 143 (148)
T smart00382 82 LILDEITSLLDAEQEA-------------LLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIV 143 (148)
T ss_pred EEEECCcccCCHHHHH-------------HHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhh--ccceEEE
Confidence 9999999986543110 0000000000011 123456788888886 3334444444 8888887
Q ss_pred ccCC
Q 002307 600 IRAP 603 (938)
Q Consensus 600 V~lP 603 (938)
+..+
T Consensus 144 ~~~~ 147 (148)
T smart00382 144 LLLI 147 (148)
T ss_pred ecCC
Confidence 7654
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.09 E-value=2.6e-09 Score=132.97 Aligned_cols=167 Identities=26% Similarity=0.326 Sum_probs=111.7
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH-----
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE----- 496 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~----- 496 (938)
+.|+|++++++.+.+.+...+..-. . .-+|...+||+||+|||||++|+++|..+ +.+++.++++++.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~--~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK--N-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc--C-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 5589999999999888765321100 0 01233458999999999999999999987 46899999888743
Q ss_pred HHhhhhh-----HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC-C----
Q 002307 497 VLVGVGS-----ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-F---- 566 (938)
Q Consensus 497 ~~vG~~~-----~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg-~---- 566 (938)
.+.|... .....+....+.+..+||+|||+|.+.+ ...+.|++.++. .
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~----------------------~v~~~Llq~le~g~~~d~ 643 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP----------------------DIFNLLLQILDDGRLTDS 643 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH----------------------HHHHHHHHHhccCceecC
Confidence 2233211 1122344445555558999999998542 234455555542 1
Q ss_pred ----cCCCeEEEEEecCCCCc-------------------------------------CCccccCCCccceEEeccCCCh
Q 002307 567 ----DTGKGVIFLAATNRRDL-------------------------------------LDPALLRPGRFDRKIRIRAPNA 605 (938)
Q Consensus 567 ----~~~~~ViVIAATN~pd~-------------------------------------LDpALlRpGRFdr~I~V~lPd~ 605 (938)
..-++.+||+|||.... +.|.++. |+|.+|.|.+.+.
T Consensus 644 ~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~ 721 (821)
T CHL00095 644 KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTK 721 (821)
T ss_pred CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCH
Confidence 01256889999985321 1234555 9999999999999
Q ss_pred hhHHHHHHHHhcc
Q 002307 606 KGRTEILKIHASK 618 (938)
Q Consensus 606 eeR~eILr~~l~~ 618 (938)
++..+|++..+.+
T Consensus 722 ~~l~~Iv~~~l~~ 734 (821)
T CHL00095 722 NDVWEIAEIMLKN 734 (821)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877764
No 167
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.09 E-value=1e-09 Score=122.93 Aligned_cols=195 Identities=21% Similarity=0.240 Sum_probs=118.7
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH--
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-- 497 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~-- 497 (938)
.+++++|.+...+.+.+.+..+.. .+.+|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 467899999999998888776532 34579999999999999999997654 579999999876432
Q ss_pred ---Hhhhhh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC-
Q 002307 498 ---LVGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF- 566 (938)
Q Consensus 498 ---~vG~~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~- 566 (938)
+.|... ......|..| ...+|||||||.+... .+..+..++..-...
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-------------------~Q~~L~~~l~~~~~~~ 131 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-------------------VQEKLLRVIEYGELER 131 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-------------------HHHHHHHHHhcCcEEe
Confidence 222110 0112234333 3468999999997643 223333444321100
Q ss_pred -----cCCCeEEEEEecCCC-------CcCCccccCCCccceEEeccCCChhhHHH----HHHHHhccc----ccC--Cc
Q 002307 567 -----DTGKGVIFLAATNRR-------DLLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS--DS 624 (938)
Q Consensus 567 -----~~~~~ViVIAATN~p-------d~LDpALlRpGRFdr~I~V~lPd~eeR~e----ILr~~l~~~----~l~--~d 624 (938)
....++.||++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ ++++++... +.. ..
T Consensus 132 ~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ 208 (326)
T PRK11608 132 VGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPG 208 (326)
T ss_pred CCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 112357888888763 134444544 553 34566677777754 444544332 111 22
Q ss_pred cC---HHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 002307 625 VD---LSSYAKN-LPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 625 vd---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A 653 (938)
++ +..|.+. ++| +.++|++++++|+..+
T Consensus 209 ~s~~al~~L~~y~WPG-NvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 209 FTERARETLLNYRWPG-NIRELKNVVERSVYRH 240 (326)
T ss_pred CCHHHHHHHHhCCCCc-HHHHHHHHHHHHHHhc
Confidence 33 2333333 455 7899999999988754
No 168
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.09 E-value=1.3e-09 Score=132.33 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=128.5
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH-
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE- 496 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~- 496 (938)
..+|++++|.+...+++.+.+..+.. ...+|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999998888777765432 23479999999999999999998865 57999999987643
Q ss_pred ----HHhhhh----hHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC--C
Q 002307 497 ----VLVGVG----SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG--F 566 (938)
Q Consensus 497 ----~~vG~~----~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg--~ 566 (938)
.+.|.. .......|+. ....+||||||+.+... .+..+.++|+.-.- .
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-------------------~Q~~Ll~~l~~~~~~~~ 448 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-------------------LQSALLQVLKTGVITRL 448 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-------------------HHHHHHHHHhcCcEEeC
Confidence 233311 0001112333 23569999999997643 22333344432110 0
Q ss_pred cC----CCeEEEEEecCCCCcCCccccCCCccc-------eEEeccCCChhhHHH----HHHHHhcccc----cCCccC-
Q 002307 567 DT----GKGVIFLAATNRRDLLDPALLRPGRFD-------RKIRIRAPNAKGRTE----ILKIHASKVK----MSDSVD- 626 (938)
Q Consensus 567 ~~----~~~ViVIAATN~pd~LDpALlRpGRFd-------r~I~V~lPd~eeR~e----ILr~~l~~~~----l~~dvd- 626 (938)
.. .-++.+|+|||..- ..+...|+|. ..+.+.+|+..+|.+ ++++++.... ....++
T Consensus 449 ~~~~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~ 525 (638)
T PRK11388 449 DSRRLIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDD 525 (638)
T ss_pred CCCceEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCH
Confidence 11 12578999988632 1112223332 156677888888854 3444444321 111223
Q ss_pred --HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 627 --LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 627 --L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+..|.+. .+| +.++|+++++.|...+ ....|+.+|+...+
T Consensus 526 ~a~~~L~~y~WPG-NvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 526 DALARLVSYRWPG-NDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHHcCCCCC-hHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 3344443 345 7899999999988664 44578888876655
No 169
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.09 E-value=1.1e-09 Score=129.62 Aligned_cols=225 Identities=17% Similarity=0.195 Sum_probs=133.2
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE----eCchhHHHHhh
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM----AGSEFVEVLVG 500 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v----s~sel~~~~vG 500 (938)
.+|.|++.+|..+.-.+-.-..+..-+....+...+|||+|+||||||++|++++.......+.. ++..+......
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 34889999877663332111111111112233445799999999999999999999775432221 22222110000
Q ss_pred h---hhHHH-HHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh------cCC--cC
Q 002307 501 V---GSARI-RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL------DGF--DT 568 (938)
Q Consensus 501 ~---~~~~v-r~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL------Dg~--~~ 568 (938)
. +...+ ...+.. ....+++|||+|.+... .+..+.+.+.+- .|. .-
T Consensus 283 ~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~~~-------------------~q~~L~e~me~~~i~i~k~G~~~~l 340 (509)
T smart00350 283 DPETREFTLEGGALVL---ADNGVCCIDEFDKMDDS-------------------DRTAIHEAMEQQTISIAKAGITTTL 340 (509)
T ss_pred ccCcceEEecCccEEe---cCCCEEEEechhhCCHH-------------------HHHHHHHHHhcCEEEEEeCCEEEEe
Confidence 0 00000 011112 23459999999997533 222333333220 111 11
Q ss_pred CCeEEEEEecCCCC-------------cCCccccCCCccceEEec-cCCChhhHHHHHHHHhcccc---------c----
Q 002307 569 GKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHASKVK---------M---- 621 (938)
Q Consensus 569 ~~~ViVIAATN~pd-------------~LDpALlRpGRFdr~I~V-~lPd~eeR~eILr~~l~~~~---------l---- 621 (938)
+.++.||||+|..+ .|++++++ |||..+.+ +.|+.+.+.+|.++.+.... .
T Consensus 341 ~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~ 418 (509)
T smart00350 341 NARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPI 418 (509)
T ss_pred cCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccC
Confidence 35688999999753 58999999 99986554 78999999898887543211 0
Q ss_pred ----------------CCccC--H-H---HHH---hh---------CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHH
Q 002307 622 ----------------SDSVD--L-S---SYA---KN---------LPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 667 (938)
Q Consensus 622 ----------------~~dvd--L-~---~LA---~~---------t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~ 667 (938)
.+.+. . . .+. +. ..+.|++.++.+++-|...|.-+.++.|+.+|+.
T Consensus 419 ~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~ 498 (509)
T smart00350 419 SQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVE 498 (509)
T ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Confidence 00011 0 0 000 10 1256889999999999999999999999999999
Q ss_pred HHHHhh
Q 002307 668 DAVDRL 673 (938)
Q Consensus 668 ~Ai~rv 673 (938)
+|+.-+
T Consensus 499 ~ai~l~ 504 (509)
T smart00350 499 EAIRLL 504 (509)
T ss_pred HHHHHH
Confidence 998754
No 170
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.9e-09 Score=130.62 Aligned_cols=219 Identities=20% Similarity=0.275 Sum_probs=149.2
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEe
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 490 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs 490 (938)
.-+++-|+|.++.++++.+++.. +..++-+|+|+||+|||.++..+|.+. +..++.++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 44678899999998877776543 122356899999999999999999865 45677888
Q ss_pred CchhHH--HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC
Q 002307 491 GSEFVE--VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 568 (938)
Q Consensus 491 ~sel~~--~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~ 568 (938)
...++. +|.|+.+++++.+++......+.||||||||.+-+......+ .+| ....+.-.| .
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~D---------AaNiLKPaL-------A 296 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMD---------AANLLKPAL-------A 296 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccc---------hhhhhHHHH-------h
Confidence 777765 588999999999999999888999999999999766432111 111 111222222 2
Q ss_pred CCeEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-----HHHHHhh-----
Q 002307 569 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-----LSSYAKN----- 633 (938)
Q Consensus 569 ~~~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-----L~~LA~~----- 633 (938)
+..+.+|+||...+ .-|+||-| ||. .|.+.-|+.++-..||+..-.+......+. +..-+..
T Consensus 297 RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 297 RGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred cCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 35678888887644 45899999 996 788999999999999998776654444332 2222222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 634 LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 634 t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
+..|-|.-.-.++.+|+....-+.......+.++.-+.
T Consensus 374 ~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~ 411 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELA 411 (786)
T ss_pred ccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHH
Confidence 23344555667788887665443222333334443333
No 171
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.07 E-value=4.1e-10 Score=128.15 Aligned_cols=200 Identities=27% Similarity=0.364 Sum_probs=124.2
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHh----cCCCEEEEeCchhH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE----AGVPFYQMAGSEFV 495 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~e----lg~pfi~vs~sel~ 495 (938)
....+.+++|.+...+++.+.+..+. +...+|||.|++||||+++|++|... .+.||+.+||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 45678999999999888887776532 23457999999999999999999643 46799999998765
Q ss_pred HHHh-----hh-------hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh
Q 002307 496 EVLV-----GV-------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (938)
Q Consensus 496 ~~~v-----G~-------~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL 563 (938)
+... |. ....-..+|+.|.. .+||||||..+... .+..+-.+|++.
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-------------------~Q~kLl~~le~g 200 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-------------------GQEKLLRVLEEG 200 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-------------------HHHHHHHHHHcC
Confidence 5322 21 12223345665543 49999999997643 233344455442
Q ss_pred c-----CC-cCCCeEEEEEecCCCCcCCccccC-CCccc--eEEeccCCChhhHHH----HHHHH----hcccccCCccC
Q 002307 564 D-----GF-DTGKGVIFLAATNRRDLLDPALLR-PGRFD--RKIRIRAPNAKGRTE----ILKIH----ASKVKMSDSVD 626 (938)
Q Consensus 564 D-----g~-~~~~~ViVIAATN~pd~LDpALlR-pGRFd--r~I~V~lPd~eeR~e----ILr~~----l~~~~l~~dvd 626 (938)
. +- ....+|.+|+|||. .++.+++. ..-+. ..+.|.+|+..+|.. +++++ +++++.....+
T Consensus 201 ~~~rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~ 278 (403)
T COG1221 201 EYRRVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVD 278 (403)
T ss_pred ceEecCCCCCcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 10 12356899999984 33333332 01111 134556677777644 33443 34444432222
Q ss_pred H----HHH-HhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 627 L----SSY-AKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 627 L----~~L-A~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
. ..+ +-..+| +.++|+|+|..++..+.
T Consensus 279 ~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 279 SPEALRALLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred CHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 2 222 223566 78999999999998873
No 172
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=3.3e-09 Score=120.65 Aligned_cols=187 Identities=19% Similarity=0.204 Sum_probs=123.5
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCE-------E----
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------Y---- 487 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pf-------i---- 487 (938)
..+.++++|+|++.+++.|.+.+.. .+.|+.+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4566899999999999999877653 35677899999999999999999999763210 0
Q ss_pred --E-E-eCchhHHH---------Hh-----h--------hhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCcc
Q 002307 488 --Q-M-AGSEFVEV---------LV-----G--------VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIF 537 (938)
Q Consensus 488 --~-v-s~sel~~~---------~v-----G--------~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~ 537 (938)
. . .|...... ++ + .....+|++...+. ...|.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0 0 11110000 00 1 12344666655443 34567999999998632
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhc
Q 002307 538 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (938)
Q Consensus 538 ~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~ 617 (938)
...|.||..++ ..+.+.++|.+|+.++.+.+.+++ |+ ..+.+++|+.++-.+++.....
T Consensus 156 ----------------~aanaLLK~LE--epp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 156 ----------------NAANALLKVLE--EPPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGP 214 (365)
T ss_pred ----------------HHHHHHHHHHh--cCCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcc
Confidence 34566777776 344566777788888889888877 64 6889999999999988887642
Q ss_pred ccccCCccCHHHHHhhCCCCCHHHHHHHHH
Q 002307 618 KVKMSDSVDLSSYAKNLPGWTGARLAQLVQ 647 (938)
Q Consensus 618 ~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~ 647 (938)
. ..+..+..+++.+.| ++....++++
T Consensus 215 ~---~~~~~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 215 D---LPDDPRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred c---CCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 2 111123456666766 5655555543
No 173
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.06 E-value=1.9e-09 Score=127.93 Aligned_cols=208 Identities=17% Similarity=0.291 Sum_probs=126.8
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~ 496 (938)
...+|++++|.+...+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 456899999999988887777665432 23469999999999999999997654 57999999987644
Q ss_pred HH-----hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc
Q 002307 497 VL-----VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 564 (938)
Q Consensus 497 ~~-----vG~~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD 564 (938)
.. .|... .....+|+.|. ...|||||||.+... .+..+.+++..-.
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~-------------------~Q~~Ll~~l~~~~ 326 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPR-------------------MQAKLLRFLNDGT 326 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHH-------------------HHHHHHHHHhcCC
Confidence 22 22111 01123455433 458999999997643 2233444443311
Q ss_pred --CC----cCCCeEEEEEecCCCC-------cCCccccCCCccceEEeccCCChhhHHH----HHHHHhcc----cccC-
Q 002307 565 --GF----DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASK----VKMS- 622 (938)
Q Consensus 565 --g~----~~~~~ViVIAATN~pd-------~LDpALlRpGRFdr~I~V~lPd~eeR~e----ILr~~l~~----~~l~- 622 (938)
.. ....++.||+||+.+- .+.+.|.. |+. .+.+..|+..+|.+ ++++++.. .+..
T Consensus 327 ~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~ 403 (520)
T PRK10820 327 FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPR 403 (520)
T ss_pred cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCC
Confidence 00 1123578888887632 12333333 443 46777788887764 33333332 2211
Q ss_pred CccC---HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhH
Q 002307 623 DSVD---LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDM 666 (938)
Q Consensus 623 ~dvd---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl 666 (938)
..++ +..|.+. ++| +.++|++++.+|+..+ ....|+.+|+
T Consensus 404 ~~ls~~a~~~L~~y~WPG-NvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 404 PKLAADLNTVLTRYGWPG-NVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred CCcCHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 1233 3334333 455 7789999999888765 4456777765
No 174
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.06 E-value=9.6e-11 Score=122.64 Aligned_cols=143 Identities=28% Similarity=0.395 Sum_probs=68.5
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc--------------------
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------------------- 482 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------------------- 482 (938)
+|+||+|++.+|..|.-... .++++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999999865432 24699999999999999999998822
Q ss_pred --------CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHH
Q 002307 483 --------GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 554 (938)
Q Consensus 483 --------g~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~ 554 (938)
..||.....+.-...++|.+....-..+..|.. .||||||+-.+. ..
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef~----------------------~~ 121 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEFD----------------------RS 121 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS-----------------------HH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhcC----------------------HH
Confidence 234444443333333444433222233444433 499999997753 23
Q ss_pred HHHHHHHHhcCC-----------cCCCeEEEEEecCCC-----------------------CcCCccccCCCccceEEec
Q 002307 555 TLNQLLIELDGF-----------DTGKGVIFLAATNRR-----------------------DLLDPALLRPGRFDRKIRI 600 (938)
Q Consensus 555 ~LnqLL~eLDg~-----------~~~~~ViVIAATN~p-----------------------d~LDpALlRpGRFdr~I~V 600 (938)
+++.|++-|+.- .-+.++++|+|+|.- ..+...++. |||.++.+
T Consensus 122 vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~ 199 (206)
T PF01078_consen 122 VLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEV 199 (206)
T ss_dssp HHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------
T ss_pred HHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccc
Confidence 455555555321 113457899998841 134556665 77777776
Q ss_pred cCCChh
Q 002307 601 RAPNAK 606 (938)
Q Consensus 601 ~lPd~e 606 (938)
+..+.+
T Consensus 200 ~~~~~~ 205 (206)
T PF01078_consen 200 PRVSYE 205 (206)
T ss_dssp ------
T ss_pred cccccC
Confidence 655443
No 175
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.03 E-value=2.3e-09 Score=126.90 Aligned_cols=196 Identities=23% Similarity=0.325 Sum_probs=121.3
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH-
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL- 498 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~- 498 (938)
++.+++|.+..++.+.+.+..+.. .+.+|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 578899999999999888876532 34589999999999999999998864 6799999998764422
Q ss_pred ----hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc--C
Q 002307 499 ----VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--G 565 (938)
Q Consensus 499 ----vG~~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD--g 565 (938)
.|... ......|+.| ...+|||||||.+... .+..+..+++.-. .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-------------------~Q~~Ll~~l~~~~~~~ 312 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-------------------LQAKLLRVLQYGEIQR 312 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-------------------HHHHHHHHHhcCCEee
Confidence 22110 0011234443 3458999999998643 2223333443211 0
Q ss_pred C----cCCCeEEEEEecCCCC-------cCCccccCCCccceEEeccCCChhhHHH----HHHHHhcccc----c-CCcc
Q 002307 566 F----DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKVK----M-SDSV 625 (938)
Q Consensus 566 ~----~~~~~ViVIAATN~pd-------~LDpALlRpGRFdr~I~V~lPd~eeR~e----ILr~~l~~~~----l-~~dv 625 (938)
. ....++.+|++||..- .+.+.|.. |+. .+.|.+|+..+|.+ ++++++.... . ...+
T Consensus 313 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~ 389 (509)
T PRK05022 313 VGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRL 389 (509)
T ss_pred CCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 0 1123678999998632 12222222 332 45677788888755 3344443321 1 1223
Q ss_pred C---HHHHHhh-CCCCCHHHHHHHHHHHHHHHH
Q 002307 626 D---LSSYAKN-LPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 626 d---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
+ +..|... ++| +.++|++++++|+..+.
T Consensus 390 s~~a~~~L~~y~WPG-NvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 390 SPAAQAALLAYDWPG-NVRELEHVISRAALLAR 421 (509)
T ss_pred CHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhcC
Confidence 3 3333333 455 78999999999998874
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.03 E-value=4.5e-09 Score=123.64 Aligned_cols=213 Identities=23% Similarity=0.297 Sum_probs=130.4
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC------------------
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG------------------ 483 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg------------------ 483 (938)
.+|+++.|+..+++.+. +.+.....++|+||||||||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al~--------------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLE--------------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhh--------------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 48899999988766642 2234557899999999999999999987431
Q ss_pred ----------CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHH
Q 002307 484 ----------VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 553 (938)
Q Consensus 484 ----------~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~ 553 (938)
.||.....+.-...++|.+...-...+..|.. .+|||||++.+... ..
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~~~-------------------~~ 311 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFERR-------------------TL 311 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCCHH-------------------HH
Confidence 12222211111122344333223345666554 49999999885432 22
Q ss_pred HHHHHHHHHhc----C----CcCCCeEEEEEecCCCC---------------------cCCccccCCCccceEEeccCCC
Q 002307 554 TTLNQLLIELD----G----FDTGKGVIFLAATNRRD---------------------LLDPALLRPGRFDRKIRIRAPN 604 (938)
Q Consensus 554 ~~LnqLL~eLD----g----~~~~~~ViVIAATN~pd---------------------~LDpALlRpGRFdr~I~V~lPd 604 (938)
..+.+.++.-. . .....++.+|+|+|... .+..++++ |||.++.++.|+
T Consensus 312 ~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~ 389 (506)
T PRK09862 312 DALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPP 389 (506)
T ss_pred HHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCC
Confidence 33333332211 0 01235689999999742 46778888 999999999875
Q ss_pred hh----------hHHHHHHHHh--------cccccCCccC---H----------H---HHHhhCCCCCHHHHHHHHHHHH
Q 002307 605 AK----------GRTEILKIHA--------SKVKMSDSVD---L----------S---SYAKNLPGWTGARLAQLVQEAA 650 (938)
Q Consensus 605 ~e----------eR~eILr~~l--------~~~~l~~dvd---L----------~---~LA~~t~GfSgaDL~~Lv~eA~ 650 (938)
.+ ....|-+... ++..+...+. + . +-+....|.|.+....+++-|.
T Consensus 390 ~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvAR 469 (506)
T PRK09862 390 PGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVAR 469 (506)
T ss_pred HHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32 1111211100 0001111111 1 1 1122345789999999999999
Q ss_pred HHHHHhCCcccchhhHHHHHHh
Q 002307 651 LVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 651 l~A~r~~~~~It~edl~~Ai~r 672 (938)
..|.-++++.|+.+|+.+|+.-
T Consensus 470 TiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 470 TIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHcCCCCCCHHHHHHHHHh
Confidence 9999999999999999999863
No 177
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.01 E-value=1.6e-08 Score=111.35 Aligned_cols=217 Identities=18% Similarity=0.242 Sum_probs=135.0
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCch--
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE-- 493 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~se-- 493 (938)
+.-+|+..+++.|..+-+.+..|.. ....++||+|++|.|||++++.+++.. .+|++.+.+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 3358999999999888888888853 234479999999999999999998743 36888886532
Q ss_pred ----hHHHHh---hh-------hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHH
Q 002307 494 ----FVEVLV---GV-------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 559 (938)
Q Consensus 494 ----l~~~~v---G~-------~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqL 559 (938)
|..... |. ....-.......+...+.+|+|||++.+...+ .......+ .+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs---------------~~~qr~~L-n~ 171 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS---------------YRKQREFL-NA 171 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc---------------HHHHHHHH-HH
Confidence 222211 11 11122233455566788899999999975321 11122222 23
Q ss_pred HHHhcCCcCCCeEEEEEecCCCC--cCCccccCCCccceEEeccCC-ChhhHHHHHHHHhcccccCCc--cCH----HHH
Q 002307 560 LIELDGFDTGKGVIFLAATNRRD--LLDPALLRPGRFDRKIRIRAP-NAKGRTEILKIHASKVKMSDS--VDL----SSY 630 (938)
Q Consensus 560 L~eLDg~~~~~~ViVIAATN~pd--~LDpALlRpGRFdr~I~V~lP-d~eeR~eILr~~l~~~~l~~d--vdL----~~L 630 (938)
|..+. -.-.-.++.+++..-.+ .-|+.+-+ ||+ .+.++.- .-++-..++..+-...++... ..- ..+
T Consensus 172 LK~L~-NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i 247 (302)
T PF05621_consen 172 LKFLG-NELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRI 247 (302)
T ss_pred HHHHh-hccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 33331 11112344444322222 34667766 887 3444442 223455577776666665422 222 345
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~ 668 (938)
-..+.| +-+++.++++.|+..|++.|.+.|+.+.++.
T Consensus 248 ~~~s~G-~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 248 HERSEG-LIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHcCC-chHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 566777 4569999999999999999999999988776
No 178
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.01 E-value=1.5e-09 Score=130.66 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=68.0
Q ss_pred CeEEEEEecCCC--CcCCccccCCCccc---eEEecc--CCC-hhhHHHHHHHHhc---ccccCCccC---HHHHH---h
Q 002307 570 KGVIFLAATNRR--DLLDPALLRPGRFD---RKIRIR--APN-AKGRTEILKIHAS---KVKMSDSVD---LSSYA---K 632 (938)
Q Consensus 570 ~~ViVIAATN~p--d~LDpALlRpGRFd---r~I~V~--lPd-~eeR~eILr~~l~---~~~l~~dvd---L~~LA---~ 632 (938)
-++.+|+++|.. ..+++++++ ||+ ..+.++ .|+ .+.|.++.+...+ +.+..+.++ +..+. .
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 368899999974 578999998 998 656554 344 4555555444332 221122333 22222 1
Q ss_pred hCC------CCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 633 NLP------GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 633 ~t~------GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
+.. ..+.++|.+++++|...|..+++..|+.+|+.+|++...
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 111 245799999999998888888888999999999987543
No 179
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=6.2e-09 Score=115.77 Aligned_cols=169 Identities=15% Similarity=0.252 Sum_probs=114.6
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------EEEEeCchh
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------FYQMAGSEF 494 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p--------fi~vs~sel 494 (938)
+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 689999999999998777632 2456788999999999999999999976332 22222210
Q ss_pred HHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCC
Q 002307 495 VEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~ 570 (938)
+ ...+...+|++.+.+.. ....|++||++|.+.. ...|.||..++ +++.
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~----------------------~a~naLLK~LE--epp~ 122 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE----------------------QAQNAFLKTIE--EPPK 122 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH----------------------HHHHHHHHHhc--CCCC
Confidence 0 11123456776664432 2345999999988632 23567777777 3455
Q ss_pred eEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCC
Q 002307 571 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 636 (938)
Q Consensus 571 ~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~G 636 (938)
++++|.+|+.++.+.+.+++ |. ..+++..|+.++....++...... ....+..++..+.|
T Consensus 123 ~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g 182 (313)
T PRK05564 123 GVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDG 182 (313)
T ss_pred CeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCC
Confidence 66666666778999999988 65 589999999998888777655321 12234556666655
No 180
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.99 E-value=1.3e-08 Score=109.99 Aligned_cols=130 Identities=25% Similarity=0.300 Sum_probs=89.2
Q ss_pred CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCC-------------CCc
Q 002307 517 KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-------------RDL 583 (938)
Q Consensus 517 ~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~-------------pd~ 583 (938)
-|.||||||++.|- - ..+..|-..++ ++-.-+||.|||+ |..
T Consensus 296 vPGVLFIDEVhMLD-------------------i---EcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhG 350 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-------------------I---ECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHG 350 (456)
T ss_pred cCcceEeeehhhhh-------------------h---HHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCC
Confidence 57899999998752 1 22333333333 2223356667775 345
Q ss_pred CCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 002307 584 LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESIL 662 (938)
Q Consensus 584 LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It 662 (938)
+++.|+. |+ .+|..-+.+.++-++|++.+.+...+.-+ ..+..++.....-|-+-..+|+.-|...|...+++.|.
T Consensus 351 ip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~ 427 (456)
T KOG1942|consen 351 IPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEIS 427 (456)
T ss_pred CCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceee
Confidence 6666665 54 35556677888999999998876665533 23666777766667788888888888999889999999
Q ss_pred hhhHHHHHHhhc
Q 002307 663 SSDMDDAVDRLT 674 (938)
Q Consensus 663 ~edl~~Ai~rv~ 674 (938)
.+|++++-+-..
T Consensus 428 v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 428 VEDVEEVTELFL 439 (456)
T ss_pred cccHHHHHHHHH
Confidence 999998866543
No 181
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.99 E-value=3.4e-10 Score=110.33 Aligned_cols=113 Identities=35% Similarity=0.416 Sum_probs=70.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH--HHhhhhhHH------HHHHHHHHHhCCCeEEEEcCcchhhh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE--VLVGVGSAR------IRDLFKRAKVNKPSVIFIDEIDALAT 531 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~--~~vG~~~~~------vr~lF~~Ar~~~P~ILfIDEIDaL~~ 531 (938)
+|+|+||||||||++|+.+|..++.+++.++++...+ .+.|.-.-. ....+..|. ..++|++||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 5899999999999999999999999999998876433 222221100 000011111 157899999999843
Q ss_pred hhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC-------Cc-CCC------eEEEEEecCCCC----cCCccccCCCc
Q 002307 532 RRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-------FD-TGK------GVIFLAATNRRD----LLDPALLRPGR 593 (938)
Q Consensus 532 ~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg-------~~-~~~------~ViVIAATN~pd----~LDpALlRpGR 593 (938)
.+....++.++..-.- .. ... ++.+|+|+|..+ .+++++++ |
T Consensus 79 ------------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--R 138 (139)
T PF07728_consen 79 ------------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--R 138 (139)
T ss_dssp ------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T
T ss_pred ------------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--h
Confidence 2233444444443110 00 111 489999999988 89999998 8
Q ss_pred c
Q 002307 594 F 594 (938)
Q Consensus 594 F 594 (938)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 7
No 182
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.99 E-value=5.3e-09 Score=107.54 Aligned_cols=144 Identities=19% Similarity=0.266 Sum_probs=96.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCC------------------------EEEEeCchhHHHHhhhhhHHHHHHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 511 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~p------------------------fi~vs~sel~~~~vG~~~~~vr~lF~ 511 (938)
+.++.+||+||+|+|||++|+++++.+.+. +..+.... ...+...++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 456789999999999999999999987432 12211110 0112345666666
Q ss_pred HHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCcc
Q 002307 512 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (938)
Q Consensus 512 ~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpA 587 (938)
.+.. ....|++|||+|.+... ..+.||..++. .+...++|.+||.++.+.++
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~----------------------~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA----------------------AANALLKTLEE--PPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH----------------------HHHHHHHHhcC--CCCCeEEEEEECChHhChHH
Confidence 6543 34469999999987432 24567777764 33455555667777899999
Q ss_pred ccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCC
Q 002307 588 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 636 (938)
Q Consensus 588 LlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~G 636 (938)
+.+ |. ..+.+.+|+.++..++++.. ++. +..+..++..+.|
T Consensus 143 i~s--r~-~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 143 IRS--RC-QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred HHh--hc-EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 988 66 58999999999998888776 222 2235555555544
No 183
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.98 E-value=6e-09 Score=127.56 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=122.2
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 497 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~ 497 (938)
+.+|++++|.+..++.+.+.+..+.. ...+|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 45789999999999998887776432 23479999999999999999998754 679999999865332
Q ss_pred -----Hhhhh-------hHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc-
Q 002307 498 -----LVGVG-------SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD- 564 (938)
Q Consensus 498 -----~vG~~-------~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD- 564 (938)
+.|.. .......|+.| ...+|||||||.+... .+..+..++..-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~~~-------------------~Q~~L~~~l~~~~~ 499 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMPLE-------------------LQPKLLRVLQEQEF 499 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCCHH-------------------HHHHHHHHHHhCCE
Confidence 22211 01112334443 3469999999997543 2233333443311
Q ss_pred -CC----cCCCeEEEEEecCCCC--cCCccccCCC---ccceEEeccCCChhhHHH----HHHHHhccc----ccC-Ccc
Q 002307 565 -GF----DTGKGVIFLAATNRRD--LLDPALLRPG---RFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS-DSV 625 (938)
Q Consensus 565 -g~----~~~~~ViVIAATN~pd--~LDpALlRpG---RFdr~I~V~lPd~eeR~e----ILr~~l~~~----~l~-~dv 625 (938)
.. ....++.+|++|+..- .+....+++. |+. .+.|..|+..+|.+ ++++++.+. +.. ..+
T Consensus 500 ~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~ 578 (686)
T PRK15429 500 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSI 578 (686)
T ss_pred EeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 00 1124688999998632 2222222211 221 56677888888866 344544332 111 112
Q ss_pred C---HHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 002307 626 D---LSSYAKN-LPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 626 d---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A 653 (938)
+ +..|.+. ++| +.++|++++++|+..+
T Consensus 579 s~~al~~L~~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 579 PAETLRTLSNMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred CHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhC
Confidence 2 3333333 455 7899999999998765
No 184
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.97 E-value=5e-09 Score=125.93 Aligned_cols=190 Identities=20% Similarity=0.245 Sum_probs=123.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCchhHHHHhhhhhHHHHHHHHHH---------HhCCCeEEEEcCcc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGSARIRDLFKRA---------KVNKPSVIFIDEID 527 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sel~~~~vG~~~~~vr~lF~~A---------r~~~P~ILfIDEID 527 (938)
.+|||.|+||||||++|++++..+. .||+.+......+.+.|.. .+...+... ......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 4799999999999999999999774 4798887643334344431 111111000 01223599999999
Q ss_pred hhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC---------C--cCCCeEEEEEecCCCC---cCCccccCCCc
Q 002307 528 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG---------F--DTGKGVIFLAATNRRD---LLDPALLRPGR 593 (938)
Q Consensus 528 aL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg---------~--~~~~~ViVIAATN~pd---~LDpALlRpGR 593 (938)
.+... +.+.|+..|+. . ..+.++.||||+|..+ .+.++|+. |
T Consensus 95 rl~~~----------------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--R 150 (589)
T TIGR02031 95 LLDDG----------------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--R 150 (589)
T ss_pred hCCHH----------------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--h
Confidence 97543 22334444431 1 1124688999999865 78899998 9
Q ss_pred cceEEecc-CCChhhHHHHHHHHhcccc-------------------cCCcc-----CHHHHHhh--CCCCC-HHHHHHH
Q 002307 594 FDRKIRIR-APNAKGRTEILKIHASKVK-------------------MSDSV-----DLSSYAKN--LPGWT-GARLAQL 645 (938)
Q Consensus 594 Fdr~I~V~-lPd~eeR~eILr~~l~~~~-------------------l~~dv-----dL~~LA~~--t~GfS-gaDL~~L 645 (938)
|+.++.+. +|+.++|.+|++.+..... ....+ .+..++.. ..|.+ .+....+
T Consensus 151 f~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~ 230 (589)
T TIGR02031 151 LALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFA 230 (589)
T ss_pred ccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHH
Confidence 99988775 4677889999887652110 00111 11222222 12333 4556677
Q ss_pred HHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 646 VQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 646 v~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
++-|...|.-++++.|+.+|+..|+.-++
T Consensus 231 ~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 231 VRAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 88899999999999999999999988776
No 185
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.94 E-value=7.3e-09 Score=119.58 Aligned_cols=159 Identities=26% Similarity=0.373 Sum_probs=89.1
Q ss_pred cCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-----C--EEEEeC----c
Q 002307 424 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----P--FYQMAG----S 492 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~-----p--fi~vs~----s 492 (938)
++++.+-++..+.+... +. ..++++|+||||||||++|+++|..+.. + .+.++. .
T Consensus 174 l~d~~i~e~~le~l~~~---L~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKR---LT-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHH---Hh-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 67777777765555333 22 2458999999999999999999998743 1 233332 2
Q ss_pred hhHHHH--hhhhh----HHHHHHHHHHHhC--CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH--
Q 002307 493 EFVEVL--VGVGS----ARIRDLFKRAKVN--KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE-- 562 (938)
Q Consensus 493 el~~~~--vG~~~----~~vr~lF~~Ar~~--~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e-- 562 (938)
+++..+ .+.+- ..+..++..|+.. .|+|||||||+.....+- ++.. -.+.........-.+.....+
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ki--FGel-~~lLE~~~rg~~~~v~l~y~e~d 316 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKV--FGEV-MMLMEHDKRGENWSVPLTYSEND 316 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHh--hhhh-hhhccccccccccceeeeccccc
Confidence 333222 11111 1234455666543 589999999998543320 0000 000000000000000000011
Q ss_pred hcCCcCCCeEEEEEecCCCC----cCCccccCCCccceEEeccC
Q 002307 563 LDGFDTGKGVIFLAATNRRD----LLDPALLRPGRFDRKIRIRA 602 (938)
Q Consensus 563 LDg~~~~~~ViVIAATN~pd----~LDpALlRpGRFdr~I~V~l 602 (938)
.+.+..+.++.||||+|..+ .+|.|++| ||. .|++.+
T Consensus 317 ~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 317 EERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred cccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 12356678999999999988 79999999 995 455653
No 186
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=2.2e-08 Score=111.77 Aligned_cols=183 Identities=16% Similarity=0.233 Sum_probs=121.2
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC-----------------
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------- 485 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p----------------- 485 (938)
.|++|+|++++++.|.+.+.. .+.++..||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999888753 2456789999999999999999999976321
Q ss_pred -EEEEeCc------hhHHH---Hhh--------hhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchh
Q 002307 486 -FYQMAGS------EFVEV---LVG--------VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDH 543 (938)
Q Consensus 486 -fi~vs~s------el~~~---~vG--------~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~ 543 (938)
++.+... ..... ..| .....+|++...+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1111110 00000 001 112345666555432 2346999999998642
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC
Q 002307 544 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD 623 (938)
Q Consensus 544 ~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~ 623 (938)
...|.||..|+. ++ +.++|..|+.++.|-|.+++ |. ..+.|++|+.++..++|........ .
T Consensus 139 ----------~aaNaLLK~LEE--Pp-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~ 200 (314)
T PRK07399 139 ----------AAANALLKTLEE--PG-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--L 200 (314)
T ss_pred ----------HHHHHHHHHHhC--CC-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--c
Confidence 235677777764 33 33556677788999999998 74 6899999999999998887643211 1
Q ss_pred ccCHHHHHhhCCCCCHHHHHHHHH
Q 002307 624 SVDLSSYAKNLPGWTGARLAQLVQ 647 (938)
Q Consensus 624 dvdL~~LA~~t~GfSgaDL~~Lv~ 647 (938)
+.+...++....| +++...++++
T Consensus 201 ~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 201 NINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHH
Confidence 1224677777777 6666655554
No 187
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.93 E-value=1.6e-08 Score=119.75 Aligned_cols=172 Identities=22% Similarity=0.292 Sum_probs=110.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHH----HhCCCeEEEEcCcchhhhhhc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDALATRRQ 534 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~A----r~~~P~ILfIDEIDaL~~~r~ 534 (938)
+-+||+||||-|||+||+.+|+++|..++.+++|+-... ..-..++..+...- ....|..|+|||||--.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~---- 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP---- 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc----
Confidence 468899999999999999999999999999999874331 11122222222221 12568889999999632
Q ss_pred CccCCcchhhhhhhhHHHHHHHHHHHHH----hcCCcCC---------C---eEEEEEecCCCCcCCccccCCCccceEE
Q 002307 535 GIFKDTTDHLYNAATQERETTLNQLLIE----LDGFDTG---------K---GVIFLAATNRRDLLDPALLRPGRFDRKI 598 (938)
Q Consensus 535 ~~~~~~~~~~~~~~~~e~~~~LnqLL~e----LDg~~~~---------~---~ViVIAATN~pd~LDpALlRpGRFdr~I 598 (938)
.....++..++.. ..|-... . .--|||.|| +..-|+|+.---|..+|
T Consensus 401 ---------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN--dLYaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 401 ---------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN--DLYAPALRPLRPFAEII 463 (877)
T ss_pred ---------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec--CccchhhhhcccceEEE
Confidence 1122223333321 1111110 0 135777788 45556765322488899
Q ss_pred eccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 002307 599 RIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 657 (938)
Q Consensus 599 ~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~ 657 (938)
.|.+|...-..+-|+..+...++..+ ..+..|+..+.+ ||++.+|....+|....
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNVD 519 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhcc
Confidence 99999998888888888877666533 235556665544 99999999888876543
No 188
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1e-09 Score=125.78 Aligned_cols=210 Identities=25% Similarity=0.332 Sum_probs=126.0
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc------------------
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------------------ 482 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el------------------ 482 (938)
..+|.||+|++.+|..|... +...+++|++||||||||++|+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiA--------------AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIA--------------AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHH--------------HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 56899999999999999654 3456799999999999999999987622
Q ss_pred -----------CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 483 -----------GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 483 -----------g~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
..||..-..+.-....+|.+...--.-+..|. ..||||||+-.+-
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef~--------------------- 296 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEFK--------------------- 296 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchhh---------------------
Confidence 11222222222222333333111111112222 2499999986642
Q ss_pred HHHHHHHHHHHhcCC-----------cCCCeEEEEEecCCCC-----------------------cCCccccCCCccceE
Q 002307 552 RETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-----------------------LLDPALLRPGRFDRK 597 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~-----------~~~~~ViVIAATN~pd-----------------------~LDpALlRpGRFdr~ 597 (938)
.++++.|.+-|+.- .-..++..|+|+|..- .+...+++ |+|..
T Consensus 297 -~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~ 373 (490)
T COG0606 297 -RSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLM 373 (490)
T ss_pred -HHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhhe
Confidence 24566665555421 1123467888888521 24445666 99999
Q ss_pred EeccCCChhhH--------------HHHHHHHh----ccccc--C----------------CccCHHHHHhhCCCCCHHH
Q 002307 598 IRIRAPNAKGR--------------TEILKIHA----SKVKM--S----------------DSVDLSSYAKNLPGWTGAR 641 (938)
Q Consensus 598 I~V~lPd~eeR--------------~eILr~~l----~~~~l--~----------------~dvdL~~LA~~t~GfSgaD 641 (938)
++++.++..++ ..+.+.+- +..+. . .+.++.+.+-..-++|.+.
T Consensus 374 vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~ 453 (490)
T COG0606 374 VEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARA 453 (490)
T ss_pred ecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHH
Confidence 99988764322 22222111 11111 1 1112233344455778888
Q ss_pred HHHHHHHHHHHHHHhCCcccchhhHHHHHH
Q 002307 642 LAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 642 L~~Lv~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
...+++-|..+|.-++.+.|...|+.+|+.
T Consensus 454 ~~rILKvarTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 454 YHRILKVARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HHHHHHHHhhhhcccCcchhhHHHHHHHHh
Confidence 888888888888888888888888888875
No 189
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.90 E-value=2.6e-08 Score=120.08 Aligned_cols=205 Identities=13% Similarity=0.198 Sum_probs=117.9
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE-Ee---C
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ-MA---G 491 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~-vs---~ 491 (938)
.+.-.+.+++||+|+++.+++++.++..... +..+.+.++|+||||||||++++++|++++..+.. .+ |
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 3445678899999999998888877654321 23344569999999999999999999988765432 11 1
Q ss_pred chhH----------HH--HhhhhhHHHHHHHHHHHh----------CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhh
Q 002307 492 SEFV----------EV--LVGVGSARIRDLFKRAKV----------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (938)
Q Consensus 492 sel~----------~~--~vG~~~~~vr~lF~~Ar~----------~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~ 549 (938)
.... .. ........++.++..|.. ....|||||||+.+... .
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r---------------~- 211 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR---------------D- 211 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---------------h-
Confidence 0000 00 001123344555555542 24569999999986532 1
Q ss_pred HHHHHHHHHHHH-HhcCCcCCCeEEEEEecCCCC--------------cCCccccCCCccceEEeccCCChhhHHHHHHH
Q 002307 550 QERETTLNQLLI-ELDGFDTGKGVIFLAATNRRD--------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 614 (938)
Q Consensus 550 ~e~~~~LnqLL~-eLDg~~~~~~ViVIAATN~pd--------------~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~ 614 (938)
...+..+|. .... ...-. +|+++|..+. .|.+++++..|. .+|.|.+.......+.|+.
T Consensus 212 ---~~~lq~lLr~~~~e-~~~~p-LI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~r 285 (637)
T TIGR00602 212 ---TRALHEILRWKYVS-IGRCP-LVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNR 285 (637)
T ss_pred ---HHHHHHHHHHHhhc-CCCce-EEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHH
Confidence 112333443 1111 11122 3333332221 133667642243 3789999999997777777
Q ss_pred Hhccccc--CC------ccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 615 HASKVKM--SD------SVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 615 ~l~~~~l--~~------dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
.+..... .. ...+..++....| |++.+++.-...+
T Consensus 286 Il~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~ 328 (637)
T TIGR00602 286 IVTIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSS 328 (637)
T ss_pred HHHhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHH
Confidence 7654321 11 1235666665555 7777777655544
No 190
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.90 E-value=3.5e-08 Score=108.62 Aligned_cols=149 Identities=28% Similarity=0.389 Sum_probs=98.1
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC----------------------
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------------------- 483 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg---------------------- 483 (938)
+++|.+++...+...+..- .+.|+.+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 5677777777666554421 13455799999999999999999999886
Q ss_pred --CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 484 --VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 484 --~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
-.++.++.++.... ......++.+-..... ...-|++|||+|.+.. ...|
T Consensus 72 ~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----------------------~A~n 127 (325)
T COG0470 72 NHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----------------------DAAN 127 (325)
T ss_pred CCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH----------------------HHHH
Confidence 34566665543221 1123345554444322 2346999999999753 2345
Q ss_pred HHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHH
Q 002307 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILK 613 (938)
Q Consensus 558 qLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr 613 (938)
.++..++ ....+..+|.+||.++.+-+.+++ | +..+.|++|+...+....+
T Consensus 128 allk~lE--ep~~~~~~il~~n~~~~il~tI~S--R-c~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 128 ALLKTLE--EPPKNTRFILITNDPSKILPTIRS--R-CQRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred HHHHHhc--cCCCCeEEEEEcCChhhccchhhh--c-ceeeecCCchHHHHHHHhh
Confidence 6666665 455677888889999999888887 6 4577887755544443333
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.7e-08 Score=115.83 Aligned_cols=160 Identities=29% Similarity=0.467 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch-hHHHHhhhhhHHHHHHHHH
Q 002307 434 VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE-FVEVLVGVGSARIRDLFKR 512 (938)
Q Consensus 434 k~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se-l~~~~vG~~~~~vr~lF~~ 512 (938)
.++=..++.++++++. .+-.++||+||||+|||.||-.+|...+.||+.+-.++ .+...-...-..++..|+.
T Consensus 520 l~~G~llv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 520 LDDGKLLVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFED 593 (744)
T ss_pred HhhHHHHHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHH
Confidence 3333445666777764 34458999999999999999999999999999875443 3222222234568999999
Q ss_pred HHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-CCeEEEEEecCCCCcCCc-cccC
Q 002307 513 AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNRRDLLDP-ALLR 590 (938)
Q Consensus 513 Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-~~~ViVIAATN~pd~LDp-ALlR 590 (938)
|.+..-+||++|+|+.|..- .+.+......++..|+..+...++ ....+|++||.+.+.|.. .++.
T Consensus 594 AYkS~lsiivvDdiErLiD~------------vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~ 661 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDY------------VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD 661 (744)
T ss_pred hhcCcceEEEEcchhhhhcc------------cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH
Confidence 99998899999999998632 222333444555555555544333 346888888887665543 3444
Q ss_pred CCccceEEeccCCCh-hhHHHHHH
Q 002307 591 PGRFDRKIRIRAPNA-KGRTEILK 613 (938)
Q Consensus 591 pGRFdr~I~V~lPd~-eeR~eILr 613 (938)
.|+..|++|.-.. ++..+++.
T Consensus 662 --~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 662 --CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred --hhhheeecCccCchHHHHHHHH
Confidence 6888988876544 45555554
No 192
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.88 E-value=2.1e-08 Score=112.57 Aligned_cols=65 Identities=38% Similarity=0.612 Sum_probs=51.5
Q ss_pred cCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCchhH
Q 002307 424 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFV 495 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sel~ 495 (938)
.+.++|+.++.+..--+++.++... -.++++||.||||||||.||-++|+++| +||+.++++++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 4679999999999988888876543 3467999999999999999999999996 899999988765
No 193
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.87 E-value=9e-09 Score=105.10 Aligned_cols=122 Identities=26% Similarity=0.402 Sum_probs=78.5
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH-----H
Q 002307 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-----L 498 (938)
Q Consensus 427 VvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~-----~ 498 (938)
|+|.+..++++.+.+..+.. .+.+|||+|++||||+++|++|.+.. +.||+.++|+.+... +
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57888888888887776432 34589999999999999999998865 579999999876543 3
Q ss_pred hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc--CC---
Q 002307 499 VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GF--- 566 (938)
Q Consensus 499 vG~~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD--g~--- 566 (938)
.|... .....+|+.|... +||||||+.|... .+..+.++|+.-. ..
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~-------------------~Q~~Ll~~l~~~~~~~~g~~ 128 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPE-------------------LQAKLLRVLEEGKFTRLGSD 128 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HH-------------------HHHHHHHHHHHSEEECCTSS
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHH-------------------HHHHHHHHHhhchhcccccc
Confidence 33211 1123677776544 9999999998644 3344555555421 11
Q ss_pred -cCCCeEEEEEecCC
Q 002307 567 -DTGKGVIFLAATNR 580 (938)
Q Consensus 567 -~~~~~ViVIAATN~ 580 (938)
....++.||++|+.
T Consensus 129 ~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 129 KPVPVDVRIIASTSK 143 (168)
T ss_dssp SEEE--EEEEEEESS
T ss_pred ccccccceEEeecCc
Confidence 11236899999985
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.8e-09 Score=114.59 Aligned_cols=106 Identities=33% Similarity=0.474 Sum_probs=75.2
Q ss_pred ccCcHHHHHHHHHHHHH----hcCchhhhccCCCC-CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-HHhh
Q 002307 427 VAGIDEAVEELQELVRY----LKNPELFDKMGIKP-PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG 500 (938)
Q Consensus 427 VvG~deak~eL~eiV~~----Lk~pe~~~~lG~~~-p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-~~vG 500 (938)
|+|++.+|+.|.-.+-. +.+.+. .-.+.. ..+|||.||+|||||+||+.+|+.+++||-..++..+.+ .|+|
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~--~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKED--NDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCC--CCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 78999999988543321 221110 000111 247999999999999999999999999999999988876 4888
Q ss_pred hhhHHH-HHHHHHH----HhCCCeEEEEcCcchhhhhhc
Q 002307 501 VGSARI-RDLFKRA----KVNKPSVIFIDEIDALATRRQ 534 (938)
Q Consensus 501 ~~~~~v-r~lF~~A----r~~~P~ILfIDEIDaL~~~r~ 534 (938)
+..+++ ..++..| .+....||+|||||.++++..
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe 179 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE 179 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCC
Confidence 866654 3444443 223446999999999998754
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=98.85 E-value=3.3e-08 Score=121.94 Aligned_cols=170 Identities=21% Similarity=0.211 Sum_probs=123.1
Q ss_pred EEEEc--CCCchHHHHHHHHHHhc-----CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCC------CeEEEEcCcc
Q 002307 461 VLLEG--PPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNK------PSVIFIDEID 527 (938)
Q Consensus 461 VLL~G--PPGTGKT~LArALA~el-----g~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~------P~ILfIDEID 527 (938)
-+..| |++.|||++|+++|+++ +.+++.+++++..+ ...+|+++..+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45668 99999999999999997 56899999987422 235666665543322 2599999999
Q ss_pred hhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhh
Q 002307 528 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKG 607 (938)
Q Consensus 528 aL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~ee 607 (938)
.+... ..+.|+..|+. ...++.+|.+||.++.+.+++++ | +..+.|++|+.++
T Consensus 641 ~Lt~~----------------------AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--R-C~~i~F~~ls~~~ 693 (846)
T PRK04132 641 ALTQD----------------------AQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--R-CAIFRFRPLRDED 693 (846)
T ss_pred cCCHH----------------------HHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--h-ceEEeCCCCCHHH
Confidence 97432 24556666652 34678888899999999999998 7 4789999999999
Q ss_pred HHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHH
Q 002307 608 RTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 669 (938)
Q Consensus 608 R~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~A 669 (938)
-...|+..+.+.++. ++..+..++..+.| +.+..-++++.++.. ...|+.+++...
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 998888887765443 33457888888888 666666776655422 235666665544
No 196
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=8.1e-08 Score=107.91 Aligned_cols=149 Identities=20% Similarity=0.248 Sum_probs=104.6
Q ss_pred ccCcccC-cHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC----------------
Q 002307 423 KFSDVAG-IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---------------- 485 (938)
Q Consensus 423 ~F~dVvG-~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p---------------- 485 (938)
.|++|.| ++.+++.|...+.. .+.|+.+||+||+|+|||++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 88898888877642 3467788999999999999999999976332
Q ss_pred --------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHH
Q 002307 486 --------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 553 (938)
Q Consensus 486 --------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~ 553 (938)
+..+... + ...+...+|++.+.+.. ....|++|||+|.+..
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------------- 124 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------------- 124 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH----------------------
Confidence 1111110 0 01123456666655432 2335999999998642
Q ss_pred HHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHH
Q 002307 554 TTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 614 (938)
Q Consensus 554 ~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~ 614 (938)
...|.||..|+ ++++++++|.+|+.++.+.+++++ | ...+++.+|+.++..++|+.
T Consensus 125 ~a~NaLLK~LE--EPp~~~~~Il~t~~~~~ll~TIrS--R-c~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 125 SAANSLLKFLE--EPSGGTTAILLTENKHQILPTILS--R-CQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHHHHHhc--CCCCCceEEEEeCChHhCcHHHHh--h-ceeeeCCCCCHHHHHHHHHH
Confidence 24567888887 355677777788888899999988 6 46889999999887777753
No 197
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=3.7e-08 Score=110.67 Aligned_cols=157 Identities=21% Similarity=0.291 Sum_probs=105.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCC------------------------EEEEeCchhHHHHhhhhhHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLF 510 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~p------------------------fi~vs~sel~~~~vG~~~~~vr~lF 510 (938)
.+.++.+||+||+|+|||++|+++|+.+.+. ++.+...+- -...+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHH
Confidence 3567899999999999999999999977441 122211000 0012345677776
Q ss_pred HHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCc
Q 002307 511 KRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDP 586 (938)
Q Consensus 511 ~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDp 586 (938)
+.+.. ....|++||++|.+.. ...|.||..++ +++.++++|.+|+.++.+.|
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~----------------------~aaNaLLK~LE--EPp~~~~fiL~t~~~~~ll~ 151 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNR----------------------NAANALLKSLE--EPSGDTVLLLISHQPSRLLP 151 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCH----------------------HHHHHHHHHHh--CCCCCeEEEEEECChhhCcH
Confidence 65543 2345999999999742 34677888887 35567888889999999999
Q ss_pred cccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHH
Q 002307 587 ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 587 ALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~L 645 (938)
.+++ |.. .+.|++|+.++-.+.|...... ..+.+...+++...| ++.....+
T Consensus 152 TI~S--Rc~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~A~~l 203 (328)
T PRK05707 152 TIKS--RCQ-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLRALQL 203 (328)
T ss_pred HHHh--hce-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHHHHHH
Confidence 9998 864 6899999999888888765421 122234455666666 45444444
No 198
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.81 E-value=5.7e-09 Score=106.82 Aligned_cols=112 Identities=30% Similarity=0.398 Sum_probs=71.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCC----CEEEEeCchhHHHHhhhhhHHHHHHHHHH----HhCCCeEEEEcCcchh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGV----PFYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDAL 529 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~----pfi~vs~sel~~~~vG~~~~~vr~lF~~A----r~~~P~ILfIDEIDaL 529 (938)
-..+||.||+|||||.+|+++|..+.. +++.++++++... +.....+..++..+ ......||||||||.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 347899999999999999999999996 9999999988761 11111222222211 1111139999999998
Q ss_pred hhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC---------cCCCeEEEEEecCCCC
Q 002307 530 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---------DTGKGVIFLAATNRRD 582 (938)
Q Consensus 530 ~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~---------~~~~~ViVIAATN~pd 582 (938)
.+..+. ..+.......+.||..+|+- -.-+++++|+|+|.-.
T Consensus 81 ~~~~~~-----------~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSNSG-----------GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTTTT-----------CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccc-----------cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 875211 12233345556666665421 1125689999999644
No 199
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.78 E-value=4.1e-08 Score=113.77 Aligned_cols=206 Identities=19% Similarity=0.278 Sum_probs=123.1
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHh
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~v 499 (938)
.+.+++|.+...+.+.+.+..+.. ...+++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 456788988888877776654432 23479999999999999999998765 57999999987644322
Q ss_pred hh-----hh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc---
Q 002307 500 GV-----GS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--- 564 (938)
Q Consensus 500 G~-----~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD--- 564 (938)
.. .. ......|.. ....+||||||+.+... .+..+.+++..-.
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~~~-------------------~q~~l~~~l~~~~~~~ 264 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLPLN-------------------LQAKLLRFLQERVIER 264 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCCHH-------------------HHHHHHHHHhhCeEEe
Confidence 11 00 001112222 33569999999997643 2233334443311
Q ss_pred --CC-cCCCeEEEEEecCCCC-------cCCccccCCCccceEEeccCCChhhHHH----HHHHHhcccc----cC-Ccc
Q 002307 565 --GF-DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKVK----MS-DSV 625 (938)
Q Consensus 565 --g~-~~~~~ViVIAATN~pd-------~LDpALlRpGRFdr~I~V~lPd~eeR~e----ILr~~l~~~~----l~-~dv 625 (938)
+. ....++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ ++++++.... .. ..+
T Consensus 265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~ 341 (445)
T TIGR02915 265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGF 341 (445)
T ss_pred CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 00 0123578888887641 22333332 332 45677788888865 4444444321 11 122
Q ss_pred C---HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHH
Q 002307 626 D---LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 667 (938)
Q Consensus 626 d---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~ 667 (938)
+ +..|... ++| +.++|++++++|+..+ ....|+.+++.
T Consensus 342 ~~~a~~~L~~~~wpg-NvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 342 TDDALRALEAHAWPG-NVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred CHHHHHHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 2 3344433 345 7899999999998765 34567776653
No 200
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.77 E-value=5.2e-08 Score=113.71 Aligned_cols=209 Identities=21% Similarity=0.358 Sum_probs=126.0
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH-
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL- 498 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~- 498 (938)
.+.+++|.+...+.+.+.+..+.. ....++|+|++|||||++|+++.... +.||+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 456899999888888777665432 23479999999999999999998875 5799999998764322
Q ss_pred ----hhhhhH------H-HHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc---
Q 002307 499 ----VGVGSA------R-IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--- 564 (938)
Q Consensus 499 ----vG~~~~------~-vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD--- 564 (938)
.|.... . ....|.. .....|||||||.+... .+..+.+++..-.
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l~~~-------------------~q~~L~~~l~~~~~~~ 263 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDMPLD-------------------VQTRLLRVLADGQFYR 263 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccCCHH-------------------HHHHHHHHHhcCcEEe
Confidence 121100 0 0111222 23458999999997643 2233334443311
Q ss_pred --CC-cCCCeEEEEEecCCCC-------cCCccccCCCccceEEeccCCChhhHHH----HHHHHhcccc----cC-Ccc
Q 002307 565 --GF-DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKVK----MS-DSV 625 (938)
Q Consensus 565 --g~-~~~~~ViVIAATN~pd-------~LDpALlRpGRFdr~I~V~lPd~eeR~e----ILr~~l~~~~----l~-~dv 625 (938)
+. ....++.+|+||+..- .+.+.|.. ||. .+.+..|+..+|.+ ++++++.... .. ..+
T Consensus 264 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~ 340 (469)
T PRK10923 264 VGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLL 340 (469)
T ss_pred CCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCc
Confidence 00 1123578888887531 23344443 442 45666777777655 5555554321 11 112
Q ss_pred C---HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 626 D---LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 626 d---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+ +..|.+. ++| +.++|+++++++...+ ....|+.+|+...+
T Consensus 341 ~~~a~~~L~~~~wpg-Nv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 341 HPETEAALTRLAWPG-NVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred CHHHHHHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 2 3334333 445 7899999999998776 45678888875444
No 201
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.74 E-value=1.3e-07 Score=109.79 Aligned_cols=209 Identities=22% Similarity=0.355 Sum_probs=123.2
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH-
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL- 498 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~- 498 (938)
.+.+++|.+.....+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 456788888877777665554332 23479999999999999999997754 6799999998764432
Q ss_pred ----hhhhhH-------HHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc--C
Q 002307 499 ----VGVGSA-------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--G 565 (938)
Q Consensus 499 ----vG~~~~-------~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD--g 565 (938)
.|.... .....+.. ....+|||||||.+.... +..+..++..-. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~~-------------------q~~L~~~l~~~~~~~ 268 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLVL-------------------QAKLLRILQEREFER 268 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHHH-------------------HHHHHHHHhcCcEEe
Confidence 121100 00112222 234599999999986432 223333333211 0
Q ss_pred Cc----CCCeEEEEEecCCCCcCCccccCCCccce-------EEeccCCChhhHHH----HHHHHhccccc----C-Ccc
Q 002307 566 FD----TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKVKM----S-DSV 625 (938)
Q Consensus 566 ~~----~~~~ViVIAATN~pd~LDpALlRpGRFdr-------~I~V~lPd~eeR~e----ILr~~l~~~~l----~-~dv 625 (938)
.. ...++.+|++||..- . .+.+.|+|.. .+.+..|+..+|.+ +.++++.+... . ..+
T Consensus 269 ~~~~~~~~~~~rii~~t~~~l--~-~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~ 345 (457)
T PRK11361 269 IGGHQTIKVDIRIIAATNRDL--Q-AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDI 345 (457)
T ss_pred CCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCc
Confidence 00 123578899998632 1 2222233332 46677888888765 33444443211 1 122
Q ss_pred C---HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 626 D---LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 626 d---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+ +..+... ++| +.++|++++++|+..+ ....|+.+|+...+
T Consensus 346 ~~~a~~~L~~~~wpg-Nv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 346 DPMAMSLLTAWSWPG-NIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred CHHHHHHHHcCCCCC-cHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 2 2333333 345 7899999999988665 45578888876544
No 202
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.72 E-value=7.1e-08 Score=101.77 Aligned_cols=205 Identities=20% Similarity=0.294 Sum_probs=118.2
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-C----CCEEEE
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-G----VPFYQM 489 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-g----~pfi~v 489 (938)
.+++-.+..++||+|.++..+.|.-+...=.-| +++|.||||||||+-+.++|+++ | --++.+
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 445566788999999999999987775432222 58999999999999999999987 3 234566
Q ss_pred eCchhHHHHhhhhhHHHH---HHHHHHHhCCC----eEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH
Q 002307 490 AGSEFVEVLVGVGSARIR---DLFKRAKVNKP----SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (938)
Q Consensus 490 s~sel~~~~vG~~~~~vr---~lF~~Ar~~~P----~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e 562 (938)
++|+-. +-..+| ..|++-+..-| .||+|||+|++... .++.+.+..+.
T Consensus 85 NASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-------------------AQQAlRRtMEi 139 (333)
T KOG0991|consen 85 NASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-------------------AQQALRRTMEI 139 (333)
T ss_pred cCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-------------------HHHHHHHHHHH
Confidence 666422 222333 34555444333 49999999996432 22333332222
Q ss_pred hcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhCCCCCHHH
Q 002307 563 LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGAR 641 (938)
Q Consensus 563 LDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t~GfSgaD 641 (938)
. .+...+..++|..+.+-+.+.+ |.- .+.+...+..+-..-|....+..++.- +.-++.+.-...| |
T Consensus 140 y-----S~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----D 207 (333)
T KOG0991|consen 140 Y-----SNTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----D 207 (333)
T ss_pred H-----cccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----h
Confidence 1 2334566688888877777776 532 333333333333322222222222221 1124555544445 6
Q ss_pred HHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 642 LAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 642 L~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
.++.+|... +.-.+-..|+.+.+....
T Consensus 208 MRQalNnLQ--st~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 208 MRQALNNLQ--STVNGFGLVNQENVFKVC 234 (333)
T ss_pred HHHHHHHHH--HHhccccccchhhhhhcc
Confidence 666666543 333455666666554433
No 203
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.72 E-value=2.1e-07 Score=114.67 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=92.2
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchh-----------hhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCCE
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPEL-----------FDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPF 486 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~-----------~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------g~pf 486 (938)
..|.|++.+|+.+. +..+..... |....++...+|||+|+||||||.+|++++.-. |.++
T Consensus 450 P~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~ 527 (915)
T PTZ00111 450 PSIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSS 527 (915)
T ss_pred CeEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCC
Confidence 34789999887762 222221111 001224555689999999999999999999854 2455
Q ss_pred EEEeCchhHHHHhhh--hhHHH-HHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh
Q 002307 487 YQMAGSEFVEVLVGV--GSARI-RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (938)
Q Consensus 487 i~vs~sel~~~~vG~--~~~~v-r~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL 563 (938)
..+.+..... +.+. +...+ ...+.. ....+++|||+|.+... .+..+.+++.+-
T Consensus 528 s~vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms~~-------------------~Q~aLlEaMEqq 584 (915)
T PTZ00111 528 SSVGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCHNE-------------------SRLSLYEVMEQQ 584 (915)
T ss_pred ccccccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhCCHH-------------------HHHHHHHHHhCC
Confidence 5554443321 0110 00000 011111 22359999999997533 223333333221
Q ss_pred c------CC--cCCCeEEEEEecCCCC-------------cCCccccCCCccceEEe-ccCCChhhHHHHHHH
Q 002307 564 D------GF--DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIR-IRAPNAKGRTEILKI 614 (938)
Q Consensus 564 D------g~--~~~~~ViVIAATN~pd-------------~LDpALlRpGRFdr~I~-V~lPd~eeR~eILr~ 614 (938)
. |. .-+.++.||||+|... .|+++|++ |||..+- ++.|+.+.-..|-++
T Consensus 585 tIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 585 TVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred EEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 1 11 1235689999999742 57899999 9998754 466776655554333
No 204
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.71 E-value=1.3e-07 Score=114.22 Aligned_cols=100 Identities=23% Similarity=0.297 Sum_probs=64.2
Q ss_pred eEEEEEecCCC--CcCCccccCCCccc---eEEeccC--C-ChhhHHHHHHHHhcccc---cCCccC---HHHHHh---h
Q 002307 571 GVIFLAATNRR--DLLDPALLRPGRFD---RKIRIRA--P-NAKGRTEILKIHASKVK---MSDSVD---LSSYAK---N 633 (938)
Q Consensus 571 ~ViVIAATN~p--d~LDpALlRpGRFd---r~I~V~l--P-d~eeR~eILr~~l~~~~---l~~dvd---L~~LA~---~ 633 (938)
++.||+++|+. ..+||+|.. ||. ..+.++. + +.+.+..+++...+... ....++ +..+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57889999884 467888887 775 4455442 2 23445555554443221 112333 222221 2
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHh
Q 002307 634 LPG------WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 634 t~G------fSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~r 672 (938)
..| ...++|.+++++|...|..++...++.+|+..|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 222 346899999999999999999999999999988754
No 205
>PRK08116 hypothetical protein; Validated
Probab=98.71 E-value=8.9e-08 Score=104.73 Aligned_cols=69 Identities=26% Similarity=0.464 Sum_probs=50.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhh----hhHHHHHHHHHHHhCCCeEEEEcCcch
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV----GSARIRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~----~~~~vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
+.|++|+|++|||||+||.++|+++ +.++++++.+++...+... .......++.... ...+|+|||++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 4589999999999999999999975 7899999988887754322 1112223333322 345999999965
No 206
>PRK12377 putative replication protein; Provisional
Probab=98.68 E-value=1.4e-07 Score=102.08 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=62.9
Q ss_pred CCcccCccc----CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 420 TGVKFSDVA----GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 420 ~~v~F~dVv----G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
...+|++.. |...++..+..++..+. ....+++|+||||||||+||.|+|+++ +..+++++..
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 445677764 33334444444443321 123589999999999999999999987 6788888888
Q ss_pred hhHHHHhhhhh--HHHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 493 EFVEVLVGVGS--ARIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 493 el~~~~vG~~~--~~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
++...+..... .....++... ....+|+|||++..
T Consensus 139 ~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 139 DVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 88775433211 1122333332 45669999999764
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.67 E-value=6.2e-07 Score=106.57 Aligned_cols=220 Identities=17% Similarity=0.252 Sum_probs=134.6
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeCchhHH
Q 002307 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGSEFVE 496 (938)
Q Consensus 427 VvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~sel~~ 496 (938)
+.+.+....++..+++..-.+. .....+.+.|-||||||.+++.+-.++ ..+++.+++-.+.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 4555666666666655422221 112368899999999999999998855 34677777754432
Q ss_pred H---H-------hhh------hhHHHHHHHHHH-HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHH
Q 002307 497 V---L-------VGV------GSARIRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 559 (938)
Q Consensus 497 ~---~-------vG~------~~~~vr~lF~~A-r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqL 559 (938)
. | .|. +...+..-|... ....+|||+|||+|.|..+. +..+..+
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-------------------QdVlYn~ 531 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-------------------QDVLYNI 531 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-------------------HHHHHHH
Confidence 1 2 121 112223333311 23467899999999998653 2345555
Q ss_pred HHHhcCCcCCCeEEEEEecCCCCcCCccccC---CCccc-eEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCC
Q 002307 560 LIELDGFDTGKGVIFLAATNRRDLLDPALLR---PGRFD-RKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP 635 (938)
Q Consensus 560 L~eLDg~~~~~~ViVIAATN~pd~LDpALlR---pGRFd-r~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~ 635 (938)
+.+-. ..+..++||+..|..+.. ..++- ..|++ +.|.|.+++..+..+|+...+.....-....+.-+|+.-.
T Consensus 532 fdWpt--~~~sKLvvi~IaNTmdlP-Er~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVA 608 (767)
T KOG1514|consen 532 FDWPT--LKNSKLVVIAIANTMDLP-ERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVA 608 (767)
T ss_pred hcCCc--CCCCceEEEEecccccCH-HHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHH
Confidence 44432 345678888888876532 22221 12554 4788999999999999999998763222211222333322
Q ss_pred CC--CHHHHHHHHHHHHHHHHHhCC-------cccchhhHHHHHHhhcc
Q 002307 636 GW--TGARLAQLVQEAALVAVRKGH-------ESILSSDMDDAVDRLTV 675 (938)
Q Consensus 636 Gf--SgaDL~~Lv~eA~l~A~r~~~-------~~It~edl~~Ai~rv~~ 675 (938)
.. +.+....+|++|...|..+.. ..|+..|+.+|+..+..
T Consensus 609 avSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 609 AVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred hccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhh
Confidence 22 446677889999988876654 44677777777776654
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.66 E-value=2.3e-07 Score=104.73 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=57.8
Q ss_pred cC-cccCcHHHHHHHHHHHHHhcCchhhhccCC-CCCceEEEEcCCCchHHHHHHHHHHhcCC-------CEEEEeC---
Q 002307 424 FS-DVAGIDEAVEELQELVRYLKNPELFDKMGI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFYQMAG--- 491 (938)
Q Consensus 424 F~-dVvG~deak~eL~eiV~~Lk~pe~~~~lG~-~~p~GVLL~GPPGTGKT~LArALA~elg~-------pfi~vs~--- 491 (938)
|+ ++.|++++++++.+.+.... .|. ...+.++|+||||||||+||++||+.++. |++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 55 89999999777765544322 122 23467899999999999999999999976 8988887
Q ss_pred -chhHHHHhhhhhHHHHHHHH
Q 002307 492 -SEFVEVLVGVGSARIRDLFK 511 (938)
Q Consensus 492 -sel~~~~vG~~~~~vr~lF~ 511 (938)
+.+.+..++.....+|+.|.
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLE 142 (361)
T ss_pred CCCCccCCcccCCHHHHHHHH
Confidence 66555555554555554443
No 209
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.66 E-value=3.2e-07 Score=104.41 Aligned_cols=160 Identities=23% Similarity=0.417 Sum_probs=99.4
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCCEEE-----
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQ----- 488 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------g~pfi~----- 488 (938)
...|.-++|++..|..|--- .-+|. -.|+||-|+.|||||+++||||.-+ |+||-.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 56788899999988876321 22332 2489999999999999999999955 333310
Q ss_pred -EeCchhHHH---------------H----hhhhhHHH------HHHHH----------HHHhCCCeEEEEcCcchhhhh
Q 002307 489 -MAGSEFVEV---------------L----VGVGSARI------RDLFK----------RAKVNKPSVIFIDEIDALATR 532 (938)
Q Consensus 489 -vs~sel~~~---------------~----vG~~~~~v------r~lF~----------~Ar~~~P~ILfIDEIDaL~~~ 532 (938)
-.|.+...+ + .|.++.++ ....+ .|+. +-.||++||+..|..
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~d- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccccH-
Confidence 011111111 0 11222211 11111 1122 224999999987642
Q ss_pred hcCccCCcchhhhhhhhHHHHHHHHHHHHHh---------cCC--cCCCeEEEEEecCCCC-cCCccccCCCccceEEec
Q 002307 533 RQGIFKDTTDHLYNAATQERETTLNQLLIEL---------DGF--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRI 600 (938)
Q Consensus 533 r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL---------Dg~--~~~~~ViVIAATN~pd-~LDpALlRpGRFdr~I~V 600 (938)
+.++.||..+ +|+ ..+.++++|+|+|..+ .|-|.|+. ||...|.+
T Consensus 159 ---------------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~ 215 (423)
T COG1239 159 ---------------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDT 215 (423)
T ss_pred ---------------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeec
Confidence 2344444433 232 3345699999999754 78888888 99999998
Q ss_pred cCC-ChhhHHHHHHHHhc
Q 002307 601 RAP-NAKGRTEILKIHAS 617 (938)
Q Consensus 601 ~lP-d~eeR~eILr~~l~ 617 (938)
..| +.++|.+|.+..+.
T Consensus 216 ~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 216 HYPLDLEERVEIIRRRLA 233 (423)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 765 77889998877655
No 210
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.65 E-value=2e-07 Score=108.48 Aligned_cols=211 Identities=23% Similarity=0.328 Sum_probs=122.0
Q ss_pred cCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHh-
Q 002307 424 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV- 499 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~v- 499 (938)
+.+++|.+....++.+.+..+.. ...++++.|++||||+++|+++.... +.||+.++|..+.....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSR----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 34688988887777766655432 23479999999999999999998764 67999999987643321
Q ss_pred ----hhhhH----HHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC-----
Q 002307 500 ----GVGSA----RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF----- 566 (938)
Q Consensus 500 ----G~~~~----~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~----- 566 (938)
|.... ..............++|||||||.+... .+..+.+++..-...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------------~q~~ll~~l~~~~~~~~~~~ 263 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------------AQTRLLRVLADGEFYRVGGR 263 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-------------------HHHHHHHHHhcCcEEECCCC
Confidence 21000 0000000111234578999999997643 233344444432100
Q ss_pred -cCCCeEEEEEecCCCC-------cCCccccCCCccceEEeccCCChhhHHH----HHHHHhccccc----C-CccC---
Q 002307 567 -DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKVKM----S-DSVD--- 626 (938)
Q Consensus 567 -~~~~~ViVIAATN~pd-------~LDpALlRpGRFdr~I~V~lPd~eeR~e----ILr~~l~~~~l----~-~dvd--- 626 (938)
....++.+|++|+..- .+.+.|.. |+. .+.+.+|+..+|.+ ++++++..... . ..++
T Consensus 264 ~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 340 (463)
T TIGR01818 264 TPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEA 340 (463)
T ss_pred ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 1123577888887531 22223332 332 34566666665543 45555443211 1 1233
Q ss_pred HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 627 LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 627 L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+..|... ++| +.++|++++++|+..+ ....|+.+|+...+
T Consensus 341 ~~~L~~~~wpg-NvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 341 LERLKQLRWPG-NVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 3333333 344 6799999999998776 44678888887655
No 211
>PRK15115 response regulator GlrR; Provisional
Probab=98.65 E-value=2.8e-07 Score=106.82 Aligned_cols=206 Identities=21% Similarity=0.353 Sum_probs=120.4
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhh-
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV- 501 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~- 501 (938)
.++|.......+.+.+..+.. ....++|+|++|||||++|+++.... +.||+.++|..+.......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 467776665555444443321 23469999999999999999998865 5799999998764432211
Q ss_pred ----hh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc--CC--
Q 002307 502 ----GS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GF-- 566 (938)
Q Consensus 502 ----~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD--g~-- 566 (938)
.. ......+.. ....+|||||||.+.... +..+..++..-. ..
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~~~~-------------------q~~L~~~l~~~~~~~~g~ 262 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQA---AEGGTLFLDEIGDMPAPL-------------------QVKLLRVLQERKVRPLGS 262 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEE---CCCCEEEEEccccCCHHH-------------------HHHHHHHHhhCCEEeCCC
Confidence 00 000112222 234699999999986442 223333333211 00
Q ss_pred --cCCCeEEEEEecCCCCcCCccccCCCccc-------eEEeccCCChhhHHH----HHHHHhccccc----C-CccC--
Q 002307 567 --DTGKGVIFLAATNRRDLLDPALLRPGRFD-------RKIRIRAPNAKGRTE----ILKIHASKVKM----S-DSVD-- 626 (938)
Q Consensus 567 --~~~~~ViVIAATN~pd~LDpALlRpGRFd-------r~I~V~lPd~eeR~e----ILr~~l~~~~l----~-~dvd-- 626 (938)
....++.+|+||+.. ++..+.+ |+|. ..+.+..|+..+|.+ ++++++..... . ..++
T Consensus 263 ~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~ 339 (444)
T PRK15115 263 NRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD 339 (444)
T ss_pred CceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH
Confidence 012367889888852 3333332 4552 145677788888854 34555543211 1 1122
Q ss_pred -HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 627 -LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 627 -L~~LA~~t-~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+..|.... +| +.++|++++++|+..+ ....|+.+++...+
T Consensus 340 a~~~L~~~~Wpg-NvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 340 AMKRLMTASWPG-NVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred HHHHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 44455444 55 7899999999988664 45578887776544
No 212
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.1e-07 Score=102.59 Aligned_cols=69 Identities=30% Similarity=0.540 Sum_probs=49.7
Q ss_pred cccCcHHHHHHHHHHHHH-hcCchhhhccC-CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 426 DVAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~-Lk~pe~~~~lG-~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
.|+|++++|+.+.-.++. ++...+-..+. --.|++||..||+|+|||-+||.+|.-++.||+.+-+..|
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 388999999987655442 22211111111 2358999999999999999999999999999988765443
No 213
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.61 E-value=2.4e-07 Score=102.80 Aligned_cols=215 Identities=19% Similarity=0.282 Sum_probs=131.3
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchh
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 494 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel 494 (938)
......|+.+++.+..++.+.+-...+.- ....+||.|.+||||-++||+..... ..||+.++|..+
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~Am----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKLAM----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHhhc----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 33556789999988876666544333221 12358999999999999999997654 789999999876
Q ss_pred HHH-----Hhhhh--hHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC-
Q 002307 495 VEV-----LVGVG--SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF- 566 (938)
Q Consensus 495 ~~~-----~vG~~--~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~- 566 (938)
.+. ..|.. .+.-..+|+.|... .+|+|||..+.+. .+..+..||+.-.-.
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~-------------------lQaKLLRFL~DGtFRR 324 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPR-------------------LQAKLLRFLNDGTFRR 324 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHH-------------------HHHHHHHHhcCCceee
Confidence 653 22322 23345678887544 7999999886543 344455555431100
Q ss_pred -----cCCCeEEEEEecCCC--CcCCccccCCCccce--EEeccCCChhhHHH----HHH----HHhcccccC-CccC--
Q 002307 567 -----DTGKGVIFLAATNRR--DLLDPALLRPGRFDR--KIRIRAPNAKGRTE----ILK----IHASKVKMS-DSVD-- 626 (938)
Q Consensus 567 -----~~~~~ViVIAATN~p--d~LDpALlRpGRFdr--~I~V~lPd~eeR~e----ILr----~~l~~~~l~-~dvd-- 626 (938)
+-.-+|.||+||..+ +.....-.|..-|.+ ++.+..|...+|.. +.+ .+..+.++. +..+
T Consensus 325 VGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~ 404 (511)
T COG3283 325 VGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAAD 404 (511)
T ss_pred cCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHH
Confidence 112358999999864 233333333322332 67778888877754 223 333334333 2222
Q ss_pred -HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHH
Q 002307 627 -LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (938)
Q Consensus 627 -L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~ 668 (938)
+..+.+. ++| +.++|.|.+-+|+... ....++.+|+.-
T Consensus 405 ~~~~L~~y~WpG-NVRqL~N~iyRA~s~~---Eg~~l~i~~i~L 444 (511)
T COG3283 405 LLTVLTRYAWPG-NVRQLKNAIYRALTLL---EGYELRIEDILL 444 (511)
T ss_pred HHHHHHHcCCCc-cHHHHHHHHHHHHHHh---ccCccchhhccc
Confidence 2223322 445 7899999999998776 345566665543
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.60 E-value=3.6e-07 Score=98.77 Aligned_cols=101 Identities=18% Similarity=0.319 Sum_probs=65.4
Q ss_pred CCcccCccc-CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhH
Q 002307 420 TGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 495 (938)
Q Consensus 420 ~~v~F~dVv-G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~ 495 (938)
...+|++.. +.+..+..+..+..+..+.. ....+++|+|+||||||+|+.++|.++ +..++.++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 456788765 33333333444333332211 113489999999999999999999987 7889999988888
Q ss_pred HHHhhhh---hHHHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 496 EVLVGVG---SARIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 496 ~~~vG~~---~~~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
..+.... ......++.... ..++|+|||++..
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7554321 112233444432 5679999999874
No 215
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.5e-07 Score=106.41 Aligned_cols=75 Identities=32% Similarity=0.565 Sum_probs=61.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-HHhhhhh-HHHHHHHHHHH----hCCCeEEEEcCcchhhhh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVGVGS-ARIRDLFKRAK----VNKPSVIFIDEIDALATR 532 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-~~vG~~~-~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~ 532 (938)
.+|||.||+|+|||+||+.||+-+++||..++|..+.. .|+|+.. ..+..++..|. +.+..||||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 37999999999999999999999999999999998865 4788754 34566666652 335569999999999854
Q ss_pred h
Q 002307 533 R 533 (938)
Q Consensus 533 r 533 (938)
.
T Consensus 307 ~ 307 (564)
T KOG0745|consen 307 A 307 (564)
T ss_pred C
Confidence 3
No 216
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.56 E-value=4.1e-08 Score=95.88 Aligned_cols=112 Identities=29% Similarity=0.427 Sum_probs=57.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc-hh-HHHHhhhhhHHHH-HHHHHHHhCC---CeEEEEcCcchhhhhh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-EF-VEVLVGVGSARIR-DLFKRAKVNK---PSVIFIDEIDALATRR 533 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s-el-~~~~vG~~~~~vr-~lF~~Ar~~~---P~ILfIDEIDaL~~~r 533 (938)
+|||+|+||+|||++|+++|+..+..|..+.+. ++ .+...|..--... ..|.. ... ..|+++|||....++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNrappkt 78 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRAPPKT 78 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS-HHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccCCHHH
Confidence 489999999999999999999999999988774 33 2333333110000 00000 001 1399999999865542
Q ss_pred cCccCCcchhhhhhhhHHHHHHHHHHHHHh----cC--CcCCCeEEEEEecCCCC-----cCCccccCCCcc
Q 002307 534 QGIFKDTTDHLYNAATQERETTLNQLLIEL----DG--FDTGKGVIFLAATNRRD-----LLDPALLRPGRF 594 (938)
Q Consensus 534 ~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL----Dg--~~~~~~ViVIAATN~pd-----~LDpALlRpGRF 594 (938)
+..+.+.+.+- +| +.-++.++||||-|..+ .|+++++. ||
T Consensus 79 -------------------QsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 79 -------------------QSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -------------------HHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------------------HHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 23333333331 11 23356789999999866 67788877 76
No 217
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.54 E-value=7.2e-07 Score=90.48 Aligned_cols=133 Identities=29% Similarity=0.447 Sum_probs=85.6
Q ss_pred CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC-----------------------
Q 002307 429 GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------------- 485 (938)
Q Consensus 429 G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p----------------------- 485 (938)
|++++++.|.+.+.. .+.|+.+||+||+|+||+++|+++|+.+-+.
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 678888888776642 3567789999999999999999999976221
Q ss_pred EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHH
Q 002307 486 FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 561 (938)
Q Consensus 486 fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~ 561 (938)
++.++..... .....+.++.+...+.. ....|++|||+|.+.. ...|.||.
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~----------------------~a~NaLLK 124 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE----------------------EAQNALLK 124 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H----------------------HHHHHHHH
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH----------------------HHHHHHHH
Confidence 2222221100 01133556666665432 2456999999999742 34677888
Q ss_pred HhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccC
Q 002307 562 ELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 602 (938)
Q Consensus 562 eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~l 602 (938)
.|+ +.+.++++|.+|+.++.+-+.+++ |. ..+.+++
T Consensus 125 ~LE--epp~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 125 TLE--EPPENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp HHH--STTTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred Hhc--CCCCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 887 456788888889999999999998 74 4566654
No 218
>PRK08181 transposase; Validated
Probab=98.53 E-value=5.8e-07 Score=98.48 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=52.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhh-hHHHHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~~-~~~vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
..+++|+||||||||+||.+++.++ |..+++++..++...+.... .......+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 4589999999999999999999755 78888999888887653321 12233344433 356699999998754
No 219
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=4.4e-07 Score=102.49 Aligned_cols=134 Identities=24% Similarity=0.344 Sum_probs=94.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCE-------------------------EEEeCchhH--------------
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------------------------YQMAGSEFV-------------- 495 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pf-------------------------i~vs~sel~-------------- 495 (938)
.+.|+++||+||+|+||+++|+++|+.+.+.- ..+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 36788999999999999999999999774421 111100000
Q ss_pred ----HH----H-hhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH
Q 002307 496 ----EV----L-VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (938)
Q Consensus 496 ----~~----~-vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e 562 (938)
.. . ...+...+|.+...+.. ....|++||++|.+. ...-|.||..
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~----------------------~~AaNaLLKt 155 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN----------------------VAAANALLKT 155 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC----------------------HHHHHHHHHH
Confidence 00 0 01123456666655432 223599999999874 2346788888
Q ss_pred hcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHH
Q 002307 563 LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIH 615 (938)
Q Consensus 563 LDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~ 615 (938)
++ +++.++++|.+|++++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 156 LE--EPp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 156 LE--EPPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred hc--CCCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 88 577888888899999999999998 86 68999999999888888654
No 220
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=1.3e-06 Score=98.17 Aligned_cols=129 Identities=19% Similarity=0.326 Sum_probs=93.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCC------------------------EEEEeCchhHHHHhhhhhHHHHHHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 511 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~p------------------------fi~vs~sel~~~~vG~~~~~vr~lF~ 511 (938)
+.++++||+||+|+||+++|+++|+.+-+. |+.+...+ + ...+...+|++.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~--~~I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--N--KDIGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--C--CCCCHHHHHHHHH
Confidence 567899999999999999999999966331 11111100 0 0124556777666
Q ss_pred HHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCcc
Q 002307 512 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (938)
Q Consensus 512 ~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpA 587 (938)
.+.. ..-.|++||++|.+.. ..-|.||..|+ +++.++++|.+|+.++.+.|.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~----------------------~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTE----------------------AAANALLKTLE--EPRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred HHhhccccCCceEEEEechhhhCH----------------------HHHHHHHHHhc--CCCCCeEEEEEECChHhCchH
Confidence 5532 2335999999999742 34678888887 567788888899999999999
Q ss_pred ccCCCccceEEeccCCChhhHHHHHHHH
Q 002307 588 LLRPGRFDRKIRIRAPNAKGRTEILKIH 615 (938)
Q Consensus 588 LlRpGRFdr~I~V~lPd~eeR~eILr~~ 615 (938)
+++ |. ..+.+.+|+.++-.+.|...
T Consensus 154 I~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 154 IYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 998 74 58889999998888777765
No 221
>PRK06526 transposase; Provisional
Probab=98.49 E-value=3.5e-07 Score=99.37 Aligned_cols=72 Identities=22% Similarity=0.427 Sum_probs=50.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhh-hHHHHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~~-~~~vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
.+.+++|+||||||||+||.+++.++ |..+..++..++........ .......+.. ...+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 45689999999999999999998875 67777777777776543221 1122233332 2346799999998764
No 222
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.49 E-value=5.8e-07 Score=110.00 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=91.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccccccchhhhhhhhhhHhhhHHHHHHhhcC
Q 002307 269 SSISSRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSGE 348 (938)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (938)
....+.++-.++.++++|.++.++..|.++.+.++...+..-....++--+..-.. -+-.+..+++++.+.++.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~------~~q~~~~~~~rL~dil~~ 452 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWT------DFQQAKVALERLGDILDT 452 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHhcC
Confidence 34567788999999999999999999999999988877766655444444433333 445556666777777665
Q ss_pred CCccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccccccccccccCCCCcccCccc
Q 002307 349 GGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVA 428 (938)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVv 428 (938)
+...+.... ..........++|++|.
T Consensus 453 ~~E~~~~~~------------------------------------------------------~~~~~~~~g~I~~~nvs 478 (709)
T COG2274 453 PPEQEGDKT------------------------------------------------------LIHLPKLQGEIEFENVS 478 (709)
T ss_pred Ccccccccc------------------------------------------------------cccccccCceEEEEEEE
Confidence 544433111 00111223456666664
Q ss_pred -CcHHH-HHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 429 -GIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 429 -G~dea-k~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+..- ...|.++ .+.++++.-|.|.|++|||||||+|.+.+
T Consensus 479 f~y~~~~~~vL~~i-----------sL~I~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 479 FRYGPDDPPVLEDL-----------SLEIPPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred EEeCCCCcchhhce-----------eEEeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 22211 1122221 34456666699999999999999999998
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.47 E-value=6.7e-07 Score=100.63 Aligned_cols=69 Identities=22% Similarity=0.431 Sum_probs=50.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhh---hHHHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG---SARIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~~---~~~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
.+++|+||+|||||+||.|+|+++ +..+++++..++...+.... .......+... ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 689999999999999999999986 78899999988877653321 11111123332 34569999999774
No 224
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=3.7e-06 Score=94.27 Aligned_cols=150 Identities=20% Similarity=0.293 Sum_probs=97.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCE----EEEeCchhHHH-------H-------------hhhhhHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF----YQMAGSEFVEV-------L-------------VGVGSARIRDLF 510 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pf----i~vs~sel~~~-------~-------------vG~~~~~vr~lF 510 (938)
.+.|+.+||+||+|+||+++|.++|+.+-+.- -.+.+..++.. + ...+.+.+|++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 35678899999999999999999998663210 00011111100 0 012244567666
Q ss_pred HHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCc
Q 002307 511 KRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDP 586 (938)
Q Consensus 511 ~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDp 586 (938)
+.+... .-.|++||++|.+.. ...|.||..|+ +++.++++|..|+.++.|.|
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~----------------------~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR----------------------AACNALLKTLE--EPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH----------------------HHHHHHHHHhh--CCCCCCeEEEEECChhhCch
Confidence 655332 235999999999742 34677888777 45567777778888999999
Q ss_pred cccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCC
Q 002307 587 ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 636 (938)
Q Consensus 587 ALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~G 636 (938)
.+++ |. ..+.++.|+.++-.+.|... ... ..+...++..+.|
T Consensus 159 TIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G 200 (319)
T PRK08769 159 TIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARG 200 (319)
T ss_pred HHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCC
Confidence 9998 75 58889999998777777542 222 1223455666666
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.47 E-value=8.8e-07 Score=98.78 Aligned_cols=102 Identities=23% Similarity=0.334 Sum_probs=64.9
Q ss_pred CcccCcccCcH-HHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 002307 421 GVKFSDVAGID-EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (938)
Q Consensus 421 ~v~F~dVvG~d-eak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~ 496 (938)
..+|+++...+ .....+.....++.+-. . ....+|++|+||+|||||+||.|+|+++ |.++..+..++|+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~---~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYP---P--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhh---c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 46777776433 22222333333433211 1 1245799999999999999999999987 78888888888877
Q ss_pred HHhhhh-hHHHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 497 VLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 497 ~~vG~~-~~~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
.+.... ...+...+... ....+|+||||..-
T Consensus 198 ~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 654321 11233444443 34569999999763
No 226
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.46 E-value=7.3e-07 Score=107.08 Aligned_cols=188 Identities=16% Similarity=0.127 Sum_probs=126.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCchhHHHHhhhhh--H--------HHHHHHHHHHhCCCeEEEEcCc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGS--A--------RIRDLFKRAKVNKPSVIFIDEI 526 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sel~~~~vG~~~--~--------~vr~lF~~Ar~~~P~ILfIDEI 526 (938)
.||+|.|++|||||+++++++.-+. .||..+..+--.+..+|... . ....++..|. ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999874 58988766555555566431 0 0112333332 249999999
Q ss_pred chhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC-----------cCCCeEEEEEecCCC---CcCCccccCCC
Q 002307 527 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRR---DLLDPALLRPG 592 (938)
Q Consensus 527 DaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~-----------~~~~~ViVIAATN~p---d~LDpALlRpG 592 (938)
..+.+ .+++.|++.|+.- .-+.++++|++-|.. ..|+++++.
T Consensus 103 n~~~~----------------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD-- 158 (584)
T PRK13406 103 ERLEP----------------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD-- 158 (584)
T ss_pred ccCCH----------------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--
Confidence 88643 3456666666421 123567888874432 358899998
Q ss_pred ccceEEeccCCChhhH-------HHHHHH--HhcccccCCccCHHHHHhh--CCCC-CHHHHHHHHHHHHHHHHHhCCcc
Q 002307 593 RFDRKIRIRAPNAKGR-------TEILKI--HASKVKMSDSVDLSSYAKN--LPGW-TGARLAQLVQEAALVAVRKGHES 660 (938)
Q Consensus 593 RFdr~I~V~lPd~eeR-------~eILr~--~l~~~~l~~dvdL~~LA~~--t~Gf-SgaDL~~Lv~eA~l~A~r~~~~~ 660 (938)
||+.++.++.|+..+. .+|.+. .+.+..+.. ..+..++.. ..|. |.+-...+++-|..+|.-++++.
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~-~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~ 237 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPP-EAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTA 237 (584)
T ss_pred heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 9999999998775432 233332 223322221 123333322 2365 77888889999999999999999
Q ss_pred cchhhHHHHHHhhc
Q 002307 661 ILSSDMDDAVDRLT 674 (938)
Q Consensus 661 It~edl~~Ai~rv~ 674 (938)
|+.+|+.+|+.-++
T Consensus 238 V~~~dv~~Aa~lvL 251 (584)
T PRK13406 238 VEEEDLALAARLVL 251 (584)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988765
No 227
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.45 E-value=1.5e-06 Score=90.20 Aligned_cols=184 Identities=23% Similarity=0.311 Sum_probs=92.6
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC---CEEEEeC-chhH----HHH-
Q 002307 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---PFYQMAG-SEFV----EVL- 498 (938)
Q Consensus 428 vG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~---pfi~vs~-sel~----~~~- 498 (938)
+|.++..+.|.+.+.. .+...++|+||.|+|||+|++.+...... ..+++.. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 4666666666555432 12457999999999999999999998832 2222221 1100 000
Q ss_pred ------------h-----------------hhhhHHHHHHHHHHHhC-CCeEEEEcCcchhh-hhhcCccCCcchhhhhh
Q 002307 499 ------------V-----------------GVGSARIRDLFKRAKVN-KPSVIFIDEIDALA-TRRQGIFKDTTDHLYNA 547 (938)
Q Consensus 499 ------------v-----------------G~~~~~vr~lF~~Ar~~-~P~ILfIDEIDaL~-~~r~~~~~~~~~~~~~~ 547 (938)
. ......+..++...... ...||+|||++.+. ...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------------- 135 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------------- 135 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--------------
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--------------
Confidence 0 01123455556655543 34899999999987 211
Q ss_pred hhHHHHHHHHHHHHHhcCCcCCCe-EEEEEecCC--C-C--cCCccccCCCccceEEeccCCChhhHHHHHHHHhccc-c
Q 002307 548 ATQERETTLNQLLIELDGFDTGKG-VIFLAATNR--R-D--LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV-K 620 (938)
Q Consensus 548 ~~~e~~~~LnqLL~eLDg~~~~~~-ViVIAATN~--p-d--~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~-~ 620 (938)
........+..++.. .....+ .+|+++++. . + .-...+. +|+.. +.+++-+.++..++++..+... .
T Consensus 136 ~~~~~~~~l~~~~~~---~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~ 209 (234)
T PF01637_consen 136 EDKDFLKSLRSLLDS---LLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIK 209 (234)
T ss_dssp TTHHHHHHHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC--
T ss_pred chHHHHHHHHHHHhh---ccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhc
Confidence 111122223333332 222333 444444442 1 1 1122333 37776 9999999999999999987665 1
Q ss_pred c-CCccCHHHHHhhCCCCCHHHHHH
Q 002307 621 M-SDSVDLSSYAKNLPGWTGARLAQ 644 (938)
Q Consensus 621 l-~~dvdL~~LA~~t~GfSgaDL~~ 644 (938)
+ .++.+++.+...+.| .|+-|..
T Consensus 210 ~~~~~~~~~~i~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 210 LPFSDEDIEEIYSLTGG-NPRYLQE 233 (234)
T ss_dssp ----HHHHHHHHHHHTT--HHHHHH
T ss_pred ccCCHHHHHHHHHHhCC-CHHHHhc
Confidence 1 144557778888877 5666653
No 228
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.2e-06 Score=95.33 Aligned_cols=72 Identities=28% Similarity=0.474 Sum_probs=52.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhhhH-HHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSA-RIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~~~~-~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
.+.+++|+||||||||+||-|+++++ |.+++.+..++++......... ....-+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 45689999999999999999999977 7899999999998875443221 111112221 234559999999874
No 229
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.43 E-value=3.3e-07 Score=90.02 Aligned_cols=81 Identities=28% Similarity=0.535 Sum_probs=57.0
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC---CCEEEEeCchhHHHHhhhhhH
Q 002307 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEVLVGVGSA 504 (938)
Q Consensus 428 vG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sel~~~~vG~~~~ 504 (938)
+|.....+++++-+..+... ...|||+|++||||+++|+++....+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46777888888877765432 34799999999999999999998764 477777776533
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcchhhhh
Q 002307 505 RIRDLFKRAKVNKPSVIFIDEIDALATR 532 (938)
Q Consensus 505 ~vr~lF~~Ar~~~P~ILfIDEIDaL~~~ 532 (938)
.++++.+ ...+|||+|||.+...
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE 84 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH
Confidence 3345444 5669999999997543
No 230
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.41 E-value=1.8e-06 Score=99.69 Aligned_cols=206 Identities=22% Similarity=0.316 Sum_probs=119.0
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhh-
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV- 501 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~- 501 (938)
.++|.+.....+.+-+..+. .....++++|.+||||+++|+++.... +.||+.++|..+.......
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46677776666655444332 234579999999999999999997654 5799999998764432211
Q ss_pred ----hhHH-------HHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc--CCc-
Q 002307 502 ----GSAR-------IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFD- 567 (938)
Q Consensus 502 ----~~~~-------vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD--g~~- 567 (938)
.... ....+. ....++|||||||.+.... +..+..++..-. ...
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~~~~-------------------q~~l~~~l~~~~~~~~~~ 267 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDISPMM-------------------QVRLLRAIQEREVQRVGS 267 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCCHHH-------------------HHHHHHHHccCcEEeCCC
Confidence 0000 001122 2346799999999986432 222223332211 000
Q ss_pred ---CCCeEEEEEecCCCCcCCccccCCCccce-------EEeccCCChhhHHH----HHHHHhcccc----cC-CccC--
Q 002307 568 ---TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKVK----MS-DSVD-- 626 (938)
Q Consensus 568 ---~~~~ViVIAATN~pd~LDpALlRpGRFdr-------~I~V~lPd~eeR~e----ILr~~l~~~~----l~-~dvd-- 626 (938)
...++.+|++|+.+- ..+..+|+|.. .+.+..|+..+|.+ ++++++.... .. ..++
T Consensus 268 ~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (441)
T PRK10365 268 NQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ 344 (441)
T ss_pred CceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH
Confidence 112467888887532 12223345543 56677788887755 4455544321 11 1122
Q ss_pred -HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 627 -LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 627 -L~~LA~~t-~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+..|.... +| +.++|++++++|+..+ ....|+.+++...+
T Consensus 345 a~~~L~~~~wpg-N~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 345 AMDLLIHYDWPG-NIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred HHHHHHhCCCCC-HHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 34444443 45 7899999999988654 45678888876544
No 231
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.40 E-value=2.1e-06 Score=94.62 Aligned_cols=197 Identities=18% Similarity=0.186 Sum_probs=118.1
Q ss_pred ccccccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeC
Q 002307 412 AEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (938)
Q Consensus 412 ~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 491 (938)
....+++.+.-.+.|++++++....+.++.+.-+ .| +.|+|||||||||....+.|+.+..|.-.-
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~-----------lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~-- 93 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPG-----------LP-HLLFYGPPGTGKTSTILANARDFYSPHPTT-- 93 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHHhccCCC-----------CC-cccccCCCCCCCCCchhhhhhhhcCCCCch--
Confidence 3445667777889999999999888877643222 12 789999999999999999999987751110
Q ss_pred chhHHHH----hhhhhH-HHHHHHHHHHh-------CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHH
Q 002307 492 SEFVEVL----VGVGSA-RIRDLFKRAKV-------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 559 (938)
Q Consensus 492 sel~~~~----vG~~~~-~vr~lF~~Ar~-------~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqL 559 (938)
+-..+.. .|...- ..-..|+.++. ..+..++|||.|++..+.+ |+|
T Consensus 94 ~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ----------------------nAL 151 (360)
T KOG0990|consen 94 SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ----------------------NAL 151 (360)
T ss_pred hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH----------------------HHH
Confidence 1111110 111111 12234554442 2667999999999865422 222
Q ss_pred HHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCCCC
Q 002307 560 LIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWT 638 (938)
Q Consensus 560 L~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~GfS 638 (938)
-..+..+. .++.++.-+|.+..+.|++++ |+. .+.+.+-+...-...+.+++......-..+ ...+++..
T Consensus 152 RRviek~t--~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s---- 222 (360)
T KOG0990|consen 152 RRVIEKYT--ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLS---- 222 (360)
T ss_pred HHHHHHhc--cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHh----
Confidence 23344333 344555568999999999997 765 344556666666777777776544332222 23344433
Q ss_pred HHHHHHHHHHHHHHH
Q 002307 639 GARLAQLVQEAALVA 653 (938)
Q Consensus 639 gaDL~~Lv~eA~l~A 653 (938)
-.|++..++..-..+
T Consensus 223 ~gDmr~a~n~Lqs~~ 237 (360)
T KOG0990|consen 223 VGDMRVALNYLQSIL 237 (360)
T ss_pred HHHHHHHHHHHHHHH
Confidence 336666555544333
No 232
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.1e-06 Score=105.95 Aligned_cols=130 Identities=34% Similarity=0.396 Sum_probs=89.3
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH--h
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL--V 499 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~--v 499 (938)
+.|+|++++...+.+.|..-+..-. +. ++...+||.||.|+|||-||+++|... .-.++.+++++|.+.. .
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~-~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK-DP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC-CC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 3589999999999988887443211 01 356679999999999999999999977 4578999999876621 1
Q ss_pred hh-----hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc-------
Q 002307 500 GV-----GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD------- 567 (938)
Q Consensus 500 G~-----~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~------- 567 (938)
|. +......+.+..++...+||+|||||.-. . ..++.|++.+|...
T Consensus 638 gsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh-------------------~---~v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 638 GSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH-------------------P---DVLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred CCCcccccchhHHHHHHHHhcCCceEEEEechhhcC-------------------H---HHHHHHHHHHhcCccccCCCc
Confidence 11 12223355555566666999999999832 2 23455555554221
Q ss_pred --CCCeEEEEEecCC
Q 002307 568 --TGKGVIFLAATNR 580 (938)
Q Consensus 568 --~~~~ViVIAATN~ 580 (938)
.-+++|||+|+|.
T Consensus 696 ~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNV 710 (898)
T ss_pred EeeccceEEEEeccc
Confidence 1256899999996
No 233
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.9e-06 Score=97.16 Aligned_cols=152 Identities=17% Similarity=0.233 Sum_probs=101.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCC------------------------EEEEeCchhHHHHhhhhhHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLF 510 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~p------------------------fi~vs~sel~~~~vG~~~~~vr~lF 510 (938)
.+.++.+||+||+|+||+++|.++|+.+-+. +..+.... .-...+.+.+|++.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---GKSSLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---ccccCCHHHHHHHH
Confidence 3678899999999999999999999976321 11111100 00012344667766
Q ss_pred HHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCc
Q 002307 511 KRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDP 586 (938)
Q Consensus 511 ~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDp 586 (938)
+.+.. ....|++||++|.+. .+.-|.||..|+ +++.+.++|..|+.++.|.|
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m~----------------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALLT----------------------DAAANALLKTLE--EPPENTWFFLACREPARLLA 153 (334)
T ss_pred HHHhhccccCCceEEEEcchHhhC----------------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChH
Confidence 65432 234599999999974 234678888887 56778888888999999999
Q ss_pred cccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHH
Q 002307 587 ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGAR 641 (938)
Q Consensus 587 ALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaD 641 (938)
.+++ |.. .+.+++|+.++..+.|.... +.. ..+...+++.+.| ++..
T Consensus 154 TIrS--RCq-~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G-~~~~ 200 (334)
T PRK07993 154 TLRS--RCR-LHYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAG-APGA 200 (334)
T ss_pred HHHh--ccc-cccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCC-CHHH
Confidence 9998 865 67999999888777765431 222 1224445566666 4433
No 234
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.39 E-value=6.7e-06 Score=89.69 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 002307 581 RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHE 659 (938)
Q Consensus 581 pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-L~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~ 659 (938)
|..+|-.++. |. ..|...+++.++.++||+..+......-+.+ ++.|......-|-+-.-+|+..|...|.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4567777776 54 3677778899999999999997654432222 444444444556778889999999999999999
Q ss_pred ccchhhHHHHHHhhc
Q 002307 660 SILSSDMDDAVDRLT 674 (938)
Q Consensus 660 ~It~edl~~Ai~rv~ 674 (938)
.+..+|+..+..-.+
T Consensus 416 ~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFL 430 (454)
T ss_pred eeehhHHHHHHHHHh
Confidence 999999999887654
No 235
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=7.6e-06 Score=93.98 Aligned_cols=205 Identities=20% Similarity=0.252 Sum_probs=132.8
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----CC-CEEEEeCchhHH---
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GV-PFYQMAGSEFVE--- 496 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----g~-pfi~vs~sel~~--- 496 (938)
..+.|.+..+..+++++.. .+-...++.+.+.|-||||||.+..-+-... .. ..++++|.++..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 5588999999999888765 2223456789999999999999988765443 22 347888865322
Q ss_pred -------HH----hhhhh-HHHHHHHHHH-HhC-CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH
Q 002307 497 -------VL----VGVGS-ARIRDLFKRA-KVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (938)
Q Consensus 497 -------~~----vG~~~-~~vr~lF~~A-r~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e 562 (938)
.+ .+.+. ......|..- ... .+-++++||+|.|+.+.+. ++..+. +
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-------------------vLy~lF-e 281 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-------------------VLYTLF-E 281 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-------------------eeeeeh-h
Confidence 11 11111 1223334332 222 3679999999999855332 222222 2
Q ss_pred hcCCcCCCeEEEEEecCCCCcCCccccC----CCccceEEeccCCChhhHHHHHHHHhcccccCCccC--HHHHHhhCCC
Q 002307 563 LDGFDTGKGVIFLAATNRRDLLDPALLR----PGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD--LSSYAKNLPG 636 (938)
Q Consensus 563 LDg~~~~~~ViVIAATN~pd~LDpALlR----pGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd--L~~LA~~t~G 636 (938)
++. -.+..+++|+-+|..|.-|..|-| -+--...+.|++++.++..+||+..+.........+ +.-.|+...|
T Consensus 282 wp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 282 WPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred ccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 222 245788999999987765554442 122345889999999999999999998876554444 5667788888
Q ss_pred CCH--HHHHHHHHHHHHHHHHhCC
Q 002307 637 WTG--ARLAQLVQEAALVAVRKGH 658 (938)
Q Consensus 637 fSg--aDL~~Lv~eA~l~A~r~~~ 658 (938)
.|| +.+-.+|+.|..+|..+.+
T Consensus 361 ~SGDlRkaLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 361 PSGDLRKALDVCRRAIEIAEIEKR 384 (529)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHh
Confidence 777 3444567888877766543
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=98.37 E-value=1.9e-06 Score=93.92 Aligned_cols=74 Identities=30% Similarity=0.471 Sum_probs=52.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhh-hhHHHHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV-GSARIRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~-~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
..+.+++|+||||||||+||.+++..+ |..+.++++.++...+... ....+...+... ...+++++|||++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 345689999999999999999997764 7788888888877554321 112244445443 2456799999998753
No 237
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.37 E-value=1e-06 Score=104.32 Aligned_cols=206 Identities=23% Similarity=0.326 Sum_probs=127.3
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc--CCCEEEEeCchhHHHH-----hh
Q 002307 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA--GVPFYQMAGSEFVEVL-----VG 500 (938)
Q Consensus 428 vG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el--g~pfi~vs~sel~~~~-----vG 500 (938)
.+.+...+.+...+..+...+ -.+||.|.|||||-.|+|++.... ..||+.++|.-+.+.. +|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~----------~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATD----------LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcC----------CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 466666666666665544332 269999999999999999997654 6799999997655432 22
Q ss_pred hh--------hHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH-----hcCCc
Q 002307 501 VG--------SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE-----LDGFD 567 (938)
Q Consensus 501 ~~--------~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e-----LDg~~ 567 (938)
-. .+..+..+++|.. ..+|+|||..+.-. .+..+.+.|++ +.+-.
T Consensus 386 y~~GafTga~~kG~~g~~~~A~g---GtlFldeIgd~p~~-------------------~Qs~LLrVl~e~~v~p~g~~~ 443 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADG---GTLFLDEIGDMPLA-------------------LQSRLLRVLQEGVVTPLGGTR 443 (606)
T ss_pred cCccccccchhccccccceecCC---CccHHHHhhhchHH-------------------HHHHHHHHHhhCceeccCCcc
Confidence 21 1222333444333 38999999886532 33344455554 23333
Q ss_pred CCCeEEEEEecCCCCcCCccccCCCccceE-------EeccCCChhhHHH---HHHHHhccccc-CCccC----HHHHHh
Q 002307 568 TGKGVIFLAATNRRDLLDPALLRPGRFDRK-------IRIRAPNAKGRTE---ILKIHASKVKM-SDSVD----LSSYAK 632 (938)
Q Consensus 568 ~~~~ViVIAATN~pd~LDpALlRpGRFdr~-------I~V~lPd~eeR~e---ILr~~l~~~~l-~~dvd----L~~LA~ 632 (938)
..-.|.||+||+++- ..|.+.|||.+. ..|.+|+..+|.+ .|.+++..... ...++ ..-++-
T Consensus 444 ~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~ 520 (606)
T COG3284 444 IKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAY 520 (606)
T ss_pred eeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhC
Confidence 334589999999742 355566777653 3455787777654 44444433221 11222 223455
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHh
Q 002307 633 NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 633 ~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~r 672 (938)
..+| +-++|.++++.++..+ ....|...|+...+..
T Consensus 521 ~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l~~ 556 (606)
T COG3284 521 RWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPELLE 556 (606)
T ss_pred CCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHHHHh
Confidence 5778 7899999999988776 5555666666655543
No 238
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.32 E-value=1.7e-06 Score=98.47 Aligned_cols=141 Identities=23% Similarity=0.317 Sum_probs=84.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCC-CEEEEeCchhHHHHhhh------hhHHHHHHHHHHHhCCCeEEEEcCcc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSVIFIDEID 527 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~-pfi~vs~sel~~~~vG~------~~~~vr~lF~~Ar~~~P~ILfIDEID 527 (938)
..+|+|++||||+|+|||+|+-.+...+.. .-..+.-.+|+...... ....+..+.+... ....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 457999999999999999999999887754 22222223443321111 1112222222222 233499999997
Q ss_pred hhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCC-CCcCCc-cccCCCccceEEeccCCCh
Q 002307 528 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDP-ALLRPGRFDRKIRIRAPNA 605 (938)
Q Consensus 528 aL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~-pd~LDp-ALlRpGRFdr~I~V~lPd~ 605 (938)
.- +-.....+..|+..+- ..++++|+|+|+ |+.|-+ .+.| .+|-
T Consensus 138 V~-------------------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r-~~Fl---------- 183 (362)
T PF03969_consen 138 VT-------------------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQR-ERFL---------- 183 (362)
T ss_pred cc-------------------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccH-HHHH----------
Confidence 62 1122345566666652 368999999997 443332 2222 2331
Q ss_pred hhHHHHHHHHhcccccCCccCHHHHH
Q 002307 606 KGRTEILKIHASKVKMSDSVDLSSYA 631 (938)
Q Consensus 606 eeR~eILr~~l~~~~l~~dvdL~~LA 631 (938)
--.++|+.++.-..+....|+....
T Consensus 184 -p~I~~l~~~~~vv~ld~~~DyR~~~ 208 (362)
T PF03969_consen 184 -PFIDLLKRRCDVVELDGGVDYRRRG 208 (362)
T ss_pred -HHHHHHHhceEEEEecCCCchhhhc
Confidence 1256788888888888888876643
No 239
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.32 E-value=6.3e-06 Score=97.95 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccccc
Q 002307 273 SRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARP 322 (938)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 322 (938)
+.++.-++.+.+++.+++++.+|.++.+.+++....+...+.++.++...
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~ 293 (529)
T TIGR02868 244 QLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAA 293 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777788888899999888888777777666666655543
No 240
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=5.1e-06 Score=80.58 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=48.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
+.++|+||.|||||++++.++.... ..++++++.+.......... +.+.+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 77888888765542211111 223333222235679999999886
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.31 E-value=1e-06 Score=90.91 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=49.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhh-hHHHHHHHHHHHhCCCeEEEEcCcch
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~~-~~~vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
.+.|++|+||||||||+||.+++.++ |.++.+++.++++..+.... .......+.... .+.+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 45699999999999999999999876 88999999999988754331 112334444433 345899999965
No 242
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.30 E-value=1.1e-05 Score=96.03 Aligned_cols=208 Identities=21% Similarity=0.315 Sum_probs=116.1
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc-h
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-E 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s-e 493 (938)
.++.-.+.+.+||+-..+-.++++..+.... .+....+-+||+||||||||++++.||++++..+..-..+ .
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~ 81 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVS 81 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 3445567788999988777777776665321 1223345688999999999999999999998877654221 1
Q ss_pred hH------HHHhhhh---------hHHHHHH-HHHHHh-----------CCCeEEEEcCcchhhhhhcCccCCcchhhhh
Q 002307 494 FV------EVLVGVG---------SARIRDL-FKRAKV-----------NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 546 (938)
Q Consensus 494 l~------~~~vG~~---------~~~vr~l-F~~Ar~-----------~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~ 546 (938)
+. ..+.+.. ......+ +..++. ..+.||+|||+-.+...
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-------------- 147 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-------------- 147 (519)
T ss_pred ccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------------
Confidence 00 0111110 0111111 111111 24679999999865432
Q ss_pred hhhHHHHHHHHHHHHHhcCCcCCC-eEEEEEe-cC------CC--------CcCCccccCCCccceEEeccCCChhhHHH
Q 002307 547 AATQERETTLNQLLIELDGFDTGK-GVIFLAA-TN------RR--------DLLDPALLRPGRFDRKIRIRAPNAKGRTE 610 (938)
Q Consensus 547 ~~~~e~~~~LnqLL~eLDg~~~~~-~ViVIAA-TN------~p--------d~LDpALlRpGRFdr~I~V~lPd~eeR~e 610 (938)
........+.+++.. ... .+++|.+ ++ .. ..+++.++...++ .+|.|.+-...-...
T Consensus 148 -~~~~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkK 220 (519)
T PF03215_consen 148 -DTSRFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKK 220 (519)
T ss_pred -hHHHHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHH
Confidence 112333444444432 222 6666666 11 11 1355566543333 478887766655555
Q ss_pred HHHHHhccc--------ccCCccC-HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 611 ILKIHASKV--------KMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 611 ILr~~l~~~--------~l~~dvd-L~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
.|+..+... ......+ ++.|+..+.| ||+..++.-...+.
T Consensus 221 aL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 221 ALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 555544432 1112122 6677776655 99999998887775
No 243
>PRK06921 hypothetical protein; Provisional
Probab=98.28 E-value=3.6e-06 Score=92.11 Aligned_cols=68 Identities=31% Similarity=0.362 Sum_probs=47.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcch
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
..+++|+||||||||+|+.|+|+++ +..+++++..++...+.... ......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 5689999999999999999999975 67788888777665432221 1122222222 3456999999944
No 244
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=8.5e-06 Score=91.39 Aligned_cols=130 Identities=19% Similarity=0.271 Sum_probs=91.2
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCC-----------------------EEEEeCchhHHHHhhhhhHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-----------------------FYQMAGSEFVEVLVGVGSARIRDLFK 511 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~p-----------------------fi~vs~sel~~~~vG~~~~~vr~lF~ 511 (938)
.+.|+.+||+||.|+||+.+|+++|..+-+. |+.+.... .+ ...+...+|.+..
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EG--KSITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CC--CcCCHHHHHHHHH
Confidence 3667899999999999999999999965221 22221100 00 0013345666655
Q ss_pred HHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCcc
Q 002307 512 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (938)
Q Consensus 512 ~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpA 587 (938)
.+.. ..-.|++||++|.+.. ..-|.||..++ +++.++++|..|+.++.+-|.
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~----------------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpT 154 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNE----------------------SASNALLKTLE--EPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCH----------------------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHH
Confidence 4432 2235999999999742 34677888887 466778888888889999999
Q ss_pred ccCCCccceEEeccCCChhhHHHHHHH
Q 002307 588 LLRPGRFDRKIRIRAPNAKGRTEILKI 614 (938)
Q Consensus 588 LlRpGRFdr~I~V~lPd~eeR~eILr~ 614 (938)
+++ |. ..+.+++|+.++..+.|..
T Consensus 155 I~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 155 IVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 998 75 5889999999888777754
No 245
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=5.8e-06 Score=93.01 Aligned_cols=132 Identities=23% Similarity=0.334 Sum_probs=87.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCC-------------------------EEEEeCchh---HHH-HhhhhhHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------------------FYQMAGSEF---VEV-LVGVGSARI 506 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------------------fi~vs~sel---~~~-~vG~~~~~v 506 (938)
+.|+.+||+||+|+|||++|+++|+.+.+. |+.++...- .+. ....+...+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 678899999999999999999999976321 222222100 000 001234567
Q ss_pred HHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCC
Q 002307 507 RDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD 582 (938)
Q Consensus 507 r~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd 582 (938)
|++.+.+.. ....|++||+++.+.. ...+.++..++... .++.+|.+|+.++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~----------------------~a~naLLk~LEep~--~~~~~Ilvth~~~ 154 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL----------------------QAANSLLKVLEEPP--PQVVFLLVSHAAD 154 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH----------------------HHHHHHHHHHHhCc--CCCEEEEEeCChH
Confidence 887776643 2335999999998642 22344555555332 3456666888888
Q ss_pred cCCccccCCCccceEEeccCCChhhHHHHHHH
Q 002307 583 LLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 614 (938)
Q Consensus 583 ~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~ 614 (938)
.+.+.+.+ | ...+.+++|+.++..+.|..
T Consensus 155 ~ll~ti~S--R-c~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 155 KVLPTIKS--R-CRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hChHHHHH--H-hhhhcCCCCCHHHHHHHHHh
Confidence 99999887 6 46888999999887777754
No 246
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=3.5e-06 Score=101.04 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccc
Q 002307 272 SSRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIA 320 (938)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~ 320 (938)
+..++.-+..+.+++.+.-++.+|.|+.+.+....+..+..-..++-+.
T Consensus 377 ~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls 425 (716)
T KOG0058|consen 377 STNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLS 425 (716)
T ss_pred HHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888888899999998888887777766555544433
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=1.4e-05 Score=76.50 Aligned_cols=73 Identities=25% Similarity=0.369 Sum_probs=45.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc--------CCCEEEEeCchhH------HHH---hh------hhhHHHHHHHH-HH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA--------GVPFYQMAGSEFV------EVL---VG------VGSARIRDLFK-RA 513 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el--------g~pfi~vs~sel~------~~~---vG------~~~~~vr~lF~-~A 513 (938)
.+.++|+||||+|||++++.++... ..+++.++++... ... .+ .....+.+.+. ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 7788888775433 111 01 11222333333 33
Q ss_pred HhCCCeEEEEcCcchhh
Q 002307 514 KVNKPSVIFIDEIDALA 530 (938)
Q Consensus 514 r~~~P~ILfIDEIDaL~ 530 (938)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 44444599999999963
No 248
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.15 E-value=1.2e-05 Score=94.86 Aligned_cols=223 Identities=18% Similarity=0.229 Sum_probs=127.3
Q ss_pred ccCcccCcHHHHHHHHHHHHH-h-cCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 002307 423 KFSDVAGIDEAVEELQELVRY-L-KNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~-L-k~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG 500 (938)
-|..|.|.+.+|.-+.-.+-- . |... ....++..-+|+|+|.|||||+.+.+++++-+-..++. ++..- .-.|
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~--eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaS--SaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAG--EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKAS--SAAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCC--CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCccc--cccc
Confidence 366789999998876332211 1 1111 23345556689999999999999999999866554433 22110 0011
Q ss_pred hhhHHHHH-----HHHHH---HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC-------
Q 002307 501 VGSARIRD-----LFKRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG------- 565 (938)
Q Consensus 501 ~~~~~vr~-----lF~~A---r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg------- 565 (938)
.+..-+++ ..-.| ......|-.|||+|.+..+.+ . .+++.|+.
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq-------------------v---AihEAMEQQtISIaK 475 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ-------------------V---AIHEAMEQQTISIAK 475 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH-------------------H---HHHHHHHhheehhee
Confidence 11111110 00011 112345899999999754321 1 11222221
Q ss_pred --C--cCCCeEEEEEecCCCC-------------cCCccccCCCccceEE-eccCCChhhHHHHHHHHhcccccCCc---
Q 002307 566 --F--DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKI-RIRAPNAKGRTEILKIHASKVKMSDS--- 624 (938)
Q Consensus 566 --~--~~~~~ViVIAATN~pd-------------~LDpALlRpGRFdr~I-~V~lPd~eeR~eILr~~l~~~~l~~d--- 624 (938)
. .-+.+--||||+|... .+++++++ |||..+ -++-|+...-..|-++.+.....-.+
T Consensus 476 AGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~ 553 (764)
T KOG0480|consen 476 AGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATE 553 (764)
T ss_pred cceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhcccccccc
Confidence 1 1123345789998643 57889999 999754 45778776665555554433211000
Q ss_pred ----cCHH-----------------------------HH--------HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccch
Q 002307 625 ----VDLS-----------------------------SY--------AKNLPGWTGARLAQLVQEAALVAVRKGHESILS 663 (938)
Q Consensus 625 ----vdL~-----------------------------~L--------A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~ 663 (938)
..++ .+ .+.+.+.|.++|+.|++-+-.+|.-.-++.++.
T Consensus 554 ~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~ 633 (764)
T KOG0480|consen 554 RVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTK 633 (764)
T ss_pred ccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccH
Confidence 0000 00 011225678899999998888888888888999
Q ss_pred hhHHHHHHhhc
Q 002307 664 SDMDDAVDRLT 674 (938)
Q Consensus 664 edl~~Ai~rv~ 674 (938)
+|+.+|++-+.
T Consensus 634 ~~v~ea~eLlk 644 (764)
T KOG0480|consen 634 EDVEEAVELLK 644 (764)
T ss_pred HHHHHHHHHHH
Confidence 99998877553
No 249
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.14 E-value=1.1e-05 Score=97.62 Aligned_cols=220 Identities=21% Similarity=0.247 Sum_probs=125.7
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhh--ccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE-eCchhHHHHhhh
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFD--KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM-AGSEFVEVLVGV 501 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~--~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v-s~sel~~~~vG~ 501 (938)
..|-|++.+|+.+.=. .+.-..... ...++..-+|||.|.||||||.|.+.+++-+-..++.- .++. -+|.
T Consensus 286 PsIyG~e~VKkAilLq--LfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILLQ--LFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGL 359 (682)
T ss_pred ccccCcHHHHHHHHHH--hcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCc
Confidence 4578999988877322 222221111 11234446799999999999999999999876554432 1111 1222
Q ss_pred hhHHHHHHH--H---HH---HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC--------
Q 002307 502 GSARIRDLF--K---RA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-------- 565 (938)
Q Consensus 502 ~~~~vr~lF--~---~A---r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg-------- 565 (938)
++..+++-+ + .| -...++|++|||+|.+... .. +.+...|+.
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~-------------------dr---~aihEaMEQQtIsIaKA 417 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE-------------------DR---VAIHEAMEQQTISIAKA 417 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH-------------------HH---HHHHHHHHhcEeeeccc
Confidence 222222222 0 11 1234679999999986422 11 122222221
Q ss_pred -C--cCCCeEEEEEecCCCC-------------cCCccccCCCccceEEec-cCCChhhHHHHHHHHhcccc--------
Q 002307 566 -F--DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHASKVK-------- 620 (938)
Q Consensus 566 -~--~~~~~ViVIAATN~pd-------------~LDpALlRpGRFdr~I~V-~lPd~eeR~eILr~~l~~~~-------- 620 (938)
+ .-+...-|+||+|... .|+++|++ |||..+-+ ..|+.+.-..|.++.+..+.
T Consensus 418 GI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~ 495 (682)
T COG1241 418 GITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETI 495 (682)
T ss_pred ceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccc
Confidence 1 1123456888999754 57889999 99987665 45766544443333322211
Q ss_pred --------------------------cCCcc---CHHHHH---------------hhCCCCCHHHHHHHHHHHHHHHHHh
Q 002307 621 --------------------------MSDSV---DLSSYA---------------KNLPGWTGARLAQLVQEAALVAVRK 656 (938)
Q Consensus 621 --------------------------l~~dv---dL~~LA---------------~~t~GfSgaDL~~Lv~eA~l~A~r~ 656 (938)
..+.+ ..+.+. ..+...|.++|+.+++-|-..|..+
T Consensus 496 ~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~r 575 (682)
T COG1241 496 SLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMR 575 (682)
T ss_pred ccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhh
Confidence 00000 001110 0112357889999999999888888
Q ss_pred CCcccchhhHHHHHHhhc
Q 002307 657 GHESILSSDMDDAVDRLT 674 (938)
Q Consensus 657 ~~~~It~edl~~Ai~rv~ 674 (938)
-++.++.+|+.+|+.-+.
T Consensus 576 LS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 576 LSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 888999999999987654
No 250
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.14 E-value=1.5e-05 Score=97.94 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=26.0
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++++..+.|+||+|+|||||++.+++.
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677788999999999999999999984
No 251
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.12 E-value=9.1e-06 Score=97.69 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=25.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++++.-+.|+||+|+|||+|++.+++..
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345667779999999999999999999843
No 252
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.11 E-value=7.6e-06 Score=100.77 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccccccchhhhhhhhhhHhhhHHHHHHhhc
Q 002307 273 SRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSG 347 (938)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (938)
+.++..++.+++++.+++++..|.++.+.+++....+.....++..+...+. .........+++.+.++
T Consensus 383 ~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~------~~~~~~~~~~ri~~il~ 451 (710)
T TIGR03796 383 PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGG------TLQELEGDLNRLDDVLR 451 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHc
Confidence 3455667788888999999999999999888777666655544444433332 33344444455555543
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.10 E-value=1.2e-05 Score=78.52 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=48.8
Q ss_pred EEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHh----------------------hh--hhHHHHHHHHHH
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV----------------------GV--GSARIRDLFKRA 513 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~v----------------------G~--~~~~vr~lF~~A 513 (938)
++|+||||+|||++++.++..+ +.++++++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777776654332110 00 011112234555
Q ss_pred HhCCCeEEEEcCcchhhhh
Q 002307 514 KVNKPSVIFIDEIDALATR 532 (938)
Q Consensus 514 r~~~P~ILfIDEIDaL~~~ 532 (938)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678889999999998654
No 254
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.09 E-value=7.6e-06 Score=100.80 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeeccccc
Q 002307 274 RLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIAR 321 (938)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~ 321 (938)
.++.-++.+++++.+++++..|.++.+.+++....+...+.++..+..
T Consensus 386 ~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~ 433 (708)
T TIGR01193 386 AVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIIN 433 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446677788889999999999998888776666655555444433
No 255
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.07 E-value=8.6e-06 Score=100.09 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeeccc
Q 002307 274 RLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPI 319 (938)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~ 319 (938)
.++.-++.+++++.+++++..|.++.+.+++....+...+.++..+
T Consensus 376 ~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l 421 (694)
T TIGR03375 376 QFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQL 421 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888889999999888777666665544443333
No 256
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.04 E-value=2e-05 Score=94.89 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++++..+.|.||+|+|||+|++.+++..
T Consensus 360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3446777789999999999999999999843
No 257
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.04 E-value=1.4e-05 Score=96.48 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeee
Q 002307 273 SRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYV 315 (938)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 315 (938)
+.++.-++++++++.+++++..|.++.+.+++....+...+.+
T Consensus 246 ~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~ 288 (588)
T PRK13657 246 NRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGR 288 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 3455567777888888899999999999888776666554443
No 258
>PF05729 NACHT: NACHT domain
Probab=98.03 E-value=5.5e-05 Score=74.50 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=74.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcC--------CC-EEEEeCchhHHH---------H---hhhhhHHHHH-HHHHHHhCC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAG--------VP-FYQMAGSEFVEV---------L---VGVGSARIRD-LFKRAKVNK 517 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg--------~p-fi~vs~sel~~~---------~---vG~~~~~vr~-lF~~Ar~~~ 517 (938)
-++|+|+||+|||++++.++.... .+ ++.+++.+.... . .......... ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 479999999999999999987551 12 223333322211 1 0111111122 222334556
Q ss_pred CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceE
Q 002307 518 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRK 597 (938)
Q Consensus 518 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~ 597 (938)
..+|+||.+|.+....+. .........+.+++.. ....+..++|.+.+.....+...+.. ...
T Consensus 82 ~~llilDglDE~~~~~~~-----------~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----------QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred ceEEEEechHhcccchhh-----------hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 779999999998753211 0111122333344432 01222333333222222122222322 156
Q ss_pred EeccCCChhhHHHHHHHHhcc
Q 002307 598 IRIRAPNAKGRTEILKIHASK 618 (938)
Q Consensus 598 I~V~lPd~eeR~eILr~~l~~ 618 (938)
+.+...+.++..++++.+++.
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEECCCCHHHHHHHHHHHhhc
Confidence 888888999999999988764
No 259
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.03 E-value=9.7e-07 Score=99.41 Aligned_cols=218 Identities=20% Similarity=0.256 Sum_probs=112.4
Q ss_pred CcccCcHHHHHHHHH-HHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhh--
Q 002307 425 SDVAGIDEAVEELQE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGV-- 501 (938)
Q Consensus 425 ~dVvG~deak~eL~e-iV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~-- 501 (938)
.+|.|.+.+|..+.= ++........ .....+..-++||+|.||||||.|.+.++.-+...+ ++++..... .|.
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~--~gLta 99 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSA--AGLTA 99 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTC--CCCCE
T ss_pred CcCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCccc--CCccc
Confidence 347899888776621 1111100000 001123345799999999999999998866543333 333221100 000
Q ss_pred --------hhHHHH-HHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC----c-
Q 002307 502 --------GSARIR-DLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF----D- 567 (938)
Q Consensus 502 --------~~~~vr-~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~----~- 567 (938)
++-.+. ..+-.| ...|++|||+|.+... ....|++.|+.- .
T Consensus 100 ~~~~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~~----------------------~~~~l~eaMEqq~isi~k 154 (331)
T PF00493_consen 100 SVSRDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKED----------------------DRDALHEAMEQQTISIAK 154 (331)
T ss_dssp EECCCGGTSSECEEE-HHHHC---TTSEEEECTTTT--CH----------------------HHHHHHHHHHCSCEEECT
T ss_pred eeccccccceeEEeCCchhcc---cCceeeecccccccch----------------------HHHHHHHHHHcCeeccch
Confidence 000000 122233 3459999999996432 123444444421 1
Q ss_pred ------CCCeEEEEEecCCCC-------------cCCccccCCCccceEEec-cCCChhhHHHHHHHHhcccccCC----
Q 002307 568 ------TGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHASKVKMSD---- 623 (938)
Q Consensus 568 ------~~~~ViVIAATN~pd-------------~LDpALlRpGRFdr~I~V-~lPd~eeR~eILr~~l~~~~l~~---- 623 (938)
-+.+.-|+||+|... .+++.|++ |||..+.+ +.|+.+.-..+-++.+.......
T Consensus 155 agi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~ 232 (331)
T PF00493_consen 155 AGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKE 232 (331)
T ss_dssp SSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S----
T ss_pred hhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecccccccccc
Confidence 123467899999754 47889998 99988765 56776666556555544321110
Q ss_pred --------ccC------HHHHHhh------------------------------CCCCCHHHHHHHHHHHHHHHHHhCCc
Q 002307 624 --------SVD------LSSYAKN------------------------------LPGWTGARLAQLVQEAALVAVRKGHE 659 (938)
Q Consensus 624 --------dvd------L~~LA~~------------------------------t~GfSgaDL~~Lv~eA~l~A~r~~~~ 659 (938)
..+ +-.+|+. ....|.+.|+.+++-|...|.-+-+.
T Consensus 233 ~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~ 312 (331)
T PF00493_consen 233 KKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRD 312 (331)
T ss_dssp ----SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSS
T ss_pred ccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccC
Confidence 000 1112220 11346678899999999999888999
Q ss_pred ccchhhHHHHHHhh
Q 002307 660 SILSSDMDDAVDRL 673 (938)
Q Consensus 660 ~It~edl~~Ai~rv 673 (938)
.|+.+|+..|+.-+
T Consensus 313 ~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 313 EVTEEDVEEAIRLF 326 (331)
T ss_dssp ECSHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHH
Confidence 99999999998744
No 260
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.03 E-value=1.7e-05 Score=95.03 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccccccchhhhhhhhhhHhhhHHHHHHhh
Q 002307 274 RLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLS 346 (938)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (938)
.+..-++.+.+++.+++++..|.++.+.+++....+...+.++..+..-+. -.......++++.+.+
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~------~~~~~~~~~~ri~~~l 311 (571)
T TIGR02203 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNA------PMQRGLAAAESLFTLL 311 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 344446677788888888899999999888887777776655555544333 3333334444555544
No 261
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.02 E-value=1.3e-05 Score=98.90 Aligned_cols=48 Identities=10% Similarity=-0.006 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeeccccc
Q 002307 274 RLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIAR 321 (938)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~ 321 (938)
.++.-++.+++++.+++++..|.++.+.++.....+.....++..+..
T Consensus 392 ~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~ 439 (711)
T TIGR00958 392 SVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSY 439 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777888888999999998888877777766665554444
No 262
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.02 E-value=0.00011 Score=80.01 Aligned_cols=177 Identities=20% Similarity=0.232 Sum_probs=113.1
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-C--CCEEE---------
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-G--VPFYQ--------- 488 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-g--~pfi~--------- 488 (938)
+-+++.+.+.++..+.|..+...-. -.++++|||+|+||-+.+.++-+++ | ++=+.
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~~d------------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSSTGD------------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcccCC------------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 3456778888888888876643111 1268999999999999999998876 2 11111
Q ss_pred ---------EeCchhHH---HHhhhh-hHHHHHHHHHHHhCCC---------eEEEEcCcchhhhhhcCccCCcchhhhh
Q 002307 489 ---------MAGSEFVE---VLVGVG-SARIRDLFKRAKVNKP---------SVIFIDEIDALATRRQGIFKDTTDHLYN 546 (938)
Q Consensus 489 ---------vs~sel~~---~~vG~~-~~~vr~lF~~Ar~~~P---------~ILfIDEIDaL~~~r~~~~~~~~~~~~~ 546 (938)
++...-++ .-.|.. .-.+.++++.....+| .+|+|.|.|.|..+.|
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ------------ 144 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ------------ 144 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH------------
Confidence 11100000 001211 2234555555433332 4899999999875522
Q ss_pred hhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC
Q 002307 547 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD 626 (938)
Q Consensus 547 ~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd 626 (938)
....+++.. + .+++.+|..+|....+-+++++ | +..|.++.|+.++-..++...+.+.++.-..+
T Consensus 145 ---~aLRRTMEk-------Y--s~~~RlIl~cns~SriIepIrS--R-Cl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 145 ---HALRRTMEK-------Y--SSNCRLILVCNSTSRIIEPIRS--R-CLFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred ---HHHHHHHHH-------H--hcCceEEEEecCcccchhHHhh--h-eeEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 123333332 2 2456777788998999999988 6 45789999999999999999998877664433
Q ss_pred -HHHHHhhCCC
Q 002307 627 -LSSYAKNLPG 636 (938)
Q Consensus 627 -L~~LA~~t~G 636 (938)
+.++|+.+.|
T Consensus 210 ~l~rIa~kS~~ 220 (351)
T KOG2035|consen 210 LLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHhcc
Confidence 5677777665
No 263
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.01 E-value=1.4e-05 Score=98.36 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeeccccc
Q 002307 274 RLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIAR 321 (938)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~ 321 (938)
.++..++++++++.+++++..|.++.+.+++....+...+.++..+..
T Consensus 369 ~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~ 416 (694)
T TIGR01846 369 ELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQ 416 (694)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888889999999999998887766666555444444433
No 264
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.01 E-value=3.5e-05 Score=80.42 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=52.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhH-HHHhhh----------------------hhHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV-EVLVGV----------------------GSARIR 507 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~-~~~vG~----------------------~~~~vr 507 (938)
|+..+.-++|+||||+|||+++..++.+. +.+.++++..++. ..+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 56666779999999999999999988644 6678888876421 111110 011133
Q ss_pred HHHHHHHhCCCeEEEEcCcchhhh
Q 002307 508 DLFKRAKVNKPSVIFIDEIDALAT 531 (938)
Q Consensus 508 ~lF~~Ar~~~P~ILfIDEIDaL~~ 531 (938)
.+...+....|++|+||-|.++..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 334444555789999999999864
No 265
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=2.4e-05 Score=87.60 Aligned_cols=139 Identities=24% Similarity=0.321 Sum_probs=82.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCE-EEEeCchhHHH-------HhhhhhHHHHHHHHHHHhCCCeEEEEcCc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-YQMAGSEFVEV-------LVGVGSARIRDLFKRAKVNKPSVIFIDEI 526 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pf-i~vs~sel~~~-------~vG~~~~~vr~lF~~Ar~~~P~ILfIDEI 526 (938)
..+++|+.|||+-|.|||+|.-..-..+..+- ..+.-..|+.. ..|.. .-+..+-.. ....-.||++||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~-~~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADE-LAAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHH-HHhcCCEEEeeee
Confidence 34789999999999999999999988774432 22222333322 22222 111111111 1122349999998
Q ss_pred chhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCC-CCcCCccccCCCccceEEeccCCCh
Q 002307 527 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPGRFDRKIRIRAPNA 605 (938)
Q Consensus 527 DaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~-pd~LDpALlRpGRFdr~I~V~lPd~ 605 (938)
.. .+-...-.+..|+.+|- ..+|++++|+|. |+.|-+.=+...|| + |
T Consensus 140 ~V-------------------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~F-----L--P-- 187 (367)
T COG1485 140 EV-------------------TDIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERF-----L--P-- 187 (367)
T ss_pred ee-------------------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhh-----H--H--
Confidence 75 12223345677777763 358999999996 44443322221344 2 2
Q ss_pred hhHHHHHHHHhcccccCCccCHHH
Q 002307 606 KGRTEILKIHASKVKMSDSVDLSS 629 (938)
Q Consensus 606 eeR~eILr~~l~~~~l~~dvdL~~ 629 (938)
-.++++.++.-+.++...|+..
T Consensus 188 --~I~li~~~~~v~~vD~~~DYR~ 209 (367)
T COG1485 188 --AIDLIKSHFEVVNVDGPVDYRL 209 (367)
T ss_pred --HHHHHHHheEEEEecCCccccc
Confidence 2478889988888887777643
No 266
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.00 E-value=1.5e-05 Score=87.55 Aligned_cols=139 Identities=24% Similarity=0.312 Sum_probs=76.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCC-C--EEEEeCchhHHHHhhhhhHHHHHHHHHH-----------HhCCCeEEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGV-P--FYQMAGSEFVEVLVGVGSARIRDLFKRA-----------KVNKPSVIFI 523 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~-p--fi~vs~sel~~~~vG~~~~~vr~lF~~A-----------r~~~P~ILfI 523 (938)
.+++||+||+|||||++++.+-.+..- . ...++++.... ...++.+++.. ...+.+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 458999999999999999988776532 2 23344443211 12222222211 1123469999
Q ss_pred cCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-------CCeEEEEEecCCCC---cCCccccCCCc
Q 002307 524 DEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-------GKGVIFLAATNRRD---LLDPALLRPGR 593 (938)
Q Consensus 524 DEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-------~~~ViVIAATN~pd---~LDpALlRpGR 593 (938)
||+..-..+.- +.+.....+.|++..---++. -.++.++||+|... .+++.++| .
T Consensus 107 DDlN~p~~d~y-------------gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 107 DDLNMPQPDKY-------------GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp ETTT-S---TT-------------S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred cccCCCCCCCC-------------CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 99987433221 112223455555543211121 13478888888532 46777776 4
Q ss_pred cceEEeccCCChhhHHHHHHHHhcc
Q 002307 594 FDRKIRIRAPNAKGRTEILKIHASK 618 (938)
Q Consensus 594 Fdr~I~V~lPd~eeR~eILr~~l~~ 618 (938)
| ..+.++.|+.+....|+...+..
T Consensus 172 f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 172 F-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E-EEEE----TCCHHHHHHHHHHHH
T ss_pred e-EEEEecCCChHHHHHHHHHHHhh
Confidence 4 48889999999999988776653
No 267
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.99 E-value=0.00018 Score=78.17 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=86.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh--cCCCE---EEEeCc------hhHHHH---hhh---------hhHHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGE--AGVPF---YQMAGS------EFVEVL---VGV---------GSARIRDLFKRA 513 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~e--lg~pf---i~vs~s------el~~~~---vG~---------~~~~vr~lF~~A 513 (938)
..+-|.|+|++|+|||+||+.++++ ....| +.++.+ .+.... .+. ........+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4457899999999999999999987 33322 222221 111111 111 122233444445
Q ss_pred HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCc
Q 002307 514 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGR 593 (938)
Q Consensus 514 r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGR 593 (938)
....+++|+||+++... .+..+...+... ..+..||.||...... .... .
T Consensus 98 L~~~~~LlVlDdv~~~~------------------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~-~~~~---~ 147 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE------------------------DLEELREPLPSF--SSGSKILVTTRDRSVA-GSLG---G 147 (287)
T ss_dssp HCCTSEEEEEEEE-SHH------------------------HH-------HCH--HSS-EEEEEESCGGGG-TTHH---S
T ss_pred hccccceeeeeeecccc------------------------cccccccccccc--cccccccccccccccc-cccc---c
Confidence 55669999999987632 122222222111 1234555577653322 1111 1
Q ss_pred cceEEeccCCChhhHHHHHHHHhccccc---C-CccCHHHHHhhCCCCCHHHHHHHH
Q 002307 594 FDRKIRIRAPNAKGRTEILKIHASKVKM---S-DSVDLSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 594 Fdr~I~V~lPd~eeR~eILr~~l~~~~l---~-~dvdL~~LA~~t~GfSgaDL~~Lv 646 (938)
-+..++++..+.++-.++|......... . ......++++.+.| .|-.|..+.
T Consensus 148 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 148 TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 1568899999999999999998765441 1 12225678888877 576666553
No 268
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.99 E-value=8.2e-05 Score=88.63 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=85.6
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccC-CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhH
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSA 504 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG-~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~ 504 (938)
.|.|+|.+|+-|.=.+--=.+ ..+..-| .+..-+|||+|.||||||.+.+.+++-+..-.+ .++.. +..+|.++.
T Consensus 430 sIye~edvKkglLLqLfGGt~-k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTR-KEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHhcCCc-ccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceee
Confidence 367888887766322111111 1111212 344457999999999999999999987644333 22211 001111111
Q ss_pred H-----HHHHHHHH---HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHH-HHHHHHHHHHhcCC--cCCCeEE
Q 002307 505 R-----IRDLFKRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER-ETTLNQLLIELDGF--DTGKGVI 573 (938)
Q Consensus 505 ~-----vr~lF~~A---r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~-~~~LnqLL~eLDg~--~~~~~Vi 573 (938)
. -+++.-+. -.....|-+|||+|.+....... .++-. +++++- ...|+ .-+.+.-
T Consensus 506 Vtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSv-----------LhEvMEQQTvSI---AKAGII~sLNAR~S 571 (804)
T KOG0478|consen 506 VTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSV-----------LHEVMEQQTLSI---AKAGIIASLNARCS 571 (804)
T ss_pred EEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHH-----------HHHHHHHhhhhH---hhcceeeeccccce
Confidence 0 01111111 11234588999999984332110 11111 111111 11122 1234567
Q ss_pred EEEecCCCC-------------cCCccccCCCccceEEe-ccCCChhhHHHHH
Q 002307 574 FLAATNRRD-------------LLDPALLRPGRFDRKIR-IRAPNAKGRTEIL 612 (938)
Q Consensus 574 VIAATN~pd-------------~LDpALlRpGRFdr~I~-V~lPd~eeR~eIL 612 (938)
|+|++|... .|+|.|++ |||.++- ++.||...-+.|-
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La 622 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLA 622 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHH
Confidence 899999532 58899999 9997654 4667776333333
No 269
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.98 E-value=2.4e-05 Score=94.19 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeec
Q 002307 275 LMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVW 317 (938)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 317 (938)
++.-++.+.+++.+++++..|.++.+.++.....+.....++.
T Consensus 229 ~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~ 271 (569)
T PRK10789 229 IAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPML 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3444566667778888899999988888776666665544433
No 270
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.98 E-value=3.4e-05 Score=91.74 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=25.6
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++++.-+.|+||+|+|||+|++.+++.
T Consensus 342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344667778999999999999999999983
No 271
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.97 E-value=2.4e-05 Score=94.57 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=25.9
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++++..+.|.||+|+|||+|++.+++..
T Consensus 355 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 355 SFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 3445677789999999999999999998843
No 272
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.95 E-value=0.00011 Score=95.31 Aligned_cols=159 Identities=21% Similarity=0.314 Sum_probs=91.1
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCE---EEEeCc---h
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF---YQMAGS---E 493 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pf---i~vs~s---e 493 (938)
+...+++++|.+..++++...+.. .....+-+-|+|++|+|||+||+++++.....| +.++.. .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 344688999999998888776531 223345689999999999999999988774433 111110 0
Q ss_pred hHHHH-----------hhhhhHHHH-------------HHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhh
Q 002307 494 FVEVL-----------VGVGSARIR-------------DLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (938)
Q Consensus 494 l~~~~-----------vG~~~~~vr-------------~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~ 549 (938)
....+ .......+. ..+......++.+|+||++|..
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------------- 308 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------------- 308 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------------
Confidence 00000 000000000 1122223356778999998752
Q ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhccc
Q 002307 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV 619 (938)
Q Consensus 550 ~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~ 619 (938)
..+..+....+.+. .+-.||.||...+. ++....++.+.++.|+.++..+++..++.+.
T Consensus 309 ----~~l~~L~~~~~~~~--~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 309 ----DVLDALAGQTQWFG--SGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred ----HHHHHHHhhCccCC--CCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence 11223322222222 23344446664333 2223467889999999999999999887543
No 273
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.0003 Score=76.02 Aligned_cols=183 Identities=19% Similarity=0.262 Sum_probs=113.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcC---CCEEEEeCc-----hhHHHHhhhh------------hHHHHHHHHHHH-hCCC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGS-----EFVEVLVGVG------------SARIRDLFKRAK-VNKP 518 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg---~pfi~vs~s-----el~~~~vG~~------------~~~vr~lF~~Ar-~~~P 518 (938)
-+.++|+.|+|||+++||+....+ +..++++.. .+...++... +..-+.+.+..+ ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 367999999999999997776553 223444432 2333222221 122223333333 3466
Q ss_pred eEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc-CCcCCCeEEEEEecCCCCcCCccccCC------
Q 002307 519 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-GFDTGKGVIFLAATNRRDLLDPALLRP------ 591 (938)
Q Consensus 519 ~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD-g~~~~~~ViVIAATN~pd~LDpALlRp------ 591 (938)
.++++||.+.+.... -..+ .++.+++ .....-.++.|+-.. |.+.+++|
T Consensus 133 v~l~vdEah~L~~~~-------------------le~L-rll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~ 188 (269)
T COG3267 133 VVLMVDEAHDLNDSA-------------------LEAL-RLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELE 188 (269)
T ss_pred eEEeehhHhhhChhH-------------------HHHH-HHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhh
Confidence 899999999875331 1122 2333332 222223355554332 33322221
Q ss_pred CccceEEeccCCChhhHHHHHHHHhcccccC----CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHH
Q 002307 592 GRFDRKIRIRAPNAKGRTEILKIHASKVKMS----DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 667 (938)
Q Consensus 592 GRFdr~I~V~lPd~eeR~eILr~~l~~~~l~----~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~ 667 (938)
-|++..|++++.+.++-...++++++.-... .+-.+..+...+.| .|+-+.++|..|...|...+...|+...+.
T Consensus 189 ~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 189 QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 1777778888889888889999998875433 33336677788888 699999999999999999888888776543
No 274
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.95 E-value=9.4e-06 Score=93.46 Aligned_cols=231 Identities=22% Similarity=0.231 Sum_probs=132.9
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEe-CchhHHHHhhhhhH
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA-GSEFVEVLVGVGSA 504 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs-~sel~~~~vG~~~~ 504 (938)
+|.|++++|+.|.-++.---+...-+.+.++..-+|+|.|.||+.||.|.+.+.+-+-...+... +|.- +|.++.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG----VGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG----VGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc----cccchh
Confidence 58899999999865544322222223444566668999999999999999999987765554432 2211 333333
Q ss_pred HHHHHHHH-------H-HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHH-HHHHHHHHHhcCCc--CCCeEE
Q 002307 505 RIRDLFKR-------A-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE-TTLNQLLIELDGFD--TGKGVI 573 (938)
Q Consensus 505 ~vr~lF~~-------A-r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~-~~LnqLL~eLDg~~--~~~~Vi 573 (938)
-+++-... | -.....|-+|||+|.+....... .++-.+ +++.- .-.|+. -+.+.-
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA-----------IHEVMEQQTISI---aKAGI~TtLNAR~s 484 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA-----------IHEVMEQQTISI---AKAGINTTLNARTS 484 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHH-----------HHHHHHhhhhhh---hhhccccchhhhHH
Confidence 33321110 0 01133588999999975332111 111111 11110 011221 134567
Q ss_pred EEEecCCCC-------------cCCccccCCCccceEEec-cCCChhhHHHHHHHHh----cccccC---CccCH-----
Q 002307 574 FLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHA----SKVKMS---DSVDL----- 627 (938)
Q Consensus 574 VIAATN~pd-------------~LDpALlRpGRFdr~I~V-~lPd~eeR~eILr~~l----~~~~l~---~dvdL----- 627 (938)
|+||.|... .|+.||++ |||...-+ +.||.+.-..+-+|.. ....-. ..++.
T Consensus 485 ILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~ 562 (721)
T KOG0482|consen 485 ILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRR 562 (721)
T ss_pred hhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHH
Confidence 888888632 68999999 99975443 5687766555444332 111000 00111
Q ss_pred ---------------------------HHHHhh--CC-CCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccC
Q 002307 628 ---------------------------SSYAKN--LP-GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 628 ---------------------------~~LA~~--t~-GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g 676 (938)
.+=++. .. -.|++.|-.+++-+..+|.-+-.+.+..+|+++|+.-....
T Consensus 563 yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 563 YISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 000110 11 23678888999999888988888999999999999876553
No 275
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.94 E-value=3.8e-05 Score=91.84 Aligned_cols=66 Identities=6% Similarity=-0.038 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccccccchhhhhhhhhhHhhhHHHHHHhh
Q 002307 275 LMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLS 346 (938)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (938)
++.-++.+++++.+++++..|.++.+.+++....+...+.++..+...+. .+.......+++.+.+
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~------~~~~~~~~~~ri~~~l 298 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWK------QFSGARQAYKRLNELL 298 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 44445666777888888999999999888877776666555554444333 3333444445555544
No 276
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.90 E-value=4.1e-05 Score=91.95 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++++.-++|.||+|+|||+|++.+++..
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3456777889999999999999999999844
No 277
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.87 E-value=0.00032 Score=82.24 Aligned_cols=172 Identities=16% Similarity=0.239 Sum_probs=88.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc-------------hhHHHHhhhhhHHHHHHHHHHH-----------
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-------------EFVEVLVGVGSARIRDLFKRAK----------- 514 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s-------------el~~~~vG~~~~~vr~lF~~Ar----------- 514 (938)
+-+||+||+|||||+.++.++.++|..++.-+.. .+........-.........+.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 4588999999999999999999999877665411 1111111111111122222221
Q ss_pred -hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCC--
Q 002307 515 -VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRP-- 591 (938)
Q Consensus 515 -~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRp-- 591 (938)
...+.+|+|||+-...... ....+...|.++-....-.-|++|.-++.++..++..+.+
T Consensus 191 ~~~~~~liLveDLPn~~~~d------------------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d 252 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD------------------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKD 252 (634)
T ss_pred cccCceEEEeeccchhhhhh------------------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhh
Confidence 2356699999997654321 1222333333332222222233332233333333332221
Q ss_pred ----CccceEEeccCCChhhHHHHHHHHhcccccC-------CccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 592 ----GRFDRKIRIRAPNAKGRTEILKIHASKVKMS-------DSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 592 ----GRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-------~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
.|+. .|.|.+-...-.+..|+..+...... ....++.++... ++||+..++...+.+
T Consensus 253 ~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 253 IQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred hhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 1333 56676655555555555555432211 122244455444 459999999887776
No 278
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.86 E-value=0.00014 Score=82.62 Aligned_cols=160 Identities=20% Similarity=0.305 Sum_probs=92.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEE---EEeCchhHHHH-------hhh-hh-----------HHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY---QMAGSEFVEVL-------VGV-GS-----------ARIRDLFKR 512 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi---~vs~sel~~~~-------vG~-~~-----------~~vr~lF~~ 512 (938)
-.+|+|++|||.-|||||+|.-.+-..+.. .. .+.-.+|+... ... +. .-+. .++.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~-~vA~ 188 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLP-VVAD 188 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccH-HHHH
Confidence 356999999999999999999988754422 11 11112222210 000 00 0000 1111
Q ss_pred HHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCC-CCcCCc-cccC
Q 002307 513 AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDP-ALLR 590 (938)
Q Consensus 513 Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~-pd~LDp-ALlR 590 (938)
-.....++|++||+..- +-...-.+++|...|- ..+|+++||+|+ |+.|-. .+.|
T Consensus 189 eIa~ea~lLCFDEfQVT-------------------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR 245 (467)
T KOG2383|consen 189 EIAEEAILLCFDEFQVT-------------------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQR 245 (467)
T ss_pred HHhhhceeeeechhhhh-------------------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhh
Confidence 11223579999998652 1122345666666552 358999999998 555543 3333
Q ss_pred CCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCC-C--CCH-HHHHHHHHHHHH
Q 002307 591 PGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP-G--WTG-ARLAQLVQEAAL 651 (938)
Q Consensus 591 pGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~-G--fSg-aDL~~Lv~eA~l 651 (938)
...+ --..+|+.++.-+.+...+|+...++... + |.+ .|...++++-..
T Consensus 246 ------~~F~------PfI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 246 ------ENFI------PFIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred ------hhhh------hHHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 2222 13578999999999999999984443322 1 333 488888877663
No 279
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.83 E-value=0.00017 Score=77.60 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=72.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 538 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~ 538 (938)
.+..++||+|||||..+|++|..+|.+++.++|++..+ ...+..+|.-+... .+.+++||++.+....
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~v----- 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEV----- 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHH-----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHH-----
Confidence 46789999999999999999999999999999997554 33455666544433 4699999999875431
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHhcCC-----------cCCCeEEEEEecCC----CCcCCccccCCCccceEEeccCC
Q 002307 539 DTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNR----RDLLDPALLRPGRFDRKIRIRAP 603 (938)
Q Consensus 539 ~~~~~~~~~~~~e~~~~LnqLL~eLDg~-----------~~~~~ViVIAATN~----pd~LDpALlRpGRFdr~I~V~lP 603 (938)
-....+.+..+...+..- .-+.+.-++.|.|. ...||+.|+. +-|-+.+..|
T Consensus 101 ----------LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~P 167 (231)
T PF12774_consen 101 ----------LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVP 167 (231)
T ss_dssp ----------HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S-
T ss_pred ----------HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCC
Confidence 111112222222222110 11123344556663 3478888865 4578889999
Q ss_pred ChhhHHHHH
Q 002307 604 NAKGRTEIL 612 (938)
Q Consensus 604 d~eeR~eIL 612 (938)
|...-.+++
T Consensus 168 D~~~I~ei~ 176 (231)
T PF12774_consen 168 DLSLIAEIL 176 (231)
T ss_dssp -HHHHHHHH
T ss_pred CHHHHHHHH
Confidence 987554443
No 280
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.82 E-value=6.2e-05 Score=90.44 Aligned_cols=136 Identities=17% Similarity=0.263 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccccccchhhhhhhhhhHhhhHHHHHHhhcCCCc
Q 002307 272 SSRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSGEGGI 351 (938)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (938)
...++..++.+.+++.+++.+..|.+..+.+++....+...+.++..+..... .+.......+++.+.++....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~a~~ri~~~l~~~~~ 314 (567)
T COG1132 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVS------LLQRASAAAERLFELLDEEPE 314 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHcCCcc
Confidence 44566777888888888888888888888877777777666665554444333 222233333555554443211
Q ss_pred cccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccccccccccccCCCCcccCccc-Cc
Q 002307 352 LSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVA-GI 430 (938)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVv-G~ 430 (938)
...... . .......+.|++|. ++
T Consensus 315 ~~~~~~----------------------------------------------~----------~~~~~~~I~f~~vsf~y 338 (567)
T COG1132 315 VEDPPD----------------------------------------------P----------LKDTIGSIEFENVSFSY 338 (567)
T ss_pred ccCCCC----------------------------------------------C----------CCCCCCeEEEEEEEEEc
Confidence 111000 0 01111235666664 44
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 431 DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 431 deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
+.-+..++++ .+.++++.-+.|+||+|+|||++++.+.+
T Consensus 339 ~~~~~vl~~i-----------s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r 377 (567)
T COG1132 339 PGKKPVLKDI-----------SFSIEPGEKVAIVGPSGSGKSTLIKLLLR 377 (567)
T ss_pred CCCCccccCc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4311112111 33466777799999999999999999998
No 281
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.81 E-value=5.1e-05 Score=91.47 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++++.-+.|+||+|+|||+|++.+++..
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3446777789999999999999999998854
No 282
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.80 E-value=4.9e-05 Score=91.72 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=26.4
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++++..+.|+|++|+|||+|++.+++..
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3446777789999999999999999999844
No 283
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=3.3e-05 Score=83.15 Aligned_cols=26 Identities=38% Similarity=0.735 Sum_probs=22.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
+..+.-|-|.||+|||||||.+.+|+
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44445599999999999999999998
No 284
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.77 E-value=0.00023 Score=72.37 Aligned_cols=71 Identities=30% Similarity=0.327 Sum_probs=46.3
Q ss_pred EEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHh------hhh-----------------------hH----
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GVG-----------------------SA---- 504 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~v------G~~-----------------------~~---- 504 (938)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |.. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999886643 67777777543222110 100 00
Q ss_pred -HHHHHHHHHHhCCCeEEEEcCcchhhh
Q 002307 505 -RIRDLFKRAKVNKPSVIFIDEIDALAT 531 (938)
Q Consensus 505 -~vr~lF~~Ar~~~P~ILfIDEIDaL~~ 531 (938)
.+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 013344444567899999999988753
No 285
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.73 E-value=4e-05 Score=88.97 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeeccc
Q 002307 272 SSRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPI 319 (938)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~ 319 (938)
+-|+++.. +++..+||+++.|.++.++.+..++.+.....++.-.
T Consensus 251 ~~Rm~lQs---~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~a 295 (580)
T COG4618 251 ALRMALQS---AVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLA 295 (580)
T ss_pred HHHHHHHH---HHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHH
Confidence 34555554 4567899999999999999999888776655544433
No 286
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.73 E-value=2.1e-05 Score=90.49 Aligned_cols=255 Identities=21% Similarity=0.258 Sum_probs=140.5
Q ss_pred cccccccccccccchHHHHhhhhcccCcccHHHHHHhhhccceeEEeecCcccccccc----------------------
Q 002307 146 KLYVPEQVFGHELSEEEEFHKNVKELPKMSIEEFKKYMESDKVKLLTSKGINGVAFAN---------------------- 203 (938)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 203 (938)
-|++|.|-|..+--|-|-|.. |-++|+. |---=+.|+|--+..||.+...+.+
T Consensus 281 fLWi~VqQyttR~ie~~lfrH----lh~LSlr-wHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF~~ 355 (790)
T KOG0056|consen 281 FLWIPVQQYTTREIETELFRH----LHNLSLR-WHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFI 355 (790)
T ss_pred eEEEEhhHhHHHHHHHHHHHH----HHhhcee-eeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhhhh
Confidence 389999999887666666532 3334442 2223356888888888887765221
Q ss_pred ---cccceeEEecc-----CCCcccccccc--cceecChhHHHHH----------HhhccCCeeeeeccccccccCCCCC
Q 002307 204 ---GYRDFIVDLKD-----IPGNKKLQRTK--WAMRLDDNEAQAL----------LDEYTGPQYEIEKHMTSWVGKLPEY 263 (938)
Q Consensus 204 ---~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (938)
.|-.-||-|-- .--.-|--||| ..|...++|-.+. .+-|.-.+||.|++ +.-+-+-+..
T Consensus 356 ~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverY-reAil~Yqk~ 434 (790)
T KOG0056|consen 356 KFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERY-REAILKYQKQ 434 (790)
T ss_pred hHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHH-HHHHHHHHHH
Confidence 11111111100 00001112222 2577777765542 34567788887764 3222222111
Q ss_pred Ccccchh-----hhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccccccchhhhhhhhhhHhhh
Q 002307 264 PHPVASS-----ISSRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENI 338 (938)
Q Consensus 264 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 338 (938)
--++..| +.--.++.+|+.+.++.++..++-|++..+-|+..+....+.+-++. |.|...+.+++-
T Consensus 435 E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN---------~FGT~YR~iQ~n 505 (790)
T KOG0056|consen 435 EWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLN---------FFGTYYRSIQKN 505 (790)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchH---------HHHHHHHHHHHh
Confidence 1111111 22345678888888888888888899988888887777766655442 223332222211
Q ss_pred H---HHHHHhhcCCCccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccccccc
Q 002307 339 S---DYIVDLSGEGGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEAR 415 (938)
Q Consensus 339 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 415 (938)
. |++-|.+.+...... .+.+...
T Consensus 506 fiDmEnmfdllkee~eVvd------------------------------------------------------~P~a~pl 531 (790)
T KOG0056|consen 506 FIDMENMFDLLKEEPEVVD------------------------------------------------------LPGAPPL 531 (790)
T ss_pred hhhHHHHHHHhhcCchhhc------------------------------------------------------CCCCCCc
Confidence 0 222222222111110 0111112
Q ss_pred ccCCCCcccCccc-CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 416 VDGSTGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 416 ~~~~~~v~F~dVv-G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.....++.|++|- +++.-|..|+++ .+-+.+++.+-|+||+|.||+++.|.+-+
T Consensus 532 ~~~~G~i~fsnvtF~Y~p~k~vl~di-----------sF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYDPGKPVLSDI-----------SFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred cccCCeEEEEEeEEecCCCCceeecc-----------eEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 2233456677765 667666666554 44567888999999999999999999987
No 287
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.71 E-value=0.00013 Score=77.84 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.|.-+||||+||+|||++|+.+++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 356799999999999999999973
No 288
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.58 E-value=0.0005 Score=72.75 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=32.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
|+..+.-++|+||||+|||+++..+|.+. +.+++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666779999999999999999998744 7788888876
No 289
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0012 Score=73.38 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=92.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCE-------EEE-eC--------chhHHHH-hh--hhhHHHHHHHHHHHh-
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------YQM-AG--------SEFVEVL-VG--VGSARIRDLFKRAKV- 515 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pf-------i~v-s~--------sel~~~~-vG--~~~~~vr~lF~~Ar~- 515 (938)
+.++..||+|| +||+.+|+++|..+-+.- -.+ +| +++.... .| .+...+|++...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56778999996 689999999998663211 000 00 1110000 01 134567777665543
Q ss_pred ---CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCC
Q 002307 516 ---NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPG 592 (938)
Q Consensus 516 ---~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpG 592 (938)
....|++||++|.+.. ..-|.||..++ +++.++++|..|+.++.+-|.+++
T Consensus 100 p~~~~~kV~II~~ad~m~~----------------------~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S-- 153 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV----------------------NAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS-- 153 (290)
T ss_pred cccCCcEEEEeehhhhcCH----------------------HHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--
Confidence 2235999999999742 34678888887 456677888888889999999998
Q ss_pred ccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHH
Q 002307 593 RFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 593 RFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv 646 (938)
|. ..|.|+. +.+...+++. ..++.. +...++....| ++.....+.
T Consensus 154 Rc-q~i~f~~-~~~~~~~~L~----~~g~~~--~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 154 RT-QIFHFPK-NEAYLIQLLE----QKGLLK--TQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred cc-eeeeCCC-cHHHHHHHHH----HcCCCh--HHHHHHHHHCC-CHHHHHHHh
Confidence 74 5777855 4554445543 222221 22334444445 555554444
No 290
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00025 Score=78.71 Aligned_cols=121 Identities=18% Similarity=0.204 Sum_probs=79.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeC--------chhHHHH-hh----hhhHHHHHHHHHHHhC----CC
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG--------SEFVEVL-VG----VGSARIRDLFKRAKVN----KP 518 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~--------sel~~~~-vG----~~~~~vr~lF~~Ar~~----~P 518 (938)
+.++..||+||+|+||+.+|.++|..+-+.--.-+| +++.... .+ .+...+|++.+.+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 567889999999999999999999976432100011 0100000 01 1344566666554322 23
Q ss_pred eEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEE
Q 002307 519 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKI 598 (938)
Q Consensus 519 ~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I 598 (938)
.|++||++|.+.. ..-|.||..++ +++.++++|..|+.++.+.|.+++ |. ..+
T Consensus 97 kv~ii~~ad~mt~----------------------~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~ 149 (290)
T PRK05917 97 KIYIIHEADRMTL----------------------DAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RS-LSI 149 (290)
T ss_pred eEEEEechhhcCH----------------------HHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cc-eEE
Confidence 5999999999742 34567777777 466778888888889999999998 74 466
Q ss_pred eccCC
Q 002307 599 RIRAP 603 (938)
Q Consensus 599 ~V~lP 603 (938)
.|+++
T Consensus 150 ~~~~~ 154 (290)
T PRK05917 150 HIPME 154 (290)
T ss_pred Eccch
Confidence 66554
No 291
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.55 E-value=0.00025 Score=81.33 Aligned_cols=78 Identities=26% Similarity=0.512 Sum_probs=56.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH------hhh--------hhHHHHHHHHHHHhC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL------VGV--------GSARIRDLFKRAKVN 516 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~------vG~--------~~~~vr~lF~~Ar~~ 516 (938)
|+.+..-++|+|+||+|||+|+..+|... +.+++++++.+-.... .|. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56667779999999999999999998764 4678888775533321 111 122345666666777
Q ss_pred CCeEEEEcCcchhhh
Q 002307 517 KPSVIFIDEIDALAT 531 (938)
Q Consensus 517 ~P~ILfIDEIDaL~~ 531 (938)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999999864
No 292
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0004 Score=82.24 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=25.9
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.+++.+-+-|+|++|+|||+|+.++++.+
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 3445677779999999999999999999843
No 293
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.54 E-value=0.00025 Score=83.74 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=41.3
Q ss_pred ccCcHHHHHHHHHHHHH--hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 427 VAGIDEAVEELQELVRY--LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 427 VvG~deak~eL~eiV~~--Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
|.|++.+|..+.-.+-. -+++.- .-.++..-++||+|.|||||+.+.|.++.-+...++..
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 66888877766443322 233321 11234445799999999999999999999887776653
No 294
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.53 E-value=0.0003 Score=82.61 Aligned_cols=78 Identities=24% Similarity=0.483 Sum_probs=57.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHh------hh--------hhHHHHHHHHHHHhC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV--------GSARIRDLFKRAKVN 516 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~v------G~--------~~~~vr~lF~~Ar~~ 516 (938)
|+.+..-++|+|+||+|||+|+..+|... +.++++++..+...... |. .+..+..+++..+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56667779999999999999999998765 67888888766444321 11 112345666666777
Q ss_pred CCeEEEEcCcchhhh
Q 002307 517 KPSVIFIDEIDALAT 531 (938)
Q Consensus 517 ~P~ILfIDEIDaL~~ 531 (938)
.|.+|+||+|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 899999999998864
No 295
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.53 E-value=0.00016 Score=86.58 Aligned_cols=108 Identities=30% Similarity=0.461 Sum_probs=68.4
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCC----EEEE------------------------eCchhHH
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVP----FYQM------------------------AGSEFVE 496 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------g~p----fi~v------------------------s~sel~~ 496 (938)
.+.++++..+||.||+|||||+|.||||+-- ..| .+.+ +..++..
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence 3456777889999999999999999999821 222 1111 1111111
Q ss_pred HH--------h------------hhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHH
Q 002307 497 VL--------V------------GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 556 (938)
Q Consensus 497 ~~--------v------------G~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~L 556 (938)
.. . =.+.++.|-.|++..-++|.++||||.-.- .+++.+..+
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA------------------LDe~~e~~l 554 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA------------------LDEETEDRL 554 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc------------------cChHHHHHH
Confidence 10 0 013345677888888999999999998552 445556666
Q ss_pred HHHHHHhcCCcCCCeEEEEEecCCCC
Q 002307 557 NQLLIELDGFDTGKGVIFLAATNRRD 582 (938)
Q Consensus 557 nqLL~eLDg~~~~~~ViVIAATN~pd 582 (938)
.+++++. -.++.||..++++.
T Consensus 555 ~q~l~~~-----lp~~tvISV~Hr~t 575 (604)
T COG4178 555 YQLLKEE-----LPDATVISVGHRPT 575 (604)
T ss_pred HHHHHhh-----CCCCEEEEeccchh
Confidence 6666541 24567776666644
No 296
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.52 E-value=0.00018 Score=67.88 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHhcC
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg 483 (938)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988663
No 297
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.51 E-value=0.00039 Score=71.10 Aligned_cols=27 Identities=30% Similarity=0.695 Sum_probs=23.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+.++..++|+||+|||||+|.|++|.
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHh
Confidence 455666799999999999999999998
No 298
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.51 E-value=0.00046 Score=75.47 Aligned_cols=79 Identities=23% Similarity=0.420 Sum_probs=51.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH------hcCCCEEEEeCchhHHHH-hhhhhHHHHHHHHHH--------HhCCC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG------EAGVPFYQMAGSEFVEVL-VGVGSARIRDLFKRA--------KVNKP 518 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~------elg~pfi~vs~sel~~~~-vG~~~~~vr~lF~~A--------r~~~P 518 (938)
.++....+||.||.|.||+.||+.|-. ....+|+.++|..+...- +..--..++..|.-| +....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 345566799999999999999999854 457899999997654310 000001122223222 22345
Q ss_pred eEEEEcCcchhhhh
Q 002307 519 SVIFIDEIDALATR 532 (938)
Q Consensus 519 ~ILfIDEIDaL~~~ 532 (938)
.+||+|||..++.+
T Consensus 284 gmlfldeigelgad 297 (531)
T COG4650 284 GMLFLDEIGELGAD 297 (531)
T ss_pred ceEehHhhhhcCcc
Confidence 69999999998754
No 299
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0033 Score=70.27 Aligned_cols=125 Identities=15% Similarity=0.228 Sum_probs=84.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCC-----------C--EEEEe--CchhHHHHhhhhhHHHHHHHHHHHh-----
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------P--FYQMA--GSEFVEVLVGVGSARIRDLFKRAKV----- 515 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~-----------p--fi~vs--~sel~~~~vG~~~~~vr~lF~~Ar~----- 515 (938)
+.++..||+|+.|.||+.+|+++++.+-+ | +..++ +.. .+...++.+.+....
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCccc
Confidence 34567899999999999999999998622 2 22232 111 122346665555421
Q ss_pred CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccc
Q 002307 516 NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFD 595 (938)
Q Consensus 516 ~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFd 595 (938)
....|++||++|.+.. ...|.||..++. ++..+++|..|+.++.+-+.+++ | +
T Consensus 89 ~~~KvvII~~~e~m~~----------------------~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--R-c 141 (299)
T PRK07132 89 SQKKILIIKNIEKTSN----------------------SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--R-C 141 (299)
T ss_pred CCceEEEEecccccCH----------------------HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--C-e
Confidence 2456999999987632 235677777773 55666666667678888888887 6 4
Q ss_pred eEEeccCCChhhHHHHHHH
Q 002307 596 RKIRIRAPNAKGRTEILKI 614 (938)
Q Consensus 596 r~I~V~lPd~eeR~eILr~ 614 (938)
..+.+.+|+.++..+.|..
T Consensus 142 ~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 142 QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EEEECCCCCHHHHHHHHHH
Confidence 6889999988877766654
No 300
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.00094 Score=72.95 Aligned_cols=121 Identities=13% Similarity=0.060 Sum_probs=79.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH-----HH-------H-----hhhhhHHHHHHHHHHHh---
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV-----EV-------L-----VGVGSARIRDLFKRAKV--- 515 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~-----~~-------~-----vG~~~~~vr~lF~~Ar~--- 515 (938)
.+|+..|++||+|+||..+|.++|...-+.--.-.|.... .. + ...+...+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4678999999999999999999998653210000111100 00 0 01234456665554322
Q ss_pred --CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCc
Q 002307 516 --NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGR 593 (938)
Q Consensus 516 --~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGR 593 (938)
....|++||++|.+. ....|.||..++ +++.++++|..|+.++.+.|.+++ |
T Consensus 85 e~~~~KV~II~~ae~m~----------------------~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--R 138 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN----------------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--R 138 (261)
T ss_pred hcCCCEEEEeccHhhhC----------------------HHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--h
Confidence 224699999999874 234678888887 567788888889999999999998 7
Q ss_pred cceEEeccCC
Q 002307 594 FDRKIRIRAP 603 (938)
Q Consensus 594 Fdr~I~V~lP 603 (938)
. ..+.++.+
T Consensus 139 C-q~~~~~~~ 147 (261)
T PRK05818 139 C-VQYVVLSK 147 (261)
T ss_pred e-eeeecCCh
Confidence 5 34566555
No 301
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.48 E-value=0.00063 Score=76.55 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=68.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH----hhh------------hhHHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----VGV------------GSARIRDLFKRAK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~----vG~------------~~~~vr~lF~~Ar 514 (938)
|++..+.++|+||||||||+||-.++.++ +.++++++..+..+.. .|. .+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56667779999999999999988876544 6777777765433210 111 1222222333345
Q ss_pred hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEec
Q 002307 515 VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 578 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAAT 578 (938)
...+++|+||-+.++.++..-. +...+. ......+.+.++|..|.+.-...++.+|.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e-~~~g~~----~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIE-GEMGDS----HVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred ccCCcEEEEcchhhhccchhhc-cccccc----chhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5678999999999987642110 000000 0111223445555555554455666776553
No 302
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.48 E-value=0.00075 Score=72.46 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=48.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH----Hh--hh-----------------------
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV----LV--GV----------------------- 501 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~----~v--G~----------------------- 501 (938)
|++...-++|.||||||||+++..++... +.+.++++..+-... .. |.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 45666779999999999999976554433 567777765432211 10 00
Q ss_pred --hhHHHHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 502 --GSARIRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 502 --~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
....+..+...+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223344455555678899999998864
No 303
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.45 E-value=0.00086 Score=70.57 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
|+..+.-++|+|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56666679999999999999999998765 5677777654
No 304
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.44 E-value=0.0017 Score=75.25 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCchhHHHHhhhhhHHH
Q 002307 431 DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGVGSARI 506 (938)
Q Consensus 431 deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sel~~~~vG~~~~~v 506 (938)
......|...+.++.+ ..++++.||+|||||+++.+++... | -.++.+.++.....
T Consensus 193 r~k~~~L~rl~~fve~-----------~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------ 252 (449)
T TIGR02688 193 RQKLLLLARLLPLVEP-----------NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------ 252 (449)
T ss_pred HHHHHHHHhhHHHHhc-----------CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH------
Confidence 4445556666666543 3489999999999999999997762 4 23344444433221
Q ss_pred HHHHHHHHhCCCeEEEEcCcchhh
Q 002307 507 RDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 507 r~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
..+. .-....+|+|||+..+.
T Consensus 253 -~~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 253 -RQIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred -HHHh--hhccCCEEEEEcCCCCc
Confidence 1122 12345699999998865
No 305
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.017 Score=67.19 Aligned_cols=123 Identities=16% Similarity=0.164 Sum_probs=73.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKD 539 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~ 539 (938)
-++|+||.+||||++++.+.....-.+++++-.+........ ......+..+.....+.+|||||+.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999999888875556666555543322221 111222222222244699999998753
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHH
Q 002307 540 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTE 610 (938)
Q Consensus 540 ~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~e 610 (938)
++...+..+.... . ..+++.+++........+-.=+|| ...+.+.+.+..+...
T Consensus 108 -----------~W~~~lk~l~d~~---~--~~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 -----------DWERALKYLYDRG---N--LDVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLK 161 (398)
T ss_pred -----------hHHHHHHHHHccc---c--ceEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHh
Confidence 2455556554321 1 145555444433333333333578 5677888888888765
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.43 E-value=0.00082 Score=71.70 Aligned_cols=40 Identities=30% Similarity=0.529 Sum_probs=32.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se 493 (938)
|++.+..++++|+||||||+|+.+++.+. +.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 67777889999999999999999997543 67777776544
No 307
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.43 E-value=0.0003 Score=89.34 Aligned_cols=138 Identities=31% Similarity=0.400 Sum_probs=91.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH--Hhhh-------hhHHHHH-HHHHHHhCCCeEEEEcCc
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGV-------GSARIRD-LFKRAKVNKPSVIFIDEI 526 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~--~vG~-------~~~~vr~-lF~~Ar~~~P~ILfIDEI 526 (938)
..+++||.|.||+|||+|..|+|+..|-.++.++.++-.+- ++|. ++-+.++ -|-.|.+ ....|+|||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehh
Confidence 35689999999999999999999999999999998764331 2222 2222332 2333433 3458999999
Q ss_pred chhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHH--------Hhc-CCcCCCeEEEEEecCCCC------cCCccccCC
Q 002307 527 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLI--------ELD-GFDTGKGVIFLAATNRRD------LLDPALLRP 591 (938)
Q Consensus 527 DaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~--------eLD-g~~~~~~ViVIAATN~pd------~LDpALlRp 591 (938)
.-.. +..-.-+|..|. ++| .+....+..|+||-|.-+ .||..++.
T Consensus 1621 NLaS-------------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n- 1680 (4600)
T COG5271 1621 NLAS-------------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN- 1680 (4600)
T ss_pred hhhH-------------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh-
Confidence 7532 112222343333 232 234456789999988643 68888888
Q ss_pred CccceEEeccCCChhhHHHHHHHHhc
Q 002307 592 GRFDRKIRIRAPNAKGRTEILKIHAS 617 (938)
Q Consensus 592 GRFdr~I~V~lPd~eeR~eILr~~l~ 617 (938)
||- +++++....++...|..+...
T Consensus 1681 -RFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1681 -RFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred -hhh-eEEecccccchHHHHHHhhCC
Confidence 886 677887777777777766554
No 308
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.42 E-value=0.00019 Score=72.58 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=66.1
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCchh--------HHHHhh-----hhhHHHHHHHHHHHhCC
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF--------VEVLVG-----VGSARIRDLFKRAKVNK 517 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sel--------~~~~vG-----~~~~~vr~lF~~Ar~~~ 517 (938)
+.+.++..+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++ .+..+.+-.+..|....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 34566777999999999999999999986521 1122222111 111011 12345666788888889
Q ss_pred CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCc
Q 002307 518 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL 583 (938)
Q Consensus 518 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~ 583 (938)
|.++++||-..- .+......+.+++.++. . .+..+|.+|+..+.
T Consensus 101 p~illlDEP~~~------------------LD~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~ 144 (163)
T cd03216 101 ARLLILDEPTAA------------------LTPAEVERLFKVIRRLR---A-QGVAVIFISHRLDE 144 (163)
T ss_pred CCEEEEECCCcC------------------CCHHHHHHHHHHHHHHH---H-CCCEEEEEeCCHHH
Confidence 999999997541 33444555666666652 1 23445556665543
No 309
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.41 E-value=0.0006 Score=71.60 Aligned_cols=74 Identities=23% Similarity=0.413 Sum_probs=45.3
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh-----cCCCEE-------------EEeCchhHHH---HhhhhhHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE-----AGVPFY-------------QMAGSEFVEV---LVGVGSARIRDLFKRA 513 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e-----lg~pfi-------------~vs~sel~~~---~vG~~~~~vr~lF~~A 513 (938)
+...+-++|+||+|+|||+|+|.++.. .|.++- ..+..+-... .......++..+++.+
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~ 101 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKA 101 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhc
Confidence 344567899999999999999999863 344321 1111110000 0011124566777766
Q ss_pred HhCCCeEEEEcCcch
Q 002307 514 KVNKPSVIFIDEIDA 528 (938)
Q Consensus 514 r~~~P~ILfIDEIDa 528 (938)
....|.+|++||.-+
T Consensus 102 ~~~~p~llllDEp~~ 116 (199)
T cd03283 102 KKGEPVLFLLDEIFK 116 (199)
T ss_pred cCCCCeEEEEecccC
Confidence 656899999999744
No 310
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.41 E-value=0.0013 Score=87.27 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=27.4
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
.+.++++..+.|+||+|||||++++.|.+-..
T Consensus 1188 sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1188 TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 44567788899999999999999999988554
No 311
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0014 Score=75.25 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecccccccchhhhhhhhhhHhhhHHHHHHhhcCCCcc
Q 002307 273 SRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSGEGGIL 352 (938)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (938)
-.+++..+...++..++.-+..|.|..+.++.....+++..-+ . .|+|+..+.+....-+++..+
T Consensus 173 Q~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~P-------l--nflg~~Yrei~q~ltdme~mf------ 237 (497)
T COG5265 173 QTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIP-------L--NFLGFSYREIRQALTDMEKMF------ 237 (497)
T ss_pred hHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhh-------h--hhhHHHHHHHHHhhhhHHHHH------
Confidence 4567788888888999999999999999998888877765433 2 256666555443222222211
Q ss_pred ccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccccccccccc-cCCCCcccCccc-Cc
Q 002307 353 SKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARV-DGSTGVKFSDVA-GI 430 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~F~dVv-G~ 430 (938)
+. ..... ...+. ..++... -....+.|.+|. ++
T Consensus 238 dL-----------------------------------l~~~~---------~v~d~-pda~~L~~~~~g~v~F~~V~F~y 272 (497)
T COG5265 238 DL-----------------------------------LDVEA---------EVSDA-PDAPPLWPVRLGAVAFINVSFAY 272 (497)
T ss_pred Hh-----------------------------------hccch---------hhccC-CCCccccccccceEEEEEEEeec
Confidence 00 00000 00000 0000000 122345677765 55
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 431 DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 431 deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+..+.-|..+ .+.+.+++.+-++||+|+||+++.+.+-+-.
T Consensus 273 ~~~r~iL~~i-----------sf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 273 DPRRPILNGI-----------SFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred cccchhhcCc-----------cccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 5544444332 3346677789999999999999999998843
No 312
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.38 E-value=0.00061 Score=68.20 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
.++..|+|+|+||||||++|+++|..++.+++.. ..+...
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~ 41 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEA 41 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHH
Confidence 3466899999999999999999999999998854 444443
No 313
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.38 E-value=0.00038 Score=76.60 Aligned_cols=68 Identities=28% Similarity=0.457 Sum_probs=43.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCC----------CEEEEe-CchhHHHHhhh-------------hhHHHHHHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGV----------PFYQMA-GSEFVEVLVGV-------------GSARIRDLFKRAK 514 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~----------pfi~vs-~sel~~~~vG~-------------~~~~vr~lF~~Ar 514 (938)
.+++|.||+|+|||+|.+++++...- ++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999997632 222221 12222111111 1122335666677
Q ss_pred hCCCeEEEEcCc
Q 002307 515 VNKPSVIFIDEI 526 (938)
Q Consensus 515 ~~~P~ILfIDEI 526 (938)
...|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 314
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.33 E-value=0.00074 Score=76.10 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=52.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH-H---hhh------------hhHHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-L---VGV------------GSARIRDLFKRAK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~-~---vG~------------~~~~vr~lF~~Ar 514 (938)
|++..+-+.++||||||||+||-.++.++ +.+.++++..+-.+. + .|. .+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 46666779999999999999999887544 677888876442221 0 111 1112222222345
Q ss_pred hCCCeEEEEcCcchhhhh
Q 002307 515 VNKPSVIFIDEIDALATR 532 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~~ 532 (938)
...+++|+||-+.++.++
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999998753
No 315
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.31 E-value=0.00019 Score=67.98 Aligned_cols=30 Identities=40% Similarity=0.847 Sum_probs=27.0
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
|+|.||||+|||++|+.||..++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877553
No 316
>PHA00729 NTP-binding motif containing protein
Probab=97.30 E-value=0.00035 Score=74.90 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=22.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg 483 (938)
+++|+|+||||||+||.++|.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 317
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0023 Score=75.32 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=24.9
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+.++++..|-|.|++|||||++++.+++
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 34456677899999999999999999997
No 318
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.28 E-value=0.0022 Score=69.93 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGV 484 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~ 484 (938)
.+.-++|.||+|+|||+|++.+++....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4456999999999999999999997754
No 319
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.25 E-value=0.0012 Score=65.62 Aligned_cols=73 Identities=26% Similarity=0.443 Sum_probs=46.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--EEEEeCc---hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGS---EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg~p--fi~vs~s---el~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
.+.++..+.|.||+|+|||+|++++++..... -+.+++. .+...+. +..+.+-.+..|....|.++++||-..
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 45666779999999999999999999965210 0111110 0000011 123455567777788999999999764
No 320
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.23 E-value=0.0019 Score=75.27 Aligned_cols=164 Identities=23% Similarity=0.316 Sum_probs=83.7
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHH
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSAR 505 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~ 505 (938)
.|.|.+++|+.+.=++--=....+=+.+..+..-+|||.|.|||.|+.|.|-+-.-+-+-++. ++.. +...|.++..
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTASV 408 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTASV 408 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceeeE
Confidence 377888888877443321111111112334445579999999999999999887655443332 2210 0001111111
Q ss_pred HHHHHH-----H--H-HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH-HHHHHHHHHHHhcCCc--CCCeEEE
Q 002307 506 IRDLFK-----R--A-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE-RETTLNQLLIELDGFD--TGKGVIF 574 (938)
Q Consensus 506 vr~lF~-----~--A-r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e-~~~~LnqLL~eLDg~~--~~~~ViV 574 (938)
+|+--. + | -.....|++|||+|.+-.... . +.++. -++++.- .-.|+. -+++.-|
T Consensus 409 ~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR---------V--AIHEAMEQQTISI---AKAGITT~LNSRtSV 474 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR---------V--AIHEAMEQQTISI---AKAGITTTLNSRTSV 474 (729)
T ss_pred EecCCcceEEEecceEEEecCCEEEeehhhccCchhh---------h--HHHHHHHhhhHHH---hhhcceeeecchhhh
Confidence 111100 0 0 012345999999999743210 0 01111 1222221 112222 2456778
Q ss_pred EEecCCCC-----------c--CCccccCCCccceEEeccCCChhhH
Q 002307 575 LAATNRRD-----------L--LDPALLRPGRFDRKIRIRAPNAKGR 608 (938)
Q Consensus 575 IAATN~pd-----------~--LDpALlRpGRFdr~I~V~lPd~eeR 608 (938)
+||+|.+- . +-+.+++ |||.++-+.--..++|
T Consensus 475 LAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~ 519 (729)
T KOG0481|consen 475 LAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEER 519 (729)
T ss_pred hhhcCCccccccccCCcccccchhhhHhh--hccEEEEEeccCcchh
Confidence 89998632 2 3367888 9998887765433333
No 321
>PRK08118 topology modulation protein; Reviewed
Probab=97.22 E-value=0.00044 Score=70.63 Aligned_cols=32 Identities=22% Similarity=0.528 Sum_probs=29.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 491 (938)
-|+++||||+|||++|+.|++.++.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999988764
No 322
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.20 E-value=0.0012 Score=75.93 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=44.9
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCC-----CEEEEeCchh-------HHHHhh---------hhhHHHH---HHHHHHH--
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGV-----PFYQMAGSEF-------VEVLVG---------VGSARIR---DLFKRAK-- 514 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~-----pfi~vs~sel-------~~~~vG---------~~~~~vr---~lF~~Ar-- 514 (938)
.+|+||||+|||+|++.|++.... ..+.+-..+. .....| ....+++ ..++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999986633 3232222222 111111 1122233 3344443
Q ss_pred --hCCCeEEEEcCcchhhhhhc
Q 002307 515 --VNKPSVIFIDEIDALATRRQ 534 (938)
Q Consensus 515 --~~~P~ILfIDEIDaL~~~r~ 534 (938)
.....+||||||+.+.....
T Consensus 252 ~e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHHH
Confidence 23567999999999987643
No 323
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.00088 Score=76.85 Aligned_cols=111 Identities=22% Similarity=0.375 Sum_probs=62.7
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc----C-CCEEEEeCchhH-------HH---Hhhhh------hHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA----G-VPFYQMAGSEFV-------EV---LVGVG------SARIRDLFKRA 513 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el----g-~pfi~vs~sel~-------~~---~vG~~------~~~vr~lF~~A 513 (938)
+..+..++|+||+|+|||+++..||..+ | ..+..+.+..+. .. ..|.. ...+...+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-- 211 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-- 211 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--
Confidence 4456679999999999999999999764 3 344444444331 11 11211 111222232
Q ss_pred HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-CCeEEEEEecCCCCcCCccc
Q 002307 514 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNRRDLLDPAL 588 (938)
Q Consensus 514 r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-~~~ViVIAATN~pd~LDpAL 588 (938)
+....++|+||....... + ..+.+.+..+.+... ...++|+.+|+..+.++..+
T Consensus 212 ~l~~~DlVLIDTaG~~~~-----------------d----~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQR-----------------D----RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred HhcCCCEEEEcCCCCCcc-----------------c----HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 234557999999854211 1 123344444443332 35688888888777665443
No 324
>PF14516 AAA_35: AAA-like domain
Probab=97.18 E-value=0.016 Score=65.49 Aligned_cols=176 Identities=15% Similarity=0.151 Sum_probs=93.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH-------HHhhh------------------------h
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-------VLVGV------------------------G 502 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~-------~~vG~------------------------~ 502 (938)
++.-+.|.||..+|||++...+.+.+ +...+++++..+.. .+... .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 35578999999999999999987655 67777777654211 00000 1
Q ss_pred hHHHHHHHHHH---HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeE-EEEEec
Q 002307 503 SARIRDLFKRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV-IFLAAT 578 (938)
Q Consensus 503 ~~~vr~lF~~A---r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~V-iVIAAT 578 (938)
.......|+.. ....|-||+|||||.+..... ...+.-..+..+...-.....-..+ ++++.+
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-------------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~ 176 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-------------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGS 176 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-------------hHHHHHHHHHHHHHhcccCcccceEEEEEecC
Confidence 11233334432 235788999999999864311 1111222222222211111111222 333333
Q ss_pred CCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHH
Q 002307 579 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEA 649 (938)
Q Consensus 579 N~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA 649 (938)
..+......-.+|-.+...|.++.-+.++-..+++.+-.. .... .++.+-..+.| -|-=+..+|...
T Consensus 177 t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgG-hP~Lv~~~~~~l 243 (331)
T PF14516_consen 177 TEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGG-HPYLVQKACYLL 243 (331)
T ss_pred cccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCC-CHHHHHHHHHHH
Confidence 2222222222455455667777777888888888776433 2222 27777777877 455444444443
No 325
>PRK05973 replicative DNA helicase; Provisional
Probab=97.18 E-value=0.0054 Score=66.42 Aligned_cols=39 Identities=38% Similarity=0.414 Sum_probs=31.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
|+.++.-++|.|+||+|||+++-.++.+. |.++++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 56677779999999999999999887654 7777777654
No 326
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.17 E-value=0.00033 Score=72.98 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=58.9
Q ss_pred EEEEcCCCchHHHHHHHH-HHh---cCCCEEEEeCchhHH-HHhh---hhhH-------------HHHHHHHHHHhCCCe
Q 002307 461 VLLEGPPGCGKTLVAKAI-AGE---AGVPFYQMAGSEFVE-VLVG---VGSA-------------RIRDLFKRAKVNKPS 519 (938)
Q Consensus 461 VLL~GPPGTGKT~LArAL-A~e---lg~pfi~vs~sel~~-~~vG---~~~~-------------~vr~lF~~Ar~~~P~ 519 (938)
.+++|.||+|||+.|-.. ... .|.+++. +...+.- .... .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999988665 433 3777665 4432221 1000 0000 001111111112567
Q ss_pred EEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEe
Q 002307 520 VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIR 599 (938)
Q Consensus 520 ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~ 599 (938)
+|+|||++.+.+.+... .......+ +++.. ....++-|+.+|..+..+|+.+++ +.+.++.
T Consensus 82 liviDEa~~~~~~r~~~------------~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~ 142 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK------------GKKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYH 142 (193)
T ss_dssp EEEETTGGGTSB---T-------------T----HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEE
T ss_pred EEEEECChhhcCCCccc------------cccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEE
Confidence 99999999988776431 01112223 33332 234567777889999999999986 7777777
Q ss_pred ccCCC
Q 002307 600 IRAPN 604 (938)
Q Consensus 600 V~lPd 604 (938)
+..++
T Consensus 143 ~~k~~ 147 (193)
T PF05707_consen 143 CRKLD 147 (193)
T ss_dssp EEE--
T ss_pred EEeec
Confidence 76553
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=97.17 E-value=0.0029 Score=84.87 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.++++.-+.|+||+|+|||+|++++.++.
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~ 667 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGEL 667 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35566669999999999999999999976
No 328
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.17 E-value=0.0037 Score=67.13 Aligned_cols=40 Identities=35% Similarity=0.480 Sum_probs=32.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCCEEEEeCch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGSE 493 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~se 493 (938)
|+.++..+|++||||||||+++..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6777888999999999999999877554 377777776544
No 329
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.16 E-value=0.0015 Score=68.83 Aligned_cols=116 Identities=21% Similarity=0.169 Sum_probs=65.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---C------CCEEEEeCchhH--HHHh---h------------------h
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---G------VPFYQMAGSEFV--EVLV---G------------------V 501 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g------~pfi~vs~sel~--~~~v---G------------------~ 501 (938)
|+....-+.|+||||+|||+++..+|... + ..+++++..+-. ..+. . .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 56667779999999999999999998754 3 566777664311 1100 0 0
Q ss_pred hhHHHHHHHHHH----HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe
Q 002307 502 GSARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (938)
Q Consensus 502 ~~~~vr~lF~~A----r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA 577 (938)
....+...+... ....+++|+||-|..+........ + ...+..+.+.+++..|..+....++.||.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~-~--------~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 165 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR-G--------MLAERARLLSQALRKLLRLADKFNVAVVFT 165 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC-c--------hHHHHHHHHHHHHHHHHHHHHHhCcEEEEE
Confidence 111122222222 245778999999998864321100 0 012233445555555554444456666655
Q ss_pred c
Q 002307 578 T 578 (938)
Q Consensus 578 T 578 (938)
.
T Consensus 166 n 166 (226)
T cd01393 166 N 166 (226)
T ss_pred E
Confidence 4
No 330
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.16 E-value=0.002 Score=68.27 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=31.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 493 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~se 493 (938)
|++.+.-+.|+||||||||+++..++... +...++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 56667779999999999999999998553 25677777644
No 331
>PRK07261 topology modulation protein; Provisional
Probab=97.16 E-value=0.00065 Score=69.56 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=28.9
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs~s 492 (938)
|+|+|+||+|||+||+.|+...+.|++..+.-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 79999999999999999999999998877643
No 332
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.14 E-value=0.0016 Score=67.23 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=67.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCC-------------CEEEEeCchhHHHHhhh-------------hhHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------------PFYQMAGSEFVEVLVGV-------------GSARIR 507 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg~-------------pfi~vs~sel~~~~vG~-------------~~~~vr 507 (938)
.+.++.-+.|.||+|+|||+|.+++....|. ++.++.-.++...+ +. +..+.+
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~-~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDV-GLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHc-CCCccccCCCcCcCCHHHHHH
Confidence 3455666899999999999999999753322 12222111122111 10 123455
Q ss_pred HHHHHHHhCC--CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCC
Q 002307 508 DLFKRAKVNK--PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLD 585 (938)
Q Consensus 508 ~lF~~Ar~~~--P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LD 585 (938)
-.+..|.... |.++++||-..- .+......+.+++..+. . .+..||.+|+.++.+
T Consensus 96 l~laral~~~~~p~llLlDEPt~~------------------LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~- 152 (176)
T cd03238 96 VKLASELFSEPPGTLFILDEPSTG------------------LHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL- 152 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeCCccc------------------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-
Confidence 6677777778 999999997552 33333444555555542 1 234555567765432
Q ss_pred ccccCCCccceEEeccC
Q 002307 586 PALLRPGRFDRKIRIRA 602 (938)
Q Consensus 586 pALlRpGRFdr~I~V~l 602 (938)
+ ..|+.+.+..
T Consensus 153 ----~--~~d~i~~l~~ 163 (176)
T cd03238 153 ----S--SADWIIDFGP 163 (176)
T ss_pred ----H--hCCEEEEECC
Confidence 2 3566666543
No 333
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.14 E-value=0.0014 Score=68.56 Aligned_cols=67 Identities=28% Similarity=0.455 Sum_probs=43.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCC----CEEEEeCc-hhHH---------HHhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGV----PFYQMAGS-EFVE---------VLVGVGSARIRDLFKRAKVNKPSVIFIDE 525 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~----pfi~vs~s-el~~---------~~vG~~~~~vr~lF~~Ar~~~P~ILfIDE 525 (938)
-+++.||+|+|||++++++++.... .++.+..+ ++.. .-+|.......+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887642 22222211 1110 01122223355667777778899999999
Q ss_pred c
Q 002307 526 I 526 (938)
Q Consensus 526 I 526 (938)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 334
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.13 E-value=0.0015 Score=67.48 Aligned_cols=74 Identities=23% Similarity=0.218 Sum_probs=46.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCch---hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcch
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSE---FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~se---l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
+.++.-+.|.||+|+|||+|++.+++.... --+.+++.. ......=.+..+.+-.+..|....|.++++||-..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 345567899999999999999999986421 011122110 00000011233556667777788999999999754
No 335
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.13 E-value=0.0021 Score=65.72 Aligned_cols=109 Identities=18% Similarity=0.239 Sum_probs=64.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCchhH--------------------H-----HHhh--hhh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFV--------------------E-----VLVG--VGS 503 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sel~--------------------~-----~~vG--~~~ 503 (938)
+.+.++..+.|.||+|+|||+|++++++.... --+.+++.... . .... .+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 34566677999999999999999999986421 11222221110 0 0000 012
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCc
Q 002307 504 ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL 583 (938)
Q Consensus 504 ~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~ 583 (938)
.+.+-.+..|-...|.++++||-..- .+......+.+++.++. . +..+|.+|+.++.
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~------------------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~ 159 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVG------------------LDPITERQLLSLIFEVL---K--DKTLIWITHHLTG 159 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccc------------------CCHHHHHHHHHHHHHHc---C--CCEEEEEecCHHH
Confidence 44556677778889999999997652 33334455666666652 2 2344556666554
Q ss_pred C
Q 002307 584 L 584 (938)
Q Consensus 584 L 584 (938)
+
T Consensus 160 ~ 160 (178)
T cd03247 160 I 160 (178)
T ss_pred H
Confidence 3
No 336
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.0021 Score=65.50 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.-++++|+||+|||+++.-+++.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4468999999999999999999866
No 337
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.12 E-value=0.0015 Score=78.51 Aligned_cols=29 Identities=31% Similarity=0.427 Sum_probs=25.2
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++++..+.|.||+|+|||+|++.+++.
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567778999999999999999999984
No 338
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.11 E-value=0.0016 Score=76.67 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=55.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHh------hh--------hhHHHHHHHHHHHhC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV--------GSARIRDLFKRAKVN 516 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~v------G~--------~~~~vr~lF~~Ar~~ 516 (938)
|+.++.-++|.|+||+|||+|+..++... +.++++++..+-..... |. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56667779999999999999999997754 46788888755433211 11 112344556666677
Q ss_pred CCeEEEEcCcchhhh
Q 002307 517 KPSVIFIDEIDALAT 531 (938)
Q Consensus 517 ~P~ILfIDEIDaL~~ 531 (938)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998753
No 339
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.11 E-value=0.0014 Score=63.64 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=29.5
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~v 499 (938)
|+++||||+|||++|+.++...+ ...++...+.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 68999999999999999999999 44456566555443
No 340
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.10 E-value=0.017 Score=64.16 Aligned_cols=95 Identities=24% Similarity=0.303 Sum_probs=59.2
Q ss_pred ccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC-----CCEEE--E---eC--ch
Q 002307 427 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQ--M---AG--SE 493 (938)
Q Consensus 427 VvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg-----~pfi~--v---s~--se 493 (938)
|.|+.-+++.+-..+.. +.++.- +.|--+=|+|+|||||.+.++.||+..- -+++. + ++ ..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 77998888887776664 555531 2344566899999999999999999762 22211 0 11 11
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
-++.|..+-...++ ..+..++-+|.++||.|.+.
T Consensus 158 ~ie~Yk~eL~~~v~---~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 158 KIEDYKEELKNRVR---GTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHH---HHHHhcCCceEEechhhhcC
Confidence 12222222223333 34445667799999999974
No 341
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.0011 Score=67.30 Aligned_cols=109 Identities=23% Similarity=0.341 Sum_probs=64.0
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--EEEEeCchh---------------------HHHHh----hhhhHH
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSEF---------------------VEVLV----GVGSAR 505 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p--fi~vs~sel---------------------~~~~v----G~~~~~ 505 (938)
+.+.++.-+.|.||+|+|||+|.+++++..... -+.+++... ...-+ =.+..+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 345667779999999999999999999964210 011221111 00000 011233
Q ss_pred HHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcC
Q 002307 506 IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLL 584 (938)
Q Consensus 506 vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~L 584 (938)
.+-.+..|-...|.+|++||-.+- .+......+.+++.++. . +..+|.+|+.++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~g------------------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSA------------------LDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcC------------------CCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 455677777789999999996541 23333445556665552 2 24556677766554
No 342
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.09 E-value=0.003 Score=70.73 Aligned_cols=160 Identities=20% Similarity=0.332 Sum_probs=96.1
Q ss_pred cccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHH-HH--hcCCCEEEEeCchhHHH----
Q 002307 426 DVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAI-AG--EAGVPFYQMAGSEFVEV---- 497 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArAL-A~--elg~pfi~vs~sel~~~---- 497 (938)
.+.|..+..+.+.+++.+ .-.. ..+.+++.||.|+|||++.... +. +.|-.|+.+....+...
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 357888888888888776 2222 2457999999999999876544 33 66777766644322211
Q ss_pred -----------------HhhhhhHHHHHHHHHHHhC-----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHH
Q 002307 498 -----------------LVGVGSARIRDLFKRAKVN-----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (938)
Q Consensus 498 -----------------~vG~~~~~vr~lF~~Ar~~-----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~ 555 (938)
..|.....+..++...+.. .+.|.++||||.+.+.. ++..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------------rQtl 157 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------------RQTL 157 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------------hhHH
Confidence 1122233334444333221 23355568999876421 2333
Q ss_pred HHHHHHHhcCCcCCCeEEEEEecCCCCc---CCccccCCCccce-EEeccCC-ChhhHHHHHHHHh
Q 002307 556 LNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRFDR-KIRIRAP-NAKGRTEILKIHA 616 (938)
Q Consensus 556 LnqLL~eLDg~~~~~~ViVIAATN~pd~---LDpALlRpGRFdr-~I~V~lP-d~eeR~eILr~~l 616 (938)
+..++..-. ....++.||+.|.+.+. |.....+ ||.. +|++.++ +..+-.++++..+
T Consensus 158 lYnlfDisq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 158 LYNLFDISQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 444443322 23567999999988764 4556666 8864 4666543 5777788888776
No 343
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.0028 Score=67.30 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~ 480 (938)
+.++|+||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 344
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.003 Score=78.82 Aligned_cols=162 Identities=22% Similarity=0.320 Sum_probs=105.7
Q ss_pred cCcccCc-HHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeCc
Q 002307 424 FSDVAGI-DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGS 492 (938)
Q Consensus 424 F~dVvG~-deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~s 492 (938)
++-++|. ++..+.+.+++. .. -.++-+|+|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~deeirRvi~iL~---Rr---------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS---RK---------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHHHHHHHHh---cc---------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 4567776 555444444432 21 12467999999999999999999865 2345555554
Q ss_pred hhH--HHHhhhhhHHHHHHHHHHHh-CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCC
Q 002307 493 EFV--EVLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 569 (938)
Q Consensus 493 el~--~~~vG~~~~~vr~lF~~Ar~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~ 569 (938)
.+. .++.|..+.+++.+...+.. ...-||||||++-+...... . + .....|. |..+- .+
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--~---------~---~~d~~nl-Lkp~L---~r 314 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--Y---------G---AIDAANL-LKPLL---AR 314 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc--c---------h---HHHHHHh-hHHHH---hc
Confidence 333 24667788899999998874 45569999999998755322 0 0 1122222 22221 23
Q ss_pred CeEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcc
Q 002307 570 KGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 618 (938)
Q Consensus 570 ~~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~ 618 (938)
.++.+|+||...+ .-||++-| ||+ .+.++.|+.+.-..||+.....
T Consensus 315 g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 315 GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 4488998877422 45899999 998 4568889888877777766554
No 345
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.05 E-value=0.003 Score=66.94 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSE 493 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~se 493 (938)
|++.+..+|+.||||||||+|+..++.+. |-++++++..+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 66777889999999999999999876433 78888887643
No 346
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.00091 Score=72.80 Aligned_cols=60 Identities=27% Similarity=0.382 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCC
Q 002307 502 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 581 (938)
Q Consensus 502 ~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~p 581 (938)
+.+..|-++++|....|.+++|||--. ..+...+..+.++|.++. .. +..|+..|...
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~------------------gvD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL 199 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFT------------------GVDVAGQKEIYDLLKELR---QE-GKTVLMVTHDL 199 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcc------------------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCc
Confidence 345677789999999999999999533 133445566777777764 22 56666667755
Q ss_pred Cc
Q 002307 582 DL 583 (938)
Q Consensus 582 d~ 583 (938)
+.
T Consensus 200 ~~ 201 (254)
T COG1121 200 GL 201 (254)
T ss_pred HH
Confidence 43
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0015 Score=65.19 Aligned_cols=74 Identities=30% Similarity=0.450 Sum_probs=47.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCC--EEEEeCchhHH-------HHhh-----hhhHHHHHHHHHHHhCCCeE
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSEFVE-------VLVG-----VGSARIRDLFKRAKVNKPSV 520 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~p--fi~vs~sel~~-------~~vG-----~~~~~vr~lF~~Ar~~~P~I 520 (938)
+.++.-+.|.||+|+|||+|++++++..... -+.+++..... ..++ .+....+-.+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 4556679999999999999999999866321 12333321110 1011 12234455567777778999
Q ss_pred EEEcCcch
Q 002307 521 IFIDEIDA 528 (938)
Q Consensus 521 LfIDEIDa 528 (938)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999865
No 348
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.02 E-value=0.0021 Score=68.95 Aligned_cols=72 Identities=26% Similarity=0.414 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCC
Q 002307 502 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 581 (938)
Q Consensus 502 ~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~p 581 (938)
+.++.|-.+++|..+.|.||+.||--. +.+......+..++.++. ...+..||..|+.+
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTg------------------nLD~~t~~~V~~ll~~~~---~~~g~tii~VTHd~ 203 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTG------------------NLDSKTAKEVLELLRELN---KERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccc------------------cCChHHHHHHHHHHHHHH---HhcCCEEEEEcCCH
Confidence 345567788888889999999999532 133344455556666652 33355566677743
Q ss_pred CcCCccccCCCccceEEecc
Q 002307 582 DLLDPALLRPGRFDRKIRIR 601 (938)
Q Consensus 582 d~LDpALlRpGRFdr~I~V~ 601 (938)
.+.. +.|++|++.
T Consensus 204 -----~lA~--~~dr~i~l~ 216 (226)
T COG1136 204 -----ELAK--YADRVIELK 216 (226)
T ss_pred -----HHHH--hCCEEEEEe
Confidence 3333 567777663
No 349
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.02 E-value=0.00081 Score=80.31 Aligned_cols=63 Identities=25% Similarity=0.467 Sum_probs=44.6
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCCEEEEeC
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAG 491 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-g~pfi~vs~ 491 (938)
-|+|+.|++++++.+-+.+.... ..++ .....++|+||||+|||+||++||+-+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa-----~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAA-----QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHH-----HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 48899999999888876653210 0111 233478999999999999999999866 345555533
No 350
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.01 E-value=0.0024 Score=65.09 Aligned_cols=107 Identities=25% Similarity=0.380 Sum_probs=62.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCchh--------HHH-----------------HhhhhhHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF--------VEV-----------------LVGVGSARIR 507 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sel--------~~~-----------------~vG~~~~~vr 507 (938)
+.++.-+.|.||+|+|||+|.+++++.... --+.+++.+. ... ..=.+..+.|
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 445566999999999999999999985411 0111111110 000 0011234466
Q ss_pred HHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCc
Q 002307 508 DLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL 583 (938)
Q Consensus 508 ~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~ 583 (938)
-.+..|....|.++++||--.- .+......+.+++..+. . .+..+|.+|+..+.
T Consensus 105 v~la~al~~~p~~lllDEPt~~------------------LD~~~~~~l~~~l~~~~---~-~~~tii~~sh~~~~ 158 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSH------------------LDVEGERALNQAIAALK---A-AGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccc------------------cCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH
Confidence 6778888889999999997542 33334455556665552 1 23445556665543
No 351
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.00 E-value=0.012 Score=66.97 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=48.5
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~ 495 (938)
..+.+.+.++..|..++-.. + -..|..+.|+|-+|||||.+.+.+-+..+.+.+.++|-+..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~--~-------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecf 67 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNN--S-------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECF 67 (438)
T ss_pred cCccchHHHHHHHHHHhCCC--C-------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhc
Confidence 45677888877777665321 1 14577889999999999999999999999999999886543
No 352
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.00 E-value=0.0068 Score=56.59 Aligned_cols=24 Identities=46% Similarity=0.516 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el 482 (938)
++++++||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998887765
No 353
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.98 E-value=0.0023 Score=64.99 Aligned_cols=76 Identities=30% Similarity=0.493 Sum_probs=48.4
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-----------CEEEEeC-c-----hhHHHHh------hhhhHHHHHH
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------PFYQMAG-S-----EFVEVLV------GVGSARIRDL 509 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~elg~-----------pfi~vs~-s-----el~~~~v------G~~~~~vr~l 509 (938)
+.+.++.-+.|.||+|+|||+|++++++.... .+.++.- . ...+... =.+..+.|-.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHH
Confidence 34556677999999999999999999986421 1111110 0 1111110 0123455667
Q ss_pred HHHHHhCCCeEEEEcCcch
Q 002307 510 FKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 510 F~~Ar~~~P~ILfIDEIDa 528 (938)
+..|....|.++++||-.+
T Consensus 102 laral~~~p~~lllDEPt~ 120 (166)
T cd03223 102 FARLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHHHcCCCEEEEECCcc
Confidence 7778888999999999765
No 354
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.98 E-value=0.0015 Score=71.12 Aligned_cols=102 Identities=25% Similarity=0.351 Sum_probs=64.0
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC---CCEEEEe-Cc
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMA-GS 492 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg---~pfi~vs-~s 492 (938)
......+++++.-.....+.+.+++... ++..+++++.||+|+|||++++++..... ..++.+. ..
T Consensus 96 ~~~~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 96 FSSKPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp ETSS--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred cccccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 3456778899876666666666665542 12345899999999999999999998773 3344432 22
Q ss_pred hhHHH------H-hhhhhHHHHHHHHHHHhCCCeEEEEcCcch
Q 002307 493 EFVEV------L-VGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 493 el~~~------~-vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
++.-. + .........+++..+.+..|++|+++||..
T Consensus 166 E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 166 ELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 22110 0 001334577888889999999999999954
No 355
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.96 E-value=0.0024 Score=69.84 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.6
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
++.+.-+.|.||.|||||||.|++++
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 44455688999999999999999998
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.95 E-value=0.0027 Score=84.80 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=25.5
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+.++++.-+.|+|++|+|||+|++++.+
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34567777899999999999999999988
No 357
>PRK09354 recA recombinase A; Provisional
Probab=96.95 E-value=0.0041 Score=70.81 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=51.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH-H---hhh------------hhHHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-L---VGV------------GSARIRDLFKRAK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~-~---vG~------------~~~~vr~lF~~Ar 514 (938)
|++..+-++|+||||||||+|+-.++.++ +...++++..+-.+. + .|. .+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666779999999999999999886543 677777776542221 1 011 1112222222335
Q ss_pred hCCCeEEEEcCcchhhh
Q 002307 515 VNKPSVIFIDEIDALAT 531 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~ 531 (938)
...+.+|+||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999999875
No 358
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.004 Score=73.45 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
++.+.-|-|.|++|+|||++.|++-+
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44555699999999999999999987
No 359
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.94 E-value=0.0041 Score=74.94 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=25.5
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++++..+.|+||+|+|||+|++.+++..
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 392 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677789999999999999999999833
No 360
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.0054 Score=62.50 Aligned_cols=75 Identities=25% Similarity=0.301 Sum_probs=47.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCc--------------------hh------HHHHhhhhhHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGS--------------------EF------VEVLVGVGSAR 505 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~s--------------------el------~~~~vG~~~~~ 505 (938)
.+.++..+.|.||+|+|||+|++.+++.... --+.+++. .+ .+...=.+.++
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 3455667999999999999999999985410 00111110 00 01100112334
Q ss_pred HHHHHHHHHhCCCeEEEEcCcch
Q 002307 506 IRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 506 vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
.|-.+..|....|.|+++||-.+
T Consensus 102 qrv~laral~~~p~illlDEPt~ 124 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTS 124 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcc
Confidence 56667788888999999999765
No 361
>PLN03232 ABC transporter C family member; Provisional
Probab=96.93 E-value=0.0052 Score=82.13 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=25.8
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++++.-+.|+||+|+|||+|++++.++.
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 638 LEIPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345666679999999999999999999866
No 362
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.91 E-value=0.03 Score=62.16 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
..|..|.|+|+-|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999987663
No 363
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.91 E-value=0.0043 Score=67.43 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAG 491 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 491 (938)
|+.+..-++|.|+||+|||+++..+|..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 56667779999999999999999887653 667777765
No 364
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.90 E-value=0.00066 Score=68.44 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=36.9
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC---EEEEeCchh
Q 002307 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEF 494 (938)
Q Consensus 427 VvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p---fi~vs~sel 494 (938)
++|.++..++|...+. .. ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888777777654 11 12345789999999999999999997766333 777777655
No 365
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.90 E-value=0.0011 Score=82.82 Aligned_cols=207 Identities=18% Similarity=0.227 Sum_probs=118.6
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHhcCc--hhhhccCCCC-Cc-eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNP--ELFDKMGIKP-PH-GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~Lk~p--e~~~~lG~~~-p~-GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 492 (938)
+........++.|.......+.+.++..+++ ..|...+-.. .. .++++||||+|||+.+.++|.+.|..++..+.+
T Consensus 312 ~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas 391 (871)
T KOG1968|consen 312 EKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNAS 391 (871)
T ss_pred cccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcc
Confidence 3334445566666655444444444433222 2232222111 11 369999999999999999999999999999887
Q ss_pred hhHHHHh-----hh--hhHHHHHHH---HHHH-hCCC-eEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHH
Q 002307 493 EFVEVLV-----GV--GSARIRDLF---KRAK-VNKP-SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLL 560 (938)
Q Consensus 493 el~~~~v-----G~--~~~~vr~lF---~~Ar-~~~P-~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL 560 (938)
+..+... +. +...+...+ .... .+.. .||++||+|.+... . ...-..+.++.
T Consensus 392 ~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-d---------------Rg~v~~l~~l~ 455 (871)
T KOG1968|consen 392 DVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-D---------------RGGVSKLSSLC 455 (871)
T ss_pred ccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-h---------------hhhHHHHHHHH
Confidence 5443321 11 112233333 1100 0122 28999999987641 0 01112233333
Q ss_pred HHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCH
Q 002307 561 IELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTG 639 (938)
Q Consensus 561 ~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSg 639 (938)
. ...+-+|+++|..+......+. |-+..++|+.|+.+.+..-+...+....+. .+-.++++...+ +
T Consensus 456 ~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~ 522 (871)
T KOG1968|consen 456 K-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----G 522 (871)
T ss_pred H-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----c
Confidence 2 2345566677865554443333 555788999999998888777766554433 223467777665 5
Q ss_pred HHHHHHHHHHHHH
Q 002307 640 ARLAQLVQEAALV 652 (938)
Q Consensus 640 aDL~~Lv~eA~l~ 652 (938)
+||++.+..-...
T Consensus 523 ~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 523 GDIRQIIMQLQFW 535 (871)
T ss_pred cCHHHHHHHHhhh
Confidence 6888877765554
No 366
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.90 E-value=0.005 Score=63.17 Aligned_cols=109 Identities=25% Similarity=0.379 Sum_probs=63.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCchh--------HHH--H-------hhh------------h
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF--------VEV--L-------VGV------------G 502 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sel--------~~~--~-------vG~------------~ 502 (938)
.+.++.-+.|.||+|+|||+|++.+++.... --+.+++.+. ... + +|. +
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3556667999999999999999999986421 1122222111 000 0 010 2
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCC
Q 002307 503 SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD 582 (938)
Q Consensus 503 ~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd 582 (938)
..+.+-.+..|....|.++++||-..- .+......+.+++.++. ...+..+|.+|+.++
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~------------------LD~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~ 159 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSH------------------LDIAHQIELLELLRRLA---RERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccC------------------CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 234455677777789999999997541 23334455556666552 111335555677655
Q ss_pred c
Q 002307 583 L 583 (938)
Q Consensus 583 ~ 583 (938)
.
T Consensus 160 ~ 160 (180)
T cd03214 160 L 160 (180)
T ss_pred H
Confidence 3
No 367
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.88 E-value=0.0043 Score=66.07 Aligned_cols=38 Identities=29% Similarity=0.470 Sum_probs=31.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAG 491 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 491 (938)
|+.++.-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 67777789999999999999999886644 778887775
No 368
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0016 Score=73.96 Aligned_cols=24 Identities=50% Similarity=0.772 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+.-+-|.||+||||||+.|+||+
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 333477999999999999999998
No 369
>PRK06762 hypothetical protein; Provisional
Probab=96.86 E-value=0.0037 Score=62.92 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=33.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~ 498 (938)
|.-++|+|+||+|||++|+.++..++..++.++...+...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 45689999999999999999999997667777776665543
No 370
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.01 Score=68.61 Aligned_cols=110 Identities=13% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc-------CCCEEEEeCchhHH-------HH---hhh------hhHHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSEFVE-------VL---VGV------GSARIRDLFKRA 513 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el-------g~pfi~vs~sel~~-------~~---vG~------~~~~vr~lF~~A 513 (938)
.|+.++|+||+|+|||+++.-+|..+ +..+..+++..+.. .| .|. ....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46679999999999999999998754 34444444433221 11 111 122233333333
Q ss_pred HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCC-CeEEEEEecCCCCcCCccc
Q 002307 514 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG-KGVIFLAATNRRDLLDPAL 588 (938)
Q Consensus 514 r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~-~~ViVIAATN~pd~LDpAL 588 (938)
....+|+||.+..... +. ..+.++...++..... ..++|+.+|...+.+...+
T Consensus 253 --~~~DlVLIDTaGr~~~-----------------~~---~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK-----------------DF---MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --CCCCEEEEcCCCCCcc-----------------CH---HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 3456999999876431 11 1133333333333323 5678888887766665433
No 371
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.85 E-value=0.011 Score=62.78 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCCEEEEeC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAG 491 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~ 491 (938)
|+..+..++|.||||+|||+|+..++.+ .+.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6777788999999999999999987653 2556666665
No 372
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.85 E-value=0.0056 Score=64.09 Aligned_cols=98 Identities=26% Similarity=0.404 Sum_probs=52.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH----HhhhhhHHHHHHHHHHH---------hCCCeEEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV----LVGVGSARIRDLFKRAK---------VNKPSVIF 522 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~----~vG~~~~~vr~lF~~Ar---------~~~P~ILf 522 (938)
+-++|.||||||||++++.++..+ +..++.+..+.-... ..+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999986543 677777765432111 11111122222222111 12346999
Q ss_pred EcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCC
Q 002307 523 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR 580 (938)
Q Consensus 523 IDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~ 580 (938)
|||+..+.. ..+..++..... .+..+++++-.+.
T Consensus 99 VDEasmv~~----------------------~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVDS----------------------RQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-BH----------------------HHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccCH----------------------HHHHHHHHHHHh--cCCEEEEECCcch
Confidence 999877542 234555555432 3456777776664
No 373
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.85 E-value=0.0036 Score=64.34 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++..+.|.||+|+|||+|++.+++..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35566679999999999999999999853
No 374
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.82 E-value=0.0016 Score=73.95 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=46.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcC----CCEEEEeC-chhHH---------HHhhhhhHHHHHHHHHHHhCCCeEEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAG-SEFVE---------VLVGVGSARIRDLFKRAKVNKPSVIFI 523 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg----~pfi~vs~-sel~~---------~~vG~~~~~vr~lF~~Ar~~~P~ILfI 523 (938)
...+++.||+|+|||++++++.+... ..++.+.- .++.. .-+|.......+.++.+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 34689999999999999999988664 23333321 12110 012222233566777788899999999
Q ss_pred cCcc
Q 002307 524 DEID 527 (938)
Q Consensus 524 DEID 527 (938)
||+.
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9984
No 375
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0067 Score=62.91 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=23.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|++.+++.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456667999999999999999999973
No 376
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.80 E-value=0.014 Score=61.88 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=31.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se 493 (938)
|++++..++|.|+||+|||+++..++.+. +.+.++++..+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 56667779999999999999999887543 77777777644
No 377
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.79 E-value=0.0094 Score=65.13 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
|+..+..++++||||||||+++..+|.+. |-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56667779999999999999999886643 5677666643
No 378
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0018 Score=67.91 Aligned_cols=29 Identities=41% Similarity=0.705 Sum_probs=25.4
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+++.+...+.+.||+|||||+|...+|+
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 44566777899999999999999999998
No 379
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0055 Score=66.16 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=23.9
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
+.+.++..+-|.|++|||||+|++++|+
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 3355666788999999999999999998
No 380
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.0077 Score=64.60 Aligned_cols=69 Identities=29% Similarity=0.412 Sum_probs=45.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc--------CCCEEEEeC-chhHHHHhhh-------------hhHHHHHHHHHHHhCC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA--------GVPFYQMAG-SEFVEVLVGV-------------GSARIRDLFKRAKVNK 517 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el--------g~pfi~vs~-sel~~~~vG~-------------~~~~vr~lF~~Ar~~~ 517 (938)
+.||.||||||||++.|-+|+-+ ...+..++- +++.....|. ..-+-..++...+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 68999999999999999999855 223344443 2222222221 1112234566678899
Q ss_pred CeEEEEcCcch
Q 002307 518 PSVIFIDEIDA 528 (938)
Q Consensus 518 P~ILfIDEIDa 528 (938)
|.|+++|||..
T Consensus 219 PEViIvDEIGt 229 (308)
T COG3854 219 PEVIIVDEIGT 229 (308)
T ss_pred CcEEEEecccc
Confidence 99999999965
No 381
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.77 E-value=0.0024 Score=62.88 Aligned_cols=39 Identities=36% Similarity=0.652 Sum_probs=31.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG 500 (938)
+|+|+|+||+|||++|+.+|..++.+++.. ..+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcC
Confidence 479999999999999999999999998754 344443333
No 382
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.76 E-value=0.0026 Score=81.16 Aligned_cols=58 Identities=22% Similarity=0.384 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCC
Q 002307 502 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 581 (938)
Q Consensus 502 ~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~p 581 (938)
+.++.|-.+++|.-.+|.||+|||+-.- .+.+.++.+++.|+.. ..+...+|| ++|.
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSA------------------LDseSErvVQeALd~a---~~gRT~IvI--AHRL 1185 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSA------------------LDSESERVVQEALDRA---MEGRTTIVI--AHRL 1185 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchh------------------hhhhhHHHHHHHHHHh---hcCCcEEEE--ecch
Confidence 4567788899999999999999998763 4555667777666553 344445665 3444
Q ss_pred C
Q 002307 582 D 582 (938)
Q Consensus 582 d 582 (938)
.
T Consensus 1186 S 1186 (1228)
T KOG0055|consen 1186 S 1186 (1228)
T ss_pred h
Confidence 4
No 383
>PRK13947 shikimate kinase; Provisional
Probab=96.75 E-value=0.0014 Score=66.12 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=28.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
+|+|.|+||||||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999997643
No 384
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.73 E-value=0.033 Score=70.37 Aligned_cols=157 Identities=19% Similarity=0.282 Sum_probs=84.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch-------hHHHHhhh------h-----------------hHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE-------FVEVLVGV------G-----------------SARIRD 508 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se-------l~~~~vG~------~-----------------~~~vr~ 508 (938)
+-++|+||+|.|||+++...+...+ ++..++... |...+... . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999887776 665554421 11111000 0 001122
Q ss_pred HHHHHH-hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCc-
Q 002307 509 LFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDP- 586 (938)
Q Consensus 509 lF~~Ar-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDp- 586 (938)
++.... ...|.+|+|||++.+. +......+..++..+ .....+|| ++...-.++-
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~------------------~~~~~~~l~~l~~~~----~~~~~lv~-~sR~~~~~~~~ 168 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT------------------NPEIHEAMRFFLRHQ----PENLTLVV-LSRNLPPLGIA 168 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC------------------ChHHHHHHHHHHHhC----CCCeEEEE-EeCCCCCCchH
Confidence 333222 2678999999999863 122334455555443 22334444 4443111211
Q ss_pred cccCCCccceEEecc----CCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHH
Q 002307 587 ALLRPGRFDRKIRIR----APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 587 ALlRpGRFdr~I~V~----lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~L 645 (938)
.+.- -+..+.+. ..+.++-.+++...+.. .+ ...++..+.+.|.|+ +.-+..+
T Consensus 169 ~l~~---~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gw-p~~l~l~ 225 (903)
T PRK04841 169 NLRV---RDQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGW-ATALQLI 225 (903)
T ss_pred hHHh---cCcceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCCh-HHHHHHH
Confidence 1111 12234444 55778888888765442 12 233467788888885 5445433
No 385
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0032 Score=64.49 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=62.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCC--EEEEeCch-----------------------hH------HHHh--hh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE-----------------------FV------EVLV--GV 501 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~p--fi~vs~se-----------------------l~------~~~v--G~ 501 (938)
+.++.-+.|.||+|+|||+|++++++..... -+.+++.+ +. +... =.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 4556678899999999999999999854210 01111100 00 0000 11
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCC
Q 002307 502 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 581 (938)
Q Consensus 502 ~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~p 581 (938)
+..+.|-.+..|....|.++++||-.+- .+......+.+++.++. ...+..+|.+|+.+
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~------------------LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~ 161 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSA------------------LDPITRREVRALLKSLQ---AQLGITVVLVTHDL 161 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCccc------------------CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCH
Confidence 2344566677788889999999997541 33334455556665553 22123455566654
Q ss_pred CcC
Q 002307 582 DLL 584 (938)
Q Consensus 582 d~L 584 (938)
+.+
T Consensus 162 ~~~ 164 (178)
T cd03229 162 DEA 164 (178)
T ss_pred HHH
Confidence 433
No 386
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.73 E-value=0.0074 Score=62.43 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 002307 461 VLLEGPPGCGKTLVAKAIA 479 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA 479 (938)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 387
>PRK14974 cell division protein FtsY; Provisional
Probab=96.72 E-value=0.016 Score=65.89 Aligned_cols=73 Identities=27% Similarity=0.341 Sum_probs=45.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH-------HH---hhh----------hhHHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-------VL---VGV----------GSARIRDLFKRA 513 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~-------~~---vG~----------~~~~vr~lF~~A 513 (938)
.|.-++|+||||+|||+++..+|..+ +..+..+++..+.. .+ .|. ....+.+.+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46779999999999999888888754 55665565543211 11 111 012233444455
Q ss_pred HhCCCeEEEEcCcchh
Q 002307 514 KVNKPSVIFIDEIDAL 529 (938)
Q Consensus 514 r~~~P~ILfIDEIDaL 529 (938)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555668999988664
No 388
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0027 Score=67.49 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCcch
Q 002307 502 GSARIRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 502 ~~~~vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
+.+..|-.+++|....|.|+++||.-+
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTS 165 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTS 165 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcc
Confidence 445677788899999999999999765
No 389
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.71 E-value=0.0046 Score=64.60 Aligned_cols=29 Identities=38% Similarity=0.574 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++.+++..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566679999999999999999999853
No 390
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.70 E-value=0.016 Score=59.55 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=28.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 492 (938)
-+|+.|+||+|||++|..++.+.+.+++++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 489999999999999999999988887777654
No 391
>PRK03839 putative kinase; Provisional
Probab=96.70 E-value=0.0014 Score=67.02 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=28.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
.|+|.|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997653
No 392
>PRK04328 hypothetical protein; Provisional
Probab=96.70 E-value=0.016 Score=62.92 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~s 492 (938)
|++++..+|++||||||||+|+..++.+ .|-+.++++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 5677778999999999999999887543 36677777653
No 393
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.019 Score=66.86 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCch
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSE 493 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~se 493 (938)
.+.-++|.||+|+|||+++..+|... |..+..+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 35568999999999999999998754 44555555544
No 394
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.69 E-value=0.0094 Score=61.85 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=25.2
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.+.++.-+.|.||+|+|||+|++++++..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 21 ITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 335566779999999999999999999853
No 395
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.68 E-value=0.0065 Score=63.70 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++.+++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35566679999999999999999999853
No 396
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.68 E-value=0.0051 Score=64.32 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
..+.-++|+||.|+|||++.++++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3445699999999999999999983
No 397
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.025 Score=65.44 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhH----HH---H-
Q 002307 431 DEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV----EV---L- 498 (938)
Q Consensus 431 deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~----~~---~- 498 (938)
++.++.+.+.+.. +..+..+ ...|+-++|+||+|+|||+++..||..+ +..+..+++..+. +. +
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 4555555554443 3332211 2335779999999999999999999866 4455555554322 11 1
Q ss_pred --------hhhhhHHHHHHHHHHHh-CCCeEEEEcCcch
Q 002307 499 --------VGVGSARIRDLFKRAKV-NKPSVIFIDEIDA 528 (938)
Q Consensus 499 --------vG~~~~~vr~lF~~Ar~-~~P~ILfIDEIDa 528 (938)
+......+.+.+..+.. ....+||||-...
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 01233445556655543 2356999997654
No 398
>PRK13948 shikimate kinase; Provisional
Probab=96.67 E-value=0.0039 Score=64.89 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=35.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG 500 (938)
+++..|+|.|.+|+|||++++.+|..++.+|+.. ..+.....|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~--D~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDT--DRYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEC--CHHHHHHHh
Confidence 4568899999999999999999999999999854 445554444
No 399
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.65 E-value=0.0077 Score=59.18 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=39.7
Q ss_pred CcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 425 SDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+|.|+.-+.+.+.+.+.. +.++. -+.|--+-++|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4588999999988887775 55542 1223345599999999999999999975
No 400
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0099 Score=63.24 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=22.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+....-.-|.||+|||||++.|++-+
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHh
Confidence 344445578999999999999999966
No 401
>PRK04296 thymidine kinase; Provisional
Probab=96.64 E-value=0.0064 Score=63.34 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=41.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC--c--hhHHH---Hhhhh-----hHHHHHHHHHHH--hCCCeEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG--S--EFVEV---LVGVG-----SARIRDLFKRAK--VNKPSVIF 522 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~--s--el~~~---~vG~~-----~~~vr~lF~~Ar--~~~P~ILf 522 (938)
-.+++||+|+|||+++..++.++ +..++.+.. . ..... ..|.. .....+++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 556555533 1 11000 01110 112233444432 34567999
Q ss_pred EcCcchh
Q 002307 523 IDEIDAL 529 (938)
Q Consensus 523 IDEIDaL 529 (938)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999654
No 402
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0084 Score=62.60 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++.-+.+.||.|+|||+|.|.||+-+
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHccc
Confidence 4566679999999999999999999843
No 403
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.63 E-value=0.0046 Score=64.99 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34566679999999999999999999853
No 404
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0092 Score=62.45 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566678999999999999999999853
No 405
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.61 E-value=0.0015 Score=72.96 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=48.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeC-chhHH-------HHhhhhhHHHHHHHHHHHhCCCeEEEEc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG-SEFVE-------VLVGVGSARIRDLFKRAKVNKPSVIFID 524 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~-sel~~-------~~vG~~~~~vr~lF~~Ar~~~P~ILfID 524 (938)
.++++++||+|+|||++++++++.. +..++.+.- .++.- .........+.+++..+.+..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4589999999999999999999875 233333321 11110 0011122257788899999999999999
Q ss_pred Ccc
Q 002307 525 EID 527 (938)
Q Consensus 525 EID 527 (938)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 984
No 406
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.61 E-value=0.0021 Score=65.58 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=32.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
+-++|.|+||+|||++|++++.+.+.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 46899999999999999999999998888776665544
No 407
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.61 E-value=0.0096 Score=62.23 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCCC-ceEEEEcCCCchHHHHHHHHH
Q 002307 455 IKPP-HGVLLEGPPGCGKTLVAKAIA 479 (938)
Q Consensus 455 ~~~p-~GVLL~GPPGTGKT~LArALA 479 (938)
+..+ +.++|+||.|+|||+|.+.++
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 3344 359999999999999999998
No 408
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.60 E-value=0.0056 Score=63.69 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++..+.|.||+|+|||+|.+.+++..
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45666779999999999999999999875
No 409
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.59 E-value=0.046 Score=57.62 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=26.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 487 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi 487 (938)
+.-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 346899999999999999999999987653
No 410
>PTZ00202 tuzin; Provisional
Probab=96.57 E-value=0.058 Score=63.16 Aligned_cols=63 Identities=17% Similarity=0.320 Sum_probs=50.0
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 492 (938)
+-...+.+|.+....+|..++... ....|.-+.|+||+|||||+|++.++..++.+.+.++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 334578899999999998887532 223455789999999999999999999999887777665
No 411
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.57 E-value=0.0044 Score=64.87 Aligned_cols=29 Identities=45% Similarity=0.664 Sum_probs=24.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++..+.|.||+|+|||+|++.+++..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35566679999999999999999999853
No 412
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.56 E-value=0.0055 Score=64.60 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=25.0
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.+.++.-+.|.||+|+|||+|++++++.
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 44566677999999999999999999984
No 413
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.56 E-value=0.0024 Score=65.98 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCc-hhHH---HH----------hhhhhHHHHHHHHHHHhCCCe
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGS-EFVE---VL----------VGVGSARIRDLFKRAKVNKPS 519 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~s-el~~---~~----------vG~~~~~vr~lF~~Ar~~~P~ 519 (938)
+....++|.||+|+|||++++++++... ...+.+... ++.. .. .+.......+++..+.+..|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3456899999999999999999998652 122222111 1100 00 011223466777788888999
Q ss_pred EEEEcCcc
Q 002307 520 VIFIDEID 527 (938)
Q Consensus 520 ILfIDEID 527 (938)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999984
No 414
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0055 Score=68.12 Aligned_cols=26 Identities=46% Similarity=0.675 Sum_probs=22.7
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
++.+.-+-|.||+|+|||++.|.||+
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 44555689999999999999999998
No 415
>PRK00625 shikimate kinase; Provisional
Probab=96.55 E-value=0.0022 Score=66.16 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=28.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998764
No 416
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0048 Score=62.12 Aligned_cols=32 Identities=28% Similarity=0.699 Sum_probs=29.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
.+||++|-||||||+++..+|...+.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 37999999999999999999999999988663
No 417
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.52 E-value=0.0082 Score=62.53 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35566779999999999999999999853
No 418
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.52 E-value=0.0068 Score=66.54 Aligned_cols=95 Identities=19% Similarity=0.271 Sum_probs=57.4
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC---CCEEEEeC-chhHH
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAG-SEFVE 496 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg---~pfi~vs~-sel~~ 496 (938)
..+++++.-.++..+.|.+++. .....+++.||+|+|||++++++..... ..++.+.. .++.-
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 3456676544554445544432 1223589999999999999999977663 33444421 11110
Q ss_pred H------HhhhhhHHHHHHHHHHHhCCCeEEEEcCcch
Q 002307 497 V------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 497 ~------~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
. ..........+.+..+.+..|++|+++|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0 0011112356777788889999999999954
No 419
>PRK13946 shikimate kinase; Provisional
Probab=96.51 E-value=0.0061 Score=62.93 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=30.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
++.|+|.|++|||||++++.+|..+|.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999988654
No 420
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.51 E-value=0.0023 Score=65.25 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=28.3
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
|+|+||||+|||++|+.+|.+.+.+. ++..+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHHH
Confidence 68999999999999999999998655 455555443
No 421
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.0047 Score=69.98 Aligned_cols=25 Identities=44% Similarity=0.784 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
..+.-+.|.||+||||||+.|.||+
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3444589999999999999999998
No 422
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.50 E-value=0.028 Score=66.01 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=30.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se 493 (938)
..|..++++|++|+|||+++..+|..+ +..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 457789999999999999999998866 55666666654
No 423
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.49 E-value=0.0048 Score=64.84 Aligned_cols=29 Identities=38% Similarity=0.519 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++..+.|.||+|+|||+|+++|++..
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34556679999999999999999999853
No 424
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.49 E-value=0.011 Score=68.50 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
.+.-++|+||||+|||+|++++++...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 445599999999999999999999753
No 425
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.01 Score=62.12 Aligned_cols=29 Identities=38% Similarity=0.565 Sum_probs=24.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++..+.|.||+|+|||+|++.+++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 35566679999999999999999999864
No 426
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.49 E-value=0.02 Score=61.92 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=28.3
Q ss_pred EEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchh
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 494 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel 494 (938)
|+|+|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999877 567777766544
No 427
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.49 E-value=0.0066 Score=64.42 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++..+.|.||+|+|||+|++++++..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35566779999999999999999999743
No 428
>PRK10536 hypothetical protein; Provisional
Probab=96.48 E-value=0.012 Score=64.42 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=33.8
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..+..|.+.+.....+...+. + ..-+++.||+|||||+||.++|.+
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~---~-----------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIE---S-----------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHh---c-----------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4455667777776665554432 1 126899999999999999999885
No 429
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0074 Score=62.24 Aligned_cols=31 Identities=29% Similarity=0.547 Sum_probs=28.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.+|.|+|++|+|||++.+++|..++.+|+-.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 4699999999999999999999999999855
No 430
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.48 E-value=0.0032 Score=72.45 Aligned_cols=29 Identities=45% Similarity=0.660 Sum_probs=24.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.+..+.-+.|.||+|||||+|.++||+.
T Consensus 35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 35 LTINNGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 33455667999999999999999999983
No 431
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0031 Score=72.02 Aligned_cols=28 Identities=32% Similarity=0.682 Sum_probs=23.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|.++||+.
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 3455566889999999999999999984
No 432
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0031 Score=66.12 Aligned_cols=28 Identities=43% Similarity=0.740 Sum_probs=24.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|++++++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3455667999999999999999999984
No 433
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.47 E-value=0.0049 Score=78.74 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
++++..+.|+||+|||||++.+.+++
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~R 401 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLAR 401 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 55666799999999999999999998
No 434
>PRK13949 shikimate kinase; Provisional
Probab=96.46 E-value=0.0026 Score=65.13 Aligned_cols=31 Identities=39% Similarity=0.628 Sum_probs=28.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
.|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999988754
No 435
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.46 E-value=0.015 Score=65.29 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=31.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 493 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~se 493 (938)
|+..+.-++|+||||||||.++-.+|..+ +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56667779999999999999999998763 33677777654
No 436
>PRK14532 adenylate kinase; Provisional
Probab=96.46 E-value=0.0026 Score=65.38 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=29.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
.++|.||||+|||++|+.||...+.+++ +..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45555544
No 437
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.46 E-value=0.0089 Score=62.44 Aligned_cols=28 Identities=43% Similarity=0.573 Sum_probs=24.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|.+.+++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3566677999999999999999999986
No 438
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.46 E-value=0.01 Score=59.35 Aligned_cols=36 Identities=31% Similarity=0.629 Sum_probs=30.2
Q ss_pred EEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~ 496 (938)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999988 66777777665544
No 439
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.46 E-value=0.011 Score=63.27 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|+++|++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4566777999999999999999999974
No 440
>PRK06217 hypothetical protein; Validated
Probab=96.45 E-value=0.0027 Score=65.36 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=28.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
.|+|.|+||+|||+++++|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 441
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.45 E-value=0.041 Score=62.13 Aligned_cols=61 Identities=28% Similarity=0.327 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHH-hcCc-hhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 431 DEAVEELQELVRY-LKNP-ELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 431 deak~eL~eiV~~-Lk~p-e~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
+..++.+.+.+.. +... ..+ ......|.-++|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPL-NIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccc-cccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4455556654443 3311 111 1122456679999999999999999999865 4455555554
No 442
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.44 E-value=0.0027 Score=61.81 Aligned_cols=30 Identities=37% Similarity=0.804 Sum_probs=28.0
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
|.|.|+||||||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 443
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.44 E-value=0.011 Score=61.78 Aligned_cols=62 Identities=27% Similarity=0.398 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCC
Q 002307 502 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 581 (938)
Q Consensus 502 ~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~p 581 (938)
+.+..|-.++.|--++|.+|+-||--. +.+++...-+.+++.++. ..+..|+.||+..
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTG------------------NLDp~~s~~im~lfeein----r~GtTVl~ATHd~ 197 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTG------------------NLDPDLSWEIMRLFEEIN----RLGTTVLMATHDL 197 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCC------------------CCChHHHHHHHHHHHHHh----hcCcEEEEEeccH
Confidence 345567788889999999999999421 144445555666777764 2345666677765
Q ss_pred CcCC
Q 002307 582 DLLD 585 (938)
Q Consensus 582 d~LD 585 (938)
+.++
T Consensus 198 ~lv~ 201 (223)
T COG2884 198 ELVN 201 (223)
T ss_pred HHHH
Confidence 5443
No 444
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.43 E-value=0.013 Score=59.24 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.++..+|+||.|+|||.+.++++-
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999853
No 445
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.0061 Score=64.30 Aligned_cols=29 Identities=38% Similarity=0.661 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556678999999999999999999853
No 446
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.42 E-value=0.0068 Score=63.27 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=24.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|++++++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456667999999999999999999984
No 447
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.42 E-value=0.0038 Score=65.31 Aligned_cols=29 Identities=38% Similarity=0.512 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++..+.|.||+|+|||+|++.+++..
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35566679999999999999999999853
No 448
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.41 E-value=0.012 Score=62.08 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.+.++.-+.|.||+|+|||+|++++++.
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556667999999999999999999984
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.40 E-value=0.013 Score=69.60 Aligned_cols=78 Identities=27% Similarity=0.274 Sum_probs=55.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHh------hh----------------------h
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV----------------------G 502 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~v------G~----------------------~ 502 (938)
|+.++..+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+. |. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56777789999999999999999997755 66778777655433211 10 0
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCcchhhh
Q 002307 503 SARIRDLFKRAKVNKPSVIFIDEIDALAT 531 (938)
Q Consensus 503 ~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~ 531 (938)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 23445556666777899999999988753
No 450
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.40 E-value=0.021 Score=60.10 Aligned_cols=108 Identities=22% Similarity=0.347 Sum_probs=58.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhH-------HHH---hhh----------hhHHHHHHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV-------EVL---VGV----------GSARIRDLFKRAK 514 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~-------~~~---vG~----------~~~~vr~lF~~Ar 514 (938)
|+-++|+||+|+|||+.+--+|..+ +..+--+++..+. ..| .|. .....++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5678999999999999888887754 4444444433221 111 111 1123445566666
Q ss_pred hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCC
Q 002307 515 VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLD 585 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LD 585 (938)
...-.+|+||=..... .+.+...-+..++..+ ......+|+.+|...+.++
T Consensus 81 ~~~~D~vlIDT~Gr~~-----------------~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP-----------------RDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSS-----------------THHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcch-----------------hhHHHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 5556789988754321 2222333444555544 3334566666666555554
No 451
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.39 E-value=0.016 Score=72.01 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=66.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh---cCCCEEEEeCchhHH-H---Hhhh------------hhHHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGSEFVE-V---LVGV------------GSARIRDLFKRAK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~sel~~-~---~vG~------------~~~~vr~lF~~Ar 514 (938)
|+.....++|+||||||||+|+..++.. .|.+.++++..+-.. . -.|. .+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 5666777999999999999999776443 366777776554222 1 0111 1111111222234
Q ss_pred hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe
Q 002307 515 VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA 577 (938)
...+.+|+||-|.++.++..-. +...+ .......+.++++|..|..+-...++.+|.+
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~-g~~g~----~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~T 193 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELE-GEMGD----SHVGLQARLMSQALRKMTGALNNSGTTAIFI 193 (790)
T ss_pred cCCCeEEEEcchhhhcchhhcc-CCCCc----ccHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4578999999999998632110 00000 0011223344566666655545566666654
No 452
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.39 E-value=0.021 Score=63.70 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=31.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 493 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~se 493 (938)
|+..+.-++|+||||+|||+++-.+|..+ +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56666778999999999999999998764 23677777654
No 453
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.37 E-value=0.0078 Score=63.85 Aligned_cols=28 Identities=39% Similarity=0.420 Sum_probs=23.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|++++++.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456667899999999999999999984
No 454
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.37 E-value=0.012 Score=65.62 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=23.2
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++.-+.|.||+|+|||||.+++++..
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 3444558999999999999999999843
No 455
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0087 Score=63.65 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=25.3
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.+.++..+.|.||+|+|||+|++++++..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345666779999999999999999999853
No 456
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0053 Score=64.78 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566679999999999999999999843
No 457
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.35 E-value=0.012 Score=64.53 Aligned_cols=78 Identities=27% Similarity=0.298 Sum_probs=51.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--EEEEeCch--------hHH-----------------HHhh--hhh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE--------FVE-----------------VLVG--VGS 503 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p--fi~vs~se--------l~~-----------------~~vG--~~~ 503 (938)
+.+..+..+-|+|++||||||++|.+.+-..-. -+.+.+.+ ..+ .|.. .+.
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 345666789999999999999999999854211 12222211 111 1111 144
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 504 ARIRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 504 ~~vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
++.|-.+++|....|.+++.||..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhc
Confidence 566777888888999999999987643
No 458
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.35 E-value=0.0067 Score=63.35 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=24.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++..+.|.||+|+|||+|++.+++.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456667999999999999999999984
No 459
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.35 E-value=0.01 Score=62.33 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556679999999999999999999843
No 460
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.34 E-value=0.0056 Score=64.45 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566679999999999999999999843
No 461
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.34 E-value=0.006 Score=70.19 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=47.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcC-----CCEEEEeCc-hhH-----------HHHhhhhhHHHHHHHHHHHhCCCeEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMAGS-EFV-----------EVLVGVGSARIRDLFKRAKVNKPSVI 521 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg-----~pfi~vs~s-el~-----------~~~vG~~~~~vr~lF~~Ar~~~P~IL 521 (938)
..+|++||+|+|||++++++.+... ..++.+.-+ ++. ..-+|.........+..+.+..|++|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3589999999999999999987662 344444211 211 11122222345667778888999999
Q ss_pred EEcCcch
Q 002307 522 FIDEIDA 528 (938)
Q Consensus 522 fIDEIDa 528 (938)
+++|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999854
No 462
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.33 E-value=0.016 Score=65.34 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=63.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCchh-H-HHH------hhhh--------------
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEF-V-EVL------VGVG-------------- 502 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sel-~-~~~------vG~~-------------- 502 (938)
|+....-+.|+||||+|||.|+..+|-.. +...++++..+- . +.. .|..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 56666778999999999999999887432 346777765441 1 100 0110
Q ss_pred -hHHHHHHHH----HHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe
Q 002307 503 -SARIRDLFK----RAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (938)
Q Consensus 503 -~~~vr~lF~----~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA 577 (938)
.....+++. ......+.+|+||-|-++....-.+.+ ...++.+.+++++..|..+-...++.|+.+
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g---------~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRG---------ELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCcc---------chHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 011111222 223456889999999988653211100 112233445666555554444456666644
No 463
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.33 E-value=0.0033 Score=64.42 Aligned_cols=35 Identities=34% Similarity=0.653 Sum_probs=28.8
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
|+|+||||+|||++|+.||.+.+.+++. ..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHHH
Confidence 7999999999999999999999877654 4555443
No 464
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.33 E-value=0.026 Score=58.09 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=46.1
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-----HH------------hhhhhHHHHHHHHHHHhCCCeEEEE
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-----VL------------VGVGSARIRDLFKRAKVNKPSVIFI 523 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-----~~------------vG~~~~~vr~lF~~Ar~~~P~ILfI 523 (938)
+|+.|++|+|||++|..++...+.+.+++....-.+ .. ..+....+.+.+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 689999999999999999988777887776443211 10 001122333333222 14668999
Q ss_pred cCcchhhhhh
Q 002307 524 DEIDALATRR 533 (938)
Q Consensus 524 DEIDaL~~~r 533 (938)
|-+..+....
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9998887553
No 465
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.012 Score=63.04 Aligned_cols=29 Identities=41% Similarity=0.533 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566679999999999999999999843
No 466
>PRK14531 adenylate kinase; Provisional
Probab=96.32 E-value=0.0038 Score=64.32 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=29.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
.-|+++||||+|||++++.+|...|.+.+. +.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHHH
Confidence 358999999999999999999999988765 444443
No 467
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.31 E-value=0.0034 Score=61.96 Aligned_cols=32 Identities=38% Similarity=0.748 Sum_probs=26.8
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
++|+|+||+|||++|+.++...+.+++ +...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999887665 44444
No 468
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0082 Score=69.20 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=24.4
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.+.++.-+.|.||+|||||+|.++||+-
T Consensus 40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 40 LTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34556667899999999999999999983
No 469
>PF13479 AAA_24: AAA domain
Probab=96.31 E-value=0.027 Score=59.65 Aligned_cols=67 Identities=25% Similarity=0.420 Sum_probs=38.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh---HHHHhh------hhhHHHHHHHHHH--HhCCCeEEEEcCc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF---VEVLVG------VGSARIRDLFKRA--KVNKPSVIFIDEI 526 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel---~~~~vG------~~~~~vr~lF~~A--r~~~P~ILfIDEI 526 (938)
+-.++|||+||+|||++|..+ +.|++ +++..- ...+.. .+-..+.+.+..+ ....-.+|+||.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~-id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLF-IDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEE-EEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 346899999999999999887 33332 222111 111100 0223344444433 2334569999998
Q ss_pred chh
Q 002307 527 DAL 529 (938)
Q Consensus 527 DaL 529 (938)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 876
No 470
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.30 E-value=0.0042 Score=70.44 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=49.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC--CCEEEE-eCchhHH-----------HH--hhhhhHHHHHHHHHHHhCCCe
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQM-AGSEFVE-----------VL--VGVGSARIRDLFKRAKVNKPS 519 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg--~pfi~v-s~sel~~-----------~~--vG~~~~~vr~lF~~Ar~~~P~ 519 (938)
+..++++++|++|+|||++++++..... ..++.+ +..++.- .. .|...-...+++..+.+..|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 3456899999999999999999998663 223322 1111110 00 111223467888999999999
Q ss_pred EEEEcCcch
Q 002307 520 VIFIDEIDA 528 (938)
Q Consensus 520 ILfIDEIDa 528 (938)
.|++.|+-.
T Consensus 238 ~IivGEiR~ 246 (332)
T PRK13900 238 RIIVGELRG 246 (332)
T ss_pred eEEEEecCC
Confidence 999999853
No 471
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.30 E-value=0.045 Score=59.51 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=72.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCchh---HHHH-----h-hh--------hhHHHHH----HHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF---VEVL-----V-GV--------GSARIRD----LFKR 512 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sel---~~~~-----v-G~--------~~~~vr~----lF~~ 512 (938)
..|-.+++.|++|||||++++.+...... ..+.+-++.. ...+ + .. .-.+... ....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 44567999999999999999999776532 2222211111 1111 0 00 0001111 1111
Q ss_pred HHh---CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCcccc
Q 002307 513 AKV---NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALL 589 (938)
Q Consensus 513 Ar~---~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALl 589 (938)
... ..+++|+||++.. . ......+.+++.. ...-++-+|..+.....+|+.++
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~-----------------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR 146 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K-----------------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIR 146 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c-----------------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHh
Confidence 111 2367999999732 0 0122345555543 23345778888888889999986
Q ss_pred CCCccceEEeccCCChhhHHHHHHHH
Q 002307 590 RPGRFDRKIRIRAPNAKGRTEILKIH 615 (938)
Q Consensus 590 RpGRFdr~I~V~lPd~eeR~eILr~~ 615 (938)
. -.+..+-+. -+..+...|++.+
T Consensus 147 ~--n~~y~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 147 S--NIDYFIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred h--cceEEEEec-CcHHHHHHHHHhc
Confidence 6 567666554 4555555555544
No 472
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.30 E-value=0.0046 Score=69.83 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=47.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEe-CchhHHH------HhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA-GSEFVEV------LVGVGSARIRDLFKRAKVNKPSVIFIDE 525 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs-~sel~~~------~vG~~~~~vr~lF~~Ar~~~P~ILfIDE 525 (938)
.+++|+.|++|+|||++++++++.. +..++.+. ..|+.-. +.....-...+++..+.+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4589999999999999999999875 23333332 2222110 0011223467788888999999999999
Q ss_pred cc
Q 002307 526 ID 527 (938)
Q Consensus 526 ID 527 (938)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 84
No 473
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.30 E-value=0.01 Score=64.36 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.-+.|.||+|+|||+|+++|++..
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568999999999999999999854
No 474
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.30 E-value=0.013 Score=65.72 Aligned_cols=35 Identities=29% Similarity=0.548 Sum_probs=31.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
+.++..|+|+|+||||||++++.+|..+|.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45677899999999999999999999999999943
No 475
>PLN03130 ABC transporter C family member; Provisional
Probab=96.30 E-value=0.014 Score=78.67 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.6
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+.++++.-|-|+|++|+|||+|++++.+
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~r 1287 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFR 1287 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44567777899999999999999999988
No 476
>PHA02624 large T antigen; Provisional
Probab=96.29 E-value=0.0068 Score=72.95 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=69.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 533 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r 533 (938)
|++..+.++|+||||||||+|+.+|++.++...+.++++.-... |...-.....+++||++..-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 44555689999999999999999999999776777876542221 222222223488889875432211
Q ss_pred cCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC-cCC------Ce-----EEEEEecCCCCcCCccccCCCccceEEecc
Q 002307 534 QGIFKDTTDHLYNAATQERETTLNQLLIELDGF-DTG------KG-----VIFLAATNRRDLLDPALLRPGRFDRKIRIR 601 (938)
Q Consensus 534 ~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~-~~~------~~-----ViVIAATN~pd~LDpALlRpGRFdr~I~V~ 601 (938)
..-. .+..+ .-+..|-..|||. .-+ .. --.|.|||. ..||..+.- ||..++.|.
T Consensus 495 ~~Lp---~G~~~--------dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 495 KDLP---SGQGM--------NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred ccCC---ccccc--------chhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 0000 00000 0122333445654 110 00 124557884 567777776 898888885
Q ss_pred C
Q 002307 602 A 602 (938)
Q Consensus 602 l 602 (938)
.
T Consensus 561 ~ 561 (647)
T PHA02624 561 P 561 (647)
T ss_pred c
Confidence 3
No 477
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.0092 Score=68.16 Aligned_cols=29 Identities=48% Similarity=0.728 Sum_probs=24.5
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.+.++.-+.|.||+|||||+|.+.||+.
T Consensus 27 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 34556667999999999999999999984
No 478
>PRK06696 uridine kinase; Validated
Probab=96.28 E-value=0.0084 Score=63.80 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=33.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~ 496 (938)
.|.-|.|.|+||+|||++|+.|+..+ |.+++.++..+|..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 45678999999999999999999988 77888888777653
No 479
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.27 E-value=0.019 Score=59.21 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|++++++.
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3556667999999999999999999984
No 480
>PRK13764 ATPase; Provisional
Probab=96.27 E-value=0.0052 Score=74.48 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=42.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcC---CCEEEEe-CchhH-----HHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcch
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMA-GSEFV-----EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg---~pfi~vs-~sel~-----~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDa 528 (938)
.+++|++||||+|||+++++++..+. ..+..+. ..++. ..+.. ...........+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998763 2232321 11211 11100 001122333334567899999999853
No 481
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.27 E-value=0.0086 Score=68.43 Aligned_cols=28 Identities=46% Similarity=0.705 Sum_probs=23.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|.+.||+.
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3455667899999999999999999984
No 482
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.26 E-value=0.005 Score=64.50 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566679999999999999999999853
No 483
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.021 Score=61.88 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=35.6
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+-+.|++|.-.-.-|.-|..+ .+.+.+.....|+||.|+|||+|.+.++++
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~i-----------sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDL-----------SWQVNPGEHWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred cceEEecceEEEECCEeecccc-----------ceeecCCCcEEEECCCCCCHHHHHHHHhcc
Confidence 3446677765333323333332 344667778999999999999999999874
No 484
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.26 E-value=0.0086 Score=65.01 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=25.4
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.+.++..+.|.||+|+|||+|++.|++..
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345666779999999999999999999853
No 485
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.25 E-value=0.0048 Score=66.42 Aligned_cols=38 Identities=24% Similarity=0.472 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
.|..|+|.||||+|||++|+.+|...+++++.+ .+++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 344599999999999999999999999887765 44443
No 486
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.01 Score=63.60 Aligned_cols=29 Identities=34% Similarity=0.432 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.+.++.-+.|.||+|+|||+|++++++.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34556667999999999999999999984
No 487
>PTZ00035 Rad51 protein; Provisional
Probab=96.25 E-value=0.025 Score=64.39 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=63.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcC---------CCEEEEeCchh------HHHH--hhhh--------------
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGSEF------VEVL--VGVG-------------- 502 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg---------~pfi~vs~sel------~~~~--vG~~-------------- 502 (938)
|+....-+.|+||||||||+|+..++.... ...++++..+- .... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 566667789999999999999999976433 34566665431 1100 0000
Q ss_pred -hHHHHHHH----HHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe
Q 002307 503 -SARIRDLF----KRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (938)
Q Consensus 503 -~~~vr~lF----~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA 577 (938)
...+..++ .......+.+|+||-|-++....-.+.+ ...++.+.+.+++..|..+....++.|+.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~---------~~~~r~~~l~~~~~~L~~la~~~~vavvv- 263 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRG---------ELAERQQHLGKFLRALQKLADEFNVAVVI- 263 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcc---------cHHHHHHHHHHHHHHHHHHHHHcCcEEEE-
Confidence 01111121 2223456789999999987643111000 11234455666666555444445666664
Q ss_pred cCC
Q 002307 578 TNR 580 (938)
Q Consensus 578 TN~ 580 (938)
||.
T Consensus 264 tNq 266 (337)
T PTZ00035 264 TNQ 266 (337)
T ss_pred ecc
Confidence 453
No 488
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.25 E-value=0.012 Score=61.51 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++..+.|.||+|+|||+|++++++..
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566779999999999999999999853
No 489
>PLN02200 adenylate kinase family protein
Probab=96.25 E-value=0.006 Score=65.81 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=33.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
+.+.|.-++|.||||+|||++|+.+|.+.|.+. +++.+++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHHH
Confidence 445667799999999999999999999998764 566666543
No 490
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.25 E-value=0.0034 Score=62.97 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.6
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
++|+||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987665 44443
No 491
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.24 E-value=0.0051 Score=69.39 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEe-CchhHH---H---HhhhhhHHHHHHHHHHHhCCCeEEEEc
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA-GSEFVE---V---LVGVGSARIRDLFKRAKVNKPSVIFID 524 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs-~sel~~---~---~vG~~~~~vr~lF~~Ar~~~P~ILfID 524 (938)
..+++++.|++|+|||+++++++... ...++.+. ..++.- . +.......+.+++..+.+..|+.|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34689999999999999999999863 12233221 112110 0 001112346788999999999999999
Q ss_pred Ccch
Q 002307 525 EIDA 528 (938)
Q Consensus 525 EIDa 528 (938)
|+-.
T Consensus 227 EiR~ 230 (319)
T PRK13894 227 EVRG 230 (319)
T ss_pred ccCC
Confidence 9853
No 492
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.24 E-value=0.011 Score=61.82 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++.-+.|.||+|+|||+|++++++.
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455566899999999999999999984
No 493
>PRK13695 putative NTPase; Provisional
Probab=96.24 E-value=0.035 Score=56.53 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.++|+|++|+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988765
No 494
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0085 Score=65.11 Aligned_cols=29 Identities=34% Similarity=0.614 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35566679999999999999999999853
No 495
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.24 E-value=0.035 Score=66.03 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=32.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh----cCCCEEEEeCch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE----AGVPFYQMAGSE 493 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e----lg~pfi~vs~se 493 (938)
|+.++..+||.||||||||+||..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 6777888999999999999999988543 267887777554
No 496
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.23 E-value=0.022 Score=60.65 Aligned_cols=126 Identities=26% Similarity=0.292 Sum_probs=73.7
Q ss_pred cCchhhhccCCCCCc--eEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc----hhHHH------------------
Q 002307 445 KNPELFDKMGIKPPH--GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS----EFVEV------------------ 497 (938)
Q Consensus 445 k~pe~~~~lG~~~p~--GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s----el~~~------------------ 497 (938)
.+.+.-+++|.-.|. =+++.|+.|||||.|.+.++--. +....+++.. +|...
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 344555566654444 48899999999999999997632 3444443321 11110
Q ss_pred -----------HhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC
Q 002307 498 -----------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 566 (938)
Q Consensus 498 -----------~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~ 566 (938)
-.......+..+.+.-+.+...|++||-+..+.... ....+++++..+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------------------~~~~vl~fm~~~r~l 154 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------------------SEDAVLNFMTFLRKL 154 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------------------cHHHHHHHHHHHHHH
Confidence 011122234445555556667799999999876431 123455566665555
Q ss_pred cCCCeEEEEEecCCCCcCCccccC
Q 002307 567 DTGKGVIFLAATNRRDLLDPALLR 590 (938)
Q Consensus 567 ~~~~~ViVIAATN~pd~LDpALlR 590 (938)
.....++++ |-+|+.++++.+.
T Consensus 155 ~d~gKvIil--Tvhp~~l~e~~~~ 176 (235)
T COG2874 155 SDLGKVIIL--TVHPSALDEDVLT 176 (235)
T ss_pred HhCCCEEEE--EeChhhcCHHHHH
Confidence 555555555 4457788877765
No 497
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.0077 Score=65.15 Aligned_cols=29 Identities=38% Similarity=0.552 Sum_probs=24.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+....-++|.|++|+|||+|++.+++-.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 44556679999999999999999998833
No 498
>PRK14530 adenylate kinase; Provisional
Probab=96.23 E-value=0.0045 Score=65.37 Aligned_cols=30 Identities=37% Similarity=0.546 Sum_probs=27.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.|+|.||||+|||++++.||+..+.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877644
No 499
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.22 E-value=0.03 Score=74.83 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=25.7
Q ss_pred ccCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 452 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 452 ~lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++++..+.|.||+|+|||+|++.+++-
T Consensus 405 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 434 (1466)
T PTZ00265 405 NFTLTEGKTYAFVGESGCGKSTILKLIERL 434 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344667778999999999999999999984
No 500
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.21 E-value=0.0068 Score=63.25 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.|++|+|||+|.+.+++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566679999999999999999999853
Done!