Query 002307
Match_columns 938
No_of_seqs 542 out of 3738
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:02:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.6E-78 5.5E-83 701.1 42.6 442 419-895 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 9.9E-78 3.4E-82 698.1 42.4 479 402-919 9-492 (499)
3 4b4t_J 26S protease regulatory 100.0 3.4E-50 1.2E-54 454.1 25.1 254 415-676 138-392 (405)
4 4b4t_I 26S protease regulatory 100.0 7.9E-49 2.7E-53 444.6 25.1 254 415-676 172-426 (437)
5 4b4t_H 26S protease regulatory 100.0 1.8E-48 6.3E-53 445.3 24.1 257 415-679 199-456 (467)
6 4b4t_M 26S protease regulatory 100.0 5.6E-48 1.9E-52 440.9 26.2 254 415-676 171-425 (434)
7 4b4t_L 26S protease subunit RP 100.0 8.8E-48 3E-52 439.6 25.9 254 415-676 171-425 (437)
8 4b4t_K 26S protease regulatory 100.0 5.4E-47 1.8E-51 432.4 25.3 253 415-675 162-416 (428)
9 2di4_A Zinc protease, cell div 100.0 9.1E-43 3.1E-47 368.4 16.0 198 675-900 2-206 (238)
10 3cf2_A TER ATPase, transitiona 100.0 2.2E-42 7.4E-47 419.5 9.1 233 416-656 468-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 6E-40 2E-44 398.2 22.0 250 417-677 196-463 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 1E-36 3.4E-41 322.4 27.1 253 417-677 4-256 (257)
13 3cf0_A Transitional endoplasmi 100.0 1.9E-36 6.4E-41 329.7 24.6 250 417-674 7-282 (301)
14 2x8a_A Nuclear valosin-contain 100.0 2.6E-36 8.9E-41 325.7 20.9 247 419-676 4-267 (274)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 4.1E-36 1.4E-40 316.1 19.8 257 420-683 1-259 (262)
16 3h4m_A Proteasome-activating n 100.0 1.8E-35 6.1E-40 316.3 24.7 252 417-676 9-261 (285)
17 1ixz_A ATP-dependent metallopr 100.0 7.9E-34 2.7E-38 299.8 27.3 248 415-670 6-253 (254)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.4E-34 8.3E-39 316.8 23.2 226 417-656 4-233 (322)
19 3eie_A Vacuolar protein sortin 100.0 2.2E-34 7.5E-39 316.1 19.6 229 415-657 8-239 (322)
20 1iy2_A ATP-dependent metallopr 100.0 7.8E-33 2.7E-37 296.9 26.8 258 404-670 20-277 (278)
21 2qp9_X Vacuolar protein sortin 100.0 3.9E-33 1.3E-37 311.1 22.0 228 415-656 41-271 (355)
22 3hu3_A Transitional endoplasmi 100.0 9.2E-33 3.2E-37 320.8 25.0 244 420-674 199-460 (489)
23 2r62_A Cell division protease 100.0 3.6E-35 1.2E-39 311.6 2.1 255 417-678 3-258 (268)
24 2zan_A Vacuolar protein sortin 100.0 7.6E-32 2.6E-36 309.3 21.3 228 415-656 124-355 (444)
25 3b9p_A CG5977-PA, isoform A; A 100.0 1.3E-30 4.3E-35 280.7 18.0 245 416-674 12-273 (297)
26 3d8b_A Fidgetin-like protein 1 100.0 5.8E-30 2E-34 285.3 23.2 246 416-675 75-336 (357)
27 1ypw_A Transitional endoplasmi 100.0 1.7E-32 6E-37 335.6 -2.3 234 416-657 468-702 (806)
28 3vfd_A Spastin; ATPase, microt 100.0 1.8E-29 6E-34 284.0 22.0 247 415-675 105-367 (389)
29 3t15_A Ribulose bisphosphate c 100.0 5.3E-29 1.8E-33 270.7 10.1 234 453-705 31-282 (293)
30 1ypw_A Transitional endoplasmi 99.9 8.6E-27 2.9E-31 285.3 24.1 247 418-675 197-461 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.6E-24 5.3E-29 249.2 -1.0 213 419-648 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 1.9E-21 6.6E-26 209.7 14.8 222 426-667 32-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.8 9E-21 3.1E-25 209.4 17.3 252 420-707 39-362 (368)
34 3pfi_A Holliday junction ATP-d 99.8 2E-19 7E-24 196.8 22.1 215 420-674 24-255 (338)
35 1ofh_A ATP-dependent HSL prote 99.8 3.3E-19 1.1E-23 191.2 15.1 238 425-674 15-300 (310)
36 1hqc_A RUVB; extended AAA-ATPa 99.8 7.6E-19 2.6E-23 190.4 17.0 218 420-673 7-238 (324)
37 1d2n_A N-ethylmaleimide-sensit 99.8 1.2E-18 4E-23 185.7 15.6 222 424-673 32-264 (272)
38 1g41_A Heat shock protein HSLU 99.8 2.4E-19 8.2E-24 205.5 6.0 170 425-614 15-190 (444)
39 3m6a_A ATP-dependent protease 99.8 1.4E-18 4.8E-23 204.2 12.5 228 421-677 77-345 (543)
40 2z4s_A Chromosomal replication 99.7 1.6E-17 5.6E-22 190.4 19.4 222 420-674 100-333 (440)
41 3hws_A ATP-dependent CLP prote 99.7 1.1E-17 3.7E-22 186.1 15.8 221 427-657 17-326 (363)
42 2v1u_A Cell division control p 99.7 3.3E-17 1.1E-21 180.2 19.2 225 422-674 16-277 (387)
43 2chg_A Replication factor C sm 99.7 2.3E-16 7.8E-21 158.6 20.7 201 420-671 12-224 (226)
44 1l8q_A Chromosomal replication 99.7 8.8E-17 3E-21 175.5 18.2 197 420-652 6-214 (324)
45 3pvs_A Replication-associated 99.7 5.5E-17 1.9E-21 186.6 15.0 205 421-674 22-245 (447)
46 3bos_A Putative DNA replicatio 99.7 1.7E-16 5.9E-21 162.8 16.5 206 420-671 23-241 (242)
47 2qby_B CDC6 homolog 3, cell di 99.7 3.9E-16 1.3E-20 172.5 19.9 212 424-674 19-271 (384)
48 1g8p_A Magnesium-chelatase 38 99.7 7.8E-16 2.7E-20 168.2 21.3 223 418-676 17-325 (350)
49 3u61_B DNA polymerase accessor 99.7 2.4E-16 8.3E-21 171.6 16.9 202 419-672 20-236 (324)
50 1sxj_A Activator 1 95 kDa subu 99.7 2.3E-16 7.8E-21 184.1 17.0 226 417-673 31-274 (516)
51 1njg_A DNA polymerase III subu 99.7 9.8E-16 3.3E-20 155.4 19.4 202 420-670 18-248 (250)
52 2qby_A CDC6 homolog 1, cell di 99.7 1.3E-15 4.6E-20 167.0 21.1 224 421-674 16-273 (386)
53 1in4_A RUVB, holliday junction 99.7 3.1E-15 1.1E-19 165.0 22.9 217 422-675 22-252 (334)
54 2r44_A Uncharacterized protein 99.7 3.6E-16 1.2E-20 171.0 15.3 217 423-676 25-300 (331)
55 1um8_A ATP-dependent CLP prote 99.7 3E-16 1E-20 175.1 13.5 239 425-673 21-365 (376)
56 1jbk_A CLPB protein; beta barr 99.7 1.5E-16 5E-21 156.4 8.6 159 421-612 18-194 (195)
57 4fcw_A Chaperone protein CLPB; 99.7 6.3E-16 2.2E-20 166.5 14.3 203 425-654 17-279 (311)
58 1r6b_X CLPA protein; AAA+, N-t 99.6 9.7E-16 3.3E-20 186.1 16.3 222 422-675 183-435 (758)
59 1sxj_D Activator 1 41 kDa subu 99.6 2.1E-15 7.2E-20 164.8 16.3 208 418-671 30-261 (353)
60 1fnn_A CDC6P, cell division co 99.6 5.9E-15 2E-19 162.9 19.3 220 422-674 14-275 (389)
61 3te6_A Regulatory protein SIR3 99.6 2.5E-15 8.5E-20 165.7 13.1 160 427-619 22-214 (318)
62 3pxg_A Negative regulator of g 99.6 6.3E-15 2.2E-19 170.1 16.5 205 421-673 176-406 (468)
63 2chq_A Replication factor C sm 99.6 3.8E-15 1.3E-19 160.0 13.3 202 418-670 10-223 (319)
64 3pxi_A Negative regulator of g 99.6 4.8E-15 1.7E-19 180.3 15.9 199 424-653 490-724 (758)
65 1qvr_A CLPB protein; coiled co 99.6 8E-15 2.7E-19 180.8 17.4 203 421-656 166-395 (854)
66 1jr3_A DNA polymerase III subu 99.6 2.7E-14 9.3E-19 157.1 19.9 202 420-670 11-241 (373)
67 3pxi_A Negative regulator of g 99.6 7.4E-15 2.5E-19 178.6 16.1 189 421-657 176-389 (758)
68 1sxj_B Activator 1 37 kDa subu 99.6 2.3E-14 7.7E-19 154.2 17.9 201 420-671 16-229 (323)
69 1r6b_X CLPA protein; AAA+, N-t 99.6 7.8E-15 2.7E-19 178.2 14.5 196 425-653 458-715 (758)
70 1iqp_A RFCS; clamp loader, ext 99.6 4.8E-14 1.6E-18 151.9 17.7 202 419-671 19-232 (327)
71 2bjv_A PSP operon transcriptio 99.6 3.6E-14 1.2E-18 150.3 16.3 207 422-666 3-250 (265)
72 2p65_A Hypothetical protein PF 99.6 5.9E-15 2E-19 145.2 8.9 152 421-604 18-187 (187)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.2E-14 4E-19 169.4 10.5 210 425-675 22-287 (500)
74 1ojl_A Transcriptional regulat 99.5 1.9E-14 6.3E-19 157.3 10.2 205 425-668 2-247 (304)
75 3f9v_A Minichromosome maintena 99.5 6E-15 2E-19 175.3 1.1 220 425-674 295-588 (595)
76 1sxj_E Activator 1 40 kDa subu 99.5 8.6E-13 2.9E-17 144.8 18.0 191 419-652 8-243 (354)
77 1qvr_A CLPB protein; coiled co 99.5 1.2E-13 3.9E-18 170.5 12.2 202 424-654 557-820 (854)
78 1sxj_C Activator 1 40 kDa subu 99.4 8E-13 2.7E-17 145.5 14.9 206 419-670 19-236 (340)
79 1w5s_A Origin recognition comp 99.4 3.1E-12 1E-16 142.4 19.7 227 423-674 20-294 (412)
80 3k1j_A LON protease, ATP-depen 99.3 1E-11 3.5E-16 147.6 16.5 101 570-672 251-374 (604)
81 3cmw_A Protein RECA, recombina 99.3 1.9E-12 6.5E-17 167.4 7.8 158 418-581 1013-1218(1706)
82 3co5_A Putative two-component 99.3 2.6E-12 8.7E-17 124.7 6.7 112 426-581 5-116 (143)
83 3n70_A Transport activator; si 99.3 5.8E-12 2E-16 122.4 8.4 86 426-531 2-90 (145)
84 1a5t_A Delta prime, HOLB; zinc 99.3 7.6E-11 2.6E-15 130.0 17.3 160 456-650 22-209 (334)
85 3kw6_A 26S protease regulatory 99.2 6.2E-11 2.1E-15 104.2 9.4 75 601-675 1-75 (78)
86 2krk_A 26S protease regulatory 99.1 9.5E-11 3.2E-15 105.5 9.1 77 600-676 8-84 (86)
87 3vlf_B 26S protease regulatory 99.1 1.2E-10 4.2E-15 105.1 9.0 79 604-682 2-80 (88)
88 2gno_A DNA polymerase III, gam 99.1 1.3E-09 4.6E-14 119.3 16.6 142 429-616 1-152 (305)
89 1ny5_A Transcriptional regulat 99.1 5E-10 1.7E-14 126.3 13.4 208 424-670 136-384 (387)
90 4akg_A Glutathione S-transfera 99.1 6.9E-10 2.4E-14 149.3 15.9 139 457-618 1266-1433(2695)
91 3ec2_A DNA replication protein 99.0 3.8E-10 1.3E-14 112.5 9.2 102 420-529 5-112 (180)
92 3aji_B S6C, proteasome (prosom 98.9 2.2E-09 7.6E-14 95.3 7.3 74 604-677 2-75 (83)
93 2fna_A Conserved hypothetical 98.8 9.2E-08 3.1E-12 103.5 19.4 187 421-648 9-252 (357)
94 2dzn_B 26S protease regulatory 98.8 2.2E-09 7.5E-14 95.4 4.6 73 606-678 1-73 (82)
95 2w58_A DNAI, primosome compone 98.8 3.9E-09 1.3E-13 106.8 7.0 103 421-530 21-128 (202)
96 3f8t_A Predicted ATPase involv 98.8 2.8E-08 9.6E-13 114.4 13.6 216 427-675 215-485 (506)
97 3dzd_A Transcriptional regulat 98.8 2.6E-08 8.9E-13 111.7 12.8 193 425-653 129-361 (368)
98 2qen_A Walker-type ATPase; unk 98.8 5.7E-07 2E-11 97.1 22.5 191 421-648 8-248 (350)
99 2kjq_A DNAA-related protein; s 98.6 2.3E-08 8E-13 98.1 5.9 59 457-530 35-96 (149)
100 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.1E-08 3.7E-13 113.0 2.1 122 454-588 119-242 (331)
101 2qgz_A Helicase loader, putati 98.6 1.2E-07 4E-12 103.8 9.8 102 421-530 120-227 (308)
102 2r2a_A Uncharacterized protein 98.4 1E-07 3.6E-12 98.2 4.9 130 459-608 6-158 (199)
103 1svm_A Large T antigen; AAA+ f 98.4 1.8E-07 6.2E-12 105.4 6.4 120 453-602 164-284 (377)
104 4akg_A Glutathione S-transfera 98.4 2.2E-06 7.5E-11 116.0 16.0 170 458-653 645-840 (2695)
105 3cmu_A Protein RECA, recombina 98.3 1.8E-06 6E-11 113.7 10.9 119 454-580 1423-1562(2050)
106 2c9o_A RUVB-like 1; hexameric 98.0 1.1E-05 3.7E-10 92.7 10.6 129 518-674 296-438 (456)
107 3vkg_A Dynein heavy chain, cyt 98.0 1.2E-05 4.2E-10 109.7 10.9 139 458-618 1304-1471(3245)
108 1tue_A Replication protein E1; 98.0 3.7E-06 1.3E-10 87.4 4.3 33 456-488 56-88 (212)
109 1jr3_D DNA polymerase III, del 97.9 9.5E-05 3.3E-09 81.0 14.8 176 457-673 17-209 (343)
110 1ye8_A Protein THEP1, hypothet 97.9 3.8E-05 1.3E-09 77.4 9.9 28 460-487 2-29 (178)
111 3qf4_B Uncharacterized ABC tra 97.8 7.7E-06 2.6E-10 97.2 4.0 30 453-482 376-405 (598)
112 2cvh_A DNA repair and recombin 97.8 3.5E-05 1.2E-09 78.0 7.7 40 454-493 16-55 (220)
113 3b5x_A Lipid A export ATP-bind 97.7 7.9E-05 2.7E-09 88.2 11.2 47 275-321 257-303 (582)
114 4f4c_A Multidrug resistance pr 97.7 2.7E-05 9.2E-10 100.5 7.6 30 453-482 439-468 (1321)
115 4a82_A Cystic fibrosis transme 97.7 1.8E-05 6.1E-10 93.7 5.0 45 274-318 252-296 (578)
116 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00021 7.1E-09 72.5 12.2 39 454-492 19-60 (235)
117 2ehv_A Hypothetical protein PH 97.7 0.00023 7.9E-09 73.3 11.7 38 454-491 26-67 (251)
118 1z6t_A APAF-1, apoptotic prote 97.7 0.0013 4.6E-08 76.9 19.6 174 423-646 122-328 (591)
119 1n0w_A DNA repair protein RAD5 97.6 0.00011 3.9E-09 75.4 9.0 78 454-531 20-133 (243)
120 3vkg_A Dynein heavy chain, cyt 97.6 0.00024 8.1E-09 97.4 13.4 132 459-612 605-749 (3245)
121 3qf4_A ABC transporter, ATP-bi 97.6 5.3E-05 1.8E-09 89.9 6.2 30 453-482 364-393 (587)
122 3b60_A Lipid A export ATP-bind 97.6 6.1E-05 2.1E-09 89.2 6.4 29 453-481 364-392 (582)
123 2zr9_A Protein RECA, recombina 97.5 0.00012 4E-09 81.6 6.7 78 454-531 57-153 (349)
124 2z43_A DNA repair and recombin 97.4 0.00027 9.4E-09 77.4 9.2 79 454-532 103-218 (324)
125 3sfz_A APAF-1, apoptotic pepti 97.4 0.0037 1.3E-07 78.6 20.6 176 422-645 121-327 (1249)
126 1u0j_A DNA replication protein 97.4 0.00017 5.7E-09 77.7 6.9 27 458-484 104-130 (267)
127 3hr8_A Protein RECA; alpha and 97.4 0.00024 8.4E-09 79.4 8.3 78 454-531 57-153 (356)
128 1xp8_A RECA protein, recombina 97.4 0.0003 1E-08 78.9 8.9 78 454-531 70-166 (366)
129 4a74_A DNA repair and recombin 97.4 0.00046 1.6E-08 70.1 9.2 29 454-482 21-49 (231)
130 1qhx_A CPT, protein (chloramph 97.4 0.00041 1.4E-08 68.1 8.5 40 458-497 3-42 (178)
131 3cmu_A Protein RECA, recombina 97.3 0.00034 1.2E-08 92.6 9.7 79 454-532 1077-1174(2050)
132 1u94_A RECA protein, recombina 97.3 0.0005 1.7E-08 76.8 9.1 78 454-531 59-155 (356)
133 1v5w_A DMC1, meiotic recombina 97.3 0.0005 1.7E-08 76.1 8.6 79 454-532 118-234 (343)
134 2yl4_A ATP-binding cassette SU 97.2 0.00029 1E-08 83.6 6.2 29 453-481 365-393 (595)
135 4gp7_A Metallophosphoesterase; 97.2 0.00046 1.6E-08 68.4 6.3 22 456-477 7-28 (171)
136 2zts_A Putative uncharacterize 97.1 0.00098 3.4E-08 68.4 8.6 39 454-492 26-68 (251)
137 2dr3_A UPF0273 protein PH0284; 97.1 0.0023 7.9E-08 65.6 11.3 39 454-492 19-60 (247)
138 3lda_A DNA repair protein RAD5 97.1 0.00066 2.2E-08 77.1 7.3 78 454-531 174-287 (400)
139 2a5y_B CED-4; apoptosis; HET: 97.1 0.0065 2.2E-07 71.1 15.8 171 428-644 131-335 (549)
140 1pzn_A RAD51, DNA repair and r 97.0 0.00096 3.3E-08 74.1 8.2 41 453-493 126-175 (349)
141 3upu_A ATP-dependent DNA helic 97.0 0.002 7E-08 73.7 11.0 64 415-491 14-82 (459)
142 2i1q_A DNA repair and recombin 97.0 0.0012 4.2E-08 71.8 8.5 28 454-481 94-121 (322)
143 3vaa_A Shikimate kinase, SK; s 97.0 0.00043 1.5E-08 69.9 4.2 35 455-489 22-56 (199)
144 1gvn_B Zeta; postsegregational 97.0 0.0017 5.7E-08 70.1 9.0 60 431-494 10-69 (287)
145 1nlf_A Regulatory protein REPA 96.9 0.00099 3.4E-08 70.9 7.0 29 454-482 26-54 (279)
146 3trf_A Shikimate kinase, SK; a 96.9 0.00047 1.6E-08 68.2 4.1 32 458-489 5-36 (185)
147 4f4c_A Multidrug resistance pr 96.9 0.00039 1.3E-08 89.7 4.0 28 453-480 1100-1127(1321)
148 1cr0_A DNA primase/helicase; R 96.9 0.0012 4.2E-08 70.7 7.2 39 453-491 30-72 (296)
149 3jvv_A Twitching mobility prot 96.9 0.00095 3.2E-08 74.6 6.3 69 459-527 124-206 (356)
150 2rhm_A Putative kinase; P-loop 96.9 0.00076 2.6E-08 66.8 4.9 34 455-488 2-35 (193)
151 2p5t_B PEZT; postsegregational 96.8 0.0019 6.5E-08 68.0 8.0 40 455-494 29-68 (253)
152 1zp6_A Hypothetical protein AT 96.8 0.00079 2.7E-08 66.8 4.7 40 455-494 6-45 (191)
153 3g5u_A MCG1178, multidrug resi 96.8 0.00032 1.1E-08 90.3 2.2 30 453-482 411-440 (1284)
154 2iut_A DNA translocase FTSK; n 96.8 0.0076 2.6E-07 71.2 13.5 74 519-613 345-420 (574)
155 1g41_A Heat shock protein HSLU 96.8 0.0068 2.3E-07 69.7 12.8 152 505-671 240-431 (444)
156 3io5_A Recombination and repai 96.8 0.0014 4.9E-08 72.3 6.8 77 454-531 25-125 (333)
157 2r6a_A DNAB helicase, replicat 96.7 0.0022 7.5E-08 73.5 8.1 38 454-491 199-240 (454)
158 3kb2_A SPBC2 prophage-derived 96.7 0.0011 3.8E-08 64.1 4.2 31 460-490 3-33 (173)
159 2ius_A DNA translocase FTSK; n 96.7 0.0093 3.2E-07 69.7 12.7 76 517-613 296-374 (512)
160 3iij_A Coilin-interacting nucl 96.6 0.0012 4E-08 65.2 4.2 33 457-489 10-42 (180)
161 1y63_A LMAJ004144AAA protein; 96.6 0.0012 4.1E-08 65.9 3.9 33 457-489 9-42 (184)
162 3gfo_A Cobalt import ATP-bindi 96.6 0.002 7E-08 69.4 5.9 27 455-481 31-57 (275)
163 1kag_A SKI, shikimate kinase I 96.6 0.0014 4.8E-08 63.9 4.3 31 458-488 4-34 (173)
164 2r8r_A Sensor protein; KDPD, P 96.6 0.022 7.6E-07 59.9 13.5 33 459-491 7-42 (228)
165 2orw_A Thymidine kinase; TMTK, 96.5 0.0015 5E-08 66.1 4.2 31 459-489 4-37 (184)
166 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0035 1.2E-07 66.3 7.4 38 458-495 4-44 (260)
167 2iyv_A Shikimate kinase, SK; t 96.5 0.0014 4.7E-08 64.9 3.8 29 460-488 4-32 (184)
168 2ixe_A Antigen peptide transpo 96.5 0.0041 1.4E-07 66.7 7.8 28 454-481 41-68 (271)
169 1zuh_A Shikimate kinase; alpha 96.5 0.0015 5.1E-08 63.7 3.9 31 459-489 8-38 (168)
170 1v43_A Sugar-binding transport 96.5 0.0036 1.2E-07 70.4 7.5 26 455-480 34-59 (372)
171 1via_A Shikimate kinase; struc 96.5 0.0016 5.3E-08 64.2 4.0 29 460-488 6-34 (175)
172 2q6t_A DNAB replication FORK h 96.5 0.0041 1.4E-07 71.0 8.1 39 454-492 196-238 (444)
173 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0042 1.4E-07 69.5 7.8 27 455-481 27-53 (359)
174 4g1u_C Hemin import ATP-bindin 96.5 0.0034 1.1E-07 67.3 6.7 28 454-481 33-60 (266)
175 1vma_A Cell division protein F 96.5 0.01 3.5E-07 64.9 10.7 74 455-528 101-197 (306)
176 2cdn_A Adenylate kinase; phosp 96.4 0.0019 6.4E-08 65.0 4.3 33 457-489 19-51 (201)
177 2eyu_A Twitching motility prot 96.4 0.0013 4.5E-08 70.2 3.2 72 456-527 23-108 (261)
178 3tif_A Uncharacterized ABC tra 96.4 0.0019 6.5E-08 67.8 4.4 26 455-480 28-53 (235)
179 3rlf_A Maltose/maltodextrin im 96.4 0.0022 7.5E-08 72.4 5.1 27 455-481 26-52 (381)
180 1tev_A UMP-CMP kinase; ploop, 96.4 0.0017 5.7E-08 64.1 3.6 36 458-495 3-38 (196)
181 2ff7_A Alpha-hemolysin translo 96.4 0.0038 1.3E-07 66.0 6.5 27 455-481 32-58 (247)
182 1qf9_A UMP/CMP kinase, protein 96.4 0.0025 8.5E-08 62.7 4.7 33 457-489 5-37 (194)
183 3lw7_A Adenylate kinase relate 96.4 0.0016 5.5E-08 62.6 3.3 29 460-489 3-31 (179)
184 3nh6_A ATP-binding cassette SU 96.4 0.0019 6.5E-08 70.8 4.1 29 453-481 75-103 (306)
185 2yyz_A Sugar ABC transporter, 96.3 0.0026 8.8E-08 71.3 5.2 27 455-481 26-52 (359)
186 2c95_A Adenylate kinase 1; tra 96.3 0.002 6.8E-08 63.9 3.8 33 457-489 8-40 (196)
187 3dm5_A SRP54, signal recogniti 96.3 0.031 1.1E-06 64.2 14.1 72 457-528 99-193 (443)
188 3tui_C Methionine import ATP-b 96.3 0.0036 1.2E-07 70.3 6.2 27 454-480 50-76 (366)
189 1g6h_A High-affinity branched- 96.3 0.0068 2.3E-07 64.3 8.1 27 455-481 30-56 (257)
190 2ze6_A Isopentenyl transferase 96.3 0.0023 7.8E-08 67.7 4.3 32 460-491 3-34 (253)
191 3bh0_A DNAB-like replicative h 96.3 0.0073 2.5E-07 65.9 8.4 38 454-491 64-104 (315)
192 3g5u_A MCG1178, multidrug resi 96.3 0.0013 4.6E-08 84.6 2.8 27 454-480 1055-1081(1284)
193 3e1s_A Exodeoxyribonuclease V, 96.3 0.0067 2.3E-07 71.8 8.5 33 459-491 205-240 (574)
194 3t61_A Gluconokinase; PSI-biol 96.3 0.0027 9.2E-08 63.9 4.4 31 458-488 18-48 (202)
195 2ewv_A Twitching motility prot 96.3 0.0025 8.4E-08 71.5 4.5 74 454-527 132-219 (372)
196 1aky_A Adenylate kinase; ATP:A 96.3 0.0029 9.9E-08 64.6 4.7 33 457-489 3-35 (220)
197 1z47_A CYSA, putative ABC-tran 96.3 0.0011 3.7E-08 74.1 1.6 27 455-481 38-64 (355)
198 2pez_A Bifunctional 3'-phospho 96.3 0.0032 1.1E-07 62.1 4.8 36 457-492 4-42 (179)
199 3crm_A TRNA delta(2)-isopenten 96.3 0.0025 8.6E-08 70.3 4.4 35 458-492 5-39 (323)
200 2pcj_A ABC transporter, lipopr 96.3 0.0049 1.7E-07 64.1 6.4 27 455-481 27-53 (224)
201 3cm0_A Adenylate kinase; ATP-b 96.2 0.0023 7.8E-08 63.2 3.6 30 459-488 5-34 (186)
202 1vpl_A ABC transporter, ATP-bi 96.2 0.0017 5.8E-08 69.2 2.8 28 454-481 37-64 (256)
203 1ly1_A Polynucleotide kinase; 96.2 0.0022 7.4E-08 62.5 3.3 30 458-487 2-32 (181)
204 1zd8_A GTP:AMP phosphotransfer 96.2 0.0022 7.7E-08 65.9 3.6 33 457-489 6-38 (227)
205 1e6c_A Shikimate kinase; phosp 96.2 0.0028 9.6E-08 61.6 4.1 29 460-488 4-32 (173)
206 2vli_A Antibiotic resistance p 96.2 0.0023 8E-08 62.8 3.5 30 458-487 5-34 (183)
207 2fz4_A DNA repair protein RAD2 96.2 0.019 6.6E-07 59.8 10.7 38 460-497 110-148 (237)
208 3d31_A Sulfate/molybdate ABC t 96.2 0.0038 1.3E-07 69.6 5.4 27 455-481 23-49 (348)
209 4eun_A Thermoresistant glucoki 96.2 0.0034 1.2E-07 63.4 4.6 37 456-494 27-63 (200)
210 2bwj_A Adenylate kinase 5; pho 96.2 0.0024 8.4E-08 63.4 3.5 32 458-489 12-43 (199)
211 3dl0_A Adenylate kinase; phosp 96.2 0.0026 8.9E-08 64.6 3.7 30 460-489 2-31 (216)
212 2it1_A 362AA long hypothetical 96.2 0.0043 1.5E-07 69.5 5.7 27 455-481 26-52 (362)
213 1knq_A Gluconate kinase; ALFA/ 96.1 0.0036 1.2E-07 61.3 4.4 31 458-488 8-38 (175)
214 2olj_A Amino acid ABC transpor 96.1 0.011 3.7E-07 63.3 8.5 29 454-482 46-74 (263)
215 3fb4_A Adenylate kinase; psych 96.1 0.0027 9.4E-08 64.3 3.7 30 460-489 2-31 (216)
216 3be4_A Adenylate kinase; malar 96.1 0.003 1E-07 64.6 4.0 31 459-489 6-36 (217)
217 1kht_A Adenylate kinase; phosp 96.1 0.003 1E-07 62.1 3.8 25 459-483 4-28 (192)
218 2cbz_A Multidrug resistance-as 96.1 0.0052 1.8E-07 64.5 5.6 29 454-482 27-55 (237)
219 2pt5_A Shikimate kinase, SK; a 96.1 0.0031 1.1E-07 61.2 3.6 29 460-488 2-30 (168)
220 1ukz_A Uridylate kinase; trans 96.1 0.0032 1.1E-07 63.2 3.9 32 458-489 15-46 (203)
221 3tlx_A Adenylate kinase 2; str 96.0 0.0033 1.1E-07 65.9 3.9 33 457-489 28-60 (243)
222 2b8t_A Thymidine kinase; deoxy 96.0 0.0045 1.5E-07 64.8 4.9 70 459-529 13-101 (223)
223 3kl4_A SRP54, signal recogniti 96.0 0.021 7E-07 65.5 10.7 72 457-528 96-190 (433)
224 1tf7_A KAIC; homohexamer, hexa 96.0 0.021 7.3E-07 66.5 11.0 76 454-529 277-383 (525)
225 1ak2_A Adenylate kinase isoenz 96.0 0.0046 1.6E-07 64.0 4.8 32 458-489 16-47 (233)
226 2nq2_C Hypothetical ABC transp 96.0 0.0056 1.9E-07 65.0 5.5 28 455-482 28-55 (253)
227 3cmw_A Protein RECA, recombina 96.0 0.0063 2.2E-07 79.8 6.9 116 457-577 1430-1564(1706)
228 1g5t_A COB(I)alamin adenosyltr 96.0 0.029 9.9E-07 57.7 10.3 72 459-530 29-133 (196)
229 1zak_A Adenylate kinase; ATP:A 95.9 0.0036 1.2E-07 64.0 3.5 37 457-495 4-40 (222)
230 3umf_A Adenylate kinase; rossm 95.9 0.0043 1.5E-07 64.7 4.0 40 455-496 26-65 (217)
231 3uie_A Adenylyl-sulfate kinase 95.9 0.0066 2.3E-07 61.2 5.1 37 456-492 23-62 (200)
232 3thx_B DNA mismatch repair pro 95.9 0.019 6.5E-07 71.5 10.1 26 455-480 670-695 (918)
233 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0017 5.9E-08 71.6 0.8 72 457-528 170-251 (330)
234 3gd7_A Fusion complex of cysti 95.8 0.004 1.4E-07 70.4 3.5 27 454-480 43-69 (390)
235 1nks_A Adenylate kinase; therm 95.8 0.006 2.1E-07 59.9 4.3 34 460-493 3-39 (194)
236 1cke_A CK, MSSA, protein (cyti 95.8 0.0062 2.1E-07 62.0 4.4 30 459-488 6-35 (227)
237 2pbr_A DTMP kinase, thymidylat 95.8 0.007 2.4E-07 59.6 4.7 31 460-490 2-35 (195)
238 2v54_A DTMP kinase, thymidylat 95.8 0.0072 2.5E-07 60.3 4.7 34 458-491 4-38 (204)
239 1jjv_A Dephospho-COA kinase; P 95.8 0.008 2.7E-07 60.5 5.1 28 460-488 4-31 (206)
240 1tf7_A KAIC; homohexamer, hexa 95.7 0.038 1.3E-06 64.4 11.5 42 452-493 32-78 (525)
241 2px0_A Flagellar biosynthesis 95.7 0.042 1.4E-06 59.6 10.7 67 457-525 104-190 (296)
242 2jaq_A Deoxyguanosine kinase; 95.7 0.0061 2.1E-07 60.6 3.8 29 460-488 2-30 (205)
243 1oxx_K GLCV, glucose, ABC tran 95.7 0.0053 1.8E-07 68.5 3.7 27 455-481 28-54 (353)
244 2grj_A Dephospho-COA kinase; T 95.7 0.012 4.1E-07 60.0 5.9 39 460-500 14-52 (192)
245 1e4v_A Adenylate kinase; trans 95.7 0.0068 2.3E-07 61.7 4.2 30 460-489 2-31 (214)
246 2bbw_A Adenylate kinase 4, AK4 95.6 0.0075 2.6E-07 62.8 4.5 31 458-488 27-57 (246)
247 2if2_A Dephospho-COA kinase; a 95.6 0.0052 1.8E-07 61.7 3.1 29 460-489 3-31 (204)
248 3sr0_A Adenylate kinase; phosp 95.6 0.0072 2.5E-07 62.3 4.1 34 460-495 2-35 (206)
249 1ex7_A Guanylate kinase; subst 95.5 0.012 4.2E-07 59.8 5.5 24 459-482 2-25 (186)
250 2z0h_A DTMP kinase, thymidylat 95.5 0.0095 3.3E-07 59.0 4.7 31 461-491 3-36 (197)
251 1q57_A DNA primase/helicase; d 95.5 0.019 6.5E-07 66.4 7.7 39 454-492 238-280 (503)
252 1g29_1 MALK, maltose transport 95.5 0.007 2.4E-07 68.0 3.8 27 455-481 26-52 (372)
253 3ake_A Cytidylate kinase; CMP 95.4 0.01 3.4E-07 59.4 4.4 30 460-489 4-33 (208)
254 2xb4_A Adenylate kinase; ATP-b 95.4 0.0088 3E-07 61.6 4.0 29 460-488 2-30 (223)
255 1uf9_A TT1252 protein; P-loop, 95.4 0.011 3.8E-07 58.8 4.5 36 458-496 8-43 (203)
256 3nwj_A ATSK2; P loop, shikimat 95.3 0.007 2.4E-07 64.3 3.0 32 458-489 48-79 (250)
257 1uj2_A Uridine-cytidine kinase 95.2 0.015 5.1E-07 60.9 5.1 39 457-495 21-67 (252)
258 2wwf_A Thymidilate kinase, put 95.2 0.0059 2E-07 61.4 1.9 29 457-485 9-37 (212)
259 2qor_A Guanylate kinase; phosp 95.2 0.016 5.6E-07 58.5 5.2 29 455-483 9-37 (204)
260 2plr_A DTMP kinase, probable t 95.2 0.012 4.1E-07 58.8 4.0 32 458-489 4-37 (213)
261 3thx_A DNA mismatch repair pro 95.2 0.038 1.3E-06 69.0 9.2 22 459-480 663-684 (934)
262 4a1f_A DNAB helicase, replicat 95.1 0.083 2.8E-06 58.6 10.9 38 454-491 42-82 (338)
263 3llm_A ATP-dependent RNA helic 95.1 0.1 3.4E-06 53.9 11.0 22 458-479 76-97 (235)
264 2j41_A Guanylate kinase; GMP, 95.1 0.012 4.2E-07 58.7 3.9 27 456-482 4-30 (207)
265 3b6e_A Interferon-induced heli 95.1 0.12 4E-06 51.5 11.1 23 459-481 49-71 (216)
266 3r20_A Cytidylate kinase; stru 95.1 0.014 4.9E-07 61.4 4.5 31 458-488 9-39 (233)
267 3c8u_A Fructokinase; YP_612366 95.0 0.019 6.5E-07 58.2 5.1 28 456-483 20-47 (208)
268 2yvu_A Probable adenylyl-sulfa 95.0 0.021 7.2E-07 56.5 5.3 36 456-491 11-49 (186)
269 3bgw_A DNAB-like replicative h 95.0 0.021 7.2E-07 65.5 5.9 38 454-491 193-233 (444)
270 3tau_A Guanylate kinase, GMP k 95.0 0.018 6E-07 58.7 4.7 27 457-483 7-33 (208)
271 2qt1_A Nicotinamide riboside k 95.0 0.01 3.5E-07 59.8 2.9 33 456-488 19-52 (207)
272 1nn5_A Similar to deoxythymidy 95.0 0.0071 2.4E-07 60.8 1.7 27 457-483 8-34 (215)
273 1w36_D RECD, exodeoxyribonucle 95.0 0.066 2.3E-06 63.7 10.2 23 459-481 165-187 (608)
274 4e22_A Cytidylate kinase; P-lo 95.0 0.018 6.1E-07 60.6 4.8 31 458-488 27-57 (252)
275 2gxq_A Heat resistant RNA depe 94.9 0.14 4.7E-06 50.9 11.0 18 459-476 39-56 (207)
276 1m7g_A Adenylylsulfate kinase; 94.9 0.016 5.6E-07 58.8 4.2 38 456-493 23-64 (211)
277 1kgd_A CASK, peripheral plasma 94.9 0.016 5.6E-07 57.5 4.0 26 458-483 5-30 (180)
278 1vht_A Dephospho-COA kinase; s 94.8 0.02 6.7E-07 58.2 4.5 30 458-488 4-33 (218)
279 1q3t_A Cytidylate kinase; nucl 94.8 0.021 7.2E-07 59.1 4.8 33 456-488 14-46 (236)
280 3a8t_A Adenylate isopentenyltr 94.8 0.014 4.8E-07 64.8 3.5 35 458-492 40-74 (339)
281 2yhs_A FTSY, cell division pro 94.8 0.29 1E-05 57.0 14.5 29 454-482 289-317 (503)
282 4aby_A DNA repair protein RECN 94.7 0.049 1.7E-06 60.8 7.9 27 455-482 58-84 (415)
283 3tr0_A Guanylate kinase, GMP k 94.7 0.018 6.2E-07 57.4 3.9 26 457-482 6-31 (205)
284 2h92_A Cytidylate kinase; ross 94.7 0.022 7.4E-07 57.8 4.4 31 459-489 4-34 (219)
285 2ga8_A Hypothetical 39.9 kDa p 94.7 0.016 5.3E-07 64.9 3.6 53 428-488 2-54 (359)
286 3ozx_A RNAse L inhibitor; ATP 94.6 0.034 1.2E-06 65.4 6.4 27 456-482 292-318 (538)
287 1rz3_A Hypothetical protein rb 94.6 0.065 2.2E-06 54.1 7.7 37 456-492 20-59 (201)
288 3asz_A Uridine kinase; cytidin 94.6 0.017 5.9E-07 58.1 3.4 31 457-487 5-37 (211)
289 3foz_A TRNA delta(2)-isopenten 94.5 0.021 7.3E-07 62.7 4.1 37 457-493 9-45 (316)
290 1w4r_A Thymidine kinase; type 94.4 0.051 1.7E-06 55.9 6.5 69 458-529 20-103 (195)
291 3zvl_A Bifunctional polynucleo 94.4 0.036 1.2E-06 62.9 5.9 33 456-488 256-288 (416)
292 1ltq_A Polynucleotide kinase; 94.4 0.02 6.9E-07 61.0 3.6 29 459-487 3-32 (301)
293 1ls1_A Signal recognition part 94.3 0.3 1E-05 52.8 12.6 72 457-528 97-191 (295)
294 2bdt_A BH3686; alpha-beta prot 94.3 0.027 9.4E-07 55.7 4.1 33 460-493 4-36 (189)
295 2f6r_A COA synthase, bifunctio 94.3 0.021 7E-07 61.3 3.4 36 458-496 75-110 (281)
296 2axn_A 6-phosphofructo-2-kinas 94.3 0.089 3E-06 61.5 8.9 42 458-499 35-79 (520)
297 1zu4_A FTSY; GTPase, signal re 94.2 0.11 3.9E-06 56.9 9.0 38 455-492 102-142 (320)
298 1vt4_I APAF-1 related killer D 94.2 0.094 3.2E-06 66.1 9.2 43 428-481 131-173 (1221)
299 1p9r_A General secretion pathw 94.2 0.091 3.1E-06 59.8 8.5 95 420-527 142-246 (418)
300 1lvg_A Guanylate kinase, GMP k 94.1 0.024 8.2E-07 57.4 3.3 26 457-482 3-28 (198)
301 1t6n_A Probable ATP-dependent 94.1 0.5 1.7E-05 47.5 13.1 58 422-481 14-74 (220)
302 1z6g_A Guanylate kinase; struc 94.1 0.027 9.1E-07 58.0 3.6 28 455-482 20-47 (218)
303 2oap_1 GSPE-2, type II secreti 94.1 0.019 6.5E-07 67.1 2.6 71 457-527 259-343 (511)
304 3a00_A Guanylate kinase, GMP k 94.0 0.028 9.7E-07 55.9 3.6 25 459-483 2-26 (186)
305 1htw_A HI0065; nucleotide-bind 94.0 0.032 1.1E-06 55.1 3.7 29 454-482 29-57 (158)
306 1wb9_A DNA mismatch repair pro 94.0 0.13 4.4E-06 63.3 9.8 24 458-481 607-630 (800)
307 3e70_C DPA, signal recognition 94.0 0.17 5.8E-06 55.7 9.9 27 456-482 127-153 (328)
308 3ozx_A RNAse L inhibitor; ATP 93.9 0.11 3.8E-06 61.0 8.9 33 450-482 14-49 (538)
309 3d3q_A TRNA delta(2)-isopenten 93.9 0.029 9.9E-07 62.3 3.7 33 459-491 8-40 (340)
310 1znw_A Guanylate kinase, GMP k 93.9 0.033 1.1E-06 56.4 3.8 29 455-483 17-45 (207)
311 1hv8_A Putative ATP-dependent 93.9 0.25 8.6E-06 52.9 10.9 33 459-491 45-82 (367)
312 1x6v_B Bifunctional 3'-phospho 93.8 0.061 2.1E-06 64.4 6.4 37 457-493 51-90 (630)
313 3exa_A TRNA delta(2)-isopenten 93.8 0.034 1.2E-06 61.2 3.9 34 459-492 4-37 (322)
314 1qde_A EIF4A, translation init 93.8 0.27 9.2E-06 49.6 10.3 54 420-475 12-68 (224)
315 3j16_B RLI1P; ribosome recycli 93.7 0.14 4.8E-06 61.0 9.3 27 456-482 101-127 (608)
316 2qmh_A HPR kinase/phosphorylas 93.7 0.027 9.4E-07 58.2 2.8 32 458-490 34-65 (205)
317 3fdi_A Uncharacterized protein 93.7 0.039 1.3E-06 56.3 4.0 29 460-488 8-36 (201)
318 2xau_A PRE-mRNA-splicing facto 93.7 0.21 7.1E-06 61.2 10.9 24 458-481 109-132 (773)
319 3lnc_A Guanylate kinase, GMP k 93.7 0.032 1.1E-06 57.3 3.3 28 455-482 24-52 (231)
320 2gza_A Type IV secretion syste 93.7 0.05 1.7E-06 60.5 5.1 73 455-527 172-262 (361)
321 3bk7_A ABC transporter ATP-bin 93.6 0.092 3.1E-06 62.6 7.4 27 456-482 380-406 (607)
322 3j16_B RLI1P; ribosome recycli 93.6 0.065 2.2E-06 63.9 6.0 22 461-482 381-402 (608)
323 2v9p_A Replication protein E1; 93.5 0.042 1.4E-06 60.1 3.9 31 453-483 121-151 (305)
324 3b9q_A Chloroplast SRP recepto 93.4 0.089 3.1E-06 57.2 6.4 52 431-482 70-124 (302)
325 2jeo_A Uridine-cytidine kinase 93.4 0.043 1.5E-06 57.1 3.8 31 455-485 22-52 (245)
326 3ice_A Transcription terminati 93.4 0.35 1.2E-05 54.9 11.1 27 456-482 172-198 (422)
327 3iuy_A Probable ATP-dependent 93.3 0.38 1.3E-05 48.8 10.6 57 418-476 15-75 (228)
328 2iw3_A Elongation factor 3A; a 93.2 0.11 3.6E-06 65.2 7.3 26 455-480 458-483 (986)
329 1yqt_A RNAse L inhibitor; ATP- 93.2 0.1 3.5E-06 61.3 6.8 27 456-482 310-336 (538)
330 2ffh_A Protein (FFH); SRP54, s 93.1 0.4 1.4E-05 54.7 11.3 71 457-527 97-190 (425)
331 3eph_A TRNA isopentenyltransfe 93.1 0.048 1.6E-06 62.0 3.6 34 458-491 2-35 (409)
332 2j37_W Signal recognition part 93.0 0.24 8.2E-06 57.8 9.5 36 456-491 99-137 (504)
333 3bor_A Human initiation factor 93.0 0.27 9.3E-06 50.5 9.0 56 420-477 28-86 (237)
334 3ney_A 55 kDa erythrocyte memb 93.0 0.064 2.2E-06 55.0 4.1 27 457-483 18-44 (197)
335 2o8b_B DNA mismatch repair pro 92.9 0.22 7.5E-06 62.8 9.6 22 458-479 789-810 (1022)
336 1s96_A Guanylate kinase, GMP k 92.9 0.058 2E-06 55.9 3.7 29 455-483 13-41 (219)
337 1odf_A YGR205W, hypothetical 3 92.8 0.047 1.6E-06 59.1 3.0 28 456-483 29-56 (290)
338 2pl3_A Probable ATP-dependent 92.8 0.48 1.7E-05 48.3 10.6 19 458-476 62-80 (236)
339 2xxa_A Signal recognition part 92.8 0.31 1E-05 55.8 9.9 72 456-527 98-193 (433)
340 2v3c_C SRP54, signal recogniti 92.8 0.18 6.3E-06 57.6 8.0 36 457-492 98-136 (432)
341 2og2_A Putative signal recogni 92.7 0.13 4.3E-06 57.6 6.4 52 431-482 127-181 (359)
342 1xx6_A Thymidine kinase; NESG, 92.7 0.19 6.5E-06 51.1 7.2 70 458-529 8-93 (191)
343 1j8m_F SRP54, signal recogniti 92.6 0.16 5.6E-06 55.0 6.9 71 458-528 98-191 (297)
344 4b3f_X DNA-binding protein smu 92.6 0.17 5.8E-06 60.4 7.6 33 460-492 207-242 (646)
345 1gtv_A TMK, thymidylate kinase 92.4 0.037 1.3E-06 55.6 1.3 24 460-483 2-25 (214)
346 1c9k_A COBU, adenosylcobinamid 92.3 0.073 2.5E-06 54.0 3.5 32 461-493 2-33 (180)
347 1ewq_A DNA mismatch repair pro 92.3 0.2 6.9E-06 61.2 7.9 24 458-481 576-599 (765)
348 2z0m_A 337AA long hypothetical 92.2 0.44 1.5E-05 50.4 9.6 33 459-491 32-64 (337)
349 3p32_A Probable GTPase RV1496/ 92.1 0.62 2.1E-05 51.4 11.0 33 458-490 79-114 (355)
350 1sky_E F1-ATPase, F1-ATP synth 92.1 0.15 5.3E-06 58.9 6.2 25 458-482 151-175 (473)
351 1vec_A ATP-dependent RNA helic 92.0 0.99 3.4E-05 44.7 11.4 18 459-476 41-58 (206)
352 1bif_A 6-phosphofructo-2-kinas 92.0 0.31 1.1E-05 55.9 8.7 40 458-497 39-81 (469)
353 2ged_A SR-beta, signal recogni 92.0 0.14 4.9E-06 50.0 5.1 48 429-482 25-72 (193)
354 3gmt_A Adenylate kinase; ssgci 92.0 0.089 3E-06 55.3 3.7 30 460-489 10-39 (230)
355 1xti_A Probable ATP-dependent 92.0 1 3.5E-05 48.8 12.4 23 458-480 45-67 (391)
356 1a7j_A Phosphoribulokinase; tr 91.9 0.068 2.3E-06 57.7 2.8 37 459-495 6-45 (290)
357 4eaq_A DTMP kinase, thymidylat 91.8 0.1 3.5E-06 54.2 4.0 33 457-489 25-59 (229)
358 1s2m_A Putative ATP-dependent 91.8 0.4 1.4E-05 52.5 8.9 58 420-479 19-79 (400)
359 3hdt_A Putative kinase; struct 91.8 0.091 3.1E-06 54.8 3.6 30 459-488 15-44 (223)
360 1b0u_A Histidine permease; ABC 91.7 0.059 2E-06 57.4 2.1 29 455-483 29-57 (262)
361 1sq5_A Pantothenate kinase; P- 91.7 0.091 3.1E-06 56.9 3.6 27 457-483 79-105 (308)
362 1m8p_A Sulfate adenylyltransfe 91.7 0.26 9E-06 58.3 7.7 39 458-496 396-438 (573)
363 3tqf_A HPR(Ser) kinase; transf 91.6 0.11 3.9E-06 52.6 3.9 28 458-486 16-43 (181)
364 3aez_A Pantothenate kinase; tr 91.6 0.099 3.4E-06 57.2 3.7 27 456-482 88-114 (312)
365 1mv5_A LMRA, multidrug resista 91.6 0.059 2E-06 56.6 1.8 28 455-482 25-52 (243)
366 3cr8_A Sulfate adenylyltranfer 91.5 0.28 9.7E-06 57.8 7.7 41 456-496 367-411 (552)
367 2onk_A Molybdate/tungstate ABC 91.5 0.073 2.5E-06 56.0 2.4 28 454-482 21-48 (240)
368 2zu0_C Probable ATP-dependent 91.4 0.076 2.6E-06 56.6 2.6 28 454-481 42-69 (267)
369 2d2e_A SUFC protein; ABC-ATPas 91.4 0.071 2.4E-06 56.2 2.2 27 455-481 26-52 (250)
370 2ghi_A Transport protein; mult 91.3 0.069 2.3E-06 56.8 2.1 29 454-482 42-70 (260)
371 2i3b_A HCR-ntpase, human cance 91.3 0.1 3.5E-06 52.9 3.2 23 460-482 3-25 (189)
372 3ly5_A ATP-dependent RNA helic 91.3 0.5 1.7E-05 49.5 8.7 19 459-477 92-110 (262)
373 2j0s_A ATP-dependent RNA helic 91.2 1.2 4E-05 49.0 12.0 58 420-479 35-95 (410)
374 2pze_A Cystic fibrosis transme 91.2 0.064 2.2E-06 55.8 1.7 29 454-482 30-58 (229)
375 3fe2_A Probable ATP-dependent 91.2 0.67 2.3E-05 47.6 9.5 19 458-476 66-84 (242)
376 1ji0_A ABC transporter; ATP bi 91.2 0.065 2.2E-06 56.2 1.7 29 455-483 29-57 (240)
377 3dkp_A Probable ATP-dependent 91.2 1 3.5E-05 46.1 10.7 18 458-475 66-83 (245)
378 1sgw_A Putative ABC transporte 91.1 0.064 2.2E-06 55.5 1.5 28 455-482 32-59 (214)
379 2p6r_A Afuhel308 helicase; pro 91.0 0.44 1.5E-05 57.2 8.9 34 458-491 40-76 (702)
380 3tqc_A Pantothenate kinase; bi 91.0 0.21 7.1E-06 55.0 5.6 28 456-483 90-117 (321)
381 2yz2_A Putative ABC transporte 91.0 0.077 2.6E-06 56.5 2.1 29 454-482 29-57 (266)
382 2zj8_A DNA helicase, putative 90.9 0.54 1.8E-05 56.6 9.6 20 457-476 38-57 (720)
383 1rj9_A FTSY, signal recognitio 90.9 0.13 4.4E-06 56.0 3.8 26 457-482 101-126 (304)
384 3pey_A ATP-dependent RNA helic 90.8 0.79 2.7E-05 49.5 9.9 22 458-479 44-65 (395)
385 2qi9_C Vitamin B12 import ATP- 90.8 0.074 2.5E-06 56.3 1.7 29 455-483 23-51 (249)
386 4i1u_A Dephospho-COA kinase; s 90.8 0.22 7.7E-06 51.6 5.2 49 460-511 11-59 (210)
387 1fuu_A Yeast initiation factor 90.7 0.62 2.1E-05 50.5 9.1 56 419-476 18-76 (394)
388 2ihy_A ABC transporter, ATP-bi 90.6 0.078 2.7E-06 57.1 1.7 30 454-483 43-72 (279)
389 3ber_A Probable ATP-dependent 90.6 1 3.5E-05 46.8 10.2 19 458-476 80-98 (249)
390 1wp9_A ATP-dependent RNA helic 90.6 0.58 2E-05 51.5 8.8 37 460-496 25-66 (494)
391 2oxc_A Probable ATP-dependent 90.6 0.76 2.6E-05 46.8 9.0 54 420-475 22-78 (230)
392 3kta_A Chromosome segregation 90.4 0.16 5.5E-06 49.7 3.6 24 460-483 28-51 (182)
393 3b85_A Phosphate starvation-in 90.4 0.11 3.8E-06 53.4 2.6 23 459-481 23-45 (208)
394 3i5x_A ATP-dependent RNA helic 90.4 0.76 2.6E-05 53.2 9.9 19 457-475 110-128 (563)
395 3tbk_A RIG-I helicase domain; 90.3 1.1 3.9E-05 50.8 11.1 34 459-492 20-61 (555)
396 2ocp_A DGK, deoxyguanosine kin 90.3 0.18 6.1E-06 52.1 4.0 26 458-483 2-27 (241)
397 1np6_A Molybdopterin-guanine d 90.2 0.18 6.1E-06 50.5 3.8 25 458-482 6-30 (174)
398 1p5z_B DCK, deoxycytidine kina 90.1 0.083 2.8E-06 55.5 1.4 31 457-487 23-54 (263)
399 1lw7_A Transcriptional regulat 89.8 0.17 5.9E-06 55.9 3.6 28 458-485 170-197 (365)
400 3ux8_A Excinuclease ABC, A sub 89.7 0.24 8.2E-06 59.4 5.0 26 453-478 343-368 (670)
401 3sqw_A ATP-dependent RNA helic 89.7 0.87 3E-05 53.2 9.7 20 457-476 59-78 (579)
402 2f9l_A RAB11B, member RAS onco 89.6 0.18 6.1E-06 50.0 3.2 23 460-482 7-29 (199)
403 2fwr_A DNA repair protein RAD2 89.5 0.48 1.6E-05 53.6 7.1 37 460-496 110-147 (472)
404 1q0u_A Bstdead; DEAD protein, 89.5 0.87 3E-05 45.9 8.4 19 459-477 42-60 (219)
405 3sop_A Neuronal-specific septi 89.5 0.17 5.7E-06 54.1 3.1 23 460-482 4-26 (270)
406 2bbs_A Cystic fibrosis transme 89.4 0.12 4E-06 56.1 1.9 28 455-482 61-88 (290)
407 1oix_A RAS-related protein RAB 89.4 0.18 6E-06 50.0 3.0 23 460-482 31-53 (191)
408 3lxw_A GTPase IMAP family memb 89.3 0.45 1.5E-05 49.7 6.2 24 458-481 21-44 (247)
409 2pjz_A Hypothetical protein ST 89.2 0.13 4.3E-06 55.0 1.9 27 455-482 28-54 (263)
410 3eiq_A Eukaryotic initiation f 89.2 1.1 3.9E-05 48.9 9.7 21 458-478 77-97 (414)
411 3vkw_A Replicase large subunit 89.2 0.98 3.3E-05 51.9 9.3 25 457-481 160-184 (446)
412 4a2p_A RIG-I, retinoic acid in 89.0 1.8 6.1E-05 49.3 11.5 33 459-491 23-63 (556)
413 2j9r_A Thymidine kinase; TK1, 89.0 0.67 2.3E-05 48.2 7.1 31 460-490 30-63 (214)
414 2p67_A LAO/AO transport system 89.0 0.72 2.4E-05 50.6 7.8 27 456-482 54-80 (341)
415 4edh_A DTMP kinase, thymidylat 88.9 0.37 1.3E-05 49.7 5.1 33 458-490 6-41 (213)
416 3fmo_B ATP-dependent RNA helic 88.9 0.83 2.8E-05 49.1 8.1 54 420-475 90-148 (300)
417 2gks_A Bifunctional SAT/APS ki 88.7 0.75 2.6E-05 54.1 8.1 39 458-496 372-413 (546)
418 2f1r_A Molybdopterin-guanine d 88.6 0.17 6E-06 50.4 2.3 23 460-482 4-26 (171)
419 2dyk_A GTP-binding protein; GT 88.6 0.24 8.2E-06 46.4 3.2 23 460-482 3-25 (161)
420 3dz8_A RAS-related protein RAB 88.6 1.2 4E-05 43.6 8.3 23 460-482 25-47 (191)
421 2va8_A SSO2462, SKI2-type heli 88.6 1.4 4.8E-05 52.8 10.6 36 456-491 44-83 (715)
422 1g8f_A Sulfate adenylyltransfe 88.5 0.28 9.5E-06 57.3 4.3 27 458-484 395-421 (511)
423 1xjc_A MOBB protein homolog; s 88.4 0.28 9.6E-06 49.1 3.7 32 459-490 5-39 (169)
424 1nrj_B SR-beta, signal recogni 88.3 0.31 1E-05 48.8 3.9 25 458-482 12-36 (218)
425 2npi_A Protein CLP1; CLP1-PCF1 88.0 0.21 7.1E-06 57.6 2.8 28 455-482 135-162 (460)
426 1kao_A RAP2A; GTP-binding prot 87.9 0.28 9.6E-06 46.0 3.2 23 460-482 5-27 (167)
427 1z2a_A RAS-related protein RAB 87.9 0.27 9.2E-06 46.4 3.1 22 460-481 7-28 (168)
428 2ce2_X GTPase HRAS; signaling 87.9 0.27 9.1E-06 45.9 3.0 23 460-482 5-27 (166)
429 2wsm_A Hydrogenase expression/ 87.8 0.49 1.7E-05 47.5 5.1 24 459-482 31-54 (221)
430 3ux8_A Excinuclease ABC, A sub 87.8 0.97 3.3E-05 54.2 8.5 21 455-475 41-61 (670)
431 1wrb_A DJVLGB; RNA helicase, D 87.8 1.5 5.2E-05 45.1 9.0 18 459-476 61-78 (253)
432 1u8z_A RAS-related protein RAL 87.6 0.3 1E-05 45.8 3.2 23 459-481 5-27 (168)
433 2wji_A Ferrous iron transport 87.6 0.23 7.9E-06 47.7 2.5 22 460-481 5-26 (165)
434 1ek0_A Protein (GTP-binding pr 87.6 0.31 1E-05 45.9 3.2 23 460-482 5-27 (170)
435 2v6i_A RNA helicase; membrane, 87.5 1.6 5.4E-05 49.4 9.6 33 459-491 3-39 (431)
436 3l9o_A ATP-dependent RNA helic 87.5 1.6 5.6E-05 55.5 10.7 33 459-491 200-235 (1108)
437 1z0j_A RAB-22, RAS-related pro 87.4 0.32 1.1E-05 45.9 3.2 23 460-482 8-30 (170)
438 2zej_A Dardarin, leucine-rich 87.3 0.25 8.5E-06 48.3 2.5 21 460-480 4-24 (184)
439 2i4i_A ATP-dependent RNA helic 87.2 2.2 7.4E-05 46.8 10.3 54 420-475 13-69 (417)
440 1pui_A ENGB, probable GTP-bind 87.2 0.14 4.8E-06 50.9 0.6 29 453-481 21-49 (210)
441 2vp4_A Deoxynucleoside kinase; 87.2 0.33 1.1E-05 49.9 3.4 31 457-488 19-49 (230)
442 3v9p_A DTMP kinase, thymidylat 87.1 0.45 1.6E-05 49.7 4.5 33 458-490 25-64 (227)
443 1wms_A RAB-9, RAB9, RAS-relate 87.1 0.33 1.1E-05 46.3 3.2 22 460-481 9-30 (177)
444 3tmk_A Thymidylate kinase; pho 87.1 0.59 2E-05 48.4 5.3 30 458-487 5-34 (216)
445 1z08_A RAS-related protein RAB 87.0 0.33 1.1E-05 45.9 3.2 22 460-481 8-29 (170)
446 1g16_A RAS-related protein SEC 87.0 0.32 1.1E-05 45.9 3.0 22 460-481 5-26 (170)
447 1upt_A ARL1, ADP-ribosylation 87.0 0.42 1.4E-05 45.3 3.8 24 458-481 7-30 (171)
448 2dpy_A FLII, flagellum-specifi 86.9 0.55 1.9E-05 53.7 5.4 31 456-486 155-185 (438)
449 2nzj_A GTP-binding protein REM 86.9 0.32 1.1E-05 46.2 3.0 22 460-481 6-27 (175)
450 1ky3_A GTP-binding protein YPT 86.9 0.34 1.2E-05 46.3 3.2 23 459-481 9-31 (182)
451 2wjg_A FEOB, ferrous iron tran 86.9 0.29 1E-05 47.4 2.7 23 459-481 8-30 (188)
452 1r2q_A RAS-related protein RAB 86.9 0.35 1.2E-05 45.5 3.2 22 460-481 8-29 (170)
453 1c1y_A RAS-related protein RAP 86.8 0.36 1.2E-05 45.4 3.2 22 460-481 5-26 (167)
454 2f7s_A C25KG, RAS-related prot 86.8 2.1 7.1E-05 42.6 9.0 22 460-481 27-48 (217)
455 2lkc_A Translation initiation 86.7 0.39 1.3E-05 45.9 3.5 23 458-480 8-30 (178)
456 2gk6_A Regulator of nonsense t 86.7 0.34 1.2E-05 57.7 3.7 33 460-492 197-233 (624)
457 2erx_A GTP-binding protein DI- 86.7 0.31 1.1E-05 46.0 2.7 22 460-481 5-26 (172)
458 3bc1_A RAS-related protein RAB 86.6 0.36 1.2E-05 46.5 3.2 23 459-481 12-34 (195)
459 1r8s_A ADP-ribosylation factor 86.5 0.38 1.3E-05 45.3 3.2 22 460-481 2-23 (164)
460 3fht_A ATP-dependent RNA helic 86.4 3.1 0.00011 45.2 11.0 19 458-476 64-82 (412)
461 3q85_A GTP-binding protein REM 86.2 0.38 1.3E-05 45.6 3.1 21 460-480 4-24 (169)
462 3fmp_B ATP-dependent RNA helic 86.2 2.5 8.5E-05 47.8 10.3 53 422-476 92-149 (479)
463 2db3_A ATP-dependent RNA helic 86.1 2.1 7.3E-05 48.1 9.7 53 420-474 54-109 (434)
464 2hxs_A RAB-26, RAS-related pro 86.1 0.36 1.2E-05 46.1 2.9 23 459-481 7-29 (178)
465 3lv8_A DTMP kinase, thymidylat 86.1 0.42 1.4E-05 50.2 3.6 33 457-489 26-62 (236)
466 1z0f_A RAB14, member RAS oncog 86.1 0.41 1.4E-05 45.6 3.2 24 459-482 16-39 (179)
467 2y8e_A RAB-protein 6, GH09086P 86.1 0.38 1.3E-05 45.8 3.0 22 460-481 16-37 (179)
468 2qm8_A GTPase/ATPase; G protei 86.0 0.43 1.5E-05 52.5 3.7 27 456-482 53-79 (337)
469 1ko7_A HPR kinase/phosphatase; 86.0 0.46 1.6E-05 52.2 3.9 29 458-487 144-172 (314)
470 2obl_A ESCN; ATPase, hydrolase 85.9 0.55 1.9E-05 52.0 4.6 29 457-485 70-98 (347)
471 2qag_B Septin-6, protein NEDD5 85.9 0.3 1E-05 55.8 2.6 27 455-481 37-65 (427)
472 3q72_A GTP-binding protein RAD 85.9 0.35 1.2E-05 45.6 2.7 21 460-480 4-24 (166)
473 2atv_A RERG, RAS-like estrogen 85.9 0.45 1.6E-05 46.8 3.5 24 458-481 28-51 (196)
474 4dsu_A GTPase KRAS, isoform 2B 85.9 0.42 1.4E-05 46.1 3.2 23 460-482 6-28 (189)
475 2fn4_A P23, RAS-related protei 85.8 0.39 1.3E-05 45.8 3.0 23 459-481 10-32 (181)
476 1svi_A GTP-binding protein YSX 85.8 0.51 1.7E-05 46.0 3.9 24 458-481 23-46 (195)
477 2gj8_A MNME, tRNA modification 85.8 0.36 1.2E-05 46.9 2.7 23 459-481 5-27 (172)
478 3con_A GTPase NRAS; structural 85.7 0.43 1.5E-05 46.4 3.2 23 460-482 23-45 (190)
479 2a9k_A RAS-related protein RAL 85.7 0.43 1.5E-05 45.8 3.2 23 459-481 19-41 (187)
480 4ag6_A VIRB4 ATPase, type IV s 85.7 0.71 2.4E-05 51.3 5.4 25 457-481 34-58 (392)
481 3szr_A Interferon-induced GTP- 85.6 0.39 1.3E-05 57.1 3.4 49 430-481 20-68 (608)
482 3t1o_A Gliding protein MGLA; G 85.6 0.43 1.5E-05 46.2 3.2 23 460-482 16-38 (198)
483 2oil_A CATX-8, RAS-related pro 85.5 0.44 1.5E-05 46.5 3.2 23 459-481 26-48 (193)
484 3clv_A RAB5 protein, putative; 85.4 0.57 1.9E-05 45.3 3.9 24 458-481 7-30 (208)
485 2efe_B Small GTP-binding prote 85.4 0.45 1.5E-05 45.6 3.2 22 460-481 14-35 (181)
486 1m7b_A RND3/RHOE small GTP-bin 85.4 0.42 1.4E-05 46.5 3.0 23 459-481 8-30 (184)
487 2bme_A RAB4A, RAS-related prot 85.2 0.44 1.5E-05 46.0 3.0 23 459-481 11-33 (186)
488 3ld9_A DTMP kinase, thymidylat 85.2 0.52 1.8E-05 49.1 3.7 32 457-488 20-55 (223)
489 2p5s_A RAS and EF-hand domain 85.2 0.49 1.7E-05 46.7 3.4 24 458-481 28-51 (199)
490 3fho_A ATP-dependent RNA helic 85.1 2.3 7.8E-05 49.0 9.4 20 458-477 158-177 (508)
491 1yqt_A RNAse L inhibitor; ATP- 85.1 0.44 1.5E-05 55.8 3.5 28 455-482 44-71 (538)
492 3tw8_B RAS-related protein RAB 85.0 0.43 1.5E-05 45.5 2.8 22 459-480 10-31 (181)
493 2g6b_A RAS-related protein RAB 85.0 0.49 1.7E-05 45.2 3.2 24 459-482 11-34 (180)
494 2qtf_A Protein HFLX, GTP-bindi 84.9 2.9 0.0001 46.5 9.9 22 460-481 181-202 (364)
495 1mh1_A RAC1; GTP-binding, GTPa 84.8 0.51 1.7E-05 45.3 3.2 22 460-481 7-28 (186)
496 1f2t_A RAD50 ABC-ATPase; DNA d 84.8 0.5 1.7E-05 45.7 3.2 23 460-482 25-47 (149)
497 3kkq_A RAS-related protein M-R 84.8 0.51 1.7E-05 45.5 3.2 23 459-481 19-41 (183)
498 2b6h_A ADP-ribosylation factor 84.5 0.64 2.2E-05 45.9 3.9 25 456-480 27-51 (192)
499 2gf9_A RAS-related protein RAB 84.5 0.52 1.8E-05 45.9 3.2 23 460-482 24-46 (189)
500 1knx_A Probable HPR(Ser) kinas 84.5 0.52 1.8E-05 51.7 3.4 30 457-487 146-175 (312)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.6e-78 Score=701.12 Aligned_cols=442 Identities=42% Similarity=0.751 Sum_probs=377.6
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~ 498 (938)
.+.++|+||+|+++++++|++++.++++|..|..+|.+.|+|+||+||||||||++|+++|++++.||+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEec
Q 002307 499 VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 578 (938)
Q Consensus 499 vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAAT 578 (938)
.|.+..+++.+|..|+..+||||||||||.++.+++....+ .+.+..+++++||.+|+++....+++||++|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g--------~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG--------GHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----------------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc--------CcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 99999999999999999999999999999998877543222 4456678899999999998877899999999
Q ss_pred CCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 002307 579 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGH 658 (938)
Q Consensus 579 N~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~ 658 (938)
|+++.+|++++|||||++.|.+++|+.++|.+|++.++++.++..++++..++..++|++|+||+++|++|+..|.+++.
T Consensus 162 n~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~ 241 (476)
T 2ce7_A 162 NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR 241 (476)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999888
Q ss_pred cccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEEEeecc-ccCceeEEecC
Q 002307 659 ESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRG-QTLSQLVFHRL 737 (938)
Q Consensus 659 ~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvtIvpRg-~alG~~~~~~~ 737 (938)
..|+.+|+..|++++..+..++...+++.+++++++||+|||++++++++. +++++++|+||| +++||+++.|.
T Consensus 242 ~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~-----~~~~~~~i~prg~~alg~~~~~p~ 316 (476)
T 2ce7_A 242 DKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNG-----EPVHRISIIPRGYKALGYTLHLPE 316 (476)
T ss_dssp SSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTC-----CCCCEEECC---------------
T ss_pred CeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCc-----cccceeeeecCcccccceEEEcCc
Confidence 999999999999999998887777888889999999999999999999987 899999999999 99999999886
Q ss_pred CCcccccCCHHHHHHHHHHHhhHHHHHHHHhCCCCCccCCChHHHHHHHHHHHHHHhcCCccccccCCCCCccccc--cc
Q 002307 738 DDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV--KF 815 (938)
Q Consensus 738 ~~~~~~~ttr~~l~~~I~vlLaGRAAEel~fG~~STGAs~DDL~~AT~lAr~MV~~~GMs~~l~~~gG~~~~~~~~--~f 815 (938)
++.++++ |.+|+++|+++|||||||+++||++||||++| |++||+||+.||++||||+++ |++.|.... .|
T Consensus 317 -~~~~~~~-~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~D-l~~at~~a~~mv~~~gm~~~~----g~~~~~~~~~~~~ 389 (476)
T 2ce7_A 317 -EDKYLVS-RNELLDKLTALLGGRAAEEVVFGDVTSGAAND-IERATEIARNMVCQLGMSEEL----GPLAWGKEEQEVF 389 (476)
T ss_dssp ---CCSCB-HHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHH-HHHHHHHHHHHHHTSCCCTTT----CSCCCCC------
T ss_pred -ccccccC-HHHHHHHHHHHHhHHHHHhhhcCCCCcccHHH-HHHHHHHHHHHHHHhCCCCcC----CceeecCCCcccc
Confidence 5677766 99999999999999999999999999999987 999999999999999999999 999987543 56
Q ss_pred cCCCcccCCCccCCCCCCCCCCCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHH
Q 002307 816 VGPRLDFEGSLYDDYGLTEPPVNFNLDDDIA----WRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDF 891 (938)
Q Consensus 816 ~G~~~~~~g~~~~d~~~~~~~~~~~~se~~a----~~I~~lL~~ay~rA~~LL~~~r~~L~~LA~~LLekEtL~geEi~~ 891 (938)
+|+++ ....++|++++ ++|+++|++||++|++||++|++.|++||++|+++|+|+++||++
T Consensus 390 ~~~~~---------------~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~ 454 (476)
T 2ce7_A 390 LGKEI---------------TRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRR 454 (476)
T ss_dssp ----------------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHH
T ss_pred ccccc---------------cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHH
Confidence 66543 12356777665 456999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 002307 892 ILNN 895 (938)
Q Consensus 892 IL~~ 895 (938)
|++.
T Consensus 455 ~~~~ 458 (476)
T 2ce7_A 455 ILSE 458 (476)
T ss_dssp HTC-
T ss_pred Hhcc
Confidence 9975
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=9.9e-78 Score=698.07 Aligned_cols=479 Identities=40% Similarity=0.687 Sum_probs=413.4
Q ss_pred ccccccccccccccccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 402 WQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
++.++|++++++...+. +.++|+||+|++++++++++++.+++++..|..+|.+.|+|+||+||||||||+||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp ---------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35688999999877776 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHH
Q 002307 482 AGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 561 (938)
Q Consensus 482 lg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~ 561 (938)
++.+|+.++++++.+.+.|....+++.+|+.++...|||+||||||.++..++..... ..++..++++++|.
T Consensus 88 ~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~--------~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 88 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG--------GNDEREQTLNQLLV 159 (499)
T ss_dssp TTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTT--------SSHHHHHHHHHHHH
T ss_pred hCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCC--------CcHHHHHHHHHHHH
Confidence 9999999999999888888888899999999988889999999999998766532111 34566788999999
Q ss_pred HhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHH
Q 002307 562 ELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGAR 641 (938)
Q Consensus 562 eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaD 641 (938)
+|++...+..++++++||+|+.+|++++|||||++.|.|++|+.++|.+||+.++++..+..++++..+|..++|++|+|
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gad 239 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHH
T ss_pred HhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHH
Confidence 99999888889999999999999999999999999999999999999999999998888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEE
Q 002307 642 LAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 721 (938)
Q Consensus 642 L~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvt 721 (938)
|+++|++|+..|.+++...|+.+|+.+|++++..+.+++...+++.++++++|||+|||++++++++. ++++++|
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~-----~~v~~~~ 314 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHA-----DGVHKVT 314 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSC-----CCCCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCC-----CeeeEEE
Confidence 99999999999988888899999999999999999887778889999999999999999999999877 8999999
Q ss_pred EeeccccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhCCCCCccCCChHHHHHHHHHHHHHHhcCCcccc
Q 002307 722 IVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMV 801 (938)
Q Consensus 722 IvpRg~alG~~~~~~~~~~~~~~ttr~~l~~~I~vlLaGRAAEel~fG~~STGAs~DDL~~AT~lAr~MV~~~GMs~~l~ 801 (938)
|+|||+++||++ |..++.++++ +.+|+++|+++|||||||+++||++||||++| |++||+||+.||++||||+++
T Consensus 315 i~pr~~~~g~~~--p~q~~~~~~t-~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~D-l~~at~~a~~mv~~~gm~~~~- 389 (499)
T 2dhr_A 315 IVPRGRALGFMM--PRREDMLHWS-RKRLLDQIAVALAGRAAEEIVFDDVTTGAEND-FRQATELARRMITEWGMHPEF- 389 (499)
T ss_dssp SCCSSCTTCSSH--HHHTTCCCCC-HHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHH-HHHHHHHHHHHHTTSCCCSSS-
T ss_pred eecCCCcCcccc--cchhhhhccC-HHHHHHHHHHHhhhHhHHHhhhcccCcccHHH-HHHHHHHHHHHHHHhCCCCCC-
Confidence 999999999998 4324677776 99999999999999999999999999999987 999999999999999999999
Q ss_pred ccCCCCCccccc-cccCCCcccCCCccCCCCCCCCCCCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002307 802 IHGEPPPWRKKV-KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIA----WRTEELLRDMYGRTVTLLRRHHAALLKTVK 876 (938)
Q Consensus 802 ~~gG~~~~~~~~-~f~G~~~~~~g~~~~d~~~~~~~~~~~~se~~a----~~I~~lL~~ay~rA~~LL~~~r~~L~~LA~ 876 (938)
|++.|.... .|+| ++ ...++|++++ .+|+++|++||++|++||++|++.|++||+
T Consensus 390 ---g~~~~~~~~~~~~~-~~----------------~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~ 449 (499)
T 2dhr_A 390 ---GPVAYAVREDTYLG-GY----------------DVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAE 449 (499)
T ss_dssp ---CSCCCCCCCCCSSC-CC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ---CceeecCCCccccc-cc----------------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887543 4444 22 1345777665 566999999999999999999999999999
Q ss_pred HHHHhcccCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcc
Q 002307 877 VLLNQKEIGREEIDFILNNYPPQTPISRLLEEENPGTLPFIKQ 919 (938)
Q Consensus 877 ~LLekEtL~geEi~~IL~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (938)
+|+++|||+++||++|++..++..|.....+.++|+.+|+.+.
T Consensus 450 ~l~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (499)
T 2dhr_A 450 TLLERETLTAEEFQRVVEGLPLEAPEEAREEREPPRVVPKVKP 492 (499)
T ss_dssp HHHHHSEECHHHHHHHHTTCCCCCCC-----------------
T ss_pred HHHHhCeeCHHHHHHHhccCCCCCcchhhhccCCCCcCCCcCC
Confidence 9999999999999999999888888888888899999987543
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-50 Score=454.08 Aligned_cols=254 Identities=38% Similarity=0.681 Sum_probs=241.1
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
...+.|+++|+||+|++++|++|++.|.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 45677999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+.++|+|.++..++.+|..|+..+||||||||||+++++|.....+ .+.+..+++++||.+|||+....+|+
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG--------GDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG--------GGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred hhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCC--------CcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 9999999999999999999999999999999999999887654332 44567789999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
||+|||+|+.||+|++||||||+.|+|++||.++|.+||+.|+++.++..++|+..+|+.|+||||+||+++|++|++.|
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccchhhHHHHHHhhccC
Q 002307 654 VRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 654 ~r~~~~~It~edl~~Ai~rv~~g 676 (938)
.++++..|+.+||..|++++...
T Consensus 370 ir~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 370 LRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHTTCSBCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCcCHHHHHHHHHHHhCc
Confidence 99999999999999999998754
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-49 Score=444.63 Aligned_cols=254 Identities=39% Similarity=0.688 Sum_probs=240.7
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
.+++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 45778999999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+.++|+|.++..++.+|..|+..+||||||||||+++.+|.....+ .+.+..+++++||.+||++....+|+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~--------~~~~~~~~l~~LL~~lDg~~~~~~Vi 323 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG--------GEREIQRTMLELLNQLDGFDDRGDVK 323 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCS--------SCCHHHHHHHHHHHHHHHCCCSSSEE
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCC--------ccHHHHHHHHHHHHHhhCcCCCCCEE
Confidence 9999999999999999999999999999999999999988654322 33456788999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
||+|||+|+.||+|++||||||++|+|++||.++|.+||+.|+++.++..++|+..+|+.|+||||+||+++|++|++.|
T Consensus 324 VIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~A 403 (437)
T 4b4t_I 324 VIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLA 403 (437)
T ss_dssp EEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccchhhHHHHHHhhccC
Q 002307 654 VRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 654 ~r~~~~~It~edl~~Ai~rv~~g 676 (938)
.++++..|+.+||..|++++..+
T Consensus 404 ir~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 404 LRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHcCCCccCHHHHHHHHHHHhCC
Confidence 99999999999999999998754
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-48 Score=445.25 Aligned_cols=257 Identities=39% Similarity=0.662 Sum_probs=242.9
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
.+++.|+++|+||+|++++|++|++.|.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.+++++
T Consensus 199 ~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 199 TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 35678999999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+.++|+|.++..++.+|..|+..+||||||||+|+++.+|.....+ .......+++++|.+||++....+|+
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~~Vi 350 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG--------GDNEVQRTMLELITQLDGFDPRGNIK 350 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG--------GGGHHHHHHHHHHHHHHSSCCTTTEE
T ss_pred hhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCC--------ccHHHHHHHHHHHHHhhccCCCCcEE
Confidence 9999999999999999999999999999999999999887653322 34456788999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.|+++.++..++|+..+|+.|+||||+||+++|++|++.|
T Consensus 351 VIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~A 430 (467)
T 4b4t_H 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFA 430 (467)
T ss_dssp EEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccchhhHHHHHHhhccCCCc
Q 002307 654 VRKGHESILSSDMDDAVDRLTVGPKR 679 (938)
Q Consensus 654 ~r~~~~~It~edl~~Ai~rv~~g~~~ 679 (938)
+++++..|+.+||..|++++..|.++
T Consensus 431 ir~~~~~it~~Df~~Al~kV~~g~~k 456 (467)
T 4b4t_H 431 IRARRKVATEKDFLKAVDKVISGYKK 456 (467)
T ss_dssp HHHTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred HHcCCCccCHHHHHHHHHHHhcCccc
Confidence 99999999999999999999887654
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-48 Score=440.93 Aligned_cols=254 Identities=39% Similarity=0.681 Sum_probs=239.6
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
..++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 45678999999999999999999998876 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+.++|+|.++..++.+|..|+..+||||||||||+++++|.....+ ...+...++++||.+||++....+|+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~--------~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKS--------GDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGG--------TTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCC--------CchHHHHHHHHHHHHhhccCCCCCEE
Confidence 9999999999999999999999999999999999999887543222 34566788999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
||||||+|+.||+|++||||||+.|+|++||.++|.+||+.|+++.++..++|+..+|+.|+||||+||+++|++|++.|
T Consensus 323 VIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a 402 (434)
T 4b4t_M 323 VLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIA 402 (434)
T ss_dssp EEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccchhhHHHHHHhhccC
Q 002307 654 VRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 654 ~r~~~~~It~edl~~Ai~rv~~g 676 (938)
.++++..|+.+||..|+.++...
T Consensus 403 ~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 403 LRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HHHTCSSBCHHHHHHHHHSCSSS
T ss_pred HHcCCCCcCHHHHHHHHHHHhCC
Confidence 99999999999999999988654
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-48 Score=439.64 Aligned_cols=254 Identities=42% Similarity=0.680 Sum_probs=239.9
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 44567999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+.++|+|.++..++.+|..|+.++||||||||||+++.+|...... .+.+...++++||.+|||+....+|+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~~vi 322 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS--------ADREIQRTLMELLTQMDGFDNLGQTK 322 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS--------STTHHHHHHHHHHHHHHSSSCTTSSE
T ss_pred hccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCC--------cchHHHHHHHHHHHHhhcccCCCCeE
Confidence 9999999999999999999999999999999999999887543322 34456788999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A 653 (938)
||+|||+|+.||||++||||||+.|+|++||.++|.+||+.|+++.++..++|+..+|+.|+||||+||.++|++|++.|
T Consensus 323 vI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~a 402 (437)
T 4b4t_L 323 IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFA 402 (437)
T ss_dssp EEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccchhhHHHHHHhhccC
Q 002307 654 VRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 654 ~r~~~~~It~edl~~Ai~rv~~g 676 (938)
.++++..|+.+||..|++++...
T Consensus 403 ir~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 403 IRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998654
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-47 Score=432.39 Aligned_cols=253 Identities=41% Similarity=0.666 Sum_probs=238.2
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 44677999999999999999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+.++|+|.++..++.+|..|+..+||||||||+|+++.+|.....+ .+.+..+++++||.+|||+....+|+
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~--------~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG--------SDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSC--------CCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCC--------CChHHHHHHHHHHHHhhCCCCCCCEE
Confidence 9999999999999999999999999999999999999888543322 33456788999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceEEecc-CCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIR-APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 652 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~-lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~ 652 (938)
||+|||+|+.||+|++||||||+.|+++ +|+.++|..||+.++++.++..++|+..+|..|+||||+||+++|++|++.
T Consensus 314 vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~ 393 (428)
T 4b4t_K 314 VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLR 393 (428)
T ss_dssp EEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred EEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcccchhhHHHHHHhhcc
Q 002307 653 AVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 653 A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
|.++++..|+.+||.+|+.+++.
T Consensus 394 a~r~~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 394 AVRKNRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHSC
T ss_pred HHHCCCCCCCHHHHHHHHHHhhC
Confidence 99999999999999999988764
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=9.1e-43 Score=368.43 Aligned_cols=198 Identities=24% Similarity=0.431 Sum_probs=152.3
Q ss_pred cCCCccCcccccccchhhhHHHHHHHHHHhhhhccccccccccceEEEeeccccCceeEEecCCCcccccCCHHHHHHHH
Q 002307 675 VGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRL 754 (938)
Q Consensus 675 ~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~~~~~~~~~~v~kvtIvpRg~alG~~~~~~~~~~~~~~ttr~~l~~~I 754 (938)
.|++++++.+++.+++++||||+||||++++++.. +++++|||+|||+++||+++.|. ++.++++ |.+|+++|
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~-----~pV~KVTIiPRG~alG~t~~~P~-ed~~~~t-k~~l~~~i 74 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDD-----DKVHKISIIPRGMALGVTQQLPI-EDKHIYD-KKDLYNKI 74 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSC-----CCCCCEECC-----------------CCCCB-HHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCC-----CceeEEEEeecCCcceEEEeCCc-ccccccC-HHHHHHHH
Confidence 57777788899999999999999999999999977 89999999999999999999886 5677776 99999999
Q ss_pred HHHhhHHHHHHHHh--CCCCCccCCChHHHHHHHHHHHHHHhcCCccccccCCCCCccccc-cccCCCcccCCCccCCCC
Q 002307 755 QVLLGGRAAEEVIY--GQDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV-KFVGPRLDFEGSLYDDYG 831 (938)
Q Consensus 755 ~vlLaGRAAEel~f--G~~STGAs~DDL~~AT~lAr~MV~~~GMs~~l~~~gG~~~~~~~~-~f~G~~~~~~g~~~~d~~ 831 (938)
+|+|||||||+++| |++||||++| |++||+||+.||+.||||+++ ||++|.... .|+| ++
T Consensus 75 ~v~LgGRaAEelifG~g~vttGA~~D-l~~AT~iAr~MV~~~GMs~~l----G~v~~~~~~~~flg-~~----------- 137 (238)
T 2di4_A 75 LVLLGGRAAEEVFFGKDGITTGAEND-LQRATDLAYRMVSMWGMSDKV----GPIAIRRVANPFLG-GM----------- 137 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGGGHHH-HHHHHHHHHHHHHTSCCCTTT----CSCCCCC---------------------
T ss_pred HHHHhHHHHHHHHhCCCCcccChHhH-HHHHHHHHHHHHHHhCCCCCC----CceeecCCcccccc-cc-----------
Confidence 99999999999999 7899999987 999999999999999999999 999987544 4555 22
Q ss_pred CCCCCCCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCC
Q 002307 832 LTEPPVNFNLDDDIAW----RTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILNNYPPQT 900 (938)
Q Consensus 832 ~~~~~~~~~~se~~a~----~I~~lL~~ay~rA~~LL~~~r~~L~~LA~~LLekEtL~geEi~~IL~~~~~~~ 900 (938)
+...++|++++. +|++||++||++|++||++|++.|++||++|+++|||+++||++|++.++...
T Consensus 138 ----~~~~~~Se~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~~~ 206 (238)
T 2di4_A 138 ----TTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIEL 206 (238)
T ss_dssp -----CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTCCC
T ss_pred ----ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCCCc
Confidence 134578887764 56899999999999999999999999999999999999999999998765444
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.2e-42 Score=419.49 Aligned_cols=233 Identities=42% Similarity=0.739 Sum_probs=188.5
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
....++++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 3456889999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
.++|+|.+++.++.+|..|+..+||||||||||+++++|+....+ .+....+++++||.+|||+....+|+|
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~--------~~~~~~rv~~~lL~~mdg~~~~~~V~v 619 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD--------GGGAADRVINQILTEMDGMSTKKNVFI 619 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----------------------CHHHHHHHHHHHSSCSSSSEEE
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC--------CchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 999999999999999999999999999999999999888543221 233456789999999999999999999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
|+|||+|+.||+|++||||||+.|+|++||.++|.+||+.++++.++..++|+..+|+.|+||||+||+++|++|++.|.
T Consensus 620 i~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp ECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHH
T ss_pred EEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q 002307 655 RK 656 (938)
Q Consensus 655 r~ 656 (938)
++
T Consensus 700 r~ 701 (806)
T 3cf2_A 700 RE 701 (806)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6e-40 Score=398.19 Aligned_cols=250 Identities=40% Similarity=0.695 Sum_probs=231.3
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~ 495 (938)
...+.++|+||+|+++++++|++.+.+ +++|+.|..+|+++|+|||||||||||||+||+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 345789999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEE
Q 002307 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (938)
Q Consensus 496 ~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVI 575 (938)
+.+.|.++..++.+|..|+.++||||||||||+|+++|+...+ ....+++++||.+||++..+.+|+||
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~-----------~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-----------EVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC-----------TTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC-----------hHHHHHHHHHHHHHhcccccCCEEEE
Confidence 9999999999999999999999999999999999988765322 22357889999999999888999999
Q ss_pred EecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 002307 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 655 (938)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r 655 (938)
+|||+++.||++++||||||+.|++++||.++|.+||+.++++..+..++|+..+|..|+||+|+||.++|++|+..|.+
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~ 424 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hCC-----------------cccchhhHHHHHHhhccCC
Q 002307 656 KGH-----------------ESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 656 ~~~-----------------~~It~edl~~Ai~rv~~g~ 677 (938)
+.. ..|+.+||..|+..+....
T Consensus 425 r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 425 KKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred hccccccccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 632 2478899999998876543
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1e-36 Score=322.43 Aligned_cols=253 Identities=51% Similarity=0.879 Sum_probs=227.6
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
+..+..+|+||+|+++++++|.+++.++.+++.|..+|...++++||+||||||||++|+++|++++.|++.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEE
Q 002307 497 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 576 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIA 576 (938)
.+.|.+...++.+|..|....|+++||||+|.++..++....+ ...+....+++++..++++..+.+++||+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~--------~~~~~~~~~~~ll~~l~~~~~~~~~~vI~ 155 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG--------GHDEREQTLNQMLVEMDGFEGNEGIIVIA 155 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCC--------TTCHHHHHHHHHHHHHHTCCSSSCEEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCC--------CchHHHHHHHHHHHHhhCcccCCCEEEEE
Confidence 8888888899999999999899999999999998876543222 23345678899999999988888999999
Q ss_pred ecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 002307 577 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 656 (938)
Q Consensus 577 ATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~ 656 (938)
+||+++.+|++++|||||++.+.+++|+.++|.+|++.++++.++..+.++..++..++||+++||.++|++|...|.++
T Consensus 156 ~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp EESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHHhhccCC
Q 002307 657 GHESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 657 ~~~~It~edl~~Ai~rv~~g~ 677 (938)
+...|+.+|+..|++++..|.
T Consensus 236 ~~~~i~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 236 NKRVVSMVEFEKAKDKIMMGL 256 (257)
T ss_dssp TCSSBCHHHHHHHHHHHTTCC
T ss_pred CCCcccHHHHHHHHHHHhcCC
Confidence 989999999999999998765
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.9e-36 Score=329.73 Aligned_cols=250 Identities=39% Similarity=0.690 Sum_probs=222.5
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~ 495 (938)
.+.+.++|+||+|++++++.|.+.+.+ +.+|+.|..+|+.+++++||+||||||||++|+++|++++.+|+.++|+++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 445789999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEE
Q 002307 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (938)
Q Consensus 496 ~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVI 575 (938)
+.+.|.....++.+|..|+...||||||||||.+...++...... .....+.++++|..++++....+++||
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~--------~~~~~~~~~~lL~~l~~~~~~~~v~vi 158 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG--------GGAADRVINQILTEMDGMSTKKNVFII 158 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCS--------SCSCCHHHHHHHHHHHSSCTTSSEEEE
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCc--------chHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 999999999999999999999999999999999998765422110 011235678899999988878899999
Q ss_pred EecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 002307 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 655 (938)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r 655 (938)
+|||+++.+|++++|||||++.+++++|+.++|.+|++.++++.++..++++..++..+.||+|+||.++|++|+..|.+
T Consensus 159 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~ 238 (301)
T 3cf0_A 159 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 238 (301)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999998875
Q ss_pred hCC-------------------------cccchhhHHHHHHhhc
Q 002307 656 KGH-------------------------ESILSSDMDDAVDRLT 674 (938)
Q Consensus 656 ~~~-------------------------~~It~edl~~Ai~rv~ 674 (938)
+.. ..|+.+||..|+.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 239 ESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp HHHHHHC--------------------CCCBCHHHHHHHHTTCC
T ss_pred HHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 421 2477888888887664
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=325.70 Aligned_cols=247 Identities=38% Similarity=0.680 Sum_probs=208.6
Q ss_pred CCCcccCcccCcHHHHHHHHHHHH-HhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 419 STGVKFSDVAGIDEAVEELQELVR-YLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~-~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
.++++|+||+|++++|++|++.+. .+.+++.++.+++.+++|++|+||||||||+|++++|++++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 478999999999999999998665 4999999999999999999999999999999999999999999999999998888
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe
Q 002307 498 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (938)
Q Consensus 498 ~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA 577 (938)
+.+.....++.+|..++...|||+|+||+|.++..+.... .....+.+++++.+|++......++++++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~-----------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~ 152 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE-----------TGASVRVVNQLLTEMDGLEARQQVFIMAA 152 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC--------------------CTTHHHHHHHHHHTCCSTTCEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc-----------chHHHHHHHHHHHhhhcccccCCEEEEee
Confidence 8888888999999999889999999999999876543210 01123567899999999988889999999
Q ss_pred cCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcc---cccCCccCHHHHHhhCC--CCCHHHHHHHHHHHHHH
Q 002307 578 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK---VKMSDSVDLSSYAKNLP--GWTGARLAQLVQEAALV 652 (938)
Q Consensus 578 TN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~---~~l~~dvdL~~LA~~t~--GfSgaDL~~Lv~eA~l~ 652 (938)
||+|+.||++++||||||+.|++++|+.++|.+||+.++++ ..+..++++..+|..+. ||||+||.++|++|+..
T Consensus 153 tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~ 232 (274)
T 2x8a_A 153 TNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASIC 232 (274)
T ss_dssp ESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999854 34567889999999754 99999999999999999
Q ss_pred HHHhC-----------CcccchhhHHHHHHhhccC
Q 002307 653 AVRKG-----------HESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 653 A~r~~-----------~~~It~edl~~Ai~rv~~g 676 (938)
|.++. ...|+.+||..|+.++...
T Consensus 233 a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 233 ALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp HHHHHC-----------CCBCHHHHHHHHTTCCCC
T ss_pred HHHHHHhhccccccccCCeecHHHHHHHHHHhcCC
Confidence 98752 2369999999999988654
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=316.10 Aligned_cols=257 Identities=48% Similarity=0.796 Sum_probs=204.4
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~v 499 (938)
++++|++|+|++++++.|.+++.++.+++.|..+|...++++||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecC
Q 002307 500 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATN 579 (938)
Q Consensus 500 G~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN 579 (938)
+.+...++.+|..+....|+||||||+|.+..++.....+ ....+....++.++..+++.....+++||++||
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~-------~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn 153 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG-------FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTN 153 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC--------------------------CHHHHHHHHHHHTCCTTCCEEEEEEES
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccC-------ccchhHHHHHHHHHHHhhCcCCCCCEEEEecCC
Confidence 8888889999999999999999999999998765432111 012334567889999999887778999999999
Q ss_pred CCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC--HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 002307 580 RRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD--LSSYAKNLPGWTGARLAQLVQEAALVAVRKG 657 (938)
Q Consensus 580 ~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd--L~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~ 657 (938)
.++.+|++++|+|||+..+++++|+.++|.+|++.++...++..+.+ +..++..+.|+++++|.++|++|+..|.+++
T Consensus 154 ~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~ 233 (262)
T 2qz4_A 154 RADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 233 (262)
T ss_dssp CGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----
T ss_pred ChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998876654433 4789999999999999999999999999888
Q ss_pred CcccchhhHHHHHHhhccCCCccCcc
Q 002307 658 HESILSSDMDDAVDRLTVGPKRRGIE 683 (938)
Q Consensus 658 ~~~It~edl~~Ai~rv~~g~~~~~~~ 683 (938)
...|+.+|+..|+.++..+..++...
T Consensus 234 ~~~i~~~d~~~a~~~~~~~~~~~~~~ 259 (262)
T 2qz4_A 234 HTSVHTLNFEYAVERVLAGTAKKSKI 259 (262)
T ss_dssp ---CCBCCHHHHHHHHHHHHHCC---
T ss_pred CCCCCHHHHHHHHHHhccChhhhhHh
Confidence 89999999999999998776554433
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-35 Score=316.27 Aligned_cols=252 Identities=46% Similarity=0.798 Sum_probs=232.3
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~ 495 (938)
...+.++|++|+|++++++.|.+.+.. +.+++.|..+|..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 456789999999999999999998886 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEE
Q 002307 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (938)
Q Consensus 496 ~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVI 575 (938)
..+.|.....++.+|..++...|+||||||+|.+..+++....+ ........+..++..++++....+++||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~--------~~~~~~~~l~~ll~~~~~~~~~~~~~vI 160 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG--------GDREVQRTLMQLLAEMDGFDARGDVKII 160 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCG--------GGGHHHHHHHHHHHHHHTTCSSSSEEEE
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCC--------ccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 88899999999999999999999999999999998776543222 3445677889999999988888899999
Q ss_pred EecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 002307 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 655 (938)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r 655 (938)
+|||.++.+|++++|++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.|+++++|.++|++|...|.+
T Consensus 161 ~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 161 GATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240 (285)
T ss_dssp EECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred hCCcccchhhHHHHHHhhccC
Q 002307 656 KGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 656 ~~~~~It~edl~~Ai~rv~~g 676 (938)
++...|+.+|+..|+.++...
T Consensus 241 ~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 241 ELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp TTCSSBCHHHHHHHHHHHHHH
T ss_pred hccCcCCHHHHHHHHHHHHhc
Confidence 999999999999999998643
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=7.9e-34 Score=299.76 Aligned_cols=248 Identities=53% Similarity=0.895 Sum_probs=220.2
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
.....+.++|+||+|+++++.++++++..+.++..+..++...++|++|+||||||||+|++++|+..+.+++.+++.++
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34566889999999999999999999998989999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
...+.+.....++.+|+.+....|+++|+||+|.++..+..... ....+..+.+++++.++++......+++
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~--------~~~~~~~~~~~~ll~~l~g~~~~~~~i~ 157 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG--------GGNDEREQTLNQLLVEMDGFEKDTAIVV 157 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-----------------CHHHHHHHHHHHHHHHTCCTTCCEEE
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccc--------ccchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 87777777788899999998888999999999999876542111 1234556788999999999888788999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
+++||+|+.+|++++|++||++.++++.|+.++|.+||+.+++...+..++++..+|..++|++++||+++|++|+..|.
T Consensus 158 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 158 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAA 237 (254)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HhCCcccchhhHHHHH
Q 002307 655 RKGHESILSSDMDDAV 670 (938)
Q Consensus 655 r~~~~~It~edl~~Ai 670 (938)
+++...|+.+|+.+|+
T Consensus 238 ~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 238 REGRRKITMKDLEEAA 253 (254)
T ss_dssp HTTCSSBCHHHHHHHT
T ss_pred HhcCCCcCHHHHHHHh
Confidence 8888899999999885
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=316.76 Aligned_cols=226 Identities=36% Similarity=0.616 Sum_probs=202.9
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCCEEEEeCchh
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAGSEF 494 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-g~pfi~vs~sel 494 (938)
.+.++++|+||+|++++|+.|++.+.+ +++|+.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 355789999999999999999998886 899998864 35778999999999999999999999999 899999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-CCeEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVI 573 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-~~~Vi 573 (938)
...+.|..+..++.+|..|+..+||||||||||.+.++++.. ......+.+++++..++++.. ..+++
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-----------~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-----------ESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-----------CTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-----------cchHHHHHHHHHHHHHhcccccCCCEE
Confidence 999999999999999999999999999999999998876542 122345678999999998853 67899
Q ss_pred EEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 002307 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALV 652 (938)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~ 652 (938)
||+|||+++.+|++++| ||++.+++++|+.++|.+||+.++.+.+.. .+.++..+++.+.||+|+||.++|++|+..
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQ 229 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999877654 567799999999999999999999999999
Q ss_pred HHHh
Q 002307 653 AVRK 656 (938)
Q Consensus 653 A~r~ 656 (938)
|.++
T Consensus 230 a~r~ 233 (322)
T 1xwi_A 230 PVRK 233 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.2e-34 Score=316.05 Aligned_cols=229 Identities=35% Similarity=0.580 Sum_probs=201.6
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
.....++++|+||+|++++++.|.+.+.+ +..|+.|.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 45567889999999999999999998876 888888865 5678899999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc-CCCeE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-TGKGV 572 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~-~~~~V 572 (938)
+...+.|.....++.+|..|+...|+||||||||.+..+++.... .......++++..+++.. ...++
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~-----------~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES-----------EASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-----------------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcc-----------hHHHHHHHHHHHHhccccccCCce
Confidence 999999999999999999999999999999999999877643211 123456788999999874 56789
Q ss_pred EEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 002307 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAAL 651 (938)
Q Consensus 573 iVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l 651 (938)
+||+|||+++.+|++++| ||+..+++++|+.++|.+||+.++.+.+.. .+.++..++..+.||+++||.++|++|..
T Consensus 156 ~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~ 233 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 233 (322)
T ss_dssp EEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTT
T ss_pred EEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999887654 56679999999999999999999999999
Q ss_pred HHHHhC
Q 002307 652 VAVRKG 657 (938)
Q Consensus 652 ~A~r~~ 657 (938)
.|.++.
T Consensus 234 ~a~r~~ 239 (322)
T 3eie_A 234 QPIRKI 239 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
No 20
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=7.8e-33 Score=296.88 Aligned_cols=258 Identities=52% Similarity=0.890 Sum_probs=222.2
Q ss_pred ccccccccccccccCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 404 GIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
..++.++.... ....+.++|+||+|.+++++++++++..+.++..+..++...++|++|+||||||||+|++++++..+
T Consensus 20 ~~~~~~~~~~~-~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 20 AFSFTKSRARV-LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp ------CCCCC-BCCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccccccccccc-ccCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 34444444433 34458899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh
Q 002307 484 VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (938)
Q Consensus 484 ~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL 563 (938)
.+++.+++.++...+.+.....++.+|+.+....|+++|+||+|.++..+..... ....+....+++++.++
T Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~--------~~~~~~~~~~~~ll~~l 170 (278)
T 1iy2_A 99 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG--------GGNDEREQTLNQLLVEM 170 (278)
T ss_dssp CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC----------------CHHHHHHHHHHHHHH
T ss_pred CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccC--------CcchHHHHHHHHHHHHH
Confidence 9999999998888777777788899999998888999999999999866532110 12345567889999999
Q ss_pred cCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHH
Q 002307 564 DGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLA 643 (938)
Q Consensus 564 Dg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~ 643 (938)
++......++++++||+|+.+|++++|++||++.+++++|+.++|.+||+.+++...+..++++..++..++|++++||+
T Consensus 171 sgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 171 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp TTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred hCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 98877778999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 644 QLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 644 ~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++|++|+..|.+++...|+.+|+.+|+
T Consensus 251 ~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 251 NLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999999998888899999999885
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.9e-33 Score=311.05 Aligned_cols=228 Identities=36% Similarity=0.597 Sum_probs=193.5
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
.....+.++|+||+|++++++.|.+.+.+ +..|+.|.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~ 119 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 119 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHH
Confidence 34556789999999999999999998876 889998876 6688899999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-CCeE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGV 572 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-~~~V 572 (938)
+...+.|.....++.+|..|+...||||||||||.+...+... .........++||..|++... ..++
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~-----------~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-----------ESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-----------------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC-----------cchHHHHHHHHHHHHhhcccccCCCe
Confidence 9998999999999999999999999999999999998776432 122345677889999988754 5689
Q ss_pred EEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 002307 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAAL 651 (938)
Q Consensus 573 iVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l 651 (938)
+||++||+++.+|++++| ||+..+++++|+.++|.+||+.++...+.. .+.++..+++.+.||+|+||.++|++|+.
T Consensus 189 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~ 266 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 266 (355)
T ss_dssp EEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999887653 56779999999999999999999999999
Q ss_pred HHHHh
Q 002307 652 VAVRK 656 (938)
Q Consensus 652 ~A~r~ 656 (938)
.|.++
T Consensus 267 ~a~~~ 271 (355)
T 2qp9_X 267 QPIRK 271 (355)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=9.2e-33 Score=320.75 Aligned_cols=244 Identities=41% Similarity=0.719 Sum_probs=221.7
Q ss_pred CCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~ 498 (938)
..++|++|+|++++++.|.+.+.. +++|+.|..+|+.+++++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 567899999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEec
Q 002307 499 VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 578 (938)
Q Consensus 499 vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAAT 578 (938)
.|.....++.+|..|....||||||||||.+..+++.. ........+++|+..|++.....+++||+||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-----------~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-----------HGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-----------CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-----------cchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 99999999999999999999999999999999876532 1223456788899999988888899999999
Q ss_pred CCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 002307 579 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGH 658 (938)
Q Consensus 579 N~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~ 658 (938)
|+++.+|++++|+|||++.+++++|+.++|.+||+.+++...+..+.++..++..+.||+++||.++|++|+..|.++..
T Consensus 348 n~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (489)
T ss_dssp SCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999988764
Q ss_pred c-----------------ccchhhHHHHHHhhc
Q 002307 659 E-----------------SILSSDMDDAVDRLT 674 (938)
Q Consensus 659 ~-----------------~It~edl~~Ai~rv~ 674 (938)
. .|+.+||..|+..+.
T Consensus 428 ~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ 460 (489)
T 3hu3_A 428 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (489)
T ss_dssp TTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHH
T ss_pred ccccccccccchhhcccCcCCHHHHHHHHHhCC
Confidence 4 356677777766554
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=3.6e-35 Score=311.63 Aligned_cols=255 Identities=50% Similarity=0.821 Sum_probs=219.4
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
+..+.++|++|+|++++++.|.+++.++.+|+.|..++...++++||+||||||||++|+++|++++.|++.++++++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-CCeEEEE
Q 002307 497 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFL 575 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-~~~ViVI 575 (938)
.+.|.+...++.+|..+....|+||||||+|.+...+...... ..+....+.+++++..+++... ..+++||
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~-------~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 155 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV-------SGNDEREQTLNQLLAEMDGFGSENAPVIVL 155 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-----------------CCCSCSSTTTTTTTTTCSSCSCSCCEEE
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccC-------CCchhHHHHHHHHHHHhhCcccCCCCEEEE
Confidence 8888888788899999999999999999999998765321100 0111122346778888887654 3459999
Q ss_pred EecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 002307 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 655 (938)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r 655 (938)
+|||.++.+|++++|+|||+..+++++|+.++|.+||+.+++...+..+.++..++..+.||+|+||.++|++|...|..
T Consensus 156 ~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 156 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235 (268)
T ss_dssp ECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSS
T ss_pred EecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877888899999999999999999999999999987
Q ss_pred hCCcccchhhHHHHHHhhccCCC
Q 002307 656 KGHESILSSDMDDAVDRLTVGPK 678 (938)
Q Consensus 656 ~~~~~It~edl~~Ai~rv~~g~~ 678 (938)
++...|+.+|+.+|+.++.....
T Consensus 236 ~~~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 236 NNQKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp SCCCSCCHHHHHTSCTTCCCCCC
T ss_pred hccCCcCHHHHHHHHHHHhhcch
Confidence 77889999999999888765443
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.98 E-value=7.6e-32 Score=309.34 Aligned_cols=228 Identities=36% Similarity=0.610 Sum_probs=193.2
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-CCCEEEEeCc
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAGS 492 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-g~pfi~vs~s 492 (938)
.....++++|+||+|++++++.|.+.+.+ +++|+.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 34556889999999999999999998875 888888764 35678999999999999999999999999 8999999999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-CCe
Q 002307 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKG 571 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-~~~ 571 (938)
++...+.|.....++.+|..++...||||||||||.+.+.++... .......+++||..++++.. ..+
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~-----------~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE-----------SEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC-----------CGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc-----------ccHHHHHHHHHHHHHhCcccCCCC
Confidence 999999999999999999999999999999999999987664321 11234678899999998753 578
Q ss_pred EEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 002307 572 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (938)
Q Consensus 572 ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~ 650 (938)
++||+|||+++.+|++++| ||+..+++++|+.++|..||+.++.+.+.. .+.++..++..+.||+|+||.++|++|+
T Consensus 272 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~ 349 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDAL 349 (444)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999876653 5678999999999999999999999999
Q ss_pred HHHHHh
Q 002307 651 LVAVRK 656 (938)
Q Consensus 651 l~A~r~ 656 (938)
..|.++
T Consensus 350 ~~a~r~ 355 (444)
T 2zan_A 350 MQPVRK 355 (444)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 998875
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=1.3e-30 Score=280.68 Aligned_cols=245 Identities=35% Similarity=0.586 Sum_probs=206.4
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
..+.++++|++|+|++++++.|.+.+.. +.+|+.|..++ .+++++||+||||||||++|+++|++++.+|+.++|+++
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 3455789999999999999999998876 77888877654 567899999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCC---Ce
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG---KG 571 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~---~~ 571 (938)
...+.|.+...++.+|..+....|+||||||+|.+...++....+ ......+.++..+++.... .+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~-----------~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE-----------ASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----C-----------CSHHHHHHHHHHHHHCC------C
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcch-----------HHHHHHHHHHHHHhcccccCCCCc
Confidence 888888888899999999999999999999999998765432111 1234566788888776443 57
Q ss_pred EEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 002307 572 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (938)
Q Consensus 572 ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~ 650 (938)
++||++||+++.+|++++| ||+..+++++|+.++|..|++.++.+.... .+.++..+++.+.|++++||.++|++|.
T Consensus 160 v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~ 237 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAA 237 (297)
T ss_dssp EEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999876543 3445888999999999999999999999
Q ss_pred HHHHHhCC------------cccchhhHHHHHHhhc
Q 002307 651 LVAVRKGH------------ESILSSDMDDAVDRLT 674 (938)
Q Consensus 651 l~A~r~~~------------~~It~edl~~Ai~rv~ 674 (938)
..|.++.. ..|+.+||..|+.++.
T Consensus 238 ~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 238 LEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp THHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 99988642 4689999999987654
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.8e-30 Score=285.33 Aligned_cols=246 Identities=31% Similarity=0.556 Sum_probs=210.8
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
....+.++|++|+|++++++.|.+.+.+ +.+++.|...+ .+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 75 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l 153 (357)
T 3d8b_A 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153 (357)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence 3455788999999999999999999886 88888876654 678999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc--CCCeE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--TGKGV 572 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~--~~~~V 572 (938)
...+.|.....++.+|..+....|+||||||||.+...++.. ........++++|..+++.. ...++
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~-----------~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG-----------EHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-----------------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC-----------cchHHHHHHHHHHHHHhcccccCCCCE
Confidence 988889889999999999999999999999999998765431 12234567788999998764 34689
Q ss_pred EEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 002307 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAAL 651 (938)
Q Consensus 573 iVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l 651 (938)
+||+|||+++.+|++++| ||+..+++++|+.++|.+|++.++...... .+.++..+++.+.||+++||.++|++|..
T Consensus 223 ~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~ 300 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASL 300 (357)
T ss_dssp EEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred EEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999998765443 34568889999999999999999999999
Q ss_pred HHHHhC------------CcccchhhHHHHHHhhcc
Q 002307 652 VAVRKG------------HESILSSDMDDAVDRLTV 675 (938)
Q Consensus 652 ~A~r~~------------~~~It~edl~~Ai~rv~~ 675 (938)
.+.++. ...|+.+||..|+.++..
T Consensus 301 ~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 301 GPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 888753 357999999999998864
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.7e-32 Score=335.56 Aligned_cols=234 Identities=41% Similarity=0.736 Sum_probs=206.3
Q ss_pred ccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 416 ~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
....+.++|++++|++++++.|.+.+.+ +++++.|..+++.++.++||+||||||||+||+++|++++.+|+.++++++
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 3456789999999999999999999886 788899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEE
Q 002307 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViV 574 (938)
.+.|+|..+..++.+|+.|+...||||||||||.+...++....+ ......+++++||.+||++....+++|
T Consensus 548 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~--------~~~~~~~v~~~LL~~ld~~~~~~~v~v 619 (806)
T 1ypw_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD--------GGGAADRVINQILTEMDGMSTKKNVFI 619 (806)
T ss_dssp TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSH--------HHHHHHHHHHHHHTTCC------CCBC
T ss_pred hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCC--------cchhHHHHHHHHHHHHhcccccCCeEE
Confidence 999999999999999999999999999999999998877542211 234456789999999999988889999
Q ss_pred EEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002307 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~ 654 (938)
|+|||+++.||++++|||||++.|++++|+.++|.+||+.++++.++..++++..+++.+.|||++||.++|++|...|.
T Consensus 620 I~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~ 699 (806)
T 1ypw_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp CCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999998
Q ss_pred HhC
Q 002307 655 RKG 657 (938)
Q Consensus 655 r~~ 657 (938)
++.
T Consensus 700 ~~~ 702 (806)
T 1ypw_A 700 RES 702 (806)
T ss_dssp SCC
T ss_pred HHH
Confidence 764
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=283.96 Aligned_cols=247 Identities=36% Similarity=0.573 Sum_probs=200.9
Q ss_pred cccCCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 415 ~~~~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
.....+.++|++|+|++.+++.|.+.+.. +.+++.|..++ .+++++||+||||||||++|+++|.+++.+|+.++|++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 44566789999999999999999998876 77788777665 55789999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC--CCe
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT--GKG 571 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~--~~~ 571 (938)
+...+.|.....++.+|..++...|+||||||||.+...+.... .......++.|+..+++... ..+
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~-----------~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE-----------HDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-------------------CTHHHHHHHHHHHHHHHC-----C
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc-----------chHHHHHHHHHHHHhhcccccCCCC
Confidence 99999999999999999999999999999999999987654321 11234567788888887654 467
Q ss_pred EEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 002307 572 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (938)
Q Consensus 572 ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~ 650 (938)
++||++||+++.+|++++| ||+..++++.|+.++|.+||+.++...... .+.++..++..+.|+++++|.++|+.|.
T Consensus 253 v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAA 330 (389)
T ss_dssp EEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred EEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999998775433 3346888999999999999999999999
Q ss_pred HHHHHh------------CCcccchhhHHHHHHhhcc
Q 002307 651 LVAVRK------------GHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 651 l~A~r~------------~~~~It~edl~~Ai~rv~~ 675 (938)
..+.++ ....|+.+||..++.++..
T Consensus 331 ~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 331 LGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp THHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred HHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 999887 3356899999999987643
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=5.3e-29 Score=270.66 Aligned_cols=234 Identities=19% Similarity=0.184 Sum_probs=162.2
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHH----HhCCCeEEEEcCcch
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDA 528 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~A----r~~~P~ILfIDEIDa 528 (938)
.+.++|+++||+||||||||++|+++|++++.+|+.++++++.+.+.|.....++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999998 577899999999999
Q ss_pred hhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC-----------cCCCeEEEEEecCCCCcCCccccCCCccceE
Q 002307 529 LATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRDLLDPALLRPGRFDRK 597 (938)
Q Consensus 529 L~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~-----------~~~~~ViVIAATN~pd~LDpALlRpGRFdr~ 597 (938)
+++++++.... ........+.|+..+|+. ....+++||+|||+++.+|++++|||||++.
T Consensus 111 ~~~~~~~~~~~---------~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~ 181 (293)
T 3t15_A 111 GAGRMGGTTQY---------TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181 (293)
T ss_dssp ----------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEE
T ss_pred hcCCCCCCccc---------cchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCcee
Confidence 98755321110 011223456666666633 2456799999999999999999999999999
Q ss_pred EeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHH---HHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 598 IRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLV---QEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 598 I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv---~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
|+ .|+.++|.+|++.++.. .+++...++..+.||++++|..+. ......++++--..+..+.+...+ .
T Consensus 182 i~--~P~~~~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~~~~~---~ 252 (293)
T 3t15_A 182 YW--APTREDRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKL---L 252 (293)
T ss_dssp EE--CCCHHHHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTCHHHH---T
T ss_pred Ee--CcCHHHHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH---H
Confidence 87 47999999999988864 356788899999999999886431 111111111100111222222222 2
Q ss_pred cCCCccCcccccccchhhhHHHHHHHHHHhh
Q 002307 675 VGPKRRGIELGNQGQSRRAATEVGVAMISHL 705 (938)
Q Consensus 675 ~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~l 705 (938)
.+ ......+...+....++||+||+++..-
T Consensus 253 ~~-~~~~~~~~~~~~~~~~l~~~g~~~~~eq 282 (293)
T 3t15_A 253 NS-FDGPPTFEQPKMTIEKLLEYGNMLVQEQ 282 (293)
T ss_dssp SC-SSCSCCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred cC-CCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 21 1223455666788899999999998764
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=8.6e-27 Score=285.34 Aligned_cols=247 Identities=41% Similarity=0.706 Sum_probs=221.7
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHH-hcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
..+.++|+||+|++++++.|.+.+.. +.+|+.|..+++.++.++||+||||||||+||+++|++++.+++.++|+++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999987 99999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEE
Q 002307 497 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 576 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIA 576 (938)
.+.|.....++.+|..+....|+++||||||.+...++.. ........+++++..+++......+++|+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-----------~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~ 345 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-----------HGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-----------CSHHHHHHHHHHHHHHHSSCTTSCCEEEE
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-----------cchHHHHHHHHHHHHhhhhcccccEEEec
Confidence 8889999999999999999999999999999998776432 12334567788899999988888999999
Q ss_pred ecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 002307 577 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 656 (938)
Q Consensus 577 ATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~ 656 (938)
+||+++.+|+++.++|||++.+.++.|+.++|.+|++.++.+..+..+.++..++..+.|++++++..++++|+..+.++
T Consensus 346 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp ECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999988775
Q ss_pred CCc-----------------ccchhhHHHHHHhhcc
Q 002307 657 GHE-----------------SILSSDMDDAVDRLTV 675 (938)
Q Consensus 657 ~~~-----------------~It~edl~~Ai~rv~~ 675 (938)
... .++.+|+..++.....
T Consensus 426 ~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 426 KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp TTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred hccccchhhhccchhhhhhhhhhhhhhhccccccCc
Confidence 432 3566778887776543
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.88 E-value=1.6e-24 Score=249.20 Aligned_cols=213 Identities=22% Similarity=0.289 Sum_probs=146.8
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCchhHH
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVE 496 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~sel~~ 496 (938)
.+...|++|+|++++++.+.+++..++. |..+++++||+||||||||++|+++|++++ .+|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3556799999999999999998877643 455788999999999999999999999999 9999999999999
Q ss_pred HHhhhhhHHHHHHHHHH---HhCCCeEEEEcCcchhhhhhcCccCCcchh----hhh----hhhHHHHHHHHHHHHHhc-
Q 002307 497 VLVGVGSARIRDLFKRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDH----LYN----AATQERETTLNQLLIELD- 564 (938)
Q Consensus 497 ~~vG~~~~~vr~lF~~A---r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~----~~~----~~~~e~~~~LnqLL~eLD- 564 (938)
.+.|..+. ++..|..| +...||||||||+|.+++++.....+..+. ... ..........++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 788999999999999998875432110000 000 000000011233555554
Q ss_pred -CCcCCCeEEEEEecCCCCcCCccccCCCccce--EEeccCC--ChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCH
Q 002307 565 -GFDTGKGVIFLAATNRRDLLDPALLRPGRFDR--KIRIRAP--NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 639 (938)
Q Consensus 565 -g~~~~~~ViVIAATN~pd~LDpALlRpGRFdr--~I~V~lP--d~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSg 639 (938)
+...+..++|++|||+++.+|++++||||||+ .+.++.| +.++|.+|++.+.. .|++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 34445567777999999999999999999999 6677777 45778888765442 268889999999 9
Q ss_pred HHHHHHHHH
Q 002307 640 ARLAQLVQE 648 (938)
Q Consensus 640 aDL~~Lv~e 648 (938)
+||.++|+.
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999965
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=1.9e-21 Score=209.69 Aligned_cols=222 Identities=16% Similarity=0.207 Sum_probs=166.5
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCC---CceEEEEcCCCchHHHHHHHHHHhc-------CCCEEEEeCchhH
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKP---PHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSEFV 495 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~---p~GVLL~GPPGTGKT~LArALA~el-------g~pfi~vs~sel~ 495 (938)
+|+|++++++.|.+++..+..+..+...|+.. +.++||+||||||||++|+++|+.+ ..+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 79999999999999998866677766666544 4469999999999999999999987 3489999999998
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEE
Q 002307 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (938)
Q Consensus 496 ~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVI 575 (938)
..+.|.....++.+|..+ .++||||||+|.+...++... . ....++.|+..++. ...+++||
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~----------~---~~~~~~~Ll~~l~~--~~~~~~~i 173 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD----------Y---GQEAIEILLQVMEN--NRDDLVVI 173 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C----------C---THHHHHHHHHHHHH--CTTTCEEE
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc----------c---cHHHHHHHHHHHhc--CCCCEEEE
Confidence 888888888888888887 467999999999975543210 1 13455666766663 34578888
Q ss_pred EecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-CHHHHHhh-------CCCCCHHHH
Q 002307 576 AATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKN-------LPGWTGARL 642 (938)
Q Consensus 576 AATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-dL~~LA~~-------t~GfSgaDL 642 (938)
++||.++ .++|+|++ ||+..+++++|+.+++.+|++.++......-+. .+..++.. ....+++++
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l 251 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSI 251 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHH
Confidence 8998754 35799998 999999999999999999999999875543222 23444443 222368999
Q ss_pred HHHHHHHHHHHHHh----CCcccchhhHH
Q 002307 643 AQLVQEAALVAVRK----GHESILSSDMD 667 (938)
Q Consensus 643 ~~Lv~eA~l~A~r~----~~~~It~edl~ 667 (938)
.++++.|...+..+ ....++.+++.
T Consensus 252 ~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 252 RNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99999998766544 33455555544
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.85 E-value=9e-21 Score=209.35 Aligned_cols=252 Identities=19% Similarity=0.232 Sum_probs=166.0
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCchhHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFVEV 497 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sel~~~ 497 (938)
+..+|++++|++.+++.+..+...+... ..+++++||+||||||||++|+++|+.++. |++.++|..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4556999999999999988887766542 345689999999999999999999999874 8888887652211
Q ss_pred -------------------------------------------------HhhhhhHHHHHHHHHHHh---------CCCe
Q 002307 498 -------------------------------------------------LVGVGSARIRDLFKRAKV---------NKPS 519 (938)
Q Consensus 498 -------------------------------------------------~vG~~~~~vr~lF~~Ar~---------~~P~ 519 (938)
..|.....++..+..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 112224456666655432 1278
Q ss_pred EEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEec-----------CCCCcCCccc
Q 002307 520 VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT-----------NRRDLLDPAL 588 (938)
Q Consensus 520 ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAAT-----------N~pd~LDpAL 588 (938)
||||||+|.+.. ...+.|+..++. ....++++++. |.++.+++++
T Consensus 192 vl~IDEi~~l~~----------------------~~~~~L~~~le~--~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l 247 (368)
T 3uk6_A 192 VLFIDEVHMLDI----------------------ESFSFLNRALES--DMAPVLIMATNRGITRIRGTSYQSPHGIPIDL 247 (368)
T ss_dssp EEEEESGGGSBH----------------------HHHHHHHHHTTC--TTCCEEEEEESCSEEECBTSSCEEETTCCHHH
T ss_pred eEEEhhccccCh----------------------HHHHHHHHHhhC--cCCCeeeeecccceeeeeccCCCCcccCCHHH
Confidence 999999998742 224455555543 22345555443 3577899999
Q ss_pred cCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHH
Q 002307 589 LRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 667 (938)
Q Consensus 589 lRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~ 667 (938)
++ ||.. +.+++|+.+++.+|++.++...... .+..+..+++.+.+.+++++.++|+.|...|..++...|+.+|+.
T Consensus 248 ~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~ 324 (368)
T 3uk6_A 248 LD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIK 324 (368)
T ss_dssp HT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred Hh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99 9976 8999999999999999988764433 222367788888745899999999999999999999999999999
Q ss_pred HHHHhhccCCCccCcccccccchhhhHHHHHHHHHHhhhh
Q 002307 668 DAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLR 707 (938)
Q Consensus 668 ~Ai~rv~~g~~~~~~~l~~~e~~~iA~HEaGhAvv~~lL~ 707 (938)
+++...... .+ ......+..+...++|.++--...-+.
T Consensus 325 ~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (368)
T 3uk6_A 325 RVYSLFLDE-SR-STQYMKEYQDAFLFNELKGETMDTSLE 362 (368)
T ss_dssp HHHHHSBCH-HH-HHHHHC---------------------
T ss_pred HHHHHhcCH-HH-HHHHHHHhhhhhhhhcCCccccccchh
Confidence 999865421 11 111222223334466666655444444
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.83 E-value=2e-19 Score=196.78 Aligned_cols=215 Identities=20% Similarity=0.259 Sum_probs=166.2
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~v 499 (938)
.+.+|++++|.+++++.+...+...+.+ ..++.++||+||||||||++|+++|++++.+|+.++|+.+.
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 4458999999999999999888765321 23566899999999999999999999999999999987652
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc------------
Q 002307 500 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD------------ 567 (938)
Q Consensus 500 G~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~------------ 567 (938)
....+...+.. ...+++|||||||.+... ..+.|+..++...
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~----------------------~~~~Ll~~l~~~~~~~~~~~~~~~~ 146 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLSPA----------------------IEEVLYPAMEDYRLDIIIGSGPAAQ 146 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCCHH----------------------HHHHHHHHHHTSCC---------CC
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcCHH----------------------HHHHHHHHHHhccchhhcccCcccc
Confidence 22233344432 346789999999997532 1223333333211
Q ss_pred ----CCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHH
Q 002307 568 ----TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARL 642 (938)
Q Consensus 568 ----~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL 642 (938)
...++++|++||+...++++|++ ||+..+.+++|+.+++..+++.++...... .+..+..+++.+.| +++++
T Consensus 147 ~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l 223 (338)
T 3pfi_A 147 TIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIA 223 (338)
T ss_dssp CCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHH
T ss_pred ceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHH
Confidence 01248999999999999999999 999999999999999999999998765543 22336778887766 78999
Q ss_pred HHHHHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 643 AQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 643 ~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
.++++.+...|...+...|+.+++..++....
T Consensus 224 ~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 224 LRLLKRVRDFADVNDEEIITEKRANEALNSLG 255 (338)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHHhC
Confidence 99999999888888888899999999988743
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=3.3e-19 Score=191.16 Aligned_cols=238 Identities=24% Similarity=0.341 Sum_probs=161.4
Q ss_pred CcccCcHHHHHHHHHHHHH-hcCchhhhcc-CCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-HHhhh
Q 002307 425 SDVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVGV 501 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~-Lk~pe~~~~l-G~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-~~vG~ 501 (938)
++|+|++++++.+...+.. +..+.....+ +...+.++||+||||||||++|+++|+.++.+++.++|+++.. .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4589999999999887764 2322211111 1235679999999999999999999999999999999998765 34443
Q ss_pred h-hHHHHHHHHHH-----HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc--------
Q 002307 502 G-SARIRDLFKRA-----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-------- 567 (938)
Q Consensus 502 ~-~~~vr~lF~~A-----r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~-------- 567 (938)
. ...++.++..+ ....++||||||+|.+........ .+.......+.|+..+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~----------~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG----------ADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS----------SHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc----------cchhHHHHHHHHHHHhcCCeEecccccc
Confidence 2 33456665532 112367999999999986543211 11222334566666666431
Q ss_pred CCCeEEEEEe----cCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHh-----------cccccC---CccCHHH
Q 002307 568 TGKGVIFLAA----TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA-----------SKVKMS---DSVDLSS 629 (938)
Q Consensus 568 ~~~~ViVIAA----TN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l-----------~~~~l~---~dvdL~~ 629 (938)
...++++|++ ++.+..+++++++ ||+..+.+++|+.+++.+|++.++ ...... .+..+..
T Consensus 165 ~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (310)
T 1ofh_A 165 KTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 242 (310)
T ss_dssp ECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHH
T ss_pred cCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHH
Confidence 2346788888 5577889999998 999999999999999999998311 111111 1222555
Q ss_pred HHhhC-------CCCCHHHHHHHHHHHHHHHHHh-----CCc-ccchhhHHHHHHhhc
Q 002307 630 YAKNL-------PGWTGARLAQLVQEAALVAVRK-----GHE-SILSSDMDDAVDRLT 674 (938)
Q Consensus 630 LA~~t-------~GfSgaDL~~Lv~eA~l~A~r~-----~~~-~It~edl~~Ai~rv~ 674 (938)
+++.+ .+.+.+++.++++.+...+..+ +.. .|+.+++.+++....
T Consensus 243 l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 243 IAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred HHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 66654 2458999999999987554322 211 499999999987654
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.79 E-value=7.6e-19 Score=190.37 Aligned_cols=218 Identities=22% Similarity=0.281 Sum_probs=162.5
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~v 499 (938)
.+.+|++++|.+.+++.+.+.+...... ...+.++||+||||||||++|++++++++.+++.++|+.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 3457999999999999998888764321 134568999999999999999999999999999999876522
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc-----CCc-------
Q 002307 500 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-----GFD------- 567 (938)
Q Consensus 500 G~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD-----g~~------- 567 (938)
...+...|..+ ...+++|||||||.+... ....+..++.... +..
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-------------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~ 133 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQ-------------------AEEHLYPAMEDFVMDIVIGQGPAARTIR 133 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-------------------HHHHHHHHHHHSEEEECCSSSSSCCCEE
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccccc-------------------hHHHHHHHHHhhhhHHhccccccccccc
Confidence 11222222221 246789999999987532 1223333444321 000
Q ss_pred -CCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHH
Q 002307 568 -TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 568 -~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~L 645 (938)
...++++|++||.+..+++++.+ ||+..+.+++|+.+++..+++.++...+.. .+..+..++..+.| +++++.++
T Consensus 134 ~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~ 210 (324)
T 1hqc_A 134 LELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRL 210 (324)
T ss_dssp EECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHH
T ss_pred cCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHH
Confidence 11357899999999999999998 998899999999999999999998765443 22236778888877 78999999
Q ss_pred HHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 646 VQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 646 v~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
++.+...|...+...|+.+++..++...
T Consensus 211 l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 211 FRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 9999887766667789999999888765
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=1.2e-18 Score=185.74 Aligned_cols=222 Identities=20% Similarity=0.299 Sum_probs=149.2
Q ss_pred cCcccCcHHHHHHHHH----HHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH-HHH
Q 002307 424 FSDVAGIDEAVEELQE----LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV-EVL 498 (938)
Q Consensus 424 F~dVvG~deak~eL~e----iV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~-~~~ 498 (938)
...++|.++..+.+.+ ++..++ ..+..++.++||+||||||||++|+++|++.+.+|+.+++++.. ...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCc
Confidence 3567888887776665 333332 22346678999999999999999999999999999999887522 111
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc-CCCeEEEEEe
Q 002307 499 VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-TGKGVIFLAA 577 (938)
Q Consensus 499 vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~-~~~~ViVIAA 577 (938)
.+.....++.+|..+....++||||||||.+...+..... .. ...++.|...+++.. ...+++||+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~---------~~---~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPR---------FS---NLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTB---------CC---HHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChh---------HH---HHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 1223356788899888888999999999999765432110 11 234455555565543 3467899999
Q ss_pred cCCCCcCCc-cccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCC----CHHHHHHHHHHHHHH
Q 002307 578 TNRRDLLDP-ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGW----TGARLAQLVQEAALV 652 (938)
Q Consensus 578 TN~pd~LDp-ALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~Gf----SgaDL~~Lv~eA~l~ 652 (938)
||.++.+++ .+.+ ||+..|.+++ ..+|.+|.+.......+ .+.++..+++.+.|+ +.+++.++++.|...
T Consensus 174 tn~~~~l~~~~l~~--rf~~~i~~p~--l~~r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 174 TSRKDVLQEMEMLN--AFSTTIHVPN--IATGEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp ESCHHHHHHTTCTT--TSSEEEECCC--EEEHHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred cCChhhcchhhhhc--ccceEEcCCC--ccHHHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 999998888 4554 9998887754 44455555544433333 344578888888886 577777777766533
Q ss_pred HHHhCCcccchhhHHHHHHhh
Q 002307 653 AVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 653 A~r~~~~~It~edl~~Ai~rv 673 (938)
+ .....+++..++...
T Consensus 249 ~-----~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 249 D-----PEYRVRKFLALLREE 264 (272)
T ss_dssp C-----GGGHHHHHHHHHHHT
T ss_pred c-----hHHHHHHHHHHHHHc
Confidence 2 334455555555544
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=2.4e-19 Score=205.49 Aligned_cols=170 Identities=24% Similarity=0.278 Sum_probs=82.4
Q ss_pred CcccCcHHHHHHHHHHHHH-hcCchhhhccCC-CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-HHhhh
Q 002307 425 SDVAGIDEAVEELQELVRY-LKNPELFDKMGI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVGV 501 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~-Lk~pe~~~~lG~-~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-~~vG~ 501 (938)
++|+|++++|+.|...+.. ++.+..+..++. .+++++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4689999999999888754 555555544443 35789999999999999999999999999999999999888 58885
Q ss_pred -hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe-cC
Q 002307 502 -GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA-TN 579 (938)
Q Consensus 502 -~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA-TN 579 (938)
.+..++.+|..|... +++||+|.+.... ......+++++||.+||++.....+ +++ ||
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~--------------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN 154 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA--------------EDVAEERILDALLPPAKNQWGEVEN--HDSHSS 154 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc--------------hhhHHHHHHHHHHHHhhcccccccc--cccccc
Confidence 788899999998765 4579888765332 1223457899999999998766555 455 99
Q ss_pred CCCcCCccccCCCccceEEeccCCChh-hHHHHHHH
Q 002307 580 RRDLLDPALLRPGRFDRKIRIRAPNAK-GRTEILKI 614 (938)
Q Consensus 580 ~pd~LDpALlRpGRFdr~I~V~lPd~e-eR~eILr~ 614 (938)
+++.||++|+||||||+.|+|++|+.. .|.+|+..
T Consensus 155 ~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 155 TRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ------------------------------------
T ss_pred CHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 999999999999999999999999988 78888743
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.76 E-value=1.4e-18 Score=204.25 Aligned_cols=228 Identities=21% Similarity=0.259 Sum_probs=152.1
Q ss_pred CcccCcccCcHHHHHHHHHHHHHh-cCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH---
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYL-KNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE--- 496 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~L-k~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~--- 496 (938)
..-.+|++|++++++.+.+.+..- .+. .. ++..++|+||||||||++|+++|+.++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 344678999999999998765531 111 11 4568999999999999999999999999999999876543
Q ss_pred ------HHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC--
Q 002307 497 ------VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-- 568 (938)
Q Consensus 497 ------~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-- 568 (938)
.++|.....+...|..+....| ||||||||.+...++. ...+.||..||....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~------------------~~~~~LL~~ld~~~~~~ 210 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG------------------DPSSAMLEVLDPEQNSS 210 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC---------------------------CCGGGTCTTTTTB
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc------------------CHHHHHHHHHhhhhcce
Confidence 4566666667778888776666 9999999998765421 123455555553211
Q ss_pred -----------CCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcc-----cccC---C---ccC
Q 002307 569 -----------GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-----VKMS---D---SVD 626 (938)
Q Consensus 569 -----------~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~-----~~l~---~---dvd 626 (938)
..+++||+|||+++.++++|++ ||+ .|.++.|+.+++.+|++.++.. ..+. . +..
T Consensus 211 ~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~ 287 (543)
T 3m6a_A 211 FSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQA 287 (543)
T ss_dssp CCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHH
T ss_pred eecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHH
Confidence 1568999999999999999999 995 7999999999999999987632 2221 1 112
Q ss_pred HHHHHhhCC-CCCHHHHHHHHHHHHHHHHHh------CCcccchhhHHHHHHhhccCC
Q 002307 627 LSSYAKNLP-GWTGARLAQLVQEAALVAVRK------GHESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 627 L~~LA~~t~-GfSgaDL~~Lv~eA~l~A~r~------~~~~It~edl~~Ai~rv~~g~ 677 (938)
+..++.... ..+.++|++.+..++..|..+ +...|+.+++.+++.......
T Consensus 288 l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~~ 345 (543)
T 3m6a_A 288 ILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIFRY 345 (543)
T ss_dssp HHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCCSCC
T ss_pred HHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcccCc
Confidence 455554333 245566666655555444332 344799999999987655443
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.75 E-value=1.6e-17 Score=190.39 Aligned_cols=222 Identities=16% Similarity=0.217 Sum_probs=153.7
Q ss_pred CCcccCccc-CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeCch
Q 002307 420 TGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSE 493 (938)
Q Consensus 420 ~~v~F~dVv-G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~se 493 (938)
+..+|++++ |.+... .+..+......+. . +.+++|+||||||||+||+++++.+ +.+++++++.+
T Consensus 100 ~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp TTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 456899987 644322 2222222233221 2 5689999999999999999999988 88999999998
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+...+.+.........|.......++||||||+|.+..++. . +..+..++..+ ......+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~-------------~----q~~l~~~l~~l---~~~~~~i 230 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG-------------V----QTELFHTFNEL---HDSGKQI 230 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH-------------H----HHHHHHHHHHH---HTTTCEE
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH-------------H----HHHHHHHHHHH---HHCCCeE
Confidence 87665544332222334444433788999999999864310 1 11222222222 2233456
Q ss_pred EEEecCCCCc---CCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhCCCCCHHHHHHHHH
Q 002307 574 FLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQ 647 (938)
Q Consensus 574 VIAATN~pd~---LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t~GfSgaDL~~Lv~ 647 (938)
||++.+.+.. +++++++ ||. ..+.+++|+.++|.+|++..+...++.- +..+..++..+.| +.+++.++++
T Consensus 231 Iitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~ 307 (440)
T 2z4s_A 231 VICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAII 307 (440)
T ss_dssp EEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 6655555554 7899998 886 7899999999999999999887544332 2236778888877 8999999999
Q ss_pred HHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 648 EAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 648 eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
.+...|...+ ..|+.+++.+++....
T Consensus 308 ~~~~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 308 KLLVYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 9999887655 4699999999988765
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.74 E-value=1.1e-17 Score=186.09 Aligned_cols=221 Identities=21% Similarity=0.257 Sum_probs=148.2
Q ss_pred ccCcHHHHHHHHHHHHH-hcCchhh-h-ccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH-HHhhhh
Q 002307 427 VAGIDEAVEELQELVRY-LKNPELF-D-KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVGVG 502 (938)
Q Consensus 427 VvG~deak~eL~eiV~~-Lk~pe~~-~-~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~-~~vG~~ 502 (938)
|+|++++++.+...+.. .+..... . .....++.++||+||||||||++|+++|+.++.||+.++|+++.. .+.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 79999999999888753 2111100 0 111236789999999999999999999999999999999998764 367765
Q ss_pred -hHHHHHHHHHH----HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc----------
Q 002307 503 -SARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD---------- 567 (938)
Q Consensus 503 -~~~vr~lF~~A----r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~---------- 567 (938)
...++.+|..+ ....++||||||||.+...+.....+ .+.......+.||..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~--------~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~ 168 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSIT--------RDVSGEGVQQALLKLIEGTVAAVPPQGGRK 168 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC-----------CHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccc--------cccchHHHHHHHHHHhcCceeeccCccccc
Confidence 55667777765 34467899999999998765432111 12223446777888887431
Q ss_pred ---------CCCeEEEEEecCCC----------Cc-----------------------------------CCccccCCCc
Q 002307 568 ---------TGKGVIFLAATNRR----------DL-----------------------------------LDPALLRPGR 593 (938)
Q Consensus 568 ---------~~~~ViVIAATN~p----------d~-----------------------------------LDpALlRpGR 593 (938)
...++++|+++|.. .. +.++|+. |
T Consensus 169 ~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R 246 (363)
T 3hws_A 169 HPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--R 246 (363)
T ss_dssp -----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--T
T ss_pred cCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--c
Confidence 11334444444431 11 6777777 9
Q ss_pred cceEEeccCCChhhHHHHHHH----Hhcc-------cccC---CccCHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHhC
Q 002307 594 FDRKIRIRAPNAKGRTEILKI----HASK-------VKMS---DSVDLSSYAKN--LPGWTGARLAQLVQEAALVAVRKG 657 (938)
Q Consensus 594 Fdr~I~V~lPd~eeR~eILr~----~l~~-------~~l~---~dvdL~~LA~~--t~GfSgaDL~~Lv~eA~l~A~r~~ 657 (938)
|+..+.+.+|+.+++.+|++. ++.. .... .+..++.++.. ...+..++|+++++++...+..+.
T Consensus 247 ~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 247 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999886 2221 1111 11124555542 334567899999999988876553
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.74 E-value=3.3e-17 Score=180.17 Aligned_cols=225 Identities=20% Similarity=0.187 Sum_probs=160.6
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCc
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGS 492 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~s 492 (938)
..+++++|.++.++.+.+.+.... ....+.+++|+||||||||++++++++++ +.++++++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 345889999999888877654321 12456789999999999999999999988 8899999987
Q ss_pred hhH------HHHh----------hhhhHH-HHHHHHHHHh-CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHH
Q 002307 493 EFV------EVLV----------GVGSAR-IRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 554 (938)
Q Consensus 493 el~------~~~v----------G~~~~~-vr~lF~~Ar~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~ 554 (938)
... .... |..... ...++..... ..|+||||||+|.+...+ ....
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-----------------~~~~ 150 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-----------------GGQD 150 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-----------------THHH
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-----------------CCCh
Confidence 532 1111 111222 3344444433 348899999999986431 0234
Q ss_pred HHHHHHHHhcCCcCCCeEEEEEecCCC---CcCCccccCCCccce-EEeccCCChhhHHHHHHHHhcc--cccC-CccCH
Q 002307 555 TLNQLLIELDGFDTGKGVIFLAATNRR---DLLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASK--VKMS-DSVDL 627 (938)
Q Consensus 555 ~LnqLL~eLDg~~~~~~ViVIAATN~p---d~LDpALlRpGRFdr-~I~V~lPd~eeR~eILr~~l~~--~~l~-~dvdL 627 (938)
.+..++..++....+.++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.++.. .... .+..+
T Consensus 151 ~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~ 228 (387)
T 2v1u_A 151 LLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVV 228 (387)
T ss_dssp HHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHH
T ss_pred HHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 566777766543325678899999987 678899988 8874 8999999999999999998864 1111 22235
Q ss_pred HHHHhhCC---CCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 628 SSYAKNLP---GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 628 ~~LA~~t~---GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
..+++.+. | +++.+.++++.|...|..++...|+.+|+..++....
T Consensus 229 ~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 229 PLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 56666655 6 7899999999999999888888999999999998763
No 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.72 E-value=2.3e-16 Score=158.64 Aligned_cols=201 Identities=22% Similarity=0.247 Sum_probs=145.2
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeCchh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEF 494 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sel 494 (938)
.+.+|++++|.++.++.|.+.+.. ..+.+++|+||||||||++|+++++++ ..+++.++++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 456789999999998888777642 122359999999999999999999875 467888887653
Q ss_pred HHHHhhhhhHHHHHHHHHHH------hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC
Q 002307 495 VEVLVGVGSARIRDLFKRAK------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 568 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~ 568 (938)
.. ...++..+.... ...+++|+|||+|.+... ....+..++.. .
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------------~~~~l~~~l~~-----~ 129 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------------AQAALRRTMEM-----Y 129 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------------HHHHHHHHHHH-----T
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------------HHHHHHHHHHh-----c
Confidence 22 112223232222 246889999999987432 12223333333 2
Q ss_pred CCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHH
Q 002307 569 GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQ 647 (938)
Q Consensus 569 ~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~ 647 (938)
..++.+|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...+.. .+..+..++..+.| +.+.+.++++
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~ 205 (226)
T 2chg_A 130 SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQ 205 (226)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3567788889999999999998 887 89999999999999999888654433 22236677777766 7888888888
Q ss_pred HHHHHHHHhCCcccchhhHHHHHH
Q 002307 648 EAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 648 eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
.++..+ ..|+.+|+.+++.
T Consensus 206 ~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 206 GAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHhcC-----ceecHHHHHHHhc
Confidence 776554 6899999999875
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.72 E-value=8.8e-17 Score=175.51 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=135.3
Q ss_pred CCcccCccc-Cc--HHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch
Q 002307 420 TGVKFSDVA-GI--DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (938)
Q Consensus 420 ~~v~F~dVv-G~--deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se 493 (938)
+..+|++++ |. ..+...+..++. .+ ...+.+++|+||||||||++|+++++.+ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 456899987 53 334444444332 22 1245689999999999999999999988 89999999998
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
+...+.+.........|..... .++||||||+|.+..++. ....+..++..+ ......+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~-----------------~~~~l~~~l~~~---~~~~~~i 134 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKER-----------------TQIEFFHIFNTL---YLLEKQI 134 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCHH-----------------HHHHHHHHHHHH---HHTTCEE
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCChH-----------------HHHHHHHHHHHH---HHCCCeE
Confidence 8776655433222233333332 478999999999864311 111222222222 1223467
Q ss_pred EEEecCCCC---cCCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHH
Q 002307 574 FLAATNRRD---LLDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQ 647 (938)
Q Consensus 574 VIAATN~pd---~LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~ 647 (938)
|+++++.+. .+++++++ ||+ ..+.+++ +.+++.+|++.++...++. ++..+..++..+ | +.+++.++++
T Consensus 135 ii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~ 209 (324)
T 1l8q_A 135 ILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIK 209 (324)
T ss_dssp EEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHH
T ss_pred EEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHH
Confidence 777777766 68899998 886 7889999 9999999999998765443 222367788888 5 8899999999
Q ss_pred HHHHH
Q 002307 648 EAALV 652 (938)
Q Consensus 648 eA~l~ 652 (938)
.+...
T Consensus 210 ~~~~~ 214 (324)
T 1l8q_A 210 LIKLK 214 (324)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 87765
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.70 E-value=5.5e-17 Score=186.56 Aligned_cols=205 Identities=20% Similarity=0.303 Sum_probs=149.7
Q ss_pred CcccCcccCcHHHH---HHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 421 GVKFSDVAGIDEAV---EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 421 ~v~F~dVvG~deak---~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
+.+|++++|+++++ +.|...+..- ...++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT---- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----
Confidence 45799999999998 5666655431 1258999999999999999999999999999998753
Q ss_pred HhhhhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEE
Q 002307 498 LVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (938)
Q Consensus 498 ~vG~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~Vi 573 (938)
.+...++.++..+. ...++||||||||.+.... .+.|+..++. ..++
T Consensus 86 ---~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~----------------------q~~LL~~le~----~~v~ 136 (447)
T 3pvs_A 86 ---SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ----------------------QDAFLPHIED----GTIT 136 (447)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------------------CCHHHHHT----TSCE
T ss_pred ---CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH----------------------HHHHHHHHhc----CceE
Confidence 23344666666654 2467899999999985432 2234444442 3466
Q ss_pred EEEec--CCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccc-------cC-CccCHHHHHhhCCCCCHHHHH
Q 002307 574 FLAAT--NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK-------MS-DSVDLSSYAKNLPGWTGARLA 643 (938)
Q Consensus 574 VIAAT--N~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~-------l~-~dvdL~~LA~~t~GfSgaDL~ 643 (938)
+|++| |....++++|++ |+. ++.+++|+.+++..+++.++.... .. .+..+..+++.+.| +.+++.
T Consensus 137 lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~ll 212 (447)
T 3pvs_A 137 FIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRAL 212 (447)
T ss_dssp EEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHH
T ss_pred EEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHH
Confidence 66666 445589999999 875 778999999999999999987621 11 22236778888766 899999
Q ss_pred HHHHHHHHHHHHh--CCcccchhhHHHHHHhhc
Q 002307 644 QLVQEAALVAVRK--GHESILSSDMDDAVDRLT 674 (938)
Q Consensus 644 ~Lv~eA~l~A~r~--~~~~It~edl~~Ai~rv~ 674 (938)
++++.+...+... +...|+.+++.+++.+..
T Consensus 213 n~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 213 NTLEMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred HHHHHHHHhcccccCCCCccCHHHHHHHHhhhh
Confidence 9999998877423 446899999999987654
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.70 E-value=1.7e-16 Score=162.85 Aligned_cols=206 Identities=14% Similarity=0.154 Sum_probs=140.3
Q ss_pred CCcccCcccCc---HHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch
Q 002307 420 TGVKFSDVAGI---DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (938)
Q Consensus 420 ~~v~F~dVvG~---deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se 493 (938)
+..+|++++|. +.+.+.+..++. . ..+.+++|+||||||||++|+++++++ +.+++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45689999873 344444444432 1 145689999999999999999999876 47889999887
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeE-
Q 002307 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV- 572 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~V- 572 (938)
+...+.. .+. ....+++|+|||+|.+.... .....+..++... .....+
T Consensus 91 ~~~~~~~--------~~~--~~~~~~vliiDe~~~~~~~~-----------------~~~~~l~~~l~~~---~~~~~~~ 140 (242)
T 3bos_A 91 HASISTA--------LLE--GLEQFDLICIDDVDAVAGHP-----------------LWEEAIFDLYNRV---AEQKRGS 140 (242)
T ss_dssp GGGSCGG--------GGT--TGGGSSEEEEETGGGGTTCH-----------------HHHHHHHHHHHHH---HHHCSCE
T ss_pred HHHHHHH--------HHH--hccCCCEEEEeccccccCCH-----------------HHHHHHHHHHHHH---HHcCCCe
Confidence 6543211 111 11357799999999975331 0112233333322 112233
Q ss_pred EEEEecCCCC---cCCccccCCCccc--eEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHHHhhCCCCCHHHHHHHH
Q 002307 573 IFLAATNRRD---LLDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 573 iVIAATN~pd---~LDpALlRpGRFd--r~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~LA~~t~GfSgaDL~~Lv 646 (938)
+|+++++.++ .+++++.+ ||. ..+.+++|+.+++.++++.++...+..- +..+..++..+.| +.+++.+++
T Consensus 141 ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l 217 (242)
T 3bos_A 141 LIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVL 217 (242)
T ss_dssp EEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred EEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHH
Confidence 5554444444 45577877 775 8999999999999999999987654432 2236678888877 899999999
Q ss_pred HHHHHHHHHhCCcccchhhHHHHHH
Q 002307 647 QEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 647 ~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
+.+...|..++ ..|+.+++.+++.
T Consensus 218 ~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 218 DRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 99998886555 5699999998874
No 47
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=3.9e-16 Score=172.55 Aligned_cols=212 Identities=23% Similarity=0.281 Sum_probs=153.4
Q ss_pred cCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----------CCCEEEEeCc
Q 002307 424 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----------GVPFYQMAGS 492 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----------g~pfi~vs~s 492 (938)
.++++|.++.++.+.+.+..... ...+++++|+||||||||++|+++++++ +.+++.++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 48899999999999888765322 1345689999999999999999999987 8999999987
Q ss_pred hhH-H----------HHh-------hhh-hHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHH
Q 002307 493 EFV-E----------VLV-------GVG-SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 553 (938)
Q Consensus 493 el~-~----------~~v-------G~~-~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~ 553 (938)
... . .+. +.. ...+..++..+... ++||+|||+|.+..... .
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~------------------~ 151 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG------------------G 151 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT------------------S
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC------------------C
Confidence 543 1 110 111 12233444444433 34999999999864320 1
Q ss_pred HH-HHHHHHHhcCCcCCCeEEEEEecCCC---CcCCccccCCCccceEEeccCCChhhHHHHHHHHhcc----cccCCcc
Q 002307 554 TT-LNQLLIELDGFDTGKGVIFLAATNRR---DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK----VKMSDSV 625 (938)
Q Consensus 554 ~~-LnqLL~eLDg~~~~~~ViVIAATN~p---d~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~----~~l~~dv 625 (938)
.. +..++... .++.+|++||.+ +.+++++.+ ||+..+.+++|+.++..+|++.++.. ..+. +.
T Consensus 152 ~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~ 222 (384)
T 2qby_B 152 DIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DE 222 (384)
T ss_dssp HHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SH
T ss_pred ceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HH
Confidence 12 33443322 678899999987 678999988 88889999999999999999998863 1222 22
Q ss_pred CHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 626 DLSSYAKNLP---GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 626 dL~~LA~~t~---GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
.+..+++.+. | +.+.+.++++.|...|. +...|+.+|+..++....
T Consensus 223 ~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 223 ILSYIAAISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 3556666655 5 67888899999988875 567899999999988764
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.69 E-value=7.8e-16 Score=168.21 Aligned_cols=223 Identities=18% Similarity=0.216 Sum_probs=141.1
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-------------
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------- 484 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~------------- 484 (938)
..+..+|++++|.+.+++.+.... + .+ .+.++||+||||||||++|+++++.++.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 346778999999999776543221 1 11 2346999999999999999999998862
Q ss_pred --------------------CEEEEeCchhHHHHhhhhhHHHHHHHHHH---------HhCCCeEEEEcCcchhhhhhcC
Q 002307 485 --------------------PFYQMAGSEFVEVLVGVGSARIRDLFKRA---------KVNKPSVIFIDEIDALATRRQG 535 (938)
Q Consensus 485 --------------------pfi~vs~sel~~~~vG~~~~~vr~lF~~A---------r~~~P~ILfIDEIDaL~~~r~~ 535 (938)
+++.+........+.|... +...+..+ ....++||||||||.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH---
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH---
Confidence 2232222111122222100 11112111 1113679999999987533
Q ss_pred ccCCcchhhhhhhhHHHHHHHHHHHHHh----cCC----cCCCeEEEEEecCCCC-cCCccccCCCccceEEeccCC-Ch
Q 002307 536 IFKDTTDHLYNAATQERETTLNQLLIEL----DGF----DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAP-NA 605 (938)
Q Consensus 536 ~~~~~~~~~~~~~~~e~~~~LnqLL~eL----Dg~----~~~~~ViVIAATN~pd-~LDpALlRpGRFdr~I~V~lP-d~ 605 (938)
....+..++..- ... ..+.++++|+|||..+ .++++|++ ||+.++.++.| +.
T Consensus 160 ----------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 160 ----------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDV 221 (350)
T ss_dssp ----------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSH
T ss_pred ----------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcH
Confidence 122333333331 000 1123689999999755 89999999 99999999998 67
Q ss_pred hhHHHHHHHHhcc-------------------------------cccCCccCHHHHHhhCC---CCCHHHHHHHHHHHHH
Q 002307 606 KGRTEILKIHASK-------------------------------VKMSDSVDLSSYAKNLP---GWTGARLAQLVQEAAL 651 (938)
Q Consensus 606 eeR~eILr~~l~~-------------------------------~~l~~dvdL~~LA~~t~---GfSgaDL~~Lv~eA~l 651 (938)
+++.+|++.++.. ..+++ ..+..+++... +-+.+.+.++++.|..
T Consensus 222 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~-~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~ 300 (350)
T 1g8p_A 222 ETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPN-TALYDCAALCIALGSDGLRGELTLLRSARA 300 (350)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCH-HHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 7777888763211 11111 11333433322 2267999999999999
Q ss_pred HHHHhCCcccchhhHHHHHHhhccC
Q 002307 652 VAVRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 652 ~A~r~~~~~It~edl~~Ai~rv~~g 676 (938)
.|..+++..|+.+|+.+|+..+...
T Consensus 301 ~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 301 LAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 9988888899999999999887653
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.69 E-value=2.4e-16 Score=171.62 Aligned_cols=202 Identities=16% Similarity=0.175 Sum_probs=137.1
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~ 498 (938)
-.+.+|++++|.+++++.|.+.+.. ...|+.+|++||||||||++|+++|++++.+++.+++++..
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 3456899999999999888887751 24566789999999999999999999999999999987642
Q ss_pred hhhhhHHHHHHHHHHHhC-----CCeEEEEcCcchhh-hhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeE
Q 002307 499 VGVGSARIRDLFKRAKVN-----KPSVIFIDEIDALA-TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (938)
Q Consensus 499 vG~~~~~vr~lF~~Ar~~-----~P~ILfIDEIDaL~-~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~V 572 (938)
...++..+..+... .++||||||+|.+. .. ....+..++... ..++
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~-------------------~~~~L~~~le~~-----~~~~ 137 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE-------------------SQRHLRSFMEAY-----SSNC 137 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH-------------------HHHHHHHHHHHH-----GGGC
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH-------------------HHHHHHHHHHhC-----CCCc
Confidence 23445544443322 56899999999975 22 122333333332 2467
Q ss_pred EEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcc-------cccC-Cc-cCHHHHHhhCCCCCHHHHH
Q 002307 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-------VKMS-DS-VDLSSYAKNLPGWTGARLA 643 (938)
Q Consensus 573 iVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~-------~~l~-~d-vdL~~LA~~t~GfSgaDL~ 643 (938)
.+|++||.+..+++++++ ||. .+.+++|+.++|.+|++.+... .++. .+ ..+..++..+.| +.+++.
T Consensus 138 ~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~ 213 (324)
T 3u61_B 138 SIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTI 213 (324)
T ss_dssp EEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHH
T ss_pred EEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHH
Confidence 888899999999999999 885 7999999999987776554332 2222 12 336678888766 556666
Q ss_pred HHHHHHHHHHHHhCCcccchhhHHHHHHh
Q 002307 644 QLVQEAALVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 644 ~Lv~eA~l~A~r~~~~~It~edl~~Ai~r 672 (938)
+.++.++ ....|+.+++..++..
T Consensus 214 ~~L~~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 214 GELDSYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHG------GGTCBCC---------
T ss_pred HHHHHHh------ccCCCCHHHHHHHhCC
Confidence 6666554 2345888888776543
No 50
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=2.3e-16 Score=184.11 Aligned_cols=226 Identities=20% Similarity=0.271 Sum_probs=147.2
Q ss_pred cCCCCcccCcccCcHHHHHHHHHHHHHh--cCchhhhccCCC---CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeC
Q 002307 417 DGSTGVKFSDVAGIDEAVEELQELVRYL--KNPELFDKMGIK---PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (938)
Q Consensus 417 ~~~~~v~F~dVvG~deak~eL~eiV~~L--k~pe~~~~lG~~---~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 491 (938)
++-.+.+|++|+|.+++++.|.+.+... ..+..|...|.. +++++||+||||||||++|+++|++++.+++.+++
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 3345668999999999999998887642 122334444433 56899999999999999999999999999999999
Q ss_pred chhHHHHhhhhh-------HHHHHHHHHH-----HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHH
Q 002307 492 SEFVEVLVGVGS-------ARIRDLFKRA-----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 559 (938)
Q Consensus 492 sel~~~~vG~~~-------~~vr~lF~~A-----r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqL 559 (938)
+++......... ..++.+|..+ ....++||||||+|.+....+. ....+..+
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~----------------~l~~L~~~ 174 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------------GVGQLAQF 174 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------------HHHHHHHH
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH----------------HHHHHHHH
Confidence 876443221110 0122333333 2356889999999998653211 11223333
Q ss_pred HHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCC
Q 002307 560 LIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWT 638 (938)
Q Consensus 560 L~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfS 638 (938)
+.. ....+++|+++.....+++ +. |+...+.+++|+.+++.++++..+...++. .+..+..+++.+.| +
T Consensus 175 l~~-----~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-d 244 (516)
T 1sxj_A 175 CRK-----TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-D 244 (516)
T ss_dssp HHH-----CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-C
T ss_pred HHh-----cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 332 2334566655444444443 43 456799999999999999998887654432 22237888888866 5
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 639 GARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 639 gaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
.+.+.++++.+ +. +...|+.+++..++...
T Consensus 245 iR~~i~~L~~~---~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 245 IRQVINLLSTI---ST--TTKTINHENINEISKAW 274 (516)
T ss_dssp HHHHHHHHTHH---HH--HSSCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH---Hh--cCCCCchHHHHHHHHhh
Confidence 55555555443 22 34578888888777643
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.68 E-value=9.8e-16 Score=155.39 Aligned_cols=202 Identities=20% Similarity=0.293 Sum_probs=144.4
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+..|++++|.+..++.|.+.+..- ..++.++|+||||||||+++++++++.+..
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4456899999999999888776531 234579999999999999999999977432
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.++... ......++.++..+. ...+.+|+|||+|.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~------------------- 141 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH------------------- 141 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------------
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-------------------
Confidence 22222221 012233455555432 235789999999986321
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~L 630 (938)
.++.++..++. ...++.+|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++...... .+..+..+
T Consensus 142 ---~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l 213 (250)
T 1njg_A 142 ---SFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 213 (250)
T ss_dssp ---HHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHH
T ss_pred ---HHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 23445555543 24568888889988899999888 64 689999999999999999988754432 22336778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++.+.| +++.+.++++.|...+ ...|+.+++.+++
T Consensus 214 ~~~~~G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 214 ARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHTT-CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred HHHcCC-CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 888877 8999999999886433 3579999998875
No 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=1.3e-15 Score=167.00 Aligned_cols=224 Identities=20% Similarity=0.246 Sum_probs=156.5
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc------CCCEEEEeCchh
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------GVPFYQMAGSEF 494 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el------g~pfi~vs~sel 494 (938)
...+++++|.++.++.|.+.+.... ....+..++|+||||||||+|++++++.+ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3456889999999888877654211 12346689999999999999999999988 889999998643
Q ss_pred H------HHHh----------hhhhHH-HHHHHHHHHhC-CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHH
Q 002307 495 V------EVLV----------GVGSAR-IRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 556 (938)
Q Consensus 495 ~------~~~v----------G~~~~~-vr~lF~~Ar~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~L 556 (938)
. .... +..... ...++...... .|+||+|||+|.+..... ...+
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~------------------~~~l 149 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN------------------DDIL 149 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC------------------STHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc------------------CHHH
Confidence 2 1111 111222 33444444433 389999999999864321 1234
Q ss_pred HHHHHHhcCCcCCCeEEEEEecCCC---CcCCccccCCCccc-eEEeccCCChhhHHHHHHHHhcccccC---CccCHHH
Q 002307 557 NQLLIELDGFDTGKGVIFLAATNRR---DLLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVKMS---DSVDLSS 629 (938)
Q Consensus 557 nqLL~eLDg~~~~~~ViVIAATN~p---d~LDpALlRpGRFd-r~I~V~lPd~eeR~eILr~~l~~~~l~---~dvdL~~ 629 (938)
..++..++.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++...... .+..+..
T Consensus 150 ~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 226 (386)
T 2qby_A 150 YKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKL 226 (386)
T ss_dssp HHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHH
T ss_pred HHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHH
Confidence 5555555443 34578888888876 467788877 665 589999999999999999887632111 1112455
Q ss_pred HHhhCC---CCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 630 YAKNLP---GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 630 LA~~t~---GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
++..+. | +++.+.++++.|...|..++...|+.+++..|+....
T Consensus 227 l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 227 CAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 555554 5 7888889999999999888888999999999998764
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.67 E-value=3.1e-15 Score=165.04 Aligned_cols=217 Identities=23% Similarity=0.276 Sum_probs=157.6
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhh
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGV 501 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~ 501 (938)
.+|++++|.+.+++.+...+..-+.+ ..++..++|+||||||||+|++++|+.+++++...+++.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 47899999999888887766542211 134567999999999999999999999999988887764421
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc-------CCc------C
Q 002307 502 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-------GFD------T 568 (938)
Q Consensus 502 ~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD-------g~~------~ 568 (938)
...+..++.. ...++|+||||+|.+.... ...+...+.... +.. .
T Consensus 90 -~~~l~~~~~~--~~~~~v~~iDE~~~l~~~~-------------------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 90 -QGDMAAILTS--LERGDVLFIDEIHRLNKAV-------------------EELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp -HHHHHHHHHH--CCTTCEEEEETGGGCCHHH-------------------HHHHHHHHHTSCCCC--------------
T ss_pred -HHHHHHHHHH--ccCCCEEEEcchhhcCHHH-------------------HHHHHHHHHhcccceeeccCccccccccc
Confidence 1123333322 2356799999999875321 111211111110 000 0
Q ss_pred CCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCc-cCHHHHHhhCCCCCHHHHHHHHH
Q 002307 569 GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQ 647 (938)
Q Consensus 569 ~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~d-vdL~~LA~~t~GfSgaDL~~Lv~ 647 (938)
-..+.++++||++..|++.+++ ||...+.+++|+.+++.+|++..........+ ..+..+|+.+.| +++.+.++++
T Consensus 148 l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~ 224 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTK 224 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 1246777899999999999999 99989999999999999999988875544322 236778888888 7899999999
Q ss_pred HHHHHHHHhCCcccchhhHHHHHHhhcc
Q 002307 648 EAALVAVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 648 eA~l~A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
.+...|..++...|+.+++.+++.....
T Consensus 225 ~~~~~a~~~~~~~It~~~v~~al~~~~~ 252 (334)
T 1in4_A 225 RVRDMLTVVKADRINTDIVLKTMEVLNI 252 (334)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHhCC
Confidence 9999988888889999999999998643
No 54
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.67 E-value=3.6e-16 Score=170.96 Aligned_cols=217 Identities=18% Similarity=0.170 Sum_probs=148.0
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh--HHHHhh
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF--VEVLVG 500 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel--~~~~vG 500 (938)
.+++|+|++++++.+...+.. ++++||+||||||||++|+++|+.++.+++.+++... ...+.|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 357899999998877655432 2489999999999999999999999999999887421 122222
Q ss_pred hhhHH-HHHHHHHHHhCC---CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHh----cC--CcCCC
Q 002307 501 VGSAR-IRDLFKRAKVNK---PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL----DG--FDTGK 570 (938)
Q Consensus 501 ~~~~~-vr~lF~~Ar~~~---P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eL----Dg--~~~~~ 570 (938)
..... ....|. .... .+||||||+|.+... ....+.+.+.+- ++ ...+.
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~-------------------~~~~Ll~~l~~~~~~~~g~~~~~~~ 149 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK-------------------VQSALLECMQEKQVTIGDTTYPLDN 149 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH-------------------HHHHHHHHHHHSEEEETTEEEECCS
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCCHH-------------------HHHHHHHHHhcCceeeCCEEEECCC
Confidence 21000 000000 0112 379999999986432 122233333331 11 12345
Q ss_pred eEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-----------------------
Q 002307 571 GVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS----------------------- 622 (938)
Q Consensus 571 ~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~----------------------- 622 (938)
+++||+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.++......
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 227 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTI 227 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBC
T ss_pred CEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCC
Confidence 678888888544 38999999 999999999999999999999987642110
Q ss_pred CccCHHHHHhh-------------------CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccC
Q 002307 623 DSVDLSSYAKN-------------------LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 623 ~dvdL~~LA~~-------------------t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g 676 (938)
++..+..++.. ..|.|++.+.++++.|...|..+++..|+.+|+.+++..+...
T Consensus 228 ~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 228 SESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp CHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 01012222221 1266899999999999999999999999999999999988754
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.66 E-value=3e-16 Score=175.13 Aligned_cols=239 Identities=18% Similarity=0.203 Sum_probs=143.2
Q ss_pred CcccCcHHHHHHHHHHHHH-hcCchhh-----------------hccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCE
Q 002307 425 SDVAGIDEAVEELQELVRY-LKNPELF-----------------DKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF 486 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~-Lk~pe~~-----------------~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pf 486 (938)
++|+|++++|+.|...+.. ++..... ..-...++.++||+||||||||++|+++|+.++.||
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999887732 1111100 001234567899999999999999999999999999
Q ss_pred EEEeCchhH-HHHhhhh-hHHHHHHHHHHH----hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHH
Q 002307 487 YQMAGSEFV-EVLVGVG-SARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLL 560 (938)
Q Consensus 487 i~vs~sel~-~~~vG~~-~~~vr~lF~~Ar----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL 560 (938)
+.++|+.+. ..+.|.. ...+..++..+. ...++||||||+|.+...+...... .+.......+.|+
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~--------~~~~~~~~~~~Ll 172 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSIT--------RDVSGEGVQQALL 172 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC----------------------CHHHHHHHH
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCcee--------cccchHHHHHHHH
Confidence 999998865 3445543 334555554332 2357899999999998764321110 1111123456666
Q ss_pred HHhcCCc-------------------CCCeEEEEEecCCC----------------------------------------
Q 002307 561 IELDGFD-------------------TGKGVIFLAATNRR---------------------------------------- 581 (938)
Q Consensus 561 ~eLDg~~-------------------~~~~ViVIAATN~p---------------------------------------- 581 (938)
..|++.. ...++++|++||..
T Consensus 173 ~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 252 (376)
T 1um8_A 173 KIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLV 252 (376)
T ss_dssp HHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHH
T ss_pred HHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHh
Confidence 6666431 12456777777621
Q ss_pred -CcCCccccCCCccceEEeccCCChhhHHHHHHH----Hhc---------ccccC-CccCHHHHHhhCC--CCCHHHHHH
Q 002307 582 -DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKI----HAS---------KVKMS-DSVDLSSYAKNLP--GWTGARLAQ 644 (938)
Q Consensus 582 -d~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~----~l~---------~~~l~-~dvdL~~LA~~t~--GfSgaDL~~ 644 (938)
..+.+++++ ||+..+.+++++.++...|+.. ++. ...+. .+..+..++.... ..+.++|.+
T Consensus 253 ~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~ 330 (376)
T 1um8_A 253 TYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRA 330 (376)
T ss_dssp HTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHH
T ss_pred hcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHH
Confidence 124566666 8989999999999999998862 211 11111 1112455665532 247899999
Q ss_pred HHHHHHHHHHHhCC------cccchhhHHHHHHhh
Q 002307 645 LVQEAALVAVRKGH------ESILSSDMDDAVDRL 673 (938)
Q Consensus 645 Lv~eA~l~A~r~~~------~~It~edl~~Ai~rv 673 (938)
+++.+...+..+.. ..|+.+++..+...+
T Consensus 331 ~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 331 IIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCE
T ss_pred HHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCce
Confidence 99999887665422 247777776644433
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=1.5e-16 Score=156.43 Aligned_cols=159 Identities=22% Similarity=0.336 Sum_probs=113.8
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEe
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 490 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs 490 (938)
..+|++++|.++.++.+.+.+ .. ..+.+++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVL---QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHH---hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 346899999999877766543 21 345689999999999999999999986 78899999
Q ss_pred CchhHH--HHhhhhhHHHHHHHHHHH-hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc
Q 002307 491 GSEFVE--VLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (938)
Q Consensus 491 ~sel~~--~~vG~~~~~vr~lF~~Ar-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~ 567 (938)
+..+.. .+.+.....++.++..+. ...++||+|||+|.+...+.... .......+..++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-----------~~~~~~~l~~~~~------ 148 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-----------AMDAGNMLKPALA------ 148 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------------CCCCHHHHHHHHH------
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-----------hHHHHHHHHHhhc------
Confidence 877652 234445556777777653 45688999999999875432110 0111223333332
Q ss_pred CCCeEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHH
Q 002307 568 TGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEIL 612 (938)
Q Consensus 568 ~~~~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eIL 612 (938)
..++.+|++||.++ .+++++++ ||+ .+.+++|+.+++.+||
T Consensus 149 -~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 149 -RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred -cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 24677888888876 78999999 998 6999999999998876
No 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.65 E-value=6.3e-16 Score=166.48 Aligned_cols=203 Identities=23% Similarity=0.313 Sum_probs=136.4
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH-----
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE----- 496 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~----- 496 (938)
++++|++.+++.+...+......- .-..++..++||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468899999999988877532100 0011334579999999999999999999987 66799999876532
Q ss_pred HHhhhhh-----HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc----
Q 002307 497 VLVGVGS-----ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD---- 567 (938)
Q Consensus 497 ~~vG~~~-----~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~---- 567 (938)
.+.|... .....+.........+||||||+|.+... ..+.|+..++...
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~----------------------~~~~Ll~~le~~~~~~~ 151 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPD----------------------VFNILLQMLDDGRLTDS 151 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHH----------------------HHHHHHHHHHHSEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHH----------------------HHHHHHHHHhcCEEEcC
Confidence 2332110 00012222333445689999999987432 2233444433211
Q ss_pred -----CCCeEEEEEecCC--------------------------CCcCCccccCCCccceEEeccCCChhhHHHHHHHHh
Q 002307 568 -----TGKGVIFLAATNR--------------------------RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 616 (938)
Q Consensus 568 -----~~~~ViVIAATN~--------------------------pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l 616 (938)
.-.++++|+|||. ...+++++++ ||+..+.+.+|+.+++..|++.++
T Consensus 152 ~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 152 HGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp TSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHT
T ss_pred CCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 0136779999998 4578888987 999999999999999999999887
Q ss_pred cccc-------cC---CccCHHHHHhhCC--CCCHHHHHHHHHHHHHHHH
Q 002307 617 SKVK-------MS---DSVDLSSYAKNLP--GWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 617 ~~~~-------l~---~dvdL~~LA~~t~--GfSgaDL~~Lv~eA~l~A~ 654 (938)
.... .. .+..+..++.... ..+.++|.++++++...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 230 SYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 6531 11 1122556666544 4578999999999887664
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.64 E-value=9.7e-16 Score=186.10 Aligned_cols=222 Identities=19% Similarity=0.270 Sum_probs=159.7
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeC
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 491 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~ 491 (938)
-+|++++|.++.++.+.+++. ...+.++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 378999999998777766542 1245689999999999999999999986 667888887
Q ss_pred chhH--HHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCC
Q 002307 492 SEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 569 (938)
Q Consensus 492 sel~--~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~ 569 (938)
..+. ..+.|..+.+++.+|..+....++||||||+|.+.+.+.... .. ....+.|. .+-..
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~----------~~---~~~~~~L~----~~l~~ 313 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG----------GQ---VDAANLIK----PLLSS 313 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS----------CH---HHHHHHHS----SCSSS
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc----------ch---HHHHHHHH----HHHhC
Confidence 7665 245677788899999999888899999999999976543210 01 11122222 22234
Q ss_pred CeEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccc----cC-CccCHHHHHhhC-----
Q 002307 570 KGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK----MS-DSVDLSSYAKNL----- 634 (938)
Q Consensus 570 ~~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~----l~-~dvdL~~LA~~t----- 634 (938)
..+.+|++||.++ .+|++|.| ||+ .+.++.|+.++|.+||+.++.... .. .+..+..++..+
T Consensus 314 ~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~ 390 (758)
T 1r6b_X 314 GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIN 390 (758)
T ss_dssp CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcc
Confidence 6788899998754 57899998 998 799999999999999998775422 11 111244444443
Q ss_pred CCCCHHHHHHHHHHHHHHHHH----hCCcccchhhHHHHHHhhcc
Q 002307 635 PGWTGARLAQLVQEAALVAVR----KGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 635 ~GfSgaDL~~Lv~eA~l~A~r----~~~~~It~edl~~Ai~rv~~ 675 (938)
..+.+..+..++++|+..+.. .....|+.+|+..++.+...
T Consensus 391 ~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 391 DRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSC
T ss_pred cccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcC
Confidence 345677889999999877654 24567999999999988753
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=2.1e-15 Score=164.76 Aligned_cols=208 Identities=20% Similarity=0.234 Sum_probs=144.4
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC------CCEEEEeC
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG------VPFYQMAG 491 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg------~pfi~vs~ 491 (938)
.-.+.+|++++|.+++++.|...+. .. .. .++||+||||||||++|+++|+.++ ..++.+++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~---~~--------~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLK---SA--------NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTT---CT--------TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHh---cC--------CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 3456789999999999887766542 11 12 3499999999999999999999854 46888887
Q ss_pred chhHHHHhhhhhHHHHHHHHHHH----------------hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHH
Q 002307 492 SEFVEVLVGVGSARIRDLFKRAK----------------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (938)
Q Consensus 492 sel~~~~vG~~~~~vr~lF~~Ar----------------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~ 555 (938)
++... ...++..+.... ...+.||||||+|.+....
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~---------------------- 149 (353)
T 1sxj_D 98 SDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA---------------------- 149 (353)
T ss_dssp SSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH----------------------
T ss_pred ccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHH----------------------
Confidence 65311 111222221111 1245699999999875321
Q ss_pred HHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhC
Q 002307 556 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNL 634 (938)
Q Consensus 556 LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t 634 (938)
.+.|+..++.. .....+|.+||.++.+++++++ |+. .+.+++|+.++...+++..+...++. ++..+..++..+
T Consensus 150 ~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~ 224 (353)
T 1sxj_D 150 QSALRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDIS 224 (353)
T ss_dssp HHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 12333334322 2345566688999999999998 876 88999999999999999888654432 223367788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCc-ccchhhHHHHHH
Q 002307 635 PGWTGARLAQLVQEAALVAVRKGHE-SILSSDMDDAVD 671 (938)
Q Consensus 635 ~GfSgaDL~~Lv~eA~l~A~r~~~~-~It~edl~~Ai~ 671 (938)
.| +.+.+.++++.+...+.+.+.. .|+.+++.+++.
T Consensus 225 ~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 225 AG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp SS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred CC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 77 6888888888888776554433 799999888765
No 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=5.9e-15 Score=162.85 Aligned_cols=220 Identities=16% Similarity=0.159 Sum_probs=155.8
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCc--eEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCchhH
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPH--GVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFV 495 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~--GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sel~ 495 (938)
..+++++|.++.++.|.+.+...... ..+. .++|+||||||||++++++++.+ +.++++++|....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 34588999999999998877653111 2234 89999999999999999999988 6788999876532
Q ss_pred ------HHHh----------hhhhHHHH-HHHHHHH-hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHH
Q 002307 496 ------EVLV----------GVGSARIR-DLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (938)
Q Consensus 496 ------~~~v----------G~~~~~vr-~lF~~Ar-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Ln 557 (938)
.... +.....+. .+..... ...|.||+|||+|.+. ...++
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~----------------------~~~~~ 143 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA----------------------PDILS 143 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC----------------------HHHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc----------------------hHHHH
Confidence 1111 11111222 2222222 2458899999999862 12344
Q ss_pred HHHHHhcCCcC--CCeEEEEEecCCC---CcCCccccCCCccce-EEeccCCChhhHHHHHHHHhcccc---cCCccCHH
Q 002307 558 QLLIELDGFDT--GKGVIFLAATNRR---DLLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASKVK---MSDSVDLS 628 (938)
Q Consensus 558 qLL~eLDg~~~--~~~ViVIAATN~p---d~LDpALlRpGRFdr-~I~V~lPd~eeR~eILr~~l~~~~---l~~dvdL~ 628 (938)
.|+..++.... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.... .-.+..+.
T Consensus 144 ~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (389)
T 1fnn_A 144 TFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQ 221 (389)
T ss_dssp HHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHH
T ss_pred HHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 55555543222 2478888888887 577888877 7775 899999999999999998876421 11223366
Q ss_pred HHHhhC---------CCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 629 SYAKNL---------PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 629 ~LA~~t---------~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
.+++.+ .| +++.+.++++.|...|..++...|+.+++..++....
T Consensus 222 ~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 222 MIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 677777 45 7899999999999999888888999999999998775
No 61
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.5e-15 Score=165.72 Aligned_cols=160 Identities=6% Similarity=0.069 Sum_probs=116.2
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEeCchhHH
Q 002307 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGSEFVE 496 (938)
Q Consensus 427 VvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs~sel~~ 496 (938)
+.|.++..+.|...+... +....|.+++|+||||||||++++++++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 667777777777666542 122467789999999999999999999988 35688999865432
Q ss_pred ----------HHhh------hhhHHHHHHHHHH--HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHH
Q 002307 497 ----------VLVG------VGSARIRDLFKRA--KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQ 558 (938)
Q Consensus 497 ----------~~vG------~~~~~vr~lF~~A--r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~Lnq 558 (938)
.+.| .....++..|... ....++||+|||+|.+. . +..+..
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~--------------------q~~L~~ 152 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S--------------------EKILQY 152 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C--------------------THHHHH
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c--------------------chHHHH
Confidence 2222 2345677778764 34678899999999986 1 134555
Q ss_pred HHHHhcCCcCCCeEEEEEecCCCCc----CCccccCCCccc-eEEeccCCChhhHHHHHHHHhccc
Q 002307 559 LLIELDGFDTGKGVIFLAATNRRDL----LDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKV 619 (938)
Q Consensus 559 LL~eLDg~~~~~~ViVIAATN~pd~----LDpALlRpGRFd-r~I~V~lPd~eeR~eILr~~l~~~ 619 (938)
++.... ....+++||+.+|..+. +++++.+ ||. +.|.|++++.++..+|++.++...
T Consensus 153 l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 153 FEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp HHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 555432 24567899999998764 4556666 886 689999999999999999998764
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.60 E-value=6.3e-15 Score=170.13 Aligned_cols=205 Identities=19% Similarity=0.270 Sum_probs=139.2
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEe
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 490 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs 490 (938)
.-+|++|+|.++.++.+.+++.. ....++||+||||||||++|+++|..+ +.+|+.++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 34689999999998887766542 234589999999999999999999986 78899998
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCC
Q 002307 491 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (938)
Q Consensus 491 ~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~ 570 (938)
++ ..+.|..+.+++.+|..+....|+||||| + . ....+.|+..|+ ..
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~--------------------~~a~~~L~~~L~----~g 290 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-A--------------------IDASNILKPSLA----RG 290 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------------------CCCTT----SS
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-c--------------------hhHHHHHHHhhc----CC
Confidence 87 66778888889999999998889999999 1 0 011233333332 45
Q ss_pred eEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc-----CHHHHHhhC-----C
Q 002307 571 GVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-----DLSSYAKNL-----P 635 (938)
Q Consensus 571 ~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv-----dL~~LA~~t-----~ 635 (938)
.+.+|++||.++ .+|+++.| ||. .|.|+.|+.+++..||+.++.......++ .+..++..+ .
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence 789999999987 68999999 998 59999999999999999887663222111 234444432 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCC-cccchhhHHHHHHhh
Q 002307 636 GWTGARLAQLVQEAALVAVRKGH-ESILSSDMDDAVDRL 673 (938)
Q Consensus 636 GfSgaDL~~Lv~eA~l~A~r~~~-~~It~edl~~Ai~rv 673 (938)
.+.+.....++.+|+..+..+.. .......++..+.++
T Consensus 368 ~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 368 RFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 34566788888888876654433 233445555555544
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.60 E-value=3.8e-15 Score=159.99 Aligned_cols=202 Identities=22% Similarity=0.242 Sum_probs=141.5
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeCc
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGS 492 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~s 492 (938)
+-.+.+|++++|++++++.|.+.+. . ...+ ++||+||||||||++|+++++.+ +.+++.++++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 3456689999999999888766542 1 1223 49999999999999999999986 4467888887
Q ss_pred hhHHHHhhhhhHHHHHHHHHHH------hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC
Q 002307 493 EFVEVLVGVGSARIRDLFKRAK------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 566 (938)
Q Consensus 493 el~~~~vG~~~~~vr~lF~~Ar------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~ 566 (938)
+... ...++..+.... ...+.||+|||+|.+... ..+.|+..++.
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~----------------------~~~~L~~~le~- 128 (319)
T 2chq_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD----------------------AQAALRRTMEM- 128 (319)
T ss_dssp STTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH----------------------HHHTTGGGTSS-
T ss_pred cccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH----------------------HHHHHHHHHHh-
Confidence 5321 111222222221 145789999999987432 23345555543
Q ss_pred cCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHH
Q 002307 567 DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQL 645 (938)
Q Consensus 567 ~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~L 645 (938)
...++++|++||.++.+++++.+ |+. .+.+++|+.+++.++++.++...+.. .+..+..++..+.| +.+.+.++
T Consensus 129 -~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~ 203 (319)
T 2chq_A 129 -YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINA 203 (319)
T ss_dssp -SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHH
T ss_pred -cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 34567888889999999999998 775 89999999999999999988765543 22236677777766 67777777
Q ss_pred HHHHHHHHHHhCCcccchhhHHHHH
Q 002307 646 VQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 646 v~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
++.+... ...|+.+++..++
T Consensus 204 l~~~~~~-----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 204 LQGAAAI-----GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHS-----SSCBCHHHHHHHT
T ss_pred HHHHHHc-----CCCCCHHHHHHHH
Confidence 7665432 3468888877664
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=4.8e-15 Score=180.27 Aligned_cols=199 Identities=23% Similarity=0.270 Sum_probs=135.8
Q ss_pred cCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhh
Q 002307 424 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVG 500 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG 500 (938)
.++|+|++++++.+.+.+...+.... -..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+.+..
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~---~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK---DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS---CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 36799999999999988876432110 001222369999999999999999999987 789999999998765544
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC---------cCCCe
Q 002307 501 VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---------DTGKG 571 (938)
Q Consensus 501 ~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~---------~~~~~ 571 (938)
. ...+....+...++||||||||.+... ..+.|+..|+.- ....+
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~~~----------------------~~~~Ll~~le~g~~~~~~g~~~~~~~ 620 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAHPD----------------------VFNILLQVLEDGRLTDSKGRTVDFRN 620 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSCHH----------------------HHHHHHHHHHHSBCC-----CCBCTT
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccCHH----------------------HHHHHHHHhccCeEEcCCCCEeccCC
Confidence 3 122333445566789999999986422 233444444321 12346
Q ss_pred EEEEEecCCCCc------------CCccccCCCccceEEeccCCChhhHHHHHHHHhcccc-------cCCcc---CHHH
Q 002307 572 VIFLAATNRRDL------------LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK-------MSDSV---DLSS 629 (938)
Q Consensus 572 ViVIAATN~pd~------------LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~-------l~~dv---dL~~ 629 (938)
++||+|||.+.. +.|++++ ||+..|.+++|+.+++.+|++.++.... ....+ .+..
T Consensus 621 ~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 698 (758)
T 3pxi_A 621 TILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAK 698 (758)
T ss_dssp CEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHH
T ss_pred eEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHH
Confidence 799999997543 7888887 9999999999999999999998876531 11112 2455
Q ss_pred HHhh--CCCCCHHHHHHHHHHHHHHH
Q 002307 630 YAKN--LPGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 630 LA~~--t~GfSgaDL~~Lv~eA~l~A 653 (938)
++.. ...++.++|+++++++...+
T Consensus 699 l~~~~~~~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 699 VAEEGVDLEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp HHGGGCCTTTTTTTHHHHHHHHTHHH
T ss_pred HHHhCCCCCCCChHHHHHHHHHHHHH
Confidence 5553 33456788999888776554
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=8e-15 Score=180.75 Aligned_cols=203 Identities=20% Similarity=0.289 Sum_probs=135.4
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEe
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 490 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs 490 (938)
.-+|++++|.++.++.+.+++. . ..+++++|+||||||||++|+++|+++ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 3478999999988777666542 1 234579999999999999999999987 88999999
Q ss_pred CchhH--HHHhhhhhHHHHHHHHHHHhC-CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc
Q 002307 491 GSEFV--EVLVGVGSARIRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (938)
Q Consensus 491 ~sel~--~~~vG~~~~~vr~lF~~Ar~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~ 567 (938)
++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+.+... ........+..++ +
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----------g~~~~~~~L~~~l---~--- 296 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-----------GAVDAGNMLKPAL---A--- 296 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------------HHHH---H---
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-----------chHHHHHHHHHHH---h---
Confidence 98886 457788888899999998875 78999999999997554221 0111122233333 2
Q ss_pred CCCeEEEEEecCCCC----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-----ccCHHHHHhh-----
Q 002307 568 TGKGVIFLAATNRRD----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-----SVDLSSYAKN----- 633 (938)
Q Consensus 568 ~~~~ViVIAATN~pd----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-----dvdL~~LA~~----- 633 (938)
...+.+|++||.++ .+|+++.| ||+. |.++.|+.+++.+||+.++....... +..+..++..
T Consensus 297 -~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 297 -RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp -TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred -CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhc
Confidence 24678889998765 47999999 9985 99999999999999998776432111 1123344433
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Q 002307 634 LPGWTGARLAQLVQEAALVAVRK 656 (938)
Q Consensus 634 t~GfSgaDL~~Lv~eA~l~A~r~ 656 (938)
+.++.+.....++.+|+..+..+
T Consensus 373 ~~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 373 TERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp CSSCTHHHHHHHHHHHHHHHHHT
T ss_pred ccccChHHHHHHHHHHHHHHHhh
Confidence 45677889999999998777654
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.59 E-value=2.7e-14 Score=157.13 Aligned_cols=202 Identities=20% Similarity=0.291 Sum_probs=144.8
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCC--------------
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 485 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~p-------------- 485 (938)
.+.+|++++|.+++++.|.+.+.. .+.++.+||+||||||||++|+++|+.+++.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 345789999999999988887653 1345679999999999999999999987542
Q ss_pred ----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 486 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 486 ----------fi~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
++.+++.. ..+...++.++..+.. ..+.||+|||+|.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~------------------- 134 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH------------------- 134 (373)
T ss_dssp HHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-------------------
T ss_pred HHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH-------------------
Confidence 22222211 0122346666666542 34689999999986421
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCC-ccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~-dvdL~~L 630 (938)
..+.|+..++. ...++++|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++...+... +..+..+
T Consensus 135 ---~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l 206 (373)
T 1jr3_A 135 ---SFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 (373)
T ss_dssp ---HHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHH
T ss_pred ---HHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23455555553 34577888888888889999987 75 6899999999999999999887654432 2236678
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 631 A~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+..+.| +.+++.++++.+...+ ...|+.+++..++
T Consensus 207 ~~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 207 ARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 888877 8999999998876433 3568888887665
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=7.4e-15 Score=178.64 Aligned_cols=189 Identities=20% Similarity=0.273 Sum_probs=134.9
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEe
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 490 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs 490 (938)
.-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|+.+ +.+++.++
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred hCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 34688999999998888776531 334589999999999999999999986 88898888
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCC
Q 002307 491 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (938)
Q Consensus 491 ~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~ 570 (938)
+ ...+.|..+.+++.+|..+....|+||||| +. ....+.|+..++ ..
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~---------------------~~~~~~L~~~l~----~~ 290 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------------------IDASNILKPSLA----RG 290 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------------------CCCTT----SS
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc---------------------hhHHHHHHHHHh----cC
Confidence 7 455788888899999999999999999999 10 011233333332 45
Q ss_pred eEEEEEecCCCC-----cCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccC-----HHHHHhh-----CC
Q 002307 571 GVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-----LSSYAKN-----LP 635 (938)
Q Consensus 571 ~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvd-----L~~LA~~-----t~ 635 (938)
.+.+|++||..+ .+|++++| || ..|.|+.|+.+++.+||+.++........++ +..++.. +.
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~ 367 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred CEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccc
Confidence 789999999988 79999999 99 4699999999999999998876643322222 3333332 44
Q ss_pred CCCHHHHHHHHHHHHHHHHHhC
Q 002307 636 GWTGARLAQLVQEAALVAVRKG 657 (938)
Q Consensus 636 GfSgaDL~~Lv~eA~l~A~r~~ 657 (938)
++.+.....++.+|+..+..+.
T Consensus 368 ~~~p~~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 368 RFLPDKAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHT
T ss_pred CcCCcHHHHHHHHHHHHHHhhc
Confidence 6778888899999887765543
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=2.3e-14 Score=154.18 Aligned_cols=201 Identities=18% Similarity=0.215 Sum_probs=141.9
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeCchh
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEF 494 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sel 494 (938)
.+.+|++++|.+++++.|.+.+.. .+.+. +||+||||||||++|+++++.+ +.+++.+++++.
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 456799999999999888777541 12344 9999999999999999999986 456788887653
Q ss_pred HHHHhhhhhHHHHHHHHHHH-------hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc
Q 002307 495 VEVLVGVGSARIRDLFKRAK-------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (938)
Q Consensus 495 ~~~~vG~~~~~vr~lF~~Ar-------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~ 567 (938)
. +...++.++.... ...++||+|||+|.+... ..+.|+..++.
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~----------------------~~~~L~~~le~-- 133 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG----------------------AQQALRRTMEL-- 133 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH----------------------HHHTTHHHHHH--
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH----------------------HHHHHHHHHhc--
Confidence 1 1234555555443 234789999999987432 12233333332
Q ss_pred CCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHH
Q 002307 568 TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 568 ~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv 646 (938)
...++.+|.+||.++.+++++.+ |+. .+.+++|+.++..++++.++...+.. .+..+..++..+.| +.+.+.+++
T Consensus 134 ~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l 209 (323)
T 1sxj_B 134 YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNL 209 (323)
T ss_dssp TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 23556777788889999999988 765 89999999999999999888654433 22236677887766 677777777
Q ss_pred HHHHHHHHHhCCcccchhhHHHHHH
Q 002307 647 QEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 647 ~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
+.+.... ..|+.+++.+++.
T Consensus 210 ~~~~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 210 QSTVAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHH-----SSBCHHHHHHHHT
T ss_pred HHHHhcC-----CCcCHHHHHHHHC
Confidence 6655321 4688888877764
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.57 E-value=7.8e-15 Score=178.18 Aligned_cols=196 Identities=22% Similarity=0.326 Sum_probs=137.6
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCC----CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH---
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGI----KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--- 497 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~----~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~--- 497 (938)
++|+|++++++.+...+.... .|. ++..++||+||||||||++|+++|+.++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 568999999999988776532 122 234479999999999999999999999999999999987653
Q ss_pred ---------HhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc-
Q 002307 498 ---------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD- 567 (938)
Q Consensus 498 ---------~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~- 567 (938)
|+|.... ..+....+...++||||||||.+.+ ..++.|+..|+.-.
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~----------------------~~~~~Ll~~le~~~~ 586 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP----------------------DVFNILLQVMDNGTL 586 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH----------------------HHHHHHHHHHHHSEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH----------------------HHHHHHHHHhcCcEE
Confidence 3332221 2234444556679999999998632 23445555554210
Q ss_pred --C------CCeEEEEEecCCCC-------------------------cCCccccCCCccceEEeccCCChhhHHHHHHH
Q 002307 568 --T------GKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 614 (938)
Q Consensus 568 --~------~~~ViVIAATN~pd-------------------------~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~ 614 (938)
. -.+++||+|||... .+++++++ ||+..|.+++|+.+++..|++.
T Consensus 587 ~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~ 664 (758)
T 1r6b_X 587 TDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDK 664 (758)
T ss_dssp EETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHH
T ss_pred EcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHH
Confidence 0 14588999999753 67888887 9999999999999999999999
Q ss_pred Hhcccc---------cC-CccCHHHHHhhC--CCCCHHHHHHHHHHHHHHH
Q 002307 615 HASKVK---------MS-DSVDLSSYAKNL--PGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 615 ~l~~~~---------l~-~dvdL~~LA~~t--~GfSgaDL~~Lv~eA~l~A 653 (938)
++.... +. .+..+..++... ..+..+++.++++.+...+
T Consensus 665 ~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 665 FIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp HHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 886421 11 111244555432 2445788888888777644
No 70
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.8e-14 Score=151.92 Aligned_cols=202 Identities=22% Similarity=0.257 Sum_probs=139.7
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC-----CCEEEEeCch
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMAGSE 493 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg-----~pfi~vs~se 493 (938)
-.+.+|++++|++++++.|...+..- +. .++||+||||||||++|+++++.+. .+++.+++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG-----------SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT-----------CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC-----------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 45668999999999999988776531 12 2599999999999999999999863 3578888776
Q ss_pred hHHHHhhhhhHHHHHHHHHHH------hCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc
Q 002307 494 FVEVLVGVGSARIRDLFKRAK------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~ 567 (938)
.... ..++..+.... ...++||+|||+|.+... ..+.|+..++.
T Consensus 87 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~----------------------~~~~L~~~le~-- 136 (327)
T 1iqp_A 87 ERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD----------------------AQQALRRTMEM-- 136 (327)
T ss_dssp HHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH----------------------HHHHHHHHHHH--
T ss_pred cCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH----------------------HHHHHHHHHHh--
Confidence 4321 11222222211 145789999999987432 12334444432
Q ss_pred CCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHH
Q 002307 568 TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 568 ~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv 646 (938)
...++.+|++||.++.+++++.+ |+. .+.+++|+.++..++++..+...+.. ++..+..++..+.| +.+.+.+++
T Consensus 137 ~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l 212 (327)
T 1iqp_A 137 FSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINIL 212 (327)
T ss_dssp TTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred cCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHH
Confidence 23567778889999999999988 776 78999999999999999888765433 22236677777766 778887877
Q ss_pred HHHHHHHHHhCCcccchhhHHHHHH
Q 002307 647 QEAALVAVRKGHESILSSDMDDAVD 671 (938)
Q Consensus 647 ~eA~l~A~r~~~~~It~edl~~Ai~ 671 (938)
+.+.. ....|+.+++..++.
T Consensus 213 ~~~~~-----~~~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 213 QAAAA-----LDKKITDENVFMVAS 232 (327)
T ss_dssp HHHHT-----TCSEECHHHHHHHTT
T ss_pred HHHHh-----cCCCCCHHHHHHHHC
Confidence 75543 224677777766543
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.56 E-value=3.6e-14 Score=150.32 Aligned_cols=207 Identities=19% Similarity=0.206 Sum_probs=122.7
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC---CCEEEEeCchhHHHH
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEVL 498 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sel~~~~ 498 (938)
.+|++++|.+.+++.+.+.+..+.. .+.++||+||||||||++|++++..+. .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999999999888877765432 245899999999999999999999874 789999998764322
Q ss_pred -----hhhhhHH-------HHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc--
Q 002307 499 -----VGVGSAR-------IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-- 564 (938)
Q Consensus 499 -----vG~~~~~-------vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD-- 564 (938)
.|..... ....|..+ ..++|||||||.+... .+..+.+++....
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~-------------------~q~~Ll~~l~~~~~~ 130 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM-------------------VQEKLLRVIEYGELE 130 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH-------------------HHHHHHHHHHHCEEC
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH-------------------HHHHHHHHHHhCCee
Confidence 2211000 01123332 3579999999997532 2223334443311
Q ss_pred --C--CcCCCeEEEEEecCCC-------CcCCccccCCCccceEEeccCCChhhHH----HHHHHHhcc----cccCC--
Q 002307 565 --G--FDTGKGVIFLAATNRR-------DLLDPALLRPGRFDRKIRIRAPNAKGRT----EILKIHASK----VKMSD-- 623 (938)
Q Consensus 565 --g--~~~~~~ViVIAATN~p-------d~LDpALlRpGRFdr~I~V~lPd~eeR~----eILr~~l~~----~~l~~-- 623 (938)
+ .....++.+|+|||.+ ..++++|.+ ||.. +.+..|+..+|. .++++++.. .....
T Consensus 131 ~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~ 207 (265)
T 2bjv_A 131 RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFP 207 (265)
T ss_dssp CCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred cCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCccc
Confidence 0 0112457889999974 246778877 8863 455566666553 344444432 22211
Q ss_pred ccC---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhH
Q 002307 624 SVD---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDM 666 (938)
Q Consensus 624 dvd---L~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl 666 (938)
.++ +..+....-..+.++|.++++.+...+ ....|+.+|+
T Consensus 208 ~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 208 GFTERARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp CBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred CcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 233 344444432337789999999988765 3456777665
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.55 E-value=5.9e-15 Score=145.17 Aligned_cols=152 Identities=23% Similarity=0.345 Sum_probs=107.4
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----------CCCEEEEe
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 490 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----------g~pfi~vs 490 (938)
..+|++++|.++..+.+.+.+ .. ..+.+++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 346899999998877665543 22 235689999999999999999999987 78899998
Q ss_pred CchhHHH--HhhhhhHHHHHHHHHHHhC-CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc
Q 002307 491 GSEFVEV--LVGVGSARIRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (938)
Q Consensus 491 ~sel~~~--~vG~~~~~vr~lF~~Ar~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~ 567 (938)
+..+... +.+.....++.++..+... .|++|||||+|.+...+.... ........+..++ +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~----------~~~~~~~~l~~~~---~--- 149 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE----------GALDAGNILKPML---A--- 149 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT----------TSCCTHHHHHHHH---H---
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc----------cchHHHHHHHHHH---h---
Confidence 8776543 3344455677777776654 688999999999975432100 0011122233332 2
Q ss_pred CCCeEEEEEecCCCC-----cCCccccCCCccceEEeccCCC
Q 002307 568 TGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPN 604 (938)
Q Consensus 568 ~~~~ViVIAATN~pd-----~LDpALlRpGRFdr~I~V~lPd 604 (938)
...+++|++||.++ .+++++++ ||+. +.++.|+
T Consensus 150 -~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 150 -RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp -TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred -cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 25678888999865 68999999 9995 8998886
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.53 E-value=1.2e-14 Score=169.41 Aligned_cols=210 Identities=17% Similarity=0.186 Sum_probs=133.5
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCch-hHHHHhhh
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSE-FVEVLVGV 501 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~se-l~~~~vG~ 501 (938)
..|+|.+++++.+...+. .+.++||+||||||||++|+++|..++ .+|..+++.- ..+.+.|.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 448899998877654432 234899999999999999999999884 4666666542 12333331
Q ss_pred -hhHH--HHHHHHHHHhC---CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcC-------C--
Q 002307 502 -GSAR--IRDLFKRAKVN---KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-------F-- 566 (938)
Q Consensus 502 -~~~~--vr~lF~~Ar~~---~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg-------~-- 566 (938)
.... -...|..+... .++|||||||+.+.++ +.+.|+..|+. .
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~----------------------~q~~LL~~lee~~v~i~G~~~ 145 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPA----------------------ILNTLLTAINERQFRNGAHVE 145 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCCHH----------------------HHHHHHHHHHSSEEECSSSEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHH----------------------HHHHHHHHHHHHhccCCCCcC
Confidence 1111 12233322222 4679999999875322 23445555431 1
Q ss_pred cCCCeEEEEEecCCCC---cCCccccCCCccceEEeccCCCh-hhHHHHHHHHhcc------------------------
Q 002307 567 DTGKGVIFLAATNRRD---LLDPALLRPGRFDRKIRIRAPNA-KGRTEILKIHASK------------------------ 618 (938)
Q Consensus 567 ~~~~~ViVIAATN~pd---~LDpALlRpGRFdr~I~V~lPd~-eeR~eILr~~l~~------------------------ 618 (938)
..+.. ++|+|||.+. .+.+++++ ||...+.++.|+. +++..|++.+...
T Consensus 146 ~~~~~-~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~ 222 (500)
T 3nbx_X 146 KIPMR-LLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIG 222 (500)
T ss_dssp ECCCC-EEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHT
T ss_pred Ccchh-hhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCC
Confidence 11223 4577778532 23458888 9999999999987 7788898765431
Q ss_pred -cccCCccCHHHHHhh---------CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhcc
Q 002307 619 -VKMSDSVDLSSYAKN---------LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 619 -~~l~~dvdL~~LA~~---------t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
..+++++ ++.++.. ..|.|++.+..+++.|...|..+++..|+.+|+. ++..++.
T Consensus 223 ~v~v~d~v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 223 EITLPDHV-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp TCBCCHHH-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred cccCchHH-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 1111111 2222222 3588999999999999999999999999999998 5555544
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.52 E-value=1.9e-14 Score=157.28 Aligned_cols=205 Identities=21% Similarity=0.299 Sum_probs=129.5
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH---
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL--- 498 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~--- 498 (938)
++++|.+.+++.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999999888877653 234589999999999999999999965 6899999998765432
Q ss_pred --hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC---
Q 002307 499 --VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--- 566 (938)
Q Consensus 499 --vG~~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~--- 566 (938)
.|... ......|..|. .++|||||||.+... .+..+..++.+..-.
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------------~q~~Ll~~l~~~~~~~~g 129 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------------MQVRLLRAIQEREVQRVG 129 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------------HHHHHHHHHHSSBCCBTT
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------------HHHHHHHHHhcCEeeecC
Confidence 22100 01223455543 469999999997532 122233333332100
Q ss_pred ---cCCCeEEEEEecCCC-------CcCCccccCCCccceEEeccCCChhhH----HHHHHHHhccc----ccC-CccC-
Q 002307 567 ---DTGKGVIFLAATNRR-------DLLDPALLRPGRFDRKIRIRAPNAKGR----TEILKIHASKV----KMS-DSVD- 626 (938)
Q Consensus 567 ---~~~~~ViVIAATN~p-------d~LDpALlRpGRFdr~I~V~lPd~eeR----~eILr~~l~~~----~l~-~dvd- 626 (938)
....++.||+|||.+ ..+++.|.. ||. .+.+..|+..+| ..++++++... ... ..++
T Consensus 130 ~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~ 206 (304)
T 1ojl_A 130 SNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTP 206 (304)
T ss_dssp BCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCH
T ss_pred CcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCH
Confidence 112458899999975 134555555 664 555666665554 44666655432 111 1222
Q ss_pred --HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHH
Q 002307 627 --LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (938)
Q Consensus 627 --L~~LA~~t-~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~ 668 (938)
+..+.... +| +.++|.++++.|+..+ ....|+.+|+..
T Consensus 207 ~a~~~L~~~~wpG-nvReL~~~l~~~~~~~---~~~~i~~~~l~~ 247 (304)
T 1ojl_A 207 QAMDLLIHYDWPG-NIRELENAIERAVVLL---TGEYISERELPL 247 (304)
T ss_dssp HHHHHHHHCCCSS-HHHHHHHHHHHHHHHC---CSSSBCGGGSCG
T ss_pred HHHHHHHcCCCCC-CHHHHHHHHHHHHHhC---CCCcccHHhhhh
Confidence 45555554 45 7899999999988765 346788777653
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=6e-15 Score=175.28 Aligned_cols=220 Identities=18% Similarity=0.151 Sum_probs=138.0
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEe----CchhHHH---
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA----GSEFVEV--- 497 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs----~sel~~~--- 497 (938)
..|+|++++|+.+.-.+..- .+........+...++||+||||||||+||+++|+.++.+++... +..+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 45889999877663221100 000000012233448999999999999999999999877665421 2221111
Q ss_pred --HhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC---------
Q 002307 498 --LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------- 566 (938)
Q Consensus 498 --~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~--------- 566 (938)
..|... .....+..| ..+|+||||||.+... . .+.|+..|+.-
T Consensus 374 ~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~~~-------------------~---q~~Ll~~le~~~i~i~~~g~ 427 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMRDE-------------------D---RVAIHEAMEQQTVSIAKAGI 427 (595)
T ss_dssp GGGTSSCS-EEECHHHHH---SSSEECCTTTTCCCSH-------------------H---HHHHHHHHHSSSEEEESSSS
T ss_pred cccccccc-ccCCeeEec---CCCcEEeehhhhCCHh-------------------H---hhhhHHHHhCCEEEEecCCc
Confidence 011000 001223333 3469999999987432 1 23344444321
Q ss_pred --cCCCeEEEEEecCCCC-------------cCCccccCCCccce-EEeccCCChhhHHHHHHHHhccccc-------C-
Q 002307 567 --DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASKVKM-------S- 622 (938)
Q Consensus 567 --~~~~~ViVIAATN~pd-------------~LDpALlRpGRFdr-~I~V~lPd~eeR~eILr~~l~~~~l-------~- 622 (938)
..+.++.||||||.+. .+++++++ |||. .+..+.|+.+ ...|.++.+..... .
T Consensus 428 ~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~ 504 (595)
T 3f9v_A 428 VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDI 504 (595)
T ss_dssp EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCC
T ss_pred EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCH
Confidence 1135688999999876 89999999 9985 5556677777 88888877654221 0
Q ss_pred ------------------CccCHHHHHhh--------------CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 623 ------------------DSVDLSSYAKN--------------LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 623 ------------------~dvdL~~LA~~--------------t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
.+...+.+... ..+.|.+.+.++++.|...|..+++..|+.+|+.+|+
T Consensus 505 ~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 505 DTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp TTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 01112223222 3477999999999999999999999999999999998
Q ss_pred Hhhc
Q 002307 671 DRLT 674 (938)
Q Consensus 671 ~rv~ 674 (938)
.-..
T Consensus 585 ~l~~ 588 (595)
T 3f9v_A 585 NIMR 588 (595)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7553
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=8.6e-13 Score=144.76 Aligned_cols=191 Identities=17% Similarity=0.210 Sum_probs=127.3
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC--------------
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------------- 484 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~-------------- 484 (938)
-.+.+|++++|++++++.|.+.+. . ..+.++ ++|+||+|||||++++++|+++..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 355679999999999887766541 1 123345 999999999999999999996421
Q ss_pred ---------------CEEEEeCchhHHHHhhhhhHHHHHHHHHHH--------------hCCCeEEEEcCcchhhhhhcC
Q 002307 485 ---------------PFYQMAGSEFVEVLVGVGSARIRDLFKRAK--------------VNKPSVIFIDEIDALATRRQG 535 (938)
Q Consensus 485 ---------------pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar--------------~~~P~ILfIDEIDaL~~~r~~ 535 (938)
+++.+++++.. ......+++.+..+. ...|.||+|||+|.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~--- 149 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD--- 149 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH---
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH---
Confidence 23333332210 000112445554432 235779999999985321
Q ss_pred ccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHH
Q 002307 536 IFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIH 615 (938)
Q Consensus 536 ~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~ 615 (938)
..+.++..++.. ..+..+|.+||.++.+.+++++ |+ ..+.+++|+.++..++++..
T Consensus 150 -------------------~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 150 -------------------AQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp -------------------HHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHH
Confidence 123333333322 2356777788989999999998 87 78999999999999999998
Q ss_pred hcccccC-C-ccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 002307 616 ASKVKMS-D-SVDLSSYAKNLPGWTGARLAQLVQEAALV 652 (938)
Q Consensus 616 l~~~~l~-~-dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~ 652 (938)
+...++. + +..+..++..+.| +.+++.++++.+...
T Consensus 206 ~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 206 VTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 8765443 2 3346778888766 788888888776643
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.46 E-value=1.2e-13 Score=170.46 Aligned_cols=202 Identities=23% Similarity=0.300 Sum_probs=137.1
Q ss_pred cCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH---
Q 002307 424 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV--- 497 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~--- 497 (938)
+++|+|++++++.+...+...+..-. . ..++..++||+||||||||++|+++|..+ +.+|+.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~--~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK--D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS--C-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC--C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46799999999999988876432100 0 01233589999999999999999999988 789999999876542
Q ss_pred ---------HhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc-
Q 002307 498 ---------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD- 567 (938)
Q Consensus 498 ---------~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~- 567 (938)
|+|... ...+....+...++||||||||.+.. ..++.|+..++.-.
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~----------------------~~~~~Ll~~l~~~~~ 689 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHP----------------------DVFNILLQILDDGRL 689 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSCH----------------------HHHHHHHHHHTTTEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCH----------------------HHHHHHHHHhccCce
Confidence 122211 12333444455678999999998632 24556666665321
Q ss_pred --------CCCeEEEEEecCCC--------------------------CcCCccccCCCccceEEeccCCChhhHHHHHH
Q 002307 568 --------TGKGVIFLAATNRR--------------------------DLLDPALLRPGRFDRKIRIRAPNAKGRTEILK 613 (938)
Q Consensus 568 --------~~~~ViVIAATN~p--------------------------d~LDpALlRpGRFdr~I~V~lPd~eeR~eILr 613 (938)
.-.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.++...|++
T Consensus 690 ~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~ 767 (854)
T 1qvr_A 690 TDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVE 767 (854)
T ss_dssp CCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHH
T ss_pred ECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHH
Confidence 11367899999972 245667776 999999999999999999999
Q ss_pred HHhcccc-------cCCcc---CHHHHHhhCC--CCCHHHHHHHHHHHHHHHH
Q 002307 614 IHASKVK-------MSDSV---DLSSYAKNLP--GWTGARLAQLVQEAALVAV 654 (938)
Q Consensus 614 ~~l~~~~-------l~~dv---dL~~LA~~t~--GfSgaDL~~Lv~eA~l~A~ 654 (938)
+++.... ....+ .+..++.... .++.++|.++++++...+.
T Consensus 768 ~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 768 IQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 8876321 11112 2455666543 4578999999998877664
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=8e-13 Score=145.46 Aligned_cols=206 Identities=21% Similarity=0.247 Sum_probs=133.6
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC-----CEEEEeCch
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----PFYQMAGSE 493 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~-----pfi~vs~se 493 (938)
-.+.+|++++|++++++.|...+.. .+.|+ ++|+||||||||++|+++|+.+.. .+..+++++
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 3556899999999998888776642 12344 999999999999999999998633 366666654
Q ss_pred hHHHHhhhhhHHHHHHHHHHHh------CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc
Q 002307 494 FVEVLVGVGSARIRDLFKRAKV------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (938)
Q Consensus 494 l~~~~vG~~~~~vr~lF~~Ar~------~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~ 567 (938)
.. +...++..+..... ..+.|++|||+|.+... ..+.|+..++.
T Consensus 87 ~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~----------------------~~~~L~~~le~-- 136 (340)
T 1sxj_C 87 DR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA----------------------AQNALRRVIER-- 136 (340)
T ss_dssp CC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH----------------------HHHHHHHHHHH--
T ss_pred cc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH----------------------HHHHHHHHHhc--
Confidence 21 12234444433321 23679999999987432 12333444432
Q ss_pred CCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHH
Q 002307 568 TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLV 646 (938)
Q Consensus 568 ~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv 646 (938)
....+.+|.+||.+..+.+++++ |+. .+.+..++.++..+++...+....+. .+..+..++..+.| +.+.+.+++
T Consensus 137 ~~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l 212 (340)
T 1sxj_C 137 YTKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVL 212 (340)
T ss_dssp TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHT
T ss_pred CCCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 23455667788999999999998 865 78899999999999998888543322 12235566666655 566666665
Q ss_pred HHHHHHHHHhCCcccchhhHHHHH
Q 002307 647 QEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 647 ~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+.+...+...+...|+.+++..++
T Consensus 213 ~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 213 QSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHHhcCCcccccccHHHHHHHh
Confidence 544433211122357777766554
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.43 E-value=3.1e-12 Score=142.42 Aligned_cols=227 Identities=16% Similarity=0.160 Sum_probs=148.4
Q ss_pred ccCcccCcHHHHHHHHHHH-HHhcCchhhhccCCCCCceEEE--EcCCCchHHHHHHHHHHhc---------CCCEEEEe
Q 002307 423 KFSDVAGIDEAVEELQELV-RYLKNPELFDKMGIKPPHGVLL--EGPPGCGKTLVAKAIAGEA---------GVPFYQMA 490 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV-~~Lk~pe~~~~lG~~~p~GVLL--~GPPGTGKT~LArALA~el---------g~pfi~vs 490 (938)
..++++|.++..+.|.+.+ ...... . ...+..++| +||||+|||+|++++++++ +.++++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~-----~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG-----A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS-----S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC-----C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 4478999999999998887 643211 0 023557999 9999999999999999876 56778888
Q ss_pred Cch------hHHHHh---hh-------hhHH-HHHHHHHH-HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHH
Q 002307 491 GSE------FVEVLV---GV-------GSAR-IRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 552 (938)
Q Consensus 491 ~se------l~~~~v---G~-------~~~~-vr~lF~~A-r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~ 552 (938)
|.. +..... |. .... ...+.... ....|.||+|||+|.+...+.. .
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------------~--- 157 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-------------A--- 157 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------------C---
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------------c---
Confidence 743 222111 11 1111 22222222 2356889999999998642100 0
Q ss_pred HHHHHHHHHHhcCCc-CC--CeEEEEEecCCCC---cCC---ccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-
Q 002307 553 ETTLNQLLIELDGFD-TG--KGVIFLAATNRRD---LLD---PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS- 622 (938)
Q Consensus 553 ~~~LnqLL~eLDg~~-~~--~~ViVIAATN~pd---~LD---pALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~- 622 (938)
...+..++..++... .. .++.+|++||.++ .++ +.+.+ |+...+.+++++.++..++++.++......
T Consensus 158 ~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~ 235 (412)
T 1w5s_A 158 AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDT 235 (412)
T ss_dssp HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTT
T ss_pred hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC
Confidence 122333333333222 12 6788888887655 344 55656 566669999999999999998876532211
Q ss_pred --CccCHHHHHhhCC------CCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhc
Q 002307 623 --DSVDLSSYAKNLP------GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (938)
Q Consensus 623 --~dvdL~~LA~~t~------GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~ 674 (938)
.+..+..+++.+. | +++.+.++++.|...|..++...++.+++..++....
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 2223566777777 6 7889999999999888888888899999998887654
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.33 E-value=1e-11 Score=147.62 Aligned_cols=101 Identities=25% Similarity=0.367 Sum_probs=69.4
Q ss_pred CeEEEEEecCCC--CcCCccccCCCccc---eEEeccC--C-ChhhHHHHHHHHhcccc---cCCccC---HHHHHh---
Q 002307 570 KGVIFLAATNRR--DLLDPALLRPGRFD---RKIRIRA--P-NAKGRTEILKIHASKVK---MSDSVD---LSSYAK--- 632 (938)
Q Consensus 570 ~~ViVIAATN~p--d~LDpALlRpGRFd---r~I~V~l--P-d~eeR~eILr~~l~~~~---l~~dvd---L~~LA~--- 632 (938)
.++.||++||+. +.++++|++ ||+ ..+.++. + ..+....+++...+... ....++ +..+.+
T Consensus 251 ~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 251 CDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp CCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred eeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence 467899999986 689999999 986 4555543 2 23345555544443221 111222 344443
Q ss_pred hCCCC------CHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHh
Q 002307 633 NLPGW------TGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (938)
Q Consensus 633 ~t~Gf------SgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~r 672 (938)
+..|- +.+++.++++.|...|..+++..|+.+|+.+|+.+
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 23552 79999999999999998889999999999999964
No 81
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.29 E-value=1.9e-12 Score=167.38 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=109.3
Q ss_pred CCCCcccCcccCcHHHHHHHHHHHHH-hcC----------chhhhc------cCCC----------CCce--EEEEcCCC
Q 002307 418 GSTGVKFSDVAGIDEAVEELQELVRY-LKN----------PELFDK------MGIK----------PPHG--VLLEGPPG 468 (938)
Q Consensus 418 ~~~~v~F~dVvG~deak~eL~eiV~~-Lk~----------pe~~~~------lG~~----------~p~G--VLL~GPPG 468 (938)
..+.++|+||.|.+++|+++.+.+.+ ++. ++.|+. .|+. +|+| +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 44669999999999999999998887 533 556665 3333 4555 99999999
Q ss_pred chHHHHHHHHHHhc---CCCEEEEeCchhH------------HHHhhh----hhHHHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 469 CGKTLVAKAIAGEA---GVPFYQMAGSEFV------------EVLVGV----GSARIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 469 TGKT~LArALA~el---g~pfi~vs~sel~------------~~~vG~----~~~~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
||||+||++++.+. +-|.+.++..+.. +.|++. +++.++.+|..|+...||+||+|++|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999876 5666666655533 334455 7889999999999999999999999999
Q ss_pred hhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCC
Q 002307 530 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 581 (938)
Q Consensus 530 ~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~p 581 (938)
.+.+... ++..+ ....-..+.++++|.+|++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~-g~~~~----~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIE-GEIGD----SHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHH-SCTTC----CCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred Ccccccc-ccccc----ccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 9885310 00000 01123456799999999988777888888 77774
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.29 E-value=2.6e-12 Score=124.73 Aligned_cols=112 Identities=20% Similarity=0.276 Sum_probs=80.6
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHH
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSAR 505 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~ 505 (938)
+++|.+++++++.+.+..+. ..+.+|||+||||||||++|++++...+ ||+.++|+++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899999999988877542 2345799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCC
Q 002307 506 IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 581 (938)
Q Consensus 506 vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~p 581 (938)
....|..+. +++|||||||.+... .+..+.+++... ...++.+|+|||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~-------------------~q~~Ll~~l~~~----~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRN-------------------IQTGITFIIGKA----ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHH-------------------HHHHHHHHHHHH----TTTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHH-------------------HHHHHHHHHHhC----CCCCEEEEEecCCC
Confidence 455666543 569999999997543 122333444432 24567888899864
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.27 E-value=5.8e-12 Score=122.36 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=66.1
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhh
Q 002307 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG 502 (938)
Q Consensus 426 dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~~ 502 (938)
+++|.+...+.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 68899999988888777543 234579999999999999999999986 78999 999876442
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCcchhhh
Q 002307 503 SARIRDLFKRAKVNKPSVIFIDEIDALAT 531 (938)
Q Consensus 503 ~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~ 531 (938)
......|..+. .++|||||||.+..
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~ 90 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTR 90 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCH
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCH
Confidence 23455666653 46999999999754
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.26 E-value=7.6e-11 Score=129.97 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=113.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCC------------------------EEEEeCchhHHHHhhhhhHHHHHHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 511 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~p------------------------fi~vs~sel~~~~vG~~~~~vr~lF~ 511 (938)
+.++.+||+||||+|||++|+++|+.+.++ ++.++..+- -...+...++++++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHH
Confidence 457789999999999999999999987542 233332100 00123345777777
Q ss_pred HHHh----CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCcc
Q 002307 512 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (938)
Q Consensus 512 ~Ar~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpA 587 (938)
.+.. ....|++|||+|.+.. ...|.|+..++. ++.++++|.+||.++.+.++
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~----------------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTD----------------------AAANALLKTLEE--PPAETWFFLATREPERLLAT 154 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCH----------------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHH
T ss_pred HHhhccccCCcEEEEECchhhcCH----------------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHH
Confidence 7643 2457999999999742 234667777763 45567778888889999999
Q ss_pred ccCCCccceEEeccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 002307 588 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (938)
Q Consensus 588 LlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~ 650 (938)
+++ |+ ..+.+++|+.++..++++... .+ ++..+..+++.+.| +.+.+.++++.+.
T Consensus 155 i~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 155 LRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp HHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSHH
T ss_pred Hhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccch
Confidence 998 76 479999999999999998775 11 22335667777766 6777777766544
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.18 E-value=6.2e-11 Score=104.18 Aligned_cols=75 Identities=29% Similarity=0.526 Sum_probs=72.0
Q ss_pred cCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhcc
Q 002307 601 RAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 601 ~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
|+||.++|.+||+.++++.++..++|+..+|..|.||||+||.++|++|+..|.+++...|+.+||..|+.++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998889999999999999999999999999999999999999999999999999864
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.14 E-value=9.5e-11 Score=105.52 Aligned_cols=77 Identities=29% Similarity=0.497 Sum_probs=72.8
Q ss_pred ccCCChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccC
Q 002307 600 IRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 676 (938)
Q Consensus 600 V~lPd~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g 676 (938)
-.+||.++|.+||+.++++.++..++|+..||+.|.||||+||.++|++|++.|.++....|+.+||..|+.++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999999998999999999999999999999999999999999999999999999999998653
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.13 E-value=1.2e-10 Score=105.07 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=69.9
Q ss_pred ChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCCCccCc
Q 002307 604 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGI 682 (938)
Q Consensus 604 d~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~~~~~ 682 (938)
|.++|.+||+.|+++.++..++|+..+|..|+||||+||.++|++|++.|.+++...|+.+||..|+.++..|..+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999998876543
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=1.3e-09 Score=119.28 Aligned_cols=142 Identities=14% Similarity=0.236 Sum_probs=102.8
Q ss_pred CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc------CCCEEEEeCchhHHHHhhhh
Q 002307 429 GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------GVPFYQMAGSEFVEVLVGVG 502 (938)
Q Consensus 429 G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el------g~pfi~vs~sel~~~~vG~~ 502 (938)
|++++.+.|...+.. | + +..+||+||||+|||++|+++|+.+ ...++.++++. ...+
T Consensus 1 g~~~~~~~L~~~i~~----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 566777777766542 1 2 3479999999999999999999864 34677777542 0233
Q ss_pred hHHHHHHHHHHHhC----CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEec
Q 002307 503 SARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 578 (938)
Q Consensus 503 ~~~vr~lF~~Ar~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAAT 578 (938)
...+|.+++.+... ...|++|||+|.+... ..|.||..|+ +++.++++|.+|
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~~----------------------a~naLLk~LE--ep~~~t~fIl~t 119 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ----------------------AANAFLKALE--EPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH----------------------HHHHTHHHHH--SCCTTEEEEEEE
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH----------------------HHHHHHHHHh--CCCCCeEEEEEE
Confidence 45678888887543 2369999999997422 2466777776 344566777777
Q ss_pred CCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHh
Q 002307 579 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 616 (938)
Q Consensus 579 N~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l 616 (938)
|.++.+.+++++ | .+.+++|+.++..++++..+
T Consensus 120 ~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 120 RRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred CChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 888999999999 7 88999999999999998876
No 89
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.08 E-value=5e-10 Score=126.30 Aligned_cols=208 Identities=22% Similarity=0.299 Sum_probs=128.6
Q ss_pred cCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH--
Q 002307 424 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL-- 498 (938)
Q Consensus 424 F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~-- 498 (938)
++.++|.+...+++.+.+..+... ..+|||+|++|||||++|++++... +.||+.++|+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 456888888888888877765433 3468999999999999999998866 4799999998765432
Q ss_pred ---hhhhh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhc----
Q 002307 499 ---VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD---- 564 (938)
Q Consensus 499 ---vG~~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLD---- 564 (938)
.|... ......|+.|. .++||||||+.+... .+..+.++|++-.
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~~-------------------~q~~Ll~~l~~~~~~~~ 263 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSLE-------------------AQAKLLRVIESGKFYRL 263 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCHH-------------------HHHHHHHHHHHSEECCB
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCHH-------------------HHHHHHHHHhcCcEEeC
Confidence 22110 01224555554 359999999997533 3344455555421
Q ss_pred -CC-cCCCeEEEEEecCCCCcCCccccCCCccce-------EEeccCCChhhHHH----HHHHHhccc----ccC-CccC
Q 002307 565 -GF-DTGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KMS-DSVD 626 (938)
Q Consensus 565 -g~-~~~~~ViVIAATN~pd~LDpALlRpGRFdr-------~I~V~lPd~eeR~e----ILr~~l~~~----~l~-~dvd 626 (938)
+. ....++.||+|||..- . .+.+.|+|.. .+.+..|+..+|.+ ++++++... ... ..++
T Consensus 264 g~~~~~~~~~rii~at~~~l--~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~ 340 (387)
T 1ny5_A 264 GGRKEIEVNVRILAATNRNI--K-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFT 340 (387)
T ss_dssp TCCSBEECCCEEEEEESSCH--H-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEEC
T ss_pred CCCceeeccEEEEEeCCCCH--H-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 10 1123578999999631 1 1222234332 34566788777643 444444332 211 1233
Q ss_pred ---HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Q 002307 627 ---LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (938)
Q Consensus 627 ---L~~LA~~-t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai 670 (938)
+..+... ++| +.++|++++++|+..+ ....|+.+|+...+
T Consensus 341 ~~a~~~l~~~~wpG-NvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 341 KSAQELLLSYPWYG-NVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHHHHSCCTT-HHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HHHHHHHHhCCCCc-HHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 3334433 345 6789999999998776 44678888886543
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.06 E-value=6.9e-10 Score=149.26 Aligned_cols=139 Identities=22% Similarity=0.292 Sum_probs=96.6
Q ss_pred CCceEEEEcCCCchHHHHHHH-HHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHH---------------hCCCeE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKA-IAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAK---------------VNKPSV 520 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArA-LA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar---------------~~~P~I 520 (938)
.++++||+||||||||++|+. ++...+.+++.++++...+ ...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 346999999999999999955 4555577888888765432 223444444321 123579
Q ss_pred EEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-C-------CeEEEEEecCCCC-----cCCcc
Q 002307 521 IFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-G-------KGVIFLAATNRRD-----LLDPA 587 (938)
Q Consensus 521 LfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-~-------~~ViVIAATN~pd-----~LDpA 587 (938)
|||||||.-...+- +.+.....+.+++. ..++.. . .++.+|||||++. .++++
T Consensus 1340 lFiDEinmp~~d~y-------------g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY-------------GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp EEEETTTCSCCCSS-------------SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred EEeccccccccccc-------------CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh
Confidence 99999987433221 11223456666663 223211 1 3589999999984 89999
Q ss_pred ccCCCccceEEeccCCChhhHHHHHHHHhcc
Q 002307 588 LLRPGRFDRKIRIRAPNAKGRTEILKIHASK 618 (938)
Q Consensus 588 LlRpGRFdr~I~V~lPd~eeR~eILr~~l~~ 618 (938)
++| || ..+.++.|+.+++..|+..++..
T Consensus 1406 llR--rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1406 FTR--HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp HHT--TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred hhh--ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 999 88 78999999999999999988764
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.04 E-value=3.8e-10 Score=112.54 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=64.4
Q ss_pred CCcccCcccCcH-HHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCchh
Q 002307 420 TGVKFSDVAGID-EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEF 494 (938)
Q Consensus 420 ~~v~F~dVvG~d-eak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sel 494 (938)
.+.+|+++++.+ ..++.+..+..++.+ +....+.+++|+||||||||+|++++++.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 345788888633 333333333333332 223446789999999999999999999876 677888888887
Q ss_pred HHHHhhhhhHH-HHHHHHHHHhCCCeEEEEcCcchh
Q 002307 495 VEVLVGVGSAR-IRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 495 ~~~~vG~~~~~-vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
...+....... ....+.. ...|.+|+|||++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 66543221110 1122222 236789999999864
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.89 E-value=2.2e-09 Score=95.25 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCC
Q 002307 604 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGP 677 (938)
Q Consensus 604 d~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~ 677 (938)
|.++|.+||+.++++.++..++|+..+|..|.||||+||.++|++|+..|.+++...|+.+||..|+.++.++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 67899999999999999888999999999999999999999999999999999989999999999999987643
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.84 E-value=9.2e-08 Score=103.50 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=114.7
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh------
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF------ 494 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel------ 494 (938)
....+.++|.++..+.|.+ + .. ..++|+||+|+|||+|++.++++.+.+++++++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l---~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-L---RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-T---CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCCHHHhcChHHHHHHHHH-h---cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 3455778999988777755 3 21 379999999999999999999998777888876542
Q ss_pred -----HHHHhhh-----------------------------------hhHHHHHHHHHHHhC--CCeEEEEcCcchhhhh
Q 002307 495 -----VEVLVGV-----------------------------------GSARIRDLFKRAKVN--KPSVIFIDEIDALATR 532 (938)
Q Consensus 495 -----~~~~vG~-----------------------------------~~~~vr~lF~~Ar~~--~P~ILfIDEIDaL~~~ 532 (938)
...+... ....+..++...... .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 1111000 011234455444332 3899999999997542
Q ss_pred hcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcC---------CccccCCCccceEEeccCC
Q 002307 533 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLL---------DPALLRPGRFDRKIRIRAP 603 (938)
Q Consensus 533 r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~L---------DpALlRpGRFdr~I~V~lP 603 (938)
.. ......+..+.... .++.+|.+++....+ ...+ .||+...+.+++.
T Consensus 153 ~~---------------~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l 209 (357)
T 2fna_A 153 RG---------------VNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPF 209 (357)
T ss_dssp TT---------------CCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCC
T ss_pred Cc---------------hhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCC
Confidence 00 00122333333221 245555555432211 1122 2466678999999
Q ss_pred ChhhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHH
Q 002307 604 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 604 d~eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~e 648 (938)
+.++..++++..+...+...+ +...+...+.| ++.-+..++..
T Consensus 210 ~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 210 SREEAIEFLRRGFQEADIDFK-DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp CHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCC-CHHHHHHHHHH
Confidence 999999999887754333322 24778888878 57777766554
No 94
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.82 E-value=2.2e-09 Score=95.39 Aligned_cols=73 Identities=33% Similarity=0.363 Sum_probs=54.8
Q ss_pred hhHHHHHHHHhcccccCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhccCCC
Q 002307 606 KGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPK 678 (938)
Q Consensus 606 eeR~eILr~~l~~~~l~~dvdL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~g~~ 678 (938)
++|.+||+.|+++.++..++|+..+|..|+||||+||.++|++|+..|.+++...|+.+||..|+.++..+..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4789999999999988889999999999999999999999999999999999999999999999999976543
No 95
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.81 E-value=3.9e-09 Score=106.81 Aligned_cols=103 Identities=26% Similarity=0.276 Sum_probs=64.5
Q ss_pred CcccCcccCcHHHHH-HHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 002307 421 GVKFSDVAGIDEAVE-ELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (938)
Q Consensus 421 ~v~F~dVvG~deak~-eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~ 496 (938)
..+|+++++.+...+ .+..+..++.+... ...+.+++|+||||||||+||+++++++ +.+++.++++++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 457999887653322 33333333332110 0124789999999999999999999977 77899999988776
Q ss_pred HHhhhh-hHHHHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 497 VLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 497 ~~vG~~-~~~vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
.+.... ...+...+.... .+++|+|||++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred HHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 543321 111223333333 24599999997653
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.79 E-value=2.8e-08 Score=114.36 Aligned_cols=216 Identities=18% Similarity=0.141 Sum_probs=122.1
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHH-HHhcCCCEEEEeCch-hHHHHhhh---
Q 002307 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAI-AGEAGVPFYQMAGSE-FVEVLVGV--- 501 (938)
Q Consensus 427 VvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArAL-A~elg~pfi~vs~se-l~~~~vG~--- 501 (938)
|.|++.+|..|.-.+ +..... ++..-+|||.|+||| ||++|+++ +.-+....+ .++.. -...+.+.
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEc
Confidence 889999877664332 111000 122337999999999 99999999 665544332 22210 00011110
Q ss_pred --hhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHH----hcCCcCCCeEEEE
Q 002307 502 --GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE----LDGFDTGKGVIFL 575 (938)
Q Consensus 502 --~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~e----LDg~~~~~~ViVI 575 (938)
+...-...+..|.. .|+|||||+.+..+ .+..+.+.+++ +.|..-+.++.||
T Consensus 286 ~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~~-------------------~qsaLlEaMEe~~VtI~G~~lparf~VI 343 (506)
T 3f8t_A 286 DRGWALRAGAAVLADG---GILAVDHLEGAPEP-------------------HRWALMEAMDKGTVTVDGIALNARCAVL 343 (506)
T ss_dssp SSSEEEEECHHHHTTT---SEEEEECCTTCCHH-------------------HHHHHHHHHHHSEEEETTEEEECCCEEE
T ss_pred CCCcccCCCeeEEcCC---CeeehHhhhhCCHH-------------------HHHHHHHHHhCCcEEECCEEcCCCeEEE
Confidence 00000123334433 49999999986533 22233333332 1122224568999
Q ss_pred EecCCCC-----------cCCccccCCCccceEEe-ccCCChhhH---------HHHHHH---Hhc----ccccCCccC-
Q 002307 576 AATNRRD-----------LLDPALLRPGRFDRKIR-IRAPNAKGR---------TEILKI---HAS----KVKMSDSVD- 626 (938)
Q Consensus 576 AATN~pd-----------~LDpALlRpGRFdr~I~-V~lPd~eeR---------~eILr~---~l~----~~~l~~dvd- 626 (938)
||+|... .|++++++ |||..+. ++.|+.+.. .+.++. +++ ...+.++..
T Consensus 344 AA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~ 421 (506)
T 3f8t_A 344 AAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARK 421 (506)
T ss_dssp EEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHH
T ss_pred EEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHH
Confidence 9999864 78889999 9987554 455654331 112222 222 111221110
Q ss_pred -HHHH------H--h------hCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhhcc
Q 002307 627 -LSSY------A--K------NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (938)
Q Consensus 627 -L~~L------A--~------~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv~~ 675 (938)
+..+ . . ...|.|++.++.+++-|...|.-++++.++.+|+.+|+.-+..
T Consensus 422 yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 422 RLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 1111 1 0 2458899999999999999999999999999999999876643
No 97
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.78 E-value=2.6e-08 Score=111.68 Aligned_cols=193 Identities=21% Similarity=0.318 Sum_probs=115.7
Q ss_pred CcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCchhHH-----H
Q 002307 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFVE-----V 497 (938)
Q Consensus 425 ~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sel~~-----~ 497 (938)
.+++|.+....++.+.+..+... ...+|++|++||||+++|+++....+. +|+.++|..+.. .
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45789988888888877765432 236999999999999999999987644 399999986432 2
Q ss_pred Hhhhhh-------HHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCC--cC
Q 002307 498 LVGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DT 568 (938)
Q Consensus 498 ~vG~~~-------~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~--~~ 568 (938)
+.|... ......|+.|.. .+||||||+.+... .+..+.++|++-.-. ..
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~-------------------~Q~~Ll~~l~~~~~~~~g~ 256 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQR-------------------VQAKLLRVLETGSFTRLGG 256 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCHH-------------------HHHHHHHHHHHSEECCBTC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCHH-------------------HHHHHHHHHHhCCcccCCC
Confidence 222211 011234555543 48999999997543 334444555442111 11
Q ss_pred ----CCeEEEEEecCCCCcCCccccCCCccce-------EEeccCCChhhH----HHHHHHHhcccc----cC-CccC--
Q 002307 569 ----GKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGR----TEILKIHASKVK----MS-DSVD-- 626 (938)
Q Consensus 569 ----~~~ViVIAATN~pd~LDpALlRpGRFdr-------~I~V~lPd~eeR----~eILr~~l~~~~----l~-~dvd-- 626 (938)
..++.+|+|||.. +. .+...|+|.. .+.+..|+..+| ..++++++.+.. .. ..++
T Consensus 257 ~~~~~~~~rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 333 (368)
T 3dzd_A 257 NQKIEVDIRVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE 333 (368)
T ss_dssp CCBEECCCEEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH
T ss_pred CcceeeeeEEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1257789999952 22 1222244432 445556766665 345555554321 11 1233
Q ss_pred -HHHHHhhC-CCCCHHHHHHHHHHHHHHH
Q 002307 627 -LSSYAKNL-PGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 627 -L~~LA~~t-~GfSgaDL~~Lv~eA~l~A 653 (938)
+..+.... +| +.++|++++++|+..+
T Consensus 334 a~~~L~~~~wpG-NvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 334 TKEYLMKQEWKG-NVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHTCCCTT-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCc-HHHHHHHHHHHHHHhC
Confidence 34444443 55 7799999999988665
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.77 E-value=5.7e-07 Score=97.14 Aligned_cols=191 Identities=16% Similarity=0.158 Sum_probs=113.1
Q ss_pred CcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH-----
Q 002307 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV----- 495 (938)
Q Consensus 421 ~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~----- 495 (938)
...-+.++|.++..+.|.+.+.. | +.++|+||+|+|||+|++.++++.+ .+++++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 34456789999998888776542 1 4799999999999999999999886 6667665431
Q ss_pred -------HHHh--------------------hhh----hHHHHHHHHH----HHhCCCeEEEEcCcchhhhhhcCccCCc
Q 002307 496 -------EVLV--------------------GVG----SARIRDLFKR----AKVNKPSVIFIDEIDALATRRQGIFKDT 540 (938)
Q Consensus 496 -------~~~v--------------------G~~----~~~vr~lF~~----Ar~~~P~ILfIDEIDaL~~~r~~~~~~~ 540 (938)
..+. +.. ...+..++.. +....|.+|+|||++.+......
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~----- 146 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR----- 146 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT-----
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc-----
Confidence 1110 000 0122233322 22224899999999997531000
Q ss_pred chhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCC---------cCCccccCCCccceEEeccCCChhhHHHH
Q 002307 541 TDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD---------LLDPALLRPGRFDRKIRIRAPNAKGRTEI 611 (938)
Q Consensus 541 ~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd---------~LDpALlRpGRFdr~I~V~lPd~eeR~eI 611 (938)
........+..++... .++.+|.++.... .....+. ||+...+.+++.+.++-.++
T Consensus 147 -------~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~ 211 (350)
T 2qen_A 147 -------GGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEF 211 (350)
T ss_dssp -------TTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHH
T ss_pred -------chhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHH
Confidence 1112223333333321 2444444443321 1112222 46677899999999999999
Q ss_pred HHHHhcccccC-CccCHHHHHhhCCCCCHHHHHHHHHH
Q 002307 612 LKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQE 648 (938)
Q Consensus 612 Lr~~l~~~~l~-~dvdL~~LA~~t~GfSgaDL~~Lv~e 648 (938)
++..+...+.. ....+..+...+.| .+.-+..++..
T Consensus 212 l~~~~~~~~~~~~~~~~~~i~~~tgG-~P~~l~~~~~~ 248 (350)
T 2qen_A 212 LKRGFREVNLDVPENEIEEAVELLDG-IPGWLVVFGVE 248 (350)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 98876543322 22245677777877 56666666543
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.63 E-value=2.3e-08 Score=98.09 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=46.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
.+..++|+||+|+|||+|++++++.+ |..++++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 45689999999999999999999987 777888888765432 112357899999998754
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.58 E-value=1.1e-08 Score=112.99 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=69.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCC--CEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALAT 531 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg~--pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~ 531 (938)
|+.++..++|+||||||||+||.++|.+.+. .|+.....+.++.+.......+..+++...... +|+||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 3444556899999999999999999987554 455552122222122223334444555555444 999999999864
Q ss_pred hhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccc
Q 002307 532 RRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPAL 588 (938)
Q Consensus 532 ~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpAL 588 (938)
...... ......+.+.+++..|.++....++.+|+++| +...|+++
T Consensus 197 ~~~~~s----------~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNT----------TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccc----------ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 432100 00011234556666665554445678888888 55566554
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.57 E-value=1.2e-07 Score=103.79 Aligned_cols=102 Identities=20% Similarity=0.305 Sum_probs=61.8
Q ss_pred CcccCcccCcH-HHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCchhH
Q 002307 421 GVKFSDVAGID-EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFV 495 (938)
Q Consensus 421 ~v~F~dVvG~d-eak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sel~ 495 (938)
..+|+++.+.+ .....+..+..++.+. ....+.+++|+||||||||+||+++|.++ +.+++.++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 35889988644 2222222222333221 11135789999999999999999999855 4889999998887
Q ss_pred HHHhhhh-hHHHHHHHHHHHhCCCeEEEEcCcchhh
Q 002307 496 EVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 530 (938)
Q Consensus 496 ~~~vG~~-~~~vr~lF~~Ar~~~P~ILfIDEIDaL~ 530 (938)
..+.... .......+.... .+.+|+||||+...
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 7654421 111222222222 34599999997643
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.44 E-value=1e-07 Score=98.24 Aligned_cols=130 Identities=19% Similarity=0.189 Sum_probs=81.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh--------cC-CCEEEEeCchhHHHHh----------hhhhH--HHHHHHHHH--Hh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE--------AG-VPFYQMAGSEFVEVLV----------GVGSA--RIRDLFKRA--KV 515 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e--------lg-~pfi~vs~sel~~~~v----------G~~~~--~vr~lF~~A--r~ 515 (938)
-..|++|+||||||++|.+.+.. .| .+++..++.++..... ..... ....++.-+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 36899999999999999886443 35 7777777665532111 11000 012222221 22
Q ss_pred CCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccc
Q 002307 516 NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFD 595 (938)
Q Consensus 516 ~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFd 595 (938)
...+||+|||++.+.+.+...... ..++..+.. ....++-||.+|+.++.|+.++++ |++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~-----------------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~ 145 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI-----------------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVR 145 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC-----------------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEE
T ss_pred cCceEEEEEChhhhccCccccchh-----------------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--Hhh
Confidence 347799999999986544221100 124455543 334556667788889999999887 999
Q ss_pred eEEeccCCChhhH
Q 002307 596 RKIRIRAPNAKGR 608 (938)
Q Consensus 596 r~I~V~lPd~eeR 608 (938)
.++++..|....+
T Consensus 146 ~~~~l~~~~~~~~ 158 (199)
T 2r2a_A 146 KHYHIASNKMGMR 158 (199)
T ss_dssp EEEEEEECSSCCE
T ss_pred eEEEEcCcccCcc
Confidence 9999988765544
No 103
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.41 E-value=1.8e-07 Score=105.44 Aligned_cols=120 Identities=17% Similarity=0.116 Sum_probs=78.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhh-
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALAT- 531 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~- 531 (938)
++++++..++|+||||+|||+|++++++..+..++.+..++-... |......+.+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~------------~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN------------FELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHH------------HHHGGGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHH------------HHHHHhcchhHHHHHHHHHHHHH
Confidence 467788899999999999999999999998877665443321100 1111122446789999998765
Q ss_pred hhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccC
Q 002307 532 RRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 602 (938)
Q Consensus 532 ~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~l 602 (938)
.+.... + . .. .....+...+|| .+.|+++||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~~-~---------~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPS-G---------Q-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCC-C---------S-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhccc-c---------C-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 221100 0 0 00 022334444554 35677889999999 79999999998776644
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.37 E-value=2.2e-06 Score=115.98 Aligned_cols=170 Identities=16% Similarity=0.173 Sum_probs=108.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCcc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 537 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~ 537 (938)
..|+++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+... ++++++|||+.+....
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~ev---- 713 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDEKV---- 713 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHH----
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcChHH----
Confidence 358999999999999999999999999999999986543 23455666665543 4699999999865431
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHhc---------C--CcCCCeEEEEEecCC----CCcCCccccCCCccceEEeccC
Q 002307 538 KDTTDHLYNAATQERETTLNQLLIELD---------G--FDTGKGVIFLAATNR----RDLLDPALLRPGRFDRKIRIRA 602 (938)
Q Consensus 538 ~~~~~~~~~~~~~e~~~~LnqLL~eLD---------g--~~~~~~ViVIAATN~----pd~LDpALlRpGRFdr~I~V~l 602 (938)
.....+.+..+...+. | +.-+.++.|++|.|. ...|++++.+ || +.+.+..
T Consensus 714 -----------Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~ 779 (2695)
T 4akg_A 714 -----------LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKS 779 (2695)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCC
T ss_pred -----------HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeC
Confidence 1111122222222221 1 112345677888883 4578999988 77 6899999
Q ss_pred CChhhHHHHHHHHhcccccCCc-----cCHHHHHh-hC-----CCCCHHHHHHHHHHHHHHH
Q 002307 603 PNAKGRTEILKIHASKVKMSDS-----VDLSSYAK-NL-----PGWTGARLAQLVQEAALVA 653 (938)
Q Consensus 603 Pd~eeR~eILr~~l~~~~l~~d-----vdL~~LA~-~t-----~GfSgaDL~~Lv~eA~l~A 653 (938)
||.+...+|+-.... ...... +.+-.+++ .. ..|.-+.+..+++.|....
T Consensus 780 Pd~~~i~ei~l~s~G-f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 780 PQSGTIAEMILQIMG-FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp CCHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 999988887533221 110000 01111111 12 2367889998888776544
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.26 E-value=1.8e-06 Score=113.70 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=80.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchh----HHHHhh------------hhhHHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF----VEVLVG------------VGSARIRDLFKRAK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel----~~~~vG------------~~~~~vr~lF~~Ar 514 (938)
|+.++++++|+||||||||+||.+++.++ |....+++..+. .....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37788999999999999999999998876 455666665432 222223 23355666777788
Q ss_pred hCCCeEEEEcCcchhhhhhc--CccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCC
Q 002307 515 VNKPSVIFIDEIDALATRRQ--GIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR 580 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~~r~--~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~ 580 (938)
..+|++|||||++.+.+... +..++ . ......+.+.++|.+|.++....+++|| +||.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~---~----~~~~~~R~lsqlL~~L~~~~~~~~v~VI-~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGD---S----HMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTC---C----CTTHHHHHHHHHHHHHHHHHHTTTCEEE-EEEC
T ss_pred cCCCCEEEEcChhHhcccccccccccc---c----ccchHHHHHHHHHHHHHHHHHhCCcEEE-EEcc
Confidence 89999999999998876532 11011 0 1111245677888888877777777777 4554
No 106
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.05 E-value=1.1e-05 Score=92.67 Aligned_cols=129 Identities=22% Similarity=0.259 Sum_probs=98.0
Q ss_pred CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe---------cC---CCCcCC
Q 002307 518 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA---------TN---RRDLLD 585 (938)
Q Consensus 518 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA---------TN---~pd~LD 585 (938)
|.|+||||+|.+.. ...+.|+..|+.. ...++|+++ |+ .++.++
T Consensus 296 ~~VliIDEa~~l~~----------------------~a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~ 351 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI----------------------ECFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIP 351 (456)
T ss_dssp ECEEEEESGGGCBH----------------------HHHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCC
T ss_pred ceEEEEechhhcCH----------------------HHHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCC
Confidence 46999999999742 3467777777743 334555555 33 267889
Q ss_pred ccccCCCccceEEeccCCChhhHHHHHHHHhcccccC-CccCHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCcccch
Q 002307 586 PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILS 663 (938)
Q Consensus 586 pALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~-~dvdL~~LA~~t-~GfSgaDL~~Lv~eA~l~A~r~~~~~It~ 663 (938)
+.+++ ||.. +.+++|+.++..++|+..+...... .+..+..+++.+ .| +++...++++.|...|..+++..|+.
T Consensus 352 ~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~ 427 (456)
T 2c9o_A 352 LDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEK 427 (456)
T ss_dssp HHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCH
T ss_pred hhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCH
Confidence 99999 9876 6999999999999999887644332 222255666666 55 89999999999999999999999999
Q ss_pred hhHHHHHHhhc
Q 002307 664 SDMDDAVDRLT 674 (938)
Q Consensus 664 edl~~Ai~rv~ 674 (938)
+|+.+|+..+.
T Consensus 428 ~~v~~~~~~~~ 438 (456)
T 2c9o_A 428 EHVEEISELFY 438 (456)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.99 E-value=1.2e-05 Score=109.65 Aligned_cols=139 Identities=22% Similarity=0.256 Sum_probs=90.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc-CCCEEEEeCchhHHHHhhhhhHHHHHHHHHH----H------------hCCCeE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAGSEFVEVLVGVGSARIRDLFKRA----K------------VNKPSV 520 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el-g~pfi~vs~sel~~~~vG~~~~~vr~lF~~A----r------------~~~P~I 520 (938)
.++|||+||||||||++++...... +.+++.++++.-.+ ...+...++.. + ....+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4579999999999998876554443 66778888765322 22333333321 0 022369
Q ss_pred EEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcC-------CCeEEEEEecCCC-----CcCCccc
Q 002307 521 IFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-------GKGVIFLAATNRR-----DLLDPAL 588 (938)
Q Consensus 521 LfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~-------~~~ViVIAATN~p-----d~LDpAL 588 (938)
+||||++.-.... .+.+.....+.+++..-.-+.. -.++.+|||+|.| ..+++++
T Consensus 1378 lFiDDiNmp~~D~-------------yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1378 VFCDEINLPSTDK-------------YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp EEETTTTCCCCCT-------------TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEecccCCCCccc-------------cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 9999998632211 1222344566666654211111 1457899999987 4689999
Q ss_pred cCCCccceEEeccCCChhhHHHHHHHHhcc
Q 002307 589 LRPGRFDRKIRIRAPNAKGRTEILKIHASK 618 (938)
Q Consensus 589 lRpGRFdr~I~V~lPd~eeR~eILr~~l~~ 618 (938)
+| ||. .+.++.|+.+....|+..++..
T Consensus 1445 ~r--~F~-vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1445 LR--HAP-ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp HT--TCC-EEECCCCCHHHHHHHHHHHHHH
T ss_pred Hh--hce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 99 886 5899999999999998766543
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.97 E-value=3.7e-06 Score=87.42 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
+..+++||+||||||||++|.++|+.+...++.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 334689999999999999999999998655443
No 109
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.92 E-value=9.5e-05 Score=81.01 Aligned_cols=176 Identities=13% Similarity=0.091 Sum_probs=113.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CC-CE--EEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcCc
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GV-PF--YQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEI 526 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~-pf--i~vs~sel~~~~vG~~~~~vr~lF~~Ar~----~~P~ILfIDEI 526 (938)
.+...||+||+|+||+..+++++..+ +. ++ +.+++ ...++.+++.+.. ....|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 45679999999999999999998865 32 32 22221 1234555544432 34569999999
Q ss_pred ch-hhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCC-----CCcCCccccCCCccceEEec
Q 002307 527 DA-LATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-----RDLLDPALLRPGRFDRKIRI 600 (938)
Q Consensus 527 Da-L~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~-----pd~LDpALlRpGRFdr~I~V 600 (938)
|. +... ..+.|+..++.. +...++|+++++. ...+.+++.+ |. ..+.+
T Consensus 86 ~~kl~~~----------------------~~~aLl~~le~p-~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~ 139 (343)
T 1jr3_D 86 ENGPNAA----------------------INEQLLTLTGLL-HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTC 139 (343)
T ss_dssp SSCCCTT----------------------HHHHHHHHHTTC-BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEE
T ss_pred CCCCChH----------------------HHHHHHHHHhcC-CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEe
Confidence 87 5321 234455555532 2344555555442 2345667776 43 58889
Q ss_pred cCCChhhHHHHHHHHhcccccCCcc-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHhh
Q 002307 601 RAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (938)
Q Consensus 601 ~lPd~eeR~eILr~~l~~~~l~~dv-dL~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~edl~~Ai~rv 673 (938)
.+++..+....++..++..++.-+. .+..++..+.| +.+++.+.++.....+ +...|+.+++...+...
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 9999999999999888776544222 35566766655 7777777777766553 34579999998887654
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.88 E-value=3.8e-05 Score=77.38 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=24.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFY 487 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi 487 (938)
.+.|.||+|+|||+|++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998865543
No 111
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.82 E-value=7.7e-06 Score=97.21 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=25.5
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++++.-+.|.||+|+|||+|++.+++..
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 346677779999999999999999999843
No 112
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.78 E-value=3.5e-05 Score=78.02 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
|+.++.-++|+||||+|||+|++.+|...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666677999999999999999999986677888887654
No 113
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.75 E-value=7.9e-05 Score=88.18 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeeccccc
Q 002307 275 LMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIAR 321 (938)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~ 321 (938)
++.-++.+++++.+++++..|.++.+.+++....+...+.++..+..
T Consensus 257 ~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~ 303 (582)
T 3b5x_A 257 MIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTS 303 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677778888889999988888777776666555554443
No 114
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.74 E-value=2.7e-05 Score=100.46 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=25.8
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++++.-+.|+||+|+|||+|++.+.+..
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 345677779999999999999999999855
No 115
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.72 E-value=1.8e-05 Score=93.68 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhheeeeecc
Q 002307 274 RLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWP 318 (938)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p 318 (938)
.++.-++.+++++.+++++..|.++.+.+++....+...+.++..
T Consensus 252 ~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~ 296 (578)
T 4a82_A 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRR 296 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344456667778888888999999888877766666555544433
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.71 E-value=0.00021 Score=72.48 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
|+.++..++|+||||+|||+|++.++... +.++++++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 45666779999999999999999998654 5566666543
No 117
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.66 E-value=0.00023 Score=73.29 Aligned_cols=38 Identities=34% Similarity=0.393 Sum_probs=28.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHH--Hh--cCCCEEEEeC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIA--GE--AGVPFYQMAG 491 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA--~e--lg~pfi~vs~ 491 (938)
|+.++.-+.|.||+|+|||+|+++++ .. .+...+.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 45666779999999999999999998 32 3455555544
No 118
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.65 E-value=0.0013 Score=76.88 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=95.9
Q ss_pred ccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc-------CCCEEEEeCch--
Q 002307 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSE-- 493 (938)
Q Consensus 423 ~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el-------g~pfi~vs~se-- 493 (938)
....++|.+...++|.+.+... ...++-|+|+||+|+|||+||+.+++.. ...++.++.+.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 4467899999988887765321 1224568999999999999999997532 11233333222
Q ss_pred ---hHHHH------hhh----------hhHHHHHHHHHH--HhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHH
Q 002307 494 ---FVEVL------VGV----------GSARIRDLFKRA--KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 552 (938)
Q Consensus 494 ---l~~~~------vG~----------~~~~vr~lF~~A--r~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~ 552 (938)
+...+ .+. ....+...+... ....|.+|+||+++...
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~---------------------- 249 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW---------------------- 249 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH----------------------
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH----------------------
Confidence 11111 110 011122222222 22368999999997521
Q ss_pred HHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEec---cCCChhhHHHHHHHHhcccccCCccCHHH
Q 002307 553 ETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRI---RAPNAKGRTEILKIHASKVKMSDSVDLSS 629 (938)
Q Consensus 553 ~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V---~lPd~eeR~eILr~~l~~~~l~~dvdL~~ 629 (938)
.+..+ ..+..||.||........ . . + ..+.+ +..+.++-.++|..++.............
T Consensus 250 ------~l~~l-----~~~~~ilvTsR~~~~~~~-~-~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~ 312 (591)
T 1z6t_A 250 ------VLKAF-----DSQCQILLTTRDKSVTDS-V-M-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHS 312 (591)
T ss_dssp ------HHHTT-----CSSCEEEEEESCGGGGTT-C-C-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHH
T ss_pred ------HHHHh-----cCCCeEEEECCCcHHHHh-c-C-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHH
Confidence 11122 234456667765432211 1 1 1 22333 46788888899988875422112234678
Q ss_pred HHhhCCCCCHHHHHHHH
Q 002307 630 YAKNLPGWTGARLAQLV 646 (938)
Q Consensus 630 LA~~t~GfSgaDL~~Lv 646 (938)
+++.+.|+ +--|+.+.
T Consensus 313 i~~~~~G~-PLal~~~a 328 (591)
T 1z6t_A 313 IIKECKGS-PLVVSLIG 328 (591)
T ss_dssp HHHHHTTC-HHHHHHHH
T ss_pred HHHHhCCC-cHHHHHHH
Confidence 88889884 66665543
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.63 E-value=0.00011 Score=75.38 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=50.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCchh------HHH--Hhhhh--------------
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEF------VEV--LVGVG-------------- 502 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sel------~~~--~vG~~-------------- 502 (938)
|+.++.-++|+||||+|||+|++.++... +...++++..+. ... ..+..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 45666779999999999999999999852 456777776541 111 01110
Q ss_pred -hHH----HHHHHHHHHhCCCeEEEEcCcchhhh
Q 002307 503 -SAR----IRDLFKRAKVNKPSVIFIDEIDALAT 531 (938)
Q Consensus 503 -~~~----vr~lF~~Ar~~~P~ILfIDEIDaL~~ 531 (938)
... +..+.+......|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 22233344556899999999998753
No 120
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.59 E-value=0.00024 Score=97.37 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=87.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 538 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~ 538 (938)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|.-+... .+..++|||+.+....-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vL---- 673 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERIL---- 673 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHHH----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHHH----
Confidence 46789999999999999999999999999999987443 22344455554433 45899999998643210
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHH------hc-C--CcCCCeEEEEEecCC----CCcCCccccCCCccceEEeccCCCh
Q 002307 539 DTTDHLYNAATQERETTLNQLLIE------LD-G--FDTGKGVIFLAATNR----RDLLDPALLRPGRFDRKIRIRAPNA 605 (938)
Q Consensus 539 ~~~~~~~~~~~~e~~~~LnqLL~e------LD-g--~~~~~~ViVIAATN~----pd~LDpALlRpGRFdr~I~V~lPd~ 605 (938)
....+- -+++...+.. ++ | +.-+.++.|++|.|. ...|+++|.. || +.|.+..||.
T Consensus 674 -------Svv~~q-i~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 674 -------SAVSQQ-IQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp -------HHHHHH-HHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred -------HHHHHH-HHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 001110 1111111111 11 2 122345678888884 4589999998 77 5699999999
Q ss_pred hhHHHHH
Q 002307 606 KGRTEIL 612 (938)
Q Consensus 606 eeR~eIL 612 (938)
+...+|+
T Consensus 743 ~~i~ei~ 749 (3245)
T 3vkg_A 743 EMIAQVM 749 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887775
No 121
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.57 E-value=5.3e-05 Score=89.90 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=25.2
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++++.-+.|.||+|+|||+|++.+++..
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345667779999999999999999999843
No 122
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.56 E-value=6.1e-05 Score=89.15 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=24.7
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++++.-+.|.||+|+|||+|++.+++-
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 34566667999999999999999999984
No 123
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.46 E-value=0.00012 Score=81.64 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=50.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH----HHhhhh------------hHHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE----VLVGVG------------SARIRDLFKRAK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~----~~vG~~------------~~~vr~lF~~Ar 514 (938)
|+.++.-++|+||||+|||+||..++..+ +.++++++...-.. ...|.. ...+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56667779999999999999999998754 56777776543211 112211 111122222334
Q ss_pred hCCCeEEEEcCcchhhh
Q 002307 515 VNKPSVIFIDEIDALAT 531 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~ 531 (938)
...|++|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999874
No 124
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.44 E-value=0.00027 Score=77.39 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=52.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCchh--HH----H--Hhhhh--------------
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEF--VE----V--LVGVG-------------- 502 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sel--~~----~--~vG~~-------------- 502 (938)
|+.++.-++|+||||+|||+|+..+|..+ +.++++++...- .. . ..|..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 46667779999999999999999999875 456777776542 11 0 01110
Q ss_pred -hH----HHHHHHHHHHh-CCCeEEEEcCcchhhhh
Q 002307 503 -SA----RIRDLFKRAKV-NKPSVIFIDEIDALATR 532 (938)
Q Consensus 503 -~~----~vr~lF~~Ar~-~~P~ILfIDEIDaL~~~ 532 (938)
.. .+..+....+. ..+.+|+||.+..+...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 11 12223334444 67899999999998743
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.44 E-value=0.0037 Score=78.63 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=100.8
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---C----CCEEEEeCch-
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---G----VPFYQMAGSE- 493 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g----~pfi~vs~se- 493 (938)
....+++|.++.+++|.+.+..- ...++-|.|+|+.|+|||+||+.++++. . ..++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34567899999988887765321 1224568899999999999999998752 1 1233444332
Q ss_pred ----hHHHH------hh----------hhhHHHHHHHHHHHhC--CCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHH
Q 002307 494 ----FVEVL------VG----------VGSARIRDLFKRAKVN--KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (938)
Q Consensus 494 ----l~~~~------vG----------~~~~~vr~lF~~Ar~~--~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e 551 (938)
....+ .+ .....+...+...... .+.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 11100 00 0112233333333333 37899999997521
Q ss_pred HHHHHHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccC-CChhhHHHHHHHHhcccccCCccCHHHH
Q 002307 552 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA-PNAKGRTEILKIHASKVKMSDSVDLSSY 630 (938)
Q Consensus 552 ~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~l-Pd~eeR~eILr~~l~~~~l~~dvdL~~L 630 (938)
.++.+ ..+..||.||.......... .....+.++. .+.++-.++|..+.............++
T Consensus 250 ----------~~~~~--~~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i 313 (1249)
T 3sfz_A 250 ----------VLKAF--DNQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSI 313 (1249)
T ss_dssp ----------HHTTT--CSSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHH
T ss_pred ----------HHHhh--cCCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHH
Confidence 01112 23446666777654332211 1234677775 7888888999887744322222236778
Q ss_pred HhhCCCCCHHHHHHH
Q 002307 631 AKNLPGWTGARLAQL 645 (938)
Q Consensus 631 A~~t~GfSgaDL~~L 645 (938)
++.+.|. |-.|+.+
T Consensus 314 ~~~~~gl-PLal~~~ 327 (1249)
T 3sfz_A 314 IKECKGS-PLVVSLI 327 (1249)
T ss_dssp HHHTTTC-HHHHHHH
T ss_pred HHHhCCC-HHHHHHH
Confidence 9999885 5555544
No 126
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.41 E-value=0.00017 Score=77.70 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=24.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGV 484 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~ 484 (938)
.++++|+||||||||++|++||+....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 458999999999999999999997654
No 127
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.40 E-value=0.00024 Score=79.41 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=51.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH----HHhhhh--------hHHHHHHHH----HHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE----VLVGVG--------SARIRDLFK----RAK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~----~~vG~~--------~~~vr~lF~----~Ar 514 (938)
|+.++.-++|+||||+|||+|+..++..+ +.++++++..+... ...|.. .....+++. ..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45666679999999999999999998864 66777777654211 111110 011122222 223
Q ss_pred hCCCeEEEEcCcchhhh
Q 002307 515 VNKPSVIFIDEIDALAT 531 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~ 531 (938)
...|++++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999998875
No 128
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.39 E-value=0.0003 Score=78.95 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=51.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHH----Hhhh-----------hhHHHHHHHHH-HH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV----LVGV-----------GSARIRDLFKR-AK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~----~vG~-----------~~~~vr~lF~~-Ar 514 (938)
|+.++..++|+||||+|||+||..+|..+ +.++++++...-... ..|. ....+...+.. .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56667789999999999999999998764 667888776432211 1121 11222223322 23
Q ss_pred hCCCeEEEEcCcchhhh
Q 002307 515 VNKPSVIFIDEIDALAT 531 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~ 531 (938)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46789999999999874
No 129
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.36 E-value=0.00046 Score=70.14 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
|+.++.-+.|.||+|+|||+|++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666679999999999999999999854
No 130
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.36 E-value=0.00041 Score=68.07 Aligned_cols=40 Identities=15% Similarity=0.362 Sum_probs=34.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~ 497 (938)
+.-|+|+|+||+|||+++++++..++.+++.++...+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 4568999999999999999999999999988776665543
No 131
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.34 E-value=0.00034 Score=92.57 Aligned_cols=79 Identities=23% Similarity=0.316 Sum_probs=56.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHh----hh------------hhHHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV----GV------------GSARIRDLFKRAK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~v----G~------------~~~~vr~lF~~Ar 514 (938)
|++.+..++|+||||||||+||.+++.++ |.+.++++..+..+... |. ++...+......+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46778889999999999999999997654 77888888766443322 11 1222333334445
Q ss_pred hCCCeEEEEcCcchhhhh
Q 002307 515 VNKPSVIFIDEIDALATR 532 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~~ 532 (938)
...|++|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 678999999999999554
No 132
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.28 E-value=0.0005 Score=76.82 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=52.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhH----HHHhhh-----------hhHHHHHHHHH-HH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV----EVLVGV-----------GSARIRDLFKR-AK 514 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~----~~~vG~-----------~~~~vr~lF~~-Ar 514 (938)
|+.++..++|+||||+|||+||..+|..+ +.++++++...-. ....|. ....+..++.. ++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46677789999999999999999998764 6678888763211 111121 11223333332 23
Q ss_pred hCCCeEEEEcCcchhhh
Q 002307 515 VNKPSVIFIDEIDALAT 531 (938)
Q Consensus 515 ~~~P~ILfIDEIDaL~~ 531 (938)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999874
No 133
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.25 E-value=0.0005 Score=76.07 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=50.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCchh--HH----HH--hhhh--------------
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEF--VE----VL--VGVG-------------- 502 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sel--~~----~~--vG~~-------------- 502 (938)
|+.++.-++|+||||+|||+||..+|..+ +.++++++.... .. .. .|..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45666678999999999999999999873 456777776542 11 10 1110
Q ss_pred -hHHH----HHHHHHHHh--CCCeEEEEcCcchhhhh
Q 002307 503 -SARI----RDLFKRAKV--NKPSVIFIDEIDALATR 532 (938)
Q Consensus 503 -~~~v----r~lF~~Ar~--~~P~ILfIDEIDaL~~~ 532 (938)
...+ ..+....+. ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 1111 122233444 67889999999998743
No 134
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.18 E-value=0.00029 Score=83.55 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.7
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++++.-+.|.||+|+|||+|++.+++-
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34566677999999999999999999983
No 135
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.15 E-value=0.00046 Score=68.43 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.8
Q ss_pred CCCceEEEEcCCCchHHHHHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKA 477 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArA 477 (938)
..+.-+.|.||+|+|||+|+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4455689999999999999994
No 136
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.00098 Score=68.42 Aligned_cols=39 Identities=31% Similarity=0.305 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh----cCCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE----AGVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e----lg~pfi~vs~s 492 (938)
|+.++.-++|+|+||+|||+||..+|.+ .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4566677999999999999999887643 36777777653
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.11 E-value=0.0023 Score=65.59 Aligned_cols=39 Identities=36% Similarity=0.480 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
|+.++.-++|+||||+|||+|+..++... +.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56667779999999999999998887643 6677777654
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.07 E-value=0.00066 Score=77.06 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=48.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---------CCCEEEEeCchh-HH-------HHhhhh--------------
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSEF-VE-------VLVGVG-------------- 502 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---------g~pfi~vs~sel-~~-------~~vG~~-------------- 502 (938)
|+.+..-++|+||||+|||+|++.++-.. +...++++..+. .. ...|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56677779999999999999999876443 234777776441 00 011110
Q ss_pred -h----HHHHHHHHHHHhCCCeEEEEcCcchhhh
Q 002307 503 -S----ARIRDLFKRAKVNKPSVIFIDEIDALAT 531 (938)
Q Consensus 503 -~----~~vr~lF~~Ar~~~P~ILfIDEIDaL~~ 531 (938)
. ..+..+........|.+|+||++..+..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 0 1112223333456899999999988754
No 139
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.06 E-value=0.0065 Score=71.10 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=93.7
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHH----hcCCCE---EEEeCch-----hH
Q 002307 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG----EAGVPF---YQMAGSE-----FV 495 (938)
Q Consensus 428 vG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~----elg~pf---i~vs~se-----l~ 495 (938)
+|.++.+++|.+.+..-. ....+.|.|+|+.|+|||+||+.+++ +....| +.++.+. ..
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499998888877664211 12245789999999999999999997 333222 2223222 11
Q ss_pred H---HH---hhhh-------------hHHHHHHHHHHHhCC-CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHH
Q 002307 496 E---VL---VGVG-------------SARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (938)
Q Consensus 496 ~---~~---vG~~-------------~~~vr~lF~~Ar~~~-P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~ 555 (938)
. .. .+.. ...+...+....... +++|+||+++... +
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~-----------------------~- 257 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE-----------------------T- 257 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH-----------------------H-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch-----------------------h-
Confidence 1 11 1111 111234444444454 8899999997621 0
Q ss_pred HHHHHHHhcCCcCCCeEEEEEecCCCCcCCccccCCCccceEEeccCCChhhHHHHHHHHhcccccCCcc--CHHHHHhh
Q 002307 556 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV--DLSSYAKN 633 (938)
Q Consensus 556 LnqLL~eLDg~~~~~~ViVIAATN~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr~~l~~~~l~~dv--dL~~LA~~ 633 (938)
+ .+ ... .+..||.||....... .. +-.+..+.++..+.++-.++|..+.......... ...++++.
T Consensus 258 ~-~~-~~~------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~ 325 (549)
T 2a5y_B 258 I-RW-AQE------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIEL 325 (549)
T ss_dssp H-HH-HHH------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHH
T ss_pred h-cc-ccc------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Confidence 0 11 111 3445666776533221 11 1134578899999999999998875432210111 13456666
Q ss_pred CCCCCHHHHHH
Q 002307 634 LPGWTGARLAQ 644 (938)
Q Consensus 634 t~GfSgaDL~~ 644 (938)
+.| .|-.|..
T Consensus 326 c~G-lPLAl~~ 335 (549)
T 2a5y_B 326 SSG-NPATLMM 335 (549)
T ss_dssp HTT-CHHHHHH
T ss_pred hCC-ChHHHHH
Confidence 766 3544443
No 140
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.04 E-value=0.00096 Score=74.14 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=32.4
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcC---------CCEEEEeCch
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGSE 493 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~elg---------~pfi~vs~se 493 (938)
.|+.++.-+.|+||||+|||+|++.++.... -..++++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4566777799999999999999999998762 3557776643
No 141
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.03 E-value=0.002 Score=73.75 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=38.3
Q ss_pred cccCCCCcccCccc-CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc---CC-CEEEE
Q 002307 415 RVDGSTGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GV-PFYQM 489 (938)
Q Consensus 415 ~~~~~~~v~F~dVv-G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el---g~-pfi~v 489 (938)
.+++..+.+|+++- ++.++ +..++..+... ...++|.|+||||||+++.+++..+ +. .++.+
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~a---v~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNA---FNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp -------CCSSCCCHHHHHH---HHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CccccCCCccccCCHHHHHH---HHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 44556678888875 44444 44444444332 1279999999999999999998866 33 45544
Q ss_pred eC
Q 002307 490 AG 491 (938)
Q Consensus 490 s~ 491 (938)
..
T Consensus 81 a~ 82 (459)
T 3upu_A 81 AP 82 (459)
T ss_dssp ES
T ss_pred cC
Confidence 43
No 142
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.00 E-value=0.0012 Score=71.79 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
|++++.-++|+||||+|||+||..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566677999999999999999999875
No 143
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.97 E-value=0.00043 Score=69.91 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=29.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
+.++..|+|.||||+|||++++++|+.++.+++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 44566799999999999999999999999998754
No 144
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.96 E-value=0.0017 Score=70.15 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 431 DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 431 deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
++..+.+.+++..+... ......|.-++|.||||+|||++++.++.+.+..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 44455555555543221 1223446679999999999999999999988555677776554
No 145
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.95 E-value=0.00099 Score=70.95 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
|+..+.-++|+||||+|||+|++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45566679999999999999999998643
No 146
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.94 E-value=0.00047 Score=68.22 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=29.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
++.|+|+||||||||++++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999998754
No 147
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.90 E-value=0.00039 Score=89.74 Aligned_cols=28 Identities=32% Similarity=0.732 Sum_probs=24.8
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
+.++++.-+-|+||+|+|||+|++++.+
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 3466777899999999999999999988
No 148
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.89 E-value=0.0012 Score=70.66 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=30.8
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeC
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAG 491 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 491 (938)
+|+.++.-++|.||||+|||+|++.+|... |.++++++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 456777789999999999999999998864 446665543
No 149
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.87 E-value=0.00095 Score=74.59 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=44.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeC-chhHH---------HHhhhhhHHHHHHHHHHHhCCCeEEEEc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAG-SEFVE---------VLVGVGSARIRDLFKRAKVNKPSVIFID 524 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~-sel~~---------~~vG~~~~~vr~lF~~Ar~~~P~ILfID 524 (938)
..++|.||+|+|||++.+++++.. +..++.+.- .++.. ...+.....+...+..|....|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 358999999999999999998855 233333211 11100 0011112235567888888999999999
Q ss_pred Ccc
Q 002307 525 EID 527 (938)
Q Consensus 525 EID 527 (938)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 150
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.87 E-value=0.00076 Score=66.79 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=29.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
...+.-|+|.|+||+|||++++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456679999999999999999999999988765
No 151
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.84 E-value=0.0019 Score=67.99 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=33.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
...|..++|.|+||+|||++++.++..++.+++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3456779999999999999999999999877777777665
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.83 E-value=0.00079 Score=66.78 Aligned_cols=40 Identities=33% Similarity=0.504 Sum_probs=33.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
+..+.-+.|.||||+|||++++++++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4556679999999999999999999988778788876654
No 153
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.82 E-value=0.00032 Score=90.29 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=25.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++++.-+.|+||+|+|||+|++++++..
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677779999999999999999998854
No 154
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.81 E-value=0.0076 Score=71.23 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=53.9
Q ss_pred eEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCC--cCCccccCCCccce
Q 002307 519 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD--LLDPALLRPGRFDR 596 (938)
Q Consensus 519 ~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd--~LDpALlRpGRFdr 596 (938)
.+|+|||++.+.... ..+....+.++... ...-+|.+|.+|.+|. .++..++. -|..
T Consensus 345 ivvVIDE~~~L~~~~---------------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~ 403 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---------------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPT 403 (574)
T ss_dssp EEEEESCCTTHHHHT---------------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCE
T ss_pred EEEEEeCHHHHhhhh---------------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhcc
Confidence 589999999886431 12334455555544 3456899999999987 78887776 6888
Q ss_pred EEeccCCChhhHHHHHH
Q 002307 597 KIRIRAPNAKGRTEILK 613 (938)
Q Consensus 597 ~I~V~lPd~eeR~eILr 613 (938)
.|.+...+..+...||.
T Consensus 404 RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 404 RIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEECCSCHHHHHHHHS
T ss_pred EEEEEcCCHHHHHHhcC
Confidence 88999998888877763
No 155
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.81 E-value=0.0068 Score=69.65 Aligned_cols=152 Identities=20% Similarity=0.249 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCc--------CCCeEEEEE
Q 002307 505 RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--------TGKGVIFLA 576 (938)
Q Consensus 505 ~vr~lF~~Ar~~~P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~--------~~~~ViVIA 576 (938)
..+..++.|..+ +|||+||||.++.+.++.. .+...+...+.||..+++-. ..++|++|+
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~~~----------~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~ 307 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEYSG----------ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 307 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSCSS----------SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCCCC----------CCchHHHHHHHHHHHhcccccccccceecCCcEEEEe
Confidence 345555555333 3899999999986533211 22223345566777777631 246788998
Q ss_pred ec-----CCCCcCCccccCCCccceEEeccCCChhhHHHHHH---H-----Hhcc-----cccC-CccCHHHHHh-----
Q 002307 577 AT-----NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILK---I-----HASK-----VKMS-DSVDLSSYAK----- 632 (938)
Q Consensus 577 AT-----N~pd~LDpALlRpGRFdr~I~V~lPd~eeR~eILr---~-----~l~~-----~~l~-~dvdL~~LA~----- 632 (938)
|. |..+ +-|.|+. ||+.+|.++.++.++..+|+. . +... ..+. .+..+..+++
T Consensus 308 ~gaf~~~~~~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~ 384 (444)
T 1g41_A 308 SGAFQVARPSD-LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 384 (444)
T ss_dssp EECCSSCCGGG-SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHH
T ss_pred ccccccCChhh-cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHh
Confidence 87 4444 5577876 999999999999999999983 1 1111 1111 1112444554
Q ss_pred --hCCCCCHHHHHHHHHHHHHHHHHhC------CcccchhhHHHHHH
Q 002307 633 --NLPGWTGARLAQLVQEAALVAVRKG------HESILSSDMDDAVD 671 (938)
Q Consensus 633 --~t~GfSgaDL~~Lv~eA~l~A~r~~------~~~It~edl~~Ai~ 671 (938)
.|.....+.|++++..++..+..+- .-.|+.+++...+.
T Consensus 385 ~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 385 NEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 431 (444)
T ss_dssp HHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHT
T ss_pred ccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcC
Confidence 2445456666666666555443331 12366666665554
No 156
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0014 Score=72.29 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=48.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeCchhHH----HHhhhh-----------hHHH-HHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVE----VLVGVG-----------SARI-RDLFKR 512 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~sel~~----~~vG~~-----------~~~v-r~lF~~ 512 (938)
|+.++ -++|+||||+|||+|+-.++.++ +..+++++..+-.. .-.|.. ...+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34444 58999999999999988876544 56788887654221 111211 1111 122222
Q ss_pred ---HHhCCCeEEEEcCcchhhh
Q 002307 513 ---AKVNKPSVIFIDEIDALAT 531 (938)
Q Consensus 513 ---Ar~~~P~ILfIDEIDaL~~ 531 (938)
.+...|.+|+||-|.++.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2456899999999999974
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.74 E-value=0.0022 Score=73.53 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAG 491 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~ 491 (938)
|+.++.-++|.|+||+|||+|+..+|..+ |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56677779999999999999999998754 567877764
No 158
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.66 E-value=0.0011 Score=64.15 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=27.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
-|+|.||||+|||++++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999999887544
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.66 E-value=0.0093 Score=69.72 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=51.7
Q ss_pred CCe-EEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEecCCCC--cCCccccCCCc
Q 002307 517 KPS-VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD--LLDPALLRPGR 593 (938)
Q Consensus 517 ~P~-ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAATN~pd--~LDpALlRpGR 593 (938)
.|. +|+|||+..+... ........+..+... ...-++.+|.+|+++. .++..++. .
T Consensus 296 lP~ivlvIDE~~~ll~~---------------~~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n 354 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMT---------------VGKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--N 354 (512)
T ss_dssp CCEEEEEEETHHHHHHH---------------HHHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--H
T ss_pred CCcEEEEEeCHHHHHhh---------------hhHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--h
Confidence 354 8999999887532 112233444444333 2334788888999987 67777766 7
Q ss_pred cceEEeccCCChhhHHHHHH
Q 002307 594 FDRKIRIRAPNAKGRTEILK 613 (938)
Q Consensus 594 Fdr~I~V~lPd~eeR~eILr 613 (938)
|...|.+...+..+...|+.
T Consensus 355 ~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 355 IPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp CCEEEEECCSSHHHHHHHHS
T ss_pred cCCeEEEEcCCHHHHHHhcC
Confidence 88888999999988887774
No 160
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.63 E-value=0.0012 Score=65.21 Aligned_cols=33 Identities=33% Similarity=0.662 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.+..|+|+|+||+|||+++++++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 455799999999999999999999999887753
No 161
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.57 E-value=0.0012 Score=65.93 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh-cCCCEEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGE-AGVPFYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~e-lg~pfi~v 489 (938)
.+..|+|+|+||||||++++.+|.. .|.+++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3456999999999999999999999 68777643
No 162
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.57 E-value=0.002 Score=69.38 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++.-+.|.||+|+|||||++++++-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 455566899999999999999999983
No 163
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.57 E-value=0.0014 Score=63.88 Aligned_cols=31 Identities=29% Similarity=0.694 Sum_probs=27.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
+..+.|+||||+|||++++.+|+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3469999999999999999999999976653
No 164
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.56 E-value=0.022 Score=59.89 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=26.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
-.|++.|+||+|||+++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 369999999999999999998765 666655544
No 165
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.54 E-value=0.0015 Score=66.08 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=23.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCCEEEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQM 489 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el---g~pfi~v 489 (938)
.-++++||+|+|||+++..++.++ +.+++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999996666543 5555544
No 166
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.53 E-value=0.0035 Score=66.31 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=31.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh---cCCCEEEEeCchhH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGSEFV 495 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e---lg~pfi~vs~sel~ 495 (938)
+.-|+|+|+||+|||++|+.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 346899999999999999999997 78888877765554
No 167
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.51 E-value=0.0014 Score=64.88 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=27.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
.|+|+|+||+|||++|+.||..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999999999999875
No 168
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.51 E-value=0.0041 Score=66.70 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=23.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||+|++.|++-
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555667899999999999999999983
No 169
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.50 E-value=0.0015 Score=63.75 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=28.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
..|+|.|+||||||++++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999998753
No 170
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.49 E-value=0.0036 Score=70.38 Aligned_cols=26 Identities=50% Similarity=0.800 Sum_probs=22.7
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
+..+.-+.|.||+|||||||.++||+
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHc
Confidence 44555688999999999999999998
No 171
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.49 E-value=0.0016 Score=64.16 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=26.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
.++|.|+||+|||+++++||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 172
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.48 E-value=0.0041 Score=71.01 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s 492 (938)
|+.++.-++|.|+||+|||+||..+|... +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56777779999999999999999997753 5688877653
No 173
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.47 E-value=0.0042 Score=69.51 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=23.0
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..+.-+.|.||+|||||||.++||+-
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 445556889999999999999999983
No 174
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.46 E-value=0.0034 Score=67.25 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||||++++++-
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3455666899999999999999999983
No 175
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.46 E-value=0.01 Score=64.87 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=47.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH-------HH---hh----------hhhHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-------VL---VG----------VGSARIRDLFK 511 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~-------~~---vG----------~~~~~vr~lF~ 511 (938)
...+.-++|+||+|+|||+++..+|..+ +..+..+++..+.. .+ .+ .......+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3556779999999999999999999865 55565555433211 11 11 01111233556
Q ss_pred HHHhCCCeEEEEcCcch
Q 002307 512 RAKVNKPSVIFIDEIDA 528 (938)
Q Consensus 512 ~Ar~~~P~ILfIDEIDa 528 (938)
.+....|.+|+||+...
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 66777889999998753
No 176
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.43 E-value=0.0019 Score=65.02 Aligned_cols=33 Identities=39% Similarity=0.593 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.|.-|+|+|+||+|||++++.|+..++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345699999999999999999999999887654
No 177
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.42 E-value=0.0013 Score=70.21 Aligned_cols=72 Identities=24% Similarity=0.421 Sum_probs=44.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCc-hhH---------HHHhhhhhHHHHHHHHHHHhCCCeEE
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS-EFV---------EVLVGVGSARIRDLFKRAKVNKPSVI 521 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s-el~---------~~~vG~~~~~vr~lF~~Ar~~~P~IL 521 (938)
.++.-++|.||+|+|||++++++++.. ...++....+ ++. ...+|.....++..+..+....|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 344568999999999999999999854 2222221100 000 00011112345677777777799999
Q ss_pred EEcCcc
Q 002307 522 FIDEID 527 (938)
Q Consensus 522 fIDEID 527 (938)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999984
No 178
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.41 E-value=0.0019 Score=67.77 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
+.++.-+.|.||+|+|||||++++++
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45556689999999999999999998
No 179
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.41 E-value=0.0022 Score=72.37 Aligned_cols=27 Identities=41% Similarity=0.722 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..+.-+.|.||+|||||||.++||+-
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 445556889999999999999999983
No 180
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.39 E-value=0.0017 Score=64.11 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=29.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~ 495 (938)
|.-|+|.|+||+|||++++.++..++.+++. ..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~--~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS--AGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe--HHHHH
Confidence 4568999999999999999999999987654 34443
No 181
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.38 E-value=0.0038 Score=65.99 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++.-+.|.||+|+|||+|++++++-
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455566899999999999999999884
No 182
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.37 E-value=0.0025 Score=62.74 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.+.-|+|.|+||+|||++++.++..++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 345799999999999999999999999776643
No 183
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.37 E-value=0.0016 Score=62.57 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=25.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
-|+|.||||+|||++++.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8889887754
No 184
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.36 E-value=0.0019 Score=70.75 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=24.8
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++++.-+.|.||+|+|||+|++.|++-
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 34566677999999999999999999883
No 185
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.35 E-value=0.0026 Score=71.25 Aligned_cols=27 Identities=44% Similarity=0.635 Sum_probs=23.0
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..+.-+.|.||+|||||||.++||+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 445556889999999999999999983
No 186
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.33 E-value=0.002 Score=63.92 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.+.-|+|.|+||+|||++++.+|..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345799999999999999999999999887654
No 187
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.33 E-value=0.031 Score=64.16 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH-------HH---hh----------hhhHHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-------VL---VG----------VGSARIRDLFKRA 513 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~-------~~---vG----------~~~~~vr~lF~~A 513 (938)
+|.-++++|++|+|||+++..+|..+ |..+..+++..+.. .+ .+ .....++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999998755 66666666543211 11 01 1223345677778
Q ss_pred HhCCCeEEEEcCcch
Q 002307 514 KVNKPSVIFIDEIDA 528 (938)
Q Consensus 514 r~~~P~ILfIDEIDa 528 (938)
+...+.+|+||....
T Consensus 179 ~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HhCCCCEEEEECCCc
Confidence 777788999998744
No 188
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.32 E-value=0.0036 Score=70.26 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.3
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+..+.-+.|.||+|+|||||++++++
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 345556689999999999999999998
No 189
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.32 E-value=0.0068 Score=64.32 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++.-+.|.||+|+|||||.+++++-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345556889999999999999999883
No 190
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.31 E-value=0.0023 Score=67.69 Aligned_cols=32 Identities=38% Similarity=0.434 Sum_probs=28.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 491 (938)
-++|.||||+|||++|++||++.+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887654
No 191
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.30 E-value=0.0073 Score=65.91 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=31.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
|+.++.-++|.|+||+|||+|+..+|..+ +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56677779999999999999999998754 467777764
No 192
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.29 E-value=0.0013 Score=84.62 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=24.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.++++.-+-|+||+|+|||+|++++++
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 456667799999999999999999998
No 193
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.28 E-value=0.0067 Score=71.82 Aligned_cols=33 Identities=39% Similarity=0.483 Sum_probs=26.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
+.++|+||||||||+++++++..+ +.+++.+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 468999999999999999998744 667766544
No 194
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.28 E-value=0.0027 Score=63.91 Aligned_cols=31 Identities=39% Similarity=0.722 Sum_probs=27.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
+.-|+|.|+||+|||++++.|++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999987765
No 195
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.26 E-value=0.0025 Score=71.50 Aligned_cols=74 Identities=23% Similarity=0.418 Sum_probs=46.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcC----CCEEEEeCc-hhH-H---HH-----hhhhhHHHHHHHHHHHhCCCe
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAGS-EFV-E---VL-----VGVGSARIRDLFKRAKVNKPS 519 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg----~pfi~vs~s-el~-~---~~-----vG~~~~~vr~lF~~Ar~~~P~ 519 (938)
.+.++..++|+||+|+|||++++++++... ..++.+... ++. . .+ +|.....++..+..+....|.
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 345556799999999999999999998542 233332211 000 0 00 111222345677777778999
Q ss_pred EEEEcCcc
Q 002307 520 VIFIDEID 527 (938)
Q Consensus 520 ILfIDEID 527 (938)
+|++||+-
T Consensus 212 ~illdE~~ 219 (372)
T 2ewv_A 212 VIFVGEMR 219 (372)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999984
No 196
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.26 E-value=0.0029 Score=64.65 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.+..|+|.|+||+|||++++.||..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 345799999999999999999999999877653
No 197
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.26 E-value=0.0011 Score=74.13 Aligned_cols=27 Identities=44% Similarity=0.588 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..+.-+.|.||+|||||||.++||+-
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 445556889999999999999999983
No 198
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.26 E-value=0.0032 Score=62.09 Aligned_cols=36 Identities=36% Similarity=0.575 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
.+.-+.|.|++|+|||++++.++..+ |.+++.+++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 34568899999999999999999987 8999887643
No 199
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.26 E-value=0.0025 Score=70.35 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=30.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 492 (938)
+..++|+||+|+|||++++.||.+++.+++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 35799999999999999999999999888877643
No 200
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.25 E-value=0.0049 Score=64.12 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++.-+.|.||+|+|||||++++++-
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445556889999999999999999984
No 201
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.24 E-value=0.0023 Score=63.16 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=26.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
..|+|.|+||+|||++++.++..++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 458999999999999999999999877653
No 202
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.23 E-value=0.0017 Score=69.23 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||||++++++-
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3455566899999999999999999984
No 203
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.22 E-value=0.0022 Score=62.55 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=24.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHH-hcCCCEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAG-EAGVPFY 487 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~-elg~pfi 487 (938)
|.-|+|.|+||+|||++|+.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 34689999999999999999998 4554433
No 204
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.22 E-value=0.0022 Score=65.91 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.+.-|+|.|+||+|||++++.||..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345799999999999999999999999877653
No 205
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.21 E-value=0.0028 Score=61.62 Aligned_cols=29 Identities=31% Similarity=0.647 Sum_probs=26.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
.|+|.|+||+|||++++.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999988764
No 206
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.21 E-value=0.0023 Score=62.81 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 487 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi 487 (938)
+.-|+|.|+||+|||++++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999987
No 207
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.20 E-value=0.019 Score=59.84 Aligned_cols=38 Identities=29% Similarity=0.293 Sum_probs=30.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc-hhHHH
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-EFVEV 497 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s-el~~~ 497 (938)
.++++||+|+|||.++.+++...+.+++.+... ++...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q 148 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQ 148 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHH
Confidence 489999999999999999999888777776544 44433
No 208
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.19 E-value=0.0038 Score=69.56 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..+.-+.|.||+|||||||.++||+-
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 445556889999999999999999983
No 209
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.18 E-value=0.0034 Score=63.35 Aligned_cols=37 Identities=35% Similarity=0.659 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchh
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel 494 (938)
..+.-+.|.||+|+|||+++++|++..|..++ ++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i--~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA--EADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE--EGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE--ccccc
Confidence 34567999999999999999999999976554 44443
No 210
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.18 E-value=0.0024 Score=63.41 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=27.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
+.-|+|.|+||+|||++++.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45699999999999999999999999766543
No 211
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.17 E-value=0.0026 Score=64.62 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=26.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.|+|.||||+|||++|+.|+.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999887654
No 212
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.15 E-value=0.0043 Score=69.48 Aligned_cols=27 Identities=41% Similarity=0.524 Sum_probs=23.0
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..+.-+.|.||+|||||||.++||+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 445556889999999999999999983
No 213
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.15 E-value=0.0036 Score=61.33 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=26.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
+..++|.||||+|||++++.+++..|.+++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4468999999999999999999998876553
No 214
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.14 E-value=0.011 Score=63.29 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=24.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+..+.-+.|.||+|+|||||++++++-.
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34555668999999999999999999843
No 215
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.14 E-value=0.0027 Score=64.33 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=26.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.|+|.||||+|||++|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887754
No 216
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.13 E-value=0.003 Score=64.64 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=27.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
..|+|.|+||+|||++++.||..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999887654
No 217
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.11 E-value=0.003 Score=62.14 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=23.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg 483 (938)
.-|+|.|+||+|||++++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 218
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.10 E-value=0.0052 Score=64.54 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++-.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566679999999999999999999843
No 219
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.09 E-value=0.0031 Score=61.16 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=26.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
.|+|.|+||+|||++++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999988874
No 220
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.09 E-value=0.0032 Score=63.18 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=27.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
+.-|+|.|+||+|||++++.++..++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 45689999999999999999999999876654
No 221
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.05 E-value=0.0033 Score=65.91 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.|.-|+|.||||+|||++|+.|+.+.+.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456799999999999999999999998777644
No 222
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.05 E-value=0.0045 Score=64.83 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=43.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch-------hHHHHhhhh-----hHHHHHHHHHHHh----CCCe
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE-------FVEVLVGVG-----SARIRDLFKRAKV----NKPS 519 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se-------l~~~~vG~~-----~~~vr~lF~~Ar~----~~P~ 519 (938)
.-++++||+|+|||+++..++.++ +..++.++... +.+. .|.. .....++++.+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 347888999999999998887765 56666653221 0000 1110 0112345555554 3578
Q ss_pred EEEEcCcchh
Q 002307 520 VIFIDEIDAL 529 (938)
Q Consensus 520 ILfIDEIDaL 529 (938)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999864
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.04 E-value=0.021 Score=65.50 Aligned_cols=72 Identities=24% Similarity=0.213 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH----------HHhhh----------hhHHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE----------VLVGV----------GSARIRDLFKRA 513 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~----------~~vG~----------~~~~vr~lF~~A 513 (938)
+|.-+++.||+|+|||+++..+|..+ +..+..+++.-+.. ...|. .....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678999999999999999998755 66666665442211 01111 111234455666
Q ss_pred HhCCCeEEEEcCcch
Q 002307 514 KVNKPSVIFIDEIDA 528 (938)
Q Consensus 514 r~~~P~ILfIDEIDa 528 (938)
....+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 666788999998754
No 224
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.03 E-value=0.021 Score=66.51 Aligned_cols=76 Identities=24% Similarity=0.225 Sum_probs=52.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch----hHHHH------------hh------------hh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE----FVEVL------------VG------------VG 502 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se----l~~~~------------vG------------~~ 502 (938)
++.++.-++|.||||+|||+|++.++... |.+.+++...+ +.... .| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 55666779999999999999999998754 45555554332 11110 00 13
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCcchh
Q 002307 503 SARIRDLFKRAKVNKPSVIFIDEIDAL 529 (938)
Q Consensus 503 ~~~vr~lF~~Ar~~~P~ILfIDEIDaL 529 (938)
....+.++..+....|.+|+||=+..+
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 345677788888889999999955444
No 225
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.02 E-value=0.0046 Score=63.98 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=28.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
+..|+|.|+||+|||++++.||.+++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35699999999999999999999999877653
No 226
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.02 E-value=0.0056 Score=65.01 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++.-+.|.||+|+|||+|.+++++-.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555668999999999999999999853
No 227
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.99 E-value=0.0063 Score=79.79 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=70.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch-----hHHH-----------HhhhhhHHHHHHHHHHHhCC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE-----FVEV-----------LVGVGSARIRDLFKRAKVNK 517 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se-----l~~~-----------~vG~~~~~vr~lF~~Ar~~~ 517 (938)
.++.|+++||+|||||+||-.++.++ |-...+++... +... ....++..+..+...++..+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~ 1509 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1509 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCC
Confidence 33449999999999999998876543 66677766532 1111 12335667777777888899
Q ss_pred CeEEEEcCcchhhhhhcCccCCcchhhhhhhhHHHHHHHHHHHHHhcCCcCCCeEEEEEe
Q 002307 518 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (938)
Q Consensus 518 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~~~~~e~~~~LnqLL~eLDg~~~~~~ViVIAA 577 (938)
|++|+||.+.+|.++..-. +++.|... .-..+.+.+.|..|.+.-...++.+|.+
T Consensus 1510 ~~~vvvDsv~al~~~~e~~-~~~~~~~~----~~~ar~m~~~lr~l~~~~~~~~~~~i~~ 1564 (1706)
T 3cmw_A 1510 VDVIVVDSVAALTPKAEIE-GEIGDSHM----GLAARMMSQAMRKLAGNLKQSNTLLIFI 1564 (1706)
T ss_dssp CSEEEESCSTTCCCTTTTC--------C----CHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCEEEEccHHhCCcccccc-ccccccch----hHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 9999999999998764321 11111110 1123445555666555444445555543
No 228
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.96 E-value=0.029 Score=57.72 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=46.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCCEEEE---eCc------hhHHHHh-----------------hhhhHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQM---AGS------EFVEVLV-----------------GVGSARIRDL 509 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el---g~pfi~v---s~s------el~~~~v-----------------G~~~~~vr~l 509 (938)
..|++++++|.|||++|-++|-++ |..+..+ .+. .+...+. .......+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358999999999999999998766 6776665 221 2333220 0012334555
Q ss_pred HHHHHh----CCCeEEEEcCcchhh
Q 002307 510 FKRAKV----NKPSVIFIDEIDALA 530 (938)
Q Consensus 510 F~~Ar~----~~P~ILfIDEIDaL~ 530 (938)
+..++. ...++|+|||+-...
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al 133 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMV 133 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccc
Confidence 555543 356899999997643
No 229
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.95 E-value=0.0036 Score=64.03 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~ 495 (938)
.+..|+|.||||+|||++++.||..++.+++ +.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i--~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI--SAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC--CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee--cHHHHH
Confidence 3457999999999999999999999997654 444443
No 230
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.92 E-value=0.0043 Score=64.69 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
.+.++-|+|.||||+||+|.|+.||...+.+.+ +..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHHH
Confidence 355677899999999999999999999987765 4444443
No 231
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.88 E-value=0.0066 Score=61.20 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
..+.-+.|.||+|+|||++++++++.+ |...+.+++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 345678999999999999999999987 5544455543
No 232
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.87 E-value=0.019 Score=71.51 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
...+.-++|+||.|+|||++.|.++.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHH
Confidence 34456699999999999999999875
No 233
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.86 E-value=0.0017 Score=71.57 Aligned_cols=72 Identities=24% Similarity=0.270 Sum_probs=49.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCch-hH----HH---HhhhhhHHHHHHHHHHHhCCCeEEEEcCc
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSE-FV----EV---LVGVGSARIRDLFKRAKVNKPSVIFIDEI 526 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~se-l~----~~---~vG~~~~~vr~lF~~Ar~~~P~ILfIDEI 526 (938)
++..++|.||+|+|||+|++++++... .-.+.+.+.. +. .. ++..+..+.+..+..|....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 345799999999999999999998653 2234443321 10 00 11003456788888998899999999997
Q ss_pred ch
Q 002307 527 DA 528 (938)
Q Consensus 527 Da 528 (938)
..
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 54
No 234
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.82 E-value=0.004 Score=70.43 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+..+.-+.|.||+|||||+|.++|++
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 355666799999999999999999997
No 235
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.80 E-value=0.006 Score=59.93 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=26.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcC---CCEEEEeCch
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSE 493 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg---~pfi~vs~se 493 (938)
-|+|.|+||+|||++++.|+..++ .++..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 489999999999999999999875 3455555443
No 236
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.78 E-value=0.0062 Score=61.98 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=27.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
..|.|.||+|+||||+++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999987764
No 237
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.78 E-value=0.007 Score=59.61 Aligned_cols=31 Identities=29% Similarity=0.230 Sum_probs=27.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc---CCCEEEEe
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 490 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el---g~pfi~vs 490 (938)
-|.|.|+||+|||++++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89988765
No 238
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.75 E-value=0.0072 Score=60.33 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=29.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc-CCCEEEEeC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAG 491 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el-g~pfi~vs~ 491 (938)
+.-|.|.|++|+|||++++.++..+ |.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4569999999999999999999998 578877653
No 239
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.75 E-value=0.008 Score=60.51 Aligned_cols=28 Identities=39% Similarity=0.519 Sum_probs=24.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
.+.|.||+|+|||++++.+++ +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 578999999999999999998 8888763
No 240
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.74 E-value=0.038 Score=64.37 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=30.5
Q ss_pred cc-CCCCCceEEEEcCCCchHHHHHHH--HHHhc--CCCEEEEeCch
Q 002307 452 KM-GIKPPHGVLLEGPPGCGKTLVAKA--IAGEA--GVPFYQMAGSE 493 (938)
Q Consensus 452 ~l-G~~~p~GVLL~GPPGTGKT~LArA--LA~el--g~pfi~vs~se 493 (938)
.+ ++.++..++|.||+|+|||+|++. +++-. +..-+++++.+
T Consensus 32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 32 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 45 466777899999999999999999 44432 44556665543
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.67 E-value=0.042 Score=59.59 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=42.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCchh-------HHHHh---h------hhhHHHHHHHHHHHhC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEF-------VEVLV---G------VGSARIRDLFKRAKVN 516 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sel-------~~~~v---G------~~~~~vr~lF~~Ar~~ 516 (938)
.+..++|.||+|+|||+++..+|..+ |..+..+++..+ ...+. | .....++..+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 46679999999999999999998754 556666655432 11110 1 1122344444443 5
Q ss_pred CCeEEEEcC
Q 002307 517 KPSVIFIDE 525 (938)
Q Consensus 517 ~P~ILfIDE 525 (938)
.|.+|+||-
T Consensus 182 ~~dlvIiDT 190 (296)
T 2px0_A 182 EYDHVFVDT 190 (296)
T ss_dssp GSSEEEEEC
T ss_pred CCCEEEEeC
Confidence 678999994
No 242
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.67 E-value=0.0061 Score=60.56 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=26.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
-|.|.|++|+||||+++.|++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987764
No 243
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.66 E-value=0.0053 Score=68.49 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..+.-+.|.||+|||||||.++||+-
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 445556889999999999999999983
No 244
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.66 E-value=0.012 Score=59.97 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=31.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG 500 (938)
-|.|+|++|||||++++.++..+|.+++. +.++.....+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHHHHHH
Confidence 48899999999999999999998988764 4555544444
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.65 E-value=0.0068 Score=61.67 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=26.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.|+|.|+||+|||++++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 379999999999999999999999887654
No 246
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.63 E-value=0.0075 Score=62.79 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=27.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
|.-+.|.||||+||||+++.|+..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5679999999999999999999999876553
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.63 E-value=0.0052 Score=61.71 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
-|.|.|++|+|||++++.+++ .|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 88777654
No 248
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.60 E-value=0.0072 Score=62.31 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=28.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhH
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~ 495 (938)
-|+|.||||+||+|.|+.||...+.+.++ ..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is--tGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS--TGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc--HHHHH
Confidence 37899999999999999999999987654 34444
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.54 E-value=0.012 Score=59.82 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=21.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.|+|.||+|+|||+|++.|..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998754
No 250
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.54 E-value=0.0095 Score=58.99 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=26.7
Q ss_pred EEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
|.|.|++|+||||+++.++..+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 999886643
No 251
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.52 E-value=0.019 Score=66.44 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=32.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 492 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s 492 (938)
|+.++.-++|.|+||+|||+|+..+|..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 56777789999999999999999998764 5678877753
No 252
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.48 E-value=0.007 Score=68.02 Aligned_cols=27 Identities=44% Similarity=0.735 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..+.-+.|.||+|||||||.++||+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 445556889999999999999999984
No 253
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.43 E-value=0.01 Score=59.37 Aligned_cols=30 Identities=37% Similarity=0.686 Sum_probs=27.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
.|.|.|++|+|||++++.+|..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999888753
No 254
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.41 E-value=0.0088 Score=61.58 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=25.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
-|+|.|+||+|||++++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999876654
No 255
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.36 E-value=0.011 Score=58.77 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=29.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
+..|.|.|++|+|||++++.|+.. |.+++. ..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id--~d~~~~ 43 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD--LDALAA 43 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc--ccHHHH
Confidence 456899999999999999999998 877764 444443
No 256
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.33 E-value=0.007 Score=64.30 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=28.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
+..|.|.|++|+|||++++.+|+.++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45799999999999999999999999987753
No 257
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.23 E-value=0.015 Score=60.94 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCC--------EEEEeCchhH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------FYQMAGSEFV 495 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~p--------fi~vs~sel~ 495 (938)
.+.-|.|.|++|+|||++|+.|+..++.+ +..++..++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34568999999999999999999999876 3356666554
No 258
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.22 E-value=0.0059 Score=61.36 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVP 485 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~p 485 (938)
.+.-|+|.|+||+|||++++.++..++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999987543
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.20 E-value=0.016 Score=58.46 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
...+.-++|.||||+|||++++.|+...+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34567799999999999999999999874
No 260
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.16 E-value=0.012 Score=58.79 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=26.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCC--EEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQM 489 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~p--fi~v 489 (938)
+.-|+|.|+||+|||++++.|+..++.. ++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 3468999999999999999999988763 5443
No 261
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.15 E-value=0.038 Score=69.00 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~ 480 (938)
.-++|+||+|+|||++.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4489999999999999999954
No 262
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.13 E-value=0.083 Score=58.58 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
|+.++.-++|.|+||+|||+|+..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56677779999999999999999998764 677777764
No 263
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.12 E-value=0.1 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=18.1
Q ss_pred CceEEEEcCCCchHHHHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIA 479 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA 479 (938)
++.+++.||+|||||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999998766654
No 264
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.11 E-value=0.012 Score=58.65 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.-+.|.||+|+|||++++.+++..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 455678999999999999999999876
No 265
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.11 E-value=0.12 Score=51.50 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.+++.+|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999998877764
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.09 E-value=0.014 Score=61.40 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=27.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
|..+.|.||||+|||++++.||..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4569999999999999999999999987654
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.05 E-value=0.019 Score=58.24 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
..+.-+.|.||+|+|||||+++|++...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455688999999999999999999764
No 268
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.04 E-value=0.021 Score=56.52 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
..+.-++|.|+||+|||++++.++..+ +.++..+++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345668999999999999999999876 445555553
No 269
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.01 E-value=0.021 Score=65.49 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
|+.++.-++|.|+||+|||+||..+|..+ |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56677779999999999999999998755 678887765
No 270
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.00 E-value=0.018 Score=58.67 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
++.-+.|.||+|+|||++++.|++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455689999999999999999999764
No 271
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.00 E-value=0.01 Score=59.85 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=26.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc-CCCEEE
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQ 488 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el-g~pfi~ 488 (938)
..+.-+.|.|+||+|||++++.+++.. +++++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 344568899999999999999999987 555544
No 272
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.99 E-value=0.0071 Score=60.79 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
.+.-|+|.|+||+|||++++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999764
No 273
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.97 E-value=0.066 Score=63.70 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++++|+||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999998877653
No 274
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.96 E-value=0.018 Score=60.59 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=27.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
+..|.|.||+|+|||++++.||..+|.+++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468999999999999999999999987763
No 275
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.93 E-value=0.14 Score=50.90 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.5
Q ss_pred ceEEEEcCCCchHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LAr 476 (938)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 276
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.92 E-value=0.016 Score=58.79 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=30.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCch
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSE 493 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~se 493 (938)
..+.-++|.|++|+|||++++.+++.+ |.+++.+++..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 345568999999999999999999865 46677776443
No 277
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.89 E-value=0.016 Score=57.48 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=22.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
++-+.|.||+|+|||+|++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998753
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.81 E-value=0.02 Score=58.25 Aligned_cols=30 Identities=37% Similarity=0.423 Sum_probs=25.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
+.-|.|.|++|+|||++++.++. +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 44689999999999999999998 8877654
No 279
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.81 E-value=0.021 Score=59.07 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
..+..|.|.|++|+|||++++.+++.+|.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 345568999999999999999999999987764
No 280
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.78 E-value=0.014 Score=64.85 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 492 (938)
++-|+|.||+|+|||+|+..||.+++.+++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999999888876544
No 281
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.75 E-value=0.29 Score=56.99 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+..+.-++|.||+|+|||+|++.||+.+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34556679999999999999999999865
No 282
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.73 E-value=0.049 Score=60.81 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++ -+.|+||+|+|||+|.++|+.-+
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 68899999999999999995543
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.71 E-value=0.018 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.-+.|.||+|+|||+|++.+++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44568899999999999999999975
No 284
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.69 E-value=0.022 Score=57.78 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=27.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
..+.|.|++|+|||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999999887653
No 285
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.69 E-value=0.016 Score=64.89 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=36.2
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 428 vG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
+.++...+.+.+.+.....+. ....++|+||||+|||++++++|+.++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g--------~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDN--------YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTC--------SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccC--------CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 345555555555554321111 12369999999999999999999999877754
No 286
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.62 E-value=0.034 Score=65.36 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.-+.|.||+|+|||+|+++|++..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668999999999999999999843
No 287
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.61 E-value=0.065 Score=54.06 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
..+.-+.|.|++|+|||++++.+++.+ +.+++..+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 344568899999999999999999865 6666655443
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.58 E-value=0.017 Score=58.14 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC--CCEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFY 487 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg--~pfi 487 (938)
.+.-+.|.||+|+|||||++.+++..+ +.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 445688999999999999999999877 4444
No 289
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.52 E-value=0.021 Score=62.71 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
.|.-++|.||+|+|||+||..+|...+.+++..+.-.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 3556889999999999999999999998877765433
No 290
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.45 E-value=0.051 Score=55.87 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=42.1
Q ss_pred CceEEEEcCCCchHH-HHHHHHHH--hcCCCEEEEeCc---hh----HHHHhhh-----hhHHHHHHHHHHHhCCCeEEE
Q 002307 458 PHGVLLEGPPGCGKT-LVAKAIAG--EAGVPFYQMAGS---EF----VEVLVGV-----GSARIRDLFKRAKVNKPSVIF 522 (938)
Q Consensus 458 p~GVLL~GPPGTGKT-~LArALA~--elg~pfi~vs~s---el----~~~~vG~-----~~~~vr~lF~~Ar~~~P~ILf 522 (938)
.+-.++|||.|+||| .|.+++.+ ..+..++.+... .+ .+.. |. ......++++..+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhcc-CCcccceecCCHHHHHHhcc--CCCEEE
Confidence 345789999999999 89999866 447777777533 11 1111 10 0111223333322 346999
Q ss_pred EcCcchh
Q 002307 523 IDEIDAL 529 (938)
Q Consensus 523 IDEIDaL 529 (938)
|||+.-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999876
No 291
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.44 E-value=0.036 Score=62.88 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
..+.-|+|+|+||+|||++|+.++..++..++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 345679999999999999999999998866554
No 292
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.42 E-value=0.02 Score=61.02 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=24.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc-CCCEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA-GVPFY 487 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el-g~pfi 487 (938)
.-|+|.|+||+|||++++.++.+. +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999974 54444
No 293
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.35 E-value=0.3 Score=52.82 Aligned_cols=72 Identities=25% Similarity=0.273 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhH-------HHH---hhh---------hh-HHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV-------EVL---VGV---------GS-ARIRDLFKRA 513 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~-------~~~---vG~---------~~-~~vr~lF~~A 513 (938)
.+..+.++|++|+|||+++..+|... +..+..+++.-.. ..+ .+. .. ...+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 55678899999999999999998854 5556555542110 011 110 11 2235566666
Q ss_pred HhCCCeEEEEcCcch
Q 002307 514 KVNKPSVIFIDEIDA 528 (938)
Q Consensus 514 r~~~P~ILfIDEIDa 528 (938)
....+.+|+||+--.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 556788999999744
No 294
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.32 E-value=0.027 Score=55.74 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=24.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
-+.|.||+|+|||++++.+++..+. .+.+++.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 4789999999999999999986543 23444433
No 295
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.31 E-value=0.021 Score=61.31 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=28.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~ 496 (938)
+.-|.|+|++|+|||++++.++ +.|.+++ ++..+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~~~ 110 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHLGH 110 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHHHH
Confidence 4468999999999999999999 6787765 4444433
No 296
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.28 E-value=0.089 Score=61.52 Aligned_cols=42 Identities=29% Similarity=0.441 Sum_probs=32.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 499 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~v 499 (938)
+.-|+|+|.||+|||++|+.+|..+ +.+...++..++.....
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~ 79 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAV 79 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhc
Confidence 4468999999999999999999987 55566667666655543
No 297
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.20 E-value=0.11 Score=56.92 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
..++.-++++||+|+|||+++..+|..+ +..+..+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4566779999999999999999998854 5666666543
No 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.17 E-value=0.094 Score=66.06 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=34.1
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 428 vG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+|.+..+++|.+.+... ...+-|.|+|+.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999888887766421 12356899999999999999999864
No 299
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.16 E-value=0.091 Score=59.84 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=53.1
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhcC---CCEEEEeCc-hhH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGS-EFV 495 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~elg---~pfi~vs~s-el~ 495 (938)
..++++++.-....+..|.+++ . .+..-++|.||+|+|||++++++++... ..++.+.-+ ++.
T Consensus 142 ~~~~l~~Lg~~~~~~~~L~~l~---~----------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 142 TRLDLHSLGMTAHNHDNFRRLI---K----------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp TCCCGGGSCCCHHHHHHHHHHH---T----------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCCCHHHcCCCHHHHHHHHHHH---H----------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 3567777754344444444441 1 1223478999999999999999999763 233333211 110
Q ss_pred -HH----Hhh-hhhHHHHHHHHHHHhCCCeEEEEcCcc
Q 002307 496 -EV----LVG-VGSARIRDLFKRAKVNKPSVIFIDEID 527 (938)
Q Consensus 496 -~~----~vG-~~~~~vr~lF~~Ar~~~P~ILfIDEID 527 (938)
.. .+. ...-.....+..+....|.++++.|+.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 00 000 001123344555566789999999863
No 300
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.15 E-value=0.024 Score=57.37 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+++.+.|.||+|+|||+|++.+++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45578999999999999999999865
No 301
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.13 E-value=0.5 Score=47.53 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=32.5
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhccC---CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG---~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+|+++.=.++..+.|.+. .+..|..++... +...+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4577775445555555431 122232222111 112356999999999999876655543
No 302
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.11 E-value=0.027 Score=57.96 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++.-+.|.||+|+|||+|++.|++..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4455669999999999999999999976
No 303
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.06 E-value=0.019 Score=67.10 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=46.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCch-hHH---HH--------hhhhhHHHHHHHHHHHhCCCeEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSE-FVE---VL--------VGVGSARIRDLFKRAKVNKPSVIF 522 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~se-l~~---~~--------vG~~~~~vr~lF~~Ar~~~P~ILf 522 (938)
.+.+++|.||+|+||||+++++++... ...+.+.... +.- .+ .+.....+.+++..+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345799999999999999999998763 3344443321 110 00 011122355666677778999999
Q ss_pred EcCcc
Q 002307 523 IDEID 527 (938)
Q Consensus 523 IDEID 527 (938)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99984
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.05 E-value=0.028 Score=55.94 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg 483 (938)
+-+.|.||+|+|||++++.+++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998753
No 305
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.98 E-value=0.032 Score=55.07 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=24.8
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||.|+|||+|++++++..
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34555568999999999999999999987
No 306
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.97 E-value=0.13 Score=63.27 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.-++|+||+|+|||++.|.++.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 345899999999999999999873
No 307
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.96 E-value=0.17 Score=55.74 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999999865
No 308
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.95 E-value=0.11 Score=60.98 Aligned_cols=33 Identities=39% Similarity=0.576 Sum_probs=24.8
Q ss_pred hhccCCCCC---ceEEEEcCCCchHHHHHHHHHHhc
Q 002307 450 FDKMGIKPP---HGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 450 ~~~lG~~~p---~GVLL~GPPGTGKT~LArALA~el 482 (938)
|+-++++.| .-+-|.||+|+|||||+++|++..
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 444454444 347899999999999999999843
No 309
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.94 E-value=0.029 Score=62.34 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=28.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 491 (938)
.-|+|.||+|+|||++|+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468999999999999999999999876665543
No 310
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.90 E-value=0.033 Score=56.39 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
+..+.-+.|.||+|+|||+|+++|++...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34555688999999999999999999774
No 311
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.89 E-value=0.25 Score=52.91 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=23.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc-----CCCEEEEeC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 491 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el-----g~pfi~vs~ 491 (938)
+.+++.+|+|+|||+.+-..+-+. +...+.+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 589999999999999876554433 444555443
No 312
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.82 E-value=0.061 Score=64.37 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCch
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~se 493 (938)
.+.-|+|+|.||+|||++|++|+..+ |.+++.+++..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 34569999999999999999999998 99999887543
No 313
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.80 E-value=0.034 Score=61.22 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=28.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s 492 (938)
.-++|.||+|+|||+|+..+|...+..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999998777665543
No 314
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.75 E-value=0.27 Score=49.59 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccC---CCCCceEEEEcCCCchHHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVA 475 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG---~~~p~GVLL~GPPGTGKT~LA 475 (938)
+..+|+++.=.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||..+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 345688876555555555432 123332222211 122357999999999999873
No 315
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.14 Score=61.04 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.++.-+.|.||+|+|||||.+.|++..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345568899999999999999999843
No 316
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.74 E-value=0.027 Score=58.23 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=26.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEe
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs 490 (938)
+++++|.||+|+|||+||..++.+.+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 56799999999999999999998876 655443
No 317
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.73 E-value=0.039 Score=56.28 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=27.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
-|.|.|++|||||++++.||.++|.+|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999883
No 318
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.69 E-value=0.21 Score=61.16 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=19.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e 481 (938)
...+++.||+|+|||+++..+...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999988777654
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.69 E-value=0.032 Score=57.33 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=17.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHH-Hhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIA-GEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA-~el 482 (938)
+.++.-+.|.||+|+|||++++.|+ +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4455668999999999999999999 765
No 320
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.68 E-value=0.05 Score=60.52 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=46.0
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC--CCEEEEeCc-hh--------------HHHHhhh-hhHHHHHHHHHHHhC
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGS-EF--------------VEVLVGV-GSARIRDLFKRAKVN 516 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg--~pfi~vs~s-el--------------~~~~vG~-~~~~vr~lF~~Ar~~ 516 (938)
++++..++|.||+|+|||+|++++++... .-.+.+... ++ .....+. ....+++.+..+...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 34556799999999999999999998653 223333321 11 0000110 122366777788888
Q ss_pred CCeEEEEcCcc
Q 002307 517 KPSVIFIDEID 527 (938)
Q Consensus 517 ~P~ILfIDEID 527 (938)
.|.+++++|+.
T Consensus 252 ~pd~~l~~e~r 262 (361)
T 2gza_A 252 KPTRILLAELR 262 (361)
T ss_dssp CCSEEEESCCC
T ss_pred CCCEEEEcCch
Confidence 89999999975
No 321
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.58 E-value=0.092 Score=62.60 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.-+.|.||+|+|||+|+++|++..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568999999999999999999853
No 322
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.065 Score=63.93 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHHhc
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el 482 (938)
+.|.||+|+|||+|+++|++..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 8899999999999999999854
No 323
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.46 E-value=0.042 Score=60.11 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=26.9
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
+.++++.-+.|+||+|+|||+|++.|++-..
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 4566777899999999999999999999873
No 324
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.45 E-value=0.089 Score=57.23 Aligned_cols=52 Identities=25% Similarity=0.336 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHH-hcCchhhh--ccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 431 DEAVEELQELVRY-LKNPELFD--KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 431 deak~eL~eiV~~-Lk~pe~~~--~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.+++.+.+.+.. +....... .+....+.-+.|.||+|+||||+++.+|+..
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4455555554443 33221001 2234566679999999999999999999865
No 325
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.44 E-value=0.043 Score=57.10 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcCCC
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 485 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg~p 485 (938)
+..+.-+.|.||+|+||||+++.+++.+|..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3444458899999999999999999987644
No 326
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.37 E-value=0.35 Score=54.89 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.-++|.||+|+|||+|++.|++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 445569999999999999999998853
No 327
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.34 E-value=0.38 Score=48.80 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=31.9
Q ss_pred CCCCcccCcccCcH-HHHHHHHHHHHHhcCchhhhccC---CCCCceEEEEcCCCchHHHHHH
Q 002307 418 GSTGVKFSDVAGID-EAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 418 ~~~~v~F~dVvG~d-eak~eL~eiV~~Lk~pe~~~~lG---~~~p~GVLL~GPPGTGKT~LAr 476 (938)
..+..+|++..+.. +..+.|.+. .+..|..++... +...+.+++.+|+|+|||..+-
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 34566788865553 333333321 133333332221 1234679999999999998644
No 328
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.20 E-value=0.11 Score=65.17 Aligned_cols=26 Identities=38% Similarity=0.689 Sum_probs=22.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
+..+.-+.|.||+|+|||||+++|++
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44555689999999999999999995
No 329
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.17 E-value=0.1 Score=61.25 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.-+.|.||+|+|||+|+++|++..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668999999999999999999854
No 330
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.08 E-value=0.4 Score=54.75 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH-------HH---hhh---------h-hHHHHHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-------VL---VGV---------G-SARIRDLFKRA 513 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~-------~~---vG~---------~-~~~vr~lF~~A 513 (938)
++..+++.|++|+|||+++..+|..+ +..+..+++.-... .+ .+. . ....+..++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999865 55666555432111 11 110 0 12225566666
Q ss_pred HhCCCeEEEEcCcc
Q 002307 514 KVNKPSVIFIDEID 527 (938)
Q Consensus 514 r~~~P~ILfIDEID 527 (938)
+.....+++||=..
T Consensus 177 ~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 177 RLEARDLILVDTAG 190 (425)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HHCCCCEEEEcCCC
Confidence 55566789988543
No 331
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.06 E-value=0.048 Score=61.98 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=28.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 491 (938)
+.-|+|.||+|+|||+|+..||...+..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3458899999999999999999999877665543
No 332
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.01 E-value=0.24 Score=57.77 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
..+..|+|+|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346679999999999999999999755 666666665
No 333
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.00 E-value=0.27 Score=50.53 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccC---CCCCceEEEEcCCCchHHHHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAKA 477 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG---~~~p~GVLL~GPPGTGKT~LArA 477 (938)
+..+|+++.=.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||..+-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 456788885445554444331 133333332211 12235799999999999976443
No 334
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.97 E-value=0.064 Score=55.05 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
.++-+.|.||+|+|||+|+++|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455689999999999999999998764
No 335
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.93 E-value=0.22 Score=62.85 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.7
Q ss_pred CceEEEEcCCCchHHHHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIA 479 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA 479 (938)
+..++|+||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4668999999999999999993
No 336
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.91 E-value=0.058 Score=55.93 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
...+.-+.|.||+|+|||+|++++++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34556689999999999999999999764
No 337
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.84 E-value=0.047 Score=59.12 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
..+.-|.|.||+|+|||+|++.|++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456688999999999999999998764
No 338
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.83 E-value=0.48 Score=48.28 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=15.8
Q ss_pred CceEEEEcCCCchHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LAr 476 (938)
.+.+++.+|+|+|||+.+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 3579999999999998543
No 339
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.81 E-value=0.31 Score=55.75 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCchhH----HH---H---hhh----------hhHHHHHHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFV----EV---L---VGV----------GSARIRDLFK 511 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~sel~----~~---~---vG~----------~~~~vr~lF~ 511 (938)
.+|+.|+++|++|+|||+++-.+|..+ |..+..+++.-+. .. + .+. ....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 456789999999999999999998644 6777777765321 10 0 110 1222355666
Q ss_pred HHHhCCCeEEEEcCcc
Q 002307 512 RAKVNKPSVIFIDEID 527 (938)
Q Consensus 512 ~Ar~~~P~ILfIDEID 527 (938)
.++.....+++||=..
T Consensus 178 ~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 6665566799998743
No 340
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.80 E-value=0.18 Score=57.56 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
.|..|+++|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45679999999999999999999865 4566666654
No 341
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.73 E-value=0.13 Score=57.59 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHH-hcCch--hhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 431 DEAVEELQELVRY-LKNPE--LFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 431 deak~eL~eiV~~-Lk~pe--~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.+++.+.+.+.. +.... .--.+...++.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4555556554443 33221 0012334566779999999999999999999865
No 342
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.73 E-value=0.19 Score=51.14 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=40.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHHHH--------hhhh-----hHHHHHHHHHHHhCCCeEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL--------VGVG-----SARIRDLFKRAKVNKPSVI 521 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~~~--------vG~~-----~~~vr~lF~~Ar~~~P~IL 521 (938)
.+-.+++||+|+|||+.+-.++.++ +..++.+...- -..+ .|.. .....++++.+.. ...+|
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~-d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvV 85 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI-DNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVI 85 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc-CccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEE
Confidence 3457899999999999888887765 66665553111 0110 1110 0111244544332 35699
Q ss_pred EEcCcchh
Q 002307 522 FIDEIDAL 529 (938)
Q Consensus 522 fIDEIDaL 529 (938)
+|||+.-+
T Consensus 86 iIDEaqfl 93 (191)
T 1xx6_A 86 AIDEVQFF 93 (191)
T ss_dssp EECSGGGS
T ss_pred EEECCCCC
Confidence 99998875
No 343
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.57 E-value=0.16 Score=55.03 Aligned_cols=71 Identities=24% Similarity=0.291 Sum_probs=45.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchh----HH---HH---hhh----------hhHHHHHHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF----VE---VL---VGV----------GSARIRDLFKRAK 514 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel----~~---~~---vG~----------~~~~vr~lF~~Ar 514 (938)
+.-+++.|++|+|||+++..+|..+ +..+..+++.-. .. .+ .+. ....++..+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6678899999999999999998765 666666665421 10 01 010 1122345666666
Q ss_pred hCCCeEEEEcCcch
Q 002307 515 VNKPSVIFIDEIDA 528 (938)
Q Consensus 515 ~~~P~ILfIDEIDa 528 (938)
.....+|+||=...
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 56677999997544
No 344
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.57 E-value=0.17 Score=60.43 Aligned_cols=33 Identities=36% Similarity=0.501 Sum_probs=23.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~s 492 (938)
-.||+||||||||+++-.+...+ +.+++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 36999999999998655554433 6677766654
No 345
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.37 E-value=0.037 Score=55.56 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg 483 (938)
-|.|.|++|+|||++++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 346
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.34 E-value=0.073 Score=53.98 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=28.4
Q ss_pred EEEEcCCCchHHHHHHHHHHhcCCCEEEEeCch
Q 002307 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (938)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~vs~se 493 (938)
+|++|++|+|||++|..++.. +.|.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 699999999999999999988 88888887644
No 347
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.30 E-value=0.2 Score=61.25 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.-++|+||+|+|||++.|.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 345889999999999999999873
No 348
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.24 E-value=0.44 Score=50.45 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=25.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEEEeC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~vs~ 491 (938)
+.+++.+|+|+|||..+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 479999999999999877776666666665544
No 349
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.13 E-value=0.62 Score=51.38 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=25.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEe
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 490 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs 490 (938)
..-|.|+|+||+|||+++.+++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3468999999999999999998764 54444443
No 350
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.10 E-value=0.15 Score=58.88 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+..++|+||+|+|||+|++.++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3458999999999999999987653
No 351
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.04 E-value=0.99 Score=44.65 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.5
Q ss_pred ceEEEEcCCCchHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LAr 476 (938)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 352
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.04 E-value=0.31 Score=55.91 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=30.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcC---CCEEEEeCchhHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEV 497 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sel~~~ 497 (938)
+.-|+|+|.||+|||++++.++..++ .+...++..++...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence 45699999999999999999999864 45555554444433
No 353
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.14 Score=50.00 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=30.0
Q ss_pred CcHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 429 GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 429 G~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+...+.+.+++..+.... ......|++.|++|+|||+|+.++.+..
T Consensus 25 ~~~~l~~~l~~~~~~~~~~~------~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 25 KISQWREWIDEKLGGGSGGG------GSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp BCHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhcCCC------CCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34555556655554333221 1334579999999999999999998754
No 354
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.97 E-value=0.089 Score=55.34 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=26.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEE
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~v 489 (938)
-+-|.||||+|||++|+.|+..++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 367899999999999999999999887743
No 355
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.97 E-value=1 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=18.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.+.+++.+|+|+|||..+-..+-
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999987654443
No 356
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.89 E-value=0.068 Score=57.73 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=25.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcC---CCEEEEeCchhH
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFV 495 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg---~pfi~vs~sel~ 495 (938)
.-|.|.||+|+|||++++.++..++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999998765 445556655543
No 357
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.83 E-value=0.1 Score=54.25 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC--CCEEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg--~pfi~v 489 (938)
.+.-|.|.||||+|||++++.+++.++ .+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 445688999999999999999999885 466544
No 358
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.82 E-value=0.4 Score=52.48 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=31.3
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccCC---CCCceEEEEcCCCchHHHHHHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGI---KPPHGVLLEGPPGCGKTLVAKAIA 479 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG~---~~p~GVLL~GPPGTGKT~LArALA 479 (938)
...+|+++.=.+...+.|.+. .+..+..++...+ ...+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 345788876555555555431 1222222221111 123569999999999998655443
No 359
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.81 E-value=0.091 Score=54.78 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=27.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
.-|.|.|++|||||++++.||..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358899999999999999999999999864
No 360
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.73 E-value=0.059 Score=57.37 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
+..+.-+.|.||+|+|||||++++++-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45556688999999999999999998653
No 361
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.69 E-value=0.091 Score=56.95 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
.+.-+.|.||+|+|||||++.|++..+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 362
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.66 E-value=0.26 Score=58.27 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=32.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcC----CCEEEEeCchhHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAGSEFVE 496 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg----~pfi~vs~sel~~ 496 (938)
+..|+|.|+||+|||++|++|+..++ .+++.++...+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 45689999999999999999999875 7888887665443
No 363
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.62 E-value=0.11 Score=52.58 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=23.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPF 486 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pf 486 (938)
.+|+||.|+||+|||++|.++..+ |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 568999999999999999999874 4433
No 364
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.60 E-value=0.099 Score=57.15 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.-+.|.||+|+|||||++.|++..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445568899999999999999999866
No 365
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.57 E-value=0.059 Score=56.57 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++.-+.|.||+|+|||+|++++++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555668999999999999999999854
No 366
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.49 E-value=0.28 Score=57.79 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC----CCEEEEeCchhHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAGSEFVE 496 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg----~pfi~vs~sel~~ 496 (938)
..+..+.|.|++|+||||++++||+.++ ..+..+++..+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 3455689999999999999999999874 3555577766543
No 367
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.48 E-value=0.073 Score=56.00 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=24.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.. .-+.|.||+|+|||||.+++++-.
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456 678899999999999999999865
No 368
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.43 E-value=0.076 Score=56.62 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=24.1
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.+.++.-+.|.||+|+|||||++.+++-
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455667899999999999999999986
No 369
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.37 E-value=0.071 Score=56.22 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+.++.-+.|.||+|+|||||++++++-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445566899999999999999999985
No 370
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.34 E-value=0.069 Score=56.77 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|++++++-.
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35566679999999999999999999854
No 371
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.31 E-value=0.1 Score=52.90 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
-+.|.||+|+|||+|++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 372
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.28 E-value=0.5 Score=49.54 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.8
Q ss_pred ceEEEEcCCCchHHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAKA 477 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArA 477 (938)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5689999999999986543
No 373
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.25 E-value=1.2 Score=48.98 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccC---CCCCceEEEEcCCCchHHHHHHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAKAIA 479 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG---~~~p~GVLL~GPPGTGKT~LArALA 479 (938)
+..+|+++.=.+...+.|.+. .+..|..++... +...+.+++.+|+|+|||..+-..+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 345788875455555555431 133332222211 1124579999999999997665443
No 374
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.24 E-value=0.064 Score=55.84 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||+|.+++++..
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556678999999999999999999854
No 375
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.24 E-value=0.67 Score=47.62 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=16.0
Q ss_pred CceEEEEcCCCchHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LAr 476 (938)
.+.+++.+|+|+|||..+-
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 3579999999999998744
No 376
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.20 E-value=0.065 Score=56.17 Aligned_cols=29 Identities=38% Similarity=0.401 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
+..+.-+.|.||+|+|||||.+++++-..
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44555688999999999999999998653
No 377
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=91.19 E-value=1 Score=46.13 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=15.5
Q ss_pred CceEEEEcCCCchHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVA 475 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LA 475 (938)
.+.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 357999999999999864
No 378
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.10 E-value=0.064 Score=55.54 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++.-+.|.||+|+|||+|++++++-.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455668999999999999999999854
No 379
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.04 E-value=0.44 Score=57.22 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=23.2
Q ss_pred CceEEEEcCCCchHHHHHHHHH-Hhc--CCCEEEEeC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIA-GEA--GVPFYQMAG 491 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA-~el--g~pfi~vs~ 491 (938)
.+.+++.||+|+|||+.+-..+ ... +...+.+..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 4579999999999999884333 222 445555543
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.02 E-value=0.21 Score=55.01 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
..|.-+.|.||+|+||||+++.+++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455688999999999999999998764
No 381
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.01 E-value=0.077 Score=56.51 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=24.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.++.-+.|.||+|+|||||++++++-.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34555668899999999999999999854
No 382
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=90.94 E-value=0.54 Score=56.60 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=17.4
Q ss_pred CCceEEEEcCCCchHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LAr 476 (938)
..+.+++.||+|+|||+.+.
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35789999999999998873
No 383
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.94 E-value=0.13 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999865
No 384
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.81 E-value=0.79 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=17.7
Q ss_pred CceEEEEcCCCchHHHHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIA 479 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA 479 (938)
++.+++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4689999999999998665443
No 385
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.81 E-value=0.074 Score=56.30 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
+.++.-+.|.||+|+|||+|.+++++-..
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45556689999999999999999998653
No 386
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.76 E-value=0.22 Score=51.56 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=34.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHH
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFK 511 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~sel~~~~vG~~~~~vr~lF~ 511 (938)
.|-|+|..|||||++++.++. .|.|++. +..+.......+...+..+++
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vid--aD~ia~~l~~~~~~~~~~i~~ 59 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVD--TDLIAHRITAPAGLAMPAIEQ 59 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE--HHHHHHHHTSTTCTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEE--CcHHHHHHhcCCcHHHHHHHH
Confidence 588999999999999999998 8988764 455444444333333344443
No 387
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.73 E-value=0.62 Score=50.51 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=31.4
Q ss_pred CCCcccCcccCcHHHHHHHHHHHHHhcCchhhhccC---CCCCceEEEEcCCCchHHHHHH
Q 002307 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 419 ~~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG---~~~p~GVLL~GPPGTGKT~LAr 476 (938)
....+|+++.=.+...+.|... .+..+..++... +...+.+++.+|+|+|||..+-
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 3456788875445555555432 122332222211 1113569999999999998743
No 388
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.63 E-value=0.078 Score=57.06 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=24.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 454 G~~~p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
.+.++.-+.|.||+|+|||||++++++-..
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345556689999999999999999998653
No 389
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.58 E-value=1 Score=46.81 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=16.1
Q ss_pred CceEEEEcCCCchHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LAr 476 (938)
.+.+++.+|+|+|||..+-
T Consensus 80 ~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhH
Confidence 4679999999999998644
No 390
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=90.58 E-value=0.58 Score=51.50 Aligned_cols=37 Identities=35% Similarity=0.404 Sum_probs=27.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCc-hhHH
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS-EFVE 496 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s-el~~ 496 (938)
++++.+|+|+|||..+-+++... +.+++.+... .+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~ 66 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL 66 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 78999999999999988886654 5666666543 4443
No 391
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.57 E-value=0.76 Score=46.83 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=29.9
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccC---CCCCceEEEEcCCCchHHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVA 475 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG---~~~p~GVLL~GPPGTGKT~LA 475 (938)
+..+|+++.-.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||..+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 345688875445555555331 123233222111 122467999999999999864
No 392
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.44 E-value=0.16 Score=49.74 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcC
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg 483 (938)
-.+|+||+|+|||++++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999988765
No 393
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.42 E-value=0.11 Score=53.37 Aligned_cols=23 Identities=43% Similarity=0.447 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
.-+.|.||+|+|||+|++++++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999974
No 394
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.38 E-value=0.76 Score=53.17 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.0
Q ss_pred CCceEEEEcCCCchHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVA 475 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LA 475 (938)
..+.+++.+|+|+|||+.+
T Consensus 110 ~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 3568999999999999853
No 395
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=90.32 E-value=1.1 Score=50.79 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=24.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc--------CCCEEEEeCc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA--------GVPFYQMAGS 492 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el--------g~pfi~vs~s 492 (938)
+.+++.+|+|+|||..+-..+.+. +...+.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 469999999999998876665443 5556655543
No 396
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.26 E-value=0.18 Score=52.14 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAG 483 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg 483 (938)
|.-|.|.|++|+|||++++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34689999999999999999999983
No 397
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.20 E-value=0.18 Score=50.54 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..-+.|.|++|+|||+|++.+++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999998764
No 398
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.13 E-value=0.083 Score=55.47 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=25.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc-CCCEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFY 487 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el-g~pfi 487 (938)
.+.-|.|.|++|+|||++++.|+..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34568999999999999999999998 44443
No 399
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.77 E-value=0.17 Score=55.92 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVP 485 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~p 485 (938)
..-+.|.||+|+|||||++.|++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987654
No 400
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.72 E-value=0.24 Score=59.42 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=21.0
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHH
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAI 478 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArAL 478 (938)
+.+.++.-+.|.||+|+|||||++++
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 34556667999999999999999764
No 401
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=89.68 E-value=0.87 Score=53.24 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.3
Q ss_pred CCceEEEEcCCCchHHHHHH
Q 002307 457 PPHGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LAr 476 (938)
..+.+++.+|+|+|||..+-
T Consensus 59 ~~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHH
Confidence 35689999999999998533
No 402
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.58 E-value=0.18 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
-+.|.|++|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 403
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=89.55 E-value=0.48 Score=53.58 Aligned_cols=37 Identities=30% Similarity=0.314 Sum_probs=30.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHhcCCCEEEEeCc-hhHH
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-EFVE 496 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~elg~pfi~vs~s-el~~ 496 (938)
.++|++|+|+|||..+-+++...+.+.+.+... .+..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 589999999999999998888888887777655 4444
No 404
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=89.54 E-value=0.87 Score=45.85 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=15.8
Q ss_pred ceEEEEcCCCchHHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAKA 477 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArA 477 (938)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999986443
No 405
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.49 E-value=0.17 Score=54.11 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=21.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.|.||+|+|||+|.++|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 406
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.43 E-value=0.12 Score=56.06 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++.-+.|.||+|+|||+|++++++-.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4555668999999999999999999854
No 407
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.37 E-value=0.18 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
-+.|.|++|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 408
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.32 E-value=0.45 Score=49.66 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=20.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+..|+|.|.||+|||+|..++.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346999999999999999999763
No 409
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.24 E-value=0.13 Score=54.99 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+. +.-+.|.||+|+|||||.+++++..
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 5568899999999999999999876
No 410
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.23 E-value=1.1 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=16.7
Q ss_pred CceEEEEcCCCchHHHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAI 478 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArAL 478 (938)
.+.+++.+|+|+|||+.+-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 456999999999999875433
No 411
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.19 E-value=0.98 Score=51.88 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
..+-.++.|+||||||++.+.++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3445789999999999999888753
No 412
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.04 E-value=1.8 Score=49.35 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=23.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc--------CCCEEEEeC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA--------GVPFYQMAG 491 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el--------g~pfi~vs~ 491 (938)
+.+++.+|+|+|||..+-..+.+. +...+.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 469999999999998876665443 455555544
No 413
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.02 E-value=0.67 Score=48.19 Aligned_cols=31 Identities=10% Similarity=-0.125 Sum_probs=24.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc---CCCEEEEe
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 490 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el---g~pfi~vs 490 (938)
-.+++||.|+|||+.+-.++.++ +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999888887654 66666654
No 414
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.99 E-value=0.72 Score=50.64 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.-+.|.|+||+|||+++++++...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999998754
No 415
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.93 E-value=0.37 Score=49.69 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=26.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEe
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 490 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs 490 (938)
+.-|.|.|++|+|||++++.++..+ +.+++...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 3457889999999999999999876 46665543
No 416
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.88 E-value=0.83 Score=49.10 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=31.2
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhc-----cCCCCCceEEEEcCCCchHHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDK-----MGIKPPHGVLLEGPPGCGKTLVA 475 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~-----lG~~~p~GVLL~GPPGTGKT~LA 475 (938)
+..+|+++.=.+...+.|... .+..|..++. +-..+++.+++++|+|+|||...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 345788875555555555431 1333322221 11123578999999999999764
No 417
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.66 E-value=0.75 Score=54.07 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=31.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~sel~~ 496 (938)
+.-|+|+|++|+|||++++.++..+ |.++..+++..+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568999999999999999999876 46777777655443
No 418
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.63 E-value=0.17 Score=50.43 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=21.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.+.|.|++|+|||+|++.|++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 419
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.59 E-value=0.24 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|++.|++|+|||+|++++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 420
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.56 E-value=1.2 Score=43.60 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|+|.|++|+|||+|++++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 421
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=88.56 E-value=1.4 Score=52.81 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHH-h---cCCCEEEEeC
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAG-E---AGVPFYQMAG 491 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~-e---lg~pfi~vs~ 491 (938)
...+.+++.||+|+|||+.+-..+- . .+...+.+..
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3467899999999999999844332 1 2445555543
No 422
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.49 E-value=0.28 Score=57.34 Aligned_cols=27 Identities=7% Similarity=0.033 Sum_probs=24.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCC
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGV 484 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~ 484 (938)
+..|.|.|.+|||||+++++||.+++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999874
No 423
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.40 E-value=0.28 Score=49.09 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=25.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEe
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMA 490 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs 490 (938)
.-+.|.|++|+|||+++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 368899999999999999998865 45554444
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.30 E-value=0.31 Score=48.79 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=22.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el 482 (938)
...|+|.|++|+|||+|+.++.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999999854
No 425
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.03 E-value=0.21 Score=57.60 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+..+.-+.|.||+|+|||+|+|.|++-.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4455569999999999999999999854
No 426
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.95 E-value=0.28 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 427
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.90 E-value=0.27 Score=46.35 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=20.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|++++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 428
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.87 E-value=0.27 Score=45.93 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|++.|++|+|||+|++++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 429
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.83 E-value=0.49 Score=47.45 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el 482 (938)
..++|.|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 430
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=87.78 E-value=0.97 Score=54.16 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=17.8
Q ss_pred CCCCceEEEEcCCCchHHHHH
Q 002307 455 IKPPHGVLLEGPPGCGKTLVA 475 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LA 475 (938)
+..+.-+.|.||+|+|||||+
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 455566899999999999996
No 431
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=87.76 E-value=1.5 Score=45.09 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.2
Q ss_pred ceEEEEcCCCchHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LAr 476 (938)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998543
No 432
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.64 E-value=0.3 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
..|++.|++|+|||+|++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 433
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.63 E-value=0.23 Score=47.67 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 434
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.56 E-value=0.31 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|++.|++|+|||+|.+++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 435
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=87.52 E-value=1.6 Score=49.37 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=21.8
Q ss_pred ceEEEEcCCCchHHHHH-HHHHH---hcCCCEEEEeC
Q 002307 459 HGVLLEGPPGCGKTLVA-KAIAG---EAGVPFYQMAG 491 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LA-rALA~---elg~pfi~vs~ 491 (938)
+.+|+.||+|+|||..+ -++.. ..+...+.+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 57999999999999975 43432 23444444443
No 436
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=87.49 E-value=1.6 Score=55.46 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=23.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc---CCCEEEEeC
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG 491 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el---g~pfi~vs~ 491 (938)
+.+|++||+|+|||+.+-..+... +...+.+..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 579999999999999876554433 555555544
No 437
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.36 E-value=0.32 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|++.|++|+|||+|++++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 438
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.32 E-value=0.25 Score=48.34 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.5
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 002307 460 GVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~ 480 (938)
-|+|.|++|+|||+|++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 439
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=87.25 E-value=2.2 Score=46.78 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccC---CCCCceEEEEcCCCchHHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLVA 475 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG---~~~p~GVLL~GPPGTGKT~LA 475 (938)
+..+|+++.=.+...+.|... .+..|..++... +...+.+++.+|+|+|||+.+
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 345688874444444444321 123332222211 123467999999999999743
No 440
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.22 E-value=0.14 Score=50.89 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=23.2
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 453 lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+....+.-+.|.|++|+|||+|.+++++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33445556999999999999999998753
No 441
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.16 E-value=0.33 Score=49.95 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ 488 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi~ 488 (938)
.+.-+.|.|+.|+|||++++.|++. +..+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 3445889999999999999999987 444443
No 442
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.13 E-value=0.45 Score=49.66 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=23.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhc-------CCCEEEEe
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMA 490 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~el-------g~pfi~vs 490 (938)
+.-|.|.|++|+|||++++.++..+ +.+++...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 4458899999999999999999876 66665443
No 443
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.08 E-value=0.33 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|.+++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 444
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.07 E-value=0.59 Score=48.42 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=25.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 487 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi 487 (938)
+.-|.|.|++|+|||++++.++..++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 456889999999999999999999986543
No 445
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.04 E-value=0.33 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|.+++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 446
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.03 E-value=0.32 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 447
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=86.98 E-value=0.42 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e 481 (938)
...|++.|++|+|||+|..++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999763
No 448
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.94 E-value=0.55 Score=53.73 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=25.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhcCCCE
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF 486 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~elg~pf 486 (938)
..+.-+.|.||+|||||+|++.|++......
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 3445689999999999999999999875443
No 449
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.93 E-value=0.32 Score=46.21 Aligned_cols=22 Identities=50% Similarity=0.758 Sum_probs=20.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|++++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999763
No 450
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.92 E-value=0.34 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
..|++.|++|+|||+|++++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 451
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.88 E-value=0.29 Score=47.44 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
.-|+|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 452
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.85 E-value=0.35 Score=45.49 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|++++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 453
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.79 E-value=0.36 Score=45.42 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 454
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=86.78 E-value=2.1 Score=42.57 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|+|.|++|+|||+|++++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 455
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.72 E-value=0.39 Score=45.90 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~ 480 (938)
+..|++.|++|+|||+|++++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45699999999999999999976
No 456
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=86.72 E-value=0.34 Score=57.70 Aligned_cols=33 Identities=36% Similarity=0.517 Sum_probs=24.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc----CCCEEEEeCc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGS 492 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el----g~pfi~vs~s 492 (938)
.++|.||||||||+++..++..+ +.+++.+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 57999999999999888776643 4566665544
No 457
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.67 E-value=0.31 Score=46.02 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 458
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.64 E-value=0.36 Score=46.53 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
..|+|.|++|+|||+|++++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999873
No 459
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.49 E-value=0.38 Score=45.30 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|++++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999764
No 460
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.42 E-value=3.1 Score=45.20 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.4
Q ss_pred CceEEEEcCCCchHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LAr 476 (938)
++.+++.+|+|+|||..+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 4689999999999998753
No 461
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.20 E-value=0.38 Score=45.56 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.0
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 002307 460 GVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~ 480 (938)
-|++.|++|+|||+|++++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 462
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=86.18 E-value=2.5 Score=47.80 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=29.8
Q ss_pred cccCcccCcHHHHHHHHHHHHHhcCchhhhc-----cCCCCCceEEEEcCCCchHHHHHH
Q 002307 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDK-----MGIKPPHGVLLEGPPGCGKTLVAK 476 (938)
Q Consensus 422 v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~-----lG~~~p~GVLL~GPPGTGKT~LAr 476 (938)
.+|+++.=.+...+.|.+. .+..|..++. +-...++.+++.||+|+|||..+-
T Consensus 92 ~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHH
Confidence 4677765555555555331 1222221111 111235789999999999998743
No 463
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=86.14 E-value=2.1 Score=48.06 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=30.4
Q ss_pred CCcccCcccCcHHHHHHHHHHHHHhcCchhhhccC---CCCCceEEEEcCCCchHHHH
Q 002307 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMG---IKPPHGVLLEGPPGCGKTLV 474 (938)
Q Consensus 420 ~~v~F~dVvG~deak~eL~eiV~~Lk~pe~~~~lG---~~~p~GVLL~GPPGTGKT~L 474 (938)
+-.+|+++.=.+...+.|... .+..|..++... +...+.+++.+|+|+|||+.
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 455788875445544444321 133333332221 12346799999999999984
No 464
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.08 E-value=0.36 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
-.|++.|++|+|||+|++++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999999753
No 465
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.08 E-value=0.42 Score=50.18 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhc---CCC-EEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVP-FYQM 489 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~el---g~p-fi~v 489 (938)
.+.-|.|.|++|+|||++++.++..+ +.+ .+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 34568899999999999999999866 555 4433
No 466
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.07 E-value=0.41 Score=45.58 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el 482 (938)
..|++.|++|+|||+|++++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998743
No 467
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.06 E-value=0.38 Score=45.80 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|++++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 468
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.01 E-value=0.43 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
..+.-+.|.||||+|||+|.+++++..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344568899999999999999999754
No 469
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.00 E-value=0.46 Score=52.18 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=24.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHhcCCCEE
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 487 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~elg~pfi 487 (938)
+.|++|.|++|+|||++|.++..+ |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 568999999999999999999875 44443
No 470
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.92 E-value=0.55 Score=52.04 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCC
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVP 485 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~p 485 (938)
.+.-+.|.||+|+|||+|.+.|++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34468999999999999999999987543
No 471
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.90 E-value=0.3 Score=55.77 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=22.4
Q ss_pred CCCCce--EEEEcCCCchHHHHHHHHHHh
Q 002307 455 IKPPHG--VLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 455 ~~~p~G--VLL~GPPGTGKT~LArALA~e 481 (938)
++.+.- +.|.||+|+|||+|+++|++.
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 444555 889999999999999999986
No 472
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.90 E-value=0.35 Score=45.63 Aligned_cols=21 Identities=48% Similarity=0.839 Sum_probs=19.1
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 002307 460 GVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~ 480 (938)
-|++.|++|+|||+|.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 473
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.89 E-value=0.45 Score=46.76 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e 481 (938)
...|++.|++|+|||+|++++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 474
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.87 E-value=0.42 Score=46.06 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|++.|++|+|||+|++++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 475
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.85 E-value=0.39 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
..|++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 476
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.84 E-value=0.51 Score=45.98 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e 481 (938)
...|++.|++|+|||+|..++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999764
No 477
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.79 E-value=0.36 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
.-|.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 478
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.74 E-value=0.43 Score=46.43 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|++.|++|+|||+|+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 479
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.73 E-value=0.43 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
..|++.|++|+|||+|++++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36999999999999999999874
No 480
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.73 E-value=0.71 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHh
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
...++++.||+|+|||++++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
No 481
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=85.58 E-value=0.39 Score=57.09 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHhcCchhhhccCCCCCceEEEEcCCCchHHHHHHHHHHh
Q 002307 430 IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 430 ~deak~eL~eiV~~Lk~pe~~~~lG~~~p~GVLL~GPPGTGKT~LArALA~e 481 (938)
+++....+.+.++.+..-.. ...+..|. +.|.||+|+|||+|.++|++.
T Consensus 20 ~~~~~r~ll~~id~l~~~gv--~~~l~lp~-iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 20 YEEKVRPCIDLIDSLRALGV--EQDLALPA-IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CHHHHHHHHHHHHHHHHHSC--CSSCCCCC-EECCCCTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCCC--CCcccCCe-EEEECCCCChHHHHHHHHhCC
Confidence 34434445555554432221 11234454 899999999999999999985
No 482
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.58 E-value=0.43 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999988754
No 483
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.54 E-value=0.44 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
..|+|.|++|+|||+|++++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999874
No 484
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=85.41 E-value=0.57 Score=45.31 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e 481 (938)
.-.|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999885
No 485
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.40 E-value=0.45 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|++++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.37 E-value=0.42 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
..|++.|++|+|||+|++++.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 487
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.25 E-value=0.44 Score=46.00 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
..|++.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999874
No 488
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.21 E-value=0.52 Score=49.13 Aligned_cols=32 Identities=25% Similarity=0.183 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcC----CCEEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQ 488 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg----~pfi~ 488 (938)
.+.-|.|.|++|+|||++++.++..++ .+++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 345588889999999999999998654 35554
No 489
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.19 E-value=0.49 Score=46.70 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHh
Q 002307 458 PHGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArALA~e 481 (938)
...|+|.|++|+|||+|++++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 446999999999999999999864
No 490
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=85.11 E-value=2.3 Score=49.00 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.6
Q ss_pred CceEEEEcCCCchHHHHHHH
Q 002307 458 PHGVLLEGPPGCGKTLVAKA 477 (938)
Q Consensus 458 p~GVLL~GPPGTGKT~LArA 477 (938)
++.+++.+|+|+|||..+-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 46899999999999987443
No 491
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.08 E-value=0.44 Score=55.85 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHhc
Q 002307 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 455 ~~~p~GVLL~GPPGTGKT~LArALA~el 482 (938)
+.++.-+.|.||+|+|||||+++|++..
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678999999999999999999843
No 492
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.01 E-value=0.43 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~ 480 (938)
-.|++.|++|+|||+|++++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999965
No 493
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.96 E-value=0.49 Score=45.24 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHhc
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~el 482 (938)
..|++.|++|+|||+|++++.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 469999999999999999998743
No 494
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=84.90 E-value=2.9 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|.|.|+||+|||+|.+++++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4889999999999999999864
No 495
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.81 E-value=0.51 Score=45.33 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHh
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~e 481 (938)
.|++.|++|+|||+|++++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 496
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.79 E-value=0.5 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=19.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
-.+|+||.|+|||++..||.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997543
No 497
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=84.76 E-value=0.51 Score=45.49 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHh
Q 002307 459 HGVLLEGPPGCGKTLVAKAIAGE 481 (938)
Q Consensus 459 ~GVLL~GPPGTGKT~LArALA~e 481 (938)
..|+|.|++|+|||+|++++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 498
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=84.55 E-value=0.64 Score=45.85 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHH
Q 002307 456 KPPHGVLLEGPPGCGKTLVAKAIAG 480 (938)
Q Consensus 456 ~~p~GVLL~GPPGTGKT~LArALA~ 480 (938)
.....|++.|++|+|||+|++++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445699999999999999999964
No 499
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=84.54 E-value=0.52 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHhc
Q 002307 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (938)
Q Consensus 460 GVLL~GPPGTGKT~LArALA~el 482 (938)
.|+|.|++|+|||+|++++.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998743
No 500
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=84.49 E-value=0.52 Score=51.74 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHhcCCCEE
Q 002307 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY 487 (938)
Q Consensus 457 ~p~GVLL~GPPGTGKT~LArALA~elg~pfi 487 (938)
.+.|+||.|+||+|||++|-++.. .|..++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 357899999999999999998865 444444
Done!